BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005305
         (703 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score = 1114 bits (2881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/706 (75%), Positives = 615/706 (87%), Gaps = 5/706 (0%)

Query: 1   MEIPLLRYQSVALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECC 60
           M+IPL R Q++++DQIQ++C     F+ +++L+ KS  S      ++RK +  F ++ C 
Sbjct: 1   MDIPLSRNQNMSMDQIQSNCGLPHLFSVDEILREKSF-SQRLLPFNRRKRRTPFSQIRCS 59

Query: 61  LMEQGLKPRPKPNKIYTEEL---KESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELF 117
            +EQGL+PRPKP K  T EL   KE+ + +TQ++KPS+ +C QIEKLV  KRY EALELF
Sbjct: 60  SLEQGLQPRPKP-KPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELF 118

Query: 118 EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR 177
           EILE  G +D+ S TYDAL+SACIGL+SIR VK+VF+YM+++G +PD Y+RNRVLLMHV+
Sbjct: 119 EILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVK 178

Query: 178 CGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATM 237
           CGMMIDARRLFDEMPE+N++S N II G++D+GDY EAF LFL +W++FSD GSR F TM
Sbjct: 179 CGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTM 238

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           IRASAGL LI  G+QLHSC+LK G G +VFV+CALIDMYSKCGSIEDAQ VFD+M EKTT
Sbjct: 239 IRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTT 298

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           VGWN+IIAGYALHGYSEEAL +YYEMRDSGVK+D+FTFS+IIRIC RLASLEHAKQAHAG
Sbjct: 299 VGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAG 358

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           LVRHGFGLDIVAN+ALVD YSKWGRIEDA+HVFD M  KNVISWNALIAGYGNHGRG EA
Sbjct: 359 LVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEA 418

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           VE+FE+ML  GM PNHVTFLAVLSACS SGLS+RGWEIF+SMSRDHKIKPRAMHYACMIE
Sbjct: 419 VEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIE 478

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
           LLGREGLLDEAFALI+ APFK T NMWAALLTACRV+ N ELGKFAAEKLYGM PEKLSN
Sbjct: 479 LLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSN 538

Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI 597
           YVVLLNIYN SG+L+EAA VI+TL+R+GLRMLPACSWIE+KKQP+ F+SGD+ H Q+KEI
Sbjct: 539 YVVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEI 598

Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIV 657
           Y+K+D +MLEISKHGYVP++K LLPDVDEQE+RVL YHSEKLA+AFGLINTSDWTPLQIV
Sbjct: 599 YQKLDELMLEISKHGYVPQDKFLLPDVDEQEERVLLYHSEKLAIAFGLINTSDWTPLQIV 658

Query: 658 QSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           QSHRIC DCH+AIKLIA+VT REIVVRDASRFHHFKDG CSCGDYW
Sbjct: 659 QSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score = 1111 bits (2874), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/706 (75%), Positives = 612/706 (86%), Gaps = 5/706 (0%)

Query: 1   MEIPLLRYQSVALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECC 60
           M+IPL R Q+++ DQIQ++C     F+ +++L+ KS  S      ++RK +  F ++ C 
Sbjct: 1   MDIPLSRNQNMSXDQIQSNCGLPHLFSVDEILREKSF-SQRLLPFNRRKRRTPFSQIRCS 59

Query: 61  LMEQGLKPRPKPNKIYTEEL---KESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELF 117
            +EQGL+PRPKP K  T EL   KE+ + +TQ++KPS+ +C QIEKLV  KRY EALELF
Sbjct: 60  SLEQGLQPRPKP-KPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELF 118

Query: 118 EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR 177
           EILE  G +D+ S TYDAL+SACIGL+SIR VK+VF+YM+++G +PD Y+RNRVLLMHV+
Sbjct: 119 EILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVK 178

Query: 178 CGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATM 237
           CGMMIDARRLFDEMPE+N++S N II G++D+GDY EAF LFL +W+ FSD GSR F TM
Sbjct: 179 CGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTM 238

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           IRASAGL LI  G+QLHSC+LK G G +VFV+CALIDMYSKCGSIEDAQ VFD+M EKTT
Sbjct: 239 IRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTT 298

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           VGWN+IIAGYALHGYSEEAL +YYEMRDSGVK+D+FTFS+IIRIC RLASLEHAKQAHAG
Sbjct: 299 VGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAG 358

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           LVRHGFGLDIVAN+ALVD YSKWGRIEDA+HVFD M  KNVISWNALIAGYGNHGRG EA
Sbjct: 359 LVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEA 418

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           VE+FE+ML  GM PNHVTFLAVLSACS SGLS+RGWEIF+SMSRDHKIKPRAMHYACMIE
Sbjct: 419 VEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIE 478

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
           LLGREGLLDEAFALI+ APFK T NMWAALLTACRV+ N ELGKFAAEKLYGM PEKLSN
Sbjct: 479 LLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSN 538

Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI 597
           YVVLLNIYN SG+L+EAA VI+TL+R+GLRMLPACSWIE+KKQP+ F+SGD+ H Q+KEI
Sbjct: 539 YVVLLNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSWIEIKKQPYGFISGDKCHAQSKEI 598

Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIV 657
           Y+K+D +MLEISKHGYVP+ K LLPDVDEQE+RVL YHSEKLA+AFGLINTSDWTPLQIV
Sbjct: 599 YQKLDELMLEISKHGYVPQXKFLLPDVDEQEERVLLYHSEKLAIAFGLINTSDWTPLQIV 658

Query: 658 QSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           QSHRIC DCH+AIKLIA+VT REIVVRDASRFHHFKDG CSCGDYW
Sbjct: 659 QSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 704


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score = 1046 bits (2705), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 510/710 (71%), Positives = 599/710 (84%), Gaps = 13/710 (1%)

Query: 1   MEIPLLRYQSVALDQIQ-NSCSF-SCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVE 58
           ME+PL RYQ+   D++Q NS SF S  ++ + +    S LS      + RK++ SF  ++
Sbjct: 3   MELPLSRYQNYVYDRLQCNSTSFFSLRYSDSDLFTKTSFLS------NPRKYRNSFCWIK 56

Query: 59  CCLMEQGLKPRPKP----NKIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREAL 114
           C   EQGL+PRP+P    +K+   + KE+ L +T +KK S GICSQIEKLVL K+YR+AL
Sbjct: 57  CSSFEQGLRPRPRPQPKPSKLDVGDRKETPLKETHVKKSSVGICSQIEKLVLCKKYRDAL 116

Query: 115 ELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLM 174
           E+FEI E E GF VG STYDALI+ACIGL+SIR VKR+ +YM+  GFEPD YMRNRVLLM
Sbjct: 117 EMFEIFELEDGFHVGYSTYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLM 176

Query: 175 HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF 234
           HV+CGMMIDA RLFDEMP RN VS   II+G +DSG+Y+EAF LF+ + EEF DCG RTF
Sbjct: 177 HVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTF 236

Query: 235 ATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE 294
           ATMIRASAGLE+I  G+QLHSCA+K G G ++FVSCALIDMYSKCGS+EDA  VFDEM +
Sbjct: 237 ATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPD 296

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
           KT VGWN+IIAGYALHGYSEEALDLY+EMRDSGVKMDHFTFS+IIRIC+RLAS+  AKQ 
Sbjct: 297 KTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQV 356

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414
           HA LVR+GFGLD+VAN+ALVDFYSKWG+++DARHVFD+M C+N+ISWNALIAGYGNHG G
Sbjct: 357 HASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHG 416

Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474
           EEA+++FE+ML  GM PNHVTFLAVLSACS SGL ERGWEIFQSM+RDHK+KPRAMH+AC
Sbjct: 417 EEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFAC 476

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534
           MIELLGREGLLDEA+ALIR APF+ T NMWAALL ACRV+GNLELGKFAAEKLYGMEPEK
Sbjct: 477 MIELLGREGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEK 536

Query: 535 LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQT 594
           LSNY+VLLNIYNSSGKLKEAA+V +TL+RKGLRMLPACSWIEV  QPH FLSGD+ HVQ 
Sbjct: 537 LSNYIVLLNIYNSSGKLKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHVQI 596

Query: 595 KEIYRKVDRMMLEISKHGYVPEEKT-LLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTP 653
           +++  KVD +ML ISK GYVPEE+  +LPDVDE E+++  YHSEKLA+A+GL+NT + TP
Sbjct: 597 EKVVGKVDELMLNISKLGYVPEEQNFMLPDVDENEEKIRMYHSEKLAIAYGLLNTLEKTP 656

Query: 654 LQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           LQIVQSHRIC DCH+ IKLIAM+T REIV+RDASRFHHF+DG CSCGDYW
Sbjct: 657 LQIVQSHRICSDCHSVIKLIAMITKREIVIRDASRFHHFRDGSCSCGDYW 706


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score = 1038 bits (2685), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/673 (73%), Positives = 569/673 (84%), Gaps = 4/673 (0%)

Query: 33  KGKSLLSGCYFSLDKRKWKRSFQRVECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKK 92
           +G    SG  F+   + W   F R+ C  MEQ LKP+PK  K+   E K + L DTQ++K
Sbjct: 20  RGNLSFSGRCFASKVKNWSLPFSRICCSSMEQRLKPKPK--KVEYRERKVAVLDDTQIRK 77

Query: 93  PSA-GICSQIEKLVLNKRYREALELFEILEFE-GGFDVGSSTYDALISACIGLRSIREVK 150
            S+ G+C QIEKLVL  RYREA+ELFEILE E  GFDVG STYDAL+SAC+GLRSIR VK
Sbjct: 78  TSSSGLCIQIEKLVLCNRYREAMELFEILELEHDGFDVGGSTYDALVSACVGLRSIRGVK 137

Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG 210
           RVF+YM+++GFEPDLY+ NRVL +HV+CG+M+DAR+LFDEMPE+++ S   +I G +DSG
Sbjct: 138 RVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSG 197

Query: 211 DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC 270
           ++ EAF LFL +WEEF+D  SRTF TMIRASAGL L+ VG+Q+HSCALK G GD+ FVSC
Sbjct: 198 NFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSC 257

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
           ALIDMYSKCGSIEDA  VFD+M EKTTVGWN+IIA YALHGYSEEAL  YYEMRDSG K+
Sbjct: 258 ALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKI 317

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
           DHFT S++IRIC RLASLE+AKQAHA LVR G+  DIVAN+ALVDFYSKWGR+EDA HVF
Sbjct: 318 DHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVF 377

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
           ++M  KNVISWNALIAGYGNHG+GEEAVE+FEQML  GM PNHVTFLAVLSACS SGLSE
Sbjct: 378 NRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSGLSE 437

Query: 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
           RGWEIF SMSRDHK+KPRAMHYACM+ELLGREGLLDEA+ LIR APFK T NMWA LLTA
Sbjct: 438 RGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPTTNMWATLLTA 497

Query: 511 CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLP 570
           CR++ NLELGK AAE LYGMEPEKL NY+VLLN+YNSSGKLKEAA V++TL+RKGLRMLP
Sbjct: 498 CRMHENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGVLQTLKRKGLRMLP 557

Query: 571 ACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR 630
           AC+WIEVKKQ + FL GD+SH QTKEIY KV+ MM+EIS+HGYV E K LLPDVDE+EQR
Sbjct: 558 ACTWIEVKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEISRHGYVEENKALLPDVDEEEQR 617

Query: 631 VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFH 690
           +L YHSEKLA+AFGLINT  WTPLQI Q HR+C DCH+AIK IAMVTGREIVVRDASRFH
Sbjct: 618 ILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKFIAMVTGREIVVRDASRFH 677

Query: 691 HFKDGMCSCGDYW 703
           HF+DG CSCGDYW
Sbjct: 678 HFRDGSCSCGDYW 690


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score = 1032 bits (2668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 488/666 (73%), Positives = 568/666 (85%), Gaps = 3/666 (0%)

Query: 40  GCYFSLDKRKWKRSFQRVECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPS-AGIC 98
           GC F+   R     F R+ CC      K +PKP K+   E     L DTQ++K S +G+C
Sbjct: 27  GCCFASKMRFLCNPFSRI-CCSSSMDQKLKPKPKKVEYMERNVPVLEDTQIRKTSPSGLC 85

Query: 99  SQIEKLVLNKRYREALELFEILEFE-GGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           SQIEKLV+  R+REA+ELFEILE E  G+ VG+STYDAL+SAC+GLRSIR VKRVF+YM+
Sbjct: 86  SQIEKLVVCNRHREAMELFEILELEHDGYGVGASTYDALVSACVGLRSIRGVKRVFNYMI 145

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
           ++GFEPDLY+ NRVL MHV+CG+M+DAR+LFDEMPE+++ S   ++ G++D+G++ EAF 
Sbjct: 146 NSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTGNFSEAFR 205

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           LFL +W+EF+D  SRTFATMIRASAGL L+ VGKQ+HSCALK G GD+ FVSCALIDMYS
Sbjct: 206 LFLCMWKEFNDGRSRTFATMIRASAGLGLVQVGKQIHSCALKRGVGDDHFVSCALIDMYS 265

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           KCGSIEDA  VFD+M EKTTVGWN+IIA YALHGYSEEAL LY+EMRDSG  +DHFT S+
Sbjct: 266 KCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSLYFEMRDSGTTVDHFTISI 325

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           +IRIC RLASLEHAKQAHA LVRHGF  DIVAN+ALVDFYSKWGR+EDARHVF++M  KN
Sbjct: 326 VIRICARLASLEHAKQAHAALVRHGFATDIVANTALVDFYSKWGRMEDARHVFNRMRHKN 385

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           VISWNALIAGYGNHG+G+EAVE+FEQML  G+ P HVTFLAVLSACS SGLS+RGWEIF 
Sbjct: 386 VISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSACSYSGLSQRGWEIFY 445

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
           SM RDHK+KPRAMHYACMIELLGRE LLDEA+ALIR APFK T NMWAALLTACR++ NL
Sbjct: 446 SMKRDHKVKPRAMHYACMIELLGRESLLDEAYALIRTAPFKPTANMWAALLTACRMHKNL 505

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
           ELGK AAEKLYGMEPEKL NY+VLLN+YNSSGKLKEAA +++TL++KGLRMLPACSW+EV
Sbjct: 506 ELGKLAAEKLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGILQTLKKKGLRMLPACSWVEV 565

Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSE 637
           KKQP+ FL GD+SH QTKEIY+KVD +M+EI KHGY  E +TLLPDVDE+EQR+L YHSE
Sbjct: 566 KKQPYAFLCGDKSHSQTKEIYQKVDNLMVEICKHGYAEENETLLPDVDEEEQRILKYHSE 625

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+AFGLINT  WTPLQI Q HR+C DCH+AIKLIAMVTGREIVVRDASRFHHF++G C
Sbjct: 626 KLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKLIAMVTGREIVVRDASRFHHFRNGSC 685

Query: 698 SCGDYW 703
           SCGDYW
Sbjct: 686 SCGDYW 691


>gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera]
          Length = 657

 Score = 1016 bits (2627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/706 (70%), Positives = 572/706 (81%), Gaps = 52/706 (7%)

Query: 1   MEIPLLRYQSVALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECC 60
           M+IPL R Q++++DQIQ++C     F+ +++L+ KS  S      ++RK +  F ++ C 
Sbjct: 1   MDIPLSRNQNMSMDQIQSNCGLPHLFSVDEILREKSF-SQRLLPFNRRKRRTPFSQIRCS 59

Query: 61  LMEQGLKPRPKPNKIYTEEL---KESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELF 117
            +EQGL+PRPKP K  T EL   KE+ + +TQ++KPS+ +C QIEKLV  KRY EALELF
Sbjct: 60  SLEQGLQPRPKP-KPSTIELNVGKEAQVNETQLRKPSSELCGQIEKLVFFKRYHEALELF 118

Query: 118 EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR 177
           EILE  G +D+ S TYDAL+SACIGL+SIR VK+VF+YM+++G +PD Y+RNRVLLMHV+
Sbjct: 119 EILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVK 178

Query: 178 CGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATM 237
           CGMMIDARRLFDEMPE+N++S N II G++D+GDY EAF LFL +W++FSD GSR F TM
Sbjct: 179 CGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTM 238

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           IRASAGL LI  G+QLHSC+LK G G +VFV+CALIDMYSKCGSIEDAQ VFD+M EKTT
Sbjct: 239 IRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTT 298

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           VGWN+IIAGYALHGYSEEAL +YYEMRDSGVK+D+FTFS+IIRIC RLASLEHAKQAHAG
Sbjct: 299 VGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAG 358

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           LVRHGFGLDIVAN+ALVD YSKWGRIEDA+HVFD M  KNVISWNALIAGYGNHGRG EA
Sbjct: 359 LVRHGFGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEA 418

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           VE+FE+ML  GM PNHVTFLAVLSACS SGLS+RGWEIF+SMSRDHKIKPRAMHYACMIE
Sbjct: 419 VEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFESMSRDHKIKPRAMHYACMIE 478

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
           LLGREGLLDEAFALI+ APFK T NMWAALLTACRV+ N ELGKFAAEKLYGM PEKLSN
Sbjct: 479 LLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNFELGKFAAEKLYGMGPEKLSN 538

Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI 597
           YVVLLNIYN SG+L+EAA +                                        
Sbjct: 539 YVVLLNIYNRSGRLEEAAAL---------------------------------------- 558

Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIV 657
                  MLEISKHGYVP++K LLPDVDEQE+RVL YHSEKLA+AFGLINTSDWTPLQIV
Sbjct: 559 -------MLEISKHGYVPQDKFLLPDVDEQEERVLLYHSEKLAIAFGLINTSDWTPLQIV 611

Query: 658 QSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           QSHRIC DCH+AIKLIA+VT REIVVRDASRFHHFKDG CSCGDYW
Sbjct: 612 QSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSCSCGDYW 657


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  960 bits (2482), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/548 (81%), Positives = 493/548 (89%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           M+  GFE D YMRNRVLLMHV+CGMMIDARRLFDEMPERNLVS N II+G++D GD++EA
Sbjct: 1   MIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEA 60

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
           F LFL++WEEFSD GS TFA MIRASAGLELIS+G+QLH+C LKMG GD++FVSCALIDM
Sbjct: 61  FRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDM 120

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           YSKCGSIEDA+ VF+EM EKTTVGWNTIIAGYALHGYSEEALD+YYEMRDSGVKMDHFTF
Sbjct: 121 YSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTF 180

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
           SMI+RIC RLAS+EHAKQAHA L+RHGFG DIVAN+ALVDFYSKWGRIEDARHVFDKM  
Sbjct: 181 SMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMAS 240

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           KNVISWNALI GYGNHGRG EAVELFEQM+   M PNH+TFLAVLSACS SGLSERGWEI
Sbjct: 241 KNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEI 300

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           FQSM RD++IKPRAMHYACMIEL+GREGLLDEA ALIRGAPFK T NMWAALLTACRVN 
Sbjct: 301 FQSMGRDNRIKPRAMHYACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTACRVNE 360

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575
           N ELGKFAAEKLYGMEP+KL+NY+VLLNIYNS+G LKEAA+V+ TL+RKGLRM P CSWI
Sbjct: 361 NFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSWI 420

Query: 576 EVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYH 635
           EVK++PHVFLSGD  H Q KEIY+KVD++MLEISK+GYVP +KTLLPDVDEQE+RV  YH
Sbjct: 421 EVKRRPHVFLSGDNRHPQRKEIYQKVDKLMLEISKYGYVPNQKTLLPDVDEQEERVRLYH 480

Query: 636 SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
           SEKLA+AFGLI+T  W PLQIVQ HRIC DCH AIKLIA VTGREIV+RDA RFHHFK G
Sbjct: 481 SEKLAIAFGLISTPYWAPLQIVQGHRICGDCHEAIKLIARVTGREIVIRDAGRFHHFKHG 540

Query: 696 MCSCGDYW 703
            CSC DYW
Sbjct: 541 HCSCEDYW 548



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 167/347 (48%), Gaps = 42/347 (12%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I  LV    + EA  LF +  +E   D GS T+  +I A  GL  I   +++ +  L  G
Sbjct: 48  ISGLVDVGDFMEAFRLF-LNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMG 106

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              D+++   ++ M+ +CG + DAR +F+EMPE+  V  N IIAG    G   EA    L
Sbjct: 107 IGDDIFVSCALIDMYSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEA----L 162

Query: 221 DLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276
           D++ E  D G +    TF+ ++R  A L  +   KQ H+  ++ GFG ++  + AL+D Y
Sbjct: 163 DMYYEMRDSGVKMDHFTFSMIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFY 222

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
           SK G IEDA+ VFD+M+ K  + WN +I GY  HG   EA++L+ +M    +  +H TF 
Sbjct: 223 SKWGRIEDARHVFDKMASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFL 282

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            ++  C+           H+GL   G+           + +   GR        D  +  
Sbjct: 283 AVLSACS-----------HSGLSERGW-----------EIFQSMGR--------DNRIKP 312

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
             + +  +I   G  G  +EA+ L         +P    + A+L+AC
Sbjct: 313 RAMHYACMIELMGREGLLDEALALIRGAPF---KPTANMWAALLTAC 356


>gi|297795827|ref|XP_002865798.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311633|gb|EFH42057.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 701

 Score =  922 bits (2382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/712 (64%), Positives = 545/712 (76%), Gaps = 20/712 (2%)

Query: 1   MEIPLLRYQSVALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECC 60
           MEIPL RYQS+ LD+I++S S    F   +            FSL  R+WK  F R+ C 
Sbjct: 1   MEIPLARYQSIRLDEIRDSSSNQKVFNFPR-----------KFSLRGRRWKNPFGRITCS 49

Query: 61  LMEQGLKPRPKPN----KIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALEL 116
            + QGLKP+PK      +I  EE K+    DTQ++K    ICSQIEKLVL  R+REA EL
Sbjct: 50  SVVQGLKPKPKLKPEPIRIDVEESKDQVFDDTQIRKSGVRICSQIEKLVLCNRFREAFEL 109

Query: 117 FEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV 176
           FEILE    F VG STYDAL+ ACI L+SIR VKRV+ +++S GFEP+ YM NR+LLMHV
Sbjct: 110 FEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFIISNGFEPEKYMMNRILLMHV 169

Query: 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
           +CGM+IDARRLFDEMPERNL S N II+G ++ G+Y EAF LF  +WEE SDC + TFA 
Sbjct: 170 KCGMIIDARRLFDEMPERNLFSYNSIISGFVNFGNYEEAFELFKLMWEELSDCETHTFAV 229

Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
           M+RASAGL  + VGKQLH CALK+G  DN FVSC LIDMYSKCG IEDA+  F+ M EKT
Sbjct: 230 MLRASAGLWSVYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFESMPEKT 289

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
           TV WN I+AGYALHGYSEEAL L YEMRDSGV MD FT S++IRI TRLA LE  KQAHA
Sbjct: 290 TVAWNNIVAGYALHGYSEEALCLLYEMRDSGVSMDQFTLSIMIRISTRLAKLELTKQAHA 349

Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
            L+R GF  +IVAN+ALVDFYSKWGR++ AR+VFDK+  KN+ISWNAL+ GY NHGRG +
Sbjct: 350 SLIRSGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTD 409

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
           AV LFE+M+   + PNHVTFLAVLSAC+ SGLSE+GWEIF SMS  H IKPRAMHYACMI
Sbjct: 410 AVRLFERMIAAKVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMI 469

Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
           ELLGR+GLLDEA A IR AP KTT NMWAALL ACR+ GNLELG+  AEKLYGM PEKL 
Sbjct: 470 ELLGRDGLLDEAIAFIRRAPLKTTVNMWAALLNACRMQGNLELGRVVAEKLYGMGPEKLG 529

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ--SHVQT 594
           NYVVL N+YNS GK  EAA V+ TL  KGL M+PAC+W+EV  Q H FLSGD+  S+ +T
Sbjct: 530 NYVVLYNMYNSMGKTAEAAGVLETLESKGLSMIPACTWVEVGDQTHSFLSGDRFDSYNET 589

Query: 595 --KEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDW 651
             +E+Y+KVD +M EI ++GY+ EEK LLPDVDE +E+RV  YHSEKLA+A+GL+NT +W
Sbjct: 590 VKREVYQKVDELMEEIYEYGYLAEEKNLLPDVDEKEEERVGRYHSEKLAIAYGLMNTPEW 649

Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            PLQI Q+HRIC DCH  ++ I++VTGRE+VVRDASRFHHFK+G CSCG YW
Sbjct: 650 NPLQITQNHRICKDCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701


>gi|15240665|ref|NP_199850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171167|sp|Q9FK33.1|PP427_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g50390, chloroplastic; Flags: Precursor
 gi|9758921|dbj|BAB09458.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008555|gb|AED95938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  909 bits (2349), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 456/712 (64%), Positives = 546/712 (76%), Gaps = 20/712 (2%)

Query: 1   MEIPLLRYQSVALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECC 60
           MEIPL RYQS+ LD+I++S S             K L     FSL  R+WK  F R+ C 
Sbjct: 1   MEIPLSRYQSIRLDEIRDSSS-----------NPKVLTFPRKFSLRGRRWKNPFGRLSCS 49

Query: 61  LMEQGLKPRPKPN----KIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALEL 116
            + QGLKP+PK      +I  +E K+  L DTQ+ K    ICSQIEKLVL  R+REA EL
Sbjct: 50  SVVQGLKPKPKLKPEPIRIEVKESKDQILDDTQISKSGVTICSQIEKLVLCNRFREAFEL 109

Query: 117 FEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV 176
           FEILE    F VG STYDAL+ ACI L+SIR VKRV+ +M+S GFEP+ YM NR+LLMHV
Sbjct: 110 FEILEIRCSFKVGVSTYDALVEACIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHV 169

Query: 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
           +CGM+IDARRLFDE+PERNL S   II+G ++ G+Y+EAF LF  +WEE SDC + TFA 
Sbjct: 170 KCGMIIDARRLFDEIPERNLYSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAV 229

Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
           M+RASAGL  I VGKQLH CALK+G  DN FVSC LIDMYSKCG IEDA+  F+ M EKT
Sbjct: 230 MLRASAGLGSIYVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKT 289

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
           TV WN +IAGYALHGYSEEAL L Y+MRDSGV +D FT S++IRI T+LA LE  KQAHA
Sbjct: 290 TVAWNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQAHA 349

Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
            L+R+GF  +IVAN+ALVDFYSKWGR++ AR+VFDK+  KN+ISWNAL+ GY NHGRG +
Sbjct: 350 SLIRNGFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTD 409

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
           AV+LFE+M+   + PNHVTFLAVLSAC+ SGLSE+GWEIF SMS  H IKPRAMHYACMI
Sbjct: 410 AVKLFEKMIAANVAPNHVTFLAVLSACAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMI 469

Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
           ELLGR+GLLDEA A IR AP KTT NMWAALL ACR+  NLELG+  AEKLYGM PEKL 
Sbjct: 470 ELLGRDGLLDEAIAFIRRAPLKTTVNMWAALLNACRMQENLELGRVVAEKLYGMGPEKLG 529

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ--SHVQT 594
           NYVV+ N+YNS GK  EAA V+ TL  KGL M+PAC+W+EV  Q H FLSGD+  S+ +T
Sbjct: 530 NYVVMYNMYNSMGKTAEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNET 589

Query: 595 --KEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDW 651
             ++IY+KVD +M EIS++GY  EE+ LLPDVDE +E+RV  YHSEKLA+A+GL+NT +W
Sbjct: 590 VKRQIYQKVDELMEEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEW 649

Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            PLQI Q+HRIC +CH  ++ I++VTGRE+VVRDASRFHHFK+G CSCG YW
Sbjct: 650 NPLQITQNHRICKNCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCGGYW 701


>gi|255540253|ref|XP_002511191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550306|gb|EEF51793.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 538

 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/479 (69%), Positives = 390/479 (81%), Gaps = 9/479 (1%)

Query: 7   RYQSVALDQIQNSCSF-------SCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVEC 59
           RYQS++L QI+N+CSF       S S T ++  K     S   FS + RKW+  F   +C
Sbjct: 38  RYQSISLGQIRNTCSFLPSSSSSSSSSTNHRGFKQIKFFSLYRFSFNSRKWRNPFAINQC 97

Query: 60  CLMEQGLKPRPKP--NKIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELF 117
           C +++GL+PRPKP  +K+  +  + ++  DT++KKPSA ICSQIEKLVL+ +YREALELF
Sbjct: 98  CSLDRGLQPRPKPKPSKVDIDVEEGTNFKDTRIKKPSARICSQIEKLVLHGKYREALELF 157

Query: 118 EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR 177
           EILE +GGFDVGSSTYDAL+SACIGLRSI  VKRV +YMLS GFEPD YM NRVLL+ V+
Sbjct: 158 EILELDGGFDVGSSTYDALVSACIGLRSIPGVKRVLNYMLSNGFEPDQYMANRVLLVQVK 217

Query: 178 CGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATM 237
           CGMMI AR+ FDEMPERNLVS N II+G++D GDY EAF LFL +WEEFSD GSRTFATM
Sbjct: 218 CGMMIHARKWFDEMPERNLVSWNTIISGLVDMGDYKEAFRLFLIMWEEFSDAGSRTFATM 277

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           I+ASAGL  IS+G+QLHSCALKM  GD++FVSCALIDMY KCGSIEDA  VFDEM E+  
Sbjct: 278 IQASAGLGWISIGRQLHSCALKMEVGDDIFVSCALIDMYGKCGSIEDAHCVFDEMPERNI 337

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           V WNTIIAGYALHGYSEEALD+ YEMR+SGV+MDHFTFS+++RIC RLASL +AKQAHA 
Sbjct: 338 VAWNTIIAGYALHGYSEEALDMVYEMRNSGVRMDHFTFSIVVRICARLASLNYAKQAHAS 397

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           L+RHGFG DIVANSALVDFYSKWGR+E ARHVFD+M CKNVISWNALIAGYGNHG+G++A
Sbjct: 398 LLRHGFGSDIVANSALVDFYSKWGRVETARHVFDQMPCKNVISWNALIAGYGNHGKGDDA 457

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
           +ELFEQML   +RPNHVTFLAVLSACS SGLSE GWEIF+SM RD+KI      Y  ++
Sbjct: 458 IELFEQMLQERIRPNHVTFLAVLSACSYSGLSEHGWEIFRSMDRDYKIYNPKFQYQYLV 516


>gi|357139595|ref|XP_003571366.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Brachypodium distachyon]
          Length = 674

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/610 (51%), Positives = 425/610 (69%), Gaps = 3/610 (0%)

Query: 97  ICSQIEKLVLNKRYREALELFEILEFEGGFD-VGSSTYDALISACIGLRSIREVKRVFSY 155
           +C+ IE+LV   R+REA +          F  +   TYDAL++A   LR       V  +
Sbjct: 65  LCAAIERLVAEGRHREACDALREARAGAPFAALPPGTYDALVTAASALREAGSAAAVLWH 124

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           M S+GF+PD YM NRVL M++ CGM+ +AR +F+ MP R+ V+  +++ G++D      A
Sbjct: 125 MESSGFQPDQYMWNRVLGMYLACGMLAEAREVFEGMPARSRVTWGVMMGGLVDGRQPRGA 184

Query: 216 FLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
             LF +LW E     G R     +RA+  L  +  G++LH C  KMG  ++ ++ CAL+D
Sbjct: 185 LALFGELWGEMGVGAGPRVLVVAVRAATALGSVRAGQELHCCVAKMGACEDQYLPCALVD 244

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MYSKCG +++A+ VFD M  ++ V WNT++A Y+LHG +EEA+DLY++M + GV  D FT
Sbjct: 245 MYSKCGRLDEARRVFDGMPWRSVVAWNTMLAAYSLHGCAEEAVDLYHDMCECGVVFDQFT 304

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           FS ++ + +RL  LEHAKQ HA L++ G  +DIV N+ALVD Y KWGR+EDARHVF++M 
Sbjct: 305 FSTMLGVFSRLGLLEHAKQIHASLIQSGLHMDIVGNTALVDLYCKWGRMEDARHVFERMP 364

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
            +N+ISWNALIAGYG HG G  A+E+FE+++  G+ PNHVT+L VL+AC  SG  ++G  
Sbjct: 365 SRNLISWNALIAGYGYHGMGAHAIEMFERLIAEGIAPNHVTYLGVLNACRFSGFIDKGKR 424

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
           IFQ M+++ K KPRAMHYAC+IEL G++GLLDEA+++IR APF  T NMW ALLTACR++
Sbjct: 425 IFQLMAQNPKTKPRAMHYACVIELFGQQGLLDEAYSMIRKAPFTPTANMWGALLTACRIH 484

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
            N++L + AAE+L  MEP+K++NY+VLLN+Y SSG+  EA +V+ TL   GL M  ACSW
Sbjct: 485 KNIQLARLAAEQLLAMEPQKVNNYIVLLNLYISSGRQDEALKVVNTLNGAGLCMSNACSW 544

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVL-S 633
           I VKK+ H F   D  H ++ EIYRK+  +M  + + GYV EE  LLPD+   E +   +
Sbjct: 545 ITVKKKDHRFFFKDSLHPKSSEIYRKLHTLMEALKELGYVAEEDELLPDILPDELKTSKA 604

Query: 634 YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
           YHSE+LAVAFG+I+TS  TPL I QSHR+C DCH  +KL+A VT REIV+RD SRFHHFK
Sbjct: 605 YHSERLAVAFGIISTSPSTPLTINQSHRLCRDCHKVMKLVAQVTKREIVLRDGSRFHHFK 664

Query: 694 DGMCSCGDYW 703
            G CSCGDYW
Sbjct: 665 LGTCSCGDYW 674


>gi|115474729|ref|NP_001060961.1| Os08g0138600 [Oryza sativa Japonica Group]
 gi|38636769|dbj|BAD03012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113622930|dbj|BAF22875.1| Os08g0138600 [Oryza sativa Japonica Group]
          Length = 690

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/612 (51%), Positives = 426/612 (69%), Gaps = 3/612 (0%)

Query: 95  AGICSQIEKLVLNKRYREALELFEILEFEGGF-DVGSSTYDALISACIGLRSIREVKRVF 153
           A +C+ IE L    R+ EA + F        F  + +STYDAL+++   LR       V 
Sbjct: 79  ASLCAGIEALAAEGRHDEARDAFRGARAGAPFTPLPASTYDALVASAAALREPGFAAAVL 138

Query: 154 SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
            ++ S+GFEP     NRVL M + CGM+ +AR++FD MP R+  +   ++ G+ID+G   
Sbjct: 139 WHVESSGFEPGQRAWNRVLRMQLACGMLAEARQVFDGMPARSEATWGTMMGGLIDAGRPR 198

Query: 214 EAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCAL 272
            A  LF +LWEE   D   R     +RA   L     G+QLH C  K G  ++ ++SCAL
Sbjct: 199 GALALFRELWEEVGGDAAPRVVVVAVRAVTALGSARAGQQLHCCVAKTGMYEDQYLSCAL 258

Query: 273 IDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332
           IDMY+KCG +++A+ VFD + +K+ V WN+++A Y+LHG SEEALDLY+ M + GV +D 
Sbjct: 259 IDMYNKCGKLDEARRVFDGVPQKSVVAWNSMLASYSLHGCSEEALDLYHSMCEGGVDIDQ 318

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
           FTFS ++R+ +RL  LEHAKQAHAGL++ G  LDIV N+ALVD Y KWG +EDAR+VF++
Sbjct: 319 FTFSTMLRVFSRLGLLEHAKQAHAGLIQTGLPLDIVGNTALVDLYCKWGLMEDARNVFER 378

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           M  +N+ISWNALIAGYG HG G++A+E+FE+++  G+ PNHVTFLAVL+AC  SG  E G
Sbjct: 379 MPIRNLISWNALIAGYGYHGMGQKAIEMFEELIAEGIAPNHVTFLAVLNACRFSGFVEEG 438

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACR 512
             IFQ M+++ + KPRAMHYAC+IEL G++G LDEA+++IR APF  T NMW ALLTA R
Sbjct: 439 KRIFQLMTQNQRTKPRAMHYACIIELFGQQGRLDEAYSMIRKAPFIPTANMWGALLTASR 498

Query: 513 VNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPAC 572
           ++ NL+L + +AE+L  MEP+K++NYV LLN+Y +SG+  E ++V+ TL+R+GL +  AC
Sbjct: 499 IHRNLQLARLSAEQLLAMEPQKINNYVELLNLYINSGRQTEVSKVVNTLKRRGLCIHAAC 558

Query: 573 SWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVL 632
           SWI V+K+ H F   D  H Q+ EIYRK+D ++ EI + GYV EE  LLPD+   EQ+  
Sbjct: 559 SWITVRKKDHRFFFKDSLHPQSSEIYRKLDSLLKEIKQLGYVAEENELLPDILPDEQKTS 618

Query: 633 S-YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHH 691
             YHSE+LAVAFGLI+TS  T L++ Q HR+C DCH  +K +  VT REIV+RD SRFHH
Sbjct: 619 KVYHSERLAVAFGLISTSLSTTLRVTQCHRLCHDCHKVMKFVTQVTKREIVIRDGSRFHH 678

Query: 692 FKDGMCSCGDYW 703
           FK G CSCGDYW
Sbjct: 679 FKLGTCSCGDYW 690


>gi|242078125|ref|XP_002443831.1| hypothetical protein SORBIDRAFT_07g002920 [Sorghum bicolor]
 gi|241940181|gb|EES13326.1| hypothetical protein SORBIDRAFT_07g002920 [Sorghum bicolor]
          Length = 688

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 329/654 (50%), Positives = 444/654 (67%), Gaps = 21/654 (3%)

Query: 64  QGLKPRPKPNKIYTEELKESSLPDTQMKKPSA---GICSQIEKLVLNKRYREALELFEIL 120
           + LKPRP+  +       +S +P  + +   A    +C+ IE+     R+ EAL LF + 
Sbjct: 42  EPLKPRPRLPR-------QSPVPARRPRPNPAHLPALCTTIERHAAAGRHAEALHLFRLA 94

Query: 121 EFEGGF-DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG 179
                F  + + TY AL+ A   LR       V  ++ S+GF+ DLY  N VL  ++ CG
Sbjct: 95  RAGFPFTPLPARTYHALLLAAAALREPGAAAAVAWHVESSGFDLDLYTHNHVLRTYLECG 154

Query: 180 MMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD--LWEEFSDCG----SRT 233
           M+ +ARR FD MP+RN V+  +++ G++D G    A  LF +  L EE    G     R+
Sbjct: 155 MLAEARRAFDGMPDRNGVTWGIMMGGLVDRGQPRAALALFREMLLAEEAGGDGDAPPPRS 214

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNV---FVSCALIDMYSKCGSIEDAQGVFD 290
               +RA+        G+QLH C +K G   +V   +++CAL+DMYSKCG I++A+ VFD
Sbjct: 215 LVVALRAATASGSARAGQQLHCCVVKAGACGDVADRYLACALLDMYSKCGLIDEARRVFD 274

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            +   + V WN+++A Y LHG SEEAL+LY EM  S V MD FTFS ++ + +RL  LEH
Sbjct: 275 GLPRASVVAWNSMLAAYVLHGRSEEALELYQEMCRSRVAMDQFTFSTMLGVFSRLGLLEH 334

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
           AKQAHAGL++ G  LDIV N+ALVD Y KWGR+EDAR+VF++M  +N+ISWNALIAGYG 
Sbjct: 335 AKQAHAGLIQRGLPLDIVGNTALVDLYCKWGRMEDARNVFERMPRRNLISWNALIAGYGY 394

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           HG G++A+E+FE+++  G+ PNHVTFLAVL+AC  SGL ++G  IFQ M+ + ++KPRAM
Sbjct: 395 HGMGDKAIEMFERLIAEGVVPNHVTFLAVLNACRFSGLVDKGKRIFQLMTENLRMKPRAM 454

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HYAC+IEL GREGLLDEA+++IR APF  T NMW ALLTA R++ N+ L K AAE+L  M
Sbjct: 455 HYACVIELFGREGLLDEAYSMIRRAPFTPTANMWGALLTASRIHKNMHLAKLAAEQLLAM 514

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           EPEK+++Y VLLN+Y SSG+  +A +V+ TL+RKGL +  AC+WI VKK  H F   D  
Sbjct: 515 EPEKINSYAVLLNLYVSSGRQDDACKVVETLKRKGLYIHNACTWITVKKTDHKFFFKDTL 574

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLS-YHSEKLAVAFGLINTS 649
           H Q+ EIYR++  +M ++ + GYV EE  LLPD+   EQ+V S YHSE+LA+AFGL++T+
Sbjct: 575 HPQSAEIYRRLHTLMKDVREAGYVAEENELLPDIYPDEQKVSSAYHSERLAIAFGLMSTA 634

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             TPL+I QSHR+C DCH  IK +A VT REIVVRD SRFHHFK G+CSCGDYW
Sbjct: 635 PQTPLRINQSHRLCRDCHKVIKFVAEVTKREIVVRDGSRFHHFKLGICSCGDYW 688


>gi|413921338|gb|AFW61270.1| hypothetical protein ZEAMMB73_216321 [Zea mays]
          Length = 687

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 327/656 (49%), Positives = 445/656 (67%), Gaps = 15/656 (2%)

Query: 57  VECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALEL 116
             C    + LKPRP+  +      +  +            +C+ IE+     R+ EAL+L
Sbjct: 38  TSCSSSAEPLKPRPRLPR------QSPAPRPRPNPARLPALCAAIERHAAAGRHAEALDL 91

Query: 117 FEILEFEGGF-DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMH 175
           F +      F  + + TY AL+ A   LR       V  ++ S+GFE DLY  N VL M+
Sbjct: 92  FRLARAAAPFTPLPARTYHALLRAAAALREPGAAAAVAWHVESSGFELDLYTHNHVLRMY 151

Query: 176 VRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRTF 234
           + CGM+ +AR+ FD MP+RN V+  +++ G++D G    A  LF ++W E   D   R+ 
Sbjct: 152 LECGMLAEARQAFDGMPDRNGVTWGIMMGGLVDRGRPRAALALFREMWAEAGGDAPPRSL 211

Query: 235 ATMIRASAGLELISVGKQLHSCALKMGFGDNV---FVSCALIDMYSKCGSIEDAQGVFDE 291
              +RA+A       G+QLH C +K G   +V   +++CAL+DMYSKCG I++A+ VFD 
Sbjct: 212 VVAVRAAASSGSARAGRQLHCCVVKAGACGDVADRYLTCALLDMYSKCGRIDEARRVFDG 271

Query: 292 MSEK---TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           +      T V WN+++A Y LHG+SEEAL+LY +M  + V MD FTFS ++ + +RL  L
Sbjct: 272 LPRPHRTTVVAWNSMLAAYVLHGHSEEALELYQKMCSTHVAMDQFTFSTMLGVFSRLGLL 331

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
           EHAKQAHAGL++ G  LDIV N+ALVD Y KWGR+EDAR+VF++M  +N+ISWNALIAGY
Sbjct: 332 EHAKQAHAGLIQRGLPLDIVGNTALVDLYCKWGRMEDARNVFERMPRRNLISWNALIAGY 391

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
           G HG G++A+E+FE+++  G  PNHVTFLAVL+AC  SGL + G  IFQ M+ + +IKPR
Sbjct: 392 GYHGMGDKAIEMFERLIAEGAVPNHVTFLAVLNACRFSGLVDEGKRIFQLMTENLRIKPR 451

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
           AMHYAC+IEL GREGLLDE++++IR APF  T NMW ALLTA R++ ++ L KF+AE+L 
Sbjct: 452 AMHYACVIELFGREGLLDESYSMIRRAPFTPTANMWGALLTASRIHKSMHLAKFSAEQLL 511

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
            MEPEK+++YVVLLN+Y SSG+   A +V+ TL+RKGL +  ACSWI VKK  H F   D
Sbjct: 512 AMEPEKINSYVVLLNLYVSSGRQDSACKVVETLKRKGLYIGNACSWITVKKTDHRFFFKD 571

Query: 589 QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLIN 647
             H Q+ EIYR++D +M E+ + G+V EE  LLPD+   EQ++  +YHSE+LA+AFGLI+
Sbjct: 572 TLHPQSAEIYRRLDTLMKEVREAGFVAEENELLPDIHPDEQKISRAYHSERLAIAFGLIS 631

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T+  TPL+I QSHR+C DCHN IK ++ VT REI+VRD SRFHHFK G+CSCGDYW
Sbjct: 632 TAPQTPLRISQSHRLCSDCHNLIKFVSRVTKREIIVRDGSRFHHFKLGVCSCGDYW 687


>gi|218200446|gb|EEC82873.1| hypothetical protein OsI_27751 [Oryza sativa Indica Group]
          Length = 678

 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 294/576 (51%), Positives = 401/576 (69%), Gaps = 3/576 (0%)

Query: 95  AGICSQIEKLVLNKRYREALELFEILEFEGGFD-VGSSTYDALISACIGLRSIREVKRVF 153
           A +C+ IE L    R+ EA + F        F  + +STYDAL+++   LR       V 
Sbjct: 77  ASLCAGIEALAAEGRHDEARDAFRGARAGAPFTPLPASTYDALVASAAALREPGFAAAVL 136

Query: 154 SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
            ++ S+GFEP     NRVL M + CGM+ +AR++FD MP R+  +   ++ G+ID+G   
Sbjct: 137 WHVESSGFEPGQRAWNRVLRMQLACGMLAEARQVFDGMPSRSEATWGTMMGGLIDAGRPR 196

Query: 214 EAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCAL 272
            A  LF +LWEE   D   R     +RA   L     G+QLH C  K G  ++ ++SCAL
Sbjct: 197 GALALFRELWEEVGGDAAPRVVVVAVRAVTALGSACAGQQLHCCVAKTGMYEDQYLSCAL 256

Query: 273 IDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332
           IDMY+KCG +++A+ VFD M +K+ V WN+++A Y+LHG SEEALDLY+ M + GV +D 
Sbjct: 257 IDMYNKCGQLDEARRVFDGMPQKSVVAWNSMLASYSLHGCSEEALDLYHSMCEGGVDIDQ 316

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
           FTFS ++R+ +RL  LEHAKQAHAGL++ G  LDIV N+ALVD Y KWG++EDAR+VF++
Sbjct: 317 FTFSTMLRVFSRLGLLEHAKQAHAGLIQRGLPLDIVGNTALVDLYCKWGQMEDARNVFER 376

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           M  +N+ISWNALIAGYG HG G++A+E+FE+++  G+ PNHVTFLAVL+AC  SG  E G
Sbjct: 377 MPIRNLISWNALIAGYGYHGMGQKAIEMFEELIAEGIAPNHVTFLAVLNACRFSGFVEEG 436

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACR 512
             IFQ M+++ + KPRAMHYAC+IEL G++G LDEA+++IR APF  T NMW ALLTA R
Sbjct: 437 KRIFQLMTQNQRTKPRAMHYACIIELFGQQGRLDEAYSMIRKAPFIPTANMWGALLTASR 496

Query: 513 VNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPAC 572
           ++ NL+L + AAE+L  MEP+K +NYVVLLN+Y +SG+  EA++V+ TL+R+GL +  AC
Sbjct: 497 IHKNLQLARLAAEQLLAMEPQKTNNYVVLLNLYINSGRQTEASKVVDTLKRRGLCIHAAC 556

Query: 573 SWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVL 632
           SWI V+K+ H F   D  H Q+ EIYRK+D ++ EI + GYV EE  LLPD+   EQ+  
Sbjct: 557 SWITVRKKDHRFFFKDSLHPQSSEIYRKLDSLLKEIKQLGYVAEENELLPDILPDEQKTS 616

Query: 633 S-YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
             YHSE+LAVAFGLI+TS  T L++ Q HR+C DCH
Sbjct: 617 KVYHSERLAVAFGLISTSLSTTLRVTQCHRLCHDCH 652


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  490 bits (1262), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 233/598 (38%), Positives = 373/598 (62%), Gaps = 2/598 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N +  EAL LF  ++  G     SST  +++  C  L ++ + K++  Y + +G E D+ 
Sbjct: 199 NGQPYEALALFSEMQVNG-IKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVL 257

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N ++ M+ +CG +  A +LF+ MP R++ S N II G   +  + EA   F  +    
Sbjct: 258 VVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRG 317

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
               S T  +++ A A L  +  G+Q+H  A++ GF  N  V  AL++MY+KCG++  A 
Sbjct: 318 IKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAY 377

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +F+ M +K  V WN II+GY+ HG+  EAL L+ EM+  G+K D F    ++  C    
Sbjct: 378 KLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFL 437

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           +LE  KQ H   +R GF  ++V  + LVD Y+K G +  A+ +F++M  ++V+SW  +I 
Sbjct: 438 ALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMIL 497

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
            YG HG GE+A+ LF +M   G + +H+ F A+L+ACS +GL ++G + FQ M  D+ + 
Sbjct: 498 AYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLA 557

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P+  HYAC+++LLGR G LDEA  +I+    +   N+W ALL ACR++ N+ELG+ AA+ 
Sbjct: 558 PKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKH 617

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           L+ ++P+    YV+L NIY  + + ++ A++ + ++ KG++  P CS + V +    FL 
Sbjct: 618 LFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLV 677

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGL 645
           GD++H Q+++IY  ++ +  ++ K GYVP     L DV+E+ ++ +LS HSEKLA++FG+
Sbjct: 678 GDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGI 737

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           INTS   P++I+++ R+C DCHNA K I+ + GREI+VRDA+RFHH K+G CSCGDYW
Sbjct: 738 INTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 182/350 (52%), Gaps = 4/350 (1%)

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL 253
            N V     I G + +G + +A  L+  +     +     F ++I+A      +  G+++
Sbjct: 83  NNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKV 142

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           H   +  GF  +V V  AL  MY+KCGS+E+A+ VFD M ++  V WN IIAGY+ +G  
Sbjct: 143 HEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQP 202

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
            EAL L+ EM+ +G+K +  T   ++ +C  L +LE  KQ H   +R G   D++  + L
Sbjct: 203 YEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGL 262

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           V+ Y+K G +  A  +F++M  ++V SWNA+I GY  + +  EA+  F +M + G++PN 
Sbjct: 263 VNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNS 322

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
           +T ++VL AC+     E+G +I     R    +   +    ++ +  + G ++ A+ L  
Sbjct: 323 ITMVSVLPACAHLFALEQGQQIHGYAIRS-GFESNDVVGNALVNMYAKCGNVNSAYKLFE 381

Query: 494 GAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVL 541
             P K     W A+++    +G+    L  F   +  G++P+  +   VL
Sbjct: 382 RMPKKNVV-AWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVL 430


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/606 (40%), Positives = 383/606 (63%), Gaps = 7/606 (1%)

Query: 101  IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
            ++ L  N++ +EAL    I     G +V    YD++++ CI   +IRE +RV ++M+ T 
Sbjct: 452  LKTLCSNRQLKEALLEMGI----QGLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTC 507

Query: 161  FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            +EP +Y+R R+++++ +C  + DARR+ DEMPERN+VS   +I+G    G   EA  LF+
Sbjct: 508  YEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFV 567

Query: 221  DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            ++    +     TFAT++ +        +G+Q+HS  +K  F  ++FV  +L+DMY+K G
Sbjct: 568  EMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAG 627

Query: 281  SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
             I +A+ VFD + E+  V    II+GYA  G  EEALDL+  ++  G++ ++ T++ ++ 
Sbjct: 628  KICEARRVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLT 687

Query: 341  ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
              + LA+L+H +Q H+ ++R      +V  ++L+D YSK G +  +R +FD M  + VIS
Sbjct: 688  ALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVIS 747

Query: 401  WNALIAGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
            WNA++ GY  HG G EAVELF+ M   N ++P+ VTFLAVLS CS  G+ +RG EIF  M
Sbjct: 748  WNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEM 807

Query: 460  -SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
             ++    +P   HY C+++L GR G ++EAF  I+  PF+ T  +W +LL ACRV+ N+ 
Sbjct: 808  VNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVH 867

Query: 519  LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
            +G+F A +L  +E E   NYV+L N+Y S+G+  +   V   ++ K +   P  SWIE+ 
Sbjct: 868  IGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELD 927

Query: 579  KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSE 637
            +  H F + D+SH + +E++ KV  + ++I + GYVPE   +L DV DEQ++++L  HSE
Sbjct: 928  QTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSE 987

Query: 638  KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
            KLA+AFGLI T   TP++I+++ RIC DCHN  K ++ V GRE+ +RD +RFHH   G C
Sbjct: 988  KLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTC 1047

Query: 698  SCGDYW 703
            SCGDYW
Sbjct: 1048 SCGDYW 1053


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 239/582 (41%), Positives = 372/582 (63%), Gaps = 3/582 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G +V    YD++++ CI   +IRE +RV ++M+ T +EP +Y+R R+++++ +C  + DA
Sbjct: 5   GLEVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDA 64

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           RR+ DEMPERN+VS   +I+G    G   EA  LF+++    +     TFAT++ +    
Sbjct: 65  RRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSS 124

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
               +G+Q+HS  +K  F  ++FV  +L+DMY+K G I +A+ VFD + E+  V    II
Sbjct: 125 SGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAII 184

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           +GYA  G  EEALDL+  ++  G++ ++ T++ ++   + LA+L+H +Q H+ ++R    
Sbjct: 185 SGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLP 244

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
             +V  ++L+D YSK G +  +R +FD M  + VISWNA++ GY  HG G EAVELF+ M
Sbjct: 245 FYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLM 304

Query: 425 L-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM-SRDHKIKPRAMHYACMIELLGRE 482
              N ++P+ VTFLAVLS CS  G+ +RG EIF  M ++    +P   HY C+++L GR 
Sbjct: 305 KEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRA 364

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
           G ++EAF  I+  PF+ T  +W +LL ACRV+ N+ +G+F A +L  +E E   NYV+L 
Sbjct: 365 GRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILS 424

Query: 543 NIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVD 602
           N+Y S+G+  +   V   ++ K +   P  SWIE+ +  H F + D+SH + +E++ KV 
Sbjct: 425 NLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVR 484

Query: 603 RMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHR 661
            + ++I + GYVPE   +L DV DEQ++++L  HSEKLA+AFGLI T   TP++I+++ R
Sbjct: 485 ELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLR 544

Query: 662 ICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           IC DCHN  K ++ V GRE+ +RD +RFHH   G CSCGDYW
Sbjct: 545 ICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/605 (40%), Positives = 384/605 (63%), Gaps = 4/605 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKR-VFSYMLST 159
           I   VL++ + +ALEL   ++   G      T  + + AC G+  ++E+ R + S ++  
Sbjct: 331 IAGCVLHEHHEQALELLGQMK-RSGICPNIFTLSSALKACAGM-GLKELGRQLHSSLMKM 388

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
             E DL++   ++ M+ +C ++ DAR  F+ +PE++L++ N II+G     + +EA  LF
Sbjct: 389 DMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLF 448

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
           +++ +E       T +T+++++AGL+++ V +Q+H  ++K GF  +++V  +LID Y KC
Sbjct: 449 VEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKC 508

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
             +EDA+ +F+E +    V + ++I  YA +G  EEAL L+ EM+D  +K D F  S ++
Sbjct: 509 SHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLL 568

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
             C  L++ E  KQ H  ++++GF LDI A ++LV+ Y+K G I+DA   F ++  + ++
Sbjct: 569 NACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIV 628

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           SW+A+I G   HG G +A++LF QML  G+ PNH+T ++VL AC+ +GL       F+SM
Sbjct: 629 SWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESM 688

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
                 KP   HYACMI+LLGR G ++EA  L+   PF+   ++W ALL A R++ ++EL
Sbjct: 689 EELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVEL 748

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
           G+ AAE L+ +EPEK   +V+L NIY S+GK +  AEV R +R   ++  P  SWIEVK 
Sbjct: 749 GRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKD 808

Query: 580 QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEK 638
           + + FL GD+SH +++EIY K+D +   + K GYVP  +  L DV++ E+ +L Y HSEK
Sbjct: 809 KVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEK 868

Query: 639 LAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCS 698
           LAVAFGLI T    P+++ ++ R+C DCH A K I  +  REI+VRD +RFHHFKDG CS
Sbjct: 869 LAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCS 928

Query: 699 CGDYW 703
           CGDYW
Sbjct: 929 CGDYW 933



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 203/370 (54%), Gaps = 4/370 (1%)

Query: 92  KPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKR 151
           KP+  +   + +   + +    L L +    +G F   S +Y  L+S C   +S+R   +
Sbjct: 22  KPAPKLIQTVPQFSQDPQTTAILNLID----KGNFTPTSVSYSKLLSQCCTTKSLRPGLQ 77

Query: 152 VFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGD 211
           + +++  +G   D  +RN ++ ++ +C     AR+L DE  E +LVS + +I+G   +G 
Sbjct: 78  IHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGL 137

Query: 212 YLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCA 271
              A + F ++      C   TF+++++A + ++ + +GKQ+H   +  GF  +VFV+  
Sbjct: 138 GGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANT 197

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
           L+ MY+KC    D++ +FDE+ E+  V WN + + Y    +  EA+ L+YEM  SG+K +
Sbjct: 198 LVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPN 257

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
            F+ S ++  CT L      K  H  L++ G+  D  + +ALVD Y+K G + DA  VF+
Sbjct: 258 EFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFE 317

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
           K+   +++SWNA+IAG   H   E+A+EL  QM  +G+ PN  T  + L AC+  GL E 
Sbjct: 318 KIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKEL 377

Query: 452 GWEIFQSMSR 461
           G ++  S+ +
Sbjct: 378 GRQLHSSLMK 387



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 182/313 (58%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+ +++ AC  ++ +R  K+V   ++ +GFE D+++ N +++M+ +C   +D++RLFDE+
Sbjct: 159 TFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI 218

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           PERN+VS N + +  +      EA  LF ++          + ++M+ A  GL   S GK
Sbjct: 219 PERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGK 278

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            +H   +K+G+  + F + AL+DMY+K G + DA  VF+++ +   V WN +IAG  LH 
Sbjct: 279 IIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHE 338

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
           + E+AL+L  +M+ SG+  + FT S  ++ C  +   E  +Q H+ L++     D+  + 
Sbjct: 339 HHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSV 398

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
            LVD YSK   +EDAR  F+ +  K++I+WNA+I+GY  +    EA+ LF +M   G+  
Sbjct: 399 GLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGF 458

Query: 432 NHVTFLAVLSACS 444
           N  T   +L + +
Sbjct: 459 NQTTLSTILKSTA 471


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/581 (40%), Positives = 373/581 (64%), Gaps = 9/581 (1%)

Query: 132 TYDALISACI-------GLRSIREVKR-VFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183
           +++A+I+ C+        L  + ++KR + S ++    E DL++   ++ M+ +C ++ D
Sbjct: 326 SWNAVIAGCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLED 385

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           AR  F+ +PE++L++ N II+G     + +EA  LF+++ +E       T +T+++++AG
Sbjct: 386 ARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAG 445

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L+++ V +Q+H  ++K GF  +++V  +LID Y KC  +EDA+ +F+E +    V + ++
Sbjct: 446 LQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSM 505

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I  YA +G  EEAL L+ EM+D  +K D F  S ++  C  L++ E  KQ H  ++++GF
Sbjct: 506 ITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGF 565

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
            LDI A ++LV+ Y+K G I+DA   F ++  + ++SW+A+I G   HG G +A++LF Q
Sbjct: 566 VLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQ 625

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           ML  G+ PNH+T ++VL AC+ +GL       F+SM      KP   HYACMI+LLGR G
Sbjct: 626 MLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAG 685

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
            ++EA  L+   PF+   ++W ALL A R++ ++ELG+ AAE L+ +EPEK   +V+L N
Sbjct: 686 KINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLAN 745

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           IY S+GK +  AEV R +R   ++  P  SWIEVK + + FL GD+SH +++EIY K+D 
Sbjct: 746 IYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDE 805

Query: 604 MMLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           +   + K GYVP  +  L DV++ E+ +L Y HSEKLAVAFGLI T    P+++ ++ R+
Sbjct: 806 LSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRV 865

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH A K I  +  REI+VRD +RFHHFKDG CSCGDYW
Sbjct: 866 CVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 183/333 (54%), Gaps = 4/333 (1%)

Query: 92  KPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKR 151
           KP+  +   + +   + +    L L +    +G F   S +Y  L+S C   +S+R   +
Sbjct: 22  KPAPKLIQTVPQFSEDPQTTAILNLID----KGNFTPTSVSYSKLLSQCCTTKSLRPGLQ 77

Query: 152 VFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGD 211
           + +++  +G   D  +RN ++ ++ +C     AR+L DE  E +LVS + +I+G   +G 
Sbjct: 78  IHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGL 137

Query: 212 YLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCA 271
              A + F ++      C   TF+++++A + ++ + +GKQ+H   +  GF  +VFV+  
Sbjct: 138 GGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANT 197

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
           L+ MY+KC    D++ +FDE+ E+  V WN + + Y    +  EA+ L+YEM  SG+K +
Sbjct: 198 LVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPN 257

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
            F+ S ++  CT L      K  H  L++ G+  D  + +ALVD Y+K G + DA  VF+
Sbjct: 258 EFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFE 317

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
           K+   +++SWNA+IAG   H   E+A+EL  QM
Sbjct: 318 KIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM 350



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 170/313 (54%), Gaps = 27/313 (8%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+ +++ AC  ++ +R  K+V   ++ +GFE D+++ N +++M+ +C   +D++RLFDE+
Sbjct: 159 TFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEI 218

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           PERN+VS N + +  +      EA  LF ++          + ++M+ A  GL   S GK
Sbjct: 219 PERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGK 278

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            +H   +K+G+  + F + AL+DMY+K G + DA  VF+++ +   V WN +IAG  LH 
Sbjct: 279 IIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHE 338

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
           + E+AL+L  +M+                           +Q H+ L++     D+  + 
Sbjct: 339 HHEQALELLGQMK---------------------------RQLHSSLMKMDMESDLFVSV 371

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
            LVD YSK   +EDAR  F+ +  K++I+WNA+I+GY  +    EA+ LF +M   G+  
Sbjct: 372 GLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGF 431

Query: 432 NHVTFLAVLSACS 444
           N  T   +L + +
Sbjct: 432 NQTTLSTILKSTA 444



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 139/269 (51%), Gaps = 15/269 (5%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A +L   +P+ +       I  +ID G++                  S +++ ++     
Sbjct: 24  APKLIQTVPQFSEDPQTTAILNLIDKGNFTPT---------------SVSYSKLLSQCCT 68

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
            + +  G Q+H+   K G  D+  +   LI++YSKC     A+ + DE SE   V W+ +
Sbjct: 69  TKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSAL 128

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I+GYA +G    AL  ++EM   GVK + FTFS +++ C+ +  L   KQ H  +V  GF
Sbjct: 129 ISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGF 188

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             D+   + LV  Y+K     D++ +FD++  +NV+SWNAL + Y       EAV LF +
Sbjct: 189 EGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYE 248

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           M+L+G++PN  +  ++++AC+    S RG
Sbjct: 249 MVLSGIKPNEFSLSSMVNACTGLRDSSRG 277


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/606 (38%), Positives = 381/606 (62%), Gaps = 2/606 (0%)

Query: 99   SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
            + I  L     + EA E++  ++ EG       TY  L++AC+   ++   + + S ++ 
Sbjct: 416  TMIGGLAEGGNWEEASEIYHQMQREGMMP-NKITYVILLNACVNPTALHWGREIHSRVVK 474

Query: 159  TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
             GF  D+ ++N ++ M+ RCG + DAR LF++M  ++++S   +I G+  SG   EA  +
Sbjct: 475  DGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAV 534

Query: 219  FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
            F D+ +        T+ +++ A +    +  G+++H   ++ G   +  V+  L++MYS 
Sbjct: 535  FQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSM 594

Query: 279  CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            CGS++DA+ VFD M+++  V +N +I GYA H   +EAL L+  +++ G+K D  T+  +
Sbjct: 595  CGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINM 654

Query: 339  IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
            +  C    SLE AK+ H+ +++ G+  D    +ALV  Y+K G   DA  VFDKM+ +NV
Sbjct: 655  LNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNV 714

Query: 399  ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
            ISWNA+I G   HGRG++ ++LFE+M + G++P+ VTF+++LSACS +GL E G   F S
Sbjct: 715  ISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCS 774

Query: 459  MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
            MSRD  I P   HY CM++LLGR G LDE  ALI+  PF+    +W ALL ACR++GN+ 
Sbjct: 775  MSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVP 834

Query: 519  LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
            + + AAE    ++P+  + YV L ++Y ++G    AA++ + + ++G+   P  SWIEV 
Sbjct: 835  VAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVG 894

Query: 579  KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSE 637
             + H F++ D+SH ++++IY ++D++   +   GYVP+ ++++ DVDE E +  + +HSE
Sbjct: 895  DKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSE 954

Query: 638  KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
            +LA+A+GLI+T   TP++I ++ R+C DCH A K I  +  REIV RD +RFHHFKDG+C
Sbjct: 955  RLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVC 1014

Query: 698  SCGDYW 703
            SCGDYW
Sbjct: 1015 SCGDYW 1020



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 131/453 (28%), Positives = 253/453 (55%), Gaps = 6/453 (1%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           A E+F+ ++ EG       TY  +++A  G  +++  K V S++L+ G E DL +   ++
Sbjct: 329 AFEIFQKMQQEGVVP-NRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALV 387

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            M+ +CG   D R++F+++  R+L++ N +I G+ + G++ EA  ++  +  E       
Sbjct: 388 KMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKI 447

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T+  ++ A      +  G+++HS  +K GF  ++ V  ALI MY++CGSI+DA+ +F++M
Sbjct: 448 TYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKM 507

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
             K  + W  +I G A  G   EAL ++ +M+ +G+K +  T++ I+  C+  A+L+  +
Sbjct: 508 VRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGR 567

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           + H  ++  G   D    + LV+ YS  G ++DAR VFD+M  ++++++NA+I GY  H 
Sbjct: 568 RIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHN 627

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
            G+EA++LF+++   G++P+ VT++ +L+AC+ SG  E   EI   + +D  +   ++  
Sbjct: 628 LGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGN 687

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGM 530
           A ++    + G   +A  L+     K     W A++  C  +G  +  L  F   K+ G+
Sbjct: 688 A-LVSTYAKCGSFSDAL-LVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGI 745

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           +P+ +  +V LL+  + +G L+E      ++ R
Sbjct: 746 KPD-IVTFVSLLSACSHAGLLEEGRRYFCSMSR 777



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 243/467 (52%), Gaps = 28/467 (5%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL+L   ++ + G  +G +T   L+S+C    ++   + +    +      D+ + N +
Sbjct: 227 EALKLLREMQ-QHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCI 285

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L M+ +CG + +AR +FD+M  +++VS  +II G  D G    AF +F  + +E      
Sbjct: 286 LNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNR 345

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T+  ++ A +G   +  GK +HS  L  G   ++ V  AL+ MY+KCGS +D + VF++
Sbjct: 346 ITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEK 405

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           +  +  + WNT+I G A  G  EEA ++Y++M+  G+  +  T+ +++  C    +L   
Sbjct: 406 LVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWG 465

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           ++ H+ +V+ GF  DI   +AL+  Y++ G I+DAR +F+KM+ K++ISW A+I G    
Sbjct: 466 REIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKS 525

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G G EA+ +F+ M   G++PN VT+ ++L+ACS     + G  I Q +  +  +   A  
Sbjct: 526 GLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVI-EAGLATDAHV 584

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL---- 527
              ++ +    G + +A            + ++  +     V  N  +G +AA  L    
Sbjct: 585 ANTLVNMYSMCGSVKDA------------RQVFDRMTQRDIVAYNAMIGGYAAHNLGKEA 632

Query: 528 ---------YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
                     G++P+K++ Y+ +LN   +SG L+ A E+   + + G
Sbjct: 633 LKLFDRLQEEGLKPDKVT-YINMLNACANSGSLEWAKEIHSLVLKDG 678



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 138/547 (25%), Positives = 266/547 (48%), Gaps = 57/547 (10%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           A+++ + L+ +G   V S  Y  ++  CI ++ +   + V  +++      D Y  N ++
Sbjct: 125 AMDVVQYLQQQGA-RVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALI 183

Query: 173 LMHVRCGMMIDARRLFDEM--PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
            M+++CG + +AR++++++   ER + S N ++ G +  G   EA  L  ++ +     G
Sbjct: 184 NMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALG 243

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             T   ++ +      +  G+++H  A+K     +V V+  +++MY+KCGSI +A+ VFD
Sbjct: 244 RATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFD 303

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           +M  K+ V W  II GYA  G+SE A +++ +M+  GV  +  T+  ++   +  A+L+ 
Sbjct: 304 KMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKW 363

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            K  H+ ++  G   D+   +ALV  Y+K G  +D R VF+K++ +++I+WN +I G   
Sbjct: 364 GKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD-------- 462
            G  EEA E++ QM   GM PN +T++ +L+AC        G EI   + +D        
Sbjct: 424 GGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISV 483

Query: 463 ----------------------HKIKPRAMHYACMIELLGREGLLDEAFAL---IRGAPF 497
                                   ++   + +  MI  L + GL  EA A+   ++ A  
Sbjct: 484 QNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGL 543

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLY--GMEPE-KLSNYVVLLNIYNSSGKLKEA 554
           K  +  + ++L AC     L+ G+   +++   G+  +  ++N   L+N+Y+  G +K+A
Sbjct: 544 KPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVAN--TLVNMYSMCGSVKDA 601

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
            +V   + ++ +    A             + G  +H   KE  +  DR+  E    G  
Sbjct: 602 RQVFDRMTQRDIVAYNA------------MIGGYAAHNLGKEALKLFDRLQEE----GLK 645

Query: 615 PEEKTLL 621
           P++ T +
Sbjct: 646 PDKVTYI 652



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/247 (23%), Positives = 120/247 (48%), Gaps = 15/247 (6%)

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
           + A+D+   ++  G +++   +  +++ C  +  L   ++ H  +++H   LD    +AL
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182

Query: 374 VDFYSKWGRIEDARHVFDKM--LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           ++ Y + G IE+AR V++K+    + V SWNA++ GY  +G  EEA++L  +M  +G+  
Sbjct: 183 INMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLAL 242

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH----YACMIELLGREGLLDE 487
              T + +LS+C      E G EI         +K R +       C++ +  + G + E
Sbjct: 243 GRATTMRLLSSCKSPSALECGREIHVE-----AMKARLLFDVNVANCILNMYAKCGSIHE 297

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELG--KFAAEKLYGMEPEKLSNYVVLLNIY 545
           A  +      K+  + W  ++      G+ E+    F   +  G+ P +++ Y+ +LN +
Sbjct: 298 AREVFDKMETKSVVS-WTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRIT-YINVLNAF 355

Query: 546 NSSGKLK 552
           +    LK
Sbjct: 356 SGPAALK 362


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 263/668 (39%), Positives = 381/668 (57%), Gaps = 51/668 (7%)

Query: 76  YTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDA 135
           +++ L    +PD ++   +   C+ +  L   K  R+   +  +     GFD  S    +
Sbjct: 102 FSQMLTRGLMPDNRVLPSAVKACAGLSAL---KPARQVHGIASV----SGFDSDSFVQSS 154

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER- 194
           L+   I    IR+  RVF  M    FEPD+   + ++  + R G + +A+RLF EM +  
Sbjct: 155 LVHMYIKCNQIRDAHRVFDRM----FEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSG 210

Query: 195 ---NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
              NL+S N +IAG   SG Y EA L+FLD+     +    T ++++ A   LE + +G 
Sbjct: 211 VQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGI 270

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS------------------ 293
            +H   +K G   +  VS ALIDMY KC    +   VFD+M                   
Sbjct: 271 LIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNG 330

Query: 294 -----------------EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
                            E   V W ++IA  + +G   EAL+L+ EM+ +GVK +  T  
Sbjct: 331 QVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIP 390

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            ++  C  +A+L H K AH   +R G   D+   SAL+D Y+K GRI+ +R  FD +  K
Sbjct: 391 CLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTK 450

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           N++ WNA+IAGY  HG+ +EA+E+F+ M  +G +P+ ++F  VLSACS+SGL+E G   F
Sbjct: 451 NLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYF 510

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
            SMS  + I+ R  HYACM+ LL R G L++A+A+IR  P      +W ALL++CRV+ N
Sbjct: 511 NSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNN 570

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
           + LG+ AAEKL+ +EP    NY++L NIY S G   E   V   ++ KGLR  P CSWIE
Sbjct: 571 VSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIE 630

Query: 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYH 635
           VK + H+ L+GD+SH Q  +I  K+D++ +E+ K GY PE   +L DV+EQ+ +++L  H
Sbjct: 631 VKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGH 690

Query: 636 SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
           SEKLAV FGL+NT    PLQ++++ RIC DCH  IK I+    REI VRD +RFHHFK+G
Sbjct: 691 SEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFISSFERREIFVRDTNRFHHFKEG 750

Query: 696 MCSCGDYW 703
            CSCGDYW
Sbjct: 751 ACSCGDYW 758



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 123/477 (25%), Positives = 207/477 (43%), Gaps = 54/477 (11%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           S+ + ++  +++L TG   D ++  ++L  +       DA  + D +PE N+ S + +I 
Sbjct: 28  SLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIY 87

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
                  +  A   F  +        +R   + ++A AGL  +   +Q+H  A   GF  
Sbjct: 88  AFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDS 147

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           + FV  +L+ MY KC  I DA  VFD M E   V W+ ++A YA  G  +EA  L+ EM 
Sbjct: 148 DSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMG 207

Query: 325 DSGVK-----------------------------------MDHFTFSMIIRICTRLASLE 349
           DSGV+                                    D  T S ++     L  L 
Sbjct: 208 DSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLV 267

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
                H  +++ G   D   +SAL+D Y K     +   VFD+M   +V S NA I G  
Sbjct: 268 MGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLS 327

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            +G+ E ++ LF Q+   GM  N V++ ++++ CS++G      E+F+ M +   +KP +
Sbjct: 328 RNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREM-QIAGVKPNS 386

Query: 470 MHYACMIELLGR-----EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           +   C++   G       G     F+L RG    T   + +AL+      G ++  +   
Sbjct: 387 VTIPCLLPACGNIAALMHGKAAHCFSLRRG--ISTDVYVGSALIDMYAKCGRIQASRICF 444

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR--------MLPACS 573
           +   G+  + L  +  ++  Y   GK KEA E+   ++R G +        +L ACS
Sbjct: 445 D---GIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACS 498



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 2/104 (1%)

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           ASL   +QAHA +++ G   D    + L+  Y+      DA  V D +   NV S++ LI
Sbjct: 27  ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLI 86

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449
             +    +   A+  F QML  G+ P++    + + AC  +GLS
Sbjct: 87  YAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKAC--AGLS 128


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 250/639 (39%), Positives = 377/639 (58%), Gaps = 73/639 (11%)

Query: 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER-- 194
           I +C  LR++   +++ ++  ++GF  D  + + +  M+++C  ++DAR+LFD MP+R  
Sbjct: 111 IKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDV 170

Query: 195 ---------------------------------NLVSCNMIIAGMIDSGDYLEAFLLF-L 220
                                            NLVS N ++AG  ++G Y EA  +F +
Sbjct: 171 VVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRM 230

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            L + F   GS T + ++ A   LE + VG Q+H   +K G G + FV  A++DMY KCG
Sbjct: 231 MLVQGFWPDGS-TVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCG 289

Query: 281 SIEDAQGVFDEMSEK-----------------------------------TTVGWNTIIA 305
            +++   VFDE+ E                                      V W +IIA
Sbjct: 290 CVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIA 349

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
             + +G   EAL+L+ +M+  GV+ +  T   +I  C  +++L H K+ H   +R G   
Sbjct: 350 SCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFD 409

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           D+   SAL+D Y+K GRI+ AR  FDKM   N++SWNA++ GY  HG+ +E +E+F  ML
Sbjct: 410 DVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMML 469

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
            +G +P+ VTF  VLSAC+++GL+E GW  + SMS +H I+P+  HYAC++ LL R G L
Sbjct: 470 QSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKL 529

Query: 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
           +EA+++I+  PF+    +W ALL++CRV+ NL LG+ AAEKL+ +EP    NY++L NIY
Sbjct: 530 EEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIY 589

Query: 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
            S G   E   +   ++ KGLR  P  SWIEV  + H+ L+GDQSH Q K+I  K+D++ 
Sbjct: 590 ASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLN 649

Query: 606 LEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICC 664
           +++ K GY+P+   +L DV+EQ+ +++L  HSEKLAV  GL+NTS   PLQ++++ RIC 
Sbjct: 650 MQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICD 709

Query: 665 DCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           DCH  IK+I+ + GREI VRD +RFHHFKDG+CSCGD+W
Sbjct: 710 DCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 177/376 (47%), Gaps = 43/376 (11%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N  Y EA+ +F ++  +G +  GS T   ++ A   L  +    +V  Y++  G   D +
Sbjct: 218 NGFYDEAVGMFRMMLVQGFWPDGS-TVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKF 276

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA-----GMIDS------------ 209
           + + +L M+ +CG + +  R+FDE+ E  + S N  +      GM+D+            
Sbjct: 277 VVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQK 336

Query: 210 ------------------GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
                             G  LEA  LF D+     +  + T  ++I A   +  +  GK
Sbjct: 337 MELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGK 396

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           ++H  +L+ G  D+V+V  ALIDMY+KCG I+ A+  FD+MS    V WN ++ GYA+HG
Sbjct: 397 EIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHG 456

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV-RHGFGLDIVAN 370
            ++E +++++ M  SG K D  TF+ ++  C +    E   + +  +   HG    +   
Sbjct: 457 KAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHY 516

Query: 371 SALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAG---YGNHGRGEEAVELFEQMLL 426
           + LV   S+ G++E+A  +  +M    +   W AL++    + N   GE A E  +   L
Sbjct: 517 ACLVTLLSRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAE--KLFFL 574

Query: 427 NGMRPNHVTFLAVLSA 442
               P +   L+ + A
Sbjct: 575 EPTNPGNYILLSNIYA 590



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 105/216 (48%), Gaps = 3/216 (1%)

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ---GVFDEMSEKTTVGWNTI 303
           +S  +Q H+  L++    +  ++ +L+  Y+   S+   Q    +   +   T   ++++
Sbjct: 16  LSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSL 75

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I  +A   +    L  +  +    +  D F     I+ C  L +L+  +Q HA     GF
Sbjct: 76  IHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGF 135

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             D +  S+L   Y K  RI DAR +FD+M  ++V+ W+A+IAGY   G  EEA ELF +
Sbjct: 136 LTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGE 195

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           M   G+ PN V++  +L+    +G  +    +F+ M
Sbjct: 196 MRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMM 231



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 99/215 (46%), Gaps = 9/215 (4%)

Query: 98  CSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           CSQ      N +  EALELF  ++   G +  + T  +LI AC  + ++   K +  + L
Sbjct: 351 CSQ------NGKDLEALELFRDMQ-AYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSL 403

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
             G   D+Y+ + ++ M+ +CG +  ARR FD+M   NLVS N ++ G    G   E   
Sbjct: 404 RRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETME 463

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMY 276
           +F  + +        TF  ++ A A   L   G +  +S + + G    +     L+ + 
Sbjct: 464 MFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLL 523

Query: 277 SKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALH 310
           S+ G +E+A  +  EM  E     W  +++   +H
Sbjct: 524 SRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVH 558


>gi|222639882|gb|EEE68014.1| hypothetical protein OsJ_25982 [Oryza sativa Japonica Group]
          Length = 594

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/496 (48%), Positives = 331/496 (66%), Gaps = 45/496 (9%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSR 232
           +H+ CGM+ +AR++FD MP R+  +   ++ G+ID+G    A  LF +LWEE   D   R
Sbjct: 116 VHLACGMLAEARQVFDGMPARSEATWGTMMGGLIDAGRPRGALALFRELWEEVGGDAAPR 175

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
                +RA   L     G+QLH C  K G  ++ ++SCALIDMY+KCG +++A+ VFD +
Sbjct: 176 VVVVAVRAVTALGSARAGQQLHCCVAKTGMYEDQYLSCALIDMYNKCGKLDEARRVFDGV 235

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            +K+ V WN+++A Y+LHG SEEALDLY+ M + GV +D FTFS ++R+ +RL  LEHAK
Sbjct: 236 PQKSVVAWNSMLASYSLHGCSEEALDLYHSMCEGGVDIDQFTFSTMLRVFSRLGLLEHAK 295

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           QAHAGL++ G  LDIV N+ALVD Y KWG +EDAR+VF++M  +N+ISWNALIAGYG HG
Sbjct: 296 QAHAGLIQTGLPLDIVGNTALVDLYCKWGLMEDARNVFERMPIRNLISWNALIAGYGYHG 355

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
            G++A+E+FE+++  G+ PNHVTFLAVL+AC  SG  E G  IFQ M+++ + KPRAMHY
Sbjct: 356 MGQKAIEMFEELIAEGIAPNHVTFLAVLNACRFSGFVEEGKRIFQLMTQNQRTKPRAMHY 415

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532
           AC+IEL G++G LDEA+++IR APF  T NMW ALLTA R++ NL+L + +AE+L  MEP
Sbjct: 416 ACIIELFGQQGRLDEAYSMIRKAPFIPTANMWGALLTASRIHRNLQLARLSAEQLLAMEP 475

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHV 592
           +K++NYV LLN+Y +SG           LR +                            
Sbjct: 476 QKINNYVELLNLYINSGD---------RLRSQ---------------------------- 498

Query: 593 QTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLS-YHSEKLAVAFGLINTSDW 651
                 RK+D ++ EI + GYV EE  LLPD+   EQ+    YHSE+LAVAFGLI+TS  
Sbjct: 499 ------RKLDSLLKEIKQLGYVAEENELLPDILPDEQKTSKVYHSERLAVAFGLISTSLS 552

Query: 652 TPLQIVQSHRICCDCH 667
           T L++ Q HR+C DCH
Sbjct: 553 TTLRVTQCHRLCHDCH 568



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 164/334 (49%), Gaps = 4/334 (1%)

Query: 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP 163
           L+   R R AL LF  L  E G D         + A   L S R  +++   +  TG   
Sbjct: 148 LIDAGRPRGALALFRELWEEVGGDAAPRVVVVAVRAVTALGSARAGQQLHCCVAKTGMYE 207

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D Y+   ++ M+ +CG + +ARR+FD +P++++V+ N ++A     G   EA  L+  + 
Sbjct: 208 DQYLSCALIDMYNKCGKLDEARRVFDGVPQKSVVAWNSMLASYSLHGCSEEALDLYHSMC 267

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
           E   D    TF+TM+R  + L L+   KQ H+  ++ G   ++  + AL+D+Y K G +E
Sbjct: 268 EGGVDIDQFTFSTMLRVFSRLGLLEHAKQAHAGLIQTGLPLDIVGNTALVDLYCKWGLME 327

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
           DA+ VF+ M  +  + WN +IAGY  HG  ++A++++ E+   G+  +H TF  ++  C 
Sbjct: 328 DARNVFERMPIRNLISWNALIAGYGYHGMGQKAIEMFEELIAEGIAPNHVTFLAVLNACR 387

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSA-LVDFYSKWGRIEDARHVFDKM-LCKNVISW 401
               +E  K+    + ++        + A +++ + + GR+++A  +  K         W
Sbjct: 388 FSGFVEEGKRIFQLMTQNQRTKPRAMHYACIIELFGQQGRLDEAYSMIRKAPFIPTANMW 447

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            AL+     H   + A    EQ+L   M P  + 
Sbjct: 448 GALLTASRIHRNLQLARLSAEQLL--AMEPQKIN 479


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 239/577 (41%), Positives = 368/577 (63%), Gaps = 9/577 (1%)

Query: 128 VGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL 187
           VGSS  D  + A +GL S+    +VF  +     E ++ M N ++   +R GM+ D++RL
Sbjct: 175 VGSSLVD--MYAKMGLVSV--ASQVFDEVQ----ERNVVMYNTMITGLLRSGMVKDSKRL 226

Query: 188 FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI 247
           F  M ER+ +S   +I G+I +G   EA  LF D+ +E       TF +++ A  GL  +
Sbjct: 227 FHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRAL 286

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
             GK++H+  ++ G+  NVFV  AL+DMY KC S+  A+ VF  M+ K  V W  ++ GY
Sbjct: 287 KEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGY 346

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
             +G+SEEA+ ++ +M+ +G++ D FT   +I  C  LASLE   Q H   +  G    I
Sbjct: 347 GQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFI 406

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
             ++AL+  Y K G IED+  +FD+M  ++ +SW AL++GY   G+  E ++LFE+ML+ 
Sbjct: 407 TVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQ 466

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G++P+ VTF+AVLSACSR+GL ERG + F+SM +DH I P + HY CMI+L GR G L+E
Sbjct: 467 GLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEE 526

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A   I   PF      WA LL++CR+ GN E+GK+AAE L  ++P+  + Y++L +IY +
Sbjct: 527 AKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAA 586

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
            GK    A++ R +R KG R  P  SWI+ K + ++F + DQS   + +IY +++++  +
Sbjct: 587 KGKWSNVAQLRRGMREKGARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHK 646

Query: 608 ISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
           + + GYVP+  ++L DV++ E+ ++L++HSEKLA+AFGL+      P+++V++ R+C DC
Sbjct: 647 MIEEGYVPDASSVLHDVEDSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDC 706

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           HNA K I+ ++ REI+VRDA RFH FKDG CSCGD+W
Sbjct: 707 HNATKYISKISQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/465 (27%), Positives = 228/465 (49%), Gaps = 41/465 (8%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y+ LI+A   L +I   + VF  M     +P+ +  N +L  + + G +   + +F  MP
Sbjct: 43  YNNLINAYSKLGNITYARHVFDKMP----QPNSFSWNTMLSAYSKSGDLSTMQEIFSIMP 98

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE-FSDCGSRTFATMIRASAGLELISVGK 251
            R+ VS N +I+G +  G  +EA   +  + ++   +    TF+TM+   +    + +G+
Sbjct: 99  NRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTMLLLVSSQGCVDLGR 158

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE-------------------- 291
           Q+H   +K GFG  VFV  +L+DMY+K G +  A  VFDE                    
Sbjct: 159 QIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRSG 218

Query: 292 -----------MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
                      M E+ ++ W T+I G   +G   EA+DL+ +MR  G+ MD +TF  ++ 
Sbjct: 219 MVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLT 278

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C  L +L+  K+ H  ++R G+  ++   SALVD Y K   +  A  VF +M  KNV+S
Sbjct: 279 ACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVS 338

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           W A++ GYG +G  EEAV +F  M  NG+ P+  T  +V+S+C+     E G + F   +
Sbjct: 339 WTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQ-FHCQA 397

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG--NLE 518
               +         +I L G+ G ++++  L     F+   + W AL++     G  N  
Sbjct: 398 LVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVS-WTALVSGYAQFGKANET 456

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           +  F    + G++P+ ++ ++ +L+  + +G ++   +   ++ +
Sbjct: 457 IDLFERMLVQGLKPDAVT-FIAVLSACSRAGLVERGQQYFESMLK 500



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 191/376 (50%), Gaps = 17/376 (4%)

Query: 91  KKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVK 150
           ++ S    + I  L+ N    EA++LF  +  EG   +   T+ ++++AC GLR+++E K
Sbjct: 232 ERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEG-MAMDQYTFGSVLTACGGLRALKEGK 290

Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG 210
            + + ++ +G+  ++++ + ++ M+ +C  +  A  +F  M  +N+VS   ++ G   +G
Sbjct: 291 EIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNG 350

Query: 211 DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC 270
              EA  +F D+     +    T  ++I + A L  +  G Q H  AL  G    + VS 
Sbjct: 351 FSEEAVRVFCDMQRNGIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSN 410

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
           ALI +Y KCGSIED+  +FDEMS +  V W  +++GYA  G + E +DL+  M   G+K 
Sbjct: 411 ALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKP 470

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHV 389
           D  TF  ++  C+R   +E  +Q    +++ HG        + ++D + + GR+E+A++ 
Sbjct: 471 DAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNF 530

Query: 390 FDKM-LCKNVISWNALIAG---YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS- 444
            +KM    + I W  L++    YGN   G+ A E    + L+   P     L+ + A   
Sbjct: 531 INKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESL--LELDPQNPAGYILLSSIYAAKG 588

Query: 445 --------RSGLSERG 452
                   R G+ E+G
Sbjct: 589 KWSNVAQLRRGMREKG 604


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/624 (38%), Positives = 381/624 (61%), Gaps = 32/624 (5%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +A+ +++++  +   ++   T+  ++  C   R +   +++   +L  GF  D+++ + +
Sbjct: 120 DAVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPL 179

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF------------ 219
           + M+ + G++ DA+R FDEMPERN+V CN +I G++  G   E+  LF            
Sbjct: 180 VDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWT 239

Query: 220 ---------------LDLWEEFSDCG----SRTFATMIRASAGLELISVGKQLHSCALKM 260
                          LD++ E    G      TF +++ A   L  +  GKQ+H+  ++ 
Sbjct: 240 IMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRT 299

Query: 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY 320
              DNVFV  AL+DMYSKC SI+ A+ VF  M +K  + W  ++ GY  +G+SEEA+ ++
Sbjct: 300 DHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIF 359

Query: 321 YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380
           +EM+ +GV+ D FT   +I  C  LASLE   Q H   +  G    I  ++AL+  Y K 
Sbjct: 360 FEMQRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKC 419

Query: 381 GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
           G  E++  +F +M  ++ +SW AL+AGY   G+  E + LFE+ML +G++P+ VTF+ VL
Sbjct: 420 GSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVL 479

Query: 441 SACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTT 500
           SACSR+GL E+G + F+SM ++H I P   H  C+I+LLGR G L+EA   I   P    
Sbjct: 480 SACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPD 539

Query: 501 KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560
              WA LL++CRV+G++E+GK+AA+ L  +EP+  ++YV+L ++Y S GK  + A++ R 
Sbjct: 540 VVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRG 599

Query: 561 LRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTL 620
           +R K +R  P  SWI+ K + HVF + DQS     +IY +++++  ++ + GYVP+  ++
Sbjct: 600 MRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSV 659

Query: 621 LPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGR 679
           L DV+E E+ ++L++HSEKLA+AFGLI      P++++++ R+C DCHNA K I+ +T R
Sbjct: 660 LHDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQR 719

Query: 680 EIVVRDASRFHHFKDGMCSCGDYW 703
           EI+VRDA RFH FKDG CSCGD+W
Sbjct: 720 EILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/500 (27%), Positives = 234/500 (46%), Gaps = 68/500 (13%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S+ Y +L+  C   ++  + K++   +L T  +P+ ++ N ++  + + G +  A  +FD
Sbjct: 5   SNYYASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFD 64

Query: 190 EMPERNL-------------------------------VSCNMIIAGMIDSGDYLEAFLL 218
            +P+ NL                               VS N+ I+G  + G   +A  +
Sbjct: 65  HIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRV 124

Query: 219 F-LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           + L L +   +    TF+TM+   +    + +G+Q++   LK GFG +VFV   L+DMY+
Sbjct: 125 YKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYT 184

Query: 278 KCGSIEDAQGVFDEMSEKTTV-------------------------------GWNTIIAG 306
           K G I DA+  FDEM E+  V                                W  +I G
Sbjct: 185 KLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITG 244

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
              +G   EALD++ EMR +G  MD FTF  ++  C  L +L   KQ HA ++R     +
Sbjct: 245 LMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDN 304

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +   SALVD YSK   I+ A  VF +M  KNVISW A++ GYG +G  EEAV++F +M  
Sbjct: 305 VFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQR 364

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
           NG+ P+  T  +V+S+C+     E G + F   +    +         +I L G+ G  +
Sbjct: 365 NGVEPDDFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALITLYGKCGSTE 423

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNG--NLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
            +  L      +   + W ALL      G  N  +G F     +G++P+ ++ ++ +L+ 
Sbjct: 424 NSHRLFTEMNIRDEVS-WTALLAGYAQFGKANETIGLFERMLAHGLKPDGVT-FIGVLSA 481

Query: 545 YNSSGKLKEAAEVIRTLRRK 564
            + +G +++  +   ++ ++
Sbjct: 482 CSRAGLVEKGLQYFESMIKE 501



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 96/200 (48%), Gaps = 8/200 (4%)

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN-GM 429
           + ++  YSK G +   + +F+ M  ++ +SWN  I+GY N+G   +AV +++ ML +  M
Sbjct: 75  NTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAM 134

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
             N +TF  +L  CS+    + G +I   + +           + ++++  + GL+ +A 
Sbjct: 135 NLNRITFSTMLILCSKFRCVDLGRQINGQILK-FGFGSDVFVGSPLVDMYTKLGLIYDAK 193

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY-GMEPEKLSNYVVLLNIYNSS 548
                 P +    M   ++T     G +E     +++L+ G++     ++ +++     +
Sbjct: 194 RYFDEMPERNVV-MCNTMITGLMRCGMIE----ESQRLFCGLKERDSISWTIMITGLMQN 248

Query: 549 GKLKEAAEVIRTLRRKGLRM 568
           G  +EA ++ R +R  G  M
Sbjct: 249 GLEREALDMFREMRLAGFAM 268


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 230/582 (39%), Positives = 375/582 (64%), Gaps = 3/582 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G ++    Y+ L++ C+  R++RE +RV ++M+ T + P +Y+  R+++++ +C  +  A
Sbjct: 5   GPEIKFDGYNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCA 64

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R +FDEM ERN+VS   +I+G    G   EA  LF+ +    ++    TFAT++ +  G 
Sbjct: 65  RHVFDEMRERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGF 124

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
               +G+Q+HS   K  + +++FV  +L+DMY+K G I +A+GVF+ + E+  V    II
Sbjct: 125 SGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAII 184

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           +GYA  G  EEAL+L+  ++  G+  ++ T++ ++   + LA+L+H KQ H+ ++R    
Sbjct: 185 SGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELP 244

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
             +V  ++L+D YSK G +  AR +F+ M  + VISWNA++ GY  HG+G E V+LF+ M
Sbjct: 245 FYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLM 304

Query: 425 L-LNGMRPNHVTFLAVLSACSRSGLSERGWEIF-QSMSRDHKIKPRAMHYACMIELLGRE 482
              N ++P+ VTFLAVLS CS  GL ++G E+F + M+   +I+    HY C+I+LLGR 
Sbjct: 305 REENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRA 364

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
           G ++EAF LI+  PF+ T  +W +LL ACRV+ N  +G+F   +L  +EPE   NYV+L 
Sbjct: 365 GRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILS 424

Query: 543 NIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVD 602
           N+Y S+G+ ++   V   +  K +   P  SWIE+ +  H F + D+SH + +E++ KV 
Sbjct: 425 NLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVR 484

Query: 603 RMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHR 661
            ++++  + GYVP++  +L DVD EQ++++L  HSEKLA+AFGLI+TS+  PL+++++ R
Sbjct: 485 ELLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLR 544

Query: 662 ICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           IC DCHN  K ++ V GR++ +RD +RFHH   G+CSCGDYW
Sbjct: 545 ICVDCHNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/543 (42%), Positives = 354/543 (65%), Gaps = 1/543 (0%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           E ++ M N ++   +RC  + D+R+LF +M E++ +S   +IAG   +G   EA  LF +
Sbjct: 205 EKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFRE 264

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           +  E  +    TF +++ A  G+  +  GKQ+H+  ++  + DN+FV  AL+DMY KC S
Sbjct: 265 MRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKS 324

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           I+ A+ VF +M+ K  V W  ++ GY  +GYSEEA+ ++ +M+++G++ D FT   +I  
Sbjct: 325 IKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISS 384

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C  LASLE   Q H   +  G    I  ++ALV  Y K G IED+  +F +M   + +SW
Sbjct: 385 CANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSW 444

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
            AL++GY   G+  E + LFE ML +G +P+ VTF+ VLSACSR+GL ++G +IF+SM +
Sbjct: 445 TALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIK 504

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           +H+I P   HY CMI+L  R G L+EA   I   PF      WA+LL++CR + N+E+GK
Sbjct: 505 EHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGK 564

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
           +AAE L  +EP   ++Y++L +IY + GK +E A + + +R KGLR  P CSWI+ K Q 
Sbjct: 565 WAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIKYKNQV 624

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLA 640
           H+F + DQS+  + +IY +++++  ++ + GYVP+  ++L DVD+ E+ ++L++HSEKLA
Sbjct: 625 HIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSEKIKMLNHHSEKLA 684

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AFGLI      P+++V++ R+C DCHNA K I+ +T REI+VRDA+RFH FKDG CSCG
Sbjct: 685 IAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAARFHLFKDGRCSCG 744

Query: 701 DYW 703
           D+W
Sbjct: 745 DFW 747



 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 132/471 (28%), Positives = 234/471 (49%), Gaps = 42/471 (8%)

Query: 134 DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193
           + L+SA      I   +RVF  M     + +LY  N +L  + +   + +  R+F  MP 
Sbjct: 48  NNLVSAYAKFDRITYARRVFDQMP----QRNLYSWNTLLSSYSKLACLPEMERVFHAMPT 103

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLF-LDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           R++VS N +I+     G  L++   + L L+    +      +TM+  ++    + +G Q
Sbjct: 104 RDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQ 163

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSK-------------------------------CGS 281
           +H   +K GF   VFV   L+DMYSK                               C  
Sbjct: 164 VHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSR 223

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           IED++ +F +M EK ++ W  +IAG+  +G   EA+DL+ EMR   ++MD +TF  ++  
Sbjct: 224 IEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTA 283

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C  + +L+  KQ HA ++R  +  +I   SALVD Y K   I+ A  VF KM CKNV+SW
Sbjct: 284 CGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSW 343

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
            A++ GYG +G  EEAV++F  M  NG+ P+  T  +V+S+C+     E G + F   + 
Sbjct: 344 TAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQ-FHCRAL 402

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG--NLEL 519
              +         ++ L G+ G ++++  L     +   +  W AL++     G  N  L
Sbjct: 403 VSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSY-VDEVSWTALVSGYAQFGKANETL 461

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLP 570
             F +   +G +P+K++ ++ +L+  + +G +++  ++  ++ ++  R++P
Sbjct: 462 RLFESMLAHGFKPDKVT-FIGVLSACSRAGLVQKGNQIFESMIKEH-RIIP 510



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 168/318 (52%), Gaps = 3/318 (0%)

Query: 91  KKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVK 150
           +K S    + I     N   REA++LF  +  E   ++   T+ ++++AC G+ +++E K
Sbjct: 236 EKDSISWTAMIAGFTQNGLDREAIDLFREMRLEN-LEMDQYTFGSVLTACGGVMALQEGK 294

Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG 210
           +V +Y++ T ++ ++++ + ++ M+ +C  +  A  +F +M  +N+VS   ++ G   +G
Sbjct: 295 QVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNG 354

Query: 211 DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC 270
              EA  +F D+     +    T  ++I + A L  +  G Q H  AL  G    + VS 
Sbjct: 355 YSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSN 414

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
           AL+ +Y KCGSIED+  +F EMS    V W  +++GYA  G + E L L+  M   G K 
Sbjct: 415 ALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKP 474

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN-SALVDFYSKWGRIEDARHV 389
           D  TF  ++  C+R   ++   Q    +++    + I  + + ++D +S+ GR+E+AR  
Sbjct: 475 DKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKF 534

Query: 390 FDKM-LCKNVISWNALIA 406
            +KM    + I W +L++
Sbjct: 535 INKMPFSPDAIGWASLLS 552



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 152/374 (40%), Gaps = 70/374 (18%)

Query: 231 SRTFATMIRASAGLELIS---VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
           S+ F +M  ++   EL+      K++H   +K      +F+   L+  Y+K   I  A+ 
Sbjct: 6   SKQFNSMSLSNHYCELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARR 65

Query: 288 VFDEMSEKTTVGWNTI-------------------------------IAGYALHGYSEEA 316
           VFD+M ++    WNT+                               I+ YA  G+  ++
Sbjct: 66  VFDQMPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQS 125

Query: 317 LDLYYEMRDSG-VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           +  Y  M  +G   ++    S ++ + ++   +    Q H  +V+ GF   +   S LVD
Sbjct: 126 VKAYNLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVD 185

Query: 376 FYSKWG-------------------------------RIEDARHVFDKMLCKNVISWNAL 404
            YSK G                               RIED+R +F  M  K+ ISW A+
Sbjct: 186 MYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAM 245

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           IAG+  +G   EA++LF +M L  +  +  TF +VL+AC      + G ++   + R   
Sbjct: 246 IAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRT-D 304

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKF 522
            +      + ++++  +   +  A  + R    K   + W A+L     NG  E  +  F
Sbjct: 305 YQDNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVS-WTAMLVGYGQNGYSEEAVKIF 363

Query: 523 AAEKLYGMEPEKLS 536
              +  G+EP+  +
Sbjct: 364 CDMQNNGIEPDDFT 377


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 228/572 (39%), Positives = 358/572 (62%), Gaps = 2/572 (0%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y+ L+  C   + + + + V +++L + F  D+ M N +L M+ +CG + +AR++F++MP
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           +R+ V+   +I+G        +A L F  +          T +++I+A+A       G Q
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LH   +K GF  NV V  AL+D+Y++ G ++DAQ VFD +  +  V WN +IAG+A    
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
           +E+AL+L+  M   G +  HF+++ +   C+    LE  K  HA +++ G  L   A + 
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT 302

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D Y+K G I DAR +FD++  ++V+SWN+L+  Y  HG G+EAV  FE+M   G+RPN
Sbjct: 303 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPN 362

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            ++FL+VL+ACS SGL + GW  ++ M +D  I P A HY  +++LLGR G L+ A   I
Sbjct: 363 EISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFI 421

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
              P + T  +W ALL ACR++ N ELG +AAE ++ ++P+    +V+L NIY S G+  
Sbjct: 422 EEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWN 481

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
           +AA V + ++  G++  PACSW+E++   H+F++ D+ H Q +EI RK + ++ +I + G
Sbjct: 482 DAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELG 541

Query: 613 YVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           YVP+   ++  VD+QE+ V L YHSEK+A+AF L+NT   + + I ++ R+C DCH AIK
Sbjct: 542 YVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIK 601

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           L + V GREI+VRD +RFHHFKDG CSC DYW
Sbjct: 602 LASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 186/351 (52%), Gaps = 11/351 (3%)

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           DL   +     R + T+++     +L+  G+ +H+  L+  F  ++ +   L++MY+KCG
Sbjct: 50  DLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCG 109

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           S+E+A+ VF++M ++  V W T+I+GY+ H    +AL  + +M   G   + FT S +I+
Sbjct: 110 SLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIK 169

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
                       Q H   V+ GF  ++   SAL+D Y+++G ++DA+ VFD +  +N +S
Sbjct: 170 AAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS 229

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           WNALIAG+      E+A+ELF+ ML +G RP+H ++ ++  ACS +G  E+G  +   M 
Sbjct: 230 WNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMI 289

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
           +  + K  A     ++++  + G + +A  +      +   + W +LLTA   +G    G
Sbjct: 290 KSGE-KLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS-WNSLLTAYAQHG---FG 344

Query: 521 K-----FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           K     F   +  G+ P ++S ++ +L   + SG L E       +++ G+
Sbjct: 345 KEAVWWFEEMRRVGIRPNEIS-FLSVLTACSHSGLLDEGWHYYELMKKDGI 394



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 10/208 (4%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +ALELF+ +    GF     +Y +L  AC     + + K V +YM+ +G +   +  N +
Sbjct: 245 KALELFQGM-LRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTL 303

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L M+ + G + DAR++FD + +R++VS N ++      G   EA   F    EE    G 
Sbjct: 304 LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWF----EEMRRVGI 359

Query: 232 R----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
           R    +F +++ A +   L+  G   +    K G     +    ++D+  + G +  A  
Sbjct: 360 RPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALR 419

Query: 288 VFDEMS-EKTTVGWNTIIAGYALHGYSE 314
             +EM  E T   W  ++    +H  +E
Sbjct: 420 FIEEMPIEPTAAIWKALLNACRMHKNTE 447


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/589 (39%), Positives = 362/589 (61%), Gaps = 3/589 (0%)

Query: 117 FEILEFEGGF-DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMH 175
           F   + EG +  V    Y+ L+  C   + + + + V  +++ + F  DL M N +L M+
Sbjct: 37  FPSNDLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMY 96

Query: 176 VRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFA 235
            +CG + +AR++FD+MPER+ V+   +I+G        +A +LF  +          T +
Sbjct: 97  AKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLS 156

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
           ++I+A+A       G QLH   +K GF  NV V  AL+D+Y++ G ++DAQ VFD +  +
Sbjct: 157 SVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESR 216

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             V WN +IAG+A    +E+AL+L+  M   G +  HF+++ +   C+    LE  K  H
Sbjct: 217 NDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVH 276

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
           A +++ G  L   A + L+D Y+K G I DAR +FD++  ++V+SWN+L+  Y  HG G 
Sbjct: 277 AYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGN 336

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
           EAV  FE+M   G+RPN ++FL+VL+ACS SGL + GW  ++ M +D  I   A HY  +
Sbjct: 337 EAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVLEAWHYVTI 395

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535
           ++LLGR G L+ A   I   P + T  +W ALL ACR++ N ELG +AAE ++ ++P+  
Sbjct: 396 VDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDP 455

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTK 595
             +V+L NIY S G+  +AA V + ++  G++  PACSW+E++   H+F++ D+ H Q +
Sbjct: 456 GPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQRE 515

Query: 596 EIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPL 654
           EI RK + ++ +I + GYVP+   ++  VD+QE+ V L YHSEK+A+AF L+NT   + +
Sbjct: 516 EIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTI 575

Query: 655 QIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            I ++ R+C DCH+AIKL +   GREI+VRD +RFHHFKDG CSC DYW
Sbjct: 576 HIKKNIRVCGDCHSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  470 bits (1210), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/543 (41%), Positives = 351/543 (64%), Gaps = 1/543 (0%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           E ++ M N +++  +RCG + D++RLF EM ER+ +S   +I G   +G   +A  +F +
Sbjct: 206 EKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFRE 265

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           +  E       TF +++ A  G+  +  GKQ+H+  ++  + DN+FV+ AL+DMY KC +
Sbjct: 266 MKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKN 325

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           I+ A+ VF +M+ K  V W  ++ GY  +GYSEEA+  + +M+  G++ D FT   +I  
Sbjct: 326 IKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISS 385

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C  LASLE   Q HA  +  G    I  ++ALV  Y K G IED+  +F+++  K+ ++W
Sbjct: 386 CANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTW 445

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
            AL++GY   G+  E + LFE ML +G++P+ VTF+ VLSACSR+GL E+G +IF+SM  
Sbjct: 446 TALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMIN 505

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           +H I P   HY CMI+L  R G ++EA   I   PF      WA LL++CR  GN+++GK
Sbjct: 506 EHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGK 565

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
           +AAE L  ++P   ++YV+L ++Y + GK +E A + + +R KGLR  P CSWI+ K Q 
Sbjct: 566 WAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWIKYKNQV 625

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLA 640
           HVF + D+S+  + +IY +++++  ++ K GYVP+  ++L DV + E+ ++L++HSEKLA
Sbjct: 626 HVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKMLNHHSEKLA 685

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AFGL+      P+++V++ R+C DCHNA K I+ +T REI+VRD +RFH FKDG CSCG
Sbjct: 686 IAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTARFHLFKDGTCSCG 745

Query: 701 DYW 703
           D+W
Sbjct: 746 DFW 748



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/464 (28%), Positives = 236/464 (50%), Gaps = 44/464 (9%)

Query: 134 DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193
           + LIS+   L SI    +VF  M      P+LY  N +L  + + G + +   LFD MP 
Sbjct: 48  NNLISSYAKLGSIPYACKVFDQMP----HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPR 103

Query: 194 RNLVSCNMIIAGMIDSG---DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           R+ VS N +I+G    G     ++A+ L L     F +    TF+T++  ++    + +G
Sbjct: 104 RDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSF-NLNRITFSTLLILASKRGCVKLG 162

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSK-------------------------------C 279
           +Q+H   +K GF   VFV   L+DMYSK                               C
Sbjct: 163 RQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRC 222

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           G +ED++ +F EM E+ ++ W ++I G+  +G   +A+D++ EM+   ++MD +TF  ++
Sbjct: 223 GRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVL 282

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
             C  + +L+  KQ HA ++R  +  +I   SALVD Y K   I+ A  VF KM CKNV+
Sbjct: 283 TACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVV 342

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           SW A++ GYG +G  EEAV+ F  M   G+ P+  T  +V+S+C+     E G + F + 
Sbjct: 343 SWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQ-FHAR 401

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG--NL 517
           +    +         ++ L G+ G ++++  L     FK  +  W AL++     G  N 
Sbjct: 402 ALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFK-DEVTWTALVSGYAQFGKANE 460

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            +G F +   +G++P+K++ ++ +L+  + +G +++  ++  ++
Sbjct: 461 TIGLFESMLAHGLKPDKVT-FIGVLSACSRAGLVEKGNQIFESM 503



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 180/339 (53%), Gaps = 6/339 (1%)

Query: 91  KKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVK 150
           ++ S    S I     N   R+A+++F  ++ E    +   T+ ++++AC G+ +++E K
Sbjct: 237 ERDSISWTSMITGFTQNGLDRDAIDIFREMKLEN-LQMDQYTFGSVLTACGGVMALQEGK 295

Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG 210
           +V +Y++ T ++ ++++ + ++ M+ +C  +  A  +F +M  +N+VS   ++ G   +G
Sbjct: 296 QVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNG 355

Query: 211 DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC 270
              EA   F D+ +   +    T  ++I + A L  +  G Q H+ AL  G    + VS 
Sbjct: 356 YSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSN 415

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
           AL+ +Y KCGSIED+  +F+E+S K  V W  +++GYA  G + E + L+  M   G+K 
Sbjct: 416 ALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKP 475

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHV 389
           D  TF  ++  C+R   +E   Q    ++  HG        + ++D +S+ GRIE+AR+ 
Sbjct: 476 DKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNF 535

Query: 390 FDKM-LCKNVISWNALIAG---YGNHGRGEEAVELFEQM 424
            +KM    + ISW  L++    YGN   G+ A E   ++
Sbjct: 536 INKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMEL 574


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/581 (39%), Positives = 370/581 (63%), Gaps = 2/581 (0%)

Query: 124 GGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183
           G  +   + Y+ L+  C  L  ++E K V  ++L++ F+ DL ++N +L M+ RCG +  
Sbjct: 68  GSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEG 127

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           ARRLFDEMP R++VS   +I G   +    +A LLF  +  + ++    T +++++    
Sbjct: 128 ARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGY 187

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           +   + G+Q+H+C  K G   NVFV  +L+DMY++CG + +A  VFD++  K  V WN +
Sbjct: 188 MASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNAL 247

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           IAGYA  G  EEAL L+  M+  G +   FT+S ++  C+ +  LE  K  HA L++   
Sbjct: 248 IAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQ 307

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
            L     + L+  Y+K G I DA  VFDK++  +V+S N+++ GY  HG G+EA + F++
Sbjct: 308 KLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDE 367

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           M+  G+ PN +TFL+VL+ACS + L + G   F  M R + I+P+  HYA +++LLGR G
Sbjct: 368 MIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLM-RKYNIEPKVSHYATIVDLLGRAG 426

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
           LLD+A + I   P + T  +W ALL A +++ N E+G +AA++++ ++P     + +L N
Sbjct: 427 LLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLAN 486

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           IY S+G+ ++ A+V + ++  G++  PACSW+EV+   HVF++ D +H Q ++I++  ++
Sbjct: 487 IYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEK 546

Query: 604 MMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           +  +I + GYVP+   +L  VD+QE+ + L YHSEKLA++F L+NT   + ++I+++ R+
Sbjct: 547 LNQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRV 606

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH+AIK +++V  REI+VRD +RFHHF DG CSCGDYW
Sbjct: 607 CGDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 232/606 (38%), Positives = 382/606 (63%), Gaps = 6/606 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSS--TYDALISACIGLRSIREVKRVFSYMLS 158
           I   VL+++   AL+L   +   G + V  S  T  + + AC  +  ++  +++ S ++ 
Sbjct: 261 IAGCVLHEKNDLALKLLGKM---GSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMK 317

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
              EPD ++   ++ M+ +CG++ DAR +FD MP ++++  N II+G  + G  +EA  L
Sbjct: 318 MDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSL 377

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F ++++E  +    T +T+++++AG +     +Q+H+ ++K G+  + +V+ +L+D Y K
Sbjct: 378 FTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGK 437

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           C  +EDA  VF+    +  V + ++I  Y+ +G  EEAL +Y  M+D  +K D F FS +
Sbjct: 438 CCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSL 497

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
              C  L++ E  KQ H  +++ G   D+ A ++LV+ Y+K G I+DA  +F+++  + +
Sbjct: 498 FNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGI 557

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SW+A+I G   HG G +A++LF QML NG+ PNH+T ++VLSAC+ +GL       F  
Sbjct: 558 VSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGL 617

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M +   I P   HYACM+++LGR G LDEA  L++  PF+ +  +W ALL A R++ N+E
Sbjct: 618 MEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIE 677

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           LG+ AAE L  +EPEK   +++L NIY S+G     A+V R+++   ++  P  SWIE+K
Sbjct: 678 LGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELK 737

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSE 637
            + + F+ GD+SH ++KEIY K+D +   ++  GYVP  +T L DV++ +++++L +HSE
Sbjct: 738 DKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSE 797

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLAVAFGLI T    P+++ ++ R+C DCH A K I+ V  REI+VRD +RFHHF+DG C
Sbjct: 798 KLAVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFISKVASREIIVRDINRFHHFRDGSC 857

Query: 698 SCGDYW 703
           SCGDYW
Sbjct: 858 SCGDYW 863



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 121/461 (26%), Positives = 230/461 (49%), Gaps = 11/461 (2%)

Query: 98  CSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           CS    L L K+      + E++    G      +   +++AC GL       +V  Y++
Sbjct: 158 CSLTRNLELGKQIHRVALVTEMIS--TGISPNEFSLSTVLNACAGLEDENYGMKVHGYLI 215

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
             G++ D +  N +L M+ + G    A  +F E+P+ ++VS N +IAG +       A  
Sbjct: 216 KLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALK 275

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           L   +          T ++ ++A A + L+ +G+QLHS  +KM    + FV   LIDMYS
Sbjct: 276 LLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYS 335

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           KCG ++DA+ VFD M  K  + WN+II+GY+  GY  EA+ L+  M   G++ +  T S 
Sbjct: 336 KCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLST 395

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           I++      +    +Q H   ++ G+  D    ++L+D Y K   +EDA  VF+    ++
Sbjct: 396 ILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAED 455

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           ++++ ++I  Y  +G GEEA++++ +M    ++P+   F ++ +AC+     E+G +I  
Sbjct: 456 LVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHV 515

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
            + +   +         ++ +  + G +D+A  +     ++   + W+A++     +G+ 
Sbjct: 516 HVLK-CGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVS-WSAMIGGLAQHGH- 572

Query: 518 ELGKFAAEKLYGMEPEK-LSNYVVLLNIY---NSSGKLKEA 554
             G+ A +  Y M     L N++ L+++    N +G + EA
Sbjct: 573 --GRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEA 611



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 130/524 (24%), Positives = 229/524 (43%), Gaps = 94/524 (17%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW------EEFS 227
           ++ +C     AR+L  +  E +LVS + +I+G + +G   EA L + +++       EF+
Sbjct: 91  LYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFT 150

Query: 228 --------------DCGSR--------------------TFATMIRASAGLELISVGKQL 253
                         + G +                    + +T++ A AGLE  + G ++
Sbjct: 151 FSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKV 210

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           H   +K+G+  + F + AL+DMY+K G  E A  VF E+ +   V WN +IAG  LH  +
Sbjct: 211 HGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKN 270

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
           + AL L  +M    V    FT S  ++ C  +  ++  +Q H+ L++     D      L
Sbjct: 271 DLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGL 330

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           +D YSK G ++DAR VFD M  K+VI WN++I+GY N G   EA+ LF  M   G+  N 
Sbjct: 331 IDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQ 390

Query: 434 VTFLAVLSACS----------------RSGLSERGWE------------IFQSMSRDHKI 465
            T   +L + +                +SG    G+             + +  ++  ++
Sbjct: 391 TTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEV 450

Query: 466 KPRA--MHYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWAALLTACRVNGNLELG 520
            P    + Y  MI    + GL +EA  +   ++    K    ++++L  AC      E G
Sbjct: 451 CPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQG 510

Query: 521 KFAAEKLYGMEPEKLSNYVV---LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
           K     ++ ++   LS+      L+N+Y   G + +A+ +   +  +G+      SW   
Sbjct: 511 K--QIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGI-----VSW--- 560

Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLL 621
                  + G   H       RK  ++  ++ K+G +P   TL+
Sbjct: 561 ----SAMIGGLAQHGHG----RKALQLFYQMLKNGILPNHITLV 596



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 134/278 (48%), Gaps = 42/278 (15%)

Query: 273 IDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332
           +++YSKC     A+ +  + SE   V W+ +I+GY  +G  EEAL  YYEM   G K + 
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 333 FTFSMIIRICTRLASLEHAKQAH---------------------------AG-------- 357
           FTFS +++ C+   +LE  KQ H                           AG        
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 358 -----LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
                L++ G+  D  + +AL+D Y+K G  E A  VF ++   +++SWNA+IAG   H 
Sbjct: 209 KVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHE 268

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
           + + A++L  +M    + P+  T  + L AC+  GL + G ++  ++ +   ++P +   
Sbjct: 269 KNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMK-MDMEPDSFVG 327

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
             +I++  + GLL +A  +    P K    +W ++++ 
Sbjct: 328 VGLIDMYSKCGLLQDARMVFDLMPXKDVI-VWNSIISG 364


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/595 (38%), Positives = 372/595 (62%), Gaps = 2/595 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + EA E++  ++ EG       TY  L++AC+   ++   K + S +   GF  D+ ++N
Sbjct: 309 WEEASEVYNQMQREGVMP-NKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQN 367

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+ RCG + DAR +FD+M  ++++S   +I G+  SG   EA  ++ ++ +   + 
Sbjct: 368 ALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEP 427

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              T+ +++ A +    +  G+++H   ++ G   +  V   L++MYS CGS++DA+ VF
Sbjct: 428 NRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVF 487

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           D M ++  V +N +I GYA H   +EAL L+  +++ G+K D  T+  ++  C    SLE
Sbjct: 488 DRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLE 547

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
            A++ H  + + GF  D    +ALV  Y+K G   DA  VF+KM  +NVISWNA+I G  
Sbjct: 548 WAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSA 607

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            HGRG++A++LFE+M + G++P+ VTF+++LSACS +GL E G   F SMS+D  I P  
Sbjct: 608 QHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTI 667

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HY CM++LLGR G LDEA ALI+  PF+    +W ALL ACR++GN+ + + AAE    
Sbjct: 668 EHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLK 727

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           ++ +    YV L ++Y ++G    AA++ + + ++G+   P  SWI+V  + H F++ D+
Sbjct: 728 LDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFVAEDR 787

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINT 648
           SH Q+++IY ++DR+   +   GYVP+ ++++ DVDE E +  + +HSE+LA+A+GLI+T
Sbjct: 788 SHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLIST 847

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              T + I ++ R+C DCH A K I+ +  REI+ RD +RFHHFKDG+CSCGDYW
Sbjct: 848 PPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 137/450 (30%), Positives = 248/450 (55%), Gaps = 10/450 (2%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R   A E+F+ +E EG       TY ++++A     +++  K V S +L+ G E D  + 
Sbjct: 207 RSETAFEIFQKMEQEGVVP-NRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVG 265

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
             ++ M+ +CG   D R++F+++  R+L++ N +I G+ + G + EA  ++  +  E   
Sbjct: 266 TALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVM 325

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               T+  ++ A      +  GK++HS   K GF  ++ V  ALI MYS+CGSI+DA+ V
Sbjct: 326 PNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLV 385

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD+M  K  + W  +I G A  G+  EAL +Y EM+ +GV+ +  T++ I+  C+  A+L
Sbjct: 386 FDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAAL 445

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
           E  ++ H  +V  G   D    + LV+ YS  G ++DAR VFD+M+ ++++++NA+I GY
Sbjct: 446 EWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGY 505

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
             H  G+EA++LF+++   G++P+ VT++ +L+AC+ SG  E   EI   + +       
Sbjct: 506 AAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDT 565

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM--WAALL--TACRVNGNLELGKFAA 524
           ++  A ++    + G   +A  +       T +N+  W A++  +A    G   L  F  
Sbjct: 566 SVGNA-LVSTYAKCGSFSDASIVFEKM---TKRNVISWNAIIGGSAQHGRGQDALQLFER 621

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            K+ G++P+ +  +V LL+  + +G L+E 
Sbjct: 622 MKMEGVKPD-IVTFVSLLSACSHAGLLEEG 650



 Score =  216 bits (549), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 140/467 (29%), Positives = 244/467 (52%), Gaps = 29/467 (6%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +AL+L   ++ + G     +T  + +S+C    ++   + +    +  G   D+ + N +
Sbjct: 109 KALKLLRQMQ-QHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCI 167

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L M+ +CG + +AR +FD+M ++++VS  + I G  D G    AF +F  + +E      
Sbjct: 168 LNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNR 227

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T+ +++ A +    +  GK +HS  L  G   +  V  AL+ MY+KCGS +D + VF++
Sbjct: 228 ITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEK 287

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           +  +  + WNT+I G A  GY EEA ++Y +M+  GV  +  T+ +++  C   A+L   
Sbjct: 288 LVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWG 347

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K+ H+ + + GF  DI   +AL+  YS+ G I+DAR VFDKM+ K+VISW A+I G    
Sbjct: 348 KEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKS 407

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G G EA+ ++++M   G+ PN VT+ ++L+ACS     E G  I Q +  +  +   A  
Sbjct: 408 GFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVV-EAGLATDAHV 466

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL---- 527
              ++ +    G + +A            + ++  ++    V  N  +G +AA  L    
Sbjct: 467 GNTLVNMYSMCGSVKDA------------RQVFDRMIQRDIVAYNAMIGGYAAHNLGKEA 514

Query: 528 ---------YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
                     G++P+K++ Y+ +LN   +SG L+ A E I TL RKG
Sbjct: 515 LKLFDRLQEEGLKPDKVT-YINMLNACANSGSLEWARE-IHTLVRKG 559



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 143/551 (25%), Positives = 269/551 (48%), Gaps = 65/551 (11%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           A+++ + L+ +G   V SS Y  ++  CI ++ +   ++V  +++     PD Y  N ++
Sbjct: 7   AVDVVQYLQQQGA-QVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALI 65

Query: 173 LMHVRCGMMIDARRLFDEMP--ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
            M+++CG + +AR+++ ++   ER + S N ++ G I  G Y+E  L  L   ++     
Sbjct: 66  NMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYG-YIEKALKLLRQMQQHGLAP 124

Query: 231 SRT----FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            RT    F +  ++   LE    G+++H  A++ G   +V V+  +++MY+KCGSIE+A+
Sbjct: 125 DRTTIMSFLSSCKSPGALEW---GREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAR 181

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VFD+M +K+ V W   I GYA  G SE A +++ +M   GV  +  T+  ++   +  A
Sbjct: 182 EVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPA 241

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           +L+  K  H+ ++  G   D    +ALV  Y+K G  +D R VF+K++ +++I+WN +I 
Sbjct: 242 ALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIG 301

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR----- 461
           G    G  EEA E++ QM   G+ PN +T++ +L+AC  S     G EI   +++     
Sbjct: 302 GLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTS 361

Query: 462 -------------------------DHKIKPRAMHYACMIELLGREGLLDEAFAL---IR 493
                                    D  ++   + +  MI  L + G   EA  +   ++
Sbjct: 362 DIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQ 421

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY--GMEPEK-LSNYVVLLNIYNSSGK 550
            A  +  +  + ++L AC     LE G+   +++   G+  +  + N   L+N+Y+  G 
Sbjct: 422 QAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGN--TLVNMYSMCGS 479

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
           +K+A +V   + ++ +    A             + G  +H   KE  +  DR+  E   
Sbjct: 480 VKDARQVFDRMIQRDIVAYNA------------MIGGYAAHNLGKEALKLFDRLQEE--- 524

Query: 611 HGYVPEEKTLL 621
            G  P++ T +
Sbjct: 525 -GLKPDKVTYI 534


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/573 (39%), Positives = 362/573 (63%), Gaps = 1/573 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T  + + AC  +      +++ S ++      DL+    ++ M+ +C MM DARR +D M
Sbjct: 286 TLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSM 345

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P++++++ N +I+G    GD+L+A  LF  ++ E  D    T +T++++ A L+ I V K
Sbjct: 346 PKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCK 405

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           Q+H+ ++K G   + +V  +L+D Y KC  I++A  +F+E + +  V + ++I  Y+ +G
Sbjct: 406 QIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYG 465

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             EEAL LY +M+D+ +K D F  S ++  C  L++ E  KQ H   ++ GF  DI A++
Sbjct: 466 DGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASN 525

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           +LV+ Y+K G IEDA   F ++  + ++SW+A+I GY  HG G+EA+ LF QML +G+ P
Sbjct: 526 SLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPP 585

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           NH+T ++VL AC+ +GL   G + F+ M     IKP   HYACMI+LLGR G L+EA  L
Sbjct: 586 NHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVEL 645

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           +   PF+    +W ALL A R++ N+ELG+ AA+ L+ +EPEK   +V+L NIY S+G  
Sbjct: 646 VNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMW 705

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
           +  A+V + ++   ++  P  SWIE+K + + F+ GD+SH ++ EIY K+D++   +SK 
Sbjct: 706 ENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSDEIYAKLDQLGDLLSKA 765

Query: 612 GYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           GY    +  + +VD+ E +++L +HSEKLAVAFGLI T    P+++ ++ RIC DCH   
Sbjct: 766 GYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGGPIRVKKNLRICVDCHTFF 825

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           K +  +  REI+VRD +RFHHFKDG CSCGDYW
Sbjct: 826 KFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 170/597 (28%), Positives = 273/597 (45%), Gaps = 69/597 (11%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S +   V N    EAL +F  +   G       T+ +++ AC   R +   ++V    + 
Sbjct: 52  SLLSGYVQNGFVEEALLVFNEMCLLG-VKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVV 110

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           TGFE D ++ N +++M+ +CG++ D+RRLF  + ERN+VS N + +  + S    EA  L
Sbjct: 111 TGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGL 170

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F ++          + + ++ A AGL+   +G+++H   LKMG   + F + AL+DMYSK
Sbjct: 171 FKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSK 230

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            G IE A  VF +++    V WN IIAG  LH  ++ AL L  EM+ SG + + FT S  
Sbjct: 231 AGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSA 290

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           ++ C  +   E  +Q H+ L++     D+ A   LVD YSK   ++DAR  +D M  K++
Sbjct: 291 LKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDI 350

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS-------------- 444
           I+WNALI+GY   G   +AV LF +M    +  N  T   VL + +              
Sbjct: 351 IAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTI 410

Query: 445 --RSGLSERGWEI---FQSMSRDHKIKPRA-----------MHYACMIELLGREGLLDEA 488
             +SG+    + I     +  + + I   +           + Y  MI    + G  +EA
Sbjct: 411 SIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEA 470

Query: 489 FAL---IRGAPFKTTKNMWAALLTACRVNGNLELGK---FAAEKLYGMEPEKLSNYVVLL 542
             L   ++ A  K    + ++LL AC      E GK     A K   M     SN   L+
Sbjct: 471 LKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASN--SLV 528

Query: 543 NIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVD 602
           N+Y   G +++A      +  +G+      SW          + G   H   KE  R  +
Sbjct: 529 NMYAKCGSIEDADRAFSEIPNRGI-----VSW-------SAMIGGYAQHGHGKEALRLFN 576

Query: 603 RMMLEISKHGYVPEEKTLLPD---------VDEQEQRVLSYHSEKLAVAFGLINTSD 650
           +M+    + G  P   TL+           V+E +Q     + EK+ V FG+  T +
Sbjct: 577 QML----RDGVPPNHITLVSVLCACNHAGLVNEGKQ-----YFEKMEVMFGIKPTQE 624



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 173/306 (56%)

Query: 154 SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
           ++++  GF  D  +RN ++ ++ +C     AR+L DE  E ++VS + +++G + +G   
Sbjct: 5   AHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVE 64

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA L+F ++      C   TF ++++A +    +++G+++H  A+  GF  + FV+  L+
Sbjct: 65  EALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLV 124

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
            MY+KCG ++D++ +F  + E+  V WN + + Y       EA+ L+ EM  SG+  + F
Sbjct: 125 VMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEF 184

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           + S+I+  C  L   +  ++ H  +++ G  LD  + +ALVD YSK G IE A  VF  +
Sbjct: 185 SISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDI 244

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
              +V+SWNA+IAG   H   + A+ L ++M  +G RPN  T  + L AC+  G  E G 
Sbjct: 245 AHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGR 304

Query: 454 EIFQSM 459
           ++  S+
Sbjct: 305 QLHSSL 310



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 180/370 (48%), Gaps = 31/370 (8%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +A+ LF  + F    D   +T   ++ +   L++I+  K++ +  + +G   D Y+ N +
Sbjct: 368 DAVSLFSKM-FSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSL 426

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L  + +C  + +A ++F+E    +LV+   +I      GD  EA  L+L + +  +D   
Sbjct: 427 LDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQD--ADIKP 484

Query: 232 RTF--ATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
             F  ++++ A A L     GKQLH  A+K GF  ++F S +L++MY+KCGSIEDA   F
Sbjct: 485 DPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAF 544

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
            E+  +  V W+ +I GYA HG+ +EAL L+ +M   GV  +H T   ++  C       
Sbjct: 545 SEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACN------ 598

Query: 350 HAKQAHAGLVRHG----------FGLDIVAN--SALVDFYSKWGRIEDARHVFDKM-LCK 396
                HAGLV  G          FG+       + ++D   + G++ +A  + + +    
Sbjct: 599 -----HAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEA 653

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           +   W AL+     H +  E  +   +ML +       T + + +  + +G+ E   ++ 
Sbjct: 654 DGFVWGALLGAARIH-KNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVR 712

Query: 457 QSMSRDHKIK 466
           + M +D K+K
Sbjct: 713 KFM-KDSKVK 721



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 165/353 (46%), Gaps = 42/353 (11%)

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           +LH+  +K GF  +  +   L+ +YSKC     A+ + DE SE   V W+++++GY  +G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
           + EEAL ++ EM   GVK + FTF  +++ C+    L   ++ H   V  GF  D    +
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
            LV  Y+K G ++D+R +F  ++ +NV+SWNAL + Y       EAV LF++M+ +G+ P
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMP 181

Query: 432 NHVTFLAVLSAC-----------------------------------SRSGLSERGWEIF 456
           N  +   +L+AC                                   S++G  E    +F
Sbjct: 182 NEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVF 241

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREG--LLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
           Q ++    +   A+   C++         LLDE    ++G+  +      ++ L AC   
Sbjct: 242 QDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDE----MKGSGTRPNMFTLSSALKACAAM 297

Query: 515 GNLELGKFAAEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           G  ELG+     L  M+    L   V L+++Y+    + +A     ++ +K +
Sbjct: 298 GFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDI 350


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 249/636 (39%), Positives = 385/636 (60%), Gaps = 39/636 (6%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I+ L    R REA++L   +E        +S Y  L+  C+  R+++E K+V +++ ++G
Sbjct: 95  IDILCGQSRLREAVQLLYRIE-----KPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG 149

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF- 219
               LY+ NR+L M+ +CG ++DA ++FDEM  R+L S N++I+G +  G++ +A  LF 
Sbjct: 150 -SIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFD 208

Query: 220 --------------------------LDLW-----EEFSDCGSRTFATMIRASAGLELIS 248
                                     L+L+      ++S     T ++ + ASA +  + 
Sbjct: 209 KMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLH 268

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           +GK++H   ++MG   +  V C+L+DMY KCGSIE+A+ +FD+M E+  V W T+I  Y 
Sbjct: 269 MGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYL 328

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
            +G  EE   L+  + +S +  + FTF+ ++  C  LA+ +  KQ HA +VR GF     
Sbjct: 329 KNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSS 388

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
           A SALV  YSK G IE+A+ VF+ +   ++ SW +L+ GY  HG+ ++A+  FE +L +G
Sbjct: 389 AASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSG 448

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
            +P+ + F+ VLSAC+ +GL ++G E F S+   H +     HYAC+I+LL R G   EA
Sbjct: 449 TKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEA 508

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
            ++I   P K  K +WAALL  CR++GNLEL K AA+ L+ +EPE  + YV L NIY S+
Sbjct: 509 ESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASA 568

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           G   E A +  T+  +G+   P  SWIE++++ HVF  GD SH ++KEI   +  +   +
Sbjct: 569 GMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRM 628

Query: 609 SKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
            + GYVP+   +L DV+ EQ++  LSYHSEKLAVAFG+I+T   TP+++ ++ R C DCH
Sbjct: 629 KEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDCH 688

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           NAIK I+ +TGR+I+VRD++RFH F+ G CSC DYW
Sbjct: 689 NAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/410 (26%), Positives = 191/410 (46%), Gaps = 35/410 (8%)

Query: 81  KESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISAC 140
           K  +L D    + +    + I   V + R  EALEL+ +++          T  + ++A 
Sbjct: 202 KARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAAS 261

Query: 141 IGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCN 200
             + S+   K++  +++  G + D  +   +L M+ +CG + +AR +FD+M ER++VS  
Sbjct: 262 AAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWT 321

Query: 201 MIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM 260
            +I   + +G   E F LF  L          TFA ++ A A L    +GKQ+H+  +++
Sbjct: 322 TMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRV 381

Query: 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY 320
           GF      + AL+ MYSKCG IE+A+ VF+ + +     W +++ GYA HG  ++AL  +
Sbjct: 382 GFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFF 441

Query: 321 YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV------------RHGFGLDIV 368
             +  SG K D   F  ++  C           AHAGLV            +HG    I 
Sbjct: 442 ELLLKSGTKPDGIAFIGVLSAC-----------AHAGLVDKGLEYFHSIKEKHGLTRTID 490

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGE----EAVELFEQ 423
             + ++D  ++ G+  +A  + ++M  K +   W AL+ G   HG  E     A  LFE 
Sbjct: 491 HYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFE- 549

Query: 424 MLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
                + P N  T++ + +  + +G+      I ++M     +K   M +
Sbjct: 550 -----IEPENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSW 594


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/682 (36%), Positives = 391/682 (57%), Gaps = 55/682 (8%)

Query: 65  GLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQ------IEKLVLNKRYREALELFE 118
            LKP    +    +   +S+  DT +      +C+       I  L    R +EAL++  
Sbjct: 7   NLKPSHSSSPFQPKTFFKSNTKDTTL---VPHLCNHKRFDEAIHILCQQNRLKEALQILH 63

Query: 119 ILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC 178
            ++        +S Y  LI +CI  R +++ K+V  ++  +GF P L++ NR+L M+ +C
Sbjct: 64  QID-----KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKC 118

Query: 179 GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMI 238
             ++D+++LFDEMPER+L S N++I+G    G   EA  LF    ++  +  + ++  MI
Sbjct: 119 DSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLF----DKMPERDNFSWTAMI 174

Query: 239 -------RASAGLEL-----------------------------ISVGKQLHSCALKMGF 262
                  R +  LEL                             + +GK++H   ++ G 
Sbjct: 175 SGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGL 234

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             +  V  AL DMY KCGSIE+A+ +FD+M ++  V W  +I  Y   G  +E  DL+ +
Sbjct: 235 DSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFAD 294

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           +  SG++ + FTFS ++  C    S E  K+ H  + R GF     A SALV  YSK G 
Sbjct: 295 LLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGN 354

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           +  A  VF +    ++ SW +LIAGY  +G+ +EA+  FE ++ +G +P+H+TF+ VLSA
Sbjct: 355 MVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSA 414

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
           C+ +GL ++G + F S+   + +   A HYAC+I+LL R G  DEA  +I     K  K 
Sbjct: 415 CAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKF 474

Query: 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           +WA+LL  CR++GNL+L + AAE L+ +EPE  + YV L NIY ++G   E A++ +T+ 
Sbjct: 475 LWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMD 534

Query: 563 RKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLP 622
            +G+   P  SWI +K+  HVFL GD SH ++KEI   + ++   + + G+VP+   +L 
Sbjct: 535 DRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLH 594

Query: 623 DV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREI 681
           DV DEQ+++ LSYHSEKLAVAFG+I+T + TP+++ ++ R C DCH AIK I+ +T R+I
Sbjct: 595 DVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKI 654

Query: 682 VVRDASRFHHFKDGMCSCGDYW 703
           +VRD++RFH F+DG CSC DYW
Sbjct: 655 IVRDSNRFHFFEDGHCSCRDYW 676


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/592 (40%), Positives = 369/592 (62%), Gaps = 8/592 (1%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           A+   + +E  G F   + TY  LI  C    +++E KRV  ++   G+EP +++ N +L
Sbjct: 39  AMRAMDAMERHGVF-ADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLL 97

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            M+V+  ++ +A  LFDEMPERN+VS   +I+   +  +  +A    + ++ E       
Sbjct: 98  NMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLND-KALKCLILMFREGVRPNMF 156

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T+++++RA  GL  +   +QLH   +K G   +VFV  ALID+YSK   +++A GVFDEM
Sbjct: 157 TYSSVLRACDGLPNL---RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEM 213

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
             +  V WN+II G+A +    EAL+L+  M+ +G   D  T + ++R CT LA LE  +
Sbjct: 214 PTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGR 273

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           Q H  +++  F  D++ N+AL+D Y K G +EDA   F +M+ K+VISW+ ++AG   +G
Sbjct: 274 QVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVAGLAQNG 331

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
              +A+ELFE M  +G RPN++T L VL ACS +GL E+GW  F+SM +   + P   HY
Sbjct: 332 YSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHY 391

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532
            C+I+LLGR G LDEA  LI     +     W  LL ACRV+ N++L  +AA+K+  +EP
Sbjct: 392 GCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKKIIELEP 451

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHV 592
           E    Y++L NIY ++ + ++ AEV +T+  +G+R  P CSWIEV KQ HVF+ GD SH 
Sbjct: 452 EDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFILGDTSHP 511

Query: 593 QTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDW 651
           + +EI ++++ ++  +   GYVP+   +L D++ EQ++  L YHSEKLA+ FGL+N S  
Sbjct: 512 KIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGLMNLSRE 571

Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             ++I ++ RIC DCH   K+++ +  R IV+RD  R+HHF+DG+CSCGDYW
Sbjct: 572 KTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 36/131 (27%)

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALV--------------------------------- 374
           L  A +A   + RHG   D +  S L+                                 
Sbjct: 36  LHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNT 95

Query: 375 --DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
             + Y K+  +E+A  +FD+M  +NV+SW  +I+ Y N    ++A++    M   G+RPN
Sbjct: 96  LLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNK-LNDKALKCLILMFREGVRPN 154

Query: 433 HVTFLAVLSAC 443
             T+ +VL AC
Sbjct: 155 MFTYSSVLRAC 165


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/596 (37%), Positives = 366/596 (61%), Gaps = 3/596 (0%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R  EA   F  +  E G +    T+ +++ AC    +++  +++  +++  G+  D  +R
Sbjct: 393 RIDEAFLFFNKM-IESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR 451

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
             +L M+ +CG + DA R+F+++ ++N+V+ N +I   +    Y  A   F  L +E   
Sbjct: 452 TALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
             S TF +++      + + +GK +H   +K G   ++ VS AL+ M+  CG +  A+ +
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNL 571

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F++M ++  V WNTIIAG+  HG ++ A D +  M++SG+K D  TF+ ++  C    +L
Sbjct: 572 FNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEAL 631

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
              ++ HA +    F  D++  + L+  Y+K G IEDA  VF K+  KNV SW ++IAGY
Sbjct: 632 TEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGY 691

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
             HGRG+EA+ELF QM   G++P+ +TF+  LSAC+ +GL E G   FQSM ++  I+PR
Sbjct: 692 AQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPR 750

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
             HY CM++L GR GLL+EA   I     +    +W ALL AC+V+ N+EL + AA+K  
Sbjct: 751 MEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKL 810

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
            ++P     +V+L NIY ++G  KE A++ + +  +G+   P  SWIEV  + H F S D
Sbjct: 811 ELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDD 870

Query: 589 QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLIN 647
           ++H QT+EI+ +++R+ +E+ + GYVP+ + +L DV D ++++ L YHSE+LA+ +GL+ 
Sbjct: 871 KTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLK 930

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T   TP+ I ++ R+C DCH A K I+ +T R+I+ RD++RFHHFKDG+CSCGD+W
Sbjct: 931 TPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  261 bits (667), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 150/479 (31%), Positives = 262/479 (54%), Gaps = 19/479 (3%)

Query: 99  SQIEKLVLNK-----RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVF 153
           +Q    VLN+     ++ EA+++ E ++      +   TY AL+  CI  +++ + +R++
Sbjct: 75  TQKANAVLNRLSKAGQFNEAMQVLERVD-SSHIQIYRQTYSALLQLCIKFKNLGDGERIY 133

Query: 154 SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
           +++  +G +PD++MRN ++ M+ +CG  I A+++FD+M E+++ S N+++ G +  G Y 
Sbjct: 134 NHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE 193

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EAF L   + ++      RTF +M+ A A    +  G++L++  LK G+  ++FV  ALI
Sbjct: 194 EAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALI 253

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           +M+ KCG I DA  VFD +  +  V W ++I G A HG  ++A +L+  M + GV+ D  
Sbjct: 254 NMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKV 313

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
            F  ++R C    +LE  K+ HA +   G+  +I   +A++  Y+K G +EDA  VFD +
Sbjct: 314 AFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLV 373

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             +NV+SW A+IAG+  HGR +EA   F +M+ +G+ PN VTF+++L ACS     +RG 
Sbjct: 374 KGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQ 433

Query: 454 EIFQSMSRDHKIKPRAMH----YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509
           +I     +DH I+            ++ +  + G L +A  +      K     W A++T
Sbjct: 434 QI-----QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMIT 487

Query: 510 ACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           A   +   +  L  F A    G++P   S +  +LN+  SS  L+    V   + + GL
Sbjct: 488 AYVQHEQYDNALATFQALLKEGIKPNS-STFTSILNVCKSSDSLELGKWVHFLIMKAGL 545



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 140/307 (45%), Gaps = 36/307 (11%)

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
           K T   N ++   +  G   EA+ +   +  S +++   T+S ++++C +  +L   ++ 
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414
           +  + + G   DI   + L++ Y+K G    A+ +FD M  K+V SWN L+ GY  HG  
Sbjct: 133 YNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR------------- 461
           EEA +L EQM+ + ++P+  TF+++L+AC+ +   ++G E++  + +             
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 462 -----------------DHKIKPRAMHYACMIELLGREGLLDEA---FALIRGAPFKTTK 501
                            D+      + +  MI  L R G   +A   F  +     +  K
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 502 NMWAALLTACRVNGNLELGK--FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
             + +LL AC     LE GK   A  K  G + E       +L++Y   G +++A EV  
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVG-TAILSMYTKCGSMEDALEVFD 371

Query: 560 TLRRKGL 566
            ++ + +
Sbjct: 372 LVKGRNV 378


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/577 (41%), Positives = 366/577 (63%), Gaps = 8/577 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY  ++ AC  L  +   +RV S ++  G E D+Y+ N +L M+ + G M  AR +FD M
Sbjct: 163 TYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRM 222

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE---FSDCGSRTFATMIRASAGLELIS 248
            ER+L S N +I+G   + D   AFL+F DL  +   F+DC   T   ++ A A L+ + 
Sbjct: 223 AERDLTSWNTMISGYAKNADSGTAFLVF-DLMGKAGLFADC--TTLLGLLSACADLKAVK 279

Query: 249 VGKQLHSCALKMGFGD-NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
            GK +H  A++   G+ N F + +LI+MY  C  + DA+ +F+ +  K TV WN++I GY
Sbjct: 280 EGKVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGY 339

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           A +G + E+L L+  M   G   D  TF  ++  C ++A+L +    H+ LV+ GF  + 
Sbjct: 340 ARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANT 399

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
           +  +ALVD YSK G +  +R VFD+M  K+++SW+A++AGYG HGRG EA+ + + M  N
Sbjct: 400 IVGTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKAN 459

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
            + P++  F ++LSACS +GL   G EIF  M +++ +KP   HY+CM++LLGR G LDE
Sbjct: 460 SVIPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDE 519

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A+ +IR    K T ++WAALLTA R++ N++L + +A+K++ M P+ +S+Y+ L NIY +
Sbjct: 520 AYVIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAA 579

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
             +  +   V   +RRKGL+  P CS+IE+    H FL GD+SH QT++IY K++ +  +
Sbjct: 580 EKRWDDVERVRAMVRRKGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQ 639

Query: 608 ISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
           + + GY P+   +  DV+E+ ++++L  HSE+LA+AF LINT   T ++I ++ R+C DC
Sbjct: 640 LKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERLAIAFALINTGPGTVIRITKNLRVCGDC 699

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           H   KLI+ +TGREI++RD  RFHHF  G CSCGDYW
Sbjct: 700 HTVTKLISELTGREIIMRDIHRFHHFIKGFCSCGDYW 736



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 231/468 (49%), Gaps = 39/468 (8%)

Query: 135 ALISACIGLRSIREVKRVFSYMLS-TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193
           AL+ +    +S ++ +++ ++M+S +  E + Y+  ++   +  CG+M  A  +FD +  
Sbjct: 64  ALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVL 123

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL 253
           +N    N +I G   +G  +++ +L+ ++        + T+  +++A   L L+ +G+++
Sbjct: 124 KNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRV 183

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           HS  +  G   +++V  +L+ MY+K G +  A+ VFD M+E+    WNT+I+GYA +  S
Sbjct: 184 HSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADS 243

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG-LDIVANSA 372
             A  ++  M  +G+  D  T   ++  C  L +++  K  H   VR+  G  +    ++
Sbjct: 244 GTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNS 303

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L++ Y     + DAR +F+++  K+ +SWN++I GY  +G   E++ LF +M L+G  P+
Sbjct: 304 LIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPD 363

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSR------------------------------D 462
            VTF+AVL AC +      G  I   + +                              D
Sbjct: 364 QVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFD 423

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTT---KNMWAALLTACRVNGNLEL 519
                  + ++ M+   G  G   EA +++ G    +      ++ ++L+AC   G +  
Sbjct: 424 EMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVE 483

Query: 520 GK---FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           GK   +  EK Y ++P  LS+Y  ++++   +G L EA  +IRT+  K
Sbjct: 484 GKEIFYKMEKEYNVKP-ALSHYSCMVDLLGRAGHLDEAYVIIRTMEIK 530



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 160/325 (49%), Gaps = 15/325 (4%)

Query: 250 GKQLHSCALKMG-FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           G+QLH+  +      +N +++  L   Y+ CG +  A+ +FD +  K +  WN +I GYA
Sbjct: 78  GQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYA 137

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
            +G   ++L LY EM   G + D+FT+  +++ C  L  +E  ++ H+ +V  G   DI 
Sbjct: 138 SNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIY 197

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             ++L+  Y+K+G +  AR VFD+M  +++ SWN +I+GY  +     A  +F+ M   G
Sbjct: 198 VGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAG 257

Query: 429 MRPNHVTFLAVLSACS-----RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           +  +  T L +LSAC+     + G    G+ +  S+   +K    +     +IE+     
Sbjct: 258 LFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNS-----LIEMYCNCN 312

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL--ELGKFAAEKLYGMEPEKLSNYVVL 541
            + +A  L     +K T + W +++     NG+    L  F    L G  P++++ ++ +
Sbjct: 313 CMVDARRLFERVRWKDTVS-WNSMILGYARNGDAFESLRLFRRMALDGSGPDQVT-FIAV 370

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGL 566
           L   +    L+    +   L +KG 
Sbjct: 371 LGACDQIAALRYGMSIHSYLVKKGF 395


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/503 (45%), Positives = 325/503 (64%), Gaps = 32/503 (6%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T +T+++A A +  +  GKQ H+  +KMGF  +V V  AL+ MY++CGS+EDA  VFD+M
Sbjct: 12  TLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKM 71

Query: 293 SEKTT-------------------------------VGWNTIIAGYALHGYSEEALDLYY 321
           SE++T                               V W  +IAGYA +GY +E+L+++ 
Sbjct: 72  SERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFN 131

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
           +MR +G+K D F    ++  C  LA+LE  +Q HA +V+ GF LDIV  SALVD Y+K G
Sbjct: 132 QMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSG 191

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            +EDA  VFDKM  +N +SWN++I G   HGRG +AV LFEQML  G++PN ++F+ VLS
Sbjct: 192 SMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLS 251

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           ACS +GL   G   F  M++++ I P   HY CMI+LLGR G LDEA   I G P +   
Sbjct: 252 ACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDV 311

Query: 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           ++W ALL ACR++GN EL K  AE L GME +    YV+L NIY ++G+  +AA+V + +
Sbjct: 312 SVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLM 371

Query: 562 RRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLL 621
           + +G+   P  SWIEVK   H F++G+ SH Q KEI+  ++ +  ++   GYVP +  +L
Sbjct: 372 KDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKAAGYVPNKNFVL 431

Query: 622 PDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGRE 680
            DV++ E+ + LS+HSEKLA+AFG+INT+  T +++ ++ R+C DCH  IK I++   R+
Sbjct: 432 QDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHTVIKFISLNFTRK 491

Query: 681 IVVRDASRFHHFKDGMCSCGDYW 703
           IVVRDA+RFHHFKDG CSCGDYW
Sbjct: 492 IVVRDANRFHHFKDGRCSCGDYW 514



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 167/328 (50%), Gaps = 35/328 (10%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T   ++ AC  + S+ + K+  +Y++  GFE D+ ++  ++ M+ RCG + DA  +FD+M
Sbjct: 12  TLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKM 71

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLF---------------------------LDLWE 224
            ER+  + N +I G   + D  +A  LF                           L+++ 
Sbjct: 72  SERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFN 131

Query: 225 EFSDCGSRT----FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           +    G ++      +++ A A L  + +G+Q H+  ++ GF  ++ V  AL+DMY+K G
Sbjct: 132 QMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSG 191

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           S+EDA  VFD+M ++  V WN+II G A HG   +A+ L+ +M  +G+K +  +F  ++ 
Sbjct: 192 SMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLS 251

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
            C+    L +  + +  L+   +G+  D+   + ++D   + G +++A +  + M  +  
Sbjct: 252 ACSH-TGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPD 310

Query: 399 IS-WNALIAGYGNHGRGEEAVELFEQML 425
           +S W AL+     HG  E A  + E +L
Sbjct: 311 VSVWGALLGACRIHGNTELAKRIAEHLL 338



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 130/265 (49%), Gaps = 36/265 (13%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M   GVK + FT S +++ C  +ASLE  KQAH  +++ GF  D+V  +ALV  Y++ G 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 383 IEDARHVFDK-------------------------------MLCKNVISWNALIAGYGNH 411
           +EDA HVFDK                               M  ++V+SW A+IAGY  +
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G G+E++ +F QM   GM+ +     +VLSAC+     E G + F +           + 
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQ-FHAYVVQSGFALDIVV 179

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY--G 529
            + ++++  + G +++A  +    P +   + W +++T C  +G         E++   G
Sbjct: 180 GSALVDMYAKSGSMEDACQVFDKMPQRNEVS-WNSIITGCAQHGRGNDAVLLFEQMLQAG 238

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEA 554
           ++P ++S +V +L+  + +G + E 
Sbjct: 239 IKPNEIS-FVGVLSACSHTGLVNEG 262


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 228/572 (39%), Positives = 359/572 (62%), Gaps = 4/572 (0%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
            L+  C  L  + E K + + +L++ F  DL M+N +L ++ +CG ++ AR+LFDEM  R
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV--GKQ 252
           ++V+   +I G        +A LL  ++          T A++++A++G+    V  G+Q
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQ 139

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LH   L+ G+  NV+VSCA++DMY++C  +E+AQ +FD M  K  V WN +IAGYA  G 
Sbjct: 140 LHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQ 199

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            ++A  L+  M    VK  HFT+S ++  C  + SLE  K  HA +++ G  L     + 
Sbjct: 200 GDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNT 259

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D Y+K G IEDA+ VFD++  ++V+SWN+++ GY  HG G+ A++ FE+ML   + PN
Sbjct: 260 LLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPN 319

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            +TFL VL+ACS +GL + G   F  M + + ++P+  HY  M++LLGR G LD A   I
Sbjct: 320 DITFLCVLTACSHAGLLDEGRHYFDMMKK-YNVEPQISHYVTMVDLLGRAGHLDRAIQFI 378

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
              P K T  +W ALL ACR++ N+ELG +AAE ++ ++      +V+L NIY  +G+  
Sbjct: 379 SEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRWN 438

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
           +AA+V + ++  G++  PACSW+E++ + HVF++ D +H Q +EI+   +++  +I + G
Sbjct: 439 DAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEIG 498

Query: 613 YVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           YVP+   +L  +D+QE+   L YHSEKLA+AF L+NT   + ++I ++ RIC DCH+A K
Sbjct: 499 YVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSAFK 558

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++ +  REI+VRD +RFHHF DG CSC DYW
Sbjct: 559 FVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/373 (28%), Positives = 189/373 (50%), Gaps = 45/373 (12%)

Query: 227 SDCGSRTFA-TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
           ++ G+R    T+++    L  ++ GK +H+  L   F D++ +   L+++Y+KCG +  A
Sbjct: 10  NNAGAREICHTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYA 69

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
           + +FDEMS +  V W  +I GY+ H   ++AL L  EM   G+K + FT + +++  + +
Sbjct: 70  RKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGV 129

Query: 346 ASLE--HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            S +    +Q H   +R+G+  ++  + A++D Y++   +E+A+ +FD M+ KN +SWNA
Sbjct: 130 GSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNA 189

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG-W--------- 453
           LIAGY   G+G++A  LF  ML   ++P H T+ +VL AC+  G  E+G W         
Sbjct: 190 LIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWG 249

Query: 454 -------------------------EIFQSMSRDHKIKPRAMHYACMIELLGREGLLD-E 487
                                    ++F  +++   +   +M        LG+  L   E
Sbjct: 250 EKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFE 309

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGK--FAAEKLYGMEPEKLSNYVVLLNIY 545
                R AP   T   +  +LTAC   G L+ G+  F   K Y +EP+ +S+YV ++++ 
Sbjct: 310 EMLRTRIAPNDIT---FLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQ-ISHYVTMVDLL 365

Query: 546 NSSGKLKEAAEVI 558
             +G L  A + I
Sbjct: 366 GRAGHLDRAIQFI 378



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 89/200 (44%), Gaps = 10/200 (5%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY +++ AC  + S+ + K V + M+  G +   ++ N +L M+ + G + DA+++FD +
Sbjct: 221 TYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRL 280

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            +R++VS N ++ G    G    A   F ++          TF  ++ A +   L+  G+
Sbjct: 281 AKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGR 340

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALH 310
                  K      +     ++D+  + G ++ A     EM  K T   W  ++    +H
Sbjct: 341 HYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMH 400

Query: 311 ------GYSEEA---LDLYY 321
                 GY+ E    LD +Y
Sbjct: 401 KNMELGGYAAECIFELDSHY 420


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 223/596 (37%), Positives = 365/596 (61%), Gaps = 3/596 (0%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R  EA   F  +  E G +    T+ +++ AC    +++  +++  +++  G+  D  +R
Sbjct: 393 RIDEAFLFFNKM-IESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVR 451

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
             +L M+ +CG + DA R+F+++ ++N+V+ N +I   +    Y  A   F  L +E   
Sbjct: 452 TALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIK 511

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
             S TF +++      + + +GK +H   +K G   ++ VS AL+ M+  CG +  A+ +
Sbjct: 512 PNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNL 571

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F++M ++  V WNTIIAG+  HG ++ A D +  M++SG+K D  TF+ ++  C    +L
Sbjct: 572 FNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEAL 631

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
              ++ HA +    F  D++  + L+  Y+K G IEDA  VF K+  KNV SW ++I GY
Sbjct: 632 TEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGY 691

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
             HGRG+EA+ELF QM   G++P+ +TF+  LSAC+ +GL E G   FQSM ++  I+PR
Sbjct: 692 AQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPR 750

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
             HY CM++L GR GLL+EA   I     +    +W ALL AC+V+ N+EL + AA+K  
Sbjct: 751 MEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKL 810

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
            ++P     +V+L NIY ++G  KE A++ + +  +G+   P  SWIEV  + H F S D
Sbjct: 811 ELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVHTFYSDD 870

Query: 589 QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLIN 647
           ++H QT+EI+ +++R+ +E+ + GYVP+ + +L DV D ++++ L YHSE+LA+ +GL+ 
Sbjct: 871 KTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAITYGLLK 930

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T   TP+ I ++ R+C DCH A K I+ +T R+I+ RD++RFHHFKDG+CSCGD+W
Sbjct: 931 TPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGDFW 986



 Score =  258 bits (659), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 149/479 (31%), Positives = 261/479 (54%), Gaps = 19/479 (3%)

Query: 99  SQIEKLVLNK-----RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVF 153
           +Q    VLN+     ++ EA+++ E ++      +   TY AL+  CI  +++ + +R++
Sbjct: 75  TQKANAVLNRLSKAGQFNEAMQVLERVD-SSHIQIYRQTYSALLQLCIKFKNLGDGERIY 133

Query: 154 SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
           +++  +G +PD++M N ++ M+ +CG  I A+++FD+M E+++ S N+++ G +  G Y 
Sbjct: 134 NHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYE 193

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EAF L   + ++      RTF +M+ A A    +  G++L++  LK G+  ++FV  ALI
Sbjct: 194 EAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALI 253

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           +M+ KCG I DA  VFD +  +  V W ++I G A HG  ++A +L+  M + GV+ D  
Sbjct: 254 NMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKV 313

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
            F  ++R C    +LE  K+ HA +   G+  +I   +A++  Y+K G +EDA  VFD +
Sbjct: 314 AFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLV 373

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             +NV+SW A+IAG+  HGR +EA   F +M+ +G+ PN VTF+++L ACS     +RG 
Sbjct: 374 KGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQ 433

Query: 454 EIFQSMSRDHKIKPRAMH----YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509
           +I     +DH I+            ++ +  + G L +A  +      K     W A++T
Sbjct: 434 QI-----QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMIT 487

Query: 510 ACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           A   +   +  L  F A    G++P   S +  +LN+  SS  L+    V   + + GL
Sbjct: 488 AYVQHEQYDNALATFQALLKEGIKPNS-STFTSILNVCKSSDSLELGKWVHFLIMKAGL 545



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 140/307 (45%), Gaps = 36/307 (11%)

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
           K T   N ++   +  G   EA+ +   +  S +++   T+S ++++C +  +L   ++ 
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414
           +  + + G   DI   + L++ Y+K G    A+ +FD M  K+V SWN L+ GY  HG  
Sbjct: 133 YNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR------------- 461
           EEA +L EQM+ + ++P+  TF+++L+AC+ +   ++G E++  + +             
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 462 -----------------DHKIKPRAMHYACMIELLGREGLLDEA---FALIRGAPFKTTK 501
                            D+      + +  MI  L R G   +A   F  +     +  K
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 502 NMWAALLTACRVNGNLELGK--FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
             + +LL AC     LE GK   A  K  G + E       +L++Y   G +++A EV  
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVG-TAILSMYTKCGSMEDALEVFD 371

Query: 560 TLRRKGL 566
            ++ + +
Sbjct: 372 LVKGRNV 378


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/578 (41%), Positives = 363/578 (62%), Gaps = 2/578 (0%)

Query: 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186
           +  S  Y   +  CI        K +   +L  G   DL+  N +L M+V+   + DA +
Sbjct: 35  EFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASK 94

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           LFDEMPERN +S   +I G  +S  +LEA  LF+ L  E       TFA++++A A +E 
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREVLP-NQFTFASVLQACATMEG 153

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           +++G Q+H   +K+G   +VFVS AL+D+Y+KCG +E++  +F E   +  V WNT+I G
Sbjct: 154 LNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVG 213

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           +   G  E+AL L+  M +  V+    T+S  +R C  LA+LE   Q H+  V+  F  D
Sbjct: 214 HVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKD 273

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           IV  +AL+D Y+K G I+DAR VFD M  ++ +SWNA+I+GY  HG G EA+ +F++M  
Sbjct: 274 IVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQE 333

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
             ++P+ +TF+ VLSAC+ +GL ++G   F SM +DH I+P   HY CM+ LLGR G LD
Sbjct: 334 TEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLD 393

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546
           +A  LI   PF+ +  +W ALL AC ++ ++ELG+ +A+++  MEP+  + +V+L N+Y 
Sbjct: 394 KAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYA 453

Query: 547 SSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMML 606
           ++ +    A V + ++RKG++  P  SWIE +   H F  GD SH + + I   ++ + +
Sbjct: 454 TAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHM 513

Query: 607 EISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCD 665
           +  K GY+P    +L DV DE+++R+L  HSE+LA++FG+I T   +P++I+++ RIC D
Sbjct: 514 KTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVD 573

Query: 666 CHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           CH AIK I+ V  REIVVRD +RFHHF++G+CSCGDYW
Sbjct: 574 CHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/596 (38%), Positives = 366/596 (61%), Gaps = 3/596 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           Y E++ LF  +  + G      T+  ++ A +GL      +++ +  ++TGF  D  + N
Sbjct: 231 YTESIHLFLKMR-QSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGN 289

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
           ++L  + +   +++ R LFDEMPE + VS N++I+    +  Y  +   F ++     D 
Sbjct: 290 QILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDR 349

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
            +  FATM+  +A L  + +G+QLH  AL       + V  +L+DMY+KC   E+A+ +F
Sbjct: 350 RNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIF 409

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
             + ++TTV W  +I+GY   G     L L+ +MR S ++ D  TF+ +++     ASL 
Sbjct: 410 KSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLL 469

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             KQ HA ++R G   ++ + S LVD Y+K G I+DA  VF++M  +N +SWNALI+ + 
Sbjct: 470 LGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHA 529

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
           ++G GE A+  F +M+ +G++P+ V+ L VL+ACS  G  E+G E FQ+MS  + I P+ 
Sbjct: 530 DNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKK 589

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HYACM++LLGR G   EA  L+   PF+  + MW+++L ACR++ N  L + AAEKL+ 
Sbjct: 590 KHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFS 649

Query: 530 MEP-EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
           ME     + YV + NIY ++G+ ++  +V + +R +G++ +PA SW+EV  + HVF S D
Sbjct: 650 MEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSND 709

Query: 589 QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLIN 647
           Q+H    EI RK++ +  EI + GY P+  +++ DVDEQ +   L YHSE+LAVAF LI+
Sbjct: 710 QTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALIS 769

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T +  P+ ++++ R C DCH AIKLI+ +  REI VRD SRFHHF +G+CSCGDYW
Sbjct: 770 TPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/445 (26%), Positives = 215/445 (48%), Gaps = 17/445 (3%)

Query: 107 NKRYREALELFEILEFEGGFDVGSS-TYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           N  + EA +LF  +       +    T+  L+  C        V +V ++ +  GF+ + 
Sbjct: 123 NSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNP 182

Query: 166 YMRNRVLLMHVRCGMMIDARRL------FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           ++    +L+   C    + RRL      F+E+PE++ V+ N +I G    G Y E+  LF
Sbjct: 183 FLTVSNVLLKSYC----EVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLF 238

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
           L + +        TF+ +++A  GL   ++G+QLH+ ++  GF  +  V   ++D YSK 
Sbjct: 239 LKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKH 298

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
             + + + +FDEM E   V +N +I+ Y+     E +L  + EM+  G    +F F+ ++
Sbjct: 299 DRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATML 358

Query: 340 RICTRLASLEHAKQAH-AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
            I   L+SL+  +Q H   L+     +  V NS LVD Y+K    E+A  +F  +  +  
Sbjct: 359 SIAANLSSLQMGRQLHCQALLATADSILHVGNS-LVDMYAKCEMFEEAELIFKSLPQRTT 417

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SW ALI+GY   G     ++LF +M  + +R +  TF  VL A +       G ++   
Sbjct: 418 VSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAF 477

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           + R   ++      + ++++  + G + +A  +    P +   + W AL++A   NG+ E
Sbjct: 478 IIRSGNLE-NVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVS-WNALISAHADNGDGE 535

Query: 519 --LGKFAAEKLYGMEPEKLSNYVVL 541
             +G FA     G++P+ +S   VL
Sbjct: 536 AAIGAFAKMIESGLQPDSVSILGVL 560



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 128/499 (25%), Positives = 220/499 (44%), Gaps = 80/499 (16%)

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
           + +RV + ++ TGF+ D    N ++   +R G +  AR+++DEMP +N VS N +I+G +
Sbjct: 31  DTRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHV 90

Query: 208 DSGD-------------------------------YLEAFLLFLDLWEEFSDC---GSRT 233
            +GD                               + EAF LF  +    S C      T
Sbjct: 91  KTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRS-SSCTLPDHVT 149

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVF--VSCALIDMYSKCGSIEDAQGVFDE 291
           F T++         +   Q+H+ A+K+GF  N F  VS  L+  Y +   ++ A  +F+E
Sbjct: 150 FTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEE 209

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           + EK +V +NT+I GY   G   E++ L+ +MR SG +   FTFS +++    L      
Sbjct: 210 IPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALG 269

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           +Q HA  V  GF  D    + ++DFYSK  R+ + R +FD+M   + +S+N +I+ Y   
Sbjct: 270 QQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQA 329

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLS-ACSRSGLS--------------------- 449
            + E ++  F +M   G    +  F  +LS A + S L                      
Sbjct: 330 DQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVG 389

Query: 450 -------------ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
                        E    IF+S+ +   +   A+    + + L   GL  + F  +RG+ 
Sbjct: 390 NSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGL--KLFTKMRGSN 447

Query: 497 FKTTKNMWAALLTACRVNGNLELGK-FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
            +  ++ +A +L A     +L LGK   A  +     E + +   L+++Y   G +K+A 
Sbjct: 448 LRADQSTFATVLKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAV 507

Query: 556 EVIRTLRRKGLRMLPACSW 574
           +V   +  +      A SW
Sbjct: 508 QVFEEMPDRN-----AVSW 521



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 116/249 (46%), Gaps = 38/249 (15%)

Query: 231 SRTFATM--IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
           SRT AT+  +R  +    +   +++ +  +K GF  +   S  +++   + G +  A+ V
Sbjct: 12  SRTLATLRQLRQPSPATFLDT-RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKV 70

Query: 289 FDEMSEKTTVGWNTIIAG-------------------------------YALHGYSEEAL 317
           +DEM  K TV  NT+I+G                               YA + + +EA 
Sbjct: 71  YDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAF 130

Query: 318 DLYYEM-RDSGVKM-DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD--IVANSAL 373
            L+ +M R S   + DH TF+ ++  C          Q HA  V+ GF  +  +  ++ L
Sbjct: 131 KLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVL 190

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           +  Y +  R++ A  +F+++  K+ +++N LI GY   G   E++ LF +M  +G +P+ 
Sbjct: 191 LKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSD 250

Query: 434 VTFLAVLSA 442
            TF  VL A
Sbjct: 251 FTFSGVLKA 259



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 107/232 (46%), Gaps = 25/232 (10%)

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           A+    ++  A +++ GF  D   ++ +V+   + G++  AR V+D+M  KN +S N +I
Sbjct: 27  ATFLDTRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMI 86

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           +G+   G    A +LF+ M      P+   VT+  ++   +R+   +  +++F+ M R  
Sbjct: 87  SGHVKTGDVSSARDLFDAM------PDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSS 140

Query: 464 KIK-PRAMHYACMI----ELLGREGLLD-EAFALIRG---APFKTTKNMWAALLTACRVN 514
               P  + +  ++    + + +  +    AFA+  G    PF T  N+   L + C V 
Sbjct: 141 SCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVL--LKSYCEVR 198

Query: 515 GNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
             L+L     E++    PEK S  +  L+  Y   G   E+  +   +R+ G
Sbjct: 199 -RLDLACVLFEEI----PEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSG 245


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 256/701 (36%), Positives = 402/701 (57%), Gaps = 13/701 (1%)

Query: 15  QIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKR----SFQRVECCL----MEQGL 66
           Q  N+ S +     N++ +G    S  Y  + KR  K+    + ++V  C+    MEQ  
Sbjct: 4   QTANTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNA 63

Query: 67  KPRPKPNKIYTE--ELKESS-LPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFE 123
                   +Y E   L+E+  + D  +KK  A   + I   V +K   +A+ LF  +  E
Sbjct: 64  HVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHE 123

Query: 124 GGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183
           G     + TY  ++ AC  L +++  K V + +   G E D+ +   +L M+ +CG + +
Sbjct: 124 G-VQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINE 182

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           ARR+FD +   +++S  ++I     SG+  EA+ L L + +E     + T+ +++ A A 
Sbjct: 183 ARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACAS 242

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
              +   K++H  AL  G   +V V  AL+ MY+K GSI+DA+ VFD M  +  V WN +
Sbjct: 243 EGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVM 302

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I  +A HG   EA DL+ +M+  G K D   F  I+  C    +LE  K+ H   +  G 
Sbjct: 303 IGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGL 362

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
            +D+   +ALV  YSK G I+DAR VFD+M  +NV+SWNA+I+G   HG G++A+E+F +
Sbjct: 363 EVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRR 422

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           M  +G++P+ VTF+AVLSACS +GL + G   + +M++ + I+P   H  CM++LLGR G
Sbjct: 423 MTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAG 482

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
            L EA   I        +  W ALL +CR  GN+ELG+  A++   ++P+  + YV+L N
Sbjct: 483 RLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSN 542

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           IY  +GK    + V   +R +G+R  P  SWIEV  + H FL  D SH + KEI    D+
Sbjct: 543 IYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDFLVADSSHPECKEINESKDK 602

Query: 604 MMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           ++ +I   GY+P+ + +L + + +++ + +  HSEKLA+ +GL++T    P+++ ++ R+
Sbjct: 603 VIEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVYGLMHTPPGNPIRVFKNLRV 662

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH A KLI+ V GREI+VRDA+RFHHFKDG+CSCGDYW
Sbjct: 663 CTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/580 (40%), Positives = 358/580 (61%), Gaps = 2/580 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G D     YDA I+AC+  +++ E ++V ++M+   + P +Y+  R+++++VRCG + DA
Sbjct: 36  GADARFHDYDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDA 95

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R + D MPERN+VS   +I+G   SG + EA  LF+ +          T AT++ +    
Sbjct: 96  RNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVH 155

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
           + I   +Q+HS  +K  F  ++FV  +L+DMY K G+I++A+ VFD + E+ TV    II
Sbjct: 156 QSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAII 215

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           +GYA  G  +EALDL+ ++  SG++ ++ TF+ ++   + LASL + KQ H  ++R    
Sbjct: 216 SGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELP 275

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
             IV  ++L+D YSK G++  +R VFD M  ++ ISWNA++ GYG HG G+E V+LF  M
Sbjct: 276 FFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTM 335

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
               ++P+ VT LAVLS CS  GL + G +IF  + ++        HY C+I+LLGR G 
Sbjct: 336 -TEEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQ 394

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L +A  LI   PF+ T  +W +LL ACRV+ N+ +G+  A+KL  MEP    NYV+L NI
Sbjct: 395 LQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNI 454

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           Y ++G  K+   V + +    +   PA SWI + K  H F S ++ H + K+I  K+  +
Sbjct: 455 YAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEV 514

Query: 605 MLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
            +++   G+VP+   +L DV DEQ++R+L  HSEKLA+ FGL+NT     +Q++++ RIC
Sbjct: 515 YVDVKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQVMKNLRIC 574

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCHN  K ++ V GREI +RD +RFH  KDG C+CGDYW
Sbjct: 575 VDCHNFAKFVSKVYGREISLRDKNRFHLLKDGACTCGDYW 614



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 10/204 (4%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL+LF  L +  G      T+  L+++  GL S+   K+V   +L       + ++N +
Sbjct: 226 EALDLFRQL-YSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSL 284

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG ++ +RR+FD MP+R+ +S N ++ G    G   E   LF  + EE      
Sbjct: 285 IDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEEVKPDSV 344

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCA----LIDMYSKCGSIEDAQG 287
              A +   S G  L+  G  +    +K     N  +       +ID+  + G ++ A  
Sbjct: 345 TLLAVLSGCSHG-GLVDEGLDIFDLIVK---EQNAVIHIGHYGCVIDLLGRSGQLQKALD 400

Query: 288 VFDEMS-EKTTVGWNTIIAGYALH 310
           + + M  E T   W +++    +H
Sbjct: 401 LIEHMPFEPTPAIWGSLLGACRVH 424


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/604 (40%), Positives = 368/604 (60%), Gaps = 11/604 (1%)

Query: 105 VLNKRYRE----ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +LN  YR     A+ + + +E  G +   S TY  LI  C+   ++RE KRV  ++ S G
Sbjct: 257 LLNHCYRRDLPSAMHVLDSMERRGVW-ADSITYSELIKCCLAHGAVREGKRVHRHIFSNG 315

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           + P  ++ N ++ M+V+  ++ +A+ LFD+MPERN+VS   +I+   ++     A  L  
Sbjct: 316 YHPKTFLTNILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLA 375

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            ++ +       TF++++RA   L  +   KQLHS  +K+G   +VFV  ALID+YSK G
Sbjct: 376 FMFRDGVMPNMFTFSSVLRACERLYDL---KQLHSWIMKVGLESDVFVRSALIDVYSKMG 432

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            + +A  VF EM    +V WN+IIA +A H   +EAL LY  MR  G   D  T + ++R
Sbjct: 433 ELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLR 492

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            CT L+ LE  +QAH  +++  F  D++ N+AL+D Y K G +EDA+ +F++M  K+VIS
Sbjct: 493 ACTSLSLLELGRQAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVIS 550

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           W+ +IAG   +G   EA+ LFE M + G +PNH+T L VL ACS +GL   GW  F+SM+
Sbjct: 551 WSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMN 610

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
             + I P   HY CM++LLGR   LD+   LI     +     W  LL ACR   N++L 
Sbjct: 611 NLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLA 670

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
            +AA+++  ++P+    YV+L NIY  S +  + AEV RT++++G+R  P CSWIEV KQ
Sbjct: 671 TYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQ 730

Query: 581 PHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKL 639
            H F+ GD+SH Q  EI R++++ +  ++  GYVP+   +L D++ EQ +  L YHSEKL
Sbjct: 731 IHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKL 790

Query: 640 AVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSC 699
           A+ FG+++      ++I ++ +IC DCH   KLIA +  R IV+RD  R+HHF+DG+CSC
Sbjct: 791 AIVFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSC 850

Query: 700 GDYW 703
           GDYW
Sbjct: 851 GDYW 854


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/581 (38%), Positives = 368/581 (63%), Gaps = 2/581 (0%)

Query: 124 GGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183
           G  +   + Y  +++ C  LR +++ + + +++ S+ FE DL + N +L M+ +CG + +
Sbjct: 99  GSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEE 158

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A+ LFD+MP +++VS  ++I+G   SG   EA  LF  +          T +++++AS  
Sbjct: 159 AQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGT 218

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
                 G+QLH+ +LK G+  NV V  +L+DMY++   + +A+ +F+ ++ K  V WN +
Sbjct: 219 GPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNAL 278

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           IAG+A  G  E  + L+ +M   G +  HFT+S +   C    SLE  K  HA +++ G 
Sbjct: 279 IAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGG 338

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
                  + L+D Y+K G I+DA+ VF +++ ++++SWN++I+GY  HG G EA++LFEQ
Sbjct: 339 QPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQ 398

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           ML   ++PN +TFL+VL+ACS SGL + G   F+ M + HKI+ +  H+  +++LLGR G
Sbjct: 399 MLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLGRAG 457

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
            L+EA   I   P K T  +W ALL +CR++ N++LG +AAE+++ ++P     +V+L N
Sbjct: 458 RLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSN 517

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           IY S+G+L +AA+V + ++  G++  PACSW+E++ + HVF++ D SH   +EI R  ++
Sbjct: 518 IYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEK 577

Query: 604 MMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           +  +I + GYVP+   +L  +++Q++ + L YHSEKLA+AF ++ T     ++I ++ RI
Sbjct: 578 ISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRI 637

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH+A K  + V GREI+VRD +RFHHF  GMCSC DYW
Sbjct: 638 CGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/572 (39%), Positives = 360/572 (62%), Gaps = 2/572 (0%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y+A I+ACI  R++ E ++V + M++  + P +++  R++ M+VRCG + DAR + D MP
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           ER++VS   +I+G   +  ++EA  LF+ +          T AT++ + +G + I  GKQ
Sbjct: 73  ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 132

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +HS  +K  F  ++FV  +L+DMY+K  +I++A+ VFD + E+  V    II+GYA  G 
Sbjct: 133 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGL 192

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            EEALDL+ ++   G++ +H TF+ ++   + LASL++ KQ HA ++R      +   ++
Sbjct: 193 DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS 252

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D YSK G++  +R VFD ML ++V+SWNA++ GYG HG G E + LF+  L   ++P+
Sbjct: 253 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKD-LHKEVKPD 311

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            VT LAVLS CS  GL + G +IF ++ ++        HY C+I+LLGR G L++A  LI
Sbjct: 312 SVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLI 371

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
              PF++T ++W +LL ACRV+ N+ +G+  A+KL  MEPE   NYV+L NIY ++G  K
Sbjct: 372 ENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWK 431

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
           +  +V + +  K +   P  SWI + K  H F S ++ H   K+I  K+  + ++I   G
Sbjct: 432 DVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAG 491

Query: 613 YVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           +VP+   +L DV DEQ++R+L  HSEKLA+ FGL+NT     ++++++ RIC DCHN  K
Sbjct: 492 FVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAK 551

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++ V  REI +RD +RFH    G C+CGDYW
Sbjct: 552 FVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 174/348 (50%), Gaps = 28/348 (8%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
            +R+ EAL+LF I     G      T   ++++C G +SI + K+V S ++ T FE  ++
Sbjct: 89  TERHVEALDLF-IKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMF 147

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + + +L M+ +   + +ARR+FD +PER++VSC  II+G    G   EA  LF  L+ E 
Sbjct: 148 VGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEG 207

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
             C   TF T++ A +GL  +  GKQ+H+  L+      V +  +LIDMYSKCG +  ++
Sbjct: 208 MQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSR 267

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VFD M E++ V WN ++ GY  HG   E + L+ ++    VK D  T   ++  C+   
Sbjct: 268 RVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCS--- 323

Query: 347 SLEHAKQAHAGLVRHG---FGLDIVANSAL---------VDFYSKWGRIEDARHVFDKML 394
                   H GLV  G   F   +   SAL         +D   + GR+E A ++ + M 
Sbjct: 324 --------HGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMP 375

Query: 395 CKNVIS-WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            ++  S W +L+     H       EL  Q LL  M P +     +LS
Sbjct: 376 FESTPSIWGSLLGACRVHANVHVG-ELVAQKLLE-MEPENAGNYVILS 421


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/598 (40%), Positives = 366/598 (61%), Gaps = 8/598 (1%)

Query: 112 EALELFEILE-FEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           EA++LF  LE    G++    T   +ISAC  +  +   +++ S  +  G   D  +   
Sbjct: 254 EAIDLF--LEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCC 311

Query: 171 VLLMHVRC---GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDY-LEAFLLFLDLWEEF 226
           ++ M+ +C   G M  AR++FD++ + N+ S   +I G +  G Y  EA  LF  +    
Sbjct: 312 LINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTH 371

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 TF++ ++A A L  + +G+Q+ + A+K+GF     V+ +LI MY++ G I+DA+
Sbjct: 372 VIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDAR 431

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
             FD + EK  + +NT+I  YA +  SEEAL+L+ E+ D G+    FTF+ ++     + 
Sbjct: 432 KAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIG 491

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           ++   +Q HA +++ G  L+    +AL+  YS+ G IE A  VF+ M  +NVISW ++I 
Sbjct: 492 TIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIIT 551

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           G+  HG   +A+ELF +ML  G+RPN VT++AVLSACS  GL   GW+ F+SM  +H + 
Sbjct: 552 GFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVI 611

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           PR  HYACM+++LGR G L EA   I   P+K    +W   L ACRV+GNLELGK AA+ 
Sbjct: 612 PRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKM 671

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           +   EP   + Y++L N+Y S+ K  E + + + ++ K L     CSW+EV+ + H F  
Sbjct: 672 IIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYV 731

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGL 645
           GD SH +  EIY ++  + ++I K GYVP    +L DV +EQ++++L  HSEK+AVAFGL
Sbjct: 732 GDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGL 791

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I+TS   P+++ ++ RIC DCH+AIK I+M TGREI+VRDA+RFHH KDG CSC +YW
Sbjct: 792 ISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 121/393 (30%), Positives = 187/393 (47%), Gaps = 17/393 (4%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N R  +A+   E +  +G       TY   +  CI  RS      V   +  +  + D  
Sbjct: 44  NGRLHKAISTLEHMVHQGSHP-DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEM-PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
             N ++ ++ +CG    A  +F  M   R+L+S + +++   ++     A L F+D+ E 
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF-GDNVFVSCALIDMYSKC-GSIE 283
                   FA   RA +  E +SVG  +    +K G+   +V V C LIDM+ K  G + 
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
            A  VF++M E+  V W  +I      GY+ EA+DL+ EM  SG + D FT S +I  C 
Sbjct: 223 SAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACA 282

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW---GRIEDARHVFDKMLCKNVIS 400
            +  L   +Q H+  +RHG  LD      L++ Y+K    G +  AR +FD++L  NV S
Sbjct: 283 NMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFS 342

Query: 401 WNALIAGYGNH-GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           W A+I GY    G  EEA++LF  M+L  + PNH TF + L AC+       G ++F   
Sbjct: 343 WTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFT-- 400

Query: 460 SRDHKIKPRAMHYAC----MIELLGREGLLDEA 488
              H +K       C    +I +  R G +D+A
Sbjct: 401 ---HAVKLGFSSVNCVANSLISMYARSGRIDDA 430



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 105/216 (48%), Gaps = 3/216 (1%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I+    N    EALELF  +E + G    + T+ +L+S    + +I + +++ + ++ +G
Sbjct: 449 IDAYAKNLNSEEALELFNEIE-DQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSG 507

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            + +  + N ++ M+ RCG +  A ++F++M +RN++S   II G    G   +A  LF 
Sbjct: 508 LKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFH 567

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKC 279
            + EE       T+  ++ A + + L++ G K   S   + G    +     ++D+  + 
Sbjct: 568 KMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRS 627

Query: 280 GSIEDAQGVFDEMSEKT-TVGWNTIIAGYALHGYSE 314
           GS+ +A    + M  K   + W T +    +HG  E
Sbjct: 628 GSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLE 663


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/572 (39%), Positives = 360/572 (62%), Gaps = 2/572 (0%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y+A I+ACI  R++ E ++V + M++  + P +++  R++ M+VRCG + DAR + D MP
Sbjct: 45  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 104

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           ER++VS   +I+G   +  ++EA  LF+ +          T AT++ + +G + I  GKQ
Sbjct: 105 ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 164

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +HS  +K  F  ++FV  +L+DMY+K  +I++A+ VFD + E+  V    II+GYA  G 
Sbjct: 165 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGL 224

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            EEALDL+ ++   G++ +H TF+ ++   + LASL++ KQ HA ++R      +   ++
Sbjct: 225 DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS 284

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D YSK G++  +R VFD ML ++V+SWNA++ GYG HG G E + LF+  L   ++P+
Sbjct: 285 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKD-LHKEVKPD 343

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            VT LAVLS CS  GL + G +IF ++ ++        HY C+I+LLGR G L++A  LI
Sbjct: 344 SVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLI 403

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
              PF++T ++W +LL ACRV+ N+ +G+  A+KL  MEPE   NYV+L NIY ++G  K
Sbjct: 404 ENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWK 463

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
           +  +V + +  K +   P  SWI + K  H F S ++ H   K+I  K+  + ++I   G
Sbjct: 464 DVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAG 523

Query: 613 YVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           +VP+   +L DV DEQ++R+L  HSEKLA+ FGL+NT     ++++++ RIC DCHN  K
Sbjct: 524 FVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAK 583

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++ V  REI +RD +RFH    G C+CGDYW
Sbjct: 584 FVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 174/348 (50%), Gaps = 28/348 (8%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
            +R+ EAL+LF I     G      T   ++++C G +SI + K+V S ++ T FE  ++
Sbjct: 121 TERHVEALDLF-IKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMF 179

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + + +L M+ +   + +ARR+FD +PER++VSC  II+G    G   EA  LF  L+ E 
Sbjct: 180 VGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEG 239

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
             C   TF T++ A +GL  +  GKQ+H+  L+      V +  +LIDMYSKCG +  ++
Sbjct: 240 MQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSR 299

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VFD M E++ V WN ++ GY  HG   E + L+ ++    VK D  T   ++  C+   
Sbjct: 300 RVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCS--- 355

Query: 347 SLEHAKQAHAGLVRHG---FGLDIVANSAL---------VDFYSKWGRIEDARHVFDKML 394
                   H GLV  G   F   +   SAL         +D   + GR+E A ++ + M 
Sbjct: 356 --------HGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMP 407

Query: 395 CKNVIS-WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            ++  S W +L+     H       EL  Q LL  M P +     +LS
Sbjct: 408 FESTPSIWGSLLGACRVHANVHVG-ELVAQKLLE-MEPENAGNYVILS 453


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/577 (40%), Positives = 351/577 (60%), Gaps = 9/577 (1%)

Query: 128 VGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL 187
           VGS   D  + A +GL  IR+ +RVF  M +      + M N ++   +RC M+ DA+ L
Sbjct: 183 VGSPLVD--MYAKMGL--IRDARRVFQEMEAK----TVVMYNTLITGLLRCKMIEDAKGL 234

Query: 188 FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI 247
           F  M +R+ ++   ++ G+  +G  LEA  +F  +  E       TF +++ A   L   
Sbjct: 235 FQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAAS 294

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
             GKQ+H+   +  + DNVFV  AL+DMYSKC SI  A+ VF  M+ +  + W  +I GY
Sbjct: 295 EEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGY 354

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
             +  SEEA+  + EM+  G+K D FT   +I  C  LASLE   Q H   +  G    I
Sbjct: 355 GQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYI 414

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
             ++ALV  Y K G IEDA  +FD+M   + +SW AL+ GY   G+ +E ++LFE+ML+N
Sbjct: 415 TVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVN 474

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G++P+ VTF+ VLSACSR+GL E+G + F SM +DH I P   HY CMI+L  R G   E
Sbjct: 475 GLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKE 534

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A   I+  P       WA LL++CR+ GN+E+GK+AAE L   +P+  ++YV+L +++ +
Sbjct: 535 AEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAA 594

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
            G+  E A + R +R + ++  P CSWI+ K + H+F + DQSH  +  IY K++ +  +
Sbjct: 595 KGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSK 654

Query: 608 ISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
           +++ GY P+  ++L DV D  +  ++S+HSEKLA+AFGLI      P++IV++ R+C DC
Sbjct: 655 MAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDC 714

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           HNA K I+ +TGR+I+VRDA RFH F DG CSCGD+W
Sbjct: 715 HNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 180/396 (45%), Gaps = 36/396 (9%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + +  L  N    EAL++F  +  EG   +   T+ ++++AC  L +  E K++ +Y+  
Sbjct: 248 TMVTGLTQNGLQLEALDVFRRMRAEG-VGIDQYTFGSILTACGALAASEEGKQIHAYITR 306

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           T +E ++++ + ++ M+ +C  +  A  +F  M  RN++S   +I G   +    EA   
Sbjct: 307 TWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRA 366

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F ++  +       T  ++I + A L  +  G Q H  AL  G    + VS AL+ +Y K
Sbjct: 367 FSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGK 426

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CGSIEDA  +FDEMS    V W  ++ GYA  G ++E +DL+ +M  +G+K D  TF  +
Sbjct: 427 CGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGV 486

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C+R           AGLV  G            D++    +  D   + D   C   
Sbjct: 487 LSACSR-----------AGLVEKG-----------CDYFDSMQKDHDIVPIDDHYTC--- 521

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
                +I  Y   GR +EA E  +QM      P+   +  +LS+C   G  E G    ++
Sbjct: 522 -----MIDLYSRSGRFKEAEEFIKQM---PHSPDAFGWATLLSSCRLRGNMEIGKWAAEN 573

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           +       P +  Y  +  +   +G   E   L RG
Sbjct: 574 LLETDPQNPAS--YVLLCSMHAAKGQWTEVAHLRRG 607


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/579 (38%), Positives = 370/579 (63%), Gaps = 2/579 (0%)

Query: 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186
           ++ S T+ A++ A IGL  I   +++ S+++ T F  ++++ N +L  + +   +IDAR+
Sbjct: 207 EIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARK 266

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           LFDEMPE++ VS N+II+G    G +  AF LF +L     D     FATM+  ++    
Sbjct: 267 LFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLD 326

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
             +G+Q+H+  +       + V  +L+DMY+KCG  E+A+ +F  ++ ++ V W  +I+ 
Sbjct: 327 WEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISA 386

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           Y   G+ EE L L+ +MR + V  D  TF+ ++R    +ASL   KQ H+ +++ GF  +
Sbjct: 387 YVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSN 446

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           + + SAL+D Y+K G I+DA   F +M  +N++SWNA+I+ Y  +G  E  ++ F++M+L
Sbjct: 447 VFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVL 506

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
           +G++P+ V+FL VLSACS SGL E G   F SM++ +K+ PR  HYA ++++L R G  +
Sbjct: 507 SGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFN 566

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP-EKLSNYVVLLNIY 545
           EA  L+   P    + MW+++L ACR++ N EL + AA++L+ ME     + YV + NIY
Sbjct: 567 EAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIY 626

Query: 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
            ++G+ +  ++V + +R +G++ LPA SW+E+K + H+F + D+ H Q +EI +K+D + 
Sbjct: 627 AAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLT 686

Query: 606 LEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICC 664
             + + GY P+    L + DE+ +   L YHSE+LA+AF LI+T + +P+ ++++ R C 
Sbjct: 687 KTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNLRACI 746

Query: 665 DCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           DCH AIK+I+ + GREI VRD++RFHHF+DG CSCGD+W
Sbjct: 747 DCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 785



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 219/449 (48%), Gaps = 41/449 (9%)

Query: 108 KRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
            +++EA ELF  ++   G +    T+  L+S C G     ++ +V + ++  G++  L +
Sbjct: 123 NQFKEAFELFVQMQ-RCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIV 181

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            N ++  + +   +  A +LF EMPE             IDS                  
Sbjct: 182 GNTLVDSYCKSNRLDLACQLFKEMPE-------------IDS------------------ 210

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
                TFA ++ A+ GL+ I +G+Q+HS  +K  F  NVFVS AL+D YSK  S+ DA+ 
Sbjct: 211 ----FTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARK 266

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           +FDEM E+  V +N II+GYA  G  + A DL+ E++ +      F F+ ++ I +    
Sbjct: 267 LFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLD 326

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
            E  +Q HA  +      +I+  ++LVD Y+K G+ E+A  +F  +  ++ + W A+I+ 
Sbjct: 327 WEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISA 386

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           Y   G  EE ++LF +M    +  +  TF ++L A +       G ++  S         
Sbjct: 387 YVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQL-HSFIIKSGFMS 445

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAE 525
                + ++++  + G + +A    +  P +   + W A+++A   NG  E  L  F   
Sbjct: 446 NVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVS-WNAMISAYAQNGEAEATLKSFKEM 504

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            L G++P+ +S ++ +L+  + SG ++E 
Sbjct: 505 VLSGLQPDSVS-FLGVLSACSHSGLVEEG 532



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 101/230 (43%), Gaps = 39/230 (16%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           N   +  +I  Y K G++ +A+ +FD M E+T V W  +I GY+     +EA +L+ +M+
Sbjct: 77  NTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQ 136

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
             G + D+ TF  ++  C          Q    +++ G+   ++  + LVD Y K  R++
Sbjct: 137 RCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLD 196

Query: 385 DARHVFDKM-----------LCKNV-------------------ISW-----NALIAGYG 409
            A  +F +M           LC N+                     W     NAL+  Y 
Sbjct: 197 LACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYS 256

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
            H    +A +LF++M       + V++  ++S  +  G  +  +++F+ +
Sbjct: 257 KHDSVIDARKLFDEM----PEQDGVSYNVIISGYAWDGKHKYAFDLFREL 302



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 129/326 (39%), Gaps = 78/326 (23%)

Query: 343 TRLASLEHAK-------QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
           T LASL+  K          A +V+ GF  D   ++  V  + K G +  AR +F+KM  
Sbjct: 16  TSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPH 75

Query: 396 KNVISWNALIAGY---GNHGRG----------------------------EEAVELFEQM 424
           KN +S N +I+GY   GN G                              +EA ELF QM
Sbjct: 76  KNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQM 135

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI--KPRAMHYACMIELLGRE 482
              G  P++VTF+ +LS C+     E G +I Q  ++  K+    R +    +++   + 
Sbjct: 136 QRCGTEPDYVTFVTLLSGCNG---HEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKS 192

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK--------------------- 521
             LD A  L +  P +     +AA+L A     ++ LG+                     
Sbjct: 193 NRLDLACQLFKEMP-EIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNAL 251

Query: 522 ----------FAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLRRKGL--RM 568
                       A KL+   PE+   +Y V+++ Y   GK K A ++ R L+      + 
Sbjct: 252 LDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQ 311

Query: 569 LPACSWIEVKKQPHVFLSGDQSHVQT 594
            P  + + +      +  G Q H QT
Sbjct: 312 FPFATMLSIASNTLDWEMGRQIHAQT 337


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/597 (40%), Positives = 365/597 (61%), Gaps = 6/597 (1%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA++LF  + F G ++    T   +ISAC  +  +   +++ S  +  G   D  +   +
Sbjct: 254 EAIDLFLDMIFSG-YEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCL 312

Query: 172 LLMHVRC---GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDY-LEAFLLFLDLWEEFS 227
           + M+ +C   G M  AR++FD++ + N+ S   +I G +  G Y  EA  LF  +     
Sbjct: 313 INMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHV 372

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
                TF++ ++A A L  + +G+Q+ + A+K+GF     V+ +LI MY++ G I+DA+ 
Sbjct: 373 IPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARK 432

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
            FD + EK  + +NT+I  YA +  SEEAL+L+ E+ D G+    FTF+ ++     + +
Sbjct: 433 AFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGT 492

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           +   +Q HA +++ G  L+    +AL+  YS+ G IE A  VF+ M  +NVISW ++I G
Sbjct: 493 IGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITG 552

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           +  HG   +A+ELF +ML  G+RPN VT++AVLSACS  GL   GW+ F+SM  +H + P
Sbjct: 553 FAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIP 612

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
           R  HYAC++++LGR G L EA   I   P+K    +W   L ACRV+GNLELGK AA+ +
Sbjct: 613 RMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMI 672

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
              EP   + Y++L N+Y S  K  E + + + ++ K L     CSW+EV+ + H F  G
Sbjct: 673 IEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVG 732

Query: 588 DQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLI 646
           D SH +  EIY ++  + ++I K GYVP    +L DV +EQ++++L  HSEK+AVAFGLI
Sbjct: 733 DTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLI 792

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +TS   P+++ ++ RIC DCH+AIK I+M TGREI+VRDA+RFHH KDG CSC +YW
Sbjct: 793 STSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 187/393 (47%), Gaps = 17/393 (4%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N R  +A+   E +  +G       TY   +  CI  RS      V   +  +  + D  
Sbjct: 44  NGRLHKAISTLEHMVHQGSHP-DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSV 102

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEM-PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
             N ++ ++ +CG    A  +F  M   R+L+S + +++   ++     A L F+D+ E 
Sbjct: 103 TLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIEN 162

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF-GDNVFVSCALIDMYSKC-GSIE 283
                   FA   RA +  E +SVG  +    +K G+   +V V C LIDM+ K  G + 
Sbjct: 163 GYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLV 222

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
            A  VF++M E+  V W  +I      GY+ EA+DL+ +M  SG + D FT S +I  C 
Sbjct: 223 SAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACA 282

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW---GRIEDARHVFDKMLCKNVIS 400
            +  L   +Q H+  +RHG  LD      L++ Y+K    G +  AR +FD++L  NV S
Sbjct: 283 NMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFS 342

Query: 401 WNALIAGYGNH-GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           W A+I GY    G  EEA++LF  M+L  + PNH TF + L AC+       G ++F   
Sbjct: 343 WTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFT-- 400

Query: 460 SRDHKIKPRAMHYAC----MIELLGREGLLDEA 488
              H +K       C    +I +  R G +D+A
Sbjct: 401 ---HAVKLGFSSVNCVANSLISMYARSGRIDDA 430



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 105/216 (48%), Gaps = 3/216 (1%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I+    N    EALELF  +E + G    + T+ +L+S    + +I + +++ + ++ +G
Sbjct: 449 IDAYAKNLNSEEALELFNEIE-DQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSG 507

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            + +  + N ++ M+ RCG +  A ++F++M +RN++S   II G    G   +A  LF 
Sbjct: 508 LKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFH 567

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKC 279
            + EE       T+  ++ A + + L++ G K   S   + G    +     ++D+  + 
Sbjct: 568 KMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRS 627

Query: 280 GSIEDAQGVFDEMSEKT-TVGWNTIIAGYALHGYSE 314
           GS+ +A    + M  K   + W T +    +HG  E
Sbjct: 628 GSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLE 663


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/577 (40%), Positives = 351/577 (60%), Gaps = 9/577 (1%)

Query: 128 VGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL 187
           VGS   D  + A +GL  IR+ +RVF  M +      + M N ++   +RC M+ DA+ L
Sbjct: 183 VGSPLVD--MYAKMGL--IRDARRVFQEMEAK----TVVMYNTLITGLLRCKMIEDAKGL 234

Query: 188 FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI 247
           F  M +R+ ++   ++ G+  +G  LEA  +F  +  E       TF +++ A   L  +
Sbjct: 235 FQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAAL 294

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
             GKQ+H+   +  + DNVFV  AL+DMYSKC SI  A+ VF  M+ +  + W  +I GY
Sbjct: 295 EEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGY 354

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
             +  SEEA+  + EM+  G+K D FT   +I  C  LASLE   Q H   +  G    I
Sbjct: 355 GQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYI 414

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
             ++ALV  Y K G IEDA  +FD+M   + +SW AL+ GY   G+ +E ++LFE+ML N
Sbjct: 415 TVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLAN 474

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G++P+ VTF+ VLSACSR+GL E+G + F SM +DH I P   HY CMI+L  R G   E
Sbjct: 475 GLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKE 534

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A   I+  P       WA LL++CR+ GN+E+GK+AAE L   +P+  ++YV+L +++ +
Sbjct: 535 AEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAA 594

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
            G+  E A + R +R + ++  P CSWI+ K + H+F + DQSH  +  IY K++ +  +
Sbjct: 595 KGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSK 654

Query: 608 ISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
           +++ GY P+  ++L DV D  +  ++S+HSEKLA+AFGLI      P++IV++ R+C DC
Sbjct: 655 MAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDC 714

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           HNA K I+ +TGR+I+VRDA RFH F DG CSCGD+W
Sbjct: 715 HNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 162/326 (49%), Gaps = 6/326 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + +  L  N    EAL++F  +  EG   +   T+ ++++AC  L ++ E K++ +Y+  
Sbjct: 248 TMVTGLTQNGLQLEALDVFRRMRAEG-VGIDQYTFGSILTACGALAALEEGKQIHAYITR 306

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           T +E ++++ + ++ M+ +C  +  A  +F  M  RN++S   +I G   +    EA   
Sbjct: 307 TWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRA 366

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F ++  +       T  ++I + A L  +  G Q H  AL  G    + VS AL+ +Y K
Sbjct: 367 FSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGK 426

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CGSIEDA  +FDEMS    V W  ++ GYA  G ++E +DL+ +M  +G+K D  TF  +
Sbjct: 427 CGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGV 486

Query: 339 IRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-CK 396
           +  C+R   +E        + + HG        + ++D YS+ GR ++A     +M    
Sbjct: 487 LSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSP 546

Query: 397 NVISWNALIAG---YGNHGRGEEAVE 419
           +   W  L++     GN   G+ A E
Sbjct: 547 DAFGWATLLSSCRLRGNMEIGKWAAE 572


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/594 (37%), Positives = 369/594 (62%), Gaps = 2/594 (0%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +E+L+ +  +  + G      TY  ++SAC  L ++ + K++ + ++ +    D+ +   
Sbjct: 228 QESLKTYHAM-LQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTA 286

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           +  M+++CG + DAR +F+ +P R++++ N +I G++DSG   EA  +F  + +E     
Sbjct: 287 LTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPD 346

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             T+  ++ A A    ++ GK++H+ A+K G   +V    ALI+MYSK GS++DA+ VFD
Sbjct: 347 RVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFD 406

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            M ++  V W  ++ GYA  G   E+   + +M   GV+ +  T+  +++ C+   +L+ 
Sbjct: 407 RMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKW 466

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            K+ HA +V+ G   D+   +AL+  Y K G +EDA  V + M  ++V++WN LI G   
Sbjct: 467 GKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQ 526

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           +GRG EA++ FE M    MRPN  TF+ V+SAC    L E G   F SM +D+ I P   
Sbjct: 527 NGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMRKDYGIVPTEK 586

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HYACM+++L R G L EA  +I   PFK +  MW ALL ACR +GN+E+G+ AAE+   +
Sbjct: 587 HYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKL 646

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           EP+    YV L  IY ++G  ++ A++ + ++ +G++  P  SWIEV  + H F++GDQS
Sbjct: 647 EPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQS 706

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTS 649
           H +T+EIY +++ +  +I   GYVP+ + ++ D+D++ ++R + +HSEKLA+A+GLI+T 
Sbjct: 707 HPRTEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEKLAIAYGLISTP 766

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             TP+++ ++ R+C DCH A K I+ +TGREI+ RDA RFHHFK+G CSCGDYW
Sbjct: 767 PETPIRVSKNLRVCTDCHTATKFISKITGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  233 bits (593), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 141/453 (31%), Positives = 244/453 (53%), Gaps = 7/453 (1%)

Query: 118 EILEF--EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMH 175
           ++L++  + G  V S  Y  L+ +C+  + +   K+V  ++L  G +P++Y+ N +L ++
Sbjct: 30  DVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLY 89

Query: 176 VRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFA 235
           V CG + +ARRLFD+   +++VS N++I+G    G   EAF LF  + +E  +    TF 
Sbjct: 90  VHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFV 149

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
           +++ A +    ++ G+++H   ++ G  +N  V  ALI MY+KCGS+ DA+ VFD M+ +
Sbjct: 150 SILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASR 209

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             V W T+   YA  GY++E+L  Y+ M   GV+    T+  ++  C  LA+LE  KQ H
Sbjct: 210 DEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIH 269

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
           A +V      D+  ++AL   Y K G ++DAR VF+ +  ++VI+WN +I G  + G+ E
Sbjct: 270 AQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLE 329

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
           EA  +F +ML   + P+ VT+LA+LSAC+R G    G EI     +D  +       A +
Sbjct: 330 EAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNA-L 388

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL--ELGKFAAEKLYGMEPE 533
           I +  + G + +A  +    P +   + W AL+      G +      F      G+E  
Sbjct: 389 INMYSKAGSMKDARQVFDRMPKRDVVS-WTALVGGYADCGQVVESFSTFKKMLQQGVEAN 447

Query: 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           K++ Y+ +L   ++   LK   E+   + + G+
Sbjct: 448 KIT-YMCVLKACSNPVALKWGKEIHAEVVKAGI 479


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/594 (37%), Positives = 375/594 (63%), Gaps = 3/594 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +A+ LF  ++   G      T+ A++ A IGL  I   +++ S+++ T F  ++++ N +
Sbjct: 233 KAVNLFVEMQ-NSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNAL 291

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L  + +   +IDAR+LFDEMPE++ VS N+II+G    G +  AF LF +L     D   
Sbjct: 292 LDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQ 351

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
             FATM+  ++      +G+Q+H+  +       + V  +L+DMY+KCG  E+A+ +F  
Sbjct: 352 FPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTN 411

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           ++ ++ V W  +I+ Y   G+ EE L L+ +MR + V  D  TF+ ++R    +ASL   
Sbjct: 412 LTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLG 471

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           KQ H+ +++ GF  ++ + SAL+D Y+K G I+DA   F +M  +N++SWNA+I+ Y  +
Sbjct: 472 KQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQN 531

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G  E  ++ F++M+L+G++P+ V+FL VLSACS SGL E G   F SM++ +K+ PR  H
Sbjct: 532 GEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREH 591

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           YA ++++L R G  +EA  L+   P    + MW+++L ACR++ N EL + AA++L+ ME
Sbjct: 592 YASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNME 651

Query: 532 P-EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
                + YV + NIY ++G+ +  ++V + +R +G++ LPA SW+E+K + H+F + D+ 
Sbjct: 652 ELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRC 711

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTS 649
           H Q +EI +K+D +   + + GY P+    L + DE+ +   L YHSE+LA+AF LI+T 
Sbjct: 712 HPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTP 771

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + +P+ ++++ R C DCH AIK+I+ + GREI VRD++RFHHF+DG CSCGD+W
Sbjct: 772 EGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 127/449 (28%), Positives = 231/449 (51%), Gaps = 6/449 (1%)

Query: 108 KRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
            +++EA ELF  ++   G +    T+  L+S C G     ++ +V + ++  G++  L +
Sbjct: 128 NQFKEAFELFVQMQ-RCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIV 186

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            N ++  + +   +  A +LF EMPE + VS N +I G    G   +A  LF+++     
Sbjct: 187 GNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGL 246

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
                TFA ++ A+ GL+ I +G+Q+HS  +K  F  NVFVS AL+D YSK  S+ DA+ 
Sbjct: 247 KPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARK 306

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           +FDEM E+  V +N II+GYA  G  + A DL+ E++ +      F F+ ++ I +    
Sbjct: 307 LFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLD 366

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
            E  +Q HA  +      +I+  ++LVD Y+K G+ E+A  +F  +  ++ + W A+I+ 
Sbjct: 367 WEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISA 426

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           Y   G  EE ++LF +M    +  +  TF ++L A +       G ++  S         
Sbjct: 427 YVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQL-HSFIIKSGFMS 485

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAE 525
                + ++++  + G + +A    +  P +   + W A+++A   NG  E  L  F   
Sbjct: 486 NVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVS-WNAMISAYAQNGEAEATLKSFKEM 544

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            L G++P+ +S ++ +L+  + SG ++E 
Sbjct: 545 VLSGLQPDSVS-FLGVLSACSHSGLVEEG 572



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 125/487 (25%), Positives = 228/487 (46%), Gaps = 73/487 (14%)

Query: 149 VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
           V  + + ++ TGF+PD    N  +   ++ G +  AR+LF++MP +N VS NM+I+G + 
Sbjct: 36  VNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVK 95

Query: 209 SGDYLEAFLLF---------------------------LDLWEEFSDCGSR----TFATM 237
           SG+  EA  LF                            +L+ +   CG+     TF T+
Sbjct: 96  SGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTL 155

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           +    G E+ +   Q+ +  +K+G+   + V   L+D Y K   ++ A  +F EM E  +
Sbjct: 156 LSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDS 215

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           V +N +I GY+  G  E+A++L+ EM++SG+K   FTF+ ++     L  +   +Q H+ 
Sbjct: 216 VSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSF 275

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           +++  F  ++  ++AL+DFYSK   + DAR +FD+M  ++ +S+N +I+GY   G+ + A
Sbjct: 276 VIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYA 335

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS---MSRDHKI--------- 465
            +LF ++           F  +LS  S +   E G +I       + D +I         
Sbjct: 336 FDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDM 395

Query: 466 ------------------KPRAMHYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMW 504
                                A+ +  MI    ++G  +E   L   +R A     +  +
Sbjct: 396 YAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATF 455

Query: 505 AALLTACRVNGNLELGKFAAEKLYG--MEPEKLSNYV---VLLNIYNSSGKLKEAAEVIR 559
           A+LL A     +L LGK    +L+   ++   +SN      LL++Y   G +K+A +  +
Sbjct: 456 ASLLRASASIASLSLGK----QLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQ 511

Query: 560 TLRRKGL 566
            +  + +
Sbjct: 512 EMPDRNI 518


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/581 (38%), Positives = 369/581 (63%), Gaps = 3/581 (0%)

Query: 124 GGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183
           G  +   + Y  +++ C  LR +++ + + +++ S+ FE DL + N +L M+ +CG + +
Sbjct: 99  GSLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEE 158

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A+ LFD+MP +++VS  ++I+G   SG   EA  LF  +          T +++++AS  
Sbjct: 159 AQDLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGT 218

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
                 G+QLH+ +LK G+  NV V  +L+DMY++   + +A+ +F+ ++ K  V WN +
Sbjct: 219 GPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNAL 278

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           IAG+A  G  E  + L+ +M   G +  HFT+S ++  C    SLE  K  HA +++ G 
Sbjct: 279 IAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGG 337

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
                  + L+D Y+K G I+DA+ VF +++ ++++SWN++I+GY  HG G EA++LFEQ
Sbjct: 338 QPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQ 397

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           ML   ++PN +TFL+VL+ACS SGL + G   F+ M + HKI+ +  H+  +++LLGR G
Sbjct: 398 MLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLGRAG 456

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
            L+EA   I   P K T  +W ALL ACR++ N++LG +AAE+++ ++P     +V+L N
Sbjct: 457 RLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSN 516

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           IY S+G+L +AA+V + ++  G++  PACSW+E++ + HVF++ D SH   +EI R  ++
Sbjct: 517 IYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQRMWEK 576

Query: 604 MMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           +  +I + GYVP+   +L  +++Q++ + L YHSEKLA+AF ++ T     ++I ++ RI
Sbjct: 577 ISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIKKNIRI 636

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH+A K  + V GREI+VRD +RFHHF  GMCSC DYW
Sbjct: 637 CGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/606 (39%), Positives = 362/606 (59%), Gaps = 3/606 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I  L  N    EA  +F  ++ EG F   S+TY +L++  +   +   VK V  + + 
Sbjct: 305 AMIGGLAQNGCGHEAFTIFLKMQQEG-FVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVE 363

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G   DL + +  + M++RCG + DA+ +FD++  RN+ + N +I G+       EA  L
Sbjct: 364 VGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSL 423

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           FL +  E     + TF  ++ A+ G E +   K++HS A+  G  D + V  AL+ MY+K
Sbjct: 424 FLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVD-LRVGNALVHMYAK 482

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG+   A+ VFD+M E+    W  +I+G A HG   EA  L+ +M   G+  D  T+  I
Sbjct: 483 CGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSI 542

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C    +LE  K+ H+  V  G   D+   +ALV  Y+K G ++DAR VFD ML ++V
Sbjct: 543 LSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDV 602

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
            SW  +I G   HGRG +A++LF +M L G +PN  +F+AVLSACS +GL + G   F S
Sbjct: 603 YSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLS 662

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           +++D+ I+P   HY CM++LLGR G L+EA   I   P +     W ALL AC   GNLE
Sbjct: 663 LTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLE 722

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           + +FAA++   ++P+  S YV+L NIY ++G  ++   V   ++R+G+R  P  SWIEV 
Sbjct: 723 MAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVD 782

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSE 637
            Q H F+ GD SH ++KEIY K+  ++  +   GYVP+ + +L + D++ +++ L  HSE
Sbjct: 783 NQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEYKEQALCSHSE 842

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+ +GL++T    P+++ ++ R+C DCH A K I+ VTGREIV RDA RFHHFKDG+C
Sbjct: 843 KLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGVC 902

Query: 698 SCGDYW 703
           SCGDYW
Sbjct: 903 SCGDYW 908



 Score =  201 bits (512), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 115/341 (33%), Positives = 193/341 (56%), Gaps = 3/341 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +A++++  +  EGG      TY +++ AC    S++  K++ ++++ +GF+ D+ +   +
Sbjct: 13  DAMKVYSQMRREGG-QPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETAL 71

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+V+CG + DA+ +FD+M ERN++S  ++I G+   G   EAF  FL +  E     S
Sbjct: 72  VNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNS 131

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T+ +++ A+A    +   K++HS A+  G   ++ V  AL+ MY+K GSI+DA+ VFD 
Sbjct: 132 YTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDG 191

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC--TRLASLE 349
           M E+    W  +I G A HG  +EA  L+ +M   G   +  T+  I+     T   +LE
Sbjct: 192 MVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALE 251

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             K+ H    + GF  D+   +AL+  Y+K G I+DAR VFD M  ++VISWNA+I G  
Sbjct: 252 WVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLA 311

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
            +G G EA  +F +M   G  P+  T+L++L+    +G  E
Sbjct: 312 QNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWE 352



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 141/452 (31%), Positives = 219/452 (48%), Gaps = 51/452 (11%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R +EA   F  ++ EG F   S TY ++++A     ++  VK V S+ ++ G   DL + 
Sbjct: 111 RGQEAFHRFLQMQREG-FIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVG 169

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N ++ M+ + G + DAR +FD M ER++ S  ++I G+   G   EAF LFL +  E   
Sbjct: 170 NALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQM--ERGG 227

Query: 229 C--GSRTFATMIRASAGLELISVG-----KQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           C     T+ +++ ASA   + S G     K++H  A K GF  ++ V  ALI MY+KCGS
Sbjct: 228 CLPNLTTYLSILNASA---ITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGS 284

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           I+DA+ VFD M ++  + WN +I G A +G   EA  ++ +M+  G   D  T+  ++  
Sbjct: 285 IDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNT 344

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
                + E  K+ H   V  G   D+   SA V  Y + G I+DA+ +FDK+  +NV +W
Sbjct: 345 HVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTW 404

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA----------------CSR 445
           NA+I G      G EA+ LF QM   G  P+  TF+ +LSA                   
Sbjct: 405 NAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAID 464

Query: 446 SGL-------------SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
           +GL             ++ G  ++     D  ++     +  MI  L + G   EAF+L 
Sbjct: 465 AGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLF 524

Query: 493 RG------APFKTTKNMWAALLTACRVNGNLE 518
                    P  TT   + ++L+AC   G LE
Sbjct: 525 LQMLREGIVPDATT---YVSILSACASTGALE 553



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/369 (29%), Positives = 187/369 (50%), Gaps = 7/369 (1%)

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           +I G  + G   +A  ++  +  E       T+ ++++A      +  GK++H+  ++ G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
           F  +V V  AL++MY KCGSI+DAQ +FD+M E+  + W  +I G A +G  +EA   + 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
           +M+  G   + +T+  I+       +LE  K+ H+  V  G  LD+   +ALV  Y+K G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            I+DAR VFD M+ +++ SW  +I G   HGRG+EA  LF QM   G  PN  T+L++L+
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 442 ACSRSGLSERGW--EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499
           A + +      W  E+ +   +   I    +  A +I +  + G +D+A  +  G   + 
Sbjct: 241 ASAITSTGALEWVKEVHKHAGKAGFISDLRVGNA-LIHMYAKCGSIDDARLVFDGMCDRD 299

Query: 500 TKNMWAALLTACRVN--GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
             + W A++     N  G+     F   +  G  P+  + Y+ LLN + S+G  +   EV
Sbjct: 300 VIS-WNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDS-TTYLSLLNTHVSTGAWEWVKEV 357

Query: 558 IRTLRRKGL 566
            +     GL
Sbjct: 358 HKHAVEVGL 366


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/602 (37%), Positives = 368/602 (61%), Gaps = 7/602 (1%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           + + R REAL    +     G D     Y+ +++ C+  R+IRE +RV ++M+ T + P 
Sbjct: 37  IHDTRLREALLHMAL----RGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPC 92

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           +Y+R R+++ +V+C  + DAR +FD MPERN+VS   +I+     G   +A  LF+ +  
Sbjct: 93  VYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLR 152

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
             ++    TFAT++ +  G     +G+Q+HS  +K+ +  +V+V  +L+DMY+K G I +
Sbjct: 153 SGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHE 212

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+G+F  + E+  V    II+GYA  G  EEAL+L+  ++  G++ ++ T++ ++   + 
Sbjct: 213 ARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSG 272

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           LA+L+H KQ H  L+R      +V  ++L+D YSK G +  AR +FD +  + VISWNA+
Sbjct: 273 LAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAM 332

Query: 405 IAGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           + GY  HG G E +ELF  M+  N ++P+ VT LAVLS CS  GL ++G +IF  M+   
Sbjct: 333 LVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGK 392

Query: 464 -KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
             ++P + HY C++++LGR G ++ AF  ++  PF+ +  +W  LL AC V+ NL++G+F
Sbjct: 393 ISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEF 452

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPH 582
              +L  +EPE   NYV+L N+Y S+G+ ++   +   + +K +   P  SWIE+ +  H
Sbjct: 453 VGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLH 512

Query: 583 VFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAV 641
            F + D SH + +E+  KV  +     + GYVP+   +L DVD EQ++++L  HSEKLA+
Sbjct: 513 TFHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLAL 572

Query: 642 AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
            FGLI T +  P++++++ RIC DCHN  K  + + GRE+ +RD +RFH    G CSCGD
Sbjct: 573 TFGLIATPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGD 632

Query: 702 YW 703
           YW
Sbjct: 633 YW 634


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/583 (38%), Positives = 366/583 (62%), Gaps = 10/583 (1%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           ST+   I +C  L  +   ++     L  GFEPDL++ + ++ M+ +CG + DAR LFDE
Sbjct: 153 STFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDE 212

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLD-LWEEFSDCGSR-------TFATMIRASA 242
           +  RN+VS   +I G + + D   A LLF + L EE    G            +++ A +
Sbjct: 213 ISHRNIVSWTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACS 272

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
            +   S+ + +H   +K GF  ++ V   L+D Y+KCG +  ++ VFD M+E+  + WN+
Sbjct: 273 RVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNS 332

Query: 303 IIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           IIA YA +G S E++++++ M +D  +  +  T S ++  C    S    K  H  +++ 
Sbjct: 333 IIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKM 392

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           G   ++   ++++D Y K G++E AR  FD+M  KNV SW+A++AGYG HG  +EA+E+F
Sbjct: 393 GLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVF 452

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
            +M + G++PN++TF++VL+ACS +GL E GW  F++MS +  ++P   HY CM++LLGR
Sbjct: 453 YEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGR 512

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
            G L EAF LI+G   +    +W ALL ACR++ N++LG+ +A KL+ ++P+    YV+L
Sbjct: 513 AGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLL 572

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV 601
            NIY  +G+ ++   +   ++  GL   P  S +++K + HVFL GD+ H Q ++IY  +
Sbjct: 573 SNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYL 632

Query: 602 DRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSH 660
           +++ +++ + GYVP+  ++L DV  E+++ VL  HSEKLAVAFG++NT   T + I+++ 
Sbjct: 633 EKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNL 692

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           R+C DCH AIK I+ +  REIVVRD+ RFHHF+DG+CSCGDYW
Sbjct: 693 RVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 128/430 (29%), Positives = 207/430 (48%), Gaps = 52/430 (12%)

Query: 187 LFDEMPER-NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
           LF++  ++ N+ S N +IA +  SGD +EA   F  + +        TF   I++ + L 
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
            +  G+Q H  AL  GF  ++FVS AL+DMYSKCG + DA+ +FDE+S +  V W ++I 
Sbjct: 167 DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 226

Query: 306 GYALHGYSEEALDLYYEM--------RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           GY  +  +  AL L+ E          D  V +D      ++  C+R++     +  H  
Sbjct: 227 GYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGF 286

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           L++ GF  D+   + L+D Y+K G +  +R VFD M  ++VISWN++IA Y  +G   E+
Sbjct: 287 LIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTES 346

Query: 418 VELFEQMLLNG-MRPNHVTFLAVLSACSRSGLSERGWEIFQS------------------ 458
           +E+F +M+ +G +  N VT  AVL AC+ SG    G  I                     
Sbjct: 347 MEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIID 406

Query: 459 ---------MSR---DHKIKPRAMHYACMIELLGREGLLDEA---FALIRGAPFKTTKNM 503
                    M+R   D   +     ++ M+   G  G   EA   F  +  A  K     
Sbjct: 407 MYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYIT 466

Query: 504 WAALLTACRVNGNLELGKF---AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560
           + ++L AC   G LE G     A    + +EP  + +Y  ++++   +G LKEA ++I  
Sbjct: 467 FVSVLAACSHAGLLEEGWHWFKAMSHEFDVEP-GVEHYGCMVDLLGRAGYLKEAFDLI-- 523

Query: 561 LRRKGLRMLP 570
              KG+++ P
Sbjct: 524 ---KGMKLRP 530



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 94/206 (45%), Gaps = 2/206 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N    E++E+F  +  +G  +  + T  A++ AC    S R  K +   ++  G E +++
Sbjct: 340 NGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVF 399

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   ++ M+ +CG +  AR+ FD M E+N+ S + ++AG    G   EA  +F ++    
Sbjct: 400 VGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAG 459

Query: 227 SDCGSRTFATMIRASAGLELISVGKQ-LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                 TF +++ A +   L+  G     + + +      V     ++D+  + G +++A
Sbjct: 460 VKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEA 519

Query: 286 QGVFDEMSEKTT-VGWNTIIAGYALH 310
             +   M  +   V W  ++    +H
Sbjct: 520 FDLIKGMKLRPDFVVWGALLGACRMH 545


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/659 (35%), Positives = 391/659 (59%), Gaps = 13/659 (1%)

Query: 55  QRVECCLMEQGLKP-RPKPNKIYTEELKESSLPDTQMKKPSAGI--------CSQIEKLV 105
           + V   +++ G++P R   N + +   K  SL D   ++   GI         + IE  V
Sbjct: 116 REVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDA--RRVFDGIRDRNIVSWTAMIEAFV 173

Query: 106 LNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
              +  EA + +E ++   G      T+ +L++A      ++  ++V   +   G E + 
Sbjct: 174 AGNQNLEAYKCYETMKL-AGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEP 232

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            +   ++ M+ +CG +  A+ +FD++PE+N+V+  ++IAG    G    A  L   + + 
Sbjct: 233 RVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQA 292

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                  T+ ++++       +  GK++H   ++ G+G  ++V  ALI MY KCG +++A
Sbjct: 293 EVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEA 352

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
           + +F ++  +  V W  ++ GYA  G+ +EA+DL+  M+  G+K D  TF+  +  C+  
Sbjct: 353 RKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSP 412

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           A L+  K  H  LV  G+ LD+   SALV  Y+K G ++DAR VF++M  +NV++W A+I
Sbjct: 413 AFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMI 472

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
            G   HGR  EA+E FEQM   G++P+ VTF +VLSAC+  GL E G + F+SM  D+ I
Sbjct: 473 TGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGI 532

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
           KP   HY+C ++LLGR G L+EA  +I   PF+   ++W ALL+ACR++ ++E G+ AAE
Sbjct: 533 KPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAE 592

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
            +  ++P+    YV L NIY ++G+ ++A +V + + ++ +   P  SWIEV  + HVF 
Sbjct: 593 NVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFH 652

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFG 644
             D+SH + KEIY ++ ++  +I + GYVP+ + +L DVDE+++ + L  HSE+LA+ +G
Sbjct: 653 VEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYG 712

Query: 645 LINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           L+ T   TP++IV++ R+C DCH A K I+ V GREI+ RDA RFHHF DG+CSCGD+W
Sbjct: 713 LMKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 145/491 (29%), Positives = 250/491 (50%), Gaps = 42/491 (8%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R +EAL +   +  +G   V S  +  L+  C  LRS+ + + V + +L +G +P+ Y+ 
Sbjct: 76  RLKEALGILNTMILQGT-RVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLE 134

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N +L M+ +CG + DARR+FD + +RN+VS   +I   +     LEA+  +  +      
Sbjct: 135 NTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCK 194

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               TF +++ A    EL+ VG+++H    K G      V  +L+ MY+KCG I  AQ +
Sbjct: 195 PDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVI 254

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD++ EK  V W  +IAGYA  G  + AL+L  +M+ + V  +  T++ I++ CT   +L
Sbjct: 255 FDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLAL 314

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
           EH K+ H  +++ G+G +I   +AL+  Y K G +++AR +F  +  ++V++W A++ GY
Sbjct: 315 EHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGY 374

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI------------- 455
              G  +EA++LF +M   G++P+ +TF + L++CS     + G  I             
Sbjct: 375 AQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDV 434

Query: 456 ----------------------FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
                                 F  MS  + +   AM   C      RE L  E F  ++
Sbjct: 435 YLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREAL--EYFEQMK 492

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGK--FAAEKL-YGMEPEKLSNYVVLLNIYNSSGK 550
               K  K  + ++L+AC   G +E G+  F +  L YG++P  + +Y   +++   +G 
Sbjct: 493 KQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKP-MVEHYSCFVDLLGRAGH 551

Query: 551 LKEAAEVIRTL 561
           L+EA  VI T+
Sbjct: 552 LEEAENVILTM 562



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 168/340 (49%), Gaps = 5/340 (1%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           S  F  +++  A L  +  G+++H+  LK G   N ++   L+ MY+KCGS+ DA+ VFD
Sbjct: 96  SDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFD 155

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            + ++  V W  +I  +     + EA   Y  M+ +G K D  TF  ++   T    L+ 
Sbjct: 156 GIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQV 215

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            ++ H  + + G  L+    ++LV  Y+K G I  A+ +FDK+  KNV++W  LIAGY  
Sbjct: 216 GQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQ 275

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
            G+ + A+EL E+M    + PN +T+ ++L  C+     E G ++ + + +    +   +
Sbjct: 276 QGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWV 335

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG--NLELGKFAAEKLY 528
             A +I +  + G L EA  L    P +     W A++T     G  +  +  F   +  
Sbjct: 336 VNA-LITMYCKCGGLKEARKLFGDLPHRDVVT-WTAMVTGYAQLGFHDEAIDLFRRMQQQ 393

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
           G++P+K++ +   L   +S   L+E   + + L   G  +
Sbjct: 394 GIKPDKMT-FTSALTSCSSPAFLQEGKSIHQQLVHAGYSL 432



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/259 (25%), Positives = 127/259 (49%), Gaps = 7/259 (2%)

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G  +EAL +   M   G ++    F  +++ C RL SLE  ++ HA +++ G   +   
Sbjct: 74  QGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYL 133

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            + L+  Y+K G + DAR VFD +  +N++SW A+I  +    +  EA + +E M L G 
Sbjct: 134 ENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGC 193

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH-KIKPRAMHYACMIELLGREGLLDEA 488
           +P+ VTF+++L+A +   L + G ++   +++   +++PR      ++ +  + G + +A
Sbjct: 194 KPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--TSLVGMYAKCGDISKA 251

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME--PEKLSNYVVLLNIYN 546
             +    P K     W  L+      G +++     EK+   E  P K++ Y  +L    
Sbjct: 252 QVIFDKLPEKNVVT-WTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKIT-YTSILQGCT 309

Query: 547 SSGKLKEAAEVIRTLRRKG 565
           +   L+   +V R + + G
Sbjct: 310 TPLALEHGKKVHRYIIQSG 328


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/559 (39%), Positives = 353/559 (63%), Gaps = 5/559 (0%)

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
           I +  R+F  +     E ++ + N ++   +RC  +++A +LFD MPE++ +S   II G
Sbjct: 189 INDANRIFEEIP----EKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITG 244

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
           +  +G + EA   F ++  E       TF +++ A  G   +  GKQ+H+  ++  + DN
Sbjct: 245 LTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDN 304

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
           +FV  AL+DMY KC +++ A+ VF +M  K  + W  ++ GY  +GYSEEA+ ++ +M+ 
Sbjct: 305 IFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQR 364

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
           + +  D FT   +I  C  LASLE   Q H   +  G    +  ++AL+  Y K G +E 
Sbjct: 365 NEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEH 424

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           A  +F +M  ++ +SW AL++GY   G+  E + LFE ML +G+ P+ VTF+ VLSACSR
Sbjct: 425 AHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSR 484

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
           +GL E+G+  F+ M ++H+I P   HY CMI+LL R G L+EA   I   PF      WA
Sbjct: 485 AGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWA 544

Query: 506 ALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
            LL++CR+NGNLE+GK+AAE L+ +EP+  ++Y++L +IY + GK  + A++ + +R  G
Sbjct: 545 TLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMG 604

Query: 566 LRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD 625
           ++  P  SWI+ K + H+F + D+S   + +IY K++ + L++ + GYVP+   +L DV+
Sbjct: 605 VKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVE 664

Query: 626 EQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVR 684
           + E+ ++L++HSEKLA+AFGL+   D   +++V++ R+C DCHNA K I+ +T REI+VR
Sbjct: 665 KSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQREILVR 724

Query: 685 DASRFHHFKDGMCSCGDYW 703
           DA RFH FKDG+CSCGD+W
Sbjct: 725 DAVRFHLFKDGVCSCGDFW 743



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/443 (29%), Positives = 215/443 (48%), Gaps = 40/443 (9%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y+ LI+    L  ++  + VF ++     +P+L+  N +L  + + G + D +R+FD MP
Sbjct: 43  YNNLINTYGKLGDLKNARNVFDHIP----QPNLFSWNTLLSAYSKLGYLQDMQRVFDSMP 98

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGK 251
             ++VS N +++G   +G   E+  ++  + ++ S   +R TF+TM+  S+    + +G+
Sbjct: 99  NHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGR 158

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIED--------------------------- 284
           Q+H    K G+   +FV   L+DMY+K G I D                           
Sbjct: 159 QIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCR 218

Query: 285 ----AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
               A+ +FD M EK ++ W TII G   +G  +EA+D + EM   G  MD FTF  ++ 
Sbjct: 219 FIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLT 278

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C    +L+  KQ HA ++R  +  +I   SAL+D Y K   ++ A  VF KM  KNVIS
Sbjct: 279 ACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVIS 338

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           W A++ GYG +G  EEAV +F  M  N + P+  T  +V+S+C+     E G + F   +
Sbjct: 339 WTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQ-FHGQA 397

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG--NLE 518
               +         +I L G+ G L+ A  L      +   + W AL++     G  N  
Sbjct: 398 LASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVS-WTALVSGYAQFGKANET 456

Query: 519 LGKFAAEKLYGMEPEKLSNYVVL 541
           +  F     +G+ P+ ++   VL
Sbjct: 457 ISLFETMLAHGIVPDGVTFVGVL 479



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 176/350 (50%), Gaps = 6/350 (1%)

Query: 80  LKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISA 139
           ++   L D   +K S    + I  L  N  ++EA++ F+ +  EG F +   T+ ++++A
Sbjct: 221 VEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEG-FCMDQFTFGSVLTA 279

Query: 140 CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSC 199
           C G  ++ E K++ +Y++ T ++ ++++ + +L M+ +C  +  A  +F +M  +N++S 
Sbjct: 280 CGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISW 339

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK 259
             ++ G   +G   EA  +F D+          T  ++I + A L  +  G Q H  AL 
Sbjct: 340 TAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALA 399

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDL 319
            G    V VS ALI +Y KCGS+E A  +F EM  +  V W  +++GYA  G + E + L
Sbjct: 400 SGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISL 459

Query: 320 YYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN-SALVDFYS 378
           +  M   G+  D  TF  ++  C+R   +E        +V+      I  + + ++D  S
Sbjct: 460 FETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLS 519

Query: 379 KWGRIEDARHVFDKM-LCKNVISWNALIAG---YGNHGRGEEAVELFEQM 424
           + GR+E+A++  ++M    + I W  L++     GN   G+ A E   ++
Sbjct: 520 RAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKL 569



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 147/351 (41%), Gaps = 74/351 (21%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI------- 303
           K+LH   ++       F+   LI+ Y K G +++A+ VFD + +     WNT+       
Sbjct: 25  KKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNLFSWNTLLSAYSKL 84

Query: 304 ------------------------IAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMI 338
                                   ++GYA +G   E++ +Y  M +D  V ++  TFS +
Sbjct: 85  GYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRITFSTM 144

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           + + +    ++  +Q H  + + G+   +   S LVD Y+K G I DA  +F+++  KN+
Sbjct: 145 LILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNI 204

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           + +N +I G        EA +LF+ M       + +++  +++  +++GL +   + F+ 
Sbjct: 205 VVYNTMITGLLRCRFIVEAEQLFDNM----PEKDSISWTTIITGLTQNGLFKEAVDKFKE 260

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M                    G EG   + F              + ++LTAC   G L 
Sbjct: 261 M--------------------GIEGFCMDQFT-------------FGSVLTAC--GGFLA 285

Query: 519 LGKFAAEKLYGMEPEKLSNYVV---LLNIYNSSGKLKEAAEVIRTLRRKGL 566
           L +      Y +  +   N  V   LL++Y     +K A  V R +R K +
Sbjct: 286 LDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNV 336



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 75/154 (48%), Gaps = 8/154 (5%)

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           ++  ++ C    +    K+ H  ++R     +    + L++ Y K G +++AR+VFD + 
Sbjct: 8   YTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIP 67

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERG 452
             N+ SWN L++ Y   G  ++   +F+ M      PNH  V++ ++LS  + +GL    
Sbjct: 68  QPNLFSWNTLLSAYSKLGYLQDMQRVFDSM------PNHDVVSWNSLLSGYAGNGLISES 121

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
             ++  M +D  +    + ++ M+ L    G +D
Sbjct: 122 VRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVD 155


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/639 (37%), Positives = 382/639 (59%), Gaps = 19/639 (2%)

Query: 83  SSLPDTQMKKPSAGICSQIEKLVLNKRY----------------REALELFEILEFEGGF 126
           +SL D   K     + SQ+ K +LNK                   EA+ELF  L    G 
Sbjct: 179 NSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELH-NSGI 237

Query: 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186
                T+ AL+SA +GL   +  ++V  ++L T F  ++++ N +L  + +   + +  +
Sbjct: 238 KPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGK 297

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           LF EMPE + +S N++I     +G + E+F LF  L     D     FAT++  +     
Sbjct: 298 LFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLN 357

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           + +G+Q+H  A+ +G      V  AL+DMY+KC   ++AQ +FD ++ K+TV W  +I+ 
Sbjct: 358 LRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISA 417

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           Y   G  EE ++++ +MR +GV  D  TF+ I+R C  LAS+   +Q H+ L+R GF  +
Sbjct: 418 YVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSN 477

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           + + SAL+D Y+K G + DA   F +M  +N +SWNALI+ Y  +G  +  +  F+QM+ 
Sbjct: 478 VYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQ 537

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
           +G +P+ V+FL+VLSACS  G  E     F SM++ +++ P+  HY  M+++L R G  D
Sbjct: 538 SGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFD 597

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP-EKLSNYVVLLNIY 545
           EA  L+   PF+ ++ MW+++L +CR++ N EL K AA++L+ ME     + Y+ + NIY
Sbjct: 598 EAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIY 657

Query: 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
             +G+    A+V + +R +G+R +PA SW+E+K Q HVF + D+SH + K+I RK++ + 
Sbjct: 658 AVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALS 717

Query: 606 LEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICC 664
            E+ K GY P+    L DVDE  +   L YHSE+ A+AF L+NT D +P+ ++++ R C 
Sbjct: 718 KEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACT 777

Query: 665 DCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           DCH AIK+I+ +  REI+VRD+SRFHHFKDG+CSCGDYW
Sbjct: 778 DCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/446 (26%), Positives = 220/446 (49%), Gaps = 6/446 (1%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +EA  L+  +   GG +    T   L+S    L +   + ++ ++++  G+E +L + N 
Sbjct: 122 KEAFRLYADMR-RGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNS 180

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++  + +   +  A +LF  M  ++ V+ N ++ G  + G   EA  LFL+L        
Sbjct: 181 LVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPS 240

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             TFA ++ A+ GL+    G+Q+H   LK  F  NVFV  AL+D YSK   +++   +F 
Sbjct: 241 DFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFX 300

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           EM E   + +N +I  YA +G  +E+ DL+ +++ +      F F+ ++ I T   +L  
Sbjct: 301 EMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRM 360

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            +Q H   +  G   +    +ALVD Y+K    ++A+ +FD + CK+ + W A+I+ Y  
Sbjct: 361 GRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQ 420

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
            G+ EE + +F  M   G+  +  TF ++L AC+       G ++   + R         
Sbjct: 421 KGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRS-GFMSNVY 479

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLY 528
             + +++   + G + +A       P + + + W AL++A   NGN++  L  F      
Sbjct: 480 SGSALLDTYAKCGCMTDAIKSFGEMPERNSVS-WNALISAYAQNGNVDGTLNSFQQMIQS 538

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEA 554
           G +P+ +S ++ +L+  +  G ++EA
Sbjct: 539 GYKPDSVS-FLSVLSACSHCGFVEEA 563



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 128/517 (24%), Positives = 234/517 (45%), Gaps = 88/517 (17%)

Query: 154 SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA--------- 204
           ++++ TGF P+    N  +   +  G ++ A ++FD+MP +N +S NM+I+         
Sbjct: 32  AHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLS 91

Query: 205 -------GMIDS---------GDYL------EAFLLFLDLWEEFSDCGSRTFATMIRASA 242
                  GM++          G YL      EAF L+ D+     +    T  T++    
Sbjct: 92  KARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFG 151

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
            LE  +V  Q+H+  +K+G+  N+ V  +L+D Y K   +  A  +F  M  K TV +N+
Sbjct: 152 ELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNS 211

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           ++ GY+  G +EEA++L+ E+ +SG+K   FTF+ ++     L   +  +Q H  +++  
Sbjct: 212 LMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTN 271

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
           F  ++   +AL+D+YSK  ++++   +F +M   + IS+N +I  Y  +G+ +E+ +LF 
Sbjct: 272 FVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFR 331

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           ++           F  +LS  + S     G               R +H  C        
Sbjct: 332 KLQFTRFDRRQFPFATLLSIATSSLNLRMG---------------RQIH--CQ------- 367

Query: 483 GLLDEAFALIRGAPFKT-TKNMWAALLTACRVNGNLELGKFAAEKLY-GMEPEKLSNYVV 540
                  A+  GA F++  +N    +   C  NG+ E     A+K++  +  +    +  
Sbjct: 368 -------AITVGANFESRVENALVDMYAKC--NGDKE-----AQKIFDNIACKSTVPWTA 413

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGL--------RMLPAC---SWIEVKKQPHVFL--SG 587
           +++ Y   GK +E   V   +RR G+         +L AC   + I + +Q H  L  SG
Sbjct: 414 MISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSG 473

Query: 588 DQSHVQTK----EIYRKVDRMMLEISKHGYVPEEKTL 620
             S+V +     + Y K   M   I   G +PE  ++
Sbjct: 474 FMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSV 510


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 356/574 (62%), Gaps = 1/574 (0%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           + + +++ +C  +  +R  + V  +++  G + DLY  N ++ M+ +   +   R++F+ 
Sbjct: 106 NVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFEL 165

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           MP +++VS N +IAG   SG Y +A  +  ++        + T ++++   +    +  G
Sbjct: 166 MPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKG 225

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           K++H   ++ G   +V++  +L+DMY+K   IED++ VF  +  + ++ WN+++AGY  +
Sbjct: 226 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQN 285

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G   EAL L+ +M  + V+     FS +I  C  LA+L   KQ H  ++R GFG +I   
Sbjct: 286 GRYNEALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIA 345

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           SALVD YSK G I+ AR +FD+M   + +SW A+I G+  HG G EAV LFE+M   G++
Sbjct: 346 SALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVK 405

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           PN V F+AVL+ACS  GL +  W  F SM++ + +     HYA + +LLGR G L+EA+ 
Sbjct: 406 PNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYD 465

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
            I     + T ++W+ LL++C V+ NLEL +  AEK++ ++ E +  YV++ N+Y S+G+
Sbjct: 466 FISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGR 525

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
            KE A++   +R+KGLR  PACSWIE+K + H F+SGD+SH     I   +  +M ++ K
Sbjct: 526 WKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEK 585

Query: 611 HGYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
            GYV +   +L DVDE+ +R L + HSE+LAVAFG+INT   T +++ ++ RIC DCH A
Sbjct: 586 EGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVA 645

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           IK I+ +T REI+VRD SRFHHF  G CSCGDYW
Sbjct: 646 IKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 1/220 (0%)

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
           T+I+    ++  S  KQLH+  ++     +   S  +I +Y+    + +A  VF  +   
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASI-VISIYTNLKLLHEALLVFKTLESP 68

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             + W ++I  +        AL  + EMR SG   DH  F  +++ CT +  L   +  H
Sbjct: 69  PVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVH 128

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
             +VR G   D+   +AL++ YSK   I+  R VF+ M  K+V+S+N +IAGY   G  E
Sbjct: 129 GFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYE 188

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           +A+ +  +M  + ++P+  T  +VL   S      +G EI
Sbjct: 189 DALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEI 228



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 118/259 (45%), Gaps = 7/259 (2%)

Query: 91  KKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVK 150
           ++ S    S +   V N RY EAL LF  +        G+  + ++I AC  L ++   K
Sbjct: 269 RRDSISWNSLVAGYVQNGRYNEALRLFRQM-VSAKVRPGAVAFSSVIPACAHLATLHLGK 327

Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG 210
           ++  Y+L  GF  ++++ + ++ M+ +CG +  AR++FD M   + VS   II G    G
Sbjct: 328 QLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHG 387

Query: 211 DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM-GFGDNVFVS 269
              EA  LF ++  +        F  ++ A + + L+       +   K+ G    +   
Sbjct: 388 HGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHY 447

Query: 270 CALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
            A+ D+  + G +E+A     +M  E T   W+T+++  ++H    + L+L  ++ +   
Sbjct: 448 AAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVH----KNLELAEKVAEKIF 503

Query: 329 KMDHFTFSMIIRICTRLAS 347
            +D       + +C   AS
Sbjct: 504 TIDSENMGAYVLMCNMYAS 522


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/607 (37%), Positives = 374/607 (61%), Gaps = 7/607 (1%)

Query: 100 QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
            ++ L  + + +EAL    IL    G +V    YD +++ C+  R+IRE +RV ++M+ T
Sbjct: 64  NLKTLCSSGQLKEALLQMAIL----GREVKFEGYDTILNECVSQRAIREGQRVHTHMIKT 119

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
            + P +Y+R R+++++ +C  + DAR +FDEMP++N+VS   +I+     G   EA  LF
Sbjct: 120 CYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLF 179

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
           +++    ++    TFAT++ +  G      G+Q+HS A+K  +  ++FV  +L+DMY+K 
Sbjct: 180 VEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKS 239

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           G I DA GVF  + E+  V    II+GYA  G  EEAL L+ +++  G+  +  T++ ++
Sbjct: 240 GRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVL 299

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
              + LA+L H KQ H+ ++R G    +V  ++L+D YSK G +  AR +FD M  +  I
Sbjct: 300 TALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCI 359

Query: 400 SWNALIAGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           SWNA++ GY  HG   E +ELF+ M   N ++P+ +T+LAVLS CS   L + G EIF +
Sbjct: 360 SWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYN 419

Query: 459 MSRDHK-IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
           M      I+P   HY C+++LLGR G ++EAF  I+  PF  T  +W +LL +CRV+ ++
Sbjct: 420 MVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDV 479

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
           E+G    +KL  +EPE   NYV+L N+Y S+GK ++   +   ++ K +   P  SW+E+
Sbjct: 480 EIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVEL 539

Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHS 636
            +  H F + D +H + +E+ +KV  + ++  + GYVP+   +L DVD EQ+++VL  HS
Sbjct: 540 DQIVHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHS 599

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           EKLA+AFGLI T + T ++++++ RIC DCH+  K ++ +  R +++RD +RFH+   G+
Sbjct: 600 EKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGV 659

Query: 697 CSCGDYW 703
           CSCGDYW
Sbjct: 660 CSCGDYW 666


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/639 (37%), Positives = 382/639 (59%), Gaps = 19/639 (2%)

Query: 83  SSLPDTQMKKPSAGICSQIEKLVLNKRY----------------REALELFEILEFEGGF 126
           +SL D   K     + SQ+ K +LNK                   EA+ELF  L    G 
Sbjct: 179 NSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELH-NSGI 237

Query: 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186
                T+ AL+SA +GL   +  ++V  ++L T F  ++++ N +L  + +   + +  +
Sbjct: 238 KPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGK 297

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           LF EMPE + +S N++I     +G + E+F LF  L     D     FAT++  +     
Sbjct: 298 LFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLN 357

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           + +G+Q+H  A+ +G      V  AL+DMY+KC   ++AQ +FD ++ K+TV W  +I+ 
Sbjct: 358 LRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISA 417

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           Y   G  EE ++++ +MR +GV  D  TF+ I+R C  LAS+   +Q H+ L+R GF  +
Sbjct: 418 YVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSN 477

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           + + SAL+D Y+K G + DA   F +M  +N +SWNALI+ Y  +G  +  +  F+QM+ 
Sbjct: 478 VYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQ 537

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
           +G +P+ V+FL+VLSACS  G  E     F SM++ +++ P+  HY  M+++L R G  D
Sbjct: 538 SGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFD 597

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP-EKLSNYVVLLNIY 545
           EA  L+   PF+ ++ MW+++L +CR++ N EL K AA++L+ ME     + Y+ + NIY
Sbjct: 598 EAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIY 657

Query: 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
             +G+    A+V + +R +G+R +PA SW+E+K Q HVF + D+SH + K+I RK++ + 
Sbjct: 658 AVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALS 717

Query: 606 LEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICC 664
            E+ K GY P+    L DVDE  +   L YHSE+ A+AF L+NT D +P+ ++++ R C 
Sbjct: 718 KEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACT 777

Query: 665 DCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           DCH AIK+I+ +  REI+VRD+SRFHHFKDG+CSCGDYW
Sbjct: 778 DCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 116/446 (26%), Positives = 220/446 (49%), Gaps = 6/446 (1%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +EA  L+  +   GG +    T   L+S    L +   + ++ ++++  G+E +L + N 
Sbjct: 122 KEAFRLYADMR-RGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNS 180

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++  + +   +  A +LF  M  ++ V+ N ++ G  + G   EA  LFL+L        
Sbjct: 181 LVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPS 240

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             TFA ++ A+ GL+    G+Q+H   LK  F  NVFV  AL+D YSK   +++   +F 
Sbjct: 241 DFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFY 300

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           EM E   + +N +I  YA +G  +E+ DL+ +++ +      F F+ ++ I T   +L  
Sbjct: 301 EMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRM 360

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            +Q H   +  G   +    +ALVD Y+K    ++A+ +FD + CK+ + W A+I+ Y  
Sbjct: 361 GRQIHCQAITVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQ 420

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
            G+ EE + +F  M   G+  +  TF ++L AC+       G ++   + R         
Sbjct: 421 KGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRS-GFMSNVY 479

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLY 528
             + +++   + G + +A       P + + + W AL++A   NGN++  L  F      
Sbjct: 480 SGSALLDTYAKCGCMTDAIKSFGEMPERNSVS-WNALISAYAQNGNVDGTLNSFQQMIQS 538

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEA 554
           G +P+ +S ++ +L+  +  G ++EA
Sbjct: 539 GYKPDSVS-FLSVLSACSHCGFVEEA 563



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 128/517 (24%), Positives = 234/517 (45%), Gaps = 88/517 (17%)

Query: 154 SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA--------- 204
           ++++ TGF P+    N  +   +  G ++ A ++FD+MP +N +S NM+I+         
Sbjct: 32  AHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLS 91

Query: 205 -------GMIDS---------GDYL------EAFLLFLDLWEEFSDCGSRTFATMIRASA 242
                  GM++          G YL      EAF L+ D+     +    T  T++    
Sbjct: 92  KARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFG 151

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
            LE  +V  Q+H+  +K+G+  N+ V  +L+D Y K   +  A  +F  M  K TV +N+
Sbjct: 152 ELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNS 211

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           ++ GY+  G +EEA++L+ E+ +SG+K   FTF+ ++     L   +  +Q H  +++  
Sbjct: 212 LMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTN 271

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
           F  ++   +AL+D+YSK  ++++   +F +M   + IS+N +I  Y  +G+ +E+ +LF 
Sbjct: 272 FVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFR 331

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           ++           F  +LS  + S     G               R +H  C        
Sbjct: 332 KLQFTRFDRRQFPFATLLSIATSSLNLRMG---------------RQIH--CQ------- 367

Query: 483 GLLDEAFALIRGAPFKT-TKNMWAALLTACRVNGNLELGKFAAEKLY-GMEPEKLSNYVV 540
                  A+  GA F++  +N    +   C  NG+ E     A+K++  +  +    +  
Sbjct: 368 -------AITVGANFESRVENALVDMYAKC--NGDKE-----AQKIFDNIACKSTVPWTA 413

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGL--------RMLPAC---SWIEVKKQPHVFL--SG 587
           +++ Y   GK +E   V   +RR G+         +L AC   + I + +Q H  L  SG
Sbjct: 414 MISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSG 473

Query: 588 DQSHVQTK----EIYRKVDRMMLEISKHGYVPEEKTL 620
             S+V +     + Y K   M   I   G +PE  ++
Sbjct: 474 FMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSV 510


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 230/607 (37%), Positives = 374/607 (61%), Gaps = 7/607 (1%)

Query: 100 QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
            ++ L  + + +EAL    IL    G +V    YD++++ C+  R+IRE +RV ++M+ T
Sbjct: 36  NLKTLCSSGQLKEALLQMAIL----GREVKFEGYDSILNECVSQRAIREGQRVHTHMIKT 91

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
            + P +Y+R R+++++ +C  + DAR +FDEMP+RN+VS   +I+     G   EA  LF
Sbjct: 92  CYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLF 151

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
           +++    ++    TFAT++ +  G      G+Q+HS A+K  +  ++FV  +L+DMY+K 
Sbjct: 152 VEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKS 211

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           G I DA GVF  + E+  V    II+GYA  G  EEAL L+ +++  G+  +  T++ ++
Sbjct: 212 GRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVL 271

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
              + LA+L H KQ H+ ++R G    +V  ++L+D YSK G +  AR +FD M  +  I
Sbjct: 272 TALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCI 331

Query: 400 SWNALIAGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           SWNA++ GY  HG   E +ELF+ M   N ++P+ +T+LAVLS CS   L + G EIF +
Sbjct: 332 SWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYN 391

Query: 459 MSRDHK-IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
           M      I+P   HY C+++LLGR G ++EAF  I+  PF  T  +W +LL +CRV+ ++
Sbjct: 392 MVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDV 451

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
           E+G    +KL  +EPE   NYV+L N+Y S+GK ++   +   ++ K +   P  SW+E+
Sbjct: 452 EIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVEL 511

Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHS 636
            +  H F + D +H + +E+  KV  + ++  + GYVP+   +L DVD EQ+++VL  HS
Sbjct: 512 DQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHS 571

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           EKLA+AFGLI T + T ++++++ RIC DCH+  K ++ +  R +++RD +RFH+   G+
Sbjct: 572 EKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGV 631

Query: 697 CSCGDYW 703
           CSCGDYW
Sbjct: 632 CSCGDYW 638


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/564 (39%), Positives = 351/564 (62%), Gaps = 2/564 (0%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y+ L+  C   + + + + V +++L + F  D+ M N +L M+ +CG + +AR++F++MP
Sbjct: 63  YNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMP 122

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           +R+ V+   +I+G        +A L F  +          T +++I+A+A       G Q
Sbjct: 123 QRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQ 182

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LH   +K GF  NV V  AL+D+Y++ G ++DAQ VFD +  +  V WN +IAG+A    
Sbjct: 183 LHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSG 242

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
           +E+AL+L+  M   G +  HF+++ +   C+    LE  K  HA +++ G  L   A + 
Sbjct: 243 TEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT 302

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D Y+K G I DAR +FD++  ++V+SWN+L+  Y  HG G+EAV  FE+M   G+RPN
Sbjct: 303 LLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPN 362

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            ++FL+VL+ACS SGL + GW  ++ M +D  I P A HY  +++LLGR G L+ A   I
Sbjct: 363 EISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFI 421

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
              P + T  +W ALL ACR++ N ELG +AAE ++ ++P+    +V+L NIY S G+  
Sbjct: 422 EEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWN 481

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
           +AA V + ++  G++  PACSW+E++   H+F++ D+ H Q +EI RK + ++ +I + G
Sbjct: 482 DAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELG 541

Query: 613 YVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           YVP+   ++  VD+QE+ V L YHSEK+A+AF L+NT   + + I ++ R+C DCH AIK
Sbjct: 542 YVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIK 601

Query: 672 LIAMVTGREIVVRDASRFHHFKDG 695
           L + V GREI+VRD +RFHHFKD 
Sbjct: 602 LASKVVGREIIVRDTNRFHHFKDA 625



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 186/351 (52%), Gaps = 11/351 (3%)

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           DL   +     R + T+++     +L+  G+ +H+  L+  F  ++ +   L++MY+KCG
Sbjct: 50  DLEGSYIPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCG 109

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           S+E+A+ VF++M ++  V W T+I+GY+ H    +AL  + +M   G   + FT S +I+
Sbjct: 110 SLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIK 169

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
                       Q H   V+ GF  ++   SAL+D Y+++G ++DA+ VFD +  +N +S
Sbjct: 170 AAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS 229

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           WNALIAG+      E+A+ELF+ ML +G RP+H ++ ++  ACS +G  E+G  +   M 
Sbjct: 230 WNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMI 289

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
           +  + K  A     ++++  + G + +A  +      +   + W +LLTA   +G    G
Sbjct: 290 KSGE-KLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVS-WNSLLTAYAQHG---FG 344

Query: 521 K-----FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           K     F   +  G+ P ++S ++ +L   + SG L E       +++ G+
Sbjct: 345 KEAVWWFEEMRRVGIRPNEIS-FLSVLTACSHSGLLDEGWHYYELMKKDGI 394



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 10/208 (4%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +ALELF+ +    GF     +Y +L  AC     + + K V +YM+ +G +   +  N +
Sbjct: 245 KALELFQGM-LRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTL 303

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L M+ + G + DAR++FD + +R++VS N ++      G   EA   F    EE    G 
Sbjct: 304 LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWF----EEMRRVGI 359

Query: 232 R----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
           R    +F +++ A +   L+  G   +    K G     +    ++D+  + G +  A  
Sbjct: 360 RPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALR 419

Query: 288 VFDEMS-EKTTVGWNTIIAGYALHGYSE 314
             +EM  E T   W  ++    +H  +E
Sbjct: 420 FIEEMPIEPTAAIWKALLNACRMHKNTE 447


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 229/580 (39%), Positives = 351/580 (60%), Gaps = 5/580 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           GF   +     L+     +  + + KR F  + S     ++ M N ++   +RC M+ +A
Sbjct: 170 GFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSK----NVVMYNTMITGLLRCKMVEEA 225

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           RRLF+ M +R+ ++   ++ G   +G   EA  +F  +  +       TF +++ A   L
Sbjct: 226 RRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGAL 285

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             +  GKQ+H+  ++  + DNVFV  AL+DMYSKC SI+ A+ VF  M+ K  + W  +I
Sbjct: 286 SALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALI 345

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
            GY  +G SEEA+ ++ EM+  G+  D +T   +I  C  LASLE   Q H   +  G  
Sbjct: 346 VGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLM 405

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
             I  ++ALV  Y K G IEDA  +FD+M   + +SW AL++GY   GR +E ++LFE+M
Sbjct: 406 HYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKM 465

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
           L  G++P+ VTF+ VLSACSR+G  E+G   F SM +DH I P   HY CMI+L  R G 
Sbjct: 466 LAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGK 525

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L EA   I+  P       W  LL+ACR+ G++E+GK+AAE L  ++P+  ++YV+L ++
Sbjct: 526 LKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSM 585

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           + + G+  E A++ R +R + ++  P CSWI+ K + H+F + DQSH  +K IY K++ +
Sbjct: 586 HAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWL 645

Query: 605 MLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
             ++ + GY P+  ++L DV D  +  ++S+HSEKLA+AFGLI      P++IV++ R+C
Sbjct: 646 NSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLIFVPQEMPIRIVKNLRVC 705

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCHNA K I+ +TGR+I+VRDA RFH F DG+CSCGD+W
Sbjct: 706 VDCHNATKFISKITGRDILVRDAVRFHKFSDGVCSCGDFW 745


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/572 (37%), Positives = 358/572 (62%), Gaps = 2/572 (0%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y +LI+AC   RS+ + + + +++  + F   +++ N ++ ++ +CG + DARR+FD MP
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
            R++ S   +IAG   +    EA  L   +          TFA++++A+       +G+Q
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H+  +K  + D+V+V  AL+DMY++CG ++ A  VFD++  K  V WN +IAG+A  G 
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            E  L ++ EM+ +G +  HFT+S +      + +LE  K  HA +++ G  L     + 
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNT 306

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           ++D Y+K G + DAR VFD++  K+V++WN+++  +  +G G EAV  FE+M   G+  N
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLN 366

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            +TFL++L+ACS  GL + G + F  M +++ ++P   HY  +++LLGR GLL++A   I
Sbjct: 367 QITFLSILTACSHGGLVKEGKQYFD-MMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
              P K T  +W ALL +CR++ N ++G+FAA+ ++ ++P+     V+L NIY S+G+  
Sbjct: 426 FKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWD 485

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
            AA V + ++  G++  PACSW+E++   H+F++ D +H +++EIY+K + + ++I K G
Sbjct: 486 AAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAG 545

Query: 613 YVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           YVP    +L  VDEQE++  L YHSEK+A+AF LIN      ++I+++ RIC DCH+A +
Sbjct: 546 YVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFR 605

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            I+ V  REIVVRD +RFHHF  G CSCGDYW
Sbjct: 606 YISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 154/318 (48%), Gaps = 5/318 (1%)

Query: 93  PSAGICSQ---IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV 149
           P+  +CS    I     N    EAL L   +   G F     T+ +L+ A     S    
Sbjct: 126 PARDMCSWTSLIAGYAQNDMPDEALGLLPGM-LRGRFKPNGFTFASLLKAAGASASSGIG 184

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           +++ +  +   +  D+Y+ + +L M+ RCG M  A  +FD++  +N VS N +IAG    
Sbjct: 185 EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 244

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
           GD     L+F ++     +    T++++  A AG+  +  GK +H+  +K G   + FV 
Sbjct: 245 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG 304

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
             ++DMY+K GS+ DA+ VFD + +K  V WN+++  +A +G   EA+  + EMR  GV 
Sbjct: 305 NTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVH 364

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
           ++  TF  I+  C+    ++  KQ    +  +    +I     +VD   + G + DA   
Sbjct: 365 LNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVF 424

Query: 390 FDKMLCKNVIS-WNALIA 406
             KM  K   + W AL+ 
Sbjct: 425 IFKMPMKPTAAVWGALLG 442


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/601 (38%), Positives = 371/601 (61%), Gaps = 5/601 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N    +AL+LF  ++ EG       T+ A++       ++ +  +V + ++ +G +  ++
Sbjct: 171 NGLNEQALKLFSQMQLEG-IKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIF 229

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N ++ M+ +  M+ DA+ +FD M  RN VS N +IAG + +G  LEAF LF  +  E 
Sbjct: 230 VGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEG 289

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                  FAT+I+  A ++ +S  KQLH   +K G   ++ +  AL+  YSKC  I+DA 
Sbjct: 290 VKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAF 349

Query: 287 GVFDEM-SEKTTVGWNTIIAGYALHGYSEEALDLYYEMR-DSGVKMDHFTFSMIIRICTR 344
            +F  M   +  V W  II+GY  +G ++ A++L+ +MR + GV+ + FTFS ++  C  
Sbjct: 350 KLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAA 409

Query: 345 -LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
             AS+E  KQ H+  ++ GF   +  +SALV  Y+K G IE A  VF + + ++++SWN+
Sbjct: 410 PTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNS 469

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           +I+GY  HG G++++++FE+M    +  + +TF+ V+SAC+ +GL   G   F  M +D+
Sbjct: 470 MISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDY 529

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            I P   HY+CM++L  R G+L++A  LI   PF     +W  LL ACRV+ N++LG+ A
Sbjct: 530 HIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELA 589

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
           AEKL  ++P+  + YV+L NIY ++G  +E A+V + +  K ++     SWIEVK +   
Sbjct: 590 AEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFS 649

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVA 642
           F++GD SH Q+  IY K++ + + +   GY P+ K +L DV+E+ + V LS HSE+LA+A
Sbjct: 650 FMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIA 709

Query: 643 FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           FGLI T   TP+QIV++ R+C DCH  IKLI+ + GR+IVVRD++RFHHFK G CSCGDY
Sbjct: 710 FGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDY 769

Query: 703 W 703
           W
Sbjct: 770 W 770



 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 200/385 (51%), Gaps = 5/385 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDAL-ISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           N + +EAL LF  L   G    GSS    L +  C+  R +   K+V    +  GF  D+
Sbjct: 70  NDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVG--KQVHCQCIKCGFVEDV 127

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            +   ++ M+++   + D  R+FDEM  +N+VS   ++AG   +G   +A  LF  +  E
Sbjct: 128 SVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLE 187

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                  TFA ++   A    +  G Q+H+  +K G    +FV  ++++MYSK   + DA
Sbjct: 188 GIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDA 247

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
           + VFD M  +  V WN++IAG+  +G   EA +L+Y MR  GVK+    F+ +I++C  +
Sbjct: 248 KAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANI 307

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-CKNVISWNAL 404
             +  AKQ H  ++++G   D+   +AL+  YSK   I+DA  +F  M   +NV+SW A+
Sbjct: 308 KEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAI 367

Query: 405 IAGYGNHGRGEEAVELFEQMLL-NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           I+GY  +GR + A+ LF QM    G+ PN  TF +VL+AC+    S    + F S S   
Sbjct: 368 ISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKS 427

Query: 464 KIKPRAMHYACMIELLGREGLLDEA 488
                    + ++ +  + G ++ A
Sbjct: 428 GFSNALCVSSALVTMYAKRGNIESA 452



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 146/261 (55%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           +++LFDE P++ L   N ++     +    EA  LFL L    S     + + +++    
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L    VGKQ+H   +K GF ++V V  +L+DMY K  S+ED + VFDEM  K  V W ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           +AGY  +G +E+AL L+ +M+  G+K + FTF+ ++       ++E   Q H  +++ G 
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
              I   +++V+ YSK   + DA+ VFD M  +N +SWN++IAG+  +G   EA ELF +
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 424 MLLNGMRPNHVTFLAVLSACS 444
           M L G++     F  V+  C+
Sbjct: 285 MRLEGVKLTQTIFATVIKLCA 305



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 129/249 (51%), Gaps = 5/249 (2%)

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           +Q +FDE  ++     N ++  ++ +  ++EAL+L+  +R SG   D  + S ++++C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           L      KQ H   ++ GF  D+   ++LVD Y K   +ED   VFD+M  KNV+SW +L
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           +AGY  +G  E+A++LF QM L G++PN  TF AVL   +  G  E+G ++  +M     
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQV-HTMVIKSG 223

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           +         M+ +  +  ++ +A A+      +   + W +++     NG L+L  F  
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVS-WNSMIAGFVTNG-LDLEAF-- 279

Query: 525 EKLYGMEPE 533
           E  Y M  E
Sbjct: 280 ELFYRMRLE 288


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/583 (39%), Positives = 365/583 (62%), Gaps = 2/583 (0%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           E G    SST   ++      +++   K +  Y +   F+  + +   +L M+ +C  ++
Sbjct: 203 EEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLL 262

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL-WEEFSDCGSRTFATMIRAS 241
            AR++FD M  RN VS + +I G + S    EA  LF  +  ++  D    T  +++RA 
Sbjct: 263 YARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRAC 322

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
           A L  +S G++LH   +K+G   ++ +   L+ MY+KCG I+DA   FDEM+ K +V ++
Sbjct: 323 AKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFS 382

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
            I++G   +G +  AL ++  M+ SG+  D  T   ++  C+ LA+L+H   +H  L+  
Sbjct: 383 AIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR 442

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           GF  D +  +AL+D YSK G+I  AR VF++M   +++SWNA+I GYG HG G EA+ LF
Sbjct: 443 GFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLF 502

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
             +L  G++P+ +TF+ +LS+CS SGL   G   F +MSRD  I PR  H  CM+++LGR
Sbjct: 503 HDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGR 562

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
            GL+DEA   IR  PF+    +W+ALL+ACR++ N+ELG+  ++K+  + PE   N+V+L
Sbjct: 563 AGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLL 622

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV 601
            NIY+++G+  +AA +  T +  GL+ +P CSWIE+    H F+ GDQSH+Q  +I RK+
Sbjct: 623 SNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKL 682

Query: 602 DRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSH 660
           + +++E+ + GY  E   +  DV+E+E +++L YHSEKLA+AFG++N     P+ + ++ 
Sbjct: 683 EELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNL 742

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           R+C DCH AIK + ++T REI VRDA+RFHHFK+G C+CGD+W
Sbjct: 743 RVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/419 (29%), Positives = 217/419 (51%), Gaps = 31/419 (7%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           + Y  L+ ACI  +S+ E K++  + L      D  + +++  +++ C  ++ ARRLFDE
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLEL 246
           +P  +++  N II     +G +  A    +DL+      G R    T+  +++A +GL  
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGA----IDLYHSMLHLGVRPNKYTYPFVLKACSGLLA 124

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           I  G ++HS A   G   +VFV  AL+D Y+KCG + +AQ +F  MS +  V WN +IAG
Sbjct: 125 IEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
            +L+G  ++A+ L  +M++ G+  +  T   ++       +L H K  H   VR  F   
Sbjct: 185 CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNG 244

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +V  + L+D Y+K   +  AR +FD M  +N +SW+A+I GY      +EA+ELF+QM+L
Sbjct: 245 VVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMIL 304

Query: 427 -NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL------ 479
            + M P  VT  +VL AC++             +SR  K+    +    ++++L      
Sbjct: 305 KDAMDPTPVTLGSVLRACAK----------LTDLSRGRKLHCYIIKLGSVLDILLGNTLL 354

Query: 480 ---GREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN--LELGKFAAEKLYGMEPE 533
               + G++D+A         K + + ++A+++ C  NGN  + L  F   +L G++P+
Sbjct: 355 SMYAKCGVIDDAIRFFDEMNPKDSVS-FSAIVSGCVQNGNAAVALSIFRMMQLSGIDPD 412



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 159/330 (48%), Gaps = 27/330 (8%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +EALELF+ +  +   D    T  +++ AC  L  +   +++  Y++  G   D+ + N 
Sbjct: 293 KEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNT 352

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           +L M+ +CG++ DA R FDEM  ++ VS + I++G + +G+   A  +F  +     D  
Sbjct: 353 LLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPD 412

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             T   ++ A + L  +  G   H   +  GF  +  +  ALIDMYSKCG I  A+ VF+
Sbjct: 413 LTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFN 472

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            M     V WN +I GY +HG   EAL L++++   G+K D  TF  ++  C+       
Sbjct: 473 RMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS------- 525

Query: 351 AKQAHAGLVRHG-FGLDIVANS-----------ALVDFYSKWGRIEDARHVFDKM-LCKN 397
               H+GLV  G    D ++              +VD   + G I++A H    M    +
Sbjct: 526 ----HSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPD 581

Query: 398 VISWNALIAG---YGNHGRGEEAVELFEQM 424
           V  W+AL++    + N   GEE  +  + +
Sbjct: 582 VRIWSALLSACRIHKNIELGEEVSKKIQSL 611


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/584 (37%), Positives = 363/584 (62%), Gaps = 11/584 (1%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           ST+   I +C  L  +   K+     L  GFE DL++ + ++ M+ +CG + +AR LFDE
Sbjct: 83  STFPCAIKSCSALFDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDE 142

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS-- 248
           +P RN+V+   +I G + + D  EA ++F +   E S+       T + + A + ++S  
Sbjct: 143 IPRRNIVTWTSLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSAC 202

Query: 249 -------VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
                  V + +H  A+K+G    + V   L+D Y+KCG +  ++ VFD+M+EK  V WN
Sbjct: 203 SRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWN 262

Query: 302 TIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           ++IA YA +G S +A ++++ M +  G K +  T S ++  C    +L      H  +++
Sbjct: 263 SMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIK 322

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
            G+  +++  ++++D Y K G+ E AR+ FD M  KNV SW A+IAGYG HG   EA+++
Sbjct: 323 MGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDV 382

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
           F QM+  G++PN++TF++VL+ACS +G  E GW  F +MS ++ ++P   HY CM++LLG
Sbjct: 383 FYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLG 442

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540
           R G + EA+ LI+    +    +W +LL ACR++ ++EL + +A +L+ ++P     YV+
Sbjct: 443 RAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVL 502

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRK 600
           L NIY  +G+ K+   +   ++ +GL   P  S +E+K + HVFL GD+ H Q ++IY+ 
Sbjct: 503 LANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKY 562

Query: 601 VDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQS 659
           ++ + +++ + GYVP   ++L DVDE+E+  ++  HSEKLAVAFG++N+   + + ++++
Sbjct: 563 LEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKN 622

Query: 660 HRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            R+C DCH  IKLI+ +  REI+VRDA RFHHFKDG+CSCGDYW
Sbjct: 623 LRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/396 (27%), Positives = 199/396 (50%), Gaps = 19/396 (4%)

Query: 99  SQIEKLVLNKRYREALELFEILEFE----GGFDVGSSTYD----ALISACIGLRSIREVK 150
           S I   V N    EAL +F+   FE     G +VG+S       +++SAC  + +    +
Sbjct: 153 SLITGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSE 212

Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG 210
            V    +  G +  + + N +L  + +CG +  +R++FD+M E+++VS N +IA    +G
Sbjct: 213 GVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNG 272

Query: 211 DYLEAFLLFLDLWEE-FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
              +AF +F  + +         T +T++ A A    + VG  LH   +KMG+ +NV ++
Sbjct: 273 LSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMA 332

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            ++IDMY KCG  E A+  FD M EK    W  +IAGY +HG++ EALD++Y+M  +GVK
Sbjct: 333 TSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVK 392

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD--IVANSALVDFYSKWGRIEDAR 387
            ++ TF  ++  C+    LE   +    +  H + ++  +     +VD   + G I++A 
Sbjct: 393 PNYITFISVLAACSHAGFLEEGWRWFNAM-SHEYNVEPGVEHYGCMVDLLGRAGYIKEAY 451

Query: 388 HVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           ++   M + ++ + W +L+A    H +  E  E+  + L   + P++  +  +L+     
Sbjct: 452 NLIKSMKVRRDFVLWGSLLAACRIH-KDVELAEISARELFK-LDPSNCGYYVLLANIYAD 509

Query: 447 GLSERGWEIFQSMSRDHK-IKPRAMHYACMIELLGR 481
               +  E  + + +D   +KP       ++EL GR
Sbjct: 510 AGRWKDVERMRILVKDRGLVKPPGY---SLVELKGR 542



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 154/331 (46%), Gaps = 49/331 (14%)

Query: 288 VFDEMSEKTTV-GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
           +F++  ++T V  WN++IA  A  G S E+L  +  MR   +K +  TF   I+ C+ L 
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
            L   KQAH   +  GF  D+  +SAL+D YSK G++ +AR +FD++  +N+++W +LI 
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT 156

Query: 407 GYGNHGRGEEAVELFEQMLLN---------GMRPNHVTFLAVLSACSRS----------- 446
           GY  +    EA+ +F++ L           G   + V  ++VLSACSR            
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHG 216

Query: 447 -----------GLSERGWEIFQ-----SMSR---DHKIKPRAMHYACMIELLGREGLLDE 487
                      G+     + +      S+SR   D   +   + +  MI +  + GL  +
Sbjct: 217 VAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTD 276

Query: 488 AF----ALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV--- 540
           AF     +++    K  +   + LL AC   G L +G    +++  M    ++N ++   
Sbjct: 277 AFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKM--GYVNNVIMATS 334

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           ++++Y   G+ + A      ++ K +R   A
Sbjct: 335 IIDMYCKCGQAEMARNAFDGMKEKNVRSWTA 365



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 93/226 (41%), Gaps = 2/226 (0%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   +K      S I     N    +A E+F  +   GG      T   L+ AC    ++
Sbjct: 251 DDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGAL 310

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
           R    +   ++  G+  ++ M   ++ M+ +CG    AR  FD M E+N+ S   +IAG 
Sbjct: 311 RVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGY 370

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDN 265
              G   EA  +F  +          TF +++ A +    +  G +  ++ + +      
Sbjct: 371 GMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPG 430

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALH 310
           V     ++D+  + G I++A  +   M   +  V W +++A   +H
Sbjct: 431 VEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIH 476


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/520 (41%), Positives = 338/520 (65%), Gaps = 1/520 (0%)

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R++FDEMPE+++VS N ++ G  +SG + EA  L  ++W +     S T ++++   A  
Sbjct: 127 RKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEG 186

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             +  G +LH  A + GF D+VFV  +LIDMY+ C   + +  VFD +  +  + WN+++
Sbjct: 187 ADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSML 246

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           AG A +G  +EAL L+  M  SG+K    TFS +I  C  LASL   KQ HA ++R GF 
Sbjct: 247 AGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFD 306

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            ++  +S+L+D Y K G +  AR +FD++   +++SW A+I G+  HG   EA+ LF++M
Sbjct: 307 GNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRM 366

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
            L  ++PNH+TFLAVL+ACS +GL ++GW+ F SMS  + I P   H+A + + LGR G 
Sbjct: 367 ELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGK 426

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L+EA+  I G   K T ++W+ LL AC+V+ N  L +  A+K++ +EP  + ++++L N 
Sbjct: 427 LEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNT 486

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           Y+SSG+  EAA + +++R+KG++  PACSWIEVK + HVF++ D+SH   + I   ++  
Sbjct: 487 YSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVF 546

Query: 605 MLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
             ++ + GYVP    +  D+ +EQ+  VL  HSEKLA+ FG+I+T   T ++++++ R+C
Sbjct: 547 SEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVC 606

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCH   K I+ + GREIV+RDA+RFHHFKDG+CSCGD+W
Sbjct: 607 VDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 148/299 (49%), Gaps = 3/299 (1%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R+ EAL L   + +  G    S T  +++        +R    +  +    GF  D+++ 
Sbjct: 153 RHGEALGLVREM-WRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVG 211

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           + ++ M+  C     + ++FD +P R+ +  N ++AG   +G   EA  LF  +      
Sbjct: 212 SSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIK 271

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               TF+++I A   L  + +GKQLH+  ++ GF  NVF+S +LIDMY KCG++  A+ +
Sbjct: 272 PMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRI 331

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD +     V W  +I G+ALHG + EAL L+  M    +K +H TF  ++  C+    +
Sbjct: 332 FDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLV 391

Query: 349 EHAKQAHAGLVRH-GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WNALI 405
           +   +    +  H G    +  ++AL D   + G++E+A +    M  K   S W+ L+
Sbjct: 392 DKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLL 450



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 97/206 (47%), Gaps = 3/206 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N    EAL LF  +    G      T+ +LI AC  L S+   K++ +Y++  GF+ +++
Sbjct: 252 NGSVDEALGLFRRM-LHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVF 310

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + + ++ M+ +CG +  ARR+FD +   ++VS   +I G    G   EA +LF  +    
Sbjct: 311 ISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGN 370

Query: 227 SDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                 TF  ++ A +   L+  G K  +S +   G   ++    AL D   + G +E+A
Sbjct: 371 LKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEA 430

Query: 286 QGVFDEMSEKTTVG-WNTIIAGYALH 310
                 M  K T   W+T++    +H
Sbjct: 431 YNFISGMKIKPTASVWSTLLRACKVH 456



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 104/257 (40%), Gaps = 22/257 (8%)

Query: 300 WNTIIAGYALHGYSEEALDLYYEMR--DSGVKMDHFTFSM--IIRICTRLASLEHAKQAH 355
           W   I   A  G    A+ L+  MR  D          S+   ++ C  L         H
Sbjct: 22  WAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASLH 81

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGR--------------IEDARHVFDKMLCKNVISW 401
           A  +R G   D  A +AL++ Y K                 +E  R VFD+M  K+V+SW
Sbjct: 82  ALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSW 141

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           N L+ G    GR  EA+ L  +M  +G +P+  T  +VL   +      RG E+    +R
Sbjct: 142 NTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATR 201

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--L 519
           +          + +I++       D +  +    P +    +W ++L  C  NG+++  L
Sbjct: 202 N-GFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAI-LWNSMLAGCAQNGSVDEAL 259

Query: 520 GKFAAEKLYGMEPEKLS 536
           G F      G++P  ++
Sbjct: 260 GLFRRMLHSGIKPMPVT 276


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/565 (38%), Positives = 355/565 (62%), Gaps = 3/565 (0%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGF-EPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           Y  L+  C  L  + + + V ++++ + F +  L ++N ++ M+ +CG + DARR+FDEM
Sbjct: 90  YSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P +++V+   +IAG   +    +A LLF  +          T +++++AS     +  G 
Sbjct: 150 PTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGT 209

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           QLH+  LK G+  +V+V  AL+DMY++CG ++ AQ  FD M  K+ V WN +I+G+A  G
Sbjct: 210 QLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKG 269

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             E AL L ++M+    +  HFT+S ++  C  + +LE  K  HA +++ G  L     +
Sbjct: 270 EGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGN 329

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
            L+D Y+K G I+DA+ VFD+++  +V+SWN ++ G   HG G+E ++ FEQML  G+ P
Sbjct: 330 TLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEP 389

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           N ++FL VL+ACS SGL + G   F+ M + +K++P   HY   ++LLGR GLLD A   
Sbjct: 390 NEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLLDRAERF 448

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           IR  P + T  +W ALL ACR++ N+ELG +AAE+ + ++P      ++L NIY S+G+ 
Sbjct: 449 IREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRW 508

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
           ++ A+V + ++  G++  PACSW+E++   H+F++ D++H + KEI  K + +  +I + 
Sbjct: 509 RDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGKWEEISGKIKEI 568

Query: 612 GYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           GYVP+   +L  VD+QE +  L YHSEKLA+AF L+NT   +P++I ++ R+C DCH AI
Sbjct: 569 GYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAI 628

Query: 671 KLIAMVTGREIVVRDASRFHHFKDG 695
           K ++ V  REI+VRD +RFH F+DG
Sbjct: 629 KFVSKVVDREIIVRDTNRFHRFRDG 653



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 149/313 (47%), Gaps = 2/313 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N R R+AL LF  +    GF     T  +L+ A      +    ++ ++ L  G++  +Y
Sbjct: 167 NNRPRDALLLFPQM-LRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVY 225

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + + ++ M+ RCG M  A+  FD MP ++ VS N +I+G    G+   A  L   +  + 
Sbjct: 226 VGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKN 285

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 T+++++ A A +  +  GK +H+  +K G     F+   L+DMY+K GSI+DA+
Sbjct: 286 FQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAK 345

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VFD + +   V WNT++ G A HG  +E LD + +M   G++ +  +F  ++  C+   
Sbjct: 346 RVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSG 405

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WNALI 405
            L+        + ++    D+      VD   + G ++ A     +M  +   + W AL+
Sbjct: 406 LLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALL 465

Query: 406 AGYGNHGRGEEAV 418
                H   E  V
Sbjct: 466 GACRMHKNMELGV 478



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 133/260 (51%), Gaps = 15/260 (5%)

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD--IVANSAL 373
           ALDL   ++   +  D+  +S +++ CTRL  +E  +  HA LV   F LD  +V  + +
Sbjct: 74  ALDL---IQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHF-LDNHLVLQNII 129

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           V+ Y+K G ++DAR +FD+M  K++++W ALIAG+  + R  +A+ LF QML  G +PNH
Sbjct: 130 VNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNH 189

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
            T  ++L A       + G ++  +    +  +      + ++++  R G +D A     
Sbjct: 190 FTLSSLLKASGSEHGLDPGTQL-HAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFD 248

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS----NYVVLLNIYNSSG 549
           G P K+  + W AL++     G    G+ A   L+ M+ +        Y  +L+   S G
Sbjct: 249 GMPTKSEVS-WNALISGHARKGE---GEHALHLLWKMQRKNFQPTHFTYSSVLSACASIG 304

Query: 550 KLKEAAEVIRTLRRKGLRML 569
            L++   V   + + GL+++
Sbjct: 305 ALEQGKWVHAHMIKSGLKLI 324



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 94/207 (45%), Gaps = 10/207 (4%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY +++SAC  + ++ + K V ++M+ +G +   ++ N +L M+ + G + DA+R+FD +
Sbjct: 292 TYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL 351

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            + ++VS N ++ G    G   E    F  +     +    +F  ++ A +   L+  G 
Sbjct: 352 VKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGL 411

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALH 310
                  K     +V      +D+  + G ++ A+    EM  E T   W  ++    +H
Sbjct: 412 YYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMH 471

Query: 311 G-------YSEEALDLYYEMRDSGVKM 330
                    +E A +L  +  DSG +M
Sbjct: 472 KNMELGVYAAERAFEL--DPHDSGPRM 496


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 364/602 (60%), Gaps = 11/602 (1%)

Query: 112  EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
            EAL  F  L  + G     S++   I +C  L  +   +         GFE DL++ + +
Sbjct: 1998 EALRAFSSLR-KLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSAL 2056

Query: 172  LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC-- 229
            + M+ +CG + DAR LFDE+P RN+VS   +I G + +     A LLF D  EE ++   
Sbjct: 2057 IDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVED 2116

Query: 230  ------GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
                   S    +++ A + +    + + +H   +K GF  ++ V   L+D Y+KCG   
Sbjct: 2117 GNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPL 2176

Query: 284  DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRIC 342
             ++ VFD M EK  + WN++IA YA  G S EAL++++ M R  GV+ +  T S ++  C
Sbjct: 2177 VSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLAC 2236

Query: 343  TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
                +L   K  H  +++     ++   ++++D Y K GR+E A+  FD+M  KNV SW 
Sbjct: 2237 AHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWT 2296

Query: 403  ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
            A++AGYG HGR +EA+++F +M+  G++PN++TF++VL+ACS +GL E GW  F +M   
Sbjct: 2297 AMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHK 2356

Query: 463  HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
            + I+P   HY CM++L GR G L+EA+ LI+    K    +W +LL ACR++ N++LG+ 
Sbjct: 2357 YDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEI 2416

Query: 523  AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPH 582
            AA+KL+ ++P+    YV+L N+Y  +G+  +   +   ++ + L   P  S +E+K + H
Sbjct: 2417 AAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVH 2476

Query: 583  VFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAV 641
            VFL GD+ H   + IY+ ++++ LE+ K GYVP   ++L DVDE+E+  +L  HSEKLAV
Sbjct: 2477 VFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAV 2536

Query: 642  AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
            AFG++N++  T + I+++ R+C DCH  IKLI+ +  R+ VVRD+ RFHHFKDG+CSCGD
Sbjct: 2537 AFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGD 2596

Query: 702  YW 703
            YW
Sbjct: 2597 YW 2598



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 184/377 (48%), Gaps = 31/377 (8%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           ++ + ++++ + ++ +G   D  +  +++ ++   G +  A  LF ++      + N+II
Sbjct: 38  KNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLII 97

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
                +G   +A +L+ ++  +       TF  +I+A      I +GK +H   +K GF 
Sbjct: 98  RANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFS 157

Query: 264 DNVFVSCALIDMYSKCG-------------------------------SIEDAQGVFDEM 292
            +VFV   LID Y KCG                                +++A+ +FDE+
Sbjct: 158 GDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEI 217

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
             K  V W  +I GY  +   EEAL+L+  M+   +  + +T   +I+ CT +  L   +
Sbjct: 218 PSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGR 277

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
             H   +++   + +   +AL+D YSK G I+DA  VF+ M  K++ +WN++I   G HG
Sbjct: 278 GIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHG 337

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
            G+EA+ LF +M    ++P+ +TF+ VL AC      + G   F  M++ + I P   HY
Sbjct: 338 LGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHY 397

Query: 473 ACMIELLGREGLLDEAF 489
            CM EL  R   LDEAF
Sbjct: 398 ECMTELYARSNNLDEAF 414



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 200/427 (46%), Gaps = 48/427 (11%)

Query: 184  ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
            A   +  + + N+ S N +IA +   GD +EA   F  L +        +F   I++ + 
Sbjct: 1968 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 2027

Query: 244  LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
            L  +  G+  H  A   GF  ++FVS ALIDMYSKCG ++DA+ +FDE+  +  V W ++
Sbjct: 2028 LCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSM 2087

Query: 304  IAGYALHGYSEEALDLY-------YEMRD-SGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
            I GY  +  ++ AL L+        E+ D + V +D      ++  C+R++     +  H
Sbjct: 2088 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVH 2147

Query: 356  AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
              +V+ GF   I   + L+D Y+K G+   ++ VFD M  K+ ISWN++IA Y   G   
Sbjct: 2148 GFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 2207

Query: 416  EAVELFEQMLLN-GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR------------- 461
            EA+E+F  M+ + G+R N VT  AVL AC+ +G    G  I   + +             
Sbjct: 2208 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSI 2267

Query: 462  -----------------DHKIKPRAMHYACMIELLGREGLLDEA----FALIRGAPFKTT 500
                             D   +     +  M+   G  G   EA    + ++R A  K  
Sbjct: 2268 IDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVR-AGVKPN 2326

Query: 501  KNMWAALLTACRVNGNLELGKF---AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
               + ++L AC   G +E G     A +  Y +EP  + +Y  +++++  +G L EA  +
Sbjct: 2327 YITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEP-GIEHYGCMVDLFGRAGCLNEAYNL 2385

Query: 558  IRTLRRK 564
            I+ ++ K
Sbjct: 2386 IKRMKMK 2392



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 169/353 (47%), Gaps = 41/353 (11%)

Query: 99   SQIEKLVLNKRYREALELF-----EILEFEGGFDV--GSSTYDALISACIGLRSIREVKR 151
            S I   V N++   AL LF     E  E E G +V   S    +++SAC  +      + 
Sbjct: 2086 SMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG 2145

Query: 152  VFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGD 211
            V  +++  GF+  + + N ++  + +CG  + ++++FD M E++ +S N +IA    SG 
Sbjct: 2146 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGL 2205

Query: 212  YLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC 270
              EA  +F  +         + T + ++ A A    +  GK +H   +KM    NV V  
Sbjct: 2206 SGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGT 2265

Query: 271  ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
            ++IDMY KCG +E A+  FD M EK    W  ++AGY +HG ++EALD++Y+M  +GVK 
Sbjct: 2266 SIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKP 2325

Query: 331  DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
            ++ TF  ++  C+           HAGLV  G                 W      +H +
Sbjct: 2326 NYITFVSVLAACS-----------HAGLVEEG-----------------WHWFNAMKHKY 2357

Query: 391  DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
            D  +   +  +  ++  +G  G   EA  L ++M    M+P+ V + ++L AC
Sbjct: 2358 D--IEPGIEHYGCMVDLFGRAGCLNEAYNLIKRM---KMKPDFVVWGSLLGAC 2405



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 158/335 (47%), Gaps = 42/335 (12%)

Query: 238 IRASAGLELISVGK------QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           IRA   L L+   K      Q+H+  ++ G  ++  ++  LI +YS  G I  A  +F +
Sbjct: 25  IRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQ 84

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           +    T  WN II    ++G SE+AL LY  M   G+  D FTF  +I+ CT   S++  
Sbjct: 85  IQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG 144

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K  H  L+++GF  D+   + L+DFY K G    A  VF+KM  +NV+SW  +I+G  + 
Sbjct: 145 KVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISC 204

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G  +EA  +F+++       N V++ A+++   R+   E   E+F+ M  ++ I P    
Sbjct: 205 GDLQEARRIFDEI----PSKNVVSWTAMINGYIRNQQPEEALELFKRMQAEN-IFPNEYT 259

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
              +I+     G+L     L RG      KN              +E+G +         
Sbjct: 260 MVSLIKACTEMGIL----TLGRGIHDYAIKNC-------------IEIGVYLG------- 295

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
                    L+++Y+  G +K+A EV  T+ RK L
Sbjct: 296 -------TALIDMYSKCGSIKDAIEVFETMPRKSL 323



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 155/315 (49%), Gaps = 35/315 (11%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
            +N    +AL L++ +  +G       T+  +I AC    SI   K V   ++  GF  D
Sbjct: 101 TINGLSEQALMLYKNMVCQG-IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGD 159

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL-- 222
           ++++N ++  + +CG    A ++F++M  RN+VS   +I+G+I  GD  EA  +F ++  
Sbjct: 160 VFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPS 219

Query: 223 -----W-------------EEFSDCGSR-----------TFATMIRASAGLELISVGKQL 253
                W             EE  +   R           T  ++I+A   + ++++G+ +
Sbjct: 220 KNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI 279

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           H  A+K      V++  ALIDMYSKCGSI+DA  VF+ M  K+   WN++I    +HG  
Sbjct: 280 HDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLG 339

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN--S 371
           +EAL+L+ EM    VK D  TF  ++  C  + +++        + +H +G+  +     
Sbjct: 340 QEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQH-YGIAPIPEHYE 398

Query: 372 ALVDFYSKWGRIEDA 386
            + + Y++   +++A
Sbjct: 399 CMTELYARSNNLDEA 413



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 4/133 (3%)

Query: 93  PSAGICS---QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV 149
           PS  + S    I   + N++  EALELF+ ++ E  F     T  +LI AC  +  +   
Sbjct: 218 PSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFP-NEYTMVSLIKACTEMGILTLG 276

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           + +  Y +    E  +Y+   ++ M+ +CG + DA  +F+ MP ++L + N +I  +   
Sbjct: 277 RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVH 336

Query: 210 GDYLEAFLLFLDL 222
           G   EA  LF ++
Sbjct: 337 GLGQEALNLFSEM 349


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 245/674 (36%), Positives = 390/674 (57%), Gaps = 21/674 (3%)

Query: 45  LDKRKWKRSFQRVECCLMEQGLKPRPKPNKIYTEELKESS---LPDT---------QMKK 92
           L++ K  R    +   L++  L  +PK      E L ES+   LP +         Q+ +
Sbjct: 31  LEQCKTIRDLNEIHAHLIKTRLLLKPK----VAENLLESAAILLPTSMDYAVSIFRQIDE 86

Query: 93  P-SAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKR 151
           P S      I    L +   EA+ LF+ +  E        T+  ++  C  L+++ E ++
Sbjct: 87  PDSPAYNIMIRGFTLKQSPHEAILLFKEMH-ENSVQPDEFTFPCILKVCSRLQALSEGEQ 145

Query: 152 VFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGD 211
           + + ++  GF    +++N ++ M+  CG +  ARR+FDEM ERN+ + N + AG   SG+
Sbjct: 146 IHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGN 205

Query: 212 YLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCA 271
           + E   LF ++ E        T  +++ A   L  + +G+ ++    + G   N  +  +
Sbjct: 206 WEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITS 265

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
           L+DMY+KCG ++ A+ +FD+M  +  V W+ +I+GY+      EALDL++EM+ + +  +
Sbjct: 266 LVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPN 325

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
             T   I+  C  L +LE  K  H  + +    L +   +AL+DFY+K G +E +  VF 
Sbjct: 326 EITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFG 385

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
           KM  KNV+SW  LI G  ++G+G++A+E F  ML   + PN VTF+ VLSACS +GL + 
Sbjct: 386 KMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDE 445

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
           G ++F SMSRD  I+PR  HY CM+++LGR GL++EAF  I+  P +    +W  LL +C
Sbjct: 446 GRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASC 505

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           +V+ N+E+G+ + ++L  +EP    +Y++L NIY S G+ ++A +V   ++ KG++  P 
Sbjct: 506 KVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPG 565

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPE--EKTLLPDVDEQEQ 629
           CS IE+    H F + D  H Q++EIY  ++ MM +I   GYVP   E  L  + D++E 
Sbjct: 566 CSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKES 625

Query: 630 RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRF 689
            V S+HSEKLA+AFGLI +   T ++I ++ R+C DCHNA KL++ V  REIVVRD +RF
Sbjct: 626 SV-SHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRF 684

Query: 690 HHFKDGMCSCGDYW 703
           HHFK+G CSC DYW
Sbjct: 685 HHFKEGSCSCNDYW 698


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/603 (38%), Positives = 370/603 (61%), Gaps = 13/603 (2%)

Query: 111 REALELFEILEFE-GGFDVGSSTYDALISACI--GLRSIREVKRVFSYMLSTGFEPDLYM 167
           +EA +LF   EF   G      +   +++ C+  G   +   K+V    + +G + D+ +
Sbjct: 266 KEAFQLFS--EFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSV 323

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE-- 225
            N ++ M+ + G    AR +F++M   +L+S N +I+    S    E+  LF+DL  E  
Sbjct: 324 ANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGL 383

Query: 226 ----FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
               F+   S T AT  +A   L L+  GKQ+H+ A+K GF  ++ V+  ++DMY KCG 
Sbjct: 384 KPDHFT-LASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGD 442

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           + +A  VF+ +S    V W ++I+G   +G  ++AL +Y+ MR S V  D +TF+ +I+ 
Sbjct: 443 MVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKA 502

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
            + + +LE  +Q HA +++     D    ++LVD Y+K G IEDA  +F KM  +N+  W
Sbjct: 503 SSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALW 562

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           NA++ G   HG  EEAV LF+ M  +G+ P+ V+F+ +LSACS +GL+   +E   SM  
Sbjct: 563 NAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPN 622

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           D+ I+P   HY+C+++ LGR GL+ EA  +I   PFK + ++  ALL ACR+ G++E GK
Sbjct: 623 DYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGK 682

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
             A +L+ +EP   + YV+L NIY ++ +  +  +  + ++RK ++  P  SWI+VK   
Sbjct: 683 RVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNML 742

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLA 640
           H+F+  D+SH Q   IY KV+ MM  I + GYVP+ + +L DV DE+++R L YHSEKLA
Sbjct: 743 HLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLA 802

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +A+GLI+T   T ++++++ R+C DCHNAIK I+ V  REIV+RDA+RFHHF+DG+CSCG
Sbjct: 803 IAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCG 862

Query: 701 DYW 703
           DYW
Sbjct: 863 DYW 865



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 169/321 (52%), Gaps = 18/321 (5%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           ST++ L+  C   R           ++ +G   D ++ N +L M+ +CG +  AR++FD 
Sbjct: 89  STHNLLLGKCTHAR-----------IVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDT 137

Query: 191 MPERNLVSCNMII---AGMIDS--GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
            PER+LV+ N I+   A  +DS  G+  E   LF  L          T A +++      
Sbjct: 138 TPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSG 197

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
            +   + +H  A+K+G   +VFVS AL+++YSKCG + DA+ +FD M E+  V WN ++ 
Sbjct: 198 CLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLK 257

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS--LEHAKQAHAGLVRHGF 363
           GY   G  +EA  L+ E   SG++ D F+  +I+  C    +  LE  KQ H   V+ G 
Sbjct: 258 GYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGL 317

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             D+   ++LV+ YSK G    AR VF+ M   ++ISWN++I+        EE+V LF  
Sbjct: 318 DSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFID 377

Query: 424 MLLNGMRPNHVTFLAVLSACS 444
           +L  G++P+H T  ++  A +
Sbjct: 378 LLHEGLKPDHFTLASITLATA 398



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 116/219 (52%), Gaps = 5/219 (2%)

Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
           ++R +     + +GK  H+  +  G   + F+S  L+ MYSKCGS+  A+ VFD   E+ 
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 297 TVGWNTIIAGYAL-----HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
            V WN I+  YA       G ++E L L+  +R S       T + ++++C     L  A
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 202

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           +  H   ++ G   D+  + ALV+ YSK GR+ DAR +FD M  ++V+ WN ++ GY   
Sbjct: 203 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 262

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
           G  +EA +LF +   +G+RP+  +   +L+ C  +G  +
Sbjct: 263 GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDD 301


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 220/596 (36%), Positives = 359/596 (60%), Gaps = 3/596 (0%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R  EA   F  +  E G +    T+ +++ AC    ++++ +++   ++  G+  D  +R
Sbjct: 387 RMEEAFLFFNKM-IESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR 445

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
             +L M+ +CG ++DAR +F+ + ++N+V+ N +I   +    Y  A   F  L +E   
Sbjct: 446 TALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIK 505

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
             S TF +++      + + +GK + S  ++ GF  ++ +  AL+ M+  CG +  A  +
Sbjct: 506 PDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNL 565

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F++M E+  V WNTIIAG+  HG ++ A D +  M++SGVK D  TF+ ++  C    +L
Sbjct: 566 FNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEAL 625

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
              ++ HA +       D+V  + L+  Y+K G I+DA  VF  +  KNV SW ++I GY
Sbjct: 626 TEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGY 685

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
             HGRG+EA+ELF QM   G++P+ +TF+  LSAC+ +GL + G   F+SM +D  I+PR
Sbjct: 686 AQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESM-KDFNIEPR 744

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
             HY CM++L GR GLL EA   I     K    +W ALL AC+V+ ++EL +  A+K  
Sbjct: 745 MEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKL 804

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
            ++P     YV+L NIY ++G  KE  ++ + +  +G+   P  SWIEV  + H+F S D
Sbjct: 805 ELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFCSDD 864

Query: 589 QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLIN 647
           ++H Q +EI+ ++ R+ +E+ K GYVP+ + +L DV D +++  L +HSE+LA+A+GL+ 
Sbjct: 865 KTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERLAIAYGLLK 924

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T   TP+ I ++ R+C DCH A KLI+ +T R+I+ RD++RFHHFKDG+CSCGD+W
Sbjct: 925 TPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 131/437 (29%), Positives = 236/437 (54%), Gaps = 5/437 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY +L+  CI  +++ + +R+ +++  +  +PD++M N ++ M+ +CG    A+++FDEM
Sbjct: 106 TYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEM 165

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P++++ S N+++ G +    Y EAF L   + ++       TF  M+ A A  + +  G 
Sbjct: 166 PDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGG 225

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           +L S  L  G+  ++FV  ALI+M+ KCG ++DA  VF+ +  +  + W ++I G A H 
Sbjct: 226 ELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHR 285

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             ++A +L+  M + GV+ D   F  +++ C    +LE  K+ HA +   G   +I   +
Sbjct: 286 QFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGT 345

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           AL+  Y+K G +EDA  VF+ +  +NV+SW A+IAG+  HGR EEA   F +M+ +G+ P
Sbjct: 346 ALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEP 405

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           N VTF+++L ACSR    ++G +I   + +   I    +  A ++ +  + G L +A  +
Sbjct: 406 NRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTA-LLSMYAKCGSLMDARNV 464

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549
                 K     W A++TA   +   +  +  F A    G++P+  S +  +LN+  S  
Sbjct: 465 FERIS-KQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDS-STFTSILNVCKSPD 522

Query: 550 KLKEAAEVIRTLRRKGL 566
            L+    V   + R G 
Sbjct: 523 ALELGKWVQSLIIRAGF 539



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 188/377 (49%), Gaps = 11/377 (2%)

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL 253
           +N    N  +  +  +G   EA L+ L +         +T++++++     + +  G+++
Sbjct: 67  KNTQRANAFLNRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERI 126

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           H+         ++F+   LI MY+KCG+   A+ +FDEM +K    WN ++ GY  H   
Sbjct: 127 HNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRY 186

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
           EEA  L+ +M   GVK D +TF  ++  C    +++   +  + ++  G+  D+   +AL
Sbjct: 187 EEAFRLHEQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTAL 246

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           ++ + K G ++DA  VF+ +  +++I+W ++I G   H + ++A  LF+ M   G++P+ 
Sbjct: 247 INMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDK 306

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA---FA 490
           V F+++L AC+     E+G  +   M ++  +         ++ +  + G +++A   F 
Sbjct: 307 VAFVSLLKACNHPEALEQGKRVHARM-KEVGLDTEIYVGTALLSMYTKCGSMEDALEVFN 365

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY--GMEPEKLSNYVVLLNIYNSS 548
           L++G    +    W A++     +G +E       K+   G+EP +++ ++ +L   +  
Sbjct: 366 LVKGRNVVS----WTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVT-FMSILGACSRP 420

Query: 549 GKLKEAAEVIRTLRRKG 565
             LK+  ++   + + G
Sbjct: 421 SALKQGRQIHDRIIKAG 437


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 364/602 (60%), Gaps = 11/602 (1%)

Query: 112  EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
            EAL  F  L  + G     S++   I +C  L  +   +         GFE DL++ + +
Sbjct: 1125 EALRAFSSLR-KLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSAL 1183

Query: 172  LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC-- 229
            + M+ +CG + DAR LFDE+P RN+VS   +I G + +     A LLF D  EE ++   
Sbjct: 1184 IDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVED 1243

Query: 230  ------GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
                   S    +++ A + +    + + +H   +K GF  ++ V   L+D Y+KCG   
Sbjct: 1244 GNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPL 1303

Query: 284  DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRIC 342
             ++ VFD M EK  + WN++IA YA  G S EAL++++ M R  GV+ +  T S ++  C
Sbjct: 1304 VSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLAC 1363

Query: 343  TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
                +L   K  H  +++     ++   ++++D Y K GR+E A+  FD+M  KNV SW 
Sbjct: 1364 AHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWT 1423

Query: 403  ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
            A++AGYG HGR +EA+++F +M+  G++PN++TF++VL+ACS +GL E GW  F +M   
Sbjct: 1424 AMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHK 1483

Query: 463  HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
            + I+P   HY CM++L GR G L+EA+ LI+    K    +W +LL ACR++ N++LG+ 
Sbjct: 1484 YDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEI 1543

Query: 523  AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPH 582
            AA+KL+ ++P+    YV+L N+Y  +G+  +   +   ++ + L   P  S +E+K + H
Sbjct: 1544 AAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVH 1603

Query: 583  VFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAV 641
            VFL GD+ H   + IY+ ++++ LE+ K GYVP   ++L DVDE+E+  +L  HSEKLAV
Sbjct: 1604 VFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAV 1663

Query: 642  AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
            AFG++N++  T + I+++ R+C DCH  IKLI+ +  R+ VVRD+ RFHHFKDG+CSCGD
Sbjct: 1664 AFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGD 1723

Query: 702  YW 703
            YW
Sbjct: 1724 YW 1725



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 184/377 (48%), Gaps = 31/377 (8%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           ++ + ++++ + ++ +G   D  +  +++ ++   G +  A  LF ++      + N+II
Sbjct: 38  KNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLII 97

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
                +G   +A +L+ ++  +       TF  +I+A      I +GK +H   +K GF 
Sbjct: 98  RANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFS 157

Query: 264 DNVFVSCALIDMYSKCG-------------------------------SIEDAQGVFDEM 292
            +VFV   LID Y KCG                                +++A+ +FDE+
Sbjct: 158 GDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEI 217

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
             K  V W  +I GY  +   EEAL+L+  M+   +  + +T   +I+ CT +  L   +
Sbjct: 218 PSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGR 277

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
             H   +++   + +   +AL+D YSK G I+DA  VF+ M  K++ +WN++I   G HG
Sbjct: 278 GIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHG 337

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
            G+EA+ LF +M    ++P+ +TF+ VL AC      + G   F  M++ + I P   HY
Sbjct: 338 LGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHY 397

Query: 473 ACMIELLGREGLLDEAF 489
            CM EL  R   LDEAF
Sbjct: 398 ECMTELYARSNNLDEAF 414



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 200/427 (46%), Gaps = 48/427 (11%)

Query: 184  ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
            A   +  + + N+ S N +IA +   GD +EA   F  L +        +F   I++ + 
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 1154

Query: 244  LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
            L  +  G+  H  A   GF  ++FVS ALIDMYSKCG ++DA+ +FDE+  +  V W ++
Sbjct: 1155 LCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSM 1214

Query: 304  IAGYALHGYSEEALDLY-------YEMRD-SGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
            I GY  +  ++ AL L+        E+ D + V +D      ++  C+R++     +  H
Sbjct: 1215 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVH 1274

Query: 356  AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
              +V+ GF   I   + L+D Y+K G+   ++ VFD M  K+ ISWN++IA Y   G   
Sbjct: 1275 GFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 1334

Query: 416  EAVELFEQMLLN-GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR------------- 461
            EA+E+F  M+ + G+R N VT  AVL AC+ +G    G  I   + +             
Sbjct: 1335 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSI 1394

Query: 462  -----------------DHKIKPRAMHYACMIELLGREGLLDEA----FALIRGAPFKTT 500
                             D   +     +  M+   G  G   EA    + ++R A  K  
Sbjct: 1395 IDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVR-AGVKPN 1453

Query: 501  KNMWAALLTACRVNGNLELGKF---AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
               + ++L AC   G +E G     A +  Y +EP  + +Y  +++++  +G L EA  +
Sbjct: 1454 YITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEP-GIEHYGCMVDLFGRAGCLNEAYNL 1512

Query: 558  IRTLRRK 564
            I+ ++ K
Sbjct: 1513 IKRMKMK 1519



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 169/353 (47%), Gaps = 41/353 (11%)

Query: 99   SQIEKLVLNKRYREALELF-----EILEFEGGFDV--GSSTYDALISACIGLRSIREVKR 151
            S I   V N++   AL LF     E  E E G +V   S    +++SAC  +      + 
Sbjct: 1213 SMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG 1272

Query: 152  VFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGD 211
            V  +++  GF+  + + N ++  + +CG  + ++++FD M E++ +S N +IA    SG 
Sbjct: 1273 VHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGL 1332

Query: 212  YLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC 270
              EA  +F  +         + T + ++ A A    +  GK +H   +KM    NV V  
Sbjct: 1333 SGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGT 1392

Query: 271  ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
            ++IDMY KCG +E A+  FD M EK    W  ++AGY +HG ++EALD++Y+M  +GVK 
Sbjct: 1393 SIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKP 1452

Query: 331  DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
            ++ TF  ++  C+           HAGLV  G                 W      +H +
Sbjct: 1453 NYITFVSVLAACS-----------HAGLVEEG-----------------WHWFNAMKHKY 1484

Query: 391  DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
            D  +   +  +  ++  +G  G   EA  L ++M    M+P+ V + ++L AC
Sbjct: 1485 D--IEPGIEHYGCMVDLFGRAGCLNEAYNLIKRM---KMKPDFVVWGSLLGAC 1532



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 152/316 (48%), Gaps = 36/316 (11%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           +Q+H+  ++ G  ++  ++  LI +YS  G I  A  +F ++    T  WN II    ++
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G SE+AL LY  M   G+  D FTF  +I+ CT   S++  K  H  L+++GF  D+   
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQ 163

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           + L+DFY K G    A  VF+KM  +NV+SW  +I+G  + G  +EA  +F+++      
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEI----PS 219

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
            N V++ A+++   R+   E   E+F+ M  ++ I P       +I+     G+L     
Sbjct: 220 KNVVSWTAMINGYIRNQQPEEALELFKRMQAEN-IFPNEYTMVSLIKACTEMGIL----T 274

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
           L RG      KN              +E+G +                  L+++Y+  G 
Sbjct: 275 LGRGIHDYAIKNC-------------IEIGVYLG--------------TALIDMYSKCGS 307

Query: 551 LKEAAEVIRTLRRKGL 566
           +K+A EV  T+ RK L
Sbjct: 308 IKDAIEVFETMPRKSL 323



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 156/319 (48%), Gaps = 35/319 (10%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I    +N    +AL L++ +  +G       T+  +I AC    SI   K V   ++  G
Sbjct: 97  IRANTINGLSEQALMLYKNMVCQG-IAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYG 155

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F  D++++N ++  + +CG    A ++F++M  RN+VS   +I+G+I  GD  EA  +F 
Sbjct: 156 FSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFD 215

Query: 221 DL-------W-------------EEFSDCGSR-----------TFATMIRASAGLELISV 249
           ++       W             EE  +   R           T  ++I+A   + ++++
Sbjct: 216 EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTL 275

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G+ +H  A+K      V++  ALIDMYSKCGSI+DA  VF+ M  K+   WN++I    +
Sbjct: 276 GRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGV 335

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           HG  +EAL+L+ EM    VK D  TF  ++  C  + +++        + +H +G+  + 
Sbjct: 336 HGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQH-YGIAPIP 394

Query: 370 N--SALVDFYSKWGRIEDA 386
                + + Y++   +++A
Sbjct: 395 EHYECMTELYARSNNLDEA 413



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 4/133 (3%)

Query: 93  PSAGICS---QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV 149
           PS  + S    I   + N++  EALELF+ ++ E  F     T  +LI AC  +  +   
Sbjct: 218 PSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFP-NEYTMVSLIKACTEMGILTLG 276

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           + +  Y +    E  +Y+   ++ M+ +CG + DA  +F+ MP ++L + N +I  +   
Sbjct: 277 RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVH 336

Query: 210 GDYLEAFLLFLDL 222
           G   EA  LF ++
Sbjct: 337 GLGQEALNLFSEM 349


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/598 (38%), Positives = 361/598 (60%), Gaps = 2/598 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N  + EALE F  +    GF   + T+  ++ AC+GL++    K V   +L T +E DLY
Sbjct: 125 NDCFSEALEFFSQMRV-AGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLY 183

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   +L ++ RCG   DA R F +MP+ +++  + +I+    SG   +A  +F  +   F
Sbjct: 184 VGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAF 243

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 TF+++++ASA +E + + K +H  ALK G   +VFVS AL+  Y+KCG IE + 
Sbjct: 244 VIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSM 303

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +F+ +S++  V WNTII  Y   G  E AL L+  M    V+    T+S I+R C  LA
Sbjct: 304 ELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLA 363

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           +LE   Q H    +  +G D+   +AL+D Y+K G I+DAR +FD +  ++ +SWNA+I 
Sbjct: 364 ALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIIC 423

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GY  HG G EA+++F  M     +P+ +TF+ VLSACS +G  + G + F SM +D+ I+
Sbjct: 424 GYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIE 483

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P   HY CM+ L+GR G LD+A   I   PF+ +  +W ALL AC ++ ++ELG+ +A++
Sbjct: 484 PCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQR 543

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           +  +EP   +++V+L NIY  + +    A V + ++RKG++  P  SWIE +   H F  
Sbjct: 544 VLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTV 603

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGL 645
            D SH   K I   ++ + ++  K GY P+   +L DV D++++R+L  HSE+LA+AFGL
Sbjct: 604 ADTSHADLKLINGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFGL 663

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +      P++I+++ RIC DCH+ IKLI+ + GR+I+VRD +RFHHF++G CSC DYW
Sbjct: 664 VRMPAGCPIRIIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/407 (29%), Positives = 203/407 (49%), Gaps = 44/407 (10%)

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           +FDEMPERN VS   +I G   S  ++EAF LF  L  E  +     F T+++    +E 
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
             +G+ +H C LK+G+G N F+  ALID YS  G +  A+ VFDE+S K  V W  +IA 
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           YA +    EAL+ + +MR +G K ++FTF+ +++ C  L + +  K  H  +++  +  D
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +     L++ Y++ G  +DA   F  M   +VI W+ +I+ +   G+ E+A+E+F QM  
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 427 NGMRPNHVTFLAVLSACS----------------RSGLS-------------------ER 451
             + PN  TF +VL A +                ++GLS                   E+
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQ 301

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
             E+F+++S  + +    +     ++L   E  L     ++R    + T+  ++++L AC
Sbjct: 302 SMELFEALSDRNDVSWNTI-IVSYVQLGDGERALSLFSNMLR-YQVQATEVTYSSILRAC 359

Query: 512 RVNGNLELGK----FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
                LELG       A+ +YG   + ++    L+++Y   G +K+A
Sbjct: 360 ATLAALELGLQVHCLTAKTIYG---QDVAVGNALIDMYAKCGSIKDA 403


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/580 (39%), Positives = 349/580 (60%), Gaps = 5/580 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           GF V +     L+     +  I + KRVF  M       ++ M N ++   +RC M+ +A
Sbjct: 170 GFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGK----NVVMYNTMITGLLRCKMVEEA 225

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           RRLF+ M +R+ ++   ++ G   +G   +A   F  +  +       TF +++ A   L
Sbjct: 226 RRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGAL 285

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             +  GKQ+H+  ++  + DNVFV  AL+DMYSKC SI+ A+  F  MS K  + W  +I
Sbjct: 286 SALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALI 345

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
            GY  +G SEEA+ ++ EM+  G+  D FT   +I  C  LASLE   Q H   +  G  
Sbjct: 346 VGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLM 405

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
             I  ++ALV  Y K G IEDA  +FD+ML  + +SW AL+ GY   GR +E ++LFE+M
Sbjct: 406 HYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKM 465

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
           L   ++P+ VTF+ VLSACSR+G  E+G   F SM +DH I P   HY CMI+L  R G 
Sbjct: 466 LAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGR 525

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L EA   I+  P       W  LL+ACR+ G++E+G++AAE L  ++P+  ++YV+L ++
Sbjct: 526 LKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSM 585

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           + + G   + A++ R +R + ++  P CSWI+ K + H+F + DQSH  +K IY K++ +
Sbjct: 586 HATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWL 645

Query: 605 MLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
             ++ + GY P+  ++L DV D  +  ++S+HSEKLA+AFGL+      P++IV++ R+C
Sbjct: 646 NSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRVC 705

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCHNA KLI+ +TGR+I+VRDA RFH F +G+CSCGD+W
Sbjct: 706 VDCHNATKLISKITGRDILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 148/476 (31%), Positives = 229/476 (48%), Gaps = 84/476 (17%)

Query: 162 EPDLYMRNRVL--LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
            P+L+  N +L  L H R  ++ D   LF  M +R+ VS N +IAG    G +  A  L+
Sbjct: 69  HPNLFTYNALLSTLAHAR--LLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLY 126

Query: 220 LDLWEEFSDC-GSR-TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
             L    S    SR T + M+ A++ L   ++G+Q H   L++GFG N FV   L+ MY+
Sbjct: 127 HTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYA 186

Query: 278 KCGSIEDAQGVFDEMSEKTTV-------------------------------GWNTIIAG 306
           K G I DA+ VFDEM  K  V                                W T++ G
Sbjct: 187 KMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTG 246

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           +  +G   +AL+ +  MR  G+ +D +TF  I+  C  L++LE  KQ HA ++R  +  +
Sbjct: 247 FTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDN 306

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +   SALVD YSK   I+ A   F +M CKN+ISW ALI GYG +G  EEAV +F +M  
Sbjct: 307 VFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQR 366

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA----CMIELLGRE 482
           +G+ P+  T  +V+S+C+     E G + F  ++    +    MHY      ++ L G+ 
Sbjct: 367 DGIDPDDFTLGSVISSCANLASLEEGAQ-FHCLA----LVSGLMHYITVSNALVTLYGKC 421

Query: 483 GLLDEAF---------------ALIRG-APFKTTKN------------------MWAALL 508
           G +++A                AL+ G A F   K                    +  +L
Sbjct: 422 GSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVL 481

Query: 509 TACRVNGNLELG---KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           +AC   G +E G     + +K +G+ P    +Y  ++++Y+ SG+LKEA E I+ +
Sbjct: 482 SACSRAGFVEKGCSYFHSMQKDHGIVPID-DHYTCMIDLYSRSGRLKEAEEFIKQM 536


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/617 (38%), Positives = 377/617 (61%), Gaps = 3/617 (0%)

Query: 89  QMKKPSAGIC-SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
           Q+K+P+  +  + I  LV N  + +A+E + ++  EG F   + T+  ++ AC  L  ++
Sbjct: 71  QIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEG-FLPNNFTFPFVLKACARLLDLQ 129

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
              ++ + ++  GF+ D++++  ++ ++ +CG + DA ++FD++P++N+VS   II+G I
Sbjct: 130 LGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYI 189

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
             G + EA  +F  L E      S T   ++ A   L  ++ G+ +H C ++MG   NVF
Sbjct: 190 GVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVF 249

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
           V  +L+DMY+KCG++E A+ VFD M EK  V W  +I GYAL+G  +EA+DL+ +M+   
Sbjct: 250 VGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQREN 309

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           VK D +T   ++  C RL +LE  +     + R+ F  + V  +AL+D Y+K G +  A 
Sbjct: 310 VKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAW 369

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
            VF  M  K+ + WNA+I+G   +G  + +  LF Q+   G++P+  TF+ +L  C+ +G
Sbjct: 370 EVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAG 429

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
           L + G   F SM R   + P   HY CM++LLGR GLLDEA  LIR  P +    +W AL
Sbjct: 430 LVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGAL 489

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           L ACR++ + +L + A ++L  +EP    NYV+L NIY+++ K  EAA+V  ++  K ++
Sbjct: 490 LGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQ 549

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ 627
             P CSWIEV    H FL GD+ H  +++IY K+D +  ++   GYVP    +L D++E+
Sbjct: 550 KPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEE 609

Query: 628 E-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
           E +  L  HSEKLA+AFGLI+ +    +++V++ R+C DCH AIKLI+ +TGREI VRD 
Sbjct: 610 EKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDN 669

Query: 687 SRFHHFKDGMCSCGDYW 703
           +RFH F++G CSC DYW
Sbjct: 670 NRFHCFREGSCSCNDYW 686



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 132/248 (53%), Gaps = 5/248 (2%)

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           +F ++ +     WNT+I G   +   ++A++ Y  MR  G   ++FTF  +++ C RL  
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           L+   + H  +V+ GF  D+   ++LV  Y+K G +EDA  VFD +  KNV+SW A+I+G
Sbjct: 128 LQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISG 187

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           Y   G+  EA+++F ++L   + P+  T + VLSAC++ G    G  I + +     ++ 
Sbjct: 188 YIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVR- 246

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
                  ++++  + G +++A ++  G P K   + W A++    +NG   L K A +  
Sbjct: 247 NVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVS-WGAMIQGYALNG---LPKEAIDLF 302

Query: 528 YGMEPEKL 535
             M+ E +
Sbjct: 303 LQMQRENV 310



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 7/137 (5%)

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
            R +F ++   N+  WN +I G  ++   ++A+E +  M   G  PN+ TF  VL AC+R
Sbjct: 65  TRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACAR 124

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
               + G +I  ++               ++ L  + G L++A  +    P K   + W 
Sbjct: 125 LLDLQLGVKI-HTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVS-WT 182

Query: 506 ALLTACRVNGNLELGKF 522
           A+     ++G + +GKF
Sbjct: 183 AI-----ISGYIGVGKF 194


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/658 (35%), Positives = 391/658 (59%), Gaps = 10/658 (1%)

Query: 55  QRVECCLMEQGLKP-RPKPNKIYTEELKESSLPDTQM------KKPSAGICSQIEKLVLN 107
           + V   +++ G++P R   N + +   K  SL D +        +      + IE  V  
Sbjct: 67  REVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAG 126

Query: 108 KRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
            +  EA + +E ++   G      T+ +L++A      ++  ++V   ++  G E +  +
Sbjct: 127 NKNLEAFKCYETMKL-AGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRV 185

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
              ++ M+ +CG +  AR +FD +PE+N+V+  ++IAG    G    A  L   + +   
Sbjct: 186 GTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEV 245

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
                TFA++++       +  GK++H   ++ G+G  ++V  +LI MY KCG +E+A+ 
Sbjct: 246 APNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARK 305

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           +F ++  +  V W  ++ GYA  G+ +EA++L+  M+  G+K D  TF+ ++  C+  A 
Sbjct: 306 LFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAF 365

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           L+  K+ H  LV  G+ LD+   SALV  Y+K G ++DA  VF++M  +NV++W A+I G
Sbjct: 366 LQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITG 425

Query: 408 Y-GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
               HGR  EA+E F+QM   G++P+ VTF +VLSAC+  GL E G + F+SM  D+ IK
Sbjct: 426 CCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIK 485

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P   HY+C ++LLGR G L+EA  +I   PF    ++W ALL+ACRV+ ++E G+ AAE 
Sbjct: 486 PMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAEN 545

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           +  ++P+    YV L +IY ++G+ ++A +V + + ++ +   P  SWIEV  + HVF  
Sbjct: 546 VLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHV 605

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGL 645
            D+SH ++++IY ++ ++  +I + GYVP+ + +L DVD EQ++R+L  HSE+LA+ +GL
Sbjct: 606 EDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGL 665

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + T    P++IV++ R+C DCH A K I+ V GREI+ RDA RFHHF DG+CSCGD+W
Sbjct: 666 MKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  233 bits (593), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 135/458 (29%), Positives = 245/458 (53%), Gaps = 11/458 (2%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R +EAL +   +  +G   V S  +  L+  C  LRS+ + + V + +L +G +P+ Y+ 
Sbjct: 27  RLKEALGIMNTMILQGT-RVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLE 85

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N +L M+ +CG + DARR+FD + +RN+VS   +I   +     LEAF  +  +      
Sbjct: 86  NTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCK 145

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               TF +++ A    EL+ +G+++H   ++ G      V  +L+ MY+KCG I  A+ +
Sbjct: 146 PDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVI 205

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD + EK  V W  +IAGYA  G  + AL+L   M+ + V  +  TF+ I++ CT  A+L
Sbjct: 206 FDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAAL 265

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
           EH K+ H  +++ G+G ++   ++L+  Y K G +E+AR +F  +  ++V++W A++ GY
Sbjct: 266 EHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGY 325

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
              G  +EA+ LF +M   G++P+ +TF +VL++CS     + G  I Q +         
Sbjct: 326 AQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDV 385

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC-----RVNGNLELGKFA 523
            +  A ++ +  + G +D+A +L+     +     W A++T C     R    LE   F 
Sbjct: 386 YLQSA-LVSMYAKCGSMDDA-SLVFNQMSERNVVAWTAIITGCCAQHGRCREALEY--FD 441

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
             K  G++P+K++ +  +L+     G ++E  +  R++
Sbjct: 442 QMKKQGIKPDKVT-FTSVLSACTHVGLVEEGRKHFRSM 478



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 168/340 (49%), Gaps = 5/340 (1%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           S  F  +++  A L  +  G+++H+  LK G   N ++   L+ MY+KCGS+ DA+ VFD
Sbjct: 47  SDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFD 106

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            + ++  V W  +I  +     + EA   Y  M+ +G K D  TF  ++   T    L+ 
Sbjct: 107 SIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQL 166

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            ++ H  +V  G  L+    ++LV  Y+K G I  AR +FD++  KNV++W  LIAGY  
Sbjct: 167 GQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQ 226

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
            G+ + A+EL E M    + PN +TF ++L  C+     E G ++ + + +    +   +
Sbjct: 227 QGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWV 286

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG--NLELGKFAAEKLY 528
               +I +  + G L+EA  L    P +     W A++T     G  +  +  F   +  
Sbjct: 287 -VNSLITMYCKCGGLEEARKLFSDLPHRDVVT-WTAMVTGYAQLGFHDEAINLFRRMQQQ 344

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
           G++P+K++ +  +L   +S   L+E   + + L   G  +
Sbjct: 345 GIKPDKMT-FTSVLTSCSSPAFLQEGKRIHQQLVHAGYNL 383



 Score = 93.2 bits (230), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 134/288 (46%), Gaps = 40/288 (13%)

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G  +EAL +   M   G ++    F  +++ C RL SLE  ++ HA +++ G   +    
Sbjct: 26  GRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLE 85

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           + L+  Y+K G + DAR VFD +  +N++SW A+I  +    +  EA + +E M L G +
Sbjct: 86  NTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCK 145

Query: 431 PNHVTFLAVLSACSRSGLSERGWEI-FQSMSRDHKIKPR------AMHYAC--------- 474
           P+ VTF+++L+A +   L + G ++  + +    +++PR       M+  C         
Sbjct: 146 PDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVI 205

Query: 475 --------------MIELLGREGLLDEAFALI---RGAPFKTTKNMWAALLTACRVNGNL 517
                         +I    ++G +D A  L+   + A     K  +A++L  C     L
Sbjct: 206 FDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAAL 265

Query: 518 ELGK----FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           E GK    +  +  YG E   +++   L+ +Y   G L+EA ++   L
Sbjct: 266 EHGKKVHRYIIQSGYGRELWVVNS---LITMYCKCGGLEEARKLFSDL 310


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/643 (37%), Positives = 361/643 (56%), Gaps = 69/643 (10%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S     +I  C  L +++  K++  + L +G   D  + + +L M+V+   + DAR +FD
Sbjct: 74  SRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFD 133

Query: 190 EMP-----------------------------------ERNLVSCNMIIAGMIDSGDYLE 214
           ++P                                   E NLVS N +I+G   SG YL+
Sbjct: 134 KLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLD 193

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
           A L+F ++  E       + ++++ A   L++  +G Q+H   +K G G + FV  ALID
Sbjct: 194 AVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALID 253

Query: 275 MYSKCGSIEDAQGVFDEMSEK---------------------------------TTVGWN 301
           MY KC    +  GVF+EM E                                    V W 
Sbjct: 254 MYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWT 313

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           ++IA  + +G   EAL+L+ EM+  GVK +  T   ++  C  +A+L H K AH   +R+
Sbjct: 314 SMIASCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRN 373

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           G   D+   SAL+D Y+K GR+  +R  FD M  +N++SWN+L+AGY  HG+  EA+ +F
Sbjct: 374 GIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIF 433

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
           E M   G +P+HV+F  VLSAC++ GL+E GW  F SMSR+H ++ R  HY+CM+ LLGR
Sbjct: 434 ELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGR 493

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
            G L+EA+A+I+  PF+    +W ALL++CRV+  ++LG+ AA++++ +EP    NY++L
Sbjct: 494 SGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGEIAAKRVFELEPRNPGNYILL 553

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV 601
            NIY S     E   V   +R +GL+  P  SWIE+K + H+ L+GD SH Q  +I  K+
Sbjct: 554 SNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEKL 613

Query: 602 DRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSH 660
            ++ +E+ K GYVP    +L DV+EQ+ +++L  HSEKLAV  GL+NT    PLQ++++ 
Sbjct: 614 AKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTKPGFPLQVIKNL 673

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           RIC DCH  IK I+    REI VRD +RFH FK G+CSCGDYW
Sbjct: 674 RICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCGDYW 716



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 145/343 (42%), Gaps = 63/343 (18%)

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
           KT +     I  ++   +    + ++  M   G+  D      +I+ C  L++L+  KQ 
Sbjct: 37  KTGISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQM 96

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM--------------------- 393
           H   +  G GLD V  S+L+  Y ++  ++DAR+VFDK+                     
Sbjct: 97  HCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRV 156

Query: 394 --------------LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
                         +  N++SWN +I+G+   G   +AV +F+ M L G++P+  +  +V
Sbjct: 157 KETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSV 216

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR-------EGLLDEAFALI 492
           L A     +   G +I   + +   + P     + +I++ G+        G+ +E   + 
Sbjct: 217 LPAVGDLDMPLMGIQIHCYVIK-QGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVD 275

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
            GA          AL+T    NG ++      ++  GM+   +S +  ++   + +GK  
Sbjct: 276 VGA--------CNALVTGLSRNGLVDNALEVFKQFKGMDLNVVS-WTSMIASCSQNGKDM 326

Query: 553 EAAEVIRTLRRKGLR--------MLPACSWIEV---KKQPHVF 584
           EA E+ R ++ +G++        +LPAC  I      K  H F
Sbjct: 327 EALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCF 369



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 11/218 (5%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I     N +  EALELF  ++ EG     S T   L+ AC  + ++   K    + L 
Sbjct: 314 SMIASCSQNGKDMEALELFREMQIEG-VKPNSVTIPCLLPACGNIAALLHGKAAHCFSLR 372

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G   D+Y+ + ++ M+ +CG M+ +R  FD MP RNLVS N ++AG    G   EA   
Sbjct: 373 NGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEA--- 429

Query: 219 FLDLWEEFSDCGSR----TFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALI 273
            ++++E    CG +    +F  ++ A     L   G     S +   G    +     ++
Sbjct: 430 -INIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMV 488

Query: 274 DMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALH 310
            +  + G +E+A  +  +M  E  +  W  +++   +H
Sbjct: 489 TLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVH 526


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/598 (38%), Positives = 363/598 (60%), Gaps = 3/598 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISAC-IGLRSIREVKRVFSYMLSTGFEPDL 165
           N   ++ALEL   ++ EG      +    L +A  +GL  +   K +  Y +  GF   +
Sbjct: 226 NGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVG--KSIHGYAIRAGFAKLV 283

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            +   +  M+ +CG +  AR +FD M ++ +VS N ++ G + +G+  +A  +F  + EE
Sbjct: 284 NISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEE 343

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
             D    T    + A A L  +  GK +H    ++  G ++ V  +LI MYSKC  ++ A
Sbjct: 344 GIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIA 403

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
             +F+ ++ +T V WN +I GYA +G   EAL+ + EM+  G+K D FT   +I     L
Sbjct: 404 SDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAEL 463

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           +   HAK  H  ++R     +I   +ALVD YSK G I  AR +FD +  ++VI+WNA+I
Sbjct: 464 SVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMI 523

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
            GYG HG G  A++LF++M    + PN +T+L+V+SACS SGL + G   F+SM +D+ +
Sbjct: 524 DGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGL 583

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
           +P   HY  M++LLGR G + EA+  I   P      ++ A+L AC+++ N+E+G+ AA+
Sbjct: 584 EPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAK 643

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
           KL+ + P++   +V+L NIY S+ K  + AEV +T+ +KGL+  P CS +E++ + H F 
Sbjct: 644 KLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFY 703

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGL 645
           SG  +H Q+K IY  ++ ++ EI   GYVP+   +L   D+ ++++L+ HSEKLA+AFGL
Sbjct: 704 SGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLILDVEDDVQEQLLNSHSEKLAIAFGL 763

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +NTS  T + + ++ R+C DCHNA K I++VTGREI+VRD  RFHHFK+G+CSCGDYW
Sbjct: 764 LNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 201/408 (49%), Gaps = 22/408 (5%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           S++E+ ++   ++  G   +   + +++ +  + G + +A R+F+ + ++     + ++ 
Sbjct: 61  SMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLK 120

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGS--RTFATMIRASAGLELISVGKQLHSCALKMGF 262
           G   +   LE  L FL     + D       F  +++       +  GK++H   +   F
Sbjct: 121 GYAKNSS-LETALAFL-CRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSF 178

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             NVF    +++MY+KC  I+DA  +FD M E+  V WNTIIAG++ +G++++AL+L   
Sbjct: 179 AANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLR 238

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M+D G + D  T   ++     +  L   K  H   +R GF   +  ++AL D YSK G 
Sbjct: 239 MQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGS 298

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           +E AR +FD M  K V+SWN+++ GY  +G  E+A+ +FE+ML  G+ P  VT +  L A
Sbjct: 299 VETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHA 358

Query: 443 CSRSGLSERGWEIFQ-----SMSRDHKIKPR--AMHYACMIELLGREGLLDEAFALIRGA 495
           C+  G  ERG  + +     ++  D  +     +M+  C      R  +  + F  + G 
Sbjct: 359 CADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKC-----KRVDIASDIFNNLNG- 412

Query: 496 PFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVL 541
               T   W A++     NG +   L  F+  K  GM+P+  +   V+
Sbjct: 413 ---RTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVI 457


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/583 (39%), Positives = 364/583 (62%), Gaps = 2/583 (0%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           E G    SST   ++      +++   K +  Y +   F+  + +   +L M+ +C  ++
Sbjct: 203 EEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLL 262

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL-WEEFSDCGSRTFATMIRAS 241
            AR++FD M  RN VS + +I G + S    EA  LF  +  ++  D    T  +++RA 
Sbjct: 263 YARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRAC 322

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
           A L  +S G++LH   +K+G   ++ +   L+ MY+KCG I+DA   FD M+ K +V ++
Sbjct: 323 AKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFS 382

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
            I++G   +G +  AL ++  M+ SG+  D  T   ++  C+ LA+L+H   +H  L+  
Sbjct: 383 AIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVR 442

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           GF  D +  +AL+D YSK G+I  AR VF++M   +++SWNA+I GYG HG G EA+ LF
Sbjct: 443 GFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLF 502

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
             +L  G++P+ +TF+ +LS+CS SGL   G   F +MSRD  I PR  H  CM+++LGR
Sbjct: 503 HDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGR 562

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
            GL+DEA   IR  PF+    +W+ALL+ACR++ N+ELG+  ++K+  + PE   N+V+L
Sbjct: 563 AGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLL 622

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV 601
            NIY+++G+  +AA +  T +  GL+ +P CSWIE+    H F+ GDQSH+Q  +I RK+
Sbjct: 623 SNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKL 682

Query: 602 DRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSH 660
           + +++E+ + GY  E   +  DV+E+E +++L YHSEKLA+AFG++N     P+ + ++ 
Sbjct: 683 EELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNL 742

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           R+C DCH AIK + ++T REI VRDA+RFHHFK+G C+CGD+W
Sbjct: 743 RVCGDCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/419 (29%), Positives = 217/419 (51%), Gaps = 31/419 (7%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           + Y  L+ ACI  +S+ E K++  + L      D  + +++  +++ C  ++ ARRLFDE
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLEL 246
           +P  +++  N II     +G +  A    +DL+      G R    T+  +++A +GL  
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGA----IDLYHSMLHLGVRPNKYTYPFVLKACSGLLA 124

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           I  G ++HS A   G   +VFV  AL+D Y+KCG + +AQ +F  MS +  V WN +IAG
Sbjct: 125 IEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
            +L+G  ++A+ L  +M++ G+  +  T   ++       +L H K  H   VR  F   
Sbjct: 185 CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNG 244

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +V  + L+D Y+K   +  AR +FD M  +N +SW+A+I GY      +EA+ELF+QM+L
Sbjct: 245 VVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMIL 304

Query: 427 -NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL------ 479
            + M P  VT  +VL AC++             +SR  K+    +    ++++L      
Sbjct: 305 KDAMDPTPVTLGSVLRACAK----------LTDLSRGRKLHCYIIKLGXVLDILLGNTLL 354

Query: 480 ---GREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN--LELGKFAAEKLYGMEPE 533
               + G++D+A         K + + ++A+++ C  NGN  + L  F   +L G++P+
Sbjct: 355 SMYAKCGVIDDAIRFFDXMNPKDSVS-FSAIVSGCVQNGNAAVALSIFRMMQLSGIDPD 412



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 158/330 (47%), Gaps = 27/330 (8%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +EALELF+ +  +   D    T  +++ AC  L  +   +++  Y++  G   D+ + N 
Sbjct: 293 KEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNT 352

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           +L M+ +CG++ DA R FD M  ++ VS + I++G + +G+   A  +F  +     D  
Sbjct: 353 LLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPD 412

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             T   ++ A + L  +  G   H   +  GF  +  +  ALIDMYSKCG I  A+ VF+
Sbjct: 413 LTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFN 472

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            M     V WN +I GY +HG   EAL L++++   G+K D  TF  ++  C+       
Sbjct: 473 RMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCS------- 525

Query: 351 AKQAHAGLVRHG-FGLDIVANS-----------ALVDFYSKWGRIEDARHVFDKM-LCKN 397
               H+GLV  G    D ++              +VD   + G I++A H    M    +
Sbjct: 526 ----HSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPD 581

Query: 398 VISWNALIAG---YGNHGRGEEAVELFEQM 424
           V  W+AL++    + N   GEE  +  + +
Sbjct: 582 VRIWSALLSACRIHKNIELGEEVSKKIQSL 611


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/580 (39%), Positives = 350/580 (60%), Gaps = 5/580 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           GF   + T   L+     +  I + +RVF  M       ++ M N ++   +RC M+ +A
Sbjct: 175 GFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGK----NVVMCNTMITGLLRCKMVAEA 230

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R LF+ + ER+ ++   ++ G+  +G   EA  +F  +  E       TF +++ A   L
Sbjct: 231 RALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFGSILTACGAL 290

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             +  GKQ+H+   +  + DNVFV  AL+DMYSKC S+  A+ VF  M  K  + W  +I
Sbjct: 291 AALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMI 350

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
            GY  +G  EEA+ ++ EM+  G+K D FT   +I  C  LASLE   Q H   +  G  
Sbjct: 351 VGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLR 410

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
             +  ++ALV  Y K G IEDA  +FD+M   + +SW AL+ GY   G+ +E ++LFE+M
Sbjct: 411 PYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKM 470

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
           L  G++P+ VTF+ VLSACSRSGL ++G   F SM +DH I P   HY CMI+L  R G 
Sbjct: 471 LSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGW 530

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L +A   I+  P       WA LL+ACR+ G++E+GK+AAE L  ++P+  ++YV+L ++
Sbjct: 531 LKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSM 590

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           + S G+  + A++ R +R + ++  P CSWI+ K + H+F + DQSH  ++ IY K+  +
Sbjct: 591 HASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWL 650

Query: 605 MLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
             ++ + GY P+  ++L DV D ++  +LS+HSEKLA+AFGLI      P++IV++ R+C
Sbjct: 651 NSKMVEEGYKPDVSSVLHDVADAEKVHMLSHHSEKLAIAFGLIFVPPEMPIRIVKNLRVC 710

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCHNA K I+ +TGR+I+VRDA RFH F +G+CSCGD+W
Sbjct: 711 VDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 750



 Score =  202 bits (514), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 147/508 (28%), Positives = 246/508 (48%), Gaps = 82/508 (16%)

Query: 130 SSTY--DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL 187
           S TY  + L++A      +   +RVF  M       +L   N +L    R G++ D  RL
Sbjct: 44  SPTYLLNTLLTAYASSGLLPHARRVFDAMPGR----NLVTGNSLLSALARAGLVRDMERL 99

Query: 188 FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAG 243
           F  +P+R+ VS N ++AG   +G +  A   ++ L  +  + G R    T + ++  ++ 
Sbjct: 100 FTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRD--EAGVRPSRITMSGVVMVASA 157

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM----------- 292
           L   ++G+Q+H   L++GFG   F    L+DMY+K G I DA+ VFDEM           
Sbjct: 158 LGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTM 217

Query: 293 --------------------SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332
                                E+ ++ W T++ G   +G   EALD++  MR  GV +D 
Sbjct: 218 ITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQ 277

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
           +TF  I+  C  LA+LE  KQ HA + R  +  ++   SALVD YSK   +  A  VF +
Sbjct: 278 YTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRR 337

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           M+ KN+ISW A+I GYG +G GEEAV +F +M  +G++P+  T  +V+S+C+     E G
Sbjct: 338 MMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCANLASLEEG 397

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF---------------ALIRG-AP 496
            + F  ++    ++P       ++ L G+ G +++A                AL+ G A 
Sbjct: 398 AQ-FHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYAQ 456

Query: 497 FKTTKN------------------MWAALLTACRVNGNLELGK---FAAEKLYGMEPEKL 535
           F   K                    +  +L+AC  +G ++ G+    + ++ + + P   
Sbjct: 457 FGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLD- 515

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
            +Y  ++++Y+ SG LK+A E I+ + R
Sbjct: 516 DHYTCMIDLYSRSGWLKQAEEFIKQMPR 543


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/598 (38%), Positives = 372/598 (62%), Gaps = 6/598 (1%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           R+A++LF  +E  G +     TY +++SAC  L  +   K++ S ++  G   D+ +   
Sbjct: 231 RDAIDLFLDMELSG-YVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 289

Query: 171 VLLMHVRC---GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDY-LEAFLLFLDLWEEF 226
           ++ M+ +C   G + D+R++F++MPE N++S   II   + SG+   EA  LF  +    
Sbjct: 290 LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGH 349

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 +F+++++A   L     G+Q++S A+K+G      V  +LI MY++ G +EDA+
Sbjct: 350 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR 409

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
             FD + EK  V +N I+ GYA +  SEEA  L+ E+ D+G+ +  FTF+ ++     + 
Sbjct: 410 KAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIG 469

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           ++   +Q H  L++ G+  +    +AL+  YS+ G IE A  VF++M  +NVISW ++I 
Sbjct: 470 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 529

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           G+  HG    A+E+F +ML  G +PN +T++AVLSACS  G+   G + F SM ++H I 
Sbjct: 530 GFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIV 589

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           PR  HYACM++LLGR GLL EA   I   P      +W  LL ACRV+GN ELG+ AAE 
Sbjct: 590 PRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEM 649

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           +   EP+  + Y++L N++ S+G+ K+  ++ ++++ + L     CSWIEV+ + H F  
Sbjct: 650 ILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHV 709

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGL 645
           G+ SH Q  +IY+++D++  +I + GY+P+   +L D+ +EQ+++ L  HSEK+AVAFGL
Sbjct: 710 GETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGL 769

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I+TS   P++I ++ R+C DCH AIK I+M TGREIVVRD++RFHH K+G+CSC DYW
Sbjct: 770 ISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 197/369 (53%), Gaps = 16/369 (4%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           +TY  L+ +CI  R+ +  K V   ++ +G E D  + N ++ ++ +CG    AR +F+ 
Sbjct: 45  TTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEG 104

Query: 191 M-PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
           M  +R+LVS + +++   ++    +A   FLD+ E         FA +IRA +      V
Sbjct: 105 MGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWV 164

Query: 250 GKQLHSCALKMGFGD-NVFVSCALIDMYSK-CGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           G+ ++   +K G+ + +V V C LIDM+ K  G +  A  VFD+M E+  V W  +I  +
Sbjct: 165 GEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRF 224

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           A  G + +A+DL+ +M  SG   D FT+S ++  CT L  L   KQ H+ ++R G  LD+
Sbjct: 225 AQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDV 284

Query: 368 VANSALVDFYSKW---GRIEDARHVFDKMLCKNVISWNALIAGYGNHGR-GEEAVELFEQ 423
               +LVD Y+K    G ++D+R VF++M   NV+SW A+I  Y   G   +EA+ELF +
Sbjct: 285 CVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCK 344

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC----MIELL 479
           M+   +RPNH +F +VL AC        G +++      + +K       C    +I + 
Sbjct: 345 MISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKLGIASVNCVGNSLISMY 399

Query: 480 GREGLLDEA 488
            R G +++A
Sbjct: 400 ARSGRMEDA 408



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 6/148 (4%)

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           H +S   LDL   M       D  T+S++++ C R  + +  K  H  L++ G  LD V 
Sbjct: 27  HAFS--TLDL---MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVV 81

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
            + L+  YSK G  E AR +F+ M  K +++SW+A+++ + N+    +A+  F  ML  G
Sbjct: 82  LNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELG 141

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIF 456
             PN   F AV+ ACS +  +  G  I+
Sbjct: 142 FYPNEYCFAAVIRACSNANYAWVGEIIY 169


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  450 bits (1158), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/605 (39%), Positives = 367/605 (60%), Gaps = 4/605 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKR-VFSYMLST 159
           I   VL++ +  ALEL   +  + G      T  + + AC G+ ++RE+ R + S ++  
Sbjct: 184 IAGCVLHEYHHRALELLREMN-KSGMCPNMFTLSSALKACAGM-ALRELGRQLHSSLIKM 241

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
               D ++   ++ M+ +C  M DAR +F  MPER++++ N +I+G   + +  EA  LF
Sbjct: 242 DMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLF 301

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
             +  E       T +T++++ A L+   + +Q+H+ +LK GF  + +V  +LID Y KC
Sbjct: 302 PLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKC 361

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           G +EDA  VF+E      V + +++  YA  G  EEAL LY EM+D G+K D F  S ++
Sbjct: 362 GHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLL 421

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
             C  L++ E  KQ H  +++ GF  DI A ++LV+ Y+K G IEDA   F ++  + ++
Sbjct: 422 NACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIV 481

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           SW+A+I G   HG G+EA++LF+QML  G+ PNH+T ++VL AC+ +GL       F SM
Sbjct: 482 SWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSM 541

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
                I+P   HYACMI+LLGR G L+ A  L+   PF+    +W ALL A R++ N++L
Sbjct: 542 KILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDL 601

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
           G+ AAE L  +EPEK   +V+L NIY S G   + A V R ++   ++  P  SW+EVK 
Sbjct: 602 GEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKD 661

Query: 580 QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEK 638
           + + F+ GD+SH ++ EIY K+D +   + K GYVP  +  L DV+  E +++L +HSEK
Sbjct: 662 KVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEK 721

Query: 639 LAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCS 698
           LAVAFGLI T    P+++ ++ RIC DCH  +K I+ +  REI+VRD +RFHHF++G CS
Sbjct: 722 LAVAFGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCS 781

Query: 699 CGDYW 703
           CG+YW
Sbjct: 782 CGEYW 786



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 177/320 (55%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G       + +++ AC   + +   K+V   ++ TGF+ D ++ N +++++ +CG   DA
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R LFD +P+R++VS N + +  + S  + EA  LF D+          + ++MI    GL
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
           E    G+++H   +K+G+  + F + AL+DMY+K G +EDA  VFDE+++   V WN II
Sbjct: 125 EDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAII 184

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           AG  LH Y   AL+L  EM  SG+  + FT S  ++ C  +A  E  +Q H+ L++   G
Sbjct: 185 AGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMG 244

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D      L+D YSK   ++DAR VF  M  +++I+WNA+I+G+  +   EEA  LF  M
Sbjct: 245 SDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLM 304

Query: 425 LLNGMRPNHVTFLAVLSACS 444
              G+  N  T   VL + +
Sbjct: 305 HTEGIGFNQTTLSTVLKSIA 324



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/231 (33%), Positives = 133/231 (57%)

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
           C    F ++++A    + + +GKQ+H   +  GF  + FV+ +L+ +Y+KCG   DA+ +
Sbjct: 8   CNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSL 67

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD + +++ V WN + + Y       EA+ L+++M  SG++ + F+ S +I +CT L   
Sbjct: 68  FDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDS 127

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
              ++ H  L++ G+  D  + +ALVD Y+K G +EDA  VFD++   +++SWNA+IAG 
Sbjct: 128 VQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGC 187

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
             H     A+EL  +M  +GM PN  T  + L AC+   L E G ++  S+
Sbjct: 188 VLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSL 238



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 95/185 (51%), Gaps = 2/185 (1%)

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           G+K + F F  +++ CT    L   KQ H  +V  GF  D    ++LV  Y+K G   DA
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           R +FD +  ++V+SWNAL + Y +     EAV LF  M+L+G+RPN  +  ++++ C+  
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
             S +G +I   + +       A     ++++  + G+L++A ++      K     W A
Sbjct: 125 EDSVQGRKIHGYLIK-LGYDSDAFSANALVDMYAKVGILEDASSVFDEIA-KPDIVSWNA 182

Query: 507 LLTAC 511
           ++  C
Sbjct: 183 IIAGC 187


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/598 (38%), Positives = 372/598 (62%), Gaps = 6/598 (1%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           R+A++LF  +E  G +     TY +++SAC  L  +   K++ S ++  G   D+ +   
Sbjct: 213 RDAIDLFLDMELSG-YVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 271

Query: 171 VLLMHVRC---GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDY-LEAFLLFLDLWEEF 226
           ++ M+ +C   G + D+R++F++MPE N++S   II   + SG+   EA  LF  +    
Sbjct: 272 LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGH 331

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 +F+++++A   L     G+Q++S A+K+G      V  +LI MY++ G +EDA+
Sbjct: 332 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR 391

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
             FD + EK  V +N I+ GYA +  SEEA  L+ E+ D+G+ +  FTF+ ++     + 
Sbjct: 392 KAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIG 451

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           ++   +Q H  L++ G+  +    +AL+  YS+ G IE A  VF++M  +NVISW ++I 
Sbjct: 452 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 511

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           G+  HG    A+E+F +ML  G +PN +T++AVLSACS  G+   G + F SM ++H I 
Sbjct: 512 GFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIV 571

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           PR  HYACM++LLGR GLL EA   I   P      +W  LL ACRV+GN ELG+ AAE 
Sbjct: 572 PRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEM 631

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           +   EP+  + Y++L N++ S+G+ K+  ++ ++++ + L     CSWIEV+ + H F  
Sbjct: 632 ILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHV 691

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGL 645
           G+ SH Q  +IY+++D++  +I + GY+P+   +L D+ +EQ+++ L  HSEK+AVAFGL
Sbjct: 692 GETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGL 751

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I+TS   P++I ++ R+C DCH AIK I+M TGREIVVRD++RFHH K+G+CSC DYW
Sbjct: 752 ISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/369 (31%), Positives = 197/369 (53%), Gaps = 16/369 (4%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           +TY  L+ +CI  R+ +  K V   ++ +G E D  + N ++ ++ +CG    AR +F+ 
Sbjct: 27  TTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEG 86

Query: 191 M-PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
           M  +R+LVS + +++   ++    +A   FLD+ E         FA +IRA +      V
Sbjct: 87  MGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWV 146

Query: 250 GKQLHSCALKMGFGD-NVFVSCALIDMYSK-CGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           G+ ++   +K G+ + +V V C LIDM+ K  G +  A  VFD+M E+  V W  +I  +
Sbjct: 147 GEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRF 206

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           A  G + +A+DL+ +M  SG   D FT+S ++  CT L  L   KQ H+ ++R G  LD+
Sbjct: 207 AQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDV 266

Query: 368 VANSALVDFYSKW---GRIEDARHVFDKMLCKNVISWNALIAGYGNHGR-GEEAVELFEQ 423
               +LVD Y+K    G ++D+R VF++M   NV+SW A+I  Y   G   +EA+ELF +
Sbjct: 267 CVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCK 326

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC----MIELL 479
           M+   +RPNH +F +VL AC        G +++      + +K       C    +I + 
Sbjct: 327 MISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYS-----YAVKLGIASVNCVGNSLISMY 381

Query: 480 GREGLLDEA 488
            R G +++A
Sbjct: 382 ARSGRMEDA 390



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 77/148 (52%), Gaps = 6/148 (4%)

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           H +S   LDL   M       D  T+S++++ C R  + +  K  H  L++ G  LD V 
Sbjct: 9   HAFS--TLDL---MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVV 63

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
            + L+  YSK G  E AR +F+ M  K +++SW+A+++ + N+    +A+  F  ML  G
Sbjct: 64  LNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELG 123

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIF 456
             PN   F AV+ ACS +  +  G  I+
Sbjct: 124 FYPNEYCFAAVIRACSNANYAWVGEIIY 151


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 215/571 (37%), Positives = 357/571 (62%), Gaps = 2/571 (0%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y +LI+AC   RS+ + + + +++  + F   +++ N ++ ++ +CG + DARR+FD MP
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
            R++ S   +IAG   +    EA  L   +          TFA++++A+       +G+Q
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQ 186

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H+  +K  + D+V+V  AL+DMY++CG ++ A  VFD++  K  V WN +IAG+A  G 
Sbjct: 187 IHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGD 246

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            E  L ++ EM+ +G +  HFT+S +      + +LE  K  HA +++ G  L     + 
Sbjct: 247 GETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNT 306

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           ++D Y+K G + DAR VFD++  K+V++WN+++  +  +G G EAV  FE+M   G+  N
Sbjct: 307 ILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLN 366

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            +TFL++L+ACS  GL + G + F  M +++ ++P   HY  +++LLGR GLL++A   I
Sbjct: 367 QITFLSILTACSHGGLVKEGKQYFD-MMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
              P K T  +W ALL +CR++ N ++G+FAA+ ++ ++P+     V+L NIY S+G+  
Sbjct: 426 FKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWD 485

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
            AA V + ++  G++  PACSW+E++   H+F++ D +H +++EIY+K + + ++I K G
Sbjct: 486 AAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAG 545

Query: 613 YVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           YVP    +L  VDEQE++  L YHSEK+A+AF LIN      ++I+++ RIC DCH+A +
Sbjct: 546 YVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFR 605

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
            I+ V  REIVVRD +RFHHF  G CSCGDY
Sbjct: 606 YISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 154/318 (48%), Gaps = 5/318 (1%)

Query: 93  PSAGICSQ---IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV 149
           P+  +CS    I     N    EAL L   +   G F     T+ +L+ A     S    
Sbjct: 126 PARDMCSWTSLIAGYAQNDMPDEALGLLPGM-LRGRFKPNGFTFASLLKAAGASASSGIG 184

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           +++ +  +   +  D+Y+ + +L M+ RCG M  A  +FD++  +N VS N +IAG    
Sbjct: 185 EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 244

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
           GD     L+F ++     +    T++++  A AG+  +  GK +H+  +K G   + FV 
Sbjct: 245 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG 304

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
             ++DMY+K GS+ DA+ VFD + +K  V WN+++  +A +G   EA+  + EMR  GV 
Sbjct: 305 NTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVH 364

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
           ++  TF  I+  C+    ++  KQ    +  +    +I     +VD   + G + DA   
Sbjct: 365 LNQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVF 424

Query: 390 FDKMLCKNVIS-WNALIA 406
             KM  K   + W AL+ 
Sbjct: 425 IFKMPMKPTAAVWGALLG 442


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/526 (41%), Positives = 338/526 (64%), Gaps = 2/526 (0%)

Query: 180 MMIDA-RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMI 238
           M +D+ R++F+ MPE++LVS N IIAG   +G Y E   +  ++        S T ++++
Sbjct: 248 MSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVL 307

Query: 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV 298
              A    IS GK++H C+++ G    V+V+ +LIDMY+KC  + D+  VF  ++E+  +
Sbjct: 308 PLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGI 367

Query: 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
            WN+IIAG   +G  +E L  + +M  + +K   ++FS I+  C  L +L   KQ H  +
Sbjct: 368 SWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI 427

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
            R+GF  +I   S+LVD Y+K G I  AR +FD+M  ++++SW A+I G   HG   +A+
Sbjct: 428 TRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAI 487

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478
           ELFEQM   G+ PN+V F+AVL+ACS +GL +  W+ F SM+ D  I P   HYA + +L
Sbjct: 488 ELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDL 547

Query: 479 LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538
           LGR G L+EA+  I G P   T ++WA LL+ACRV+ N+++ +  A ++  ++P+    Y
Sbjct: 548 LGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAY 607

Query: 539 VVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIY 598
           ++L NIY+++ + KEAA+   +LRR G+R  PACSWIEV+ + + F++GD+SH   ++I 
Sbjct: 608 ILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIR 667

Query: 599 RKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVL-SYHSEKLAVAFGLINTSDWTPLQIV 657
             ++ +M  + K GYVP+   +  DV+E++++ L   HSE+LA+ FG+INT   T +++ 
Sbjct: 668 EAMEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVT 727

Query: 658 QSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++ R+C DCH A K I+ + GREIVVRD SRFHHFK+G CSCGDYW
Sbjct: 728 KNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 138/242 (57%), Gaps = 1/242 (0%)

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
           I + K +    +  G + ++Y+ + ++ M+ +C  ++D+ R+F  + ER+ +S N IIAG
Sbjct: 316 ISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAG 375

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
            + +G + E    F  +        S +F++++ A A L  + +GKQLH    + GF +N
Sbjct: 376 CVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDEN 435

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
           +F++ +L+DMY+KCG+I  A+ +FD M  +  V W  +I G ALHG++ +A++L+ +M+ 
Sbjct: 436 IFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKT 495

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHA-KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
            G++ ++  F  ++  C+    ++ A K  ++  +  G    +   +A+ D   + GR+E
Sbjct: 496 EGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLE 555

Query: 385 DA 386
           +A
Sbjct: 556 EA 557



 Score =  129 bits (323), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 204/437 (46%), Gaps = 37/437 (8%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMM-------ID 183
           + + +++ AC  L  +   + +  Y++  G + DLY  N ++ M+ +   +       + 
Sbjct: 109 NVFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLG 168

Query: 184 ARRLFDEMPE--RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRAS 241
           A ++ DEM E  R++ + ++++         +EAF   +        C SR F   +   
Sbjct: 169 ASQVLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNYDV-------SCRSREFEAQV-LE 220

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
              +  S  +++ +C L     D            S   S++  + +F+ M EK  V WN
Sbjct: 221 IDYKPRSEYREMEACNLGQQIKD-----------ISHSMSVDSVRKIFEMMPEKDLVSWN 269

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           TIIAG A +G   E L +  EM  + +K D FT S ++ +      +   K+ H   +R 
Sbjct: 270 TIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQ 329

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           G   ++   S+L+D Y+K  R+ D+  VF  +  ++ ISWN++IAG   +G  +E ++ F
Sbjct: 330 GLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFF 389

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
            QML+  ++P   +F +++ AC+       G ++   ++R+          + ++++  +
Sbjct: 390 RQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN-GFDENIFIASSLVDMYAK 448

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN----LELGKFAAEKLYGMEPEKLSN 537
            G +  A  +      +   + W A++  C ++G+    +EL  F   K  G+EP  ++ 
Sbjct: 449 CGNIRTARQIFDRMRLRDMVS-WTAMIMGCALHGHALDAIEL--FEQMKTEGIEPNYVA- 504

Query: 538 YVVLLNIYNSSGKLKEA 554
           ++ +L   + +G + EA
Sbjct: 505 FMAVLTACSHAGLVDEA 521



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 98/214 (45%), Gaps = 3/214 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N  + E L+ F  +         S ++ +++ AC  L ++   K++  Y+  
Sbjct: 371 SIIAGCVQNGLFDEGLKFFRQM-LMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITR 429

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF+ ++++ + ++ M+ +CG +  AR++FD M  R++VS   +I G    G  L+A  L
Sbjct: 430 NGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIEL 489

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYS 277
           F  +  E  +     F  ++ A +   L+    K  +S  L  G    V    A+ D+  
Sbjct: 490 FEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLG 549

Query: 278 KCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALH 310
           + G +E+A      M    T   W T+++   +H
Sbjct: 550 RAGRLEEAYDFICGMPIGPTGSVWATLLSACRVH 583



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 131/315 (41%), Gaps = 36/315 (11%)

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
           +++R    ++  S  +QLH+  LK     ++     L+ +YS    + D+  +F+ +   
Sbjct: 13  SLLRNPLSIKSRSQAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTLHFP 71

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             + W ++I  Y  HG   ++L  +  M  SG+  DH  F  +++ C  L  L   +  H
Sbjct: 72  PALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLH 131

Query: 356 AGLVRHGFGLDIVANSALVDFYSKW------GRIE-DARHVFDKML--CKNVISWNALIA 406
             ++R G   D+   +AL++ YSK       GR    A  V D+M    ++V + + L+ 
Sbjct: 132 GYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLV- 190

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV----------LSACSRSGLSERGWEIF 456
             GN GR    +E F   +    R      L +          + AC+   L ++  +I 
Sbjct: 191 --GNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEACN---LGQQIKDIS 245

Query: 457 QSMSRDHKIKPRAM-------HYACMIELLGREGLLDEAFALIR---GAPFKTTKNMWAA 506
            SMS D   K   M        +  +I    R GL  E   ++R   GA  K      ++
Sbjct: 246 HSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSS 305

Query: 507 LLTACRVNGNLELGK 521
           +L     N ++  GK
Sbjct: 306 VLPLIAENVDISKGK 320


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 232/580 (40%), Positives = 351/580 (60%), Gaps = 5/580 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           GF   + T+  L+     +  I + KRVF  M+      ++ M N ++   +RC M+ +A
Sbjct: 179 GFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVK----NVVMYNTMITGLLRCKMVEEA 234

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R +F+ M +R+ ++   ++ G+  +G   EA  +F  +  E       TF +++ A   L
Sbjct: 235 RGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGAL 294

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
                GKQ+H+  ++  +  N+FV  AL+DMYSKC SI  A+ VF  M+ K  + W  +I
Sbjct: 295 AASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMI 354

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
            GY  +G  EEA+ ++ EM+  G+K + FT   +I  C  LASLE   Q H   +  G  
Sbjct: 355 VGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANLASLEEGAQFHCMALVSGLR 414

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
             I  +SALV  Y K G IEDA  +FD+M   + +S+ AL++GY   G+ +E ++LFE+M
Sbjct: 415 PYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKM 474

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
           LL G++PN VTF+ VLSACSRSGL E+G   F SM +DH I     HY CMI+L  R G 
Sbjct: 475 LLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGR 534

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L EA   IR  P       WA LL+ACR+ G++E+GK+AAE L   +P+  ++YV+L ++
Sbjct: 535 LKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSM 594

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           + S G+  E A + R +R + ++  P CSWI+ K + H+F + DQSH  +  IY K+  +
Sbjct: 595 HASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWL 654

Query: 605 MLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
             ++++ GY P+  ++L DV D ++  +LS HSEKLA+AFGLI   +  P+++V++ R+C
Sbjct: 655 NSKMAEEGYKPDVSSVLHDVADAEKVHMLSNHSEKLAIAFGLIFVPEEMPIRVVKNLRVC 714

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCHNA K I+ +TGR+I+VRDA RFH F +G+CSCGD+W
Sbjct: 715 VDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 754


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/598 (38%), Positives = 371/598 (62%), Gaps = 6/598 (1%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           R+A++LF  +E  G +     TY +++SAC  L  +   K++ S ++  G   D+ +   
Sbjct: 38  RDAIDLFLDMELSG-YVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 96

Query: 171 VLLMHVRC---GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDY-LEAFLLFLDLWEEF 226
           ++ M+ +C   G + D+R++F++MPE N++S   II     SG+   EA  LF  +    
Sbjct: 97  LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGH 156

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 +F+++++A   L     G+Q++S A+K+G      V  +LI MY++ G +EDA+
Sbjct: 157 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR 216

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
             FD + EK  V +N I+ GYA +  SEEA  L+ E+ D+G+ +  FTF+ ++     + 
Sbjct: 217 KAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIG 276

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           ++   +Q H  L++ G+  +    +AL+  YS+ G IE A  VF++M  +NVISW ++I 
Sbjct: 277 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 336

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           G+  HG    A+E+F +ML  G +PN +T++AVLSACS  G+   G + F SM ++H I 
Sbjct: 337 GFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIV 396

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           PR  HYACM++LLGR GLL EA   I   P      +W  LL ACRV+GN ELG+ AAE 
Sbjct: 397 PRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEM 456

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           +   EP+  + Y++L N++ S+G+ K+  ++ ++++ + L     CSWIEV+ + H F  
Sbjct: 457 ILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHV 516

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGL 645
           G+ SH Q  +IY+++D++  +I + GY+P+   +L D+ +EQ+++ L  HSEK+AVAFGL
Sbjct: 517 GETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGL 576

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I+TS   P++I ++ R+C DCH AIK I+M TGREIVVRD++RFHH K+G+CSC DYW
Sbjct: 577 ISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/424 (29%), Positives = 213/424 (50%), Gaps = 53/424 (12%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A ++FD+MPERNLV+  ++I      G   +A  LFLD+          T+++++ A   
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC---GSIEDAQGVFDEMSEKTTVGW 300
           L L+++GKQLHS  +++G   +V V C+L+DMY+KC   GS++D++ VF++M E   + W
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 301 NTIIAGYALHGY-SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
             II  YA  G   +EA++L+ +M    ++ +HF+FS +++ C  L+     +Q ++  V
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 188

Query: 360 RHGFG-LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
           + G   ++ V NS L+  Y++ GR+EDAR  FD +  KN++S+NA++ GY  + + EEA 
Sbjct: 189 KLGIASVNCVGNS-LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 247

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSAC----------------------------------- 443
            LF ++   G+  +  TF ++LS                                     
Sbjct: 248 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMY 307

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN- 502
           SR G  E  +++F  M   + I      +  MI    + G    A  +        TK  
Sbjct: 308 SRCGNIEAAFQVFNEMEDRNVIS-----WTSMITGFAKHGFATRALEMFHKMLETGTKPN 362

Query: 503 --MWAALLTACRVNGNLELGKFAAEKLY---GMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
              + A+L+AC   G +  G+     +Y   G+ P ++ +Y  ++++   SG L EA E 
Sbjct: 363 EITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP-RMEHYACMVDLLGRSGLLVEAMEF 421

Query: 558 IRTL 561
           I ++
Sbjct: 422 INSM 425


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/598 (39%), Positives = 364/598 (60%), Gaps = 2/598 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N  Y E+L+LF  +   G +   + T    + +C+GL +    K V    L   ++ DL+
Sbjct: 215 NCFYEESLQLFNQMRIMG-YKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLF 273

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   +L ++ + G +IDA+RLF+EMP+ +L+  +++IA    S    EA  LFL + +  
Sbjct: 274 VGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTS 333

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
               + TFA++++A A    + +GKQ+HSC LK G   NVFVS A++D+Y+KCG IE++ 
Sbjct: 334 VVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSM 393

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +F+E+ ++  V WNTII GY   G  E A++L+  M +  ++    T+S ++R    LA
Sbjct: 394 KLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLA 453

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           +LE   Q H+  ++  +  D V  ++L+D Y+K GRI DAR  FDKM  ++ +SWNA+I 
Sbjct: 454 ALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMIC 513

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GY  HG   EA+ LF+ M     +PN +TF+ VLSACS +GL  +G   F+SMS+D+ IK
Sbjct: 514 GYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIK 573

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P   HY CM+ LLGR G  DEA  LI    ++ +  +W ALL AC ++  ++LG+  A+ 
Sbjct: 574 PCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQH 633

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           +  MEP   + +V+L N+Y ++G+    A V + +++K +R  P  SW+E +   H F  
Sbjct: 634 VLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSV 693

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGL 645
           GD SH   K I   ++ +  +    GYVP+   +L DV D++++R L  HSE+LA+A+GL
Sbjct: 694 GDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERLALAYGL 753

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I T     ++I+++ RIC DCH  +KLI+ V  REIV+RD +RFHHF+ G+CSCGDYW
Sbjct: 754 IRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/306 (31%), Positives = 168/306 (54%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           K +  ++L  G   DL+ +N +L  +V+   + DA +LFDEMP+ N +S   +  G    
Sbjct: 55  KHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRD 114

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
             + +A    L +++E  +     F T+++    ++L  +   LH+C  K+G   + FV 
Sbjct: 115 HQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVG 174

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            ALID YS  G+++ A+ VFD++  K  V W  ++A YA + + EE+L L+ +MR  G K
Sbjct: 175 TALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYK 234

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            ++FT S  ++ C  L +    K  H   ++  +  D+    AL++ Y+K G I DA+ +
Sbjct: 235 PNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRL 294

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449
           F++M   ++I W+ +IA Y    R +EA++LF +M    + PN+ TF +VL AC+ S   
Sbjct: 295 FEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSL 354

Query: 450 ERGWEI 455
           + G +I
Sbjct: 355 DLGKQI 360



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 115/215 (53%), Gaps = 3/215 (1%)

Query: 231 SRTFATMIRA--SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
           S ++A M++     G + I+ GK LH   LK G   ++F    L++ Y +  S++DA  +
Sbjct: 34  SHSYAHMLQQIIRNGADPIA-GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKL 92

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FDEM +  T+ + T+  GY+      +AL     +   G +++ F F+ ++++   +   
Sbjct: 93  FDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLA 152

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
                 HA + + G   D    +AL+D YS  G ++ ARHVFD + CK+++SW  ++A Y
Sbjct: 153 HLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACY 212

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
             +   EE+++LF QM + G +PN+ T    L +C
Sbjct: 213 AENCFYEESLQLFNQMRIMGYKPNNFTISGALKSC 247


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/612 (39%), Positives = 360/612 (58%), Gaps = 33/612 (5%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG----- 179
           G +  S T+  L+ +C  + + +E K++  ++L  G E D ++   ++ M+ + G     
Sbjct: 127 GVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYA 186

Query: 180 --------------------------MMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
                                      + DARRLF+E+P R+ VS N +IAG   SG + 
Sbjct: 187 ELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFE 246

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA   F ++          T  T++ A A    + +G  + S     G G N+ +  ALI
Sbjct: 247 EALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALI 306

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           DMYSKCG ++ A+ +F+ + EK  + WN +I GY+     +EAL L+ +M+ S V+ +  
Sbjct: 307 DMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDV 366

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGL-DIVANSALVDFYSKWGRIEDARHVFDK 392
           TF  I+  C  L +L+  K  HA + +   GL +    ++L+D Y+K G IE A+ VF  
Sbjct: 367 TFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAG 426

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           M  K++ SWNA+I+G   HG    A+ELF QM   G  P+ +TF+ VLSACS +GL E G
Sbjct: 427 MKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELG 486

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACR 512
            + F SM  D+ I P+  HY CMI+LLGR GL DEA AL++    K    +W +LL ACR
Sbjct: 487 RQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACR 546

Query: 513 VNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPAC 572
           V+GN+ELG+FAA+ L+ +EPE    YV+L NIY ++G+  + A +   L  KG++ +P C
Sbjct: 547 VHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGC 606

Query: 573 SWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRV 631
           S IEV    H FL GD+ H Q+++IY+ +D +   + K G+VP+   +L D+DE+ ++  
Sbjct: 607 SSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGS 666

Query: 632 LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHH 691
           LS+HSEKLA+AFGLI+T   T ++IV++ R+C +CH+AIKLI+ +  REI+ RD +RFHH
Sbjct: 667 LSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHH 726

Query: 692 FKDGMCSCGDYW 703
           FKDG CSC DYW
Sbjct: 727 FKDGSCSCMDYW 738



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 114/442 (25%), Positives = 211/442 (47%), Gaps = 39/442 (8%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV--RCGMMIDARRLFDEMP 192
            L+S C   +S + +K++ S ++ TG     +  ++++        G +  A  LF+ + 
Sbjct: 37  TLLSTC---KSFQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIE 93

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           + N    N +I G   S   + A   ++ +     +  S TF  ++++ A +     GKQ
Sbjct: 94  QPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQ 153

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSI------------------------------ 282
           +H   LK+G   + FV  +LI+MY++ G +                              
Sbjct: 154 IHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGC 213

Query: 283 -EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
            +DA+ +F+E+  +  V WN +IAGYA  G  EEAL  + EM+ + V  +  T   ++  
Sbjct: 214 LDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSA 273

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C +  SLE      + +  HG G ++   +AL+D YSK G ++ AR +F+ +  K++ISW
Sbjct: 274 CAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIISW 333

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           N +I GY +    +EA+ LF +M  + + PN VTF+++L AC+  G  + G  I   + +
Sbjct: 334 NVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYIDK 393

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG--NLEL 519
                     +  +I++  + G ++ A  +  G   K+  + W A+++   ++G  N+ L
Sbjct: 394 KFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS-WNAMISGLAMHGHANMAL 452

Query: 520 GKFAAEKLYGMEPEKLSNYVVL 541
             F   +  G EP+ ++   VL
Sbjct: 453 ELFRQMRDEGFEPDDITFVGVL 474



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 161/321 (50%), Gaps = 8/321 (2%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R+ EAL  F+ ++         ST   ++SAC    S+     V S++   G   +L + 
Sbjct: 244 RFEEALAFFQEMK-RANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLV 302

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N ++ M+ +CG +  AR LF+ + E++++S N++I G      Y EA  LF  + +   +
Sbjct: 303 NALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVE 362

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFG-DNVFVSCALIDMYSKCGSIEDAQG 287
               TF +++ A A L  + +GK +H+   K   G  N  +  +LIDMY+KCG+IE A+ 
Sbjct: 363 PNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQ 422

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           VF  M  K+   WN +I+G A+HG++  AL+L+ +MRD G + D  TF  ++  C+    
Sbjct: 423 VFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGL 482

Query: 348 LEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALI 405
           +E  +Q  + +V  +     +     ++D   + G  ++A  +   M  K +   W +L+
Sbjct: 483 VELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLL 542

Query: 406 AGYGNHGRGE----EAVELFE 422
                HG  E     A  LFE
Sbjct: 543 GACRVHGNVELGEFAAKHLFE 563


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/598 (38%), Positives = 371/598 (62%), Gaps = 6/598 (1%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           R+A++LF  +E  G +     TY +++SAC  L  +   K++ S ++  G   D+ +   
Sbjct: 33  RDAIDLFLDMELSG-YVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCS 91

Query: 171 VLLMHVRC---GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDY-LEAFLLFLDLWEEF 226
           ++ M+ +C   G + D+R++F++MPE N++S   II     SG+   EA  LF  +    
Sbjct: 92  LVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGH 151

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 +F+++++A   L     G+Q++S A+K+G      V  +LI MY++ G +EDA+
Sbjct: 152 IRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDAR 211

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
             FD + EK  V +N I+ GYA +  SEEA  L+ E+ D+G+ +  FTF+ ++     + 
Sbjct: 212 KAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIG 271

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           ++   +Q H  L++ G+  +    +AL+  YS+ G IE A  VF++M  +NVISW ++I 
Sbjct: 272 AMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMIT 331

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           G+  HG    A+E+F +ML  G +PN +T++AVLSACS  G+   G + F SM ++H I 
Sbjct: 332 GFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIV 391

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           PR  HYACM++LLGR GLL EA   I   P      +W  LL ACRV+GN ELG+ AAE 
Sbjct: 392 PRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEM 451

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           +   EP+  + Y++L N++ S+G+ K+  ++ ++++ + L     CSWIEV+ + H F  
Sbjct: 452 ILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHV 511

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGL 645
           G+ SH Q  +IY+++D++  +I + GY+P+   +L D+ +EQ+++ L  HSEK+AVAFGL
Sbjct: 512 GETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGL 571

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I+TS   P++I ++ R+C DCH AIK I+M TGREIVVRD++RFHH K+G+CSC DYW
Sbjct: 572 ISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 123/424 (29%), Positives = 213/424 (50%), Gaps = 53/424 (12%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A ++FD+MPERNLV+  ++I      G   +A  LFLD+          T+++++ A   
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC---GSIEDAQGVFDEMSEKTTVGW 300
           L L+++GKQLHS  +++G   +V V C+L+DMY+KC   GS++D++ VF++M E   + W
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 301 NTIIAGYALHGY-SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
             II  YA  G   +EA++L+ +M    ++ +HF+FS +++ C  L+     +Q ++  V
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAV 183

Query: 360 RHGFG-LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
           + G   ++ V NS L+  Y++ GR+EDAR  FD +  KN++S+NA++ GY  + + EEA 
Sbjct: 184 KLGIASVNCVGNS-LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 242

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSAC----------------------------------- 443
            LF ++   G+  +  TF ++LS                                     
Sbjct: 243 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMY 302

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN- 502
           SR G  E  +++F  M   + I      +  MI    + G    A  +        TK  
Sbjct: 303 SRCGNIEAAFQVFNEMEDRNVIS-----WTSMITGFAKHGFATRALEMFHKMLETGTKPN 357

Query: 503 --MWAALLTACRVNGNLELGKFAAEKLY---GMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
              + A+L+AC   G +  G+     +Y   G+ P ++ +Y  ++++   SG L EA E 
Sbjct: 358 EITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVP-RMEHYACMVDLLGRSGLLVEAMEF 416

Query: 558 IRTL 561
           I ++
Sbjct: 417 INSM 420


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 228/636 (35%), Positives = 382/636 (60%), Gaps = 16/636 (2%)

Query: 82  ESSLPDTQMKKPSAGIC---------SQIEKLVLNKRYREALELFEILEFEGGFDVGSST 132
           +SS+PD      +   C         + + +  LN      L + +++   G  +   + 
Sbjct: 35  QSSIPDNNTTTTNKNKCNISHYIIDDTNLLRPSLNPNSTTGLHVLDLIN-NGSLEPDRTI 93

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y+ L+  C  L  +++ K V ++++++ F  DL ++N +L M+ +CG +  AR++FDEM 
Sbjct: 94  YNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMC 153

Query: 193 ERNLVSCNMIIAGMIDSG---DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
            +++V+   +I G    G       A +LFL++  +         +++++    L     
Sbjct: 154 VKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVD 213

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           GKQ+H C  K GF +NVFV  +L+DMY++CG + +++ VFDE+  K  V WN +I+G+A 
Sbjct: 214 GKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFAR 273

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G  EEAL L+ +M+  G     FT+S ++   +   SLE  K  HA +++ G  L    
Sbjct: 274 KGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYV 333

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL-NG 428
            + L+  Y+K G I DA+ VFD+++  +V+S N+++ GY  HG G+EAVELFE+M+L   
Sbjct: 334 GNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVE 393

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           + PN +TFL+VL+ACS +GL + G   F+ M + + ++P+  HY  +++L GR GLLD+A
Sbjct: 394 IEPNDITFLSVLTACSHAGLLDEGLYYFELMKK-YGLEPKLSHYTTVVDLFGRAGLLDQA 452

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
            + I   P +    +W ALL A +++ N E+G +AA+K+  ++P     + +L NIY S+
Sbjct: 453 KSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHTLLSNIYASA 512

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           G+ K+ A+V + ++  GL+  PACSW+E++   H+F + D SH Q  ++Y   + +  +I
Sbjct: 513 GQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYEMWENLNQKI 572

Query: 609 SKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
            + GYVP+   +   VD+QE+ + L YHSEKLA+AF L+NT   + ++I+++ R+C DCH
Sbjct: 573 KEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALAFALLNTKPGSVIRIMKNIRVCGDCH 632

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +AIK +++V  REI+VRD +RFHHF+DG CSC DYW
Sbjct: 633 SAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/583 (38%), Positives = 360/583 (61%), Gaps = 2/583 (0%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           + G    SST  +++       ++ + K + +Y +   F  ++ ++  +L M+ +C ++ 
Sbjct: 203 QAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLF 262

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRAS 241
            AR++F+ + ++N V  + +I G +      +A  L+ D+   +  +    T ATM+RA 
Sbjct: 263 YARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRAC 322

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
           A L  +  GK+LH   +K G   +  V  +LI MY+KCG +++A G  DEM  K TV ++
Sbjct: 323 AQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYS 382

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
            II+G   +GY+E+AL ++ +M+ SG+     T   ++  C+ LA+L+H    H   V  
Sbjct: 383 AIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVR 442

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           GF  D    +A++D YSK G+I  +R +FD+M  +++ISWN +I GYG HG   EA+ LF
Sbjct: 443 GFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLF 502

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
           +++   G++P+ VT +AVLSACS SGL   G   F SMS++  IKPR  HY CM++LL R
Sbjct: 503 QELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLAR 562

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
            G LDEA+  I+  PF     +W ALL ACR + N+E+G+  ++K+  + PE   N+V++
Sbjct: 563 AGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLM 622

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV 601
            NIY+S G+  +AA +    R  G +  P CSW+E+    HVF+ G QSH Q+  I +K+
Sbjct: 623 SNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKL 682

Query: 602 DRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSH 660
             +++++ K GY  +   +L DV+E+E +++L YHSEK+A+AFG++NTS  + + + ++ 
Sbjct: 683 QELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSRILVTKNL 742

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           RIC DCH+AIK I ++T REI VRDASRFHHFKDG+C+C D+W
Sbjct: 743 RICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 128/568 (22%), Positives = 266/568 (46%), Gaps = 63/568 (11%)

Query: 49  KWKRSFQRVECCLMEQGLKPRPKPNKIYTEELKESSLPD---------------TQMKKP 93
            W++  +++      +   P P P+++   +   + L                  Q+ KP
Sbjct: 17  NWRQRHRQI------RSFSPHPHPHRVSDSDAAATQLARYHISRNEIQLARHVFDQIPKP 70

Query: 94  SAGICSQ-IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRV 152
           S  + +  I     +  +++++ L+ +   + G    + T+  L+ AC  L++++  + +
Sbjct: 71  SVVLWNMMIRTYAWSGPFQQSIYLY-LHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLI 129

Query: 153 FSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP--ERNLVSCNMIIAGMIDSG 210
            ++    G   DLY+   +L M+ +CG +  A+ LF+ +   +R++V+ N +IA      
Sbjct: 130 HTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHA 189

Query: 211 DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC 270
            + +       + +      S T  +++        +  GK +H+  ++  F DNV +  
Sbjct: 190 LHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQT 249

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR-DSGVK 329
           AL+DMY+KC  +  A+ +F+ +++K  V W+ +I GY LH    +AL LY +M    G+ 
Sbjct: 250 ALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLN 309

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
               T + ++R C +L  L+  K+ H  +++ G  LD    ++L+  Y+K G +++A   
Sbjct: 310 PTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGF 369

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS----- 444
            D+M+ K+ +S++A+I+G   +G  E+A+ +F QM  +G+ P   T +A+L ACS     
Sbjct: 370 LDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAAL 429

Query: 445 RSGLSERGWEIFQSMSRDHKI-------------------------KPRAMHYACMIELL 479
           + G    G+ + +  + D  I                             + +  MI   
Sbjct: 430 QHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGY 489

Query: 480 GREGLLDEAFAL---IRGAPFKTTKNMWAALLTACRVNGNLELGKF---AAEKLYGMEPE 533
           G  GL  EA +L   ++    K       A+L+AC  +G +  GK+   +  + + ++P 
Sbjct: 490 GIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKP- 548

Query: 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           ++++Y+ ++++   +G L EA   I+ +
Sbjct: 549 RMAHYICMVDLLARAGNLDEAYTFIQRM 576



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 169/355 (47%), Gaps = 24/355 (6%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           +T  KK      + I   VL+    +AL L++ +    G +   +T   ++ AC  L  +
Sbjct: 269 NTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDL 328

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
           +  K++  +M+ +G + D  + N ++ M+ +CG+M +A    DEM  ++ VS + II+G 
Sbjct: 329 KRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGC 388

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
           + +G   +A L+F  +          T   ++ A + L  +  G   H   +  GF ++ 
Sbjct: 389 VQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDT 448

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
            +  A+IDMYSKCG I  ++ +FD M  +  + WNT+I GY +HG   EAL L+ E++  
Sbjct: 449 SICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQAL 508

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG--------FGLDIVANSA----LV 374
           G+K D  T   ++  C+           H+GLV  G           +I    A    +V
Sbjct: 509 GLKPDDVTLIAVLSACS-----------HSGLVTEGKYWFSSMSQNFNIKPRMAHYICMV 557

Query: 375 DFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
           D  ++ G +++A     +M    NV  W AL+A    H   E   ++ +++ L G
Sbjct: 558 DLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLG 612


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/639 (37%), Positives = 364/639 (56%), Gaps = 36/639 (5%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I  L  + R  EA++ +     +   +       ++  AC  LR +   KRV    +  G
Sbjct: 49  ISALTKHGRSLEAIQYYNDFRHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFG 108

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F  D+ + N ++ M+ +C     AR +F+ MP R+++S   + +  ++ G   EA   F 
Sbjct: 109 FCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFR 168

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +        S T ++++ A   L+ +  G+++H   ++ G G NVFVS AL++MY+ C 
Sbjct: 169 KMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCL 228

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALH------------------------------ 310
           SI  AQ VFD MS + TV WN +I  Y L+                              
Sbjct: 229 SIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIG 288

Query: 311 -----GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
                G +E+AL++   M++SG K +  T + ++  CT L SL   KQ H  + RH F  
Sbjct: 289 GCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQ 348

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           D+   +ALV  Y+K G +E +R VF  M  ++ +SWN +I     HG GEEA+ LF +M+
Sbjct: 349 DLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMV 408

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
            +G+RPN VTF  VLS CS S L + G  IF SMSRDH ++P A H++CM+++L R G L
Sbjct: 409 DSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRL 468

Query: 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
           +EA+  I+  P + T   W ALL  CRV  N+ELG+ AA +L+ +E +   NYV+L NI 
Sbjct: 469 EEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNIL 528

Query: 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
            S+    EA+E  + +R +G+   P CSWI+V+ + H F+ GD+S+ Q+ EIYR +D M 
Sbjct: 529 VSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMG 588

Query: 606 LEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICC 664
            ++   GY+P    +L DVD++E + VL  HSEKLAVAFG++N +  + +++ ++ RIC 
Sbjct: 589 EKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICG 648

Query: 665 DCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           DCHNAIK +A + G +I+VRD+ RFHHF+DG+CSC D+W
Sbjct: 649 DCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSCQDFW 687



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 165/317 (52%), Gaps = 8/317 (2%)

Query: 157 LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF 216
           L T   P L ++   + ++   G +  AR LFD++P+ +L +  ++I+ +   G  LEA 
Sbjct: 5   LPTSLPPHLALK--FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAI 62

Query: 217 LLFLDLWEEFSDC---GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
             + D      +C         ++ +A A L  +   K++H  A++ GF  +V +  ALI
Sbjct: 63  QYYNDF--RHKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALI 120

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           DMY KC   E A+ VF+ M  +  + W ++ + Y   G   EAL  + +M  +G + +  
Sbjct: 121 DMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSV 180

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           T S I+  CT L  L+  ++ H  +VR+G G ++  +SALV+ Y+    I  A+ VFD M
Sbjct: 181 TVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSM 240

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             ++ +SWN LI  Y  +   E+ + +F +M+  G+  N+ ++ AV+  C ++G +E+  
Sbjct: 241 SRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKAL 300

Query: 454 EIFQSMSRDHKIKPRAM 470
           E+   M ++   KP  +
Sbjct: 301 EVLSRM-QNSGFKPNQI 316



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 159/337 (47%), Gaps = 35/337 (10%)

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG-VKM 330
            I +YS  G ++ A+ +FD++ +     W  +I+    HG S EA+  Y + R    V+ 
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
           D      + + C  L  + +AK+ H   +R GF  D++  +AL+D Y K    E AR VF
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVF 136

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS-----R 445
           + M  ++VISW ++ + Y N G   EA+  F +M LNG RPN VT  ++L AC+     +
Sbjct: 137 EGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLK 196

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMH-YACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
           SG    G+ +   M  +  +    ++ YA  + +   + + D           +     W
Sbjct: 197 SGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSM--------SRRDTVSW 248

Query: 505 AALLTACRVNGNLE-----LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
             L+TA  +N   E      G+  +E + G+     +++  ++     +G+ ++A EV+ 
Sbjct: 249 NVLITAYFLNKECEKGLSVFGRMMSEGV-GL---NYASWNAVIGGCMQNGRTEKALEVLS 304

Query: 560 TLRRKGLR--------MLPACSWIEV---KKQPHVFL 585
            ++  G +        +LPAC+ +E     KQ H ++
Sbjct: 305 RMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYI 341


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 238/639 (37%), Positives = 371/639 (58%), Gaps = 5/639 (0%)

Query: 69  RPKPNKIYTEELKESSLPDT--QMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGG- 125
           RP P    +  LK +       Q + P+    S   +   N+ + +A+        E   
Sbjct: 11  RPSPCSALSSLLKPTFFASLSLQYQSPNPSFTSSAPQFDNNQTHLKAIPSCSNPHAESTC 70

Query: 126 FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
                S Y +L+ +CI  ++I+  K++ + +   GF  D  +  +++ ++  C  +  AR
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 186 RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
            LFD +P+ N+   N++I G   +G Y  A  L+  +++      + TF  +++A A L 
Sbjct: 131 LLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALS 190

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
            I  G+++H   ++ G+  +VFV  ALIDMY+KCG +  A+ VFD++  +  V WN+++A
Sbjct: 191 AIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLA 250

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
            Y+ +G+ +  L L  EM  +G++    T    I      A+L   ++ H    R  F  
Sbjct: 251 AYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFES 310

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
                +ALVD Y+K G +  AR++F+++  K V+SWNA+I GY  HG   EA++LFE+M 
Sbjct: 311 HDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMN 370

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
               +P+H+TF+ VLSACS  GL E GW  F++M RD+KI P   HY CM++LLG  G L
Sbjct: 371 -RVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRL 429

Query: 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
           DEA+ LI          +W ALL +C+++ N+ELG+ A E+L  +EP+   NYV+L NIY
Sbjct: 430 DEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIY 489

Query: 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
             +GK +  A++ + +  + L+   ACSWIEVK + H FLSGD SH  + EIY +++R+ 
Sbjct: 490 AQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVG 549

Query: 606 LEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICC 664
             + + GY P   ++  DV D+++  ++  HSE+LA+AFGLI+T   T L I ++ RIC 
Sbjct: 550 GLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICE 609

Query: 665 DCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           DCH AIK I+ +T REI VRD +R+HHFKDG+CSCGDYW
Sbjct: 610 DCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/595 (38%), Positives = 360/595 (60%), Gaps = 2/595 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + +AL+LF  +    G      T+ ++++   G+  +    +V + +L +    ++++ N
Sbjct: 217 HTQALQLFAAMR-RAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNN 275

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            +L  + +C  + D RRLFDEMPER+ VS N+IIA    +        LF ++ +   D 
Sbjct: 276 SLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDR 335

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
               +ATM+  +  L  + +GKQ+H+  + +G      +  ALIDMYSKCG ++ A+  F
Sbjct: 336 QVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNF 395

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
              SEK+ + W  +I GY  +G  EEAL L+ +MR +G++ D  TFS II+  + LA + 
Sbjct: 396 SNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIG 455

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             +Q H+ L+R G+   + + S LVD Y+K G +++A   FD+M  +N ISWNA+I+ Y 
Sbjct: 456 LGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYA 515

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
           ++G  + A+++FE ML  G  P+ VTFL+VL+ACS +GL++   + F  M   + I P  
Sbjct: 516 HYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWK 575

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HYAC+I+ LGR G   +   ++   PFK    +W ++L +CR++GN EL + AA+KL+G
Sbjct: 576 EHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFG 635

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           MEP   + YV+L NIY  +G+ ++AA V + +R +G+R     SW+E+K++ + F S D 
Sbjct: 636 MEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDL 695

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINT 648
           +     EI  ++DR+  E+ K GY P+    L  VD E +   L YHSE+LA+AF L+NT
Sbjct: 696 TSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNT 755

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              TP++I+++   C DCH  IK+I+ +  R+I+VRD+ RFHHFKDG+CSCGDYW
Sbjct: 756 PAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 116/407 (28%), Positives = 188/407 (46%), Gaps = 30/407 (7%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           M+ TGF+   Y  N  L   +  G +  AR +FD+MP +N+ S N+I++    SGD   A
Sbjct: 34  MVKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAA 93

Query: 216 FLLFLDLWEEFSDCGS---RTFATMIRASAGLEL-------------ISVGK-------- 251
             LFL      +   +   R  A   R S  L L             ++V          
Sbjct: 94  QHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCT 153

Query: 252 --QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
              LH  A+K G   +VFV   L+D Y K G +  A+ VF EM +K  V +N ++ G + 
Sbjct: 154 VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSK 213

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G   +AL L+  MR +G+   HFTFS I+ +   +A L    Q HA ++R    L++  
Sbjct: 214 EGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFV 273

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
           N++L+DFYSK   ++D R +FD+M  ++ +S+N +IA Y  +      + LF +M   G 
Sbjct: 274 NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF 333

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
               + +  +LS          G +I   +     +    +    +I++  + G+LD A 
Sbjct: 334 DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVL-LGLASEDLLGNALIDMYSKCGMLDAAK 392

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEK 534
           +       K+  + W AL+T    NG  E  L  F+  +  G+ P++
Sbjct: 393 SNFSNRSEKSAIS-WTALITGYVQNGQHEEALQLFSDMRRAGLRPDR 438


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/676 (36%), Positives = 389/676 (57%), Gaps = 25/676 (3%)

Query: 45  LDKRKWKRSFQRVECCLMEQGLKPRPKPNKIYTEELKESS---LPDT---------QMKK 92
           L + K  +  Q+V   L    LK R   + I TE + ES+   LPDT          + K
Sbjct: 28  LQQCKTPKDLQQVHAHL----LKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDK 83

Query: 93  P-SAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKR 151
           P S+     I  L   +    AL LF+ +  E        T+ +++ AC  ++++RE ++
Sbjct: 84  PESSAYNVMIRGLAFKRSPDNALLLFKKMH-EKSVQHDKFTFSSVLKACSRMKALREGEQ 142

Query: 152 VFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGD 211
           V + +L +GF+ + ++ N ++ M+  CG +  AR +FD MPER++V+ N +++G   +G 
Sbjct: 143 VHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGL 202

Query: 212 YLEAFLLF---LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
           + E   LF   L+L  EF D    T  +++ A   L  + +G+ +    +  G   N  +
Sbjct: 203 WDEVVKLFRKILELRIEFDDV---TMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTL 259

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
           + +LIDMY+KCG ++ A+ +FDEM ++  V W+ +I+GYA     +EAL+L++EM+   V
Sbjct: 260 TTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNV 319

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
             +  T   ++  C  L + E  K  H  + +    L +   + L+DFY+K G I+ +  
Sbjct: 320 YPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVE 379

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           VF +M  KNV +W ALI G  N+G G+ A+E F  ML N ++PN VTF+ VLSACS + L
Sbjct: 380 VFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACL 439

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
            ++G  +F SM RD  I+PR  HY CM+++LGR G L+EA+  I   PF     +W  LL
Sbjct: 440 VDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLL 499

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
            +CR + N+E+ + + E +  +EP    +Y++L N Y   G++++A  V   ++ K ++ 
Sbjct: 500 ASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKK 559

Query: 569 LPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPE-EKTLLPDVDEQ 627
           +P CS IE+    H F S D  H  +KEI+  +D+MM +I + GYVP  +   L   +E 
Sbjct: 560 IPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEES 619

Query: 628 EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDAS 687
           ++  +S+HSEKLA+A+GLI TS  T ++I ++ R+C DCHNA K I+ V  R I+VRD +
Sbjct: 620 KETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDCHNATKFISQVFERMIIVRDRN 679

Query: 688 RFHHFKDGMCSCGDYW 703
           RFHHFKDG+CSC DYW
Sbjct: 680 RFHHFKDGLCSCNDYW 695


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/601 (38%), Positives = 374/601 (62%), Gaps = 4/601 (0%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N+ + E+L+LF  +   G F   + T+ +++ AC+GL      K V      T +  +
Sbjct: 222 VENECFEESLKLFSRMRIVG-FKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEE 280

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           L++   ++ ++++ G + DA ++F+EMP+ +++  + +IA    S    EA  +F  +  
Sbjct: 281 LFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRR 340

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                   T A++++A A L  + +G Q+H   +K+G   NVFVS AL+DMY+KCG +E+
Sbjct: 341 GLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMEN 400

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           +  +F E    T V WNT+I GY   G  E+AL L+ +M +  V+    T+S ++R C  
Sbjct: 401 SLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAG 460

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           +A+LE   Q H+  V+  +  + V  +AL+D Y+K G I+DAR VFD +   + +SWNA+
Sbjct: 461 IAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAM 520

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I+GY  HG   EA++ FE ML    +P+ VTF+ +LSACS +GL +RG   F+SM  ++ 
Sbjct: 521 ISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYD 580

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           I+P A HY CM+ LLGR G LD+A  L+   PF+ +  +W ALL+AC ++ ++ELG+ +A
Sbjct: 581 IEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISA 640

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
           +++  +EPE  + +V+L NIY ++ +    A +  +++RKG+R  P  SWIE + + H F
Sbjct: 641 QRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYF 700

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD--EQEQRVLSYHSEKLAVA 642
             GD SH  TK I   ++ + ++    GYVP+  ++L DV+  ++EQR L  HSE+LA+A
Sbjct: 701 SVGDTSHPDTKLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQR-LWVHSERLALA 759

Query: 643 FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           +GLI T   +PL+I+++ RIC DCH AIKLI+ +  R+I++RD +RFHHF +G+CSCGDY
Sbjct: 760 YGLIRTPSISPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDY 819

Query: 703 W 703
           W
Sbjct: 820 W 820



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 103/312 (33%), Positives = 161/312 (51%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y +L+ +CI        K +   ++  G   DL+  N +L  +V+   + DA +LFDEMP
Sbjct: 47  YGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMP 106

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           +RN VS   +I G      + EA  LF  L  E  +     F+T+++     E   +G  
Sbjct: 107 DRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFS 166

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H+C  K+GF  + FV  ALID YS CG  E A+ VFD +  K  V W  ++A Y  +  
Sbjct: 167 VHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENEC 226

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            EE+L L+  MR  G K ++FTF+ +++ C  L      K  H    +  +  ++     
Sbjct: 227 FEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVE 286

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D Y K G ++DA  VF++M   +VI W+ +IA Y    + EEA+E+F +M    + PN
Sbjct: 287 LIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPN 346

Query: 433 HVTFLAVLSACS 444
             T  ++L AC+
Sbjct: 347 QFTLASLLQACA 358



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 114/274 (41%), Gaps = 38/274 (13%)

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
           S  + + + +  +++ C R       K  H  +++ G  LD+ AN+ L++FY K+  + D
Sbjct: 38  SSPEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPD 97

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS---- 441
           A  +FD+M  +N +S+  LI GY    R  EA+ LF ++   G   N   F  VL     
Sbjct: 98  AAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVS 157

Query: 442 -----------AC--------------------SRSGLSERGWEIFQSMSRDHKIKPRAM 470
                      AC                    S  G +E   ++F ++     +    M
Sbjct: 158 AEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGM 217

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
             AC +E    E  L + F+ +R   FK     +A++L AC       +GK      +  
Sbjct: 218 -VACYVENECFEESL-KLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKT 275

Query: 531 EP-EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
              E+L   V L+++Y  SG + +A +V   + +
Sbjct: 276 SYLEELFVGVELIDLYIKSGDVDDALQVFEEMPK 309


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/598 (38%), Positives = 361/598 (60%), Gaps = 3/598 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISAC-IGLRSIREVKRVFSYMLSTGFEPDL 165
           N   ++ALEL   ++ EG      +    L +A  +GL  +   K +  Y +  GF   +
Sbjct: 226 NGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVG--KSIHGYAIRAGFAKLV 283

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            +   +  M+ +CG +  AR +FD M ++ +VS N ++ G + +G+  +A  +F  + EE
Sbjct: 284 NISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEE 343

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
             D    T    + A A L  +  GK +H    ++  G ++ V  +LI MYSKC  ++ A
Sbjct: 344 GIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIA 403

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
             +F+ ++ +T V WN +I GYA +G   EAL+ + EM+  G+K D FT   +I     L
Sbjct: 404 SDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAEL 463

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           +   HAK  H  ++R     +I   +ALVD YSK G I  AR +FD +  ++VI+WNA+I
Sbjct: 464 SVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMI 523

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
            GYG HG G  A++LF++M    + PN +T+L+V+SACS SGL + G   F+SM +D+ +
Sbjct: 524 DGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGL 583

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
           +P   HY  M++LLGR G + EA+  I   P      ++ A   AC+++ N+E+G+ AA+
Sbjct: 584 EPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAK 643

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
           KL+ + P++   +V+L NIY S+ K  + AEV +T+ +KGL+  P CS +E++ + H F 
Sbjct: 644 KLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFY 703

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGL 645
           SG  +H Q+K IY  ++ ++ EI   GYVP+   +L   D+ ++++L+ HSEKLA+AFGL
Sbjct: 704 SGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLILDVEDDVQEQLLNSHSEKLAIAFGL 763

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +NTS  T + + ++ R+C DCHNA K I++VTGREI+VRD  RFHHFK+G+CSCGDYW
Sbjct: 764 LNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 135/468 (28%), Positives = 232/468 (49%), Gaps = 41/468 (8%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            +  L+  C     ++  K +   +++  F  +++    V+ M+ +C  + DA ++FD M
Sbjct: 149 NFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRM 208

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           PER+LVS N IIAG   +G   +A  L L + +E     S T  T++ A+A + L+ VGK
Sbjct: 209 PERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGK 268

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            +H  A++ GF   V +S AL DMYSKCGS+E A+ +FD M +KT V WN+++ GY  +G
Sbjct: 269 SIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNG 328

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             E+A+ ++ +M + G+     T    +  C  L  LE  K  H  + +   G DI   +
Sbjct: 329 EPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMN 388

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           +L+  YSK  R++ A  +F+ +  +  +SWNA+I GY  +GR  EA+  F +M   GM+P
Sbjct: 389 SLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKP 448

Query: 432 NHVTFLAVLSAC-----------------------------------SRSGLSERGWEIF 456
           +  T ++V+ A                                    S+ G      ++F
Sbjct: 449 DSFTMVSVIPALAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLF 508

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
             +S  H I   AM        LGR  L  + F  ++    +     + ++++AC  +G 
Sbjct: 509 DMISDRHVITWNAMIDGYGTHGLGRAAL--DLFDKMKKGAVEPNDITYLSVISACSHSGL 566

Query: 517 LELG--KFAAEKL-YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           ++ G   F + K  YG+EP  + +Y  ++++   +G++KEA + I  +
Sbjct: 567 VDEGLRHFKSMKQDYGLEPS-MDHYGAMVDLLGRAGRIKEAWDFIENM 613



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 201/408 (49%), Gaps = 22/408 (5%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           S++E+ ++   ++  G   +   + +++ +  + G + +A R+F+ + ++     + ++ 
Sbjct: 61  SMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLK 120

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGS--RTFATMIRASAGLELISVGKQLHSCALKMGF 262
           G   +   LE  L FL     + D       F  +++       +  GK++H   +   F
Sbjct: 121 GYAKNSS-LETALAFL-CRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSF 178

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             NVF    +++MY+KC  I+DA  +FD M E+  V WNTIIAG++ +G++++AL+L   
Sbjct: 179 AANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLR 238

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M+D G + D  T   ++     +  L   K  H   +R GF   +  ++AL D YSK G 
Sbjct: 239 MQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGS 298

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           +E AR +FD M  K V+SWN+++ GY  +G  E+A+ +FE+ML  G+ P  VT +  L A
Sbjct: 299 VETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHA 358

Query: 443 CSRSGLSERGWEIFQ-----SMSRDHKIKPR--AMHYACMIELLGREGLLDEAFALIRGA 495
           C+  G  ERG  + +     ++  D  +     +M+  C      R  +  + F  + G 
Sbjct: 359 CADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKC-----KRVDIASDIFNNLNG- 412

Query: 496 PFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVL 541
               T   W A++     NG +   L  F+  K  GM+P+  +   V+
Sbjct: 413 ---RTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVI 457


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/595 (38%), Positives = 360/595 (60%), Gaps = 2/595 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + +AL+LF  +    G      T+ ++++   G+  +    +V + +L +    ++++ N
Sbjct: 217 HTQALQLFAAMR-RAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNN 275

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            +L  + +C  + D RRLFDEMPER+ VS N+IIA    +        LF ++ +   D 
Sbjct: 276 SLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDR 335

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
               +ATM+  +  L  + +GKQ+H+  + +G      +  ALIDMYSKCG ++ A+  F
Sbjct: 336 QVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNF 395

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
              SEK+ + W  +I GY  +G  EEAL L+ +MR +G++ D  TFS II+  + LA + 
Sbjct: 396 SNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIG 455

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             +Q H+ L+R G+   + + S LVD Y+K G +++A   FD+M  +N ISWNA+I+ Y 
Sbjct: 456 LGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYA 515

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
           ++G  + A+++FE ML  G  P+ VTFL+VL+ACS +GL++   + F  M   + I P  
Sbjct: 516 HYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWK 575

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HYAC+I+ LGR G   +   ++   PFK    +W ++L +CR++GN EL + AA+KL+G
Sbjct: 576 EHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFG 635

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           MEP   + YV+L NIY  +G+ ++AA V + +R +G+R     SW+E+K++ + F S D 
Sbjct: 636 MEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDL 695

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINT 648
           +     EI  ++DR+  E+ K GY P+    L  VD E +   L YHSE+LA+AF L+NT
Sbjct: 696 TSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNT 755

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              TP++I+++   C DCH  IK+I+ +  R+I+VRD+ RFHHFKDG+CSCGDYW
Sbjct: 756 PAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 189/409 (46%), Gaps = 30/409 (7%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           M+ TGF+   Y  N  L   +  G +  AR +FD+MP +N+ S N+I++    SGD   A
Sbjct: 34  MVKTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAA 93

Query: 216 FLLFLDLWEEFSDCGS---RTFATMIRASAGLEL-------------ISVG--------- 250
             LFL      +   +   R  A   R S  L L             ++V          
Sbjct: 94  QHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCT 153

Query: 251 -KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
              LH  A+K G   +VFV   L+D Y K G +  A+ VF EM +K  V +N ++ G + 
Sbjct: 154 VPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSK 213

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G   +AL L+  MR +G+   HFTFS I+ +   +A L    Q HA ++R    L++  
Sbjct: 214 EGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFV 273

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
           N++L+DFYSK   ++D R +FD+M  ++ +S+N +IA Y  +      + LF +M   G 
Sbjct: 274 NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF 333

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
               + +  +LS          G +I   +     +    +    +I++  + G+LD A 
Sbjct: 334 DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVL-LGLASEDLLGNALIDMYSKCGMLDAAK 392

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLS 536
           +       K+  + W AL+T    NG  E  L  F+  +  G+ P++ +
Sbjct: 393 SNFSNRSEKSAIS-WTALITGYVQNGQHEEALQLFSDMRRAGLRPDRAT 440


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/617 (38%), Positives = 360/617 (58%), Gaps = 5/617 (0%)

Query: 91  KKPSAGICSQ---IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
           K P + + S    I   VLN     A+EL   +++ G       T  +++ AC G  +  
Sbjct: 262 KMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSG-LVPNVFTLSSILKACSGAGAFD 320

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
             +++  +M+    + D Y+   ++ M+ +   + DAR++FD M  R+L+ CN +I+G  
Sbjct: 321 LGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCS 380

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
             G + EA  LF +L +E       T A +++++A LE  S  +Q+H+ A+K+GF  +  
Sbjct: 381 HGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAH 440

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
           V   LID Y KC  + DA  VF+E S    +   ++I   +   + E A+ L+ EM   G
Sbjct: 441 VVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKG 500

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           ++ D F  S ++  C  L++ E  KQ HA L++  F  D  A +ALV  Y+K G IEDA 
Sbjct: 501 LEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAE 560

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
             F  +  + V+SW+A+I G   HG G+ A+ELF +M+  G+ PNH+T  +VL AC+ +G
Sbjct: 561 LAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAG 620

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
           L +     F SM     I     HY+CMI+LLGR G LD+A  L+   PF+   ++W AL
Sbjct: 621 LVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGAL 680

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           L A RV+ + ELGK AAEKL+ +EPEK   +V+L N Y S+G   E A+V + ++   ++
Sbjct: 681 LGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIK 740

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ 627
             PA SWIEVK + H F+ GD+SH  TKEIY K+  +   +SK G+VP     L D+D  
Sbjct: 741 KEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRS 800

Query: 628 EQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
           E+  +LS+HSE+LAVAF L++T    P+++ ++ RIC DCH A K I+ +  REI++RD 
Sbjct: 801 EKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDI 860

Query: 687 SRFHHFKDGMCSCGDYW 703
           +RFHHF+DG CSCGDYW
Sbjct: 861 NRFHHFRDGTCSCGDYW 877



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 120/403 (29%), Positives = 203/403 (50%), Gaps = 11/403 (2%)

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
           RN ++  + +C     ARR+FDE+P+   VS + ++    ++G    A   F  +  E  
Sbjct: 40  RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV 99

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
            C       +++      L   G Q+H+ A+  GFG +VFV+ AL+ MY   G ++DA+ 
Sbjct: 100 CCNEFALPVVLKCVPDARL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARR 156

Query: 288 VFDEM-SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
           VF+E  SE+  V WN +++ Y  +    +A+ ++ EM  SG++   F FS ++  CT   
Sbjct: 157 VFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSR 216

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           ++E  +Q HA +VR G+  D+   +ALVD Y K GR++ A  +F+KM   +V+SWNALI+
Sbjct: 217 NIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALIS 276

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           G   +G    A+EL  QM  +G+ PN  T  ++L ACS +G  + G +I   M + +   
Sbjct: 277 GCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADS 336

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
              +    ++++  +   LD+A  +     F     +  AL++ C   G  +    A   
Sbjct: 337 DDYIGVG-LVDMYAKNHFLDDARKVFDWM-FHRDLILCNALISGCSHGGRHDE---ALSL 391

Query: 527 LYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
            Y +  E L  N   L  +  S+  L EAA   R +    +++
Sbjct: 392 FYELRKEGLGVNRTTLAAVLKSTASL-EAASTTRQVHALAVKI 433



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 167/295 (56%), Gaps = 1/295 (0%)

Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM-PERNLVSCNMIIAGMIDS 209
           +V +  ++TGF  D+++ N ++ M+   G M DARR+F+E   ERN VS N +++  + +
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
               +A  +F ++           F+ ++ A  G   I  G+Q+H+  ++MG+  +VF +
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTA 240

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            AL+DMY K G ++ A  +F++M +   V WN +I+G  L+G+   A++L  +M+ SG+ 
Sbjct: 241 NALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLV 300

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            + FT S I++ C+   + +  +Q H  +++     D      LVD Y+K   ++DAR V
Sbjct: 301 PNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKV 360

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           FD M  +++I  NALI+G  + GR +EA+ LF ++   G+  N  T  AVL + +
Sbjct: 361 FDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTA 415



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 236/466 (50%), Gaps = 18/466 (3%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N +  +A+++F  + + G        +  +++AC G R+I   ++V + ++  G++ D
Sbjct: 178 VKNDQCGDAIQVFGEMVWSG-IQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           ++  N ++ M+++ G +  A  +F++MP+ ++VS N +I+G + +G    A  L L +  
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                   T +++++A +G     +G+Q+H   +K     + ++   L+DMY+K   ++D
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+ VFD M  +  +  N +I+G +  G  +EAL L+YE+R  G+ ++  T + +++    
Sbjct: 357 ARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTAS 416

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           L +    +Q HA  V+ GF  D    + L+D Y K   + DA  VF++    ++I+  ++
Sbjct: 417 LEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSM 476

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I        GE A++LF +ML  G+ P+     ++L+AC+     E+G ++       H 
Sbjct: 477 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHA-----HL 531

Query: 465 IKPRAMHYA----CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
           IK + M  A     ++    + G +++A       P +   + W+A++     +G+   G
Sbjct: 532 IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVS-WSAMIGGLAQHGH---G 587

Query: 521 KFAAEKLYGMEPEKLS-NYVVLLNIY---NSSGKLKEAAEVIRTLR 562
           K A E    M  E ++ N++ + ++    N +G + EA     +++
Sbjct: 588 KRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMK 633


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/593 (37%), Positives = 362/593 (61%), Gaps = 2/593 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +A +LF  ++ EG F     ++ +++  C    ++   K V +  ++TG   D+ +   +
Sbjct: 246 KAFQLFYRMQQEG-FKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATAL 304

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M++ CG +  ARR+FD+M  R++VS  ++I G  ++ +  +AF LF  + EE      
Sbjct: 305 IRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDR 364

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T+  +I A A    +S+ +++HS  ++ GFG ++ V  AL+ MY+KCG+I+DA+ VFD 
Sbjct: 365 ITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDA 424

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           MS +  V W+ +I  Y  +G  EEA + ++ M+ + V+ D  T+  ++  C  L +L+  
Sbjct: 425 MSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLG 484

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
            + +   ++      I   +AL++   K G IE AR++F+ M+ ++V++WN +I GY  H
Sbjct: 485 MEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLH 544

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G   EA++LF++ML    RPN VTF+ VLSACSR+G  E G   F  +     I P    
Sbjct: 545 GNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMEL 604

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           Y CM++LLGR G LDEA  LI   P K   ++W+ LL ACR+ GNL++ + AAE+    E
Sbjct: 605 YGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSE 664

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P   + YV L ++Y ++G  +  A+V + +  +G+R    C+WIEV+ + H F+  D+SH
Sbjct: 665 PYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSH 724

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSD 650
            Q  EIY ++ R+M  I + GY+P  + +L +V EQE +  +SYHSEKLA+A+G+++   
Sbjct: 725 PQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLPS 784

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             P++I ++ R+C DCH+A K I+ VTGREI+ RDASRFHHFK+G+CSCGDYW
Sbjct: 785 GAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  216 bits (550), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 123/353 (34%), Positives = 201/353 (56%), Gaps = 2/353 (0%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +EA  LF  +  E   +    T+  ++ AC     ++  K   + ++  GF  D  +   
Sbjct: 144 KEAFALFRQMVDEA-MEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTA 202

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ M+V+ G M  AR++FD + +R++ + N++I G   SGD  +AF LF  + +E     
Sbjct: 203 LVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPN 262

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             +F +++   +  E ++ GK +H+  +  G  D+V V+ ALI MY  CGSIE A+ VFD
Sbjct: 263 RISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFD 322

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           +M  +  V W  +I GYA +   E+A  L+  M++ G++ D  T+  II  C   A L  
Sbjct: 323 KMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSL 382

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
           A++ H+ +VR GFG D++ ++ALV  Y+K G I+DAR VFD M  ++V+SW+A+I  Y  
Sbjct: 383 AREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVE 442

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF-QSMSRD 462
           +G GEEA E F  M  N + P+ VT++ +L+AC   G  + G EI+ Q++  D
Sbjct: 443 NGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKAD 495



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/437 (29%), Positives = 220/437 (50%), Gaps = 5/437 (1%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           EG   + S TY  L   C+ LR     K+V  +++ +G + ++Y  N ++ +H  CG M+
Sbjct: 54  EGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNML 113

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
           +AR+ FD +  + +V+ N IIAG    G   EAF LF  + +E  +    TF  ++ A +
Sbjct: 114 EARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACS 173

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
               + +GK+ H+  +K+GF  +  +  AL+ MY K GS++ A+ VFD + ++    +N 
Sbjct: 174 SPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNV 233

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I GYA  G  E+A  L+Y M+  G K +  +F  I+  C+   +L   K  HA  +  G
Sbjct: 234 MIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTG 293

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
              D+   +AL+  Y   G IE AR VFDKM  ++V+SW  +I GY  +   E+A  LF 
Sbjct: 294 LVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFA 353

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
            M   G++P+ +T++ +++AC+ S       EI   + R        +    ++ +  + 
Sbjct: 354 TMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRA-GFGTDLLVDTALVHMYAKC 412

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVV 540
           G + +A  +      +   + W+A++ A   NG  E     F   K   +EP+ ++ Y+ 
Sbjct: 413 GAIKDARQVFDAMSRRDVVS-WSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVT-YIN 470

Query: 541 LLNIYNSSGKLKEAAEV 557
           LLN     G L    E+
Sbjct: 471 LLNACGHLGALDLGMEI 487



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/388 (30%), Positives = 188/388 (48%), Gaps = 47/388 (12%)

Query: 199 CNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCAL 258
           C  I  G + + D L        L E  +   SRT+  + +    L    +GKQ+    +
Sbjct: 35  CRSIFTGQVGANDVLH------RLGEGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHII 88

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
           + G   N++    LI ++S CG++ +A+  FD +  KT V WN IIAGYA  G+ +EA  
Sbjct: 89  QSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFA 148

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378
           L+ +M D  ++    TF +++  C+  A L+  K+ HA +++ GF  D    +ALV  Y 
Sbjct: 149 LFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYV 208

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
           K G ++ AR VFD +  ++V ++N +I GY   G GE+A +LF +M   G +PN ++FL+
Sbjct: 209 KGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLS 268

Query: 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE---AFALIR-- 493
           +L  CS        W              +A+H  CM       GL+D+   A ALIR  
Sbjct: 269 ILDGCSTP--EALAW-------------GKAVHAQCM-----NTGLVDDVRVATALIRMY 308

Query: 494 -------GA--PFKTTKNM----WAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNY 538
                  GA   F   K      W  ++     N N+E   G FA  +  G++P++++ Y
Sbjct: 309 MGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRIT-Y 367

Query: 539 VVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           + ++N   SS  L  A E+   + R G 
Sbjct: 368 IHIINACASSADLSLAREIHSQVVRAGF 395


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/594 (38%), Positives = 371/594 (62%), Gaps = 3/594 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +A+ LF  ++ + GF     T+ A+++A I +  I   ++V S+++   F  ++++ N +
Sbjct: 223 DAINLFFKMQ-DLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANAL 281

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L  + +   +++AR+LF EMPE + +S N++I     +G   E+  LF +L     D   
Sbjct: 282 LDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQ 341

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
             FAT++  +A    + +G+Q+HS A+       V V  +L+DMY+KC    +A  +F +
Sbjct: 342 FPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFAD 401

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           ++ +++V W  +I+GY   G  E+ L L+ EM  + +  D  T++ I+R C  LASL   
Sbjct: 402 LAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANLASLTLG 461

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           KQ H+ ++R G   ++ + SALVD Y+K G I++A  +F +M  +N +SWNALI+ Y  +
Sbjct: 462 KQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQN 521

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G G  A+  FEQM+ +G++PN V+FL++L ACS  GL E G + F SM++ +K++PR  H
Sbjct: 522 GDGGHALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREH 581

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           YA M+++L R G  DEA  L+   PF+  + MW+++L +CR++ N EL   AA++L+ M+
Sbjct: 582 YASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMK 641

Query: 532 P-EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
                + YV + NIY ++G+     +V + LR +G+R +PA SW+E+K++ HVF + D S
Sbjct: 642 GLRDAAPYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTS 701

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTS 649
           H QTKEI RK+D +  ++ + GY P+    L +VDE+ +   L YHSE++A+AF LI+T 
Sbjct: 702 HPQTKEITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESLKYHSERIAIAFALISTP 761

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             +P+ ++++ R C DCH AIK+I+ +  REI VRD+SRFHHF DG CSC DYW
Sbjct: 762 KGSPILVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFTDGSCSCKDYW 815



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 127/482 (26%), Positives = 226/482 (46%), Gaps = 69/482 (14%)

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
           R  + V + M+ TGF+P+    N  +  H++ G +  AR+LFDEMP +N++S N +I G 
Sbjct: 24  RHFQHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGY 83

Query: 207 IDSGD-------------------------------YLEAFLLFLDLWEEFSDCGSRTFA 235
           + SG+                               +LEAF LF D+          T A
Sbjct: 84  LKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLA 143

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
           T++      E ++   Q+H   +K+G+   + V  +L+D Y K  S+  A  +F  M+EK
Sbjct: 144 TLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEK 203

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             V +N ++ GY+  G++ +A++L+++M+D G +   FTF+ ++    ++  +E  +Q H
Sbjct: 204 DNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVH 263

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
           + +V+  F  ++   +AL+DFYSK  RI +AR +F +M   + IS+N LI     +GR E
Sbjct: 264 SFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVE 323

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF-QSMSRD------------ 462
           E++ELF ++           F  +LS  + S   E G +I  Q++  D            
Sbjct: 324 ESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLV 383

Query: 463 ------------HKIKPRAMH-----YACMIELLGREGLLDEAFAL---IRGAPFKTTKN 502
                       ++I     H     +  +I    ++GL ++   L   +  A       
Sbjct: 384 DMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSA 443

Query: 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYV---VLLNIYNSSGKLKEAAEVIR 559
            +A++L AC    +L LGK    ++  +    LSN      L+++Y   G +KEA ++ +
Sbjct: 444 TYASILRACANLASLTLGKQLHSRI--IRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQ 501

Query: 560 TL 561
            +
Sbjct: 502 EM 503



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 57/146 (39%), Gaps = 41/146 (28%)

Query: 338 IIRICTRLASLE----------HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           +I+ CTR   L           H +   A +++ GF  +    +  V  + + G +  AR
Sbjct: 3   LIKSCTRKTHLHNLGTLTSPKRHFQHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAAR 62

Query: 388 HVFDKMLCKNVIS-------------------------------WNALIAGYGNHGRGEE 416
            +FD+M  KNVIS                               W  LI GY  H R  E
Sbjct: 63  KLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLE 122

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSA 442
           A  LF  M  +GM P+H+T   +LS 
Sbjct: 123 AFNLFADMCRHGMVPDHITLATLLSG 148


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/617 (38%), Positives = 360/617 (58%), Gaps = 5/617 (0%)

Query: 91  KKPSAGICSQ---IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
           K P + + S    I   VLN     A+EL   +++ G       T  +++ AC G  +  
Sbjct: 262 KMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSG-LVPNVFTLSSILKACSGAGAFD 320

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
             +++  +M+    + D Y+   ++ M+ +   + DAR++FD M  R+L+ CN +I+G  
Sbjct: 321 LGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCS 380

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
             G + EA  LF +L +E       T A +++++A LE  S  +Q+H+ A+K+GF  +  
Sbjct: 381 HGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAH 440

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
           V   LID Y KC  + DA  VF+E S    +   ++I   +   + E A+ L+ EM   G
Sbjct: 441 VVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKG 500

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           ++ D F  S ++  C  L++ E  KQ HA L++  F  D  A +ALV  Y+K G IEDA 
Sbjct: 501 LEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAE 560

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
             F  +  + V+SW+A+I G   HG G+ A+ELF +M+  G+ PNH+T  +VL AC+ +G
Sbjct: 561 LAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAG 620

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
           L +     F SM     I     HY+CMI+LLGR G LD+A  L+   PF+   ++W AL
Sbjct: 621 LVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGAL 680

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           L A RV+ + ELGK AAEKL+ +EPEK   +V+L N Y S+G   E A+V + ++   ++
Sbjct: 681 LGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIK 740

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ 627
             PA SWIEVK + H F+ GD+SH  TKEIY K+  +   +SK G+VP     L D+D  
Sbjct: 741 KEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRS 800

Query: 628 EQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
           E+  +LS+HSE+LAVAF L++T    P+++ ++ RIC DCH A K I+ +  REI++RD 
Sbjct: 801 EKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDI 860

Query: 687 SRFHHFKDGMCSCGDYW 703
           +RFHHF+DG CSCGDYW
Sbjct: 861 NRFHHFRDGTCSCGDYW 877



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 120/403 (29%), Positives = 202/403 (50%), Gaps = 11/403 (2%)

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
           RN ++  + +C     ARR FDE+P+   VS + ++    ++G    A   F  +  E  
Sbjct: 40  RNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGV 99

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
            C       +++      L   G Q+H+ A+  GFG +VFV+ AL+ MY   G ++DA+ 
Sbjct: 100 CCNEFALPVVLKCVPDARL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARR 156

Query: 288 VFDEM-SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
           VF+E  SE+  V WN +++ Y  +    +A+ ++ EM  SG++   F FS ++  CT   
Sbjct: 157 VFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSR 216

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           ++E  +Q HA +VR G+  D+   +ALVD Y K GR++ A  +F+KM   +V+SWNALI+
Sbjct: 217 NIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALIS 276

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           G   +G    A+EL  QM  +G+ PN  T  ++L ACS +G  + G +I   M + +   
Sbjct: 277 GCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADS 336

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
              +    ++++  +   LD+A  +     F     +  AL++ C   G  +    A   
Sbjct: 337 DDYIGVG-LVDMYAKNHFLDDARKVFDWM-FHRDLILCNALISGCSHGGRHDE---ALSL 391

Query: 527 LYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
            Y +  E L  N   L  +  S+  L EAA   R +    +++
Sbjct: 392 FYELRKEGLGVNRTTLAAVLKSTASL-EAASTTRQVHALAVKI 433



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 167/295 (56%), Gaps = 1/295 (0%)

Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM-PERNLVSCNMIIAGMIDS 209
           +V +  ++TGF  D+++ N ++ M+   G M DARR+F+E   ERN VS N +++  + +
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
               +A  +F ++           F+ ++ A  G   I  G+Q+H+  ++MG+  +VF +
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTA 240

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            AL+DMY K G ++ A  +F++M +   V WN +I+G  L+G+   A++L  +M+ SG+ 
Sbjct: 241 NALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLV 300

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            + FT S I++ C+   + +  +Q H  +++     D      LVD Y+K   ++DAR V
Sbjct: 301 PNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKV 360

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           FD M  +++I  NALI+G  + GR +EA+ LF ++   G+  N  T  AVL + +
Sbjct: 361 FDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTA 415



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 236/466 (50%), Gaps = 18/466 (3%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N +  +A+++F  + + G        +  +++AC G R+I   ++V + ++  G++ D
Sbjct: 178 VKNDQCGDAIQVFGEMVWSG-IQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKD 236

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           ++  N ++ M+++ G +  A  +F++MP+ ++VS N +I+G + +G    A  L L +  
Sbjct: 237 VFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                   T +++++A +G     +G+Q+H   +K     + ++   L+DMY+K   ++D
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+ VFD M  +  +  N +I+G +  G  +EAL L+YE+R  G+ ++  T + +++    
Sbjct: 357 ARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTAS 416

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           L +    +Q HA  V+ GF  D    + L+D Y K   + DA  VF++    ++I+  ++
Sbjct: 417 LEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSM 476

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I        GE A++LF +ML  G+ P+     ++L+AC+     E+G ++       H 
Sbjct: 477 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHA-----HL 531

Query: 465 IKPRAMHYA----CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
           IK + M  A     ++    + G +++A       P +   + W+A++     +G+   G
Sbjct: 532 IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVS-WSAMIGGLAQHGH---G 587

Query: 521 KFAAEKLYGMEPEKLS-NYVVLLNIY---NSSGKLKEAAEVIRTLR 562
           K A E    M  E ++ N++ + ++    N +G + EA     +++
Sbjct: 588 KRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMK 633


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/633 (35%), Positives = 371/633 (58%), Gaps = 40/633 (6%)

Query: 109  RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
            +  EALEL+  ++ E G      T+  L++ C   R+  + +++ ++++      ++ + 
Sbjct: 458  KAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVE 517

Query: 169  NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF--LDLWEEF 226
              ++ M+  CG +  A+ +F+ M ERN  S N +I G   +G+  EA  LF  + L    
Sbjct: 518  TELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIK 577

Query: 227  SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE--- 283
             DC S   ++M+ +   L     G++LH+  ++    +   +   L+DMY+KCGS++   
Sbjct: 578  PDCFS--LSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAW 635

Query: 284  ----------------------------DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
                                        DA+ +FD+M ++ T  WN+I+AGYA  G  +E
Sbjct: 636  KVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKE 695

Query: 316  ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF-GLDIVANSALV 374
            + + + EM +S ++ D  T   I+ +C+ L +LEH  Q H+ +++ GF    +V  +ALV
Sbjct: 696  SFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALV 755

Query: 375  DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
            D YSK G I  AR VFD M  KN++SWNA+I+GY  HG  +EA+ L+E+M   GM PN V
Sbjct: 756  DMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEV 815

Query: 435  TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
            TFLA+LSACS +GL E G  IF SM  D+ I+ +A HY CM++LLGR G L++A   +  
Sbjct: 816  TFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEK 875

Query: 495  APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
             P +   + W ALL ACRV+ ++++G+ AA++L+ ++P+    YV++ NIY ++G+ KE 
Sbjct: 876  MPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEV 935

Query: 555  AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
             ++ + ++ KG++  P  SWIE+  +  +F +G ++H +T+EIY  +  + L+    GY+
Sbjct: 936  EDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYI 995

Query: 615  PEEKTLLPDVDE----QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
            P+   +L +V +    +E+  L  HSE+LA++ GLI+    + +++ ++ RIC DCH A 
Sbjct: 996  PDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTAT 1055

Query: 671  KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            K I+ +TGR I+ RD +RFHHF++G CSCGDYW
Sbjct: 1056 KFISKITGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 210/361 (58%), Gaps = 2/361 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+ + +  C  LRS    K+V S +++ GF+ D ++ N ++ M+ +C       ++FDEM
Sbjct: 278 TFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEM 337

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            ERN V+ N II+     G + +A +LFL + E           +++ ASAGL  I  G+
Sbjct: 338 GERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGR 397

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           +LH   ++     ++ +  AL+DMYSKCG +E+A  VF  + E+  V +N ++AGY   G
Sbjct: 398 ELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEG 457

Query: 312 YSEEALDLYYEMR-DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
            +EEAL+LY++M+ + G++ D FTF+ ++ +C    +    +Q HA L+R     +I+  
Sbjct: 458 KAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVE 517

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           + LV  YS+ GR+  A+ +F++M  +N  SWN++I GY  +G  +EA+ LF+QM LNG++
Sbjct: 518 TELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIK 577

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           P+  +  ++LS+C     S++G E+   + R+  ++   +    ++++  + G +D A+ 
Sbjct: 578 PDCFSLSSMLSSCVSLSDSQKGRELHNFIVRN-TMEEEGILQVVLVDMYAKCGSMDYAWK 636

Query: 491 L 491
           +
Sbjct: 637 V 637



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 136/431 (31%), Positives = 223/431 (51%), Gaps = 8/431 (1%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           Y E L L+  +   G F     T+ ++I ACI +  +  V+++ S ++  G   +L++  
Sbjct: 156 YMEVLRLYGRMRGSGNFS-DKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGG 214

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++  + R G M DA    DE+   ++V+ N +IAG +    + EA+ +F D   +   C
Sbjct: 215 ALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIF-DRMLKIGVC 273

Query: 230 GSR-TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               TFA+ +R    L     GKQ+HS  +  GF  + FV  ALIDMY+KC   E    V
Sbjct: 274 PDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKV 333

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FDEM E+  V WN+II+  A  G+  +AL L+  M++SG K + F    I+     LA +
Sbjct: 334 FDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADI 393

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
              ++ H  LVR+    DI+  SALVD YSK G +E+A  VF  +L +N +S+NAL+AGY
Sbjct: 394 GKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGY 453

Query: 409 GNHGRGEEAVELFEQMLL-NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
              G+ EEA+EL+  M   +G++P+  TF  +L+ C+      +G +I   + R + I  
Sbjct: 454 VQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRAN-ITK 512

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAE 525
             +    ++ +    G L+ A  +      +   + W +++   + NG  +  L  F   
Sbjct: 513 NIIVETELVHMYSECGRLNYAKEIFNRMAERNAYS-WNSMIEGYQQNGETQEALRLFKQM 571

Query: 526 KLYGMEPEKLS 536
           +L G++P+  S
Sbjct: 572 QLNGIKPDCFS 582



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 146/525 (27%), Positives = 241/525 (45%), Gaps = 64/525 (12%)

Query: 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID--- 183
           DV    Y +LI  CI   S +  K + + M+S G+ PD Y+  ++L+++ R G + D   
Sbjct: 68  DVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCY 127

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           AR+LF+EMPERNL + N +I       DY+E   L+  +    +     TF ++I+A   
Sbjct: 128 ARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIA 187

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           +E +   +QL S  +K G   N+FV  AL+D Y++ G ++DA    DE+   + V WN +
Sbjct: 188 MEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAV 247

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           IAGY      EEA  ++  M   GV  D+FTF+  +R+C  L S +  KQ H+ L+  GF
Sbjct: 248 IAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGF 307

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             D    +AL+D Y+K    E    VFD+M  +N ++WN++I+     G   +A+ LF +
Sbjct: 308 KGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLR 367

Query: 424 MLLNGMRPNHVTFLAVLSAC-----------------------------------SRSGL 448
           M  +G + N     ++L A                                    S+ G+
Sbjct: 368 MQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGM 427

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP----FKTTKNMW 504
            E   ++F+S+   +++      Y  ++    +EG  +EA  L          +  +  +
Sbjct: 428 VEEAHQVFRSLLERNEVS-----YNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTF 482

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV---LLNIYNSSGKLKEAAEVIRTL 561
             LLT C    N   G+     L      K  N +V   L+++Y+  G+L  A E+   +
Sbjct: 483 TTLLTLCANQRNDNQGRQIHAHLIRANITK--NIIVETELVHMYSECGRLNYAKEIFNRM 540

Query: 562 RRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMML 606
             +      A SW       +  + G Q + +T+E  R   +M L
Sbjct: 541 AERN-----AYSW-------NSMIEGYQQNGETQEALRLFKQMQL 573



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 122/228 (53%), Gaps = 7/228 (3%)

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED-- 284
           SD     ++++I+          GK +H+  +  G+  + ++   ++ +Y++ G ++D  
Sbjct: 67  SDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLC 126

Query: 285 -AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
            A+ +F+EM E+    WNT+I  YA      E L LY  MR SG   D FTF  +I+ C 
Sbjct: 127 YARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACI 186

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            +  +   +Q  + +V+ G   ++    ALVD Y+++G ++DA    D++   +V++WNA
Sbjct: 187 AMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNA 246

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC----SRSG 447
           +IAGY      EEA  +F++ML  G+ P++ TF + L  C    SR G
Sbjct: 247 VIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDG 294


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/626 (36%), Positives = 381/626 (60%), Gaps = 16/626 (2%)

Query: 83  SSLPDT--QMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISAC 140
           SS P++  Q  +P + +CS       N R +EAL    +L    G ++G   YDAL++AC
Sbjct: 13  SSSPNSVLQTFRPISQLCS-------NGRLQEALLEMVML----GPEIGFHCYDALLNAC 61

Query: 141 IGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCN 200
           +  R++RE +RV ++M+ T + P  Y+R R+L+ + +C  + DAR++ DEMPE+N+VS  
Sbjct: 62  LDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWT 121

Query: 201 MIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM 260
            +I+    +G   EA  +F ++          TFAT++ +      +++GKQ+H   +K 
Sbjct: 122 AMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKW 181

Query: 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY 320
            +  ++FV  +L+DMY+K G IE+A+ +F+ + E+  V    IIAGYA  G  EEAL+++
Sbjct: 182 NYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMF 241

Query: 321 YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380
             ++  G++ ++ T++ ++   + LA L+H KQAH  ++R       V  ++L+D YSK 
Sbjct: 242 QRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKC 301

Query: 381 GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAV 439
           G +  A+ +FD M  +  ISWNA++ GY  HG G E +ELF  M     ++P+ VT LAV
Sbjct: 302 GNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAV 361

Query: 440 LSACSRSGLSERGWEIFQSM-SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK 498
           LS CS   + + G  I+  M + ++ IKP   HY C++++LGR G +DEAF  I+  P K
Sbjct: 362 LSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSK 421

Query: 499 TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVI 558
            T  +  +LL ACRV+ ++++G++   +L  +EPE   NYV+L N+Y S+G+ ++   V 
Sbjct: 422 PTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVR 481

Query: 559 RTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEK 618
             + +K +   P  SWI+ ++  H F + D++H + +E+  K+  + +++ + GYVP+  
Sbjct: 482 AMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDIS 541

Query: 619 TLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVT 677
            +L DVD EQ++++L  HSEKLA+ FGLI T +  P+++ ++ RIC DCHN  K+ + V 
Sbjct: 542 CVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKIFSKVF 601

Query: 678 GREIVVRDASRFHHFKDGMCSCGDYW 703
            RE+ +RD +RFH    G+CSCGDYW
Sbjct: 602 EREVSLRDKNRFHQIVKGICSCGDYW 627


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/598 (38%), Positives = 370/598 (61%), Gaps = 2/598 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N R++++L+LF  +   G F+    T+  ++ ACIGL +    K V   +L T +E DLY
Sbjct: 120 NDRFQDSLQLFAEMRMVG-FNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLY 178

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   +L ++ + G   D  R+F+EMP+ +++  + +I+    S    EA  LF  +   F
Sbjct: 179 VGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAF 238

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 TFA+++++ A +E + +GKQ+H   LK+G   NVFVS AL+D+Y+KCG ++++ 
Sbjct: 239 VLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSM 298

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +F E+  +  V WNT+I GY   G  ++AL LY  M +  V+    T+S ++R C  LA
Sbjct: 299 KLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLA 358

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           ++E   Q H+  ++  +  D+V  +AL+D Y+K G I++AR VFD +  ++ ISWNA+I+
Sbjct: 359 AMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMIS 418

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GY  HG   EA++ F+ M      PN +TF+++LSACS +GL + G   F+SM +D+ I+
Sbjct: 419 GYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIE 478

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P   HY CM+ LLGR G LD+A  LI   P +    +W ALL AC ++ +++LG  +A++
Sbjct: 479 PCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQ 538

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           +  ++P+  + +V+L NIY  + +    A V + ++ KG++  P  SWIE +   H F  
Sbjct: 539 ILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSV 598

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGL 645
           GD SH   K I   ++ + ++  K GYVP+   +L DV D++++R L  HSE+LA+AFGL
Sbjct: 599 GDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGL 658

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I T     ++I+++ RIC DCH+AIKLI+ +  R+I++RD +RFHHF+DG+CSCGDYW
Sbjct: 659 IRTPSRGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 135/254 (53%)

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           MP+RN VS   +I G + S    E   LF  +  E  +     F T+++    +E   + 
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
             LH+C  K+G   N FV  ALID Y+ CGS+  A+  FD ++ K  V W  ++A YA +
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
              +++L L+ EMR  G   +HFTF+ +++ C  L +    K  H  +++  + +D+   
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
             L+D Y+K+G   D   VF++M   +VI W+ +I+ Y    +  EAVELF QM    + 
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 431 PNHVTFLAVLSACS 444
           PN  TF +VL +C+
Sbjct: 241 PNQFTFASVLQSCA 254


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/574 (40%), Positives = 350/574 (60%), Gaps = 7/574 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY  LI  C+   ++++ + V  ++ S G+EP  ++ N ++ M+V+ G++ +AR LFDEM
Sbjct: 18  TYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEM 77

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P+RN+VS   +I+   +S    +A    + +  E       T+++++RA  GL  +   +
Sbjct: 78  PDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNL---R 134

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           QLH   LK+G   +VFV  ALID YSK G   DA  VF+EM     V WN+II G+A + 
Sbjct: 135 QLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNS 194

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             +E L LY  M+ +    D  T + ++R CT LA LE  +Q H  +++  +  D++ N+
Sbjct: 195 DGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNN 252

Query: 372 ALVDFYSKWGRIEDARHVFDKMLC-KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           AL+D Y K G +EDA  +F +M+  K+VISW+ +IAG   +G   +A++LFE M   G +
Sbjct: 253 ALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPK 312

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           PN++T L VL ACS +GL   GW  FQSM     I P   HY C+I+LLGR G LDEA  
Sbjct: 313 PNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVK 372

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
           LI     +     W  LL ACRV+ N++L  +AA+++  ++P     Y++L NIY +S K
Sbjct: 373 LIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYANSQK 432

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
            ++ AEV R +R +G++  P CSWIEV KQ H F+ GD SH + +EI R++ +++  + +
Sbjct: 433 WEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQRLMR 492

Query: 611 HGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
            GYVP+   +L D++ EQ +  L YHSEKLA+ FGL++  +   + I ++ RIC DCH  
Sbjct: 493 LGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGDCHIF 552

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            KL++ +  R IV+RD  R+HHF+ G+CSCGDYW
Sbjct: 553 AKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 163/323 (50%), Gaps = 30/323 (9%)

Query: 117 FEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV 176
           F IL    G      TY +++ AC GL ++R++      +L  G E D+++R+ ++  + 
Sbjct: 104 FLILMLREGVRPNMYTYSSVLRACDGLLNLRQLH---GSILKVGLESDVFVRSALIDTYS 160

Query: 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
           + G   DA  +F+EM   +LV  N II G   + D  E   L+  +          T  +
Sbjct: 161 KLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTS 220

Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE-MSEK 295
           ++RA  GL L+ +G+Q+H   LK  +  ++ ++ AL+DMY KCGS+EDA  +F   M+EK
Sbjct: 221 VLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEK 278

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             + W+T+IAG A +G+S +AL L+  M+  G K ++ T   ++  C+           H
Sbjct: 279 DVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACS-----------H 327

Query: 356 AGLVRHG----------FGLDIVAN--SALVDFYSKWGRIEDARHVFDKMLCK-NVISWN 402
           AGLV  G          FG+D        ++D   + G++++A  +  +M  + + ++W 
Sbjct: 328 AGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWR 387

Query: 403 ALIAGYGNHGRGEEAVELFEQML 425
            L+     H   + A+   +++L
Sbjct: 388 ILLGACRVHKNVDLAIYAAKEIL 410



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 69/121 (57%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M  + +  D  T+S +I+ C    +++ A+  H  +  +G+       + L++ Y K+G 
Sbjct: 7   MHRNRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGL 66

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           +++AR++FD+M  +NV+SW  +I+ Y N     +A++    ML  G+RPN  T+ +VL A
Sbjct: 67  LDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRA 126

Query: 443 C 443
           C
Sbjct: 127 C 127


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/606 (36%), Positives = 362/606 (59%), Gaps = 33/606 (5%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR------------- 177
           + + +++ +C  L  +   + +  Y++  G + DLY  N ++ M+ +             
Sbjct: 107 NVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLG 166

Query: 178 CGMMID-------------------ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G + D                    R++F+ MPE++LVS N IIAG   +G Y E   +
Sbjct: 167 AGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRM 226

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
             ++        S T ++++   A    IS GK++H C+++ G   +++V+ +LIDMY+K
Sbjct: 227 IREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAK 286

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           C  + D+  VF  ++E+  + WN+IIAG   +G  +E L  + +M  + +K   ++FS I
Sbjct: 287 CTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSI 346

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C  L +L   KQ H  + R+GF  +I   S+LVD Y+K G I  A+ +FD+M  +++
Sbjct: 347 MPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDM 406

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SW A+I G   HG+  +A+ELFEQM   G++PNHV F+AVL+ACS  GL +  W+ F S
Sbjct: 407 VSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNS 466

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M+RD  I P   HYA + +LLGR G L+EA+  I G     T ++WA LL+ACRV+ N++
Sbjct: 467 MTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNID 526

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           + +  A ++  ++P     Y++L NIY+++ + KEAA+   ++RR G+R  PACSWIEVK
Sbjct: 527 MAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVK 586

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVL-SYHSE 637
            + + F++GD+SH   ++I   ++ ++  + K GYVP+   +  DV+E++++ L   HSE
Sbjct: 587 NKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSE 646

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           +LA+ FG+INT     +++ ++ R+C DCH A K I+ + GREIVVRD SRFHHFK+G C
Sbjct: 647 RLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTC 706

Query: 698 SCGDYW 703
           SCGDYW
Sbjct: 707 SCGDYW 712



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 110/251 (43%), Gaps = 33/251 (13%)

Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
           ++R    ++  S  +QLH+  LK     ++     L+ +YS    + D+  +F+ +    
Sbjct: 12  LLRNPLSIKSRSQAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPP 70

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
            + W ++I  Y  HG   ++L  +  M  SG+  DH  F  +++ C  L  L   +  H 
Sbjct: 71  ALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHG 130

Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDA------------------------------ 386
            ++R G   D+   +AL++ YSK   +E++                              
Sbjct: 131 YIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSED 190

Query: 387 --RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
             R +F+ M  K+++SWN +IAG   +G  EE + +  +M    ++P+  T  +VL   +
Sbjct: 191 SVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIA 250

Query: 445 RSGLSERGWEI 455
            +    RG EI
Sbjct: 251 ENVDISRGKEI 261



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 94/214 (43%), Gaps = 3/214 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N  + E L  F  +         S ++ +++ AC  L ++   K++  Y+  
Sbjct: 310 SIIAGCVQNGLFDEGLRFFRQM-LMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITR 368

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF+ ++++ + ++ M+ +CG +  A+++FD M  R++VS   +I G    G   +A  L
Sbjct: 369 NGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIEL 428

Query: 219 FLDLWEEFSDCGSRTFATMIRA-SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           F  +  E        F  ++ A S G  +    K  +S     G    V    A+ D+  
Sbjct: 429 FEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLG 488

Query: 278 KCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALH 310
           + G +E+A      M    T   W T+++   +H
Sbjct: 489 RAGRLEEAYDFICGMHIGPTGSIWATLLSACRVH 522


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/574 (38%), Positives = 350/574 (60%), Gaps = 2/574 (0%)

Query: 132 TYDALISACIGLRSIREVKR-VFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           T  +++ AC  L     V R V +  L  G   D ++   ++ ++ + G M +A  LF  
Sbjct: 400 TITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHN 459

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
               +L S N ++ G   S +Y EA  LF  + E        TFA   +A+  L  +  G
Sbjct: 460 QDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQG 519

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           KQ+H+  +KM F  ++FV   ++DMY KCG ++ A+ VF+++     V W T+I+G   +
Sbjct: 520 KQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVEN 579

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G  E+AL  Y++MR +GV+ D +TF+ +++ C+ L +LE  KQ HA +++     D    
Sbjct: 580 GEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVM 639

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           ++LVD Y+K G IEDA  +F +M  ++V  WNA+I G   HG  EEA+  F +M   G+ 
Sbjct: 640 TSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVT 699

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           P+ VTF+ VLSACS SGL+   ++ F SM + + ++P   HY+C+++ L R G + EA  
Sbjct: 700 PDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEK 759

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
           ++   PF+ +  M+  LL ACRV G+ E G+  AEKL+ M+P   + YV+L NIY ++ +
Sbjct: 760 VVSSMPFEASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQ 819

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
            + A      ++R  ++  P  SWI++K + H+F++GD+SH +T  IY KV+ +M  I +
Sbjct: 820 WENAVSARNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKE 879

Query: 611 HGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
            GYVP+ +  L D++E+++   LSYHSEKLA+A+GL+ T   T L+++++ R+C DCHNA
Sbjct: 880 EGYVPDTEFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNA 939

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           IK I+ V  REIV+RDA+RFHHF+ G+CSCGDYW
Sbjct: 940 IKYISNVFQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 159/291 (54%), Gaps = 2/291 (0%)

Query: 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP 163
             ++  YREAL LF ++  E G      T+     A   L  +++ K++ + ++   F  
Sbjct: 475 FTVSDNYREALRLFSLMH-ERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHY 533

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           DL++ + +L M+++CG M  AR++F+++P  + V+   +I+G +++G+  +A   +  + 
Sbjct: 534 DLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMR 593

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
                    TFAT+++A + L  +  GKQ+H+  +K+    + FV  +L+DMY+KCG+IE
Sbjct: 594 LAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIE 653

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
           DA G+F  M+ ++   WN +I G A HG +EEAL+ + EM+  GV  D  TF  ++  C+
Sbjct: 654 DAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACS 713

Query: 344 RLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
                  A +    + + +G   +I   S LVD  S+ G I++A  V   M
Sbjct: 714 HSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSM 764



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 213/446 (47%), Gaps = 30/446 (6%)

Query: 108 KRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
           +R REA  LF+ +      DV    ++ ++ A + + +  EV  +FS    +G  PD  +
Sbjct: 171 QRIREARVLFDRMPVR---DV--VLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPDC-V 224

Query: 168 RNRVLLMHVRCGMMID---------ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
             R +LM V    + +         A +LF    + ++   N  ++  + +G+  EA   
Sbjct: 225 SVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDC 284

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F D+ +    C S T+  ++   A L  + +GKQ+H   ++ G+   V V+ + I+MY K
Sbjct: 285 FRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVK 344

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            GS+  A+ +F +M E   + WNT+I+G A  G  E +L L+ ++  SG+  D FT + +
Sbjct: 345 AGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSV 404

Query: 339 IRICTRL-ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           +R C+ L  S    +Q H   ++ G  LD   ++AL+D YSK G++E+A  +F      +
Sbjct: 405 LRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFD 464

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           + SWNA++ G+       EA+ LF  M   G + + +TF     A       ++G +I  
Sbjct: 465 LASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHA 524

Query: 458 SMSRDHKIKPRAMHY-----ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACR 512
            +     IK R  HY     + ++++  + G +  A  +    P       W  +++ C 
Sbjct: 525 VV-----IKMR-FHYDLFVISGILDMYLKCGEMKSARKVFNQIP-SPDDVAWTTVISGCV 577

Query: 513 VNGNLELGKFAAE--KLYGMEPEKLS 536
            NG  E   F     +L G++P++ +
Sbjct: 578 ENGEEEQALFTYHQMRLAGVQPDEYT 603



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 9/229 (3%)

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD--E 291
           F+ +  A A  +LI +GK+ H+  +  G   + +V+  LI MY+KCGS+  A+ +FD   
Sbjct: 17  FSILRHAIADSDLI-LGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITP 75

Query: 292 MSEKTTVGWNTIIAGYALHG------YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
            S++  V +N I+A YA  G       + EA  ++  +R S +     T S + ++C   
Sbjct: 76  QSDRDLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLY 135

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
            S   ++      V+ G   D+    ALV+ Y+K+ RI +AR +FD+M  ++V+ WN ++
Sbjct: 136 GSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMM 195

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
             Y   G G+E + LF     +G+RP+ V+   +L    +  + ER  E
Sbjct: 196 KAYVEMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELE 244



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 144/324 (44%), Gaps = 43/324 (13%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE--RNLVSCNMIIAGMI 207
           KR  + ++++G  PD Y+ N ++ M+ +CG +  AR+LFD  P+  R+LV+ N I+A   
Sbjct: 33  KRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYA 92

Query: 208 DSGDY------LEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
            +G+        EAF +F  L +        T + + +        S  + L   A+K+G
Sbjct: 93  HTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIG 152

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
              +VFV+ AL+++Y+K   I +A+ +FD M  +  V WN ++  Y   G  +E L L+ 
Sbjct: 153 LQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFS 212

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
               SG++ D  +   I+                      G G   V    L        
Sbjct: 213 AFHRSGLRPDCVSVRTILM---------------------GVGKKTVFEREL-------- 243

Query: 382 RIEDARHVFDKMLC----KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
             E  R    K+       +V  WN  ++ Y   G G EAV+ F  M+ + +  + +T++
Sbjct: 244 --EQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYI 301

Query: 438 AVLSACSRSGLSERGWEIFQSMSR 461
            +LS  +     E G +I  ++ R
Sbjct: 302 VILSVVASLNHLELGKQIHGAVVR 325


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/597 (38%), Positives = 359/597 (60%), Gaps = 1/597 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N   R ALE+  ++  E        T  +++ A   LR IR  K +  Y +  GF+  + 
Sbjct: 214 NGMARMALEMVNLM-CEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVN 272

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   ++ M+ +CG +  AR LFD M ERN+VS N +I   + + +  EA ++F  + +E 
Sbjct: 273 IATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEG 332

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 +    + A A L  +  G+ +H  ++++    NV V  +LI MY KC  ++ A 
Sbjct: 333 VKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAA 392

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +F ++  +T V WN +I G+A +G   EAL+ + +M+   VK D FT+  +I     L+
Sbjct: 393 SMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELS 452

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
              HAK  H  ++R+    ++   +ALVD Y+K G I  AR +FD M  ++V +WNA+I 
Sbjct: 453 ITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMID 512

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GYG HG G+ A+ELFE+M    +RPN VTFL+V+SACS SGL E G + F  M  ++ I+
Sbjct: 513 GYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIE 572

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P   HY  M++LLGR G L+EA+  I   P K   N++ A+L AC+++ N+   +  AE+
Sbjct: 573 PSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAER 632

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           L+ + PE    +V+L NIY ++   ++  +V  ++ R+GLR  P CS +E+K + H F S
Sbjct: 633 LFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFS 692

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLI 646
           G  +H  +K+IY  +++++ +I + GYVP+   +L   D+ ++++LS HSEKLA++FGL+
Sbjct: 693 GSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLILGLEDDVKEQLLSSHSEKLAISFGLL 752

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           NT+  T + + ++ R+C DCHNA K I++VTGREI+VRD  RFHHFK+G CSCGDYW
Sbjct: 753 NTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 165/308 (53%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           S++E++ +   +   G   +   + +++ +  R G + +A R+F+ + ++  V    ++ 
Sbjct: 49  SLKELRHILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLK 108

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
           G     D  +A   F+ + ++  +     F  +++       + VGK++H   +K GF  
Sbjct: 109 GFAKVSDLDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSL 168

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           ++F    L +MY+KC  + +A+ VFD M E+  V WNTI+AGY+ +G +  AL++   M 
Sbjct: 169 DLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMC 228

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           +  +K    T   ++   + L  +   K+ H   +R GF   +   +ALVD Y+K G ++
Sbjct: 229 EENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLK 288

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            AR +FD ML +NV+SWN++I  Y  +   +EA+ +F++ML  G++P  V+ +  L AC+
Sbjct: 289 TARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACA 348

Query: 445 RSGLSERG 452
             G  ERG
Sbjct: 349 DLGDLERG 356



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 110/198 (55%)

Query: 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL 317
            K G          L+ ++ + GS+++A  VF+ + +K  V + T++ G+A     ++AL
Sbjct: 61  FKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKAL 120

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
             +  MRD  V+   + F+ ++++C   A L   K+ H  LV+ GF LD+ A + L + Y
Sbjct: 121 KFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMY 180

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           +K  ++ +AR VFD+M  ++++SWN ++AGY  +G    A+E+   M    ++P+ +T +
Sbjct: 181 AKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIV 240

Query: 438 AVLSACSRSGLSERGWEI 455
           +VL A S   L   G EI
Sbjct: 241 SVLPAVSALRLIRIGKEI 258


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 221/573 (38%), Positives = 356/573 (62%), Gaps = 1/573 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY  ++SAC  L ++ + K++ ++++ + +  D+ +   +  M+++CG   DAR +F+ +
Sbjct: 232 TYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECL 291

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
             R++++ N +I G +DSG   EA   F  + EE       T+ T++ A A    ++ GK
Sbjct: 292 SYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGK 351

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           ++H+ A K G   +V    ALI+MYSK GS++DA+ VFD M ++  V W T++  YA   
Sbjct: 352 EIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCD 411

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
              E+   + +M   GVK +  T+  +++ C+   +L+  K+ HA +V+ G   D+   +
Sbjct: 412 QVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTN 471

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           AL+  Y K G +EDA  VF+ M  ++V++WN LI G G +GRG EA++ +E M   GMRP
Sbjct: 472 ALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRP 531

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           N  TF+ VLSAC    L E G   F  MS+D+ I P   HYACM+++L R G L EA  +
Sbjct: 532 NAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDV 591

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           I   P K +  MW ALL ACR++ N+E+G+ AAE    +EP+    YV L  IY ++G  
Sbjct: 592 ILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMW 651

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
           ++ A++ + ++ +G++  P  SWIE+  + H F++ DQSH +T+EIY +++ +  ++   
Sbjct: 652 RDVAKLRKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSL 711

Query: 612 GYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           GYVP+ + ++ D+D++ ++R + +HSEKLA+A+GLI+T   TP++I ++ R+C DCH A 
Sbjct: 712 GYVPDTRFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCHTAT 771

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           K I+ +T REI+ RDA RFHHFK+G CSCGDYW
Sbjct: 772 KFISKITKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  229 bits (583), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 126/384 (32%), Positives = 212/384 (55%), Gaps = 2/384 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G  V S  Y  L+ +C+  + +   K+V  ++L  G +P++Y+ N +L ++  CG + +A
Sbjct: 23  GPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEA 82

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R+LFD+   +++VS N++I+G    G   EAF LF  + +E  +    TF +++ A +  
Sbjct: 83  RQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSP 142

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
            +++ G+++H   ++ G  ++  V  ALI MY+KCGS+ DA+ VFD M+ +  V W T+ 
Sbjct: 143 AVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLT 202

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
             YA  GY EE+L  Y+ M    V+    T+  ++  C  LA+LE  KQ HA +V   + 
Sbjct: 203 GAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEYH 262

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D+  ++AL   Y K G  +DAR VF+ +  ++VI+WN +I G+ + G+ EEA   F +M
Sbjct: 263 SDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRM 322

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
           L  G+ P+  T+  VLSAC+R G   RG EI    ++D  +       A +I +  + G 
Sbjct: 323 LEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNA-LINMYSKAGS 381

Query: 485 LDEAFALIRGAPFKTTKNMWAALL 508
           + +A  +    P +   + W  LL
Sbjct: 382 MKDARQVFDRMPKRDVVS-WTTLL 404



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 75/138 (54%)

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
           D+   +   G ++D + +  +++ C +   L   KQ H  ++R G   ++   + L+  Y
Sbjct: 14  DVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLY 73

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           +  G + +AR +FDK   K+V+SWN +I+GY + G  +EA  LF  M    + P+  TF+
Sbjct: 74  AHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFV 133

Query: 438 AVLSACSRSGLSERGWEI 455
           ++LSACS   +   G EI
Sbjct: 134 SILSACSSPAVLNWGREI 151


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 227/584 (38%), Positives = 357/584 (61%)

Query: 120 LEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG 179
           ++ E G    + T  +++ AC   +++   + V ++ +  GF+  + +   +L ++ +CG
Sbjct: 317 MQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCG 376

Query: 180 MMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIR 239
            +  AR++FD M +RN VS N +I G  ++GD  EA  LF  +  E  D    +    + 
Sbjct: 377 AVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALH 436

Query: 240 ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
           A   L  +  G+++H   +++G   NV V  ALI MY KC   + A  VFDE+  KT V 
Sbjct: 437 ACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVS 496

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           WN +I G   +G SE+A+ L+  M+   VK D FT   II     ++    A+  H   +
Sbjct: 497 WNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSI 556

Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVE 419
           R     D+   +AL+D Y+K GR+  AR +F+    ++VI+WNA+I GYG+HG G+ AVE
Sbjct: 557 RLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVE 616

Query: 420 LFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479
           LFE+M  +G  PN  TFL+VLSACS +GL + G E F SM  D+ ++P   HY  M++LL
Sbjct: 617 LFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLL 676

Query: 480 GREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYV 539
           GR G L EA++ I+  P +   +++ A+L AC+++ N+EL + +A++++ +EPE+   +V
Sbjct: 677 GRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHV 736

Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYR 599
           +L NIY ++   K+ A V   + +KGL+  P  S +++K + H F SG  +H Q K+IY 
Sbjct: 737 LLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYA 796

Query: 600 KVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQS 659
           ++ +++ EI   GYVP+  ++    D+ + ++L+ HSEKLA+A+GLI T+  T +QI ++
Sbjct: 797 RLAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKN 856

Query: 660 HRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            R+C DCHNA KLI++VTGREI++RD  RFHHFKDG CSCGDYW
Sbjct: 857 LRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/488 (27%), Positives = 237/488 (48%), Gaps = 38/488 (7%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           R AL  F  +    G      T+ +L+  C     +   + V + + + G  P+      
Sbjct: 206 RGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATA 265

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD-C 229
           +  M+ +C    DARR+FD MP R+ V+ N ++AG   +G    A  + + + EE  +  
Sbjct: 266 LANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERP 325

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
            + T  +++ A A  + +   +++H+ A++ GF + V VS A++D+Y KCG+++ A+ VF
Sbjct: 326 DAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVF 385

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           D M ++ +V WN +I GYA +G + EAL L+  M   GV +   +    +  C  L  L+
Sbjct: 386 DGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLD 445

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             ++ H  LVR G   ++   +AL+  Y K  R + A  VFD++  K  +SWNA+I G  
Sbjct: 446 EGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCT 505

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS--RSGLSER---GWEIFQSMSRDHK 464
            +G  E+AV LF +M L  ++P+  T ++++ A +     L  R   G+ I   + +D  
Sbjct: 506 QNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVY 565

Query: 465 I----------------------KPRAMH---YACMIELLGREG---LLDEAFALIRGAP 496
           +                        R  H   +  MI   G  G   +  E F  ++ + 
Sbjct: 566 VLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSG 625

Query: 497 FKTTKNMWAALLTACRVNGNLELGK--FAAEKL-YGMEPEKLSNYVVLLNIYNSSGKLKE 553
               +  + ++L+AC   G ++ G+  F++ K  YG+EP  + +Y  ++++   +GKL E
Sbjct: 626 KVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEP-GMEHYGTMVDLLGRAGKLHE 684

Query: 554 AAEVIRTL 561
           A   I+ +
Sbjct: 685 AWSFIQKM 692


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 220/571 (38%), Positives = 355/571 (62%), Gaps = 1/571 (0%)

Query: 134 DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193
           D  IS     R+I ++K+V + + +TG   DL + N++L M  +   ++ A  LF++M E
Sbjct: 4   DFFISTLFKCRNIFQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEE 63

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL 253
           R+ VS +++I G + +GDY   F  F +L    S   + +   +I+A      + +G+ +
Sbjct: 64  RDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLI 123

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           HS  LK G   + FV   L+DMY+KCG I++A+ +FD M +K  V    +IAGYA  G  
Sbjct: 124 HSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKP 183

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
            E+  L+ +MR  G   D      I+  C +L ++  A+  H  +    + LD+   +A+
Sbjct: 184 NESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAM 243

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           +D Y+K G I+ +R +FD+M  KNVISW+A+I  YG HG+G EA+ELF  ML +G+ PN 
Sbjct: 244 IDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNR 303

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
           +TF+++L ACS +GL + G ++F  MS  + ++P   HY CM++LLGR G LD+A  LI 
Sbjct: 304 ITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIE 363

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
               +  + +W A L ACR++  ++L + AA+ L  ++ +   +Y++L NIY ++G+ K+
Sbjct: 364 NMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKD 423

Query: 554 AAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGY 613
            A++   + ++ L+ +P  +WIEV    + F +GD SH+++ EIY  +  +  ++   GY
Sbjct: 424 VAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGY 483

Query: 614 VPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKL 672
           VP+  ++L DVDE+ +  +L  HSEKLA+AFGLI T D TP++I ++ R+C DCH+  KL
Sbjct: 484 VPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCKL 543

Query: 673 IAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++ +T R+I+VRDA+RFHHFK+G+CSCGDYW
Sbjct: 544 VSAITQRDIIVRDANRFHHFKEGICSCGDYW 574


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/595 (37%), Positives = 361/595 (60%), Gaps = 2/595 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + +A ELF  ++ + G      ++ +++  C    ++   K V +  ++ G   D+ +  
Sbjct: 240 WEKAFELFYRMQ-QVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVAT 298

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+  CG +  ARR+FD M  R++VS  ++I G  ++G+  +AF LF  + EE    
Sbjct: 299 SLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQP 358

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              T+  ++ A A    ++  +++HS     GFG ++ VS AL+ MY+KCG+I+DA+ VF
Sbjct: 359 DRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVF 418

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           D M  +  V W+ +I  Y  +GY  EA + ++ M+ S ++ D  T+  ++  C  L +L+
Sbjct: 419 DAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALD 478

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
              + +   ++      +   +AL+   +K G +E AR++FD M+ ++VI+WNA+I GY 
Sbjct: 479 VGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYS 538

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            HG   EA+ LF++ML    RPN VTF+ VLSACSR+G  + G   F  +     I P  
Sbjct: 539 LHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTV 598

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
             Y CM++LLGR G LDEA  LI+  P K T ++W++LL ACR++GNL++ + AAE+   
Sbjct: 599 KLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLM 658

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           ++P   + YV L ++Y ++G  +  A+V + +  +G+R    C+WIEV  + H F+  D+
Sbjct: 659 IDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDR 718

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINT 648
           SH    EIY ++ R+M  I + GY+P  + +L DV EQ+ +  +SYHSEKLA+A+G+++ 
Sbjct: 719 SHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSL 778

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              TP++I ++ R+C DCH+A K I+ VTGREI+ RDASRFHHFKDG+CSCGDYW
Sbjct: 779 PSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/437 (28%), Positives = 220/437 (50%), Gaps = 5/437 (1%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           EGG  + S TY  L   C  LR     K+V  +++  G + ++Y  N ++ ++  CG + 
Sbjct: 50  EGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVT 109

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
           +AR++FD +  + +V+ N +IAG    G   EAF LF  + +E  +    TF +++ A +
Sbjct: 110 EARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACS 169

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
               ++ GK++H+  +  GF  +  +  AL+ MY K GS++DA+ VFD +  +    +N 
Sbjct: 170 SPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNV 229

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           ++ GYA  G  E+A +L+Y M+  G+K +  +F  I+  C    +L   K  HA  +  G
Sbjct: 230 MVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAG 289

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
              DI   ++L+  Y+  G IE AR VFD M  ++V+SW  +I GY  +G  E+A  LF 
Sbjct: 290 LVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFA 349

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
            M   G++P+ +T++ +++AC+ S       EI  S           +    ++ +  + 
Sbjct: 350 TMQEEGIQPDRITYMHIMNACAISANLNHAREI-HSQVDIAGFGTDLLVSTALVHMYAKC 408

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVN--GNLELGKFAAEKLYGMEPEKLSNYVV 540
           G + +A  +    P +   + W+A++ A   N  G      F   K   +EP+ ++ Y+ 
Sbjct: 409 GAIKDARQVFDAMPRRDVVS-WSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVT-YIN 466

Query: 541 LLNIYNSSGKLKEAAEV 557
           LLN     G L    E+
Sbjct: 467 LLNACGHLGALDVGMEI 483



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 36/252 (14%)

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           A D+   + + G  +D  T+  + + CT L      KQ    +++ G  L+I   + L+ 
Sbjct: 41  ANDVLQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIK 100

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            YS  G + +AR +FD +  K V++WNALIAGY   G  +EA  LF QM+  G+ P+ +T
Sbjct: 101 LYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIIT 160

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
           FL+VL ACS                      P  +++              E  A +  A
Sbjct: 161 FLSVLDACS---------------------SPAGLNWG------------KEVHAQVVTA 187

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
            F +   +  AL++     G+++    A +   G+    +S + V++  Y  SG  ++A 
Sbjct: 188 GFVSDFRIGTALVSMYVKGGSMD---DARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAF 244

Query: 556 EVIRTLRRKGLR 567
           E+   +++ GL+
Sbjct: 245 ELFYRMQQVGLK 256


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/593 (39%), Positives = 351/593 (59%), Gaps = 3/593 (0%)

Query: 112  EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
            EA  +F  ++ EG     S+TY +L++      ++  V  V  + + TG   D  + +  
Sbjct: 507  EAFTVFLQMQQEG-LVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAF 565

Query: 172  LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
            + M++RCG + DAR LFD++  R++ + N +I G        EA  LFL +  E     +
Sbjct: 566  IHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDA 625

Query: 232  RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
             TF  ++ A+   E +   K++HS A   G  D + V  AL+  YSKCG+++ A+ VFD+
Sbjct: 626  TTFINILSANVDEEALEWVKEVHSHATDAGLVD-LRVGNALVHTYSKCGNVKYAKQVFDD 684

Query: 292  MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
            M E+    W  +I G A HG   +A   + +M   G+  D  T+  I+  C    +LE  
Sbjct: 685  MVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACASTGALEWV 744

Query: 352  KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
            K+ H   V  G   D+   +ALV  Y+K G I+DAR VFD M+ ++V SW  +I G   H
Sbjct: 745  KEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQH 804

Query: 412  GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
            GRG EA++ F +M   G +PN  +++AVL+ACS +GL + G   F SM++D+ I+P   H
Sbjct: 805  GRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEH 864

Query: 472  YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
            Y CM++LLGR GLL+EA   I   P +     W ALL AC   GNLE+ +FAA++   ++
Sbjct: 865  YTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLK 924

Query: 532  PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
            P+  S YV+L NIY ++GK ++   V   ++RKG+R  P  SWIEV  + H F+ GD SH
Sbjct: 925  PKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSH 984

Query: 592  VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSD 650
             ++KEIY +++ ++  +   GYVP+ + +L + D E +++ L  HSEKLA+ +GL++T  
Sbjct: 985  PESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHKEQALCSHSEKLAIVYGLMHTQS 1044

Query: 651  WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              P+++ ++ R+C DCH A K I+ +TGREIV RDA RFHHFKDG+CSCGDYW
Sbjct: 1045 KDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  225 bits (574), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 173/663 (26%), Positives = 309/663 (46%), Gaps = 66/663 (9%)

Query: 3   IPLLRYQSVALDQIQNSCS---FSCSFTAN-----KVLKGKSLLSGCYFSLDKRKWKRSF 54
           + LL   +V+ + I   C     S SF  N     ++L G +LLSG       R  +  F
Sbjct: 5   MQLLNSPTVSSELIDGQCGRGVISSSFRMNEAQVQRILVGSTLLSG----RQMRHSRLYF 60

Query: 55  QRVECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSA--GICSQIEKLVLNKRYRE 112
             +  C   +                K   LP   +   ++  G   Q   ++  K   +
Sbjct: 61  LSISGCFKSE----------------KHKYLPSVLVCANASVDGAAEQTHNVITAK---D 101

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           A+ + +I   + G  + S +Y  ++  C+    I   K+V   ++ +G E +LY+ N++L
Sbjct: 102 AVAMLKI-RVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLL 160

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            +++RCG +  AR++FD++ ++N+     +I G  + G   +A  ++  + +E       
Sbjct: 161 RVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEI 220

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T+ ++++A      +  GK++H+  ++ GF  +V V  AL++MY KCGSIEDAQ +FD+M
Sbjct: 221 TYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKM 280

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            E+  + W  +I G A +G  +EA  L+ +M+  G   + +T+  I+       +LE  K
Sbjct: 281 VERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVK 340

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           + H+  V  G  LD+   +ALV  Y+K G I+DAR VFD M  +++ SW  +I G   HG
Sbjct: 341 EVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHG 400

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW-EIFQSMSRDHKIKPRAMH 471
           RG+EA  LF QM  NG  PN  T+L++L+A + +  S   W ++    + +         
Sbjct: 401 RGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRI 460

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN--GNLELGKFAAEKLYG 529
              +I +  + G +D+A  +  G   +   + W A++     N  G+     F   +  G
Sbjct: 461 GNALIHMYAKCGSIDDARLVFDGMCDRDVIS-WNAMMGGLAQNGCGHEAFTVFLQMQQEG 519

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL-----------RMLPACSWIEVK 578
           + P+  + Y+ LLN + S+  L+   EV +     GL            M   C  I+  
Sbjct: 520 LVPDS-TTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDA 578

Query: 579 KQPHVFLSGDQSHVQT----------KEIYRKVDRMMLEISKHGYVPEEKTLL----PDV 624
           +   +F      HV T          +   R+   + L++ + G++P+  T +     +V
Sbjct: 579 RL--LFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANV 636

Query: 625 DEQ 627
           DE+
Sbjct: 637 DEE 639


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/573 (37%), Positives = 355/573 (61%), Gaps = 2/573 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            Y + I+AC   +++ + +++ +++ S+ F  D ++ N ++ M+ +C  ++DAR +FD+M
Sbjct: 53  VYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQM 112

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
             +++VS   +IAG   +   +EA  L   + +        TFA++++A+        G+
Sbjct: 113 RRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGR 172

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           Q+H+ A+K G+ ++V+V  AL+DMY++CG ++ A  VFD++  K  V WN +I+G+A  G
Sbjct: 173 QIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKG 232

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             E AL  + EM  +G +  HFT+S +     RL +LE  K  HA +++    L     +
Sbjct: 233 DGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGN 292

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
            L+D Y+K G + DAR VFD++  K++++WN+++  +  +G G+EAV  FE+M  +G+  
Sbjct: 293 TLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYL 352

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           N +TFL +L+ACS  GL + G   F+ M +++ ++P   HY  ++ LLGR GLL+ A   
Sbjct: 353 NQITFLCILTACSHGGLVKEGKRYFE-MMKEYDLEPEIDHYVTVVALLGRAGLLNYALVF 411

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           I   P + T  +W ALL ACR++ N ++G+FAA+ ++ ++P+     V+L NIY S+G+ 
Sbjct: 412 IFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQW 471

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
             AA V   ++  G++  PACSW+E++   H+F++ D +H Q +EIY+    +  +I K 
Sbjct: 472 DAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVANDDTHPQAEEIYKMWGEISKKIRKE 531

Query: 612 GYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           GYVP+   +L  VD+QE+   L YHSEKLA+AF LI       ++I+++ RIC DCH+A 
Sbjct: 532 GYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAF 591

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           K I+ V GREIVVRD +RFHHF  G CSCGDYW
Sbjct: 592 KYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 134/276 (48%), Gaps = 12/276 (4%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   +K      S I     N    EA+ L   +  +G F     T+ +L+ A       
Sbjct: 110 DQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGM-LKGRFKPNGFTFASLLKAAGAYADS 168

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
              +++ +  +  G+  D+Y+ + +L M+ RCG M  A  +FD++  +N VS N +I+G 
Sbjct: 169 GTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGF 228

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
              GD   A + F ++     +    T++++  + A L  +  GK +H+  +K       
Sbjct: 229 ARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTA 288

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
           FV   L+DMY+K GS+ DA+ VFD +  K  V WN+++  +A +G  +EA+  + EMR S
Sbjct: 289 FVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKS 348

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           GV ++  TF  I+  C+           H GLV+ G
Sbjct: 349 GVYLNQITFLCILTACS-----------HGGLVKEG 373



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 85/187 (45%), Gaps = 1/187 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           GF+    TY ++ S+   L ++ + K V ++++ +  +   ++ N +L M+ + G MIDA
Sbjct: 248 GFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDA 307

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R++FD +  ++LV+ N ++      G   EA   F ++ +        TF  ++ A +  
Sbjct: 308 RKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHG 367

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA-QGVFDEMSEKTTVGWNTI 303
            L+  GK+      +      +     ++ +  + G +  A   +F    E T   W  +
Sbjct: 368 GLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGAL 427

Query: 304 IAGYALH 310
           +A   +H
Sbjct: 428 LAACRMH 434


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/573 (37%), Positives = 358/573 (62%), Gaps = 2/573 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            Y A I+AC   +++ + +++  ++ S+ FE D ++ N ++ ++ +CG +++A ++FD+M
Sbjct: 53  VYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKM 112

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            ++++VS   +IAG   +    EA  L   + +        TFA++++A+       +G 
Sbjct: 113 RKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGG 172

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           Q+H+ A+K  + ++V+V  AL+DMY++CG ++ A  VFD++  K  V WN +I+G+A  G
Sbjct: 173 QIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKG 232

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             E AL ++ EM+ +G +  HFT+S I      + +LE  K  HA +V+    L     +
Sbjct: 233 DGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGN 292

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
            ++D Y+K G + DAR VF+++L K++++WN+++  +  +G G+EAV  FE+M  +G+  
Sbjct: 293 TMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYL 352

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           N +TFL +L+ACS  GL + G   F  M +++ ++P   HY  +++LLGR GLL+ A   
Sbjct: 353 NQITFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVF 411

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           I   P + T  +W ALL ACR++ N ++G+FAA+ ++ ++P+     V+L NIY S+G  
Sbjct: 412 IFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHW 471

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
             AA V + ++  G++  PACSW+E+    H+F++ D +H + +EIY+  D + ++I K 
Sbjct: 472 DAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEISMKIRKE 531

Query: 612 GYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           GYVP+   +L  VDEQE+   L YHSEK+A+AF LI       ++I+++ RIC DCH+A 
Sbjct: 532 GYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAF 591

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           K I+ V  REIVVRD +RFHHF +G CSCGDYW
Sbjct: 592 KYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 91/199 (45%), Gaps = 2/199 (1%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           AL +F  ++   GF+    TY ++ S   G+ ++ + K V ++M+ +  +   ++ N +L
Sbjct: 237 ALMVFAEMQ-RNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTML 295

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            M+ + G MIDAR++F+ +  ++LV+ N ++      G   EA   F ++ +        
Sbjct: 296 DMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQI 355

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA-QGVFDE 291
           TF  ++ A +   L+  GK       +      +     ++D+  + G +  A   +F  
Sbjct: 356 TFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKM 415

Query: 292 MSEKTTVGWNTIIAGYALH 310
             E T   W  ++A   +H
Sbjct: 416 PMEPTAAVWGALLAACRMH 434


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/598 (38%), Positives = 370/598 (61%), Gaps = 6/598 (1%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           R+A++LF  +   G +     T   ++SAC  +  +   ++    ++ +G + D+ +   
Sbjct: 127 RDAVDLFLDMVLSG-YVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCS 185

Query: 171 VLLMHVRC---GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDY-LEAFLLFLDLWEEF 226
           ++ M+ +C   G + DAR++FD MP  N++S   II G + SG    EA  LFL++ +  
Sbjct: 186 LVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQ 245

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 TF+++++A A L  I +G+Q+++  +KM       V  +LI MYS+CG++E+A+
Sbjct: 246 VKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENAR 305

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
             FD + EK  V +NTI+  YA    SEEA +L+ E+  +G  ++ FTF+ ++   + + 
Sbjct: 306 KAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIG 365

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           ++   +Q H+ +++ GF  ++   +AL+  YS+ G IE A  VF++M   NVISW ++I 
Sbjct: 366 AIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMIT 425

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           G+  HG    A+E F +ML  G+ PN VT++AVLSACS  GL   G + F+SM  +H I 
Sbjct: 426 GFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIV 485

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           PR  HYAC+++LLGR G L+EA  L+   PFK    +    L ACRV+GN++LGK AAE 
Sbjct: 486 PRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEM 545

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           +   +P   + Y++L N++ S+G+ +E AE+ + ++ + L     CSWIEV+ + H F  
Sbjct: 546 ILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYV 605

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGL 645
           GD SH Q +EIY ++D++ L+I + GY+P    +L DV +EQ+++ L  HSEK+AVA+G 
Sbjct: 606 GDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGF 665

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I+TS   P+++ ++ R+C DCH A K  ++V  +EIV+RDA+RFHHFKDG CSC DYW
Sbjct: 666 ISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 120/383 (31%), Positives = 187/383 (48%), Gaps = 50/383 (13%)

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG----SRTFATMIRASAGLELIS 248
           +R+LVS + +I+   ++    EA   F D+ E    CG       F  + RA +  E IS
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLE----CGFYPNEYCFTGVFRACSNKENIS 59

Query: 249 VGKQLHSCALKMG-FGDNVFVSCALIDMYSKC-GSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           +GK +    LK G F  +V V CALIDM+ K  G +E A  VFD M ++  V W  +I  
Sbjct: 60  LGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITR 119

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           +   G+S +A+DL+ +M  SG   D FT S ++  C  +  L   +Q H  +++ G  LD
Sbjct: 120 FQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLD 179

Query: 367 IVANSALVDFYSKW---GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE-EAVELFE 422
           +    +LVD Y+K    G ++DAR VFD+M   NV+SW A+I GY   G  + EA+ELF 
Sbjct: 180 VCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFL 239

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           +M+   ++PNH TF +VL AC+       G ++                YA ++++    
Sbjct: 240 EMVQGQVKPNHFTFSSVLKACANLSDIWLGEQV----------------YALVVKM---- 279

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
                     R A      N   ++ + C   GN+E  + A + L+    + L +Y  ++
Sbjct: 280 ----------RLASINCVGNSLISMYSRC---GNMENARKAFDVLF---EKNLVSYNTIV 323

Query: 543 NIYNSSGKLKEAAEVIRTLRRKG 565
           N Y  S   +EA E+   +   G
Sbjct: 324 NAYAKSLNSEEAFELFNEIEGAG 346



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 111/223 (49%), Gaps = 7/223 (3%)

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
           +++  V W+ +I+ YA +  + EA+  +++M + G   + + F+ + R C+   ++   K
Sbjct: 3   NKRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGK 62

Query: 353 QAHAGLVRHG-FGLDIVANSALVDFYSKW-GRIEDARHVFDKMLCKNVISWNALIAGYGN 410
                L++ G F  D+    AL+D + K  G +E A  VFD+M  +NV++W  +I  +  
Sbjct: 63  IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQ 122

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
            G   +AV+LF  M+L+G  P+  T   V+SAC+  GL   G + F  +     +     
Sbjct: 123 LGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQ-FHCLVMKSGLDLDVC 181

Query: 471 HYACMIELLGR---EGLLDEAFALIRGAPFKTTKNMWAALLTA 510
               ++++  +   +G +D+A  +    P     + W A++T 
Sbjct: 182 VGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMS-WTAIITG 223


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/636 (37%), Positives = 366/636 (57%), Gaps = 37/636 (5%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           ++ L   KR +EA+EL    +        +  Y  LI+AC+  R++   +RV ++  ++ 
Sbjct: 62  VDVLCQQKRVKEAVELLHRTDHRPS----ARVYSTLIAACVRHRALELGRRVHAHTKASN 117

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F P +++ NR+L M+ +CG ++DA+ LFDEM  R+L S N +I G    G   +A  LF 
Sbjct: 118 FVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFD 177

Query: 221 DL--WEEFS-DCGSRTFATMIRASAGLELISV---------------------------- 249
           ++   + FS +     + T  +    LEL  V                            
Sbjct: 178 EMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLR 237

Query: 250 -GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
            GK++H   ++     +  V  AL+D+Y KCGS+++A+G+FD+M ++  V W T+I    
Sbjct: 238 LGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCF 297

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
             G  EE   L+ ++  SGV+ + +TF+ ++  C   A+    K+ H  ++  G+     
Sbjct: 298 EDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSF 357

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
           A SALV  YSK G    AR VF++M   +++SW +LI GY  +G+ +EA+  FE +L +G
Sbjct: 358 AISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSG 417

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
            +P+ VT++ VLSAC+ +GL ++G E F S+   H +   A HYAC+I+LL R G   EA
Sbjct: 418 TKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEA 477

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
             +I   P K  K +WA+LL  CR++GNLEL K AA+ LY +EPE  + Y+ L NIY ++
Sbjct: 478 ENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANA 537

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           G   E A V + +   G+   P  SWIE+K+Q HVFL GD SH +T +I+  +  +  +I
Sbjct: 538 GLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKI 597

Query: 609 SKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
            + GYVP+   +L DV +EQ+++ L YHSEKLAV FG+I+T   TP+++ ++ R C DCH
Sbjct: 598 KEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGIISTPPGTPIKVFKNLRTCVDCH 657

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            AIK I+ +  R+I VRD++RFH F+DG CSC DYW
Sbjct: 658 TAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 81/158 (51%), Gaps = 14/158 (8%)

Query: 314 EEALDLYYEMR--DSGVKMDHFT--------FSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           EEA+D+  + +     V++ H T        +S +I  C R  +LE  ++ HA      F
Sbjct: 59  EEAVDVLCQQKRVKEAVELLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNF 118

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
              +  ++ L+D Y+K G + DA+ +FD+M  +++ SWN +I GY   GR E+A +LF++
Sbjct: 119 VPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDE 178

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           M     + ++ ++ A +S            E+F+ M R
Sbjct: 179 M----PQRDNFSWNAAISGYVTHNQPREALELFRVMQR 212


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/611 (37%), Positives = 361/611 (59%), Gaps = 32/611 (5%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G +  S T+  L+ +C  L S  E K++ +++L  GF  D+++   ++ M+ + G M +A
Sbjct: 124 GVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNA 183

Query: 185 -------------------------------RRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
                                          R+LFDEMP +++VS N +IAG    G   
Sbjct: 184 QLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSK 243

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA LLF D+ +        T  +++ A A    + +G  + S     G   N+ +  ALI
Sbjct: 244 EALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALI 303

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           DMYSKCG ++ A+ +FD+M E+  + WN +I GY      +EAL L+ EM  SGV+    
Sbjct: 304 DMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEI 363

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           TF  I+  C  L +++  K  HA + ++   +    +++L+D Y+K G I  AR VFD M
Sbjct: 364 TFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGM 423

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             K++ SWNA+I G   HG+ ++A ELF +M  +G+ PN +TF+ +LSAC  +GL + G 
Sbjct: 424 KIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQ 483

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           + F SM +D+KI P++ HY CMI+LLGR GL +EA +L++    K    +W +LL ACR 
Sbjct: 484 QFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRD 543

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACS 573
           +G +ELG+  AE+L+ +EP+    YV+L NIY  +GK  + A +   L  +G++ +P C+
Sbjct: 544 HGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCT 603

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVL 632
            IEV    H FL GD+ H Q+++IYR ++ +  ++   G+V +   +L D+DE+ ++  L
Sbjct: 604 TIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGAL 663

Query: 633 SYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHF 692
           S+HSEKLA+AFGLI+T   TP++I+++ R+C +CH+A KLI+ +  REI+ RD +RFHHF
Sbjct: 664 SHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHF 723

Query: 693 KDGMCSCGDYW 703
           KDG CSC DYW
Sbjct: 724 KDGSCSCNDYW 734



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 164/320 (51%), Gaps = 7/320 (2%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R +EAL LFE +  +       ST  +++SAC    ++     + S++   G   +L + 
Sbjct: 241 RSKEALLLFEDMR-KANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLV 299

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N ++ M+ +CG +  AR LFD+M ER+++S N++I G      Y EA  LF ++     +
Sbjct: 300 NALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVE 359

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               TF +++ + A L  I +GK +H+   K     +  +S +LID+Y+KCG+I  A+ V
Sbjct: 360 PTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQV 419

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD M  K+   WN +I G A+HG +++A +L+ +M   G++ +  TF  I+  C     +
Sbjct: 420 FDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLV 479

Query: 349 EHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIA 406
           +  +Q  + +V+ +           ++D   + G  E+A  +   M  K +   W +L+ 
Sbjct: 480 DLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLG 539

Query: 407 GYGNHGR---GEEAVE-LFE 422
              +HGR   GE   E LFE
Sbjct: 540 ACRDHGRVELGELVAERLFE 559



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 121/245 (49%), Gaps = 38/245 (15%)

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDM--YSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
           I   KQ+H+  +K G  + +F    LI+    S+ G I  A  +F+ + E     WN++I
Sbjct: 42  IRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMI 101

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
            G ++      AL  +  M  SGV+ + +TF  +++ C +LAS    KQ HA +++ GF 
Sbjct: 102 RGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFV 161

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL-------------------- 404
            D+  +++L++ Y++ G + +A+ VFD+   ++ IS+ AL                    
Sbjct: 162 SDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEM 221

Query: 405 -----------IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS-----GL 448
                      IAGY   GR +EA+ LFE M    + PN  T ++VLSAC++S     G 
Sbjct: 222 PVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGN 281

Query: 449 SERGW 453
           S R W
Sbjct: 282 SMRSW 286



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 111/231 (48%), Gaps = 9/231 (3%)

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF--YSKWGRIEDARHVFDKMLCK 396
           +++ ++  S+   KQ HA +++ G    + A S L++F   S+ G I  A  +F+ +   
Sbjct: 33  LKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEP 92

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           N+  WN++I G         A+  F +M+ +G+ PN  TF  +L +C++   +  G +I 
Sbjct: 93  NLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIH 152

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
             + +   +    +H + +I +  + G ++ A  +   + F+   + + AL+    + G 
Sbjct: 153 AHVLKLGFVSDVFIHTS-LINMYAQSGEMNNAQLVFDQSNFRDAIS-FTALIAGYALWGY 210

Query: 517 LELGKFAAEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           ++     A +L+   P K + ++  ++  Y   G+ KEA  +   +R+  +
Sbjct: 211 MD----RARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANV 257


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/594 (38%), Positives = 360/594 (60%), Gaps = 3/594 (0%)

Query: 112  EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKR-VFSYMLSTGFEPDLYMRNR 170
            E++ LF  L  EG       T  +++ AC  L     + R +  + L TG   D ++   
Sbjct: 988  ESVNLFIDLLHEG-LKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATT 1046

Query: 171  VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
            ++ ++ + G M +A  LF    + +L   N ++ G I   D  +A  LF  + +      
Sbjct: 1047 LIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSD 1106

Query: 231  SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
              T AT  +A   L L+  GKQ+H+ A+K GF  ++ V+  ++DMY KCG + +A  VF+
Sbjct: 1107 QITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFN 1166

Query: 291  EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
             +S    V W ++I+G   +G  ++AL +Y+ MR S V  D +TF+ +I+  + + +LE 
Sbjct: 1167 YISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQ 1226

Query: 351  AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
             +Q HA +++     D    ++LVD Y+K G IEDA  +F KM  +N+  WNA++ G   
Sbjct: 1227 GRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQ 1286

Query: 411  HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
            HG  EEAV LF+ M  +G+ P+ V+F+ +LSACS +GL+   +E   SM  D+ I+P   
Sbjct: 1287 HGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIE 1346

Query: 471  HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
            HY+C+++ LGR GL+ EA  +I   PFK + ++  ALL ACR+ G++E GK  A +L+ +
Sbjct: 1347 HYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFAL 1406

Query: 531  EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
            EP   + YV+L NIY ++ +  +  +  + ++RK ++  P  SWI+VK   H+F+  D+S
Sbjct: 1407 EPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRS 1466

Query: 591  HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTS 649
            H Q   IY KV+ MM  I + GYVP+ + +L DV DE+++R L YHSEKLA+A+GLI+T 
Sbjct: 1467 HPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTP 1526

Query: 650  DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              T ++++++ R+C DCHNAIK I+ V  REIV+RDA+RFHHF+DG+CSCGDYW
Sbjct: 1527 ASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 1580



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 232/440 (52%), Gaps = 8/440 (1%)

Query: 126  FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
             D  + T   +++A  G   +   K+V    + +G + D+ + N ++ M+ + G    AR
Sbjct: 900  IDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAR 959

Query: 186  RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL- 244
             +F++M   +L+S N +I+    S    E+  LF+DL  E       T A+++RA + L 
Sbjct: 960  EVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLI 1019

Query: 245  ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
            + +++ +Q+H  ALK G   + FV+  LID+YSK G +E+A+ +F    +     WN ++
Sbjct: 1020 DGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMM 1079

Query: 305  AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
             GY +    ++AL+L+  +  SG K D  T +   + C  L  L+  KQ HA  ++ GF 
Sbjct: 1080 FGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFD 1139

Query: 365  LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
             D+  NS ++D Y K G + +A  VF+ +   + ++W ++I+G  ++G  ++A+ ++ +M
Sbjct: 1140 SDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRM 1199

Query: 425  LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR-DHKIKPRAMHYACMIELLGREG 483
              + + P+  TF  ++ A S     E+G ++  ++ + D    P       ++++  + G
Sbjct: 1200 RQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSLVDMYAKCG 1257

Query: 484  LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVL 541
             +++A+ L +    +    +W A+L     +GN E  +  F + K +G+EP+++S ++ +
Sbjct: 1258 NIEDAYRLFKKMNVRNIA-LWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVS-FIGI 1315

Query: 542  LNIYNSSGKLKEAAEVIRTL 561
            L+  + +G   EA E + ++
Sbjct: 1316 LSACSHAGLTSEAYEYLHSM 1335



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 135/248 (54%), Gaps = 1/248 (0%)

Query: 209  SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
            +GD   A   F+++     D  + T   ++ A AG + + +GKQ+H  A+K G   +V V
Sbjct: 882  AGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSV 941

Query: 269  SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
            + +L++MYSK G    A+ VF++M     + WN++I+  A     EE+++L+ ++   G+
Sbjct: 942  ANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGL 1001

Query: 329  KMDHFTFSMIIRICTRLAS-LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
            K DHFT + ++R C+ L   L  ++Q H   ++ G   D    + L+D YSK G++E+A 
Sbjct: 1002 KPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAE 1061

Query: 388  HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
             +F      ++  WNA++ GY     G++A+ELF  +  +G + + +T      AC    
Sbjct: 1062 FLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLV 1121

Query: 448  LSERGWEI 455
            L ++G +I
Sbjct: 1122 LLDQGKQI 1129



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 5/222 (2%)

Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
           ++R +     + +GK  H+  +  G   + F+S  L+ MYSKCGS+  A+ VFD   E+ 
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 297 TVGWNTIIAGYAL-----HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
            V WN I+  YA       G ++E L L+  +R S       T + ++++C     L  A
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           +  H   ++ G   D+  + ALV+ YSK GR+ DAR +FD M  ++V+ WN ++ GY   
Sbjct: 747 EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 806

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
           G  +EA +LF +   +G+RP+  +   +L+  S     E  W
Sbjct: 807 GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKW 848



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 113/214 (52%), Gaps = 16/214 (7%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           ST++ L+  C   R           ++ +G   D ++ N +L M+ +CG +  AR++FD 
Sbjct: 633 STHNLLLGKCTHAR-----------IVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDT 681

Query: 191 MPERNLVSCNMII---AGMIDS--GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
            PER+LV+ N I+   A  +DS  G+  E   LF  L          T A +++      
Sbjct: 682 TPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSG 741

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
            +   + +H  A+K+G   +VFVS AL+++YSKCG + DA+ +FD M E+  V WN ++ 
Sbjct: 742 CLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLK 801

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           GY   G  +EA  L+ E   SG++ D F+  +I+
Sbjct: 802 GYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLIL 835


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/597 (39%), Positives = 363/597 (60%), Gaps = 2/597 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N   + AL+L   ++ E G    S T  +++ A   ++++R  + +  Y   +GFE  + 
Sbjct: 224 NGHAKRALQLVLQMQ-EAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVN 282

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N +L M+ +CG    AR +F  M  + +VS N +I G   +G+  EAF  FL + +E 
Sbjct: 283 VTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEG 342

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 T   ++ A A L  +  G  +H    K+    NV V  +LI MYSKC  ++ A 
Sbjct: 343 EVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAA 402

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +F+ + EKT V WN +I GYA +G  +EAL+L+  M+  G+K+D FT   +I      +
Sbjct: 403 SIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFS 461

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
               AK  H   VR     ++  ++ALVD Y+K G I+ AR +FD M  ++VI+WNA+I 
Sbjct: 462 VNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMID 521

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GYG HG G+E ++LF +M    ++PN +TFL+V+SACS SG  E G  +F+SM  D+ ++
Sbjct: 522 GYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLE 581

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P   HY+ M++LLGR G LD+A+  I+  P K   ++  A+L AC+++ N+ELG+ AA+K
Sbjct: 582 PTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQK 641

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           L+ ++P++   +V+L NIY S+    + A+V   +  KGL   P CSW+E++ + H F S
Sbjct: 642 LFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYS 701

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLI 646
           G  +H ++K+IY  ++ +  EI   GYVP+  ++    ++ ++++LS HSE+LA+AFGL+
Sbjct: 702 GSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSIHDVEEDVKKQLLSSHSERLAIAFGLL 761

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           NTS  T L I ++ R+C DCH+  K I++VTGREI+VRD  RFHHFK+G CSCGDYW
Sbjct: 762 NTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 181/371 (48%), Gaps = 3/371 (0%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           S +E+ ++  +++  GF  +   + +V+ +  + G   +A R+F+ +  +  V  ++++ 
Sbjct: 59  SKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLK 118

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
           G   +    +A   FL +  +        +A +++       +  G+++H   +  GF  
Sbjct: 119 GYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGFES 178

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           N+FV  A++ +Y+KC  I++A  +F+ M  K  V W T++AGYA +G+++ AL L  +M+
Sbjct: 179 NLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQ 238

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           ++G K D  T   I+     + +L   +  H    R GF   +   +AL+D Y K G   
Sbjct: 239 EAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSAR 298

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            AR VF  M  K V+SWN +I G   +G  EEA   F +ML  G  P  VT + VL AC+
Sbjct: 299 IARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACA 358

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
             G  ERGW + + + +  K+         +I +  +   +D A ++      + T   W
Sbjct: 359 NLGDLERGWFVHKLLDK-LKLDSNVSVMNSLISMYSKCKRVDIAASIFNN--LEKTNVTW 415

Query: 505 AALLTACRVNG 515
            A++     NG
Sbjct: 416 NAMILGYAQNG 426


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/600 (36%), Positives = 367/600 (61%), Gaps = 5/600 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N  +++AL ++  ++        S T+  L+ AC GL  ++  + V + +   GF+ D++
Sbjct: 97  NNHFQDALLMYSNMQL-ARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155

Query: 167 MRNRVLLMHVRCGMMIDARRLFD--EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           ++N ++ ++ +C  +  AR +F+   +PER +VS   I++    +G+ +EA  +F  + +
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRK 215

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                      +++ A   L+ +  G+ +H+  +KMG      +  +L  MY+KCG +  
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+ +FD+M     + WN +I+GYA +GY+ EA+D+++EM +  V+ D  + +  I  C +
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQ 335

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           + SLE A+  +  + R  +  D+  +SAL+D ++K G +E AR VFD+ L ++V+ W+A+
Sbjct: 336 VGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAM 395

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I GYG HGR  EA+ L+  M   G+ PN VTFL +L AC+ SG+   GW  F  M+ DHK
Sbjct: 396 IVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA-DHK 454

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           I P+  HYAC+I+LLGR G LD+A+ +I+  P +    +W ALL+AC+ + ++ELG++AA
Sbjct: 455 INPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAA 514

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
           ++L+ ++P    +YV L N+Y ++      AEV   ++ KGL     CSW+EV+ +   F
Sbjct: 515 QQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAF 574

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAF 643
             GD+SH + +EI R+V+ +   + + G+V  +   L D+ DE+ +  L  HSE++A+A+
Sbjct: 575 RVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAY 634

Query: 644 GLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           GLI+T   TPL+I ++ R C +CH A KLI+ +  REIVVRD +RFHHFKDG+CSCGDYW
Sbjct: 635 GLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 121/480 (25%), Positives = 235/480 (48%), Gaps = 48/480 (10%)

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
           ++K++ + +L  G +   ++  +++      G +  AR++FD++P   +   N II G  
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
            +  + +A L++ ++        S TF  +++A +GL  + +G+ +H+   ++GF  +VF
Sbjct: 96  RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155

Query: 268 VSCALIDMYSKCGSIEDAQGVFD--EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
           V   LI +Y+KC  +  A+ VF+   + E+T V W  I++ YA +G   EAL+++ +MR 
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRK 215

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
             VK D      ++   T L  L+  +  HA +V+ G  ++     +L   Y+K G++  
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           A+ +FDKM   N+I WNA+I+GY  +G   EA+++F +M+   +RP+ ++  + +SAC++
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQ 335

Query: 446 SGLSERGWEIFQSMSR------------------------------DHKIKPRAMHYACM 475
            G  E+   +++ + R                              D  +    + ++ M
Sbjct: 336 VGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAM 395

Query: 476 IELLGREGLLDEAFALIRG---APFKTTKNMWAALLTACRVNGNLELGKFAAEKL--YGM 530
           I   G  G   EA +L R             +  LL AC  +G +  G +   ++  + +
Sbjct: 396 IVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMADHKI 455

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR-RKGLR----MLPACSWIEVKKQPHVFL 585
            P++  +Y  ++++   +G L +A EVI+ +  + G+     +L AC     KK  HV L
Sbjct: 456 NPQQ-QHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSAC-----KKHRHVEL 509


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/610 (37%), Positives = 358/610 (58%), Gaps = 37/610 (6%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR---------CGMM 181
           + + +++ +C  +  +R  + V  +++  G + DLY  N ++ M+ +          G +
Sbjct: 106 NVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNV 165

Query: 182 ID---------------------------ARRLFDEMPERNLVSCNMIIAGMIDSGDYLE 214
            D                            RR+F+ MP +++VS N IIAG   SG Y +
Sbjct: 166 FDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYED 225

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
           A  +  ++        S T ++++   +    +  GK++H   ++ G   +V++  +L+D
Sbjct: 226 ALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVD 285

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MY+K   IED++ VF  +  +  + WN+++AGY  +G   EAL L+ +M  + VK     
Sbjct: 286 MYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVA 345

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           FS +I  C  LA+L   KQ H  ++R GFG +I   SALVD YSK G I+ AR +FD+M 
Sbjct: 346 FSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMN 405

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
             + +SW A+I G+  HG G EAV LFE+M   G++PN V F+AVL+ACS  GL +  W 
Sbjct: 406 VLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWG 465

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
            F SM++ + +     HYA + +LLGR G L+EA+  I     + T ++W+ LL++C V+
Sbjct: 466 YFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVH 525

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
            NLEL +  AEK++ ++ E +  YV++ N+Y S+G+ KE A++   +R+KGLR  PACSW
Sbjct: 526 KNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSW 585

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY 634
           IE+K + H F+SGD+SH    +I   +  +M ++ K GYV +   +L DVDE+ +R L +
Sbjct: 586 IEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLF 645

Query: 635 -HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
            HSE+LAVAFG+INT   T +++ ++ RIC DCH AIK I+ +T REI+VRD SRFHHF 
Sbjct: 646 GHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFN 705

Query: 694 DGMCSCGDYW 703
            G CSCGDYW
Sbjct: 706 RGNCSCGDYW 715



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 39/257 (15%)

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
           T+I+    ++  S  KQLH+  ++     +   S  +I +Y+    + +A  +F  +   
Sbjct: 10  TLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASI-VISIYTNLKLLHEALLLFKTLKSP 68

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             + W ++I  +       +AL  + EMR SG   DH  F  +++ CT +  L   +  H
Sbjct: 69  PVLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVH 128

Query: 356 AGLVRHGFGLDIVANSALVDFYSK------------------------------------ 379
             +VR G   D+   +AL++ Y+K                                    
Sbjct: 129 GFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIM 188

Query: 380 -WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
            +G I+  R VF+ M  K+V+S+N +IAGY   G  E+A+ +  +M    ++P+  T  +
Sbjct: 189 PFG-IDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSS 247

Query: 439 VLSACSRSGLSERGWEI 455
           VL   S      +G EI
Sbjct: 248 VLPIFSEYVDVIKGKEI 264



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 60/251 (23%), Positives = 115/251 (45%), Gaps = 7/251 (2%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S +   V N RY EAL LF  +        G+  + ++I AC  L ++   K++  Y+L 
Sbjct: 313 SLVAGYVQNGRYNEALRLFRQM-VTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLR 371

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF  ++++ + ++ M+ +CG +  AR++FD M   + VS   II G    G   EA  L
Sbjct: 372 GGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSL 431

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM-GFGDNVFVSCALIDMYS 277
           F ++  +        F  ++ A + + L+       +   K+ G    +    A+ D+  
Sbjct: 432 FEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLG 491

Query: 278 KCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
           + G +E+A     +M  E T   W+T+++  ++H    + L+L  ++ +    +D     
Sbjct: 492 RAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVH----KNLELAEKVAEKIFTVDSENMG 547

Query: 337 MIIRICTRLAS 347
             + +C   AS
Sbjct: 548 AYVLMCNMYAS 558


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 230/581 (39%), Positives = 361/581 (62%), Gaps = 2/581 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G+   + T  A + +C GL + +  K V    L   ++ DLY+   +L ++ + G + +A
Sbjct: 200 GYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEA 259

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAG 243
           ++ F+EMP+ +L+  +++I+    S    EA  LF  + +      +  TFA++++A A 
Sbjct: 260 QQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACAS 319

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L L+++G Q+HSC LK+G   NVFVS AL+D+Y+KCG IE++  +F   +EK  V WNTI
Sbjct: 320 LVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTI 379

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I GY   G  E+AL+L+  M    ++    T+S ++R    L +LE  +Q H+  ++  +
Sbjct: 380 IVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKTMY 439

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             D V  ++L+D Y+K GRI+DAR  FDKM  ++ +SWNALI GY  HG G EA+ LF+ 
Sbjct: 440 NKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDM 499

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           M  +  +PN +TF+ VLSACS +GL ++G   F+SM +D+ I+P   HY CM+ LLGR G
Sbjct: 500 MQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSG 559

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
             DEA  LI   PF+ +  +W ALL AC ++ NL+LGK  A+++  MEP+  + +V+L N
Sbjct: 560 QFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSN 619

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           +Y ++ +    A V + +++K ++  P  SW+E +   H F  GD SH   K I+  ++ 
Sbjct: 620 MYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNIKLIFAMLEW 679

Query: 604 MMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           +  +    GYVP+   +L DV D++++R+L  HSE+LA+AFGLI       ++I+++ RI
Sbjct: 680 LYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGCSIRIIKNLRI 739

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH  IKL++ +  REIV+RD +RFHHF+ G+CSCGDYW
Sbjct: 740 CVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 171/327 (52%), Gaps = 1/327 (0%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S +Y  ++   I  R     K +  ++L  G   DL+ +N +L  +V  G + DA +LFD
Sbjct: 3   SHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFD 62

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
           EMP  N VS   +  G   S  +  A  L L L+ E  +     F T+++    ++L   
Sbjct: 63  EMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADT 122

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
              +H+   K+G   + FV  ALID YS CG+++ A+ VFD +  K  V W  ++A YA 
Sbjct: 123 CLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAE 182

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +   E++L L+ +MR  G + ++FT S  ++ C  L + +  K  H   ++  +  D+  
Sbjct: 183 NYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYV 242

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG- 428
             AL++ Y+K G I +A+  F++M   ++I W+ +I+ Y    + +EA+ELF +M  +  
Sbjct: 243 GIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSV 302

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEI 455
           + PN+ TF +VL AC+   L   G +I
Sbjct: 303 VVPNNFTFASVLQACASLVLLNLGNQI 329



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 54/111 (48%)

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
           MD  +++ +++   R       K  H  +++HG  LD+ A + L++ Y  +G +EDA  +
Sbjct: 1   MDSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKL 60

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
           FD+M   N +S+  L  G+    + + A  L  ++   G   N   F  +L
Sbjct: 61  FDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLL 111


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/573 (37%), Positives = 357/573 (62%), Gaps = 2/573 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            Y   I+AC   +++ + ++V +++ S+ F  D ++ N ++ ++ +CG +++AR++FDEM
Sbjct: 53  VYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEM 112

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
             +++VS   +IAG   +    EA  L   + +        TFA++++A+       +G+
Sbjct: 113 RRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGR 172

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           Q+H+ A+K  + ++V+V  AL+DMY++CG ++ A  VFD++  K  V WN +I+G+A  G
Sbjct: 173 QIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKG 232

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             E AL  + EM  +G +  HFT+S +     RL +LE  K  HA +++    +   A +
Sbjct: 233 DGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGN 292

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
            L+D Y+K G + DAR VFD++  K++++WN ++  +  +G G+EAV  FE+M  +G+  
Sbjct: 293 TLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYL 352

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           N VTFL +L+ACS  GL + G   F+ M +++ ++P   H+  ++ LLGR GLL+ A   
Sbjct: 353 NQVTFLCILTACSHGGLVKEGKRYFE-MMKEYDLEPEIDHFVTVVALLGRAGLLNFALVF 411

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           I   P + T  +W ALL ACR++ N ++G+FAA+ ++ ++P+     V+L NIY S+G+ 
Sbjct: 412 IFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQW 471

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
             AA V R ++  G++  PACSW+E++   H+F++ D +H + +EIY+   ++  +I K 
Sbjct: 472 DAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQISKKIRKE 531

Query: 612 GYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           GYVP+   +L  VD+QE+   L YHSEKLA+AF LI       ++I+++ RIC DCH+A 
Sbjct: 532 GYVPDMDYVLLRVDDQEREANLQYHSEKLALAFALIEMPAGATIRIMKNIRICGDCHSAF 591

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           K I+ V GREIVVRD +RFHHF +G CSC DYW
Sbjct: 592 KYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 85/187 (45%), Gaps = 1/187 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           GF+    TY ++ S+   L ++ + K V ++M+ +  +   +  N +L M+ + G MIDA
Sbjct: 248 GFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDA 307

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R++FD + +++LV+ N ++      G   EA   F ++ +        TF  ++ A +  
Sbjct: 308 RKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHG 367

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA-QGVFDEMSEKTTVGWNTI 303
            L+  GK+      +      +     ++ +  + G +  A   +F    E T   W  +
Sbjct: 368 GLVKEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGAL 427

Query: 304 IAGYALH 310
           +A   +H
Sbjct: 428 LAACRMH 434


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/548 (39%), Positives = 339/548 (61%), Gaps = 1/548 (0%)

Query: 157  LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF 216
            +  G   D ++   ++ ++ + G M +A  LF      +L S N I+ G I SGD+ +A 
Sbjct: 1064 MKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKAL 1123

Query: 217  LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276
             L++ + E        T     +A+ GL  +  GKQ+H+  +K GF  ++FV+  ++DMY
Sbjct: 1124 RLYILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMY 1183

Query: 277  SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
             KCG +E A+ VF E+     V W T+I+G   +G  E AL  Y++MR S V+ D +TF+
Sbjct: 1184 LKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFA 1243

Query: 337  MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
             +++ C+ L +LE  +Q HA +V+     D    ++LVD Y+K G IEDAR +F +   +
Sbjct: 1244 TLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTR 1303

Query: 397  NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
             + SWNA+I G   HG  +EA++ F+ M   G+ P+ VTF+ VLSACS SGL    +E F
Sbjct: 1304 RIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENF 1363

Query: 457  QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
             SM +++ I+P   HY+C+++ L R G ++EA  +I   PF+ + +M+  LL ACRV  +
Sbjct: 1364 YSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVD 1423

Query: 517  LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
             E GK  AEKL  +EP   + YV+L N+Y ++ + +  A     +R+  ++  P  SW++
Sbjct: 1424 RETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVD 1483

Query: 577  VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYH 635
            +K + H+F++GD+SH +T  IY KV+ +M  I + GYVP+    L DV+E+++   L YH
Sbjct: 1484 LKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLYYH 1543

Query: 636  SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
            SEKLA+A+GL+ T   T L+++++ R+C DCH+AIK I+ V  REIV+RDA+RFHHF++G
Sbjct: 1544 SEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRNG 1603

Query: 696  MCSCGDYW 703
            +CSCGDYW
Sbjct: 1604 ICSCGDYW 1611



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 156/290 (53%), Gaps = 2/290 (0%)

Query: 105  VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
            +++  + +AL L+ IL  E G      T      A  GL  +++ K++ + ++  GF  D
Sbjct: 1114 IVSGDFPKALRLY-ILMQESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLD 1172

Query: 165  LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
            L++ + VL M+++CG M  ARR+F E+P  + V+   +I+G +++G    A   +  +  
Sbjct: 1173 LFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRL 1232

Query: 225  EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                    TFAT+++A + L  +  G+Q+H+  +K+    + FV  +L+DMY+KCG+IED
Sbjct: 1233 SKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIED 1292

Query: 285  AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
            A+G+F   + +    WN +I G A HG ++EAL  +  M+  GV  D  TF  ++  C+ 
Sbjct: 1293 ARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSH 1352

Query: 345  LASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
               +  A +    + + +G   +I   S LVD  S+ GRIE+A  V   M
Sbjct: 1353 SGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSM 1402



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 91/306 (29%), Positives = 150/306 (49%), Gaps = 11/306 (3%)

Query: 148  EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER---------NLVS 198
            E   +FS    TGF PD  +  R L   V+C   I   + F     +         +++ 
Sbjct: 844  EAMLLFSEFHRTGFRPD-DVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIV 902

Query: 199  CNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCAL 258
             N  ++  +  G+  EA   F+D+      C   TF  M+   AGL  + +GKQ+H   +
Sbjct: 903  WNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVM 962

Query: 259  KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
            + G    V V   LI+MY K GS+  A+ VF +M+E   + WNT+I+G  L G  E ++ 
Sbjct: 963  RSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVG 1022

Query: 319  LYYEMRDSGVKMDHFTFSMIIRICTRLASLEH-AKQAHAGLVRHGFGLDIVANSALVDFY 377
            ++  +    +  D FT + ++R C+ L    + A Q HA  ++ G  LD   ++AL+D Y
Sbjct: 1023 MFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVY 1082

Query: 378  SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
            SK G++E+A  +F      ++ SWNA++ GY   G   +A+ L+  M  +G R + +T +
Sbjct: 1083 SKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLV 1142

Query: 438  AVLSAC 443
                A 
Sbjct: 1143 NAAKAA 1148



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 119/228 (52%), Gaps = 5/228 (2%)

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM--S 293
           +++R +     +S+GK+ H+  L  G   + FV+  LI MY+KCGS+  A+ +FD    +
Sbjct: 661 SILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDT 720

Query: 294 EKTTVGWNTIIAGYALHG-YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            +  V WN I++  A H   S +   L+  +R S V     T + + ++C   AS   ++
Sbjct: 721 NRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASE 780

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
             H   V+ G   D+    ALV+ Y+K+G I +AR +FD M  ++V+ WN ++  Y +  
Sbjct: 781 SLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTC 840

Query: 413 RGEEAVELFEQMLLNGMRPNHVTF--LAVLSACSRSGLSERGWEIFQS 458
              EA+ LF +    G RP+ VT   L+ +  C ++ L  + ++ + +
Sbjct: 841 LEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYAT 888



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 108/450 (24%), Positives = 200/450 (44%), Gaps = 53/450 (11%)

Query: 132  TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            T   +   C+   S    + +  Y +  G + D+++   ++ ++ + G++ +AR LFD M
Sbjct: 762  TLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGM 821

Query: 192  PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELI 247
              R++V  N+++   +D+    EA LLF     EF   G R    T  T+ R     + I
Sbjct: 822  AVRDVVLWNVMMKAYVDTCLEYEAMLLF----SEFHRTGFRPDDVTLRTLSRVVKCKKNI 877

Query: 248  SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
               KQ  + A K+              MY   GS                + WN  ++ +
Sbjct: 878  LELKQFKAYATKLF-------------MYDDDGS--------------DVIVWNKALSRF 910

Query: 308  ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
               G + EA+D + +M +S V  D  TF +++ +   L  LE  KQ H  ++R G    +
Sbjct: 911  LQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVV 970

Query: 368  VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
               + L++ Y K G +  AR VF +M   ++ISWN +I+G    G  E +V +F  +L +
Sbjct: 971  SVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRD 1030

Query: 428  GMRPNHVTFLAVLSACSRSGLSERGWEI---FQSMSRDHKIKPRAMHYACMIELLGREGL 484
             + P+  T  +VL ACS     E G+ +     + +    +   +     +I++  + G 
Sbjct: 1031 SLLPDQFTVASVLRACSS---LEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGK 1087

Query: 485  LDEA-FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM--EPEKLSNYVVL 541
            ++EA F  +    F      W A++    V+G+       A +LY +  E  + S+ + L
Sbjct: 1088 MEEAEFLFVNQDGFDLAS--WNAIMHGYIVSGDFP----KALRLYILMQESGERSDQITL 1141

Query: 542  LNIYNSSG---KLKEAAEVIRTLRRKGLRM 568
            +N   ++G    LK+  ++   + ++G  +
Sbjct: 1142 VNAAKAAGGLVGLKQGKQIHAVVVKRGFNL 1171



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 168/369 (45%), Gaps = 32/369 (8%)

Query: 150  KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE--RNLVSCNMIIAGMI 207
            KR  + +L++G  PD ++ N ++ M+ +CG +  AR+LFD  P+  R+LV+ N I++ + 
Sbjct: 676  KRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALA 735

Query: 208  DSGDYL-EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
               D   + F LF  L          T A + +        S  + LH  A+K+G   +V
Sbjct: 736  AHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDV 795

Query: 267  FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
            FV+ AL+++Y+K G I +A+ +FD M+ +  V WN ++  Y       EA+ L+ E   +
Sbjct: 796  FVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRT 855

Query: 327  GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
            G + D  T   + R+     ++   KQ  A                   + +K    +D 
Sbjct: 856  GFRPDDVTLRTLSRVVKCKKNILELKQFKA-------------------YATKLFMYDDD 896

Query: 387  RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
                      +VI WN  ++ +   G   EAV+ F  M+ + +  + +TF+ +L+  +  
Sbjct: 897  --------GSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGL 948

Query: 447  GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
               E G +I   + R    +  ++   C+I +  + G +  A ++  G   +     W  
Sbjct: 949  NCLELGKQIHGIVMRSGLDQVVSVG-NCLINMYVKAGSVSRARSVF-GQMNEVDLISWNT 1006

Query: 507  LLTACRVNG 515
            +++ C ++G
Sbjct: 1007 MISGCTLSG 1015


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/573 (37%), Positives = 354/573 (61%), Gaps = 1/573 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY +++  C  L ++   +++ + ++ +GF+ ++Y+ + ++ M+ + G +  AR +   +
Sbjct: 417 TYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRL 476

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            E ++VS   +IAG      + EA  LF ++  +     +  F++ I A AG++ ++ G+
Sbjct: 477 REEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQ 536

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           Q+H+ +   G+ +++ +  AL+ +Y++CG  +DA   F+++  K  + WN +I+G+A  G
Sbjct: 537 QIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSG 596

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
           + EEAL ++ +M  +GV+ + FTF   +      A+++  KQ HA +++ G+  +  A++
Sbjct: 597 HCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASN 656

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
            L+  YSK G IEDA+  F +M  KNV+SWNA+I GY  HG G EAV LFE+M   G+ P
Sbjct: 657 VLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMP 716

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           NHVTF+ VLSACS  GL   G   F+SMS++H + P+  HY C+++LLGR  LL  A   
Sbjct: 717 NHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREF 776

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           I   P +    +W  LL+AC V+ N+E+G+FAA  L  +EPE  + YV+L N+Y  SGK 
Sbjct: 777 IEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKW 836

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
                  + ++ +G++  P  SWIEVK   H F  GD+ H   ++IY  +D +     + 
Sbjct: 837 DYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEI 896

Query: 612 GYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           GYV +   LL DV+++++   +Y HSEKLAVAFGL++ ++  P++++++ R+C DCHN I
Sbjct: 897 GYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVCNDCHNWI 956

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           K ++ ++ R IVVRDA RFHHF+ G+CSC DYW
Sbjct: 957 KFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 131/455 (28%), Positives = 235/455 (51%), Gaps = 8/455 (1%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           AL+LFE ++ +        T  +L+SAC  + +  + K++ SY++  G   DL +   +L
Sbjct: 298 ALQLFEKMQLDC-MKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLL 356

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            ++V+C  +  A   F      N+V  N+++      G+  E++ +FL +  E       
Sbjct: 357 DLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQY 416

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T+ +++R    L  + +G+Q+H+  +K GF  NV+V   LIDMY+K G ++ A+G+   +
Sbjct: 417 TYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRL 476

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            E+  V W  +IAGY  H    EAL L+ EM + G++ D+  FS  I  C  + +L   +
Sbjct: 477 REEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQ 536

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           Q HA     G+  D+   +ALV  Y++ GR +DA   F+K+  K+ ISWNALI+G+   G
Sbjct: 537 QIHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSG 596

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD-HKIKPRAMH 471
             EEA+++F QM   G+  N  TF + +SA + +   ++G +I   M +  +  +  A +
Sbjct: 597 HCEEALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASN 656

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN--GNLELGKFAAEKLYG 529
              +I L  + G +++A       P K   + W A++T    +  G+  +  F   K  G
Sbjct: 657 --VLITLYSKCGSIEDAKREFFEMPEKNVVS-WNAMITGYSQHGYGSEAVSLFEEMKQLG 713

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           + P  ++ +V +L+  +  G + E     R++ ++
Sbjct: 714 LMPNHVT-FVGVLSACSHVGLVNEGLSYFRSMSKE 747



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 129/478 (26%), Positives = 237/478 (49%), Gaps = 37/478 (7%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           E G      TY  L   C    S+ + K++ + +  +GF+ +  + +R++ +++  G + 
Sbjct: 3   ERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVD 62

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA-S 241
           +A +LFD++P  N+   N +I+G++      +   LF  +  E       TFA+++RA S
Sbjct: 63  NAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACS 122

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
            G     V +Q+H+  +  GFG +  V   LID+YSK G ++ A+ VF+ +  K +V W 
Sbjct: 123 GGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWV 182

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
            +I+G + +G  +EA+ L+ +M  S V    + FS ++  CT++   +  +Q H  +V+ 
Sbjct: 183 AMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKW 242

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           G   +    +ALV  YS+WG +  A  +F KM  ++ IS+N+LI+G    G  + A++LF
Sbjct: 243 GLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLF 302

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERG-----WEIFQSMSRDHKIKPRAMH----- 471
           E+M L+ M+P+ VT  ++LSAC+  G   +G     + I   MS D  I+   +      
Sbjct: 303 EKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKC 362

Query: 472 --------------------YACMIELLGREGLLDEA---FALIRGAPFKTTKNMWAALL 508
                               +  M+   G+ G L E+   F  ++       +  + ++L
Sbjct: 363 FDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSIL 422

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYV--VLLNIYNSSGKLKEAAEVIRTLRRK 564
             C   G L+LG+    ++      + + YV  VL+++Y   G+L  A  +++ LR +
Sbjct: 423 RTCTSLGALDLGEQIHTQVI-KSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREE 479



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 203/394 (51%), Gaps = 3/394 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV-KRVFSYMLST 159
           I  L+  K   + L LF ++  E       ST+ +++ AC G ++  +V +++ + ++  
Sbjct: 83  ISGLLAKKLASQVLGLFSLMITEN-VTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHH 141

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           GF     + N ++ ++ + G +  A+ +F+ +  ++ VS   +I+G+  +G   EA LLF
Sbjct: 142 GFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLF 201

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
             + +         F++++ A   +EL  +G+QLH   +K G     FV  AL+ +YS+ 
Sbjct: 202 CQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRW 261

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           G++  A+ +F +M  +  + +N++I+G A  G+S+ AL L+ +M+   +K D  T + ++
Sbjct: 262 GNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLL 321

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
             C  + +    KQ H+ +++ G   D++   +L+D Y K   IE A   F     +NV+
Sbjct: 322 SACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVV 381

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
            WN ++  YG  G   E+  +F QM + G+ PN  T+ ++L  C+  G  + G +I   +
Sbjct: 382 LWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQV 441

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
            +    +      + +I++  + G LD A  +++
Sbjct: 442 IKS-GFQFNVYVCSVLIDMYAKHGELDTARGILQ 474



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 86/193 (44%), Gaps = 1/193 (0%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M + G++ +  T+  +   C    SL  AK+ HA + + GF  + V  S L+D Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           +++A  +FD +   NV  WN +I+G        + + LF  M+   + P+  TF +VL A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
           CS      +  E   +    H      +    +I+L  + G +D A  L+    F     
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLA-KLVFERLFLKDSV 179

Query: 503 MWAALLTACRVNG 515
            W A+++    NG
Sbjct: 180 SWVAMISGLSQNG 192


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/606 (37%), Positives = 367/606 (60%), Gaps = 7/606 (1%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I +L  N R +EAL    +L  E GF      YDAL++AC+  R++R+ +RV ++M+ T 
Sbjct: 27  ISQLCSNGRLQEALLEMAMLGPEMGF----HGYDALLNACLDKRALRDGQRVHAHMIKTR 82

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           + P  Y+R R+L+ + +C  + DAR++ DEMPE+N+VS   +I+    +G   EA  +F 
Sbjct: 83  YLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALTVFA 142

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           ++          TFAT++ +      + +GKQ+H   +K  +  ++FV  +L+DMY+K G
Sbjct: 143 EMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAG 202

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            I++A+ +F+ + E+  V    IIAGYA  G  EEAL++++ +   G+  ++ T++ ++ 
Sbjct: 203 QIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLT 262

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
             + LA L+H KQAH  ++R       V  ++L+D YSK G +  AR +FD M  +  IS
Sbjct: 263 ALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAIS 322

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           WNA++ GY  HG G E +ELF  M     ++P+ VT LAVLS CS   + + G  IF  M
Sbjct: 323 WNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGM 382

Query: 460 -SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
            + ++  KP   HY C++++LGR G +DEAF  I+  P K T  +  +LL ACRV+ +++
Sbjct: 383 VAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVD 442

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           +G+    +L  +EPE   NYV+L N+Y S+G+  +   V   + +K +   P  SWI+ +
Sbjct: 443 IGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHE 502

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSE 637
           +  H F + D++H + +E+  K+  + +++ + GYVP+   +L DVD EQ++++L  HSE
Sbjct: 503 QTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSE 562

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+ FGLI T +  P+++ ++ RIC DCHN  K+ + V  RE+ +RD +RFH   DG+C
Sbjct: 563 KLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGIC 622

Query: 698 SCGDYW 703
           SCGDYW
Sbjct: 623 SCGDYW 628


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/600 (36%), Positives = 367/600 (61%), Gaps = 5/600 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N  +++AL ++  ++        S T+  L+ AC GL  ++  + V + +   GF+ D++
Sbjct: 97  NNHFQDALLMYSNMQL-ARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155

Query: 167 MRNRVLLMHVRCGMMIDARRLFD--EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           ++N ++ ++ +C  +  AR +F+   +PER +VS   I++    +G+ +EA  +F  + +
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRK 215

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                      +++ A   L+ +  G+ +H+  +KMG      +  +L  MY+KCG +  
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+ +FD+M     + WN +I+GYA +GY+ EA+D+++EM +  V+ D  + +  I  C +
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQ 335

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           + SLE A+  +  + R  +  D+  +SAL+D ++K G +E AR VFD+ L ++V+ W+A+
Sbjct: 336 VGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAM 395

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I GYG HGR  EA+ L+  M   G+ PN VTFL +L AC+ SG+   GW  F  M+ DHK
Sbjct: 396 IVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMA-DHK 454

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           I P+  HYAC+I+LLGR G LD+A+ +I+  P +    +W ALL+AC+ + ++ELG++AA
Sbjct: 455 INPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAA 514

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
           ++L+ ++P    +YV L N+Y ++      AEV   ++ KGL     CSW+EV+ +   F
Sbjct: 515 QQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAF 574

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAF 643
             GD+SH + +EI R+V+ +   + + G+V  +   L D+ DE+ +  L  HSE++A+A+
Sbjct: 575 RVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAY 634

Query: 644 GLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           GLI+T   TPL+I ++ R C +CH A KLI+ +  REIVVRD +RFHHFKDG+CSCGDYW
Sbjct: 635 GLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 122/480 (25%), Positives = 232/480 (48%), Gaps = 48/480 (10%)

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
           ++K++ + +L  G +   ++  +++      G +  AR++FD++P   +   N II G  
Sbjct: 36  QLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYS 95

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
            +  + +A L++ ++        S TF  +++A +GL  + +G+ +H+   ++GF  +VF
Sbjct: 96  RNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVF 155

Query: 268 VSCALIDMYSKCGSIEDAQGVFD--EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
           V   LI +Y+KC  +  A+ VF+   + E+T V W  I++ YA +G   EAL+++  MR 
Sbjct: 156 VQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRK 215

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
             VK D      ++   T L  L+  +  HA +V+ G  ++     +L   Y+K G++  
Sbjct: 216 MDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVAT 275

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           A+ +FDKM   N+I WNA+I+GY  +G   EA+++F +M+   +RP+ ++  + +SAC++
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQ 335

Query: 446 SGLSERGWEIFQSMSR------------------------------DHKIKPRAMHYACM 475
            G  E+   +++ + R                              D  +    + ++ M
Sbjct: 336 VGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAM 395

Query: 476 IELLGREGLLDEAFALIRG---APFKTTKNMWAALLTACRVNGNLELGK--FAAEKLYGM 530
           I   G  G   EA +L R             +  LL AC  +G +  G   F     + +
Sbjct: 396 IVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMADHKI 455

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR-RKGLR----MLPACSWIEVKKQPHVFL 585
            P++  +Y  ++++   +G L +A EVI+ +  + G+     +L AC     KK  HV L
Sbjct: 456 NPQQ-QHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSAC-----KKHRHVEL 509


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/639 (36%), Positives = 369/639 (57%), Gaps = 46/639 (7%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           Y E ++LF ++  EG        +  +  AC  L++ R  K V+ YMLS GFE +  ++ 
Sbjct: 92  YEETIKLFYLMVNEG-VRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKG 150

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            +L M ++CG M  ARR F+E+  +++   N++++G    G++ +A  +F  +  E    
Sbjct: 151 SILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKP 210

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGD-NVFVSCALIDMYSKCGSIEDAQ-- 286
            S T A+ + A   L L+  G+++H   +K+   D ++ V  +L+D Y+KC S+E A+  
Sbjct: 211 NSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRK 270

Query: 287 -----------------------------------------GVFDEMSEKTTVGWNTIIA 305
                                                     VF E+S +  V WN+II+
Sbjct: 271 FGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIIS 330

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
             A  G S  ALDL  EM  S V+++  T    +  C++LA+L   K+ H  ++R G   
Sbjct: 331 ACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDT 390

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
                ++L+D Y + G I+ +R +FD M  ++++SWN +I+ YG HG G +AV LF+Q  
Sbjct: 391 CNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFR 450

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
             G++PNH+TF  +LSACS SGL E GW+ F+ M  ++ + P    YACM++LL R G  
Sbjct: 451 TMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQF 510

Query: 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
           +E    I   PF+    +W +LL ACR++ N +L ++AA  L+ +EP+   NYV++ NIY
Sbjct: 511 NETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIY 570

Query: 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
           +++G+ ++AA++   ++ +G+   P CSWIEVK++ H F+ GD SH   ++I  K++ + 
Sbjct: 571 SAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLY 630

Query: 606 LEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICC 664
            +I + GYVP+   +L DVDE E+   L  HSEK+A+AFGLI+T+  TPL+I+++ R+C 
Sbjct: 631 FDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCG 690

Query: 665 DCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           DCH+A K I+ V  R+I++RD  RFHHF DG+CSCGDYW
Sbjct: 691 DCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 118/463 (25%), Positives = 233/463 (50%), Gaps = 28/463 (6%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y +++  C  L ++R   +V + ++  G +   ++ +R+L ++ + G + DARR+FD+M 
Sbjct: 13  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 72

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           ERN+ S   I+      GDY E   LF  +  E        F  + +A + L+   VGK 
Sbjct: 73  ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 132

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           ++   L +GF  N  V  +++DM+ KCG ++ A+  F+E+  K    WN +++GY   G 
Sbjct: 133 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 192

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANS 371
            ++AL+++ +M   GVK +  T +  +  CT L+ L H ++ H   ++      D++  +
Sbjct: 193 FKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGN 252

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA--GYGNHGRGEEAVELFEQMLLNG- 428
           +LVD+Y+K   +E AR  F  +   +++SWNA++A  G+  +G G+ A+E F++M +   
Sbjct: 253 SLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACS 312

Query: 429 -----MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD----HKIKPRAMHYACMIELL 479
                   + V + +++SAC++SG S    ++ + M+      + +   +   AC     
Sbjct: 313 VFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAA 372

Query: 480 GREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNY 538
            R+G   E    I      T   +  +L+      G+++     + +++ + P++ L ++
Sbjct: 373 LRQG--KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQ----KSRRIFDLMPQRDLVSW 426

Query: 539 VVLLNIYNSSGKLKEAAEVIRTLRRKGLR--------MLPACS 573
            V++++Y   G   +A  + +  R  GL+        +L ACS
Sbjct: 427 NVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACS 469


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/586 (39%), Positives = 357/586 (60%), Gaps = 13/586 (2%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           ST+   I +C  L  +   K++       G+  D+++ + ++ M+ +CG + DAR+LFDE
Sbjct: 87  STFPCTIKSCSSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDE 146

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL-------WEEFSDC----GSRTFATMIR 239
           +PERN+VS   +I+G + +    EA  LF +        ++E         S     +I 
Sbjct: 147 IPERNVVSWTSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVIS 206

Query: 240 ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
           A A + + SV + +H  A+K GF   + V   L+D Y+KCG I  ++ VFD M E     
Sbjct: 207 ACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCS 266

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSG-VKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
           WN++IA YA +G S EA  L+ +M   G V+ +  T S ++  C    +L+  K  H  +
Sbjct: 267 WNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQV 326

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
           V+     ++V  +++VD Y K GR+E AR  FD++  KNV SW  ++AGYG HG G+EA+
Sbjct: 327 VKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAM 386

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478
           ++F +M+  G++PN++TF++VL+ACS +GL + GW  F  M  +  ++P   HY+CM++L
Sbjct: 387 KVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDL 446

Query: 479 LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538
           LGR G L EA+ LI+    K    +W +LL ACR++ N+ELG+ +A KL+ ++P     Y
Sbjct: 447 LGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYY 506

Query: 539 VVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIY 598
           V+L NIY  +G+  +   +   ++  GL   P  S +E K + HVFL GD+ H Q ++IY
Sbjct: 507 VLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIY 566

Query: 599 RKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIV 657
             +D + +++ + GY+P   ++L DVD E++  VL  HSEKLAVAFG++N+   + +QI+
Sbjct: 567 EYLDELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQII 626

Query: 658 QSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++ RIC DCH AIKLI+ +  REIV+RD+ RFHHFKDG+CSCGDYW
Sbjct: 627 KNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 179/363 (49%), Gaps = 58/363 (15%)

Query: 99  SQIEKLVLNKRYREALELFE--ILEFEGGFD--------VGSSTYDALISAC--IGLRSI 146
           S I   V N+R REA+ LF+  +L  E  +D        V S     +ISAC  + ++S+
Sbjct: 157 SMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSV 216

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
            E   V    +  GFE  L + N ++  + +CG +  +R++FD M E ++ S N +IA  
Sbjct: 217 TEC--VHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVY 274

Query: 207 IDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
             +G  +EAF LF D+ +       + T + ++ A A    + +GK +H   +KM   DN
Sbjct: 275 AQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDN 334

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
           + V  +++DMY KCG +E A+  FD +  K    W  ++AGY +HG+ +EA+ ++YEM  
Sbjct: 335 LVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIR 394

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
            G+K ++ TF  ++  C+           HAGL++ G+                      
Sbjct: 395 CGIKPNYITFVSVLAACS-----------HAGLLKEGW---------------------- 421

Query: 386 ARHVFDKMLCK-----NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
             H F+KM C+      +  ++ ++   G  G  +EA  L ++M    ++P+ + + ++L
Sbjct: 422 --HWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEM---KVKPDFIVWGSLL 476

Query: 441 SAC 443
            AC
Sbjct: 477 GAC 479



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 164/333 (49%), Gaps = 51/333 (15%)

Query: 284 DAQGVFDEMSEKTTV-GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           + + +F +  +KT+V  WN+IIA +A  G S +AL  +  MR   +  +  TF   I+ C
Sbjct: 37  NLRSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSC 96

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
           + L  L   KQ H      G+G DI   SAL+D YSK G + DAR +FD++  +NV+SW 
Sbjct: 97  SSLYDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWT 156

Query: 403 ALIAGYGNHGRGEEAVELFEQMLL-----------NGMRPNHVTFLAVLSACSR------ 445
           ++I+GY  + R  EAV LF++ LL            G+  + V    V+SAC+R      
Sbjct: 157 SMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSV 216

Query: 446 ----SGLS-ERGWEIFQ----------------SMSR---DHKIKPRAMHYACMIELLGR 481
                GL+ ++G+E                   S+SR   D   +     +  +I +  +
Sbjct: 217 TECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQ 276

Query: 482 EGLLDEAFAL----IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
            GL  EAF+L    ++    +      +A+L AC  +G L++GK   +++  ME E   N
Sbjct: 277 NGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELE--DN 334

Query: 538 YVV---LLNIYNSSGKLKEAAEVIRTLRRKGLR 567
            VV   ++++Y   G+++ A +    L+RK ++
Sbjct: 335 LVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVK 367


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/581 (39%), Positives = 347/581 (59%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           E G    S T  +++ A    R +R    V  Y+L  GFE  + +   ++ M+ +CG + 
Sbjct: 124 EEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVS 183

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
            AR +FD M  R +VS N +I G + SGD   A L+F  + +E     + T    + A A
Sbjct: 184 IARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACA 243

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
            L  +  GK +H    ++    +V V  +LI MYSKC  ++ A  +F  +  KT V WN 
Sbjct: 244 DLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNA 303

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I GYA +G   EAL+ + EM+   +K D FT   +I     L+    AK  H  ++R  
Sbjct: 304 MILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRF 363

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
              ++   +ALVD Y+K G I  AR +FD M  ++VI+WNA+I GYG HG G+ +VELF+
Sbjct: 364 LDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFK 423

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           +M    ++PN +TFL  LSACS SGL E G   F+SM +D+ I+P   HY  M++LLGR 
Sbjct: 424 EMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRA 483

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
           G L++A+  I+  P K    ++ A+L AC+++ N++LG+ AA +++ + P+    +V+L 
Sbjct: 484 GRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLA 543

Query: 543 NIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVD 602
           NIY ++    + A+V   + + GL+  P CS +E+  + H F SG  SH Q+K+IY  ++
Sbjct: 544 NIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLE 603

Query: 603 RMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
            ++ EI   GYVP+  ++    D+ + ++L+ HSEKLA+AFGL+NTS  TP+ I ++ R+
Sbjct: 604 TLVDEIRAAGYVPDTNSIHDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRV 663

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCHNA K I++VTGREI+VRD  RFH FKDG+CSCGDYW
Sbjct: 664 CGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 149/294 (50%), Gaps = 4/294 (1%)

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           GK++H   +  GF  N+F    +++MY+KC  I DA  +FD M E+  V WNT+I+GYA 
Sbjct: 49  GKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQ 108

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +G+++ AL L   M + G + D  T   I+        L      H  ++R GF   +  
Sbjct: 109 NGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNV 168

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
           ++ALVD YSK G +  AR +FD M  + V+SWN++I GY   G  E A+ +F++ML  G+
Sbjct: 169 STALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGV 228

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
           +P +VT +  L AC+  G  ERG +    +    K+         +I +  +   +D A 
Sbjct: 229 QPTNVTVMGALHACADLGDLERG-KFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAA 287

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNG--NLELGKFAAEKLYGMEPEKLSNYVVL 541
            + +    KT  + W A++     NG  N  L  F   +   ++P+  +   V+
Sbjct: 288 DIFKNLRNKTLVS-WNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVI 340



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 144/304 (47%), Gaps = 46/304 (15%)

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           ++ GYA     + AL  +  M+   V+   + F+ ++++C   + L+  K+ H  ++  G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
           F  ++ A + +V+ Y+K  +I DA ++FD+M  ++++ WN +I+GY  +G  + A+ L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 423 QMLLNGMRPNHVTFLAVLSACS-----RSGLSERGWEI---FQSM--------------- 459
           +M   G RP+ +T +++L A +     R G++  G+ +   F+S+               
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 460 ----------SRDHKIKPRAMHYACMIELLGREGLLDEA---FALIRGAPFKTTKNMWAA 506
                       DH+     + +  MI+   + G  + A   F  +     + T      
Sbjct: 181 SVSIARVIFDGMDHRT---VVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMG 237

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN----IYNSSGKLKEAAEVIRTLR 562
            L AC   G+LE GKF   KL  ++  KL + V ++N    +Y+   ++  AA++ + LR
Sbjct: 238 ALHACADLGDLERGKF-VHKL--VDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLR 294

Query: 563 RKGL 566
            K L
Sbjct: 295 NKTL 298


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/617 (38%), Positives = 356/617 (57%), Gaps = 5/617 (0%)

Query: 91  KKPSAGICSQ---IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
           K P + + S    I   VLN     A+EL   ++   G         +++ AC G  +  
Sbjct: 262 KMPDSDVVSWNALISGCVLNGHDHRAIELLLQMK-SSGLVPNVFMLSSILKACAGAGAFD 320

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
             +++  +M+    + D Y+   ++ M+ +   + DA ++FD M  R+L+  N +I+G  
Sbjct: 321 LGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCS 380

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
             G + EAF +F  L +E       T A +++++A LE  S  +Q+H+ A K+GF  +  
Sbjct: 381 HGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAH 440

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
           V   LID Y KC  + DA  VF+E S    +   ++I   +   + E A+ L+ EM   G
Sbjct: 441 VVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKG 500

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           ++ D F  S ++  C  L++ E  KQ HA L++  F  D  A +ALV  Y+K G IEDA 
Sbjct: 501 LEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAE 560

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
             F  +  + V+SW+A+I G   HG G+ A+ELF +M+  G+ PNH+T  +VL AC+ +G
Sbjct: 561 LAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAG 620

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
           L +     F SM     I     HY+CMI+LLGR G LD+A  L+   PF+   ++W AL
Sbjct: 621 LVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGAL 680

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           L A RV+ + ELGK AAEKL+ +EPEK   +V+L N Y SSG   E A+V + ++   ++
Sbjct: 681 LGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIK 740

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ 627
             PA SW+EVK + H F+ GD+SH  TKEIY K+D +   +SK GY+P     L D+D  
Sbjct: 741 KEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRS 800

Query: 628 EQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
           E+  +LS+HSE+LAVAF L++T    P+++ ++ RIC DCH A K I+ +  REI++RD 
Sbjct: 801 EKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDI 860

Query: 687 SRFHHFKDGMCSCGDYW 703
           +RFHHF+DG CSCGDYW
Sbjct: 861 NRFHHFRDGTCSCGDYW 877



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/408 (30%), Positives = 208/408 (50%), Gaps = 13/408 (3%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           +L +GF   L  RN ++  + +C     ARR+FDE+P+   VS + ++    ++G    A
Sbjct: 30  LLKSGFLASL--RNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSA 87

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
              F  +  E   C       +++     +L   G Q+H+ A+  GFG +VFV+ AL+ M
Sbjct: 88  IQAFHGMRAEGVCCNEFALPVVLKCVPDAQL---GAQVHAMAMATGFGSDVFVANALVAM 144

Query: 276 YSKCGSIEDAQGVFDEM-SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           Y   G ++DA+ VFDE  SE+  V WN +++ Y  +    +A+ ++ EM  SG++   F 
Sbjct: 145 YGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFG 204

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           FS ++  CT   +++  +Q HA +VR G+  D+   +ALVD Y K GR++ A  +F+KM 
Sbjct: 205 FSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP 264

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
             +V+SWNALI+G   +G    A+EL  QM  +G+ PN     ++L AC+ +G  + G +
Sbjct: 265 DSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQ 324

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
           I   M + +      +    ++++  +   LD+A  +      +    +W AL++ C   
Sbjct: 325 IHGFMIKANADSDDYIGVG-LVDMYAKNHFLDDAMKVFDWMSHRDLI-LWNALISGCSHG 382

Query: 515 GNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTL 561
           G  +    A    YG+  E L  N   L  +  S+  L EAA   R +
Sbjct: 383 GRHDE---AFSIFYGLRKEGLGVNRTTLAAVLKSTASL-EAASATRQV 426



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 163/295 (55%), Gaps = 1/295 (0%)

Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM-PERNLVSCNMIIAGMIDS 209
           +V +  ++TGF  D+++ N ++ M+   G M DARR+FDE   ERN VS N +++  + +
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKN 180

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
               +A  +F ++           F+ ++ A  G   I  G+Q+H+  ++MG+  +VF +
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTA 240

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            AL+DMY K G ++ A  +F++M +   V WN +I+G  L+G+   A++L  +M+ SG+ 
Sbjct: 241 NALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLV 300

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            + F  S I++ C    + +  +Q H  +++     D      LVD Y+K   ++DA  V
Sbjct: 301 PNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKV 360

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           FD M  +++I WNALI+G  + GR +EA  +F  +   G+  N  T  AVL + +
Sbjct: 361 FDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTA 415



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 233/466 (50%), Gaps = 18/466 (3%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N +  +A+++F  + + G        +  +++AC G R+I   ++V + ++  G+E D
Sbjct: 178 VKNDQCGDAIQVFGEMVWSG-IQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKD 236

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           ++  N ++ M+V+ G +  A  +F++MP+ ++VS N +I+G + +G    A  L L +  
Sbjct: 237 VFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKS 296

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                     +++++A AG     +G+Q+H   +K     + ++   L+DMY+K   ++D
Sbjct: 297 SGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A  VFD MS +  + WN +I+G +  G  +EA  ++Y +R  G+ ++  T + +++    
Sbjct: 357 AMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTAS 416

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           L +    +Q HA   + GF  D    + L+D Y K   + DA  VF++    ++I+  ++
Sbjct: 417 LEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSM 476

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I        GE A++LF +ML  G+ P+     ++L+AC+     E+G ++       H 
Sbjct: 477 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHA-----HL 531

Query: 465 IKPRAMHYA----CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
           IK + M  A     ++    + G +++A       P +   + W+A++     +G+   G
Sbjct: 532 IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVS-WSAMIGGLAQHGH---G 587

Query: 521 KFAAEKLYGMEPEKLS-NYVVLLNIY---NSSGKLKEAAEVIRTLR 562
           K A E    M  E ++ N++ + ++    N +G + EA     +++
Sbjct: 588 KRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMK 633


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/572 (38%), Positives = 350/572 (61%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T  +++ A   LR I   K +  Y + +GF+  + +   ++ M+ +CG +  AR+LFD M
Sbjct: 238 TIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGM 297

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            ERN+VS N +I   + + +  EA L+F  + +E       +    + A A L  +  G+
Sbjct: 298 LERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            +H  ++++G   NV V  +LI MY KC  ++ A  +F ++  +T V WN +I G+A +G
Sbjct: 358 FIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNG 417

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
              +AL+ + +MR   VK D FT+  +I     L+   HAK  H  ++R     ++   +
Sbjct: 418 RPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTT 477

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           ALVD Y+K G I  AR +FD M  ++V +WNA+I GYG HG G+ A+ELFE+M    ++P
Sbjct: 478 ALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKP 537

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           N VTFL+V+SACS SGL E G + F  M  ++ I+    HY  M++LLGR G L+EA+  
Sbjct: 538 NGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDF 597

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           I   P K   N++ A+L AC+++ N+   + AAE+L+ + P+    +V+L NIY ++   
Sbjct: 598 IMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMW 657

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
           ++  +V  ++ R+GLR  P CS +E+K + H F SG  +H  +K+IY  +++++  I + 
Sbjct: 658 EKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEA 717

Query: 612 GYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           GYVP+   +L   ++ ++++LS HSEKLA++FGL+NT+  T + + ++ R+C DCHNA K
Sbjct: 718 GYVPDTNLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATK 777

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            I++VTGREIVVRD  RFHHFK+G CSCGDYW
Sbjct: 778 YISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 167/308 (54%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           S++E++++   +   G   + + + +++ +  R G + +A R+F+ +  +  V  + ++ 
Sbjct: 49  SLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLK 108

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
           G     D  +A   F+ +  +  +     F  +++       + VGK++H   +K GF  
Sbjct: 109 GFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSL 168

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           ++F    L +MY+KC  + +A+ VFD M E+  V WNTI+AGY+ +G +  AL++   M 
Sbjct: 169 DLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMC 228

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           +  +K    T   ++   + L  +   K+ H   +R GF   +  ++ALVD Y+K G +E
Sbjct: 229 EENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLE 288

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            AR +FD ML +NV+SWN++I  Y  +   +EA+ +F++ML  G++P  V+ +  L AC+
Sbjct: 289 TARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACA 348

Query: 445 RSGLSERG 452
             G  ERG
Sbjct: 349 DLGDLERG 356



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 145/288 (50%), Gaps = 4/288 (1%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           +Q+     K G     F    L+ ++ + GS+++A  VF+ +  K  V ++T++ G+A  
Sbjct: 54  RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKV 113

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
              ++AL  +  MR   V+   + F+ ++++C   A L   K+ H  LV+ GF LD+ A 
Sbjct: 114 SDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAM 173

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           + L + Y+K  ++ +AR VFD+M  ++++SWN ++AGY  +G    A+E+ + M    ++
Sbjct: 174 TGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLK 233

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           P+ +T ++VL A S   L   G EI     R             ++++  + G L+ A  
Sbjct: 234 PSFITIVSVLPAVSALRLISVGKEIHGYAMRS-GFDSLVNISTALVDMYAKCGSLETARQ 292

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY--GMEPEKLS 536
           L  G   +   + W +++ A   N N +      +K+   G++P  +S
Sbjct: 293 LFDGMLERNVVS-WNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVS 339


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/617 (38%), Positives = 356/617 (57%), Gaps = 5/617 (0%)

Query: 91  KKPSAGICSQ---IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
           K P + + S    I   VLN     A+EL   ++   G         +++ AC G  +  
Sbjct: 169 KMPDSDVVSWNALISGCVLNGHDHRAIELLLQMK-SSGLVPNVFMLSSILKACAGAGAFD 227

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
             +++  +M+    + D Y+   ++ M+ +   + DA ++FD M  R+L+  N +I+G  
Sbjct: 228 LGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCS 287

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
             G + EAF +F  L +E       T A +++++A LE  S  +Q+H+ A K+GF  +  
Sbjct: 288 HGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAH 347

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
           V   LID Y KC  + DA  VF+E S    +   ++I   +   + E A+ L+ EM   G
Sbjct: 348 VVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKG 407

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           ++ D F  S ++  C  L++ E  KQ HA L++  F  D  A +ALV  Y+K G IEDA 
Sbjct: 408 LEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAE 467

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
             F  +  + V+SW+A+I G   HG G+ A+ELF +M+  G+ PNH+T  +VL AC+ +G
Sbjct: 468 LAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAG 527

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
           L +     F SM     I     HY+CMI+LLGR G LD+A  L+   PF+   ++W AL
Sbjct: 528 LVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGAL 587

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           L A RV+ + ELGK AAEKL+ +EPEK   +V+L N Y SSG   E A+V + ++   ++
Sbjct: 588 LGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIK 647

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ 627
             PA SW+EVK + H F+ GD+SH  TKEIY K+D +   +SK GY+P     L D+D  
Sbjct: 648 KEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRS 707

Query: 628 EQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
           E+  +LS+HSE+LAVAF L++T    P+++ ++ RIC DCH A K I+ +  REI++RD 
Sbjct: 708 EKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDI 767

Query: 687 SRFHHFKDGMCSCGDYW 703
           +RFHHF+DG CSCGDYW
Sbjct: 768 NRFHHFRDGTCSCGDYW 784



 Score =  167 bits (424), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 163/295 (55%), Gaps = 1/295 (0%)

Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM-PERNLVSCNMIIAGMIDS 209
           +V +  ++TGF  D+++ N ++ M+   G M DARR+FDE   ERN VS N +++  + +
Sbjct: 28  QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKN 87

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
               +A  +F ++           F+ ++ A  G   I  G+Q+H+  ++MG+  +VF +
Sbjct: 88  DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTA 147

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            AL+DMY K G ++ A  +F++M +   V WN +I+G  L+G+   A++L  +M+ SG+ 
Sbjct: 148 NALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLV 207

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            + F  S I++ C    + +  +Q H  +++     D      LVD Y+K   ++DA  V
Sbjct: 208 PNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKV 267

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           FD M  +++I WNALI+G  + GR +EA  +F  +   G+  N  T  AVL + +
Sbjct: 268 FDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTA 322



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 114/466 (24%), Positives = 233/466 (50%), Gaps = 18/466 (3%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N +  +A+++F  + + G        +  +++AC G R+I   ++V + ++  G+E D
Sbjct: 85  VKNDQCGDAIQVFGEMVWSG-IQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKD 143

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           ++  N ++ M+V+ G +  A  +F++MP+ ++VS N +I+G + +G    A  L L +  
Sbjct: 144 VFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKS 203

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                     +++++A AG     +G+Q+H   +K     + ++   L+DMY+K   ++D
Sbjct: 204 SGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 263

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A  VFD MS +  + WN +I+G +  G  +EA  ++Y +R  G+ ++  T + +++    
Sbjct: 264 AMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTAS 323

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           L +    +Q HA   + GF  D    + L+D Y K   + DA  VF++    ++I+  ++
Sbjct: 324 LEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSM 383

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I        GE A++LF +ML  G+ P+     ++L+AC+     E+G ++       H 
Sbjct: 384 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHA-----HL 438

Query: 465 IKPRAMHYA----CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
           IK + M  A     ++    + G +++A       P +   + W+A++     +G+   G
Sbjct: 439 IKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVS-WSAMIGGLAQHGH---G 494

Query: 521 KFAAEKLYGMEPEKLS-NYVVLLNIY---NSSGKLKEAAEVIRTLR 562
           K A E    M  E ++ N++ + ++    N +G + EA     +++
Sbjct: 495 KRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMK 540



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 168/316 (53%), Gaps = 8/316 (2%)

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM-SEKTTVGWNTIIAGY 307
           +G Q+H+ A+  GFG +VFV+ AL+ MY   G ++DA+ VFDE  SE+  V WN +++ Y
Sbjct: 25  LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAY 84

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
             +    +A+ ++ EM  SG++   F FS ++  CT   +++  +Q HA +VR G+  D+
Sbjct: 85  VKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDV 144

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              +ALVD Y K GR++ A  +F+KM   +V+SWNALI+G   +G    A+EL  QM  +
Sbjct: 145 FTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSS 204

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G+ PN     ++L AC+ +G  + G +I   M + +      +    ++++  +   LD+
Sbjct: 205 GLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVG-LVDMYAKNHFLDD 263

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYN 546
           A  +      +    +W AL++ C   G  +    A    YG+  E L  N   L  +  
Sbjct: 264 AMKVFDWMSHRDLI-LWNALISGCSHGGRHDE---AFSIFYGLRKEGLGVNRTTLAAVLK 319

Query: 547 SSGKLKEAAEVIRTLR 562
           S+  L EAA   R + 
Sbjct: 320 STASL-EAASATRQVH 334


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/605 (37%), Positives = 358/605 (59%), Gaps = 32/605 (5%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           S +  L+ +CI   S+   K++ S ++++G   D ++ N +L ++ +CG +  A  LF  
Sbjct: 53  SLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGV 112

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE----------------EFSDCGSRTF 234
           MP +N++SCN++I G   SGD++ A  +F ++ E                EF++ G   F
Sbjct: 113 MPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLF 172

Query: 235 ATM---------------IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
           + M               +R  AGL  +  G+Q+H    K GF  N+ V  +L  MY KC
Sbjct: 173 SRMNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKC 232

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           GS+ + + +   M  +  V WNT+IAG A +GY EE LD Y  M+ +G + D  TF  +I
Sbjct: 233 GSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVI 292

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
             C+ LA+L   +Q HA +++ G  L +   S+L+  YS+ G +E +  VF +    +V+
Sbjct: 293 SSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVV 352

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
            W+++IA YG HGRG EA++LF QM    +  N VTFL++L ACS  GL E+G + F  M
Sbjct: 353 CWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLM 412

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
              + +KPR  HY CM++LLGR G ++EA ALIR  P K     W  LL+AC+++   E+
Sbjct: 413 VEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEM 472

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
            +  +E+++ ++P     YV+L NI+ S  +  + ++V + +R + L+  P  SW+EVK 
Sbjct: 473 ARRISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKN 532

Query: 580 QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEK 638
           Q H F  GD+SH ++ EI   +  +  E+ K GYVP+  ++L D+D E ++  L +HSEK
Sbjct: 533 QIHQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEK 592

Query: 639 LAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCS 698
           LA+AF L+ T   TP++++++ R+C DCH AIK I+ ++ REI+VRD+SRFHHFK+G CS
Sbjct: 593 LAIAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCS 652

Query: 699 CGDYW 703
           CGDYW
Sbjct: 653 CGDYW 657



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/365 (27%), Positives = 179/365 (49%), Gaps = 21/365 (5%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E L LF  +  E GF        +++  C GLR++   ++V  Y+   GFE +L + + +
Sbjct: 167 EGLGLFSRMN-ELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSL 225

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
             M+++CG + +  RL   MP +N+V+ N +IAG   +G Y E     LD +      G 
Sbjct: 226 AHMYMKCGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNG-YPEE---VLDQYNMMKMAGF 281

Query: 232 R----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
           R    TF ++I + + L  +  G+Q+H+  +K G    V V  +LI MYS+CG +E +  
Sbjct: 282 RPDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLK 341

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           VF E      V W+++IA Y  HG   EA+DL+ +M    ++ +  TF  ++  C+    
Sbjct: 342 VFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGL 401

Query: 348 LEHAKQAHAGLV-RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALI 405
            E   +    +V ++G    +   + +VD   ++G +E+A  +   M  K +VI+W  L+
Sbjct: 402 KEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLL 461

Query: 406 AGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS---R 461
           +    H + E A  + E++  L+   P     L+ + A      S++ W+    +    R
Sbjct: 462 SACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHA------SDKRWDDVSDVRKAMR 515

Query: 462 DHKIK 466
           D K+K
Sbjct: 516 DRKLK 520


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/597 (39%), Positives = 361/597 (60%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N   R A+E+   ++ E G    S T  +++ AC   R++   +   ++ + +G E  + 
Sbjct: 138 NGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVN 197

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   +L  + +CG +  AR +FD MP +N VS N +I G   +GD  EA  LF  + EE 
Sbjct: 198 VATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEG 257

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            D    +    ++A   L  +  G ++H   +++G   NV V  ALI MYSKC  ++ A 
Sbjct: 258 VDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLAS 317

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VFDE+  +T V WN +I G A +G SE+A+ L+  M+   VK D FT   +I     ++
Sbjct: 318 HVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADIS 377

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
               A+  H   +R     D+   +AL+D Y+K GR+  AR +F+    ++VI+WNA+I 
Sbjct: 378 DPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIH 437

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GYG+HG G+ AVELFE+M   G+ PN  TFL+VLSACS +GL + G E F SM  D+ ++
Sbjct: 438 GYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLE 497

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P   HY  M++LLGR G LDEA+A I+  P     +++ A+L AC+++ N+EL + +A+K
Sbjct: 498 PGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQK 557

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           ++ + P++   +V+L NIY ++   K+ A V   + + GL+  P  S I++K + H F S
Sbjct: 558 IFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYS 617

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLI 646
           G  +H Q KEIY ++ +++ EI   GYVP+  ++    D+ + ++L+ HSEKLA+AFGLI
Sbjct: 618 GSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAFGLI 677

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            T+  T +QI ++ R+C DCHNA KLI++VTGREI++RD  RFHHFKDG CSCGDYW
Sbjct: 678 RTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 1/231 (0%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           RTF ++++  A    ++ G+ +H+     G       + AL +MY+KC    DA+ VFD 
Sbjct: 60  RTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDR 119

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR-DSGVKMDHFTFSMIIRICTRLASLEH 350
           M  +  V WN ++AGYA +G +  A+++   M+ + G + D  T   ++  C    +L  
Sbjct: 120 MPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAA 179

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            ++AHA  +R G    +   +A++D Y K G I  AR VFD M  KN +SWNA+I GY  
Sbjct: 180 CREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           +G   EA+ LF +M+  G+    V+ LA L AC   G  + G  + + + R
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVR 290



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 1/126 (0%)

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           AL  +  M  +G      TF+ ++++C     L   +  HA L   G   + +A +AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML-LNGMRPNHV 434
            Y+K  R  DAR VFD+M  ++ ++WNAL+AGY  +G    A+E+  +M    G RP+ +
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 435 TFLAVL 440
           T ++VL
Sbjct: 163 TLVSVL 168


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/594 (38%), Positives = 353/594 (59%), Gaps = 5/594 (0%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           REA++L E    + G   G+   + LI  C G +++ E +R+  +M S   +   ++ N 
Sbjct: 26  REAVDLLE----QSGAAGGTGDLEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNL 81

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ M+ +CG +++A+R+FD M  +N+ S  M++AG + SG  +EA  LF  + +E     
Sbjct: 82  LVDMYGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPD 141

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
                  I +    + +S G+++HS A   G   ++  + A+I+MY KCGSI +A  VF 
Sbjct: 142 RVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFT 201

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            M EK  + W+T+IA +  +  ++EAL  +  M+  G+++D  T+  ++   T + +LE 
Sbjct: 202 RMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTSVGALEL 261

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            K  H  +V  G    IV  + LV+ Y K G  +DAR VFD M+ KNV+SWNA++A YG 
Sbjct: 262 GKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQ 321

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           +GR  EA+ LF+ M L G+RPN +TF+ +L  CS SG  +     F  M +D  I PR +
Sbjct: 322 NGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPREV 381

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           H+ C+I++LGR G L+EA  LI+  P      +W +LL AC  + + +    AAE+ +  
Sbjct: 382 HFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTHKDEDRAARAAEEAFQR 441

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           EP   + Y++L N+Y +  K  EAA+V + + + G+R     SWIE+ KQ H F++GD  
Sbjct: 442 EPRCAAAYIMLSNLYAALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHEFVAGDSI 501

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTS 649
           H     I++ + R+M E+   GY P+ K ++  ++E+E+  VL YHSEKLAVAFG+ +T 
Sbjct: 502 HPDKSRIFKTLQRLMSEMRIKGYEPDRKVVIHSMEEEEKDEVLFYHSEKLAVAFGIASTP 561

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             TPL IV++ R+C DCH+AIK I+ V GR I VRD++RFHHF  G CSCGDYW
Sbjct: 562 PRTPLCIVKNLRVCSDCHSAIKFISGVEGRRITVRDSNRFHHFDRGECSCGDYW 615


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/637 (37%), Positives = 375/637 (58%), Gaps = 41/637 (6%)

Query: 107 NKRYREALELF-------EILEFEGGFDVGSST-YDALISACIGLRSIREVKRVFSYMLS 158
           ++R+ E +ELF       E +++       S   Y  LI+AC+  R +   KRV ++  +
Sbjct: 32  HRRFEEIIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKA 91

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDA-------------------------------RRL 187
           + F P + + NR++ M+ +CG ++DA                               R+L
Sbjct: 92  SNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKL 151

Query: 188 FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE-EFSDCGSRTFATMIRASAGLEL 246
           FDEMP R+  S N +I+G +  G Y+EA  LF  + E E S+C   T ++ + A+A +  
Sbjct: 152 FDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISS 211

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           +  GK++H   ++ G   +  V  AL+D+Y KCGS+ +A+G+FD+M++K  V W T+I  
Sbjct: 212 LRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHR 271

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
               G  +E   L+ ++  SGV+ + +TF+ ++  C  LA+ +  K+ H  + R G+   
Sbjct: 272 CFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPF 331

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
             A SALV  YSK G  E AR VF++M   +++SW +LI GY  +G+ + A++ FE +L 
Sbjct: 332 SFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLR 391

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
           +G +P+ +TF+ VLSAC+ +GL + G E F S+   H +   A HYAC+I+LL R G   
Sbjct: 392 SGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVIDLLARSGRFK 451

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546
           EA  +I   P K  K +WA+LL  CR++GN+EL + AA+ L+ +EPE  + Y+ L NIY 
Sbjct: 452 EAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPENPATYITLSNIYA 511

Query: 547 SSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMML 606
           ++G   E  +V   +  +G+   P  SWIE+K+Q HVFL GD SH +  +I+  +  +  
Sbjct: 512 NAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSHPKISDIHEYLGELSK 571

Query: 607 EISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCD 665
           ++ + GYV +   +L DV +EQ+++ + YHSEKLAVAFG+I+TS  TP+++ ++ R C D
Sbjct: 572 KMKEEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSPGTPIKVFKNLRTCVD 631

Query: 666 CHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           CHNA+K I+ +  R+I+VRD++RFH F DG CSC DY
Sbjct: 632 CHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 13/171 (7%)

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF---------TFSMIIRICTRLASLEHA 351
           +T ++ ++ H   EE ++L+ +       +D+           +S +I  C R   LE  
Sbjct: 23  DTTLSHHSEHRRFEEIIELFCQQNRLKEAVDYLHRIPQPSPRLYSTLIAACLRHRKLELG 82

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K+ HA      F   IV ++ L+  Y+K G + DA+ +FD++  K++ SWN +I+GY N 
Sbjct: 83  KRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANV 142

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           GR E+A +LF++M       ++ ++ AV+S     G      ++F+ M  +
Sbjct: 143 GRIEQARKLFDEM----PHRDNFSWNAVISGYVSQGWYMEALDLFRMMQEN 189


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/594 (38%), Positives = 359/594 (60%), Gaps = 3/594 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL+LF  +     F     T+ A++   +G   +   +++    + T +  D+++ N +
Sbjct: 227 EALKLFMQMR-NMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANAL 285

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L  + +   +  A+ LFDEMPE + VS N+II G   +G Y ++F LF  L     D  +
Sbjct: 286 LDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKN 345

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
             FATM+  +A    +S+G+Q H+ A+       V V  AL+DMY+KC   EDA  +F  
Sbjct: 346 FPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFAN 405

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           ++ + +V W  II+ Y   G+ EEAL ++ EM    V  D  TF+  ++    LAS+   
Sbjct: 406 LAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLG 465

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           KQ H+ ++R G    + + S LVD Y+  G ++DA  VF +M  +N++ WNALI+ Y  +
Sbjct: 466 KQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQN 525

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G  E     F  M+ +G+ P+ V+FL+VL+ACS  GL E+    F SM++ +K+ PR  H
Sbjct: 526 GDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKH 585

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           YA MI++L R G  +EA  LI   PF+  + MW+++L +CR++ N +L K AA++L+ M+
Sbjct: 586 YATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMD 645

Query: 532 P-EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
                + YV + NIY  +GK + AA+V + +R +G++ + A SW+E+  + HVF + D++
Sbjct: 646 ALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRT 705

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTS 649
           H QT++I RK++ ++  + K GY P+    L +VDE+ +   L YHSE+LA+AF LINT 
Sbjct: 706 HPQTEQIRRKINSLVELMDKEGYKPDTSCTLQNVDEEMKIESLKYHSERLAIAFALINTP 765

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + +P+ I+++ R C DCH AIK+I+ + GREI VRD+SRFHHF+DG CSCGDYW
Sbjct: 766 EGSPIIIMKNLRACVDCHAAIKVISKIVGREITVRDSSRFHHFRDGSCSCGDYW 819



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 160/320 (50%), Gaps = 31/320 (9%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           ++ TGF+P++   N  L   VR   +  AR+LFDEMP RN  S NM+++G + S +   A
Sbjct: 37  IVKTGFDPEISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRA 96

Query: 216 FLLF---------------------------LDLWEEFSDCGSR----TFATMIRASAGL 244
             LF                            +L+ E    G +    TFAT++      
Sbjct: 97  RELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDT 156

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             +    Q+HS  ++ GF  ++ V  +L+D Y K   ++ A  +F EM  K +V +N +I
Sbjct: 157 TTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMI 216

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
            GY  +G+ EEAL L+ +MR+   +   FTF+ ++ +      +   +Q H   ++  + 
Sbjct: 217 TGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYV 276

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            DI   +AL+DFYSK   I+ A+++FD+M   + +S+N +I GY  +G+ E++ +LF+++
Sbjct: 277 WDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRL 336

Query: 425 LLNGMRPNHVTFLAVLSACS 444
                   +  F  +LS  +
Sbjct: 337 QGTSFDRKNFPFATMLSVAA 356


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/597 (39%), Positives = 361/597 (60%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N   R A+E+   ++ E G    S T  +++ AC   R++   +   ++ + +G E  + 
Sbjct: 138 NGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVN 197

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   +L  + +CG +  AR +FD MP +N VS N +I G   +GD  EA  LF  + EE 
Sbjct: 198 VATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEG 257

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            D    +    ++A   L  +  G ++H   +++G   NV V  ALI MYSKC  ++ A 
Sbjct: 258 VDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLAS 317

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VFDE+  +T V WN +I G A +G SE+A+ L+  M+   VK D FT   +I     ++
Sbjct: 318 HVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADIS 377

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
               A+  H   +R     D+   +AL+D Y+K GR+  AR +F+    ++VI+WNA+I 
Sbjct: 378 DPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIH 437

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GYG+HG G+ AVELFE+M   G+ PN  TFL+VLSACS +GL + G E F SM  D+ ++
Sbjct: 438 GYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLE 497

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P   HY  M++LLGR G LDEA+A I+  P     +++ A+L AC+++ N+EL + +A+K
Sbjct: 498 PGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQK 557

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           ++ + P++   +V+L NIY ++   K+ A V   + + GL+  P  S I++K + H F S
Sbjct: 558 IFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYS 617

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLI 646
           G  +H Q KEIY ++ +++ EI   GYVP+  ++    D+ + ++L+ HSEKLA+AFGLI
Sbjct: 618 GSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAFGLI 677

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            T+  T +QI ++ R+C DCHNA KLI++VTGREI++RD  RFHHFKDG CSCGDYW
Sbjct: 678 RTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 1/231 (0%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           RTF ++++  A    ++ G+ +H+     G       + AL +MY+KC    DA+ VFD 
Sbjct: 60  RTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDR 119

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR-DSGVKMDHFTFSMIIRICTRLASLEH 350
           M  +  V WN ++AGYA +G +  A+++   M+ + G + D  T   ++  C    +L  
Sbjct: 120 MPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAA 179

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            ++AHA  +R G    +   +A++D Y K G I  AR VFD M  KN +SWNA+I GY  
Sbjct: 180 CREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQ 239

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           +G   EA+ LF +M+  G+    V+ LA L AC   G  + G  + + + R
Sbjct: 240 NGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVR 290



 Score = 79.7 bits (195), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 69/126 (54%), Gaps = 1/126 (0%)

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           AL  +  M  +G      TF+ ++++C     L   +  HA L   G   + +A +AL +
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML-LNGMRPNHV 434
            Y+K  R  DAR VFD+M  ++ ++WNAL+AGY  +G    A+E+  +M    G RP+ +
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 435 TFLAVL 440
           T ++VL
Sbjct: 163 TLVSVL 168


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/541 (40%), Positives = 336/541 (62%), Gaps = 1/541 (0%)

Query: 164  DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
            ++++ N +L  + +C  + D RRLFDEMPER+ VS N+IIA    +        LF ++ 
Sbjct: 468  NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 527

Query: 224  EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
            +   D     +ATM+  +  L  + +GKQ+H+  + +G      +  ALIDMYSKCG ++
Sbjct: 528  KLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLD 587

Query: 284  DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
             A+  F   SEK+ + W  +I GY  +G  EEAL L+ +MR +G++ D  TFS II+  +
Sbjct: 588  AAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASS 647

Query: 344  RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
             LA +   +Q H+ L+R G+   + + S LVD Y+K G +++A   FD+M  +N ISWNA
Sbjct: 648  SLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNA 707

Query: 404  LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
            +I+ Y ++G  + A+++FE ML  G  P+ VTFL+VL+ACS +GL++   + F  M   +
Sbjct: 708  VISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQY 767

Query: 464  KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
             I P   HYAC+I+ LGR G   +   ++   PFK    +W ++L +CR++GN EL + A
Sbjct: 768  SISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVA 827

Query: 524  AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
            A+KL+GMEP   + YV+L NIY  +G+ ++AA V + +R +G+R     SW+E+K++ + 
Sbjct: 828  ADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYS 887

Query: 584  FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVA 642
            F S D +     EI  ++DR+  E+ K GY P+    L  VD E +   L YHSE+LA+A
Sbjct: 888  FASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIA 947

Query: 643  FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
            F L+NT   TP++I+++   C DCH  IK+I+ +  R+I+VRD+ RFHHFKDG+CSCGDY
Sbjct: 948  FALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDY 1007

Query: 703  W 703
            W
Sbjct: 1008 W 1008



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 175/406 (43%), Gaps = 46/406 (11%)

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           TGF+   Y  N  L   +  G +  AR +FD+MP +N+ S N+I++    SGD   A  L
Sbjct: 251 TGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHL 310

Query: 219 FLDLWEEFSDCGS---RTFATMIRASAGLEL-------------ISVG----------KQ 252
           FL      +   +   R  A   R S  L L             ++V             
Sbjct: 311 FLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPS 370

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LH  A+K G   +VFV   L+D Y K G +  A+ VF EM +K  V +N ++ G +  G 
Sbjct: 371 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 430

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
             +AL L+  MR +G            R    L    H++       R    L++  N++
Sbjct: 431 HTQALQLFAAMRRAGYS----------RHPLHLLQYSHSRS------RSTSVLNVFVNNS 474

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+DFYSK   ++D R +FD+M  ++ +S+N +IA Y  +      + LF +M   G    
Sbjct: 475 LLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQ 534

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            + +  +LS          G +I   +     +    +    +I++  + G+LD A +  
Sbjct: 535 VLPYATMLSVAGSLPDVHIGKQIHAQLVL-LGLASEDLLGNALIDMYSKCGMLDAAKSNF 593

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLS 536
                K+  + W AL+T    NG  E  L  F+  +  G+ P++ +
Sbjct: 594 SNRSEKSAIS-WTALITGYVQNGQHEEALQLFSDMRRAGLRPDRAT 638


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/582 (38%), Positives = 354/582 (60%), Gaps = 1/582 (0%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           EGG    S T  +++ AC   R++   + V ++ L  G +  + +   VL  + +CG + 
Sbjct: 112 EGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVE 171

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
            AR +FD MP RN VS N +I G  D+G+  EA  LF  + +E  D    +    ++A  
Sbjct: 172 AARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACG 231

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM-SEKTTVGWN 301
            L  +   +++H   +++G   NV V+ ALI  Y+KC   + A  VF+E+ ++KT + WN
Sbjct: 232 ELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWN 291

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
            +I G+  +   E+A  L+  M+   V+ D FT   +I     ++    A+  H   +RH
Sbjct: 292 AMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRH 351

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
               D+   +AL+D YSK GR+  AR +FD    ++VI+WNA+I GYG+HG G+ AVELF
Sbjct: 352 QLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELF 411

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
           E+M   G  PN  TFL+VL+ACS +GL + G + F SM +D+ ++P   HY  M++LLGR
Sbjct: 412 EEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGR 471

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
            G LDEA++ I+  P +   +++ A+L AC+++ N+EL + +A+ ++ + PE+   +V+L
Sbjct: 472 AGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLL 531

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV 601
            NIY ++   K+ A V   + +KGL+  P  S I++K + H F SG  +H   K+IY ++
Sbjct: 532 ANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARL 591

Query: 602 DRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHR 661
            +++ EI   GYVP+  ++    D+ + ++L+ HSEKLA+A+GLI T+  T +QI ++ R
Sbjct: 592 AKLIEEIKDMGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLR 651

Query: 662 ICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +C DCHNA KLI+++TGREI++RD  RFHHFKDG CSCGDYW
Sbjct: 652 VCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDYW 693



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 113/218 (51%), Gaps = 2/218 (0%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           RTF  +++  A    ++ G+ +H+     G       S AL +MY KC    DA+ VFD 
Sbjct: 17  RTFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDR 76

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR--DSGVKMDHFTFSMIIRICTRLASLE 349
           M  +  V WN ++AGYA +G    A++    M+  + G + D  T   ++  C    +L 
Sbjct: 77  MPSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALH 136

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             ++ HA  +R G    +  ++A++D Y K G +E AR VFD M  +N +SWNA+I GY 
Sbjct: 137 ACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYA 196

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
           ++G   EA+ LF +M+  G+     + LA L AC   G
Sbjct: 197 DNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELG 234


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/571 (38%), Positives = 350/571 (61%), Gaps = 8/571 (1%)

Query: 139 ACIGL----RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +CI L    R++  +++V +++++ G   DL + N++L  + +   + DA  LFD +  R
Sbjct: 5   SCIDLLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMR 64

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           +  + ++++ G   +GD+   +  F +L        + T   +IR       + +G+ +H
Sbjct: 65  DSKTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIH 124

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA-LHGYS 313
              LK G   + FV  +L+DMY+KC  +EDAQ +F+ M  K  V W  +I  YA  + Y 
Sbjct: 125 DVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAY- 183

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
            E+L L+  MR+ GV  D      ++  C +L ++  A+ A+  +VR+GF LD++  +A+
Sbjct: 184 -ESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAM 242

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           +D Y+K G +E AR VFD+M  KNVISW+A+IA YG HGRG++A++LF  ML   + PN 
Sbjct: 243 IDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNR 302

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
           VTF+++L ACS +GL E G   F SM  +H ++P   HY CM++LLGR G LDEA  LI 
Sbjct: 303 VTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIE 362

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
               +  + +W+ALL ACR++  +EL + AA  L  ++P+   +YV+L NIY  +GK ++
Sbjct: 363 AMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEK 422

Query: 554 AAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGY 613
            A+    + ++ L+ +P  +WIEV  + + F  GD+SH Q+KEIY  +  ++ ++   GY
Sbjct: 423 VAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGY 482

Query: 614 VPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKL 672
           VP+   +L DV+E+ +Q +L  HSEKLA+AFGLI   +  P++I ++ R+C DCH   K+
Sbjct: 483 VPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKM 542

Query: 673 IAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++ +  R I+VRDA+RFHHF DG CSCGDYW
Sbjct: 543 VSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 167/345 (48%), Gaps = 7/345 (2%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G    + T   +I  C     ++  + +   +L  G   D ++   ++ M+ +C ++ DA
Sbjct: 96  GVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDA 155

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           +RLF+ M  ++LV+  ++I    D   Y E+ +LF  + EE          T++ A A L
Sbjct: 156 QRLFERMLSKDLVTWTVMIGAYADCNAY-ESLVLFDRMREEGVVPDKVAMVTVVNACAKL 214

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             +   +  +   ++ GF  +V +  A+IDMY+KCGS+E A+ VFD M EK  + W+ +I
Sbjct: 215 GAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMI 274

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL-VRHGF 363
           A Y  HG  ++A+DL++ M    +  +  TF  ++  C+    +E   +    +   H  
Sbjct: 275 AAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAV 334

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLC-KNVISWNALIAGYGNHGRGEEAVELFE 422
             D+   + +VD   + GR+++A  + + M   K+   W+AL+     H + E A +   
Sbjct: 335 RPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAAN 394

Query: 423 QML-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
            +L L    P H   L+ + A  ++G  E+  + F+ M    K+K
Sbjct: 395 SLLELQPQNPGHYVLLSNIYA--KAGKWEKVAK-FRDMMTQRKLK 436


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/606 (37%), Positives = 360/606 (59%), Gaps = 12/606 (1%)

Query: 100 QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           Q++   L       + L  +L  +G    G+S +   I AC+      + K     +L T
Sbjct: 218 QMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGT 277

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
                      +L M+ +CG ++ ARR+FD MP RN V+ + +I G +      +AFLLF
Sbjct: 278 A----------LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLF 327

Query: 220 LD-LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
              L +        + A+ +RA A L+ + +G+QLH+   K G   ++    +L+ MY+K
Sbjct: 328 KAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK 387

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            G I+ A  +FDEM+ K TV ++ +++GY  +G +EEA  ++ +M+   V+ D  T   +
Sbjct: 388 AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSL 447

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           I  C+ LA+L+H + +H  ++  G   +    +AL+D Y+K GRI+ +R VF+ M  +++
Sbjct: 448 IPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDI 507

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SWN +IAGYG HG G+EA  LF +M   G  P+ VTF+ +LSACS SGL   G   F  
Sbjct: 508 VSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHV 567

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M   + + PR  HY CM++LL R G LDEA+  I+  P +    +W ALL ACRV  N++
Sbjct: 568 MGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNID 627

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           LGK  +  +  + PE   N+V+L NIY+++G+  EAAEV    + +G +  P CSWIE+ 
Sbjct: 628 LGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 687

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSE 637
              H F+ GDQSH Q+ EIYR++D +++ I K GY P+   +L D+ +E++++ L  HSE
Sbjct: 688 GSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSE 747

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+A+G+++ S+   + + ++ R+C DCH  IK I++V  R I+VRDA+RFHHFK+G C
Sbjct: 748 KLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQC 807

Query: 698 SCGDYW 703
           SCGD+W
Sbjct: 808 SCGDFW 813



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 137/531 (25%), Positives = 243/531 (45%), Gaps = 64/531 (12%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+   + AC  L      + +  + +  G + DL++   +L M+V+C  + DA  +F  M
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC--GSRTFATMIRASAGLELISV 249
           P R+LV+ N ++AG    G Y  A    L +  +       + T   ++   A    ++ 
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 250 GKQLHSCAL----------KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
           G  +H+  +          K    D V +  AL+DMY+KCGS+  A+ VFD M  +  V 
Sbjct: 247 GTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 306

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGV-KMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
           W+ +I G+ L     +A  L+  M   G+  +   + +  +R C  L  L   +Q HA L
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALL 366

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
            + G   D+ A ++L+  Y+K G I+ A  +FD+M  K+ +S++AL++GY  +GR EEA 
Sbjct: 367 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAF 426

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACS-----RSGLSERGWEIFQSMSRDHKIKPRA--MH 471
            +F++M    + P+  T ++++ ACS     + G    G  I + ++ +  I      M+
Sbjct: 427 LVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMY 486

Query: 472 YAC-----------------------MIELLGREGLLDEAFAL---IRGAPFKTTKNMWA 505
             C                       MI   G  GL  EA AL   +    F      + 
Sbjct: 487 AKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFI 546

Query: 506 ALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
            LL+AC  +G +  GK     +   YG+ P ++ +Y+ ++++ +  G L EA E I+++ 
Sbjct: 547 CLLSACSHSGLVIEGKHWFHVMGHGYGLTP-RMEHYICMVDLLSRGGFLDEAYEFIQSMP 605

Query: 563 -RKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
            R  +R+     W+ +     V+        +  ++ +KV RM+ E+   G
Sbjct: 606 LRADVRV-----WVALLGACRVY--------KNIDLGKKVSRMIQELGPEG 643



 Score =  125 bits (315), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 173/378 (45%), Gaps = 23/378 (6%)

Query: 175 HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA--FLLFLDLWEEFSDCGSR 232
           H+  G +  A  LFD++P  ++ + N +I     S     A    L+  +        + 
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           TF   ++A + L     G+ +H  A+  G   ++FVS AL+DMY KC  + DA  +F  M
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALD--LYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
             +  V WN ++AGYA HG    A+   L  +M+   ++ +  T   ++ +  +  +L  
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 351 AKQAHAGLVRHGFGLD----------IVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
               HA  +R     +          ++  +AL+D Y+K G +  AR VFD M  +N ++
Sbjct: 247 GTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 306

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNG---MRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           W+ALI G+    R  +A  LF+ ML  G   + P  +   + L AC+       G ++  
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQLHA 364

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
            +++   +         ++ +  + GL+D+A AL      K T + ++AL++    NG  
Sbjct: 365 LLAKS-GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS-YSALVSGYVQNGRA 422

Query: 518 ELGKFAAEKLYG--MEPE 533
           E      +K+    +EP+
Sbjct: 423 EEAFLVFKKMQACNVEPD 440


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/584 (37%), Positives = 346/584 (59%), Gaps = 2/584 (0%)

Query: 122  FEGGFDVGSSTYDALISACIGLRS-IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM 180
              GG      T  +++ AC  L        ++ +  +  G   D ++   ++ ++ + G 
Sbjct: 999  LRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGK 1058

Query: 181  MIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA 240
            M +A  LF      +L S N ++ G I SGD+ +A  L++ + E        T A   +A
Sbjct: 1059 MEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKA 1118

Query: 241  SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW 300
            + GL  +  GKQ+ +  +K GF  ++FV   ++DMY KCG +E A+ +F+E+     V W
Sbjct: 1119 AGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAW 1178

Query: 301  NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
             T+I+G   +G  E AL  Y+ MR S V+ D +TF+ +++ C+ L +LE  +Q HA  V+
Sbjct: 1179 TTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVK 1238

Query: 361  HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
                 D    ++LVD Y+K G IEDAR +F +     + SWNA+I G   HG  EEA++ 
Sbjct: 1239 LNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQF 1298

Query: 421  FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
            FE+M   G+ P+ VTF+ VLSACS SGL    +E F SM + + I+P   HY+C+++ L 
Sbjct: 1299 FEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALS 1358

Query: 481  REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540
            R G + EA  +I   PF+ + +M+  LL ACRV  + E GK  AEKL  +EP   + YV+
Sbjct: 1359 RAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVL 1418

Query: 541  LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRK 600
            L N+Y ++ + +  A     +R+  ++  P  SW+++K + H+F++GD+SH +T  IY K
Sbjct: 1419 LSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNK 1478

Query: 601  VDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQS 659
            V+ +M  I + GY+P+    L DV+E+++   L YHSEKLA+A+GL+ T   T L+++++
Sbjct: 1479 VEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKN 1538

Query: 660  HRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             R+C DCHNAIK I+ V  RE+V+RDA+RFHHF+ G+CSCGDYW
Sbjct: 1539 LRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 156/290 (53%), Gaps = 2/290 (0%)

Query: 105  VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
            +++  + +AL L+ IL  E G      T      A  GL  +++ K++ + ++  GF  D
Sbjct: 1085 IVSGDFPKALRLY-ILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLD 1143

Query: 165  LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
            L++ + VL M+++CG M  ARR+F+E+P  + V+   +I+G +++G    A   +  +  
Sbjct: 1144 LFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRL 1203

Query: 225  EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                    TFAT+++A + L  +  G+Q+H+  +K+    + FV  +L+DMY+KCG+IED
Sbjct: 1204 SKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIED 1263

Query: 285  AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
            A+G+F   +      WN +I G A HG +EEAL  + EM+  GV  D  TF  ++  C+ 
Sbjct: 1264 ARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSH 1323

Query: 345  LASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
               +  A +    + + +G   +I   S LVD  S+ GRI +A  V   M
Sbjct: 1324 SGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSM 1373



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 174/346 (50%), Gaps = 7/346 (2%)

Query: 195  NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
            ++++ N  ++  +  G+  EA   F+D+      C   TF  M+   AGL  + +GKQ+H
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 255  SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
               ++ G    V V   LI+MY K GS+  A+ VF +M+E   V WNT+I+G AL G  E
Sbjct: 930  GIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEE 989

Query: 315  EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH-AKQAHAGLVRHGFGLDIVANSAL 373
             ++ ++ ++   G+  D FT + ++R C+ L    H A Q HA  ++ G  LD   ++ L
Sbjct: 990  CSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTL 1049

Query: 374  VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
            +D YSK G++E+A  +F      ++ SWNA++ GY   G   +A+ L+  M  +G R N 
Sbjct: 1050 IDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQ 1109

Query: 434  VTFL-AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            +T   A  +A    GL ++G +I Q++             + ++++  + G ++ A  + 
Sbjct: 1110 ITLANAAKAAGGLVGL-KQGKQI-QAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIF 1167

Query: 493  RGAPFKTTKNMWAALLTACRVNGNLELGKFAAE--KLYGMEPEKLS 536
               P       W  +++ C  NG  E   F     +L  ++P++ +
Sbjct: 1168 NEIP-SPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYT 1212



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 111/472 (23%), Positives = 205/472 (43%), Gaps = 48/472 (10%)

Query: 109  RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
            + R+   LF +L           T   +   C+   S    + +  Y +  G + D+++ 
Sbjct: 707  KARDGFHLFRLLR-RSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVA 765

Query: 169  NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
              ++ ++ + G + +AR LFD M  R++V  N+++   +D+G   EA LLF     EF+ 
Sbjct: 766  GALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLF----SEFNR 821

Query: 229  CGSR----TFATMIRASAGLELISVGKQLHSCALKM--GFGDNVFVSCALIDMYSKCGSI 282
             G R    T  T+ R      ++   + +    LK    +G  +F       MY      
Sbjct: 822  TGLRPDDVTLCTLAR------VVKSKQNVLEWQLKQLKAYGTKLF-------MYDDDDDG 868

Query: 283  EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
             D             + WN  ++ +   G + EA+D + +M +S V  D  TF +++ + 
Sbjct: 869  SD------------VIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVV 916

Query: 343  TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
              L  LE  KQ H  +VR G    +   + L++ Y K G +  AR VF +M   +++SWN
Sbjct: 917  AGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWN 976

Query: 403  ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
             +I+G    G  E +V +F  +L  G+ P+  T  +VL ACS  G          + +  
Sbjct: 977  TMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMK 1036

Query: 463  HKIKPRAMHYACMIELLGREGLLDEA-FALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
              +   +     +I++  + G ++EA F  +    F      W A++    V+G+     
Sbjct: 1037 AGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLAS--WNAMMHGYIVSGDFP--- 1091

Query: 522  FAAEKLYGM--EPEKLSNYVVLLNIYNSSG---KLKEAAEVIRTLRRKGLRM 568
              A +LY +  E  + +N + L N   ++G    LK+  ++   + ++G  +
Sbjct: 1092 -KALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNL 1142



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 5/224 (2%)

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE- 294
           +++R +     + +GK+ H+  L  G   + F++  LI MYSKCGS+  A+ +FD   + 
Sbjct: 631 SILRHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDT 690

Query: 295 -KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
            +  V WN I++ +A    + +   L+  +R S V     T + + ++C   AS   A+ 
Sbjct: 691 SRDLVTWNAILSAHA--DKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAES 748

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            H   V+ G   D+    ALV+ Y+K+GRI +AR +FD M  ++V+ WN ++  Y + G 
Sbjct: 749 LHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGL 808

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
             EA+ LF +    G+RP+ VT L  L+   +S  +   W++ Q
Sbjct: 809 EYEALLLFSEFNRTGLRPDDVT-LCTLARVVKSKQNVLEWQLKQ 851



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 146/310 (47%), Gaps = 31/310 (10%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE--RNLVSCNMIIAGMI 207
           KR  + +L++G  PD ++ N ++ M+ +CG +  AR+LFD  P+  R+LV+ N I++   
Sbjct: 646 KRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHA 705

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
           D     + F LF  L   F      T A + +        S  + LH  A+K+G   +VF
Sbjct: 706 DKAR--DGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVF 763

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
           V+ AL+++Y+K G I +A+ +FD M  +  V WN ++  Y   G   EAL L+ E   +G
Sbjct: 764 VAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTG 823

Query: 328 VKMDHFTFSMIIRIC-TRLASLE-HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
           ++ D  T   + R+  ++   LE   KQ  A      +G  +         Y       D
Sbjct: 824 LRPDDVTLCTLARVVKSKQNVLEWQLKQLKA------YGTKLF-------MYDDDDDGSD 870

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
                       VI+WN  ++ +   G   EAV+ F  M+ + +  + +TF+ +LS  + 
Sbjct: 871 ------------VIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAG 918

Query: 446 SGLSERGWEI 455
               E G +I
Sbjct: 919 LNCLELGKQI 928


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/606 (37%), Positives = 364/606 (60%), Gaps = 7/606 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S+  +L   +    A++  + L+  G +   S+TY  LI  CI  R++ E   +  ++  
Sbjct: 31  SEFTRLCYQRDLPRAMKAMDSLQSHGLW-ADSATYSELIKCCISNRAVHEGNLICRHLYF 89

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G  P +++ N ++ M+V+  ++ DA +LFD+MP+RN++S   +I+       + +A  L
Sbjct: 90  NGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALEL 149

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
            + +  +       T+++++R+  G+  +   + LH   +K G   +VFV  ALID+++K
Sbjct: 150 LVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAK 206

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            G  EDA  VFDEM     + WN+II G+A +  S+ AL+L+  M+ +G   +  T + +
Sbjct: 207 LGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSV 266

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +R CT LA LE   QAH  +V+  +  D++ N+ALVD Y K G +EDA  VF++M  ++V
Sbjct: 267 LRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDV 324

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           I+W+ +I+G   +G  +EA++LFE+M  +G +PN++T + VL ACS +GL E GW  F+S
Sbjct: 325 ITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRS 384

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M + + I P   HY CMI+LLG+ G LD+A  L+     +     W  LL ACRV  N+ 
Sbjct: 385 MKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMV 444

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           L ++AA+K+  ++PE    Y +L NIY +S K     E+   +R +G++  P CSWIEV 
Sbjct: 445 LAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVN 504

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSE 637
           KQ H F+ GD SH Q  E+ +K+++++  ++  GYVPE   +L D++ EQ +  L +HSE
Sbjct: 505 KQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSE 564

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+AFGL+       ++I ++ RIC DCH   KL + +  R IV+RD  R+HHF+DG C
Sbjct: 565 KLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKC 624

Query: 698 SCGDYW 703
           SCGDYW
Sbjct: 625 SCGDYW 630


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/606 (37%), Positives = 360/606 (59%), Gaps = 12/606 (1%)

Query: 100 QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           Q++   L       + L  +L  +G    G+S +   I AC+      + K     +L T
Sbjct: 103 QMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGT 162

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
                      +L M+ +CG ++ ARR+FD MP RN V+ + +I G +      +AFLLF
Sbjct: 163 A----------LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLF 212

Query: 220 LD-LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
              L +        + A+ +RA A L+ + +G+QLH+   K G   ++    +L+ MY+K
Sbjct: 213 KAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK 272

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            G I+ A  +FDEM+ K TV ++ +++GY  +G +EEA  ++ +M+   V+ D  T   +
Sbjct: 273 AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSL 332

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           I  C+ LA+L+H + +H  ++  G   +    +AL+D Y+K GRI+ +R VF+ M  +++
Sbjct: 333 IPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDI 392

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SWN +IAGYG HG G+EA  LF +M   G  P+ VTF+ +LSACS SGL   G   F  
Sbjct: 393 VSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHV 452

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M   + + PR  HY CM++LL R G LDEA+  I+  P +    +W ALL ACRV  N++
Sbjct: 453 MGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNID 512

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           LGK  +  +  + PE   N+V+L NIY+++G+  EAAEV    + +G +  P CSWIE+ 
Sbjct: 513 LGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 572

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSE 637
              H F+ GDQSH Q+ EIYR++D +++ I K GY P+   +L D+ +E++++ L  HSE
Sbjct: 573 GSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSE 632

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+A+G+++ S+   + + ++ R+C DCH  IK I++V  R I+VRDA+RFHHFK+G C
Sbjct: 633 KLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQC 692

Query: 698 SCGDYW 703
           SCGD+W
Sbjct: 693 SCGDFW 698



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 137/531 (25%), Positives = 243/531 (45%), Gaps = 64/531 (12%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+   + AC  L      + +  + +  G + DL++   +L M+V+C  + DA  +F  M
Sbjct: 12  TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 71

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC--GSRTFATMIRASAGLELISV 249
           P R+LV+ N ++AG    G Y  A    L +  +       + T   ++   A    ++ 
Sbjct: 72  PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 131

Query: 250 GKQLHSCAL----------KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
           G  +H+  +          K    D V +  AL+DMY+KCGS+  A+ VFD M  +  V 
Sbjct: 132 GTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 191

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGV-KMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
           W+ +I G+ L     +A  L+  M   G+  +   + +  +R C  L  L   +Q HA L
Sbjct: 192 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALL 251

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
            + G   D+ A ++L+  Y+K G I+ A  +FD+M  K+ +S++AL++GY  +GR EEA 
Sbjct: 252 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAF 311

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACS-----RSGLSERGWEIFQSMSRDHKIKPRA--MH 471
            +F++M    + P+  T ++++ ACS     + G    G  I + ++ +  I      M+
Sbjct: 312 LVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMY 371

Query: 472 YAC-----------------------MIELLGREGLLDEAFAL---IRGAPFKTTKNMWA 505
             C                       MI   G  GL  EA AL   +    F      + 
Sbjct: 372 AKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFI 431

Query: 506 ALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
            LL+AC  +G +  GK     +   YG+ P ++ +Y+ ++++ +  G L EA E I+++ 
Sbjct: 432 CLLSACSHSGLVIEGKHWFHVMGHGYGLTP-RMEHYICMVDLLSRGGFLDEAYEFIQSMP 490

Query: 563 -RKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
            R  +R+     W+ +     V+        +  ++ +KV RM+ E+   G
Sbjct: 491 LRADVRV-----WVALLGACRVY--------KNIDLGKKVSRMIQELGPEG 528



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 2/130 (1%)

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           V  +++TF   ++ C+ LA     +  H   +  G   D+  ++AL+D Y K   + DA 
Sbjct: 6   VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVE--LFEQMLLNGMRPNHVTFLAVLSACSR 445
           H+F  M  +++++WNA++AGY +HG    AV   L  QM ++ +RPN  T +A+L   ++
Sbjct: 66  HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125

Query: 446 SGLSERGWEI 455
            G   +G  +
Sbjct: 126 QGALAQGTSV 135


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/586 (37%), Positives = 362/586 (61%), Gaps = 9/586 (1%)

Query: 119 ILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC 178
           I+    GFD+   T +AL++      S+ EV   +  +   G   D+Y +          
Sbjct: 132 IIRLGMGFDL--YTCNALMNMYSKFWSLEEVN-TYKKVFDEGKTSDVYSKKEK-----ES 183

Query: 179 GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMI 238
             +   R++F+ MP+R++VS N +I+G   +G + +A ++  ++        S T ++++
Sbjct: 184 YYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVL 243

Query: 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV 298
              A    +  GK++H  A++ G+  +VF+  +LIDMY+KC  ++D+  VF  + +   +
Sbjct: 244 PIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGI 303

Query: 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
            WN+IIAG   +G  +E L  + +M  + +K +H +FS I+  C  L +L   KQ H  +
Sbjct: 304 SWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYI 363

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
           +R  F  ++   SALVD Y+K G I  AR +FDKM   +++SW A+I GY  HG   +A+
Sbjct: 364 IRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAI 423

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478
            LF++M + G++PN+V F+AVL+ACS +GL +  W+ F SM++D++I P   HYA + +L
Sbjct: 424 SLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADL 483

Query: 479 LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538
           LGR G L+EA+  I     + T ++W+ LL ACRV+ N+EL +  ++KL+ ++P+ +  Y
Sbjct: 484 LGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAY 543

Query: 539 VVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIY 598
           V+L NIY+++G+ K+A ++   +R KG++  PACSWIE+K + H F++GD+SH     I 
Sbjct: 544 VLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRIN 603

Query: 599 RKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIV 657
             +  ++ ++ + GYV +   +L DV+E+++R +L  HSE+LA+ FG+I+T   T +++ 
Sbjct: 604 EALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVT 663

Query: 658 QSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++ R+C DCH A K I+ + GREIVVRD SRFHHFKDG CSCGD+W
Sbjct: 664 KNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 86/332 (25%), Positives = 173/332 (52%), Gaps = 31/332 (9%)

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER-NLVSCNM 201
           ++S  + K++ + +L T   P   + + +L ++    ++ D+  +F+ +P     ++   
Sbjct: 18  VKSKSQAKQLHAQILRTSL-PSPSLLSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKS 76

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           II      G +L +   F+ +           F +++++   ++ +  G+ +H C +++G
Sbjct: 77  IIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLG 136

Query: 262 FGDNVFVSCALIDMYSKCGSIEDA---QGVFDE--------------------------M 292
            G +++   AL++MYSK  S+E+    + VFDE                          M
Sbjct: 137 MGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMM 196

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            ++  V WNT+I+G A +G  E+AL +  EM ++ ++ D FT S ++ I     +L   K
Sbjct: 197 PKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGK 256

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           + H   +R+G+  D+   S+L+D Y+K  R++D+  VF  +   + ISWN++IAG   +G
Sbjct: 257 EIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNG 316

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
             +E ++ F+QML+  ++PNHV+F +++ AC+
Sbjct: 317 MFDEGLKFFQQMLIAKIKPNHVSFSSIMPACA 348



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 149/333 (44%), Gaps = 35/333 (10%)

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM-SE 294
           T+++  + ++  S  KQLH+  L+        +S  ++ +YS    + D+  +F+ + S 
Sbjct: 10  TLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLS-TILSIYSNLNLLHDSLLIFNSLPSP 68

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
            TT+ W +II  Y  HG    +L  + +M  SG   DH  F  +++ CT +  L   +  
Sbjct: 69  PTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESV 128

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDA---------------------------- 386
           H  ++R G G D+   +AL++ YSK+  +E+                             
Sbjct: 129 HGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGS 188

Query: 387 -RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
            R VF+ M  ++++SWN +I+G   +G  E+A+ +  +M    +RP+  T  +VL   + 
Sbjct: 189 LRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAE 248

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
                +G EI     R+          + +I++  +   +D++  +    P +     W 
Sbjct: 249 YVNLLKGKEIHGYAIRN-GYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLP-QHDGISWN 306

Query: 506 ALLTACRVNGNLELG-KFAAEKLYG-MEPEKLS 536
           +++  C  NG  + G KF  + L   ++P  +S
Sbjct: 307 SIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVS 339


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/600 (36%), Positives = 367/600 (61%), Gaps = 5/600 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N  +++AL ++  ++        S T+  L+ AC GL  ++  + V + +   GFE D++
Sbjct: 97  NNHFQDALLMYSKMQL-ARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVF 155

Query: 167 MRNRVLLMHVRCGMMIDARRLFD--EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           ++N ++ ++ +C  +  AR +F+   +PER +VS   I++    +G+ +EA  +F  + +
Sbjct: 156 VQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRK 215

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                      +++ A   L+ +  G+ +H+  +KMG      +  +L  MY+KCG +  
Sbjct: 216 MDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVAT 275

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+ +FD+M     + WN +I+GYA +G++++A+DL++EM +  V+ D  + +  I  C +
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQ 335

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           + SLE A+     + R  +  D+  +SAL+D ++K G +E AR VFD+ L ++V+ W+A+
Sbjct: 336 VGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAM 395

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I GYG HG+  EA+ L+  M  +G+ PN VTFL +L AC+ SG+   GW  F  M+ DHK
Sbjct: 396 IVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMA-DHK 454

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           I P+  HYAC+I+LLGR G LD+A+ +I+  P +    +W ALL+AC+ + ++ELGK+AA
Sbjct: 455 INPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAA 514

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
           ++L+ ++P    +YV L N+Y ++      AEV   ++ KGL     CSW+EV+ +   F
Sbjct: 515 QQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGF 574

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAF 643
             GD+SH + +EI R+V+ +   + + G+V  +   L D+ DE+ +  L  HSE++ +A+
Sbjct: 575 RVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERITIAY 634

Query: 644 GLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           GLI+T   T L+I ++ R C +CH A KLI+ + GREIVVRD +RFHHFKDG+CSCGDYW
Sbjct: 635 GLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 121/480 (25%), Positives = 233/480 (48%), Gaps = 48/480 (10%)

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
           +++++ + +L  G +   ++  +++      G +  AR++FD++P   +   N II G  
Sbjct: 36  QLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYS 95

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
            +  + +A L++  +        S TF  +++A  GL  + +G+ +H+   ++GF  +VF
Sbjct: 96  RNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVF 155

Query: 268 VSCALIDMYSKCGSIEDAQGVFD--EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
           V   LI +Y+KC  +  A+ VF+   + E+T V W  I++ YA +G   EAL+++ +MR 
Sbjct: 156 VQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRK 215

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
             VK D      ++   T L  LE  +  HA +++ G   +     +L   Y+K G++  
Sbjct: 216 MDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVAT 275

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           A+ +FDKM   N+I WNA+I+GY  +G  ++A++LF +M+   +RP+ ++  + +SAC++
Sbjct: 276 AKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQ 335

Query: 446 SGLSERGWEIFQSMSR------------------------------DHKIKPRAMHYACM 475
            G  E+   + + +SR                              D  +    + ++ M
Sbjct: 336 VGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAM 395

Query: 476 IELLGREGLLDEAFALIRGAP---FKTTKNMWAALLTACRVNGNLELGKFAAEKL--YGM 530
           I   G  G   EA +L R             +  LL AC  +G +  G +   ++  + +
Sbjct: 396 IVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMADHKI 455

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR-RKGLR----MLPACSWIEVKKQPHVFL 585
            P++  +Y  ++++   +G L +A EVI+ +  + G+     +L AC     KK  HV L
Sbjct: 456 NPQQ-QHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSAC-----KKHRHVEL 509


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/573 (38%), Positives = 351/573 (61%), Gaps = 3/573 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T  +L+SAC+ L      K++ S+++ +G   D+++   ++ M+ +   + ++R++F+ M
Sbjct: 250 TLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTM 309

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
              N++S   +I+G + S    EA  LF ++          TF+++++A A L    +GK
Sbjct: 310 LHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGK 369

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           QLH   +K+G      V  +LI+MY++ G++E A+  F+ + EK  + +NT     A   
Sbjct: 370 QLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKAL 429

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
            S+E+ +  +E+  +GV    FT++ ++     + ++   +Q HA +V+ GFG ++  N+
Sbjct: 430 DSDESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINN 487

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           AL+  YSK G  E A  VF+ M  +NVI+W ++I+G+  HG   +A+ELF +ML  G++P
Sbjct: 488 ALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKP 547

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           N VT++AVLSACS  GL +  W+ F SM  +H I PR  HYACM++LLGR GLL EA   
Sbjct: 548 NEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEF 607

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           I   PF     +W   L +CRV+ N +LG+ AA+K+   EP   + Y++L N+Y S G+ 
Sbjct: 608 INSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRW 667

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
            + A + +++++K L      SWIEV  Q H F  GD SH Q ++IY ++D + L+I   
Sbjct: 668 DDVAALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNL 727

Query: 612 GYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           GY+P    +L DV DEQ+++ L  HSEK+AVA+ LI+T    P+++ ++ R+C DCH AI
Sbjct: 728 GYIPNTDFVLHDVEDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAI 787

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           K I++VTGREIVVRDA+RFHH KDG CSC DYW
Sbjct: 788 KYISIVTGREIVVRDANRFHHIKDGKCSCNDYW 820



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 167/316 (52%), Gaps = 7/316 (2%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM--PE 193
           L+ ACI   ++   K +   ++ +G   D  + N ++ ++ +CG   +A  +F  M   +
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC---GSRTFATMIRASAGLELISVG 250
           R+LVS + II+   ++     A L FL + +   +        F  ++R+ +     + G
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTG 164

Query: 251 KQLHSCALKMGFGD-NVFVSCALIDMYSKCG-SIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
             + +  LK G+ D +V V CALIDM++K G  I+ A+ VFD+M  K  V W  +I  Y+
Sbjct: 165 LAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYS 224

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
             G  ++A+DL+  +  S    D FT + ++  C  L      KQ H+ ++R G   D+ 
Sbjct: 225 QLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVF 284

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
               LVD Y+K   +E++R +F+ ML  NV+SW ALI+GY    + +EA++LF  ML   
Sbjct: 285 VGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGH 344

Query: 429 MRPNHVTFLAVLSACS 444
           + PN  TF +VL AC+
Sbjct: 345 VTPNCFTFSSVLKACA 360



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 87/182 (47%), Gaps = 12/182 (6%)

Query: 315 EALDLYYE-MRDSGVKMDHFTFS------MIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           +A DL +E +R +  ++D  T S      ++++ C R  +LE  K  H  L+  G  LD 
Sbjct: 15  QAKDLKFESLRKAISRLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDS 74

Query: 368 VANSALVDFYSKWGRIEDARHVFDKM--LCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           V  ++L+  YSK G  E+A  +F  M    ++++SW+A+I+ + N+     A+  F  ML
Sbjct: 75  VLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHML 134

Query: 426 L---NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
               N + PN   F A+L +CS       G  IF  + +             +I++  + 
Sbjct: 135 QCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKG 194

Query: 483 GL 484
           GL
Sbjct: 195 GL 196



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 91/189 (48%), Gaps = 8/189 (4%)

Query: 128 VGSS--TYDALIS--ACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183
           VG+S  TY  L+S  ACIG  +I + +++ + ++ +GF  +L + N ++ M+ +CG    
Sbjct: 444 VGASPFTYACLLSGAACIG--TIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEA 501

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A ++F++M  RN+++   II+G    G   +A  LF ++ E        T+  ++ A + 
Sbjct: 502 ALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSH 561

Query: 244 LELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWN 301
           + LI    K  +S          +     ++D+  + G + +A    + M  +   + W 
Sbjct: 562 VGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWR 621

Query: 302 TIIAGYALH 310
           T +    +H
Sbjct: 622 TFLGSCRVH 630


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/631 (37%), Positives = 368/631 (58%), Gaps = 11/631 (1%)

Query: 83  SSLPDTQM------KKPSAGICSQ---IEKLVLNKRYREALELFEILEFEGGFDVGSSTY 133
           S L D +M      K P   + S    I   VL+   + ALEL   ++   G      T 
Sbjct: 248 SKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMK-SSGLVPNVFTL 306

Query: 134 DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193
            +++ AC G  +    +++  +M+    + D Y+   ++ M+ + G++ DA+++FD +P+
Sbjct: 307 SSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQ 366

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL 253
           R+LV  N +I+G      + EA  LF  + +E  D    T A +++++A LE IS  +Q+
Sbjct: 367 RDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQV 426

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           H+ A K+GF  +  V   LID Y KC  +  A  VF++      + + ++I   +   + 
Sbjct: 427 HALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHG 486

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
           E+A+ L+ EM   G+  D F  S ++  C  L++ E  KQ HA L++  F  D+ A +AL
Sbjct: 487 EDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNAL 546

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           V  Y+K G IEDA   F  +  K V+SW+A+I G   HG G+ A+++F +M+   + PNH
Sbjct: 547 VYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNH 606

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
           +T  +VL AC+ +GL +     F SM     I+    HYACMI+LLGR G LD+A  L+ 
Sbjct: 607 ITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVN 666

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
             PF+T   +W ALL A RV+ + ELG+ AAEKL+ +EPEK   +V+L N Y S+G   +
Sbjct: 667 SMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDD 726

Query: 554 AAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGY 613
            A+V + ++   ++  PA SW+E+K + H F+ GD+SH + ++IY K+D +   ++K GY
Sbjct: 727 VAKVRKLMKDSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGY 786

Query: 614 VPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKL 672
           VP  +  L DVD+ E+  +LS+HSE+LAVAF LI+T    P+++ ++ RIC DCH A K 
Sbjct: 787 VPNVEVDLHDVDKNEKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHAAFKF 846

Query: 673 IAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I+ +  REI++RD +RFHHF+DG CSC DYW
Sbjct: 847 ISDIVSREIIIRDINRFHHFRDGACSCRDYW 877



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 112/381 (29%), Positives = 196/381 (51%), Gaps = 8/381 (2%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T   L++     +S+ +   + +++L +G       RN +L  + +C +   ARR+FDE+
Sbjct: 6   TIGPLLTRYAATQSLLQGAHIHAHLLKSGLFA--VFRNHLLSFYSKCRLPGSARRVFDEI 63

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P+   VS + ++    ++    +A   F  +      C       +++ +        G 
Sbjct: 64  PDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPD---AGFGT 120

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALH 310
           QLH+ A+  G G ++FV+ AL+ MY   G +++A+ VFDE   E+ TV WN +++ Y  +
Sbjct: 121 QLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKN 180

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
                A+ ++ EM   GV+ + F FS ++  CT    LE  ++ HA ++R G+  D+   
Sbjct: 181 DRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTA 240

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           +ALVD YSK G I  A  VF K+   +V+SWNA I+G   HG  + A+EL  QM  +G+ 
Sbjct: 241 NALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLV 300

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           PN  T  ++L AC+ SG    G +I   M + +      + +  ++++  + GLLD+A  
Sbjct: 301 PNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG-LVDMYAKHGLLDDAKK 359

Query: 491 LIRGAPFKTTKNMWAALLTAC 511
           +    P +    +W AL++ C
Sbjct: 360 VFDWIPQRDLV-LWNALISGC 379



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/466 (25%), Positives = 234/466 (50%), Gaps = 18/466 (3%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N R   A+++F  + + GG       +  +++AC G R +   ++V + ++ TG++ D
Sbjct: 178 VKNDRCSHAVKVFGEMVW-GGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKD 236

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           ++  N ++ M+ + G +  A  +F ++PE ++VS N  I+G +  G    A  L L +  
Sbjct: 237 VFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKS 296

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                   T +++++A AG    ++G+Q+H   +K     + +++  L+DMY+K G ++D
Sbjct: 297 SGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDD 356

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+ VFD + ++  V WN +I+G +      EAL L+  MR  G  ++  T + +++    
Sbjct: 357 AKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTAS 416

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           L ++   +Q HA   + GF  D    + L+D Y K   +  A  VF+K    ++I++ ++
Sbjct: 417 LEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSM 476

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I        GE+A++LF +ML  G+ P+     ++L+AC+     E+G ++       H 
Sbjct: 477 ITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHA-----HL 531

Query: 465 IKPRAMHYA----CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
           IK + M        ++    + G +++A     G P K   + W+A++     +G+   G
Sbjct: 532 IKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVS-WSAMIGGLAQHGH---G 587

Query: 521 KFAAEKLYGMEPEKLS-NYVVLLNIY---NSSGKLKEAAEVIRTLR 562
           K A +  + M  E +S N++ + ++    N +G + EA     +++
Sbjct: 588 KRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMK 633



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 156/289 (53%), Gaps = 1/289 (0%)

Query: 157 LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP-ERNLVSCNMIIAGMIDSGDYLEA 215
           ++TG   D+++ N ++ M+   G + +AR +FDE   ERN VS N +++  + +     A
Sbjct: 127 MATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHA 186

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
             +F ++           F+ ++ A  G   +  G+++H+  ++ G+  +VF + AL+DM
Sbjct: 187 VKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDM 246

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           YSK G I  A  VF ++ E   V WN  I+G  LHG+ + AL+L  +M+ SG+  + FT 
Sbjct: 247 YSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTL 306

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
           S I++ C    +    +Q H  +V+     D      LVD Y+K G ++DA+ VFD +  
Sbjct: 307 SSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQ 366

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           ++++ WNALI+G  +  +  EA+ LF +M   G   N  T  AVL + +
Sbjct: 367 RDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTA 415


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/594 (37%), Positives = 351/594 (59%), Gaps = 6/594 (1%)

Query: 113 ALELFEILEFEG-GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           A +LF   E  G G      T  +LI AC G+ +++  K +  Y+L  G   D+ +    
Sbjct: 215 AFQLF--FEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSF 272

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ + G +  AR +F +MP RNLVS N +I+G + +G   E+F LF  L         
Sbjct: 273 VDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDL 332

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T  ++++  +    ++ GK LH CA++  F  N+ +S A++D+YSKCGS++ A  VF+ 
Sbjct: 333 TTIVSLLQGCSQTASLATGKILHGCAIR-SFESNLILSTAIVDLYSKCGSLKQATFVFNR 391

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M ++  + W  ++ G A +G++E+AL L+ +M++ G+  +  TF  ++  C  L SL+  
Sbjct: 392 MKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRG 451

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK-MLCKNVISWNALIAGYGN 410
           +  H  L R GF  DIV  +ALVD Y+K G+I  A  +F    + K+V+ WN++I GYG 
Sbjct: 452 RSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGM 511

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           HG G +AV ++ +M+  G++PN  TFL++LSACS S L E+G  +F SM RDH I+P   
Sbjct: 512 HGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEK 571

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HYAC+++LL R G  +EA ALI   PF+    +  ALL+ CR + N+ LG   ++KL  +
Sbjct: 572 HYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLAL 631

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           +      Y++L NIY  + +  +   +   +R +GL+  P  S +E     H F +GD S
Sbjct: 632 DAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNS 691

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTS 649
           H   +EIY  ++ +   +   GYVP+   +L DVDE+ + R+L  HSE+LA+AFGL+ T 
Sbjct: 692 HPNWEEIYHFLESLRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTP 751

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             + ++I ++ R+C DCH   K I+ +  REI+VRDA+RFHHF +G CSCGDYW
Sbjct: 752 AGSLIRITKNLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 128/482 (26%), Positives = 246/482 (51%), Gaps = 15/482 (3%)

Query: 89  QMKKPSAGICSQIEKLVLNK-RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
           Q  +P   +C+ +    L   RYRE LELF ++      +V S +    + AC       
Sbjct: 89  QFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRN-LEVDSCSCTFALKACASSLDYE 147

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
               + S  +  G E + ++ + ++   V+ G + +A+R+FD MP +++V  N II G +
Sbjct: 148 MGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYV 207

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
            +G +  AF LF ++          T  ++I+A  G+  + +GK +H   L +G G+++ 
Sbjct: 208 QAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDIL 267

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
           V  + +DMYSK G IE A+ VF +M  +  V WN +I+G   +G   E+ DL++ +  S 
Sbjct: 268 VLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSS 327

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
              D  T   +++ C++ ASL   K  H   +R  F  +++ ++A+VD YSK G ++ A 
Sbjct: 328 GGFDLTTIVSLLQGCSQTASLATGKILHGCAIR-SFESNLILSTAIVDLYSKCGSLKQAT 386

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
            VF++M  +NVI+W A++ G   +G  E+A+ LF QM   G+  N VTF++++ +C+  G
Sbjct: 387 FVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLG 446

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
             +RG  I   + R        ++   ++++  + G ++ A  +           +W ++
Sbjct: 447 SLKRGRSIHGHLFR-LGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSM 505

Query: 508 LTACRVNGNLELGKFAAEKLY------GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           +T   ++G+     + A  +Y      G++P + + ++ LL+  + S  +++   +  ++
Sbjct: 506 ITGYGMHGH----GYQAVGIYHKMIEEGLKPNQ-TTFLSLLSACSHSRLVEQGISLFNSM 560

Query: 562 RR 563
            R
Sbjct: 561 ER 562



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 203/423 (47%), Gaps = 12/423 (2%)

Query: 149 VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
           VK   + +++     D ++  +++  +     +  AR +FD+  +   + CN ++ G + 
Sbjct: 48  VKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQ 107

Query: 209 SGDY---LEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
           SG Y   LE F L      E   C S TFA  ++A A      +G ++ S A++ G   N
Sbjct: 108 SGRYRETLELFGLMRSRNLEVDSC-SCTFA--LKACASSLDYEMGMEIISSAVEKGMEKN 164

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
            FV  ++I    K G I +AQ VFD M  K  V WN+II GY   G  + A  L++EM  
Sbjct: 165 RFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHG 224

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
           SG+K    T + +I+ C  + +L+  K  H  ++  G G DI+  ++ VD YSK G IE 
Sbjct: 225 SGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIES 284

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           AR VF KM  +N++SWNA+I+G   +G   E+ +LF +++ +    +  T +++L  CS+
Sbjct: 285 ARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQ 344

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
           +     G  +     R    +   +    +++L  + G L +A  +      +     W 
Sbjct: 345 TASLATGKILHGCAIRS--FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVIT-WT 401

Query: 506 ALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           A+L     NG+ E  L  FA  +  G+    ++ +V L++     G LK    +   L R
Sbjct: 402 AMLVGLAQNGHAEDALRLFAQMQEEGIAANSVT-FVSLVHSCAHLGSLKRGRSIHGHLFR 460

Query: 564 KGL 566
            G 
Sbjct: 461 LGF 463


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/575 (38%), Positives = 344/575 (59%), Gaps = 2/575 (0%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           S    L+  C   RS    +   + ++  G E D+   N ++ M+ +C ++  AR+ F+E
Sbjct: 44  SNLHYLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNE 103

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           MP ++LVS N +I  +  + +  EA  L + +  E +     T ++++   A    I   
Sbjct: 104 MPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILEC 163

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
            QLH+ ++K     N FV  AL+ +Y+KC SI+DA  +F+ M EK  V W++++AGY  +
Sbjct: 164 MQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQN 223

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G+ EEAL ++   +  G   D F  S  +  C  LA+L   KQ HA   + GFG +I  +
Sbjct: 224 GFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVS 283

Query: 371 SALVDFYSKWGRIEDARHVFDKML-CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
           S+L+D Y+K G I +A  VF  +L  ++++ WNA+I+G+  H R  EA+ LFE+M   G 
Sbjct: 284 SSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGF 343

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
            P+ VT++ VL+ACS  GL E G + F  M R H + P  +HY+CMI++LGR GL+ +A+
Sbjct: 344 FPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAY 403

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549
            LI   PF  T +MW +LL +C++ GN+E  + AA+ L+ MEP    N+++L NIY ++ 
Sbjct: 404 DLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANK 463

Query: 550 KLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEIS 609
           K  E A   + LR   +R     SWIE+K + H F  G+++H Q  +IY K+D +++E+ 
Sbjct: 464 KWDEVARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVELK 523

Query: 610 KHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHN 668
           K  Y  +    L DV+E ++Q +L +HSEKLA+ FGL+      P++I+++ RIC DCH 
Sbjct: 524 KLNYKVDTSNDLHDVEENRKQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLRICGDCHT 583

Query: 669 AIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            +KL++  T REI+VRD +RFHHFKDG CSCG++W
Sbjct: 584 FMKLVSKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 188/372 (50%), Gaps = 15/372 (4%)

Query: 84  SLPDTQMKK----PSAGICS---QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDAL 136
           SL D+  KK    P   + S    I  L  N   REAL+L   ++ EG       T  ++
Sbjct: 92  SLVDSARKKFNEMPVKSLVSWNTVIGALTQNAEDREALKLLIQMQREGT-PFNEFTISSV 150

Query: 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL 196
           +  C    +I E  ++ ++ +    + + ++   +L ++ +C  + DA ++F+ MPE+N 
Sbjct: 151 LCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNA 210

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256
           V+ + ++AG + +G + EA L+F +      D      ++ + A AGL  +  GKQ+H+ 
Sbjct: 211 VTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAI 270

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE-KTTVGWNTIIAGYALHGYSEE 315
           + K GFG N++VS +LIDMY+KCG I +A  VF  + E ++ V WN +I+G+A H  + E
Sbjct: 271 SHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPE 330

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALV 374
           A+ L+ +M+  G   D  T+  ++  C+ +   E  ++    +VR H     ++  S ++
Sbjct: 331 AMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMI 390

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVIS-WNALIAG---YGNHGRGEEAVELFEQMLLNGMR 430
           D   + G +  A  + ++M      S W +L+A    YGN    E A +   +M  N   
Sbjct: 391 DILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNA- 449

Query: 431 PNHVTFLAVLSA 442
            NH+    + +A
Sbjct: 450 GNHILLANIYAA 461


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/603 (36%), Positives = 364/603 (60%), Gaps = 24/603 (3%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           GF++    Y+A+++ C+  R+ RE +RV ++M+ T + P +++R R+++++ +C  + DA
Sbjct: 238 GFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDA 297

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF-LLFLDLWEEF----------------- 226
             +FDEMPERN+VS   +I+     G   +A  L F D+                     
Sbjct: 298 HNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRP 357

Query: 227 ---SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
              ++    TFAT++ +        +G+Q+HS  +K+ + D+VFV  +L+DMY+K G I 
Sbjct: 358 WVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIH 417

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
           +A+ VF+ + E+  V    II+GYA  G  EEAL+L+  ++  G+K ++ T++ ++   +
Sbjct: 418 EARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALS 477

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            LA+L+  KQ H  ++R      +V  ++L+D YSK G +  +R +FD M  + VISWNA
Sbjct: 478 GLAALDLGKQVHNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNA 537

Query: 404 LIAGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           ++ GY  HG G E ++LF  M     ++P+ VT LAVLS CS  GL ++G  IF  MS  
Sbjct: 538 MLVGYSKHGEGREVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSG 597

Query: 463 H-KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
             +++P+  HY C+++LLGR G ++EAF  I+  PF+ T  +W +LL ACRV+ N+++G+
Sbjct: 598 KIEVEPKMEHYGCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGE 657

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
           FA ++L  +EP    NYV+L N+Y S+G+ ++ + +   + +K +   P  S IE+ +  
Sbjct: 658 FAGQQLLEIEPGNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVL 717

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLA 640
           H F + D+SH + +EI  KV  +     + GYVP+   +L DVD EQ++++L  HSEKLA
Sbjct: 718 HTFHASDRSHPRREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEKILLGHSEKLA 777

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           ++FGLI +    P++++++ RIC DCHN  K I+ V GRE+ +RD +RFH    G CSC 
Sbjct: 778 LSFGLIASPASVPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHRIVGGKCSCE 837

Query: 701 DYW 703
           DYW
Sbjct: 838 DYW 840



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 143/358 (39%), Gaps = 76/358 (21%)

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
           +M   G  M    ++ I+  C    +    ++ HA +++  +   +   + L+  Y+K  
Sbjct: 233 QMALHGFNMKFENYNAILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCD 292

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF---EQMLLNGM--------- 429
            + DA +VFD+M  +NV+SW A+I+ Y   G   +A+ LF    ++ L G+         
Sbjct: 293 SLGDAHNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLS 352

Query: 430 ---------RPNHVTFLAVLSACSRS--------------GLSER-----GWEIFQSMSR 461
                     PN  TF  VL++C+ S               L+       G  +    ++
Sbjct: 353 NPNRPWVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAK 412

Query: 462 DHKIKPRAMHYACM-----------IELLGREGLLDEAFALIR---GAPFKTTKNMWAAL 507
           D KI      + C+           I    + GL +EA  L R   G   K+    +  +
Sbjct: 413 DGKIHEARTVFECLPERDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGV 472

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN----IYNSSGKLKEAAEVIRTLRR 563
           LTA      L+LGK     +   E   + ++VVL N    +Y+  G L  +  +  T+  
Sbjct: 473 LTALSGLAALDLGKQVHNHVLRSE---IPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYE 529

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLL 621
           + +      SW       +  L G   H + +E+  K+  +M E +K    P+  T+L
Sbjct: 530 RTV-----ISW-------NAMLVGYSKHGEGREVL-KLFTLMREETK--VKPDSVTIL 572


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/620 (36%), Positives = 368/620 (59%), Gaps = 8/620 (1%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D+   + +    S I   V N    EA ELF  +  EG   +  + +  +I  C  ++ +
Sbjct: 252 DSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEG-VKLTQTIFATVIKLCANIKEM 310

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE-RNLVSCNMIIAG 205
              K++   ++  G + DL ++  +++ + +C  + DA +LF  M   +N+VS   II+G
Sbjct: 311 SFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISG 370

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
            + +G    A  LF  +  E       T++T++ A+A +       Q+H+  +K  + ++
Sbjct: 371 YVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVS----PSQIHALVVKTNYENS 426

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
             V  AL D YSK G   +A  +F+ + EK  V W+ +++GYA  G  E A+ ++ ++  
Sbjct: 427 PSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAK 486

Query: 326 SGVKMDHFTFSMIIRICTR-LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
            GV+ + FTFS ++  C    AS+E  KQ H+  ++ GF   +  +SALV  Y+K G IE
Sbjct: 487 EGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIE 546

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            A  VF + + ++++SWN++I+GY  HG G++++++FE+M    +  + +TF+ V+SAC+
Sbjct: 547 SANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACT 606

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
            +GL   G   F  M +D+ I P   HY+CM++L  R G+L++A  LI   PF     +W
Sbjct: 607 HAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIW 666

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
             LL ACRV+ N++LG+ AAEKL  ++P+  + YV+L NIY ++G  +E A+V + +  K
Sbjct: 667 RTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMK 726

Query: 565 GLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV 624
            ++     SWIEVK +   F++GD SH Q+  IY K++ + + +   GY P+ K +L DV
Sbjct: 727 KVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDV 786

Query: 625 DEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVV 683
           +E+ + V LS HSE+LA+AFGLI T   TP+QIV++ R+C DCH  IKLI+ + GR+IVV
Sbjct: 787 EEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVV 846

Query: 684 RDASRFHHFKDGMCSCGDYW 703
           RD++RFHHFK G CSCGDYW
Sbjct: 847 RDSNRFHHFKGGSCSCGDYW 866



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 115/338 (34%), Positives = 185/338 (54%), Gaps = 4/338 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDAL-ISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           N + +EAL LF  L   G    GSS    L +  C+  R +   K+V    +  GF  D+
Sbjct: 70  NDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVG--KQVHCQCIKCGFVEDV 127

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            +   ++ M+++   + D  R+FDEM  +N+VS   ++AG   +G   +A  LF  +  E
Sbjct: 128 SVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLE 187

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                  TFA ++   A    +  G Q+H+  +K G    +FV  ++++MYSK   + DA
Sbjct: 188 GIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDA 247

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
           + VFD M  +  V WN++IAG+  +G   EA +L+Y MR  GVK+    F+ +I++C  +
Sbjct: 248 KAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANI 307

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-CKNVISWNAL 404
             +  AKQ H  ++++G   D+   +AL+  YSK   I+DA  +F  M   +NV+SW A+
Sbjct: 308 KEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAI 367

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           I+GY  +GR + A+ LF QM   G+RPNH T+  +L+A
Sbjct: 368 ISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTA 405



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 146/261 (55%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           +++LFDE P++ L   N ++     +    EA  LFL L    S     + + +++    
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L    VGKQ+H   +K GF ++V V  +L+DMY K  S+ED + VFDEM  K  V W ++
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           +AGY  +G +E+AL L+ +M+  G+K + FTF+ ++       ++E   Q H  +++ G 
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGL 224

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
              I   +++V+ YSK   + DA+ VFD M  +N +SWN++IAG+  +G   EA ELF +
Sbjct: 225 DSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYR 284

Query: 424 MLLNGMRPNHVTFLAVLSACS 444
           M L G++     F  V+  C+
Sbjct: 285 MRLEGVKLTQTIFATVIKLCA 305



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 129/249 (51%), Gaps = 5/249 (2%)

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           +Q +FDE  ++     N ++  ++ +  ++EAL+L+  +R SG   D  + S ++++C  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           L      KQ H   ++ GF  D+   ++LVD Y K   +ED   VFD+M  KNV+SW +L
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           +AGY  +G  E+A++LF QM L G++PN  TF AVL   +  G  E+G ++  +M     
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQV-HTMVIKSG 223

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           +         M+ +  +  ++ +A A+      +   + W +++     NG L+L  F  
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVS-WNSMIAGFVTNG-LDLEAF-- 279

Query: 525 EKLYGMEPE 533
           E  Y M  E
Sbjct: 280 ELFYRMRLE 288


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/593 (37%), Positives = 358/593 (60%), Gaps = 2/593 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E+L LFE +  EG      +    ++ AC  L ++ + + +  Y+    F+ D+ +   +
Sbjct: 114 ESLVLFEKMREEGVVPDKVAMV-TVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAM 172

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG +  AR +FD M E+N++S + +IA     G   +A  LF  +         
Sbjct: 173 IDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDK 232

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T A+++ A + L+ + +G+ +H    K G   + FV  AL+DMY KC  IEDA+ +FD+
Sbjct: 233 ITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDK 292

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M E+  V W  +I GYA  G + E+L L+ +MR+ GV  D      ++  C +L ++  A
Sbjct: 293 MPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKA 352

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           +     + R  F LD++  +A++D ++K G +E AR +FD+M  KNVISW+A+IA YG H
Sbjct: 353 RTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYH 412

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G+G +A++LF  ML +G+ PN +T +++L ACS +GL E G   F  M  D+ ++    H
Sbjct: 413 GQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKH 472

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           Y C+++LLGR G LDEA  LI     +  + +W A L ACR + ++ L + AA  L  ++
Sbjct: 473 YTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQ 532

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P+   +Y++L NIY ++G+ ++ A+    + ++ L+ +P  +WIEV  + H F  GD +H
Sbjct: 533 PQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTH 592

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSD 650
            ++KEIY  +  +  ++   GYVP+   +L DVDE+ +  +L  HSEKLA+AFGLI T +
Sbjct: 593 PRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPE 652

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            TP++I+++ R+C DCH   KL++ +TGR I+VRDA+RFHHFK+G CSCGDYW
Sbjct: 653 HTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 218/425 (51%), Gaps = 5/425 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T   +I AC  L++++  + +   +   G + D ++   ++ M+V+C  + DAR LFD+M
Sbjct: 32  TLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKM 91

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            ER+LV+  ++I G  + G   E+ +LF  + EE          T++ A A L  +   +
Sbjct: 92  QERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKAR 151

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            +     +  F  +V +  A+IDMY+KCG +E A+ +FD M EK  + W+ +IA Y  HG
Sbjct: 152 IIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHG 211

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
              +ALDL+  M  SG+  D  T + ++  C+ L +L+  +  H  + + G  LD    +
Sbjct: 212 QGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCA 271

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           ALVD Y K   IEDAR +FDKM  +++++W  +I GY   G   E++ LF++M   G+ P
Sbjct: 272 ALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVP 331

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           + V  + V+ AC++ G   +   I   + R  K +   +    MI++  + G ++ A  +
Sbjct: 332 DKVAMVTVVFACAKLGAMHKARTIDDYIQR-KKFQLDVILGTAMIDMHAKCGCVESAREI 390

Query: 492 IRGAPFKTTKNMWAALLTACRVNGN--LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549
                 K   + W+A++ A   +G     L  F      G+ P K++  V LL   + +G
Sbjct: 391 FDRMEEKNVIS-WSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKIT-LVSLLYACSHAG 448

Query: 550 KLKEA 554
            ++E 
Sbjct: 449 LVEEG 453



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 116/236 (49%), Gaps = 4/236 (1%)

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           ++ G+A  G        + E+   G + D++T   +IR C  L +L+  +  H  + + G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
             LD    +ALVD Y K   IEDAR +FDKM  +++++W  +I GY   G+  E++ LFE
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFE 120

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           +M   G+ P+ V  + V+ AC++ G   +   I   + R  K +   +    MI++  + 
Sbjct: 121 KMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQR-KKFQLDVILGTAMIDMYAKC 179

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN--LELGKFAAEKLYGMEPEKLS 536
           G ++ A  +      K   + W+A++ A   +G     L  F      GM P+K++
Sbjct: 180 GCVESAREIFDRMEEKNVIS-WSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKIT 234


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/623 (36%), Positives = 364/623 (58%), Gaps = 7/623 (1%)

Query: 85  LPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLR 144
           L D   +K +    + I  L       EA  LF  ++ +   +V   T   ++ AC+ + 
Sbjct: 191 LFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEIS 250

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
            +R +K +  Y +  GF+ D  + N  +  + +CGM+I A R+F  M  + + S N +I 
Sbjct: 251 QLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIG 310

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
           G   +GD  +A  L++ +          T  +++ ASA L+ +  GK++H   L+ G   
Sbjct: 311 GCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEI 370

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           + F+  +L+ +Y  CG    A+ +FD M EK++V WN +I+GY+ +G  E+AL L+ ++ 
Sbjct: 371 DSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLV 430

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
             G +        ++  C++ ++L   K+ H   ++     D+    + +D Y+K G I+
Sbjct: 431 SDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIK 490

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           ++R VFD +  K++ SWNA+IA YG HG GEE++ELFE+M   G  P+  TF+ +L+ CS
Sbjct: 491 ESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCS 550

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
            +GL E G + F  M   H I+P+  HYAC++++LGR G LD+A  L+   P +    +W
Sbjct: 551 HAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVW 610

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           ++LL+ CR  G LE+G+  AEKL  +EP+ + NYV L N+Y  SG+  +   V + ++  
Sbjct: 611 SSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDI 670

Query: 565 GLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI---YRKVDRMMLEISKHGYVPEEKTLL 621
           GL+    CSWIE+  + H F++GD    Q+KE+   +RK+++ M +I   GY P    +L
Sbjct: 671 GLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSMTWRKLEKKMCKI---GYKPNTSAVL 727

Query: 622 PDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGRE 680
            DVDE+++   L  HSEKLA+ FGL+NT+  T L+I ++ RIC DCHNA K ++ VTGRE
Sbjct: 728 HDVDEEKKIEKLRGHSEKLAICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGRE 787

Query: 681 IVVRDASRFHHFKDGMCSCGDYW 703
           I++RD  RFHHFKDG+CSCGDYW
Sbjct: 788 IIIRDNKRFHHFKDGLCSCGDYW 810



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 155/560 (27%), Positives = 265/560 (47%), Gaps = 59/560 (10%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGL--RSIREVKRVFSYMLSTGFEPD 164
           N+ Y +A+++F  L  +  F+  + T+  +I AC G   R + EV  +   ++  G   D
Sbjct: 8   NELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEV--IHGMVIKMGLLLD 65

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW- 223
           +++ N ++ M+ + G +  A ++F  MP RNLVS N II+G  ++G   + F + +++  
Sbjct: 66  VFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMA 125

Query: 224 -EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
            EE       T  T++   A    + +G ++H  A+K+G  ++V V+ +L+DMYSKCG +
Sbjct: 126 GEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYL 185

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR-DSGVKMDHFTFSMIIRI 341
            +AQ +FD+ + K  V WNT+I G    GY  EA +L+ EM+    ++++  T   I+  
Sbjct: 186 TEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPA 245

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C  ++ L   K+ H   +RHGF  D +  +  V  Y+K G +  A  VF  M  K V SW
Sbjct: 246 CLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSW 305

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS-----RSGLSERGWEIF 456
           NALI G   +G   +A+ L+ QM  +G+ P+  T  ++L A +     R G    G+ + 
Sbjct: 306 NALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLR 365

Query: 457 QSMSRDHKI-------------------------KPRAMHYACMIELLGREGLLDEAFAL 491
             +  D  I                         +  ++ +  MI    + GL ++A  L
Sbjct: 366 HGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALIL 425

Query: 492 IR---GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV---LLNIY 545
            R      F+ +     ++L AC     L LGK      Y ++   + +  V    +++Y
Sbjct: 426 FRKLVSDGFQPSDIAVVSVLGACSQQSALRLGK--ETHCYALKALLMEDVFVACSTIDMY 483

Query: 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM- 604
             SG +KE+  V   L+ K L      SW  +     V   G++S ++  E  RKV +M 
Sbjct: 484 AKSGCIKESRSVFDGLKNKDL-----ASWNAIIAAYGVHGDGEES-IELFERMRKVGQMP 537

Query: 605 -------MLEISKHGYVPEE 617
                  +L +  H  + EE
Sbjct: 538 DGFTFIGILTVCSHAGLVEE 557


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/606 (37%), Positives = 360/606 (59%), Gaps = 12/606 (1%)

Query: 100 QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           Q++   L       + L  +L  +G    G+S +   I AC+      + K     +L T
Sbjct: 218 QMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGT 277

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
                      +L M+ +CG ++ ARR+FD MP RN V+ + +I G +      +AFLLF
Sbjct: 278 A----------LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLF 327

Query: 220 LD-LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
              L +        + A+ +RA A L+ + +G+QLH+   K G   ++    +L+ MY+K
Sbjct: 328 KAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK 387

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            G I+ A  +FDEM+ K TV ++ +++GY  +G +EEA  ++ +M+   V+ D  T   +
Sbjct: 388 AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSL 447

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           I  C+ LA+L+H + +H  ++  G   +    +AL+D Y+K GRI+ +R VF+ M  +++
Sbjct: 448 IPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDI 507

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SWN +IAGYG HG G+EA  LF +M   G  P+ VTF+ +LSACS SGL   G   F  
Sbjct: 508 VSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHV 567

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M   + + PR  HY CM++LL R G LDEA+  I+  P +    +W ALL ACRV  N++
Sbjct: 568 MRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNID 627

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           LGK  +  +  + PE   N+V+L NIY+++G+  EAAEV    + +G +  P CSWIE+ 
Sbjct: 628 LGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 687

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSE 637
              H F+ GDQSH Q+ EIYR++D +++ I K GY P+   +L D+ +E++++ L  HSE
Sbjct: 688 GSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSE 747

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+A+G+++ S+   + + ++ R+C DCH  IK I+++  R I+VRDA+RFHHFK+G C
Sbjct: 748 KLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQC 807

Query: 698 SCGDYW 703
           SCGD+W
Sbjct: 808 SCGDFW 813



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 137/531 (25%), Positives = 243/531 (45%), Gaps = 64/531 (12%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+   + AC  L      + +  + +  G + DL++   +L M+V+C  + DA  +F  M
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC--GSRTFATMIRASAGLELISV 249
           P R+LV+ N ++AG    G Y  A    L +  +       + T   ++   A    ++ 
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 250 GKQLHSCAL----------KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
           G  +H+  +          K    D V +  AL+DMY+KCGS+  A+ VFD M  +  V 
Sbjct: 247 GTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 306

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGV-KMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
           W+ +I G+ L     +A  L+  M   G+  +   + +  +R C  L  L   +Q HA L
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALL 366

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
            + G   D+ A ++L+  Y+K G I+ A  +FD+M  K+ +S++AL++GY  +GR EEA 
Sbjct: 367 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAF 426

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACS-----RSGLSERGWEIFQSMSRDHKIKPRA--MH 471
            +F++M    + P+  T ++++ ACS     + G    G  I + ++ +  I      M+
Sbjct: 427 LVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMY 486

Query: 472 YAC-----------------------MIELLGREGLLDEAFAL---IRGAPFKTTKNMWA 505
             C                       MI   G  GL  EA AL   +    F      + 
Sbjct: 487 AKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFI 546

Query: 506 ALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
            LL+AC  +G +  GK     +   YG+ P ++ +Y+ ++++ +  G L EA E I+++ 
Sbjct: 547 CLLSACSHSGLVIEGKHWFHVMRHGYGLTP-RMEHYICMVDLLSRGGFLDEAYEFIQSMP 605

Query: 563 -RKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
            R  +R+     W+ +     V+        +  ++ +KV RM+ E+   G
Sbjct: 606 LRADVRV-----WVALLGACRVY--------KNIDLGKKVSRMIQELGPEG 643



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 173/378 (45%), Gaps = 23/378 (6%)

Query: 175 HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA--FLLFLDLWEEFSDCGSR 232
           H+  G +  A  LFD++P  ++ + N +I     S     A    L+  +        + 
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           TF   ++A + L     G+ +H  A+  G   ++FVS AL+DMY KC  + DA  +F  M
Sbjct: 127 TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 186

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALD--LYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
             +  V WN ++AGYA HG    A+   L  +M+   ++ +  T   ++ +  +  +L  
Sbjct: 187 PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 246

Query: 351 AKQAHAGLVRHGFGLD----------IVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
               HA  +R     +          ++  +AL+D Y+K G +  AR VFD M  +N ++
Sbjct: 247 GTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 306

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNG---MRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           W+ALI G+    R  +A  LF+ ML  G   + P  +   + L AC+       G ++  
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQLHA 364

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
            +++   +         ++ +  + GL+D+A AL      K T + ++AL++    NG  
Sbjct: 365 LLAKS-GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVS-YSALVSGYVQNGRA 422

Query: 518 ELGKFAAEKLYG--MEPE 533
           E      +K+    +EP+
Sbjct: 423 EEAFLVFKKMQACNVEPD 440


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/640 (35%), Positives = 369/640 (57%), Gaps = 38/640 (5%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I+    +++  EA EL+E +  + G    + T+ +L+++C    ++   +R+ S++   G
Sbjct: 252 IQANAQHRKLNEAFELYEKM-LQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERG 310

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG-----DYLEA 215
            E D+ + N ++ M+ +C  + DAR  FD M +R+++S + +IAG   SG        E 
Sbjct: 311 LETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEV 370

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
           F L   +  E       TF ++++A +    +  G+Q+H+   K+GF  +  +  A+ +M
Sbjct: 371 FQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNM 430

Query: 276 YSKCGSIEDAQ-------------------------------GVFDEMSEKTTVGWNTII 304
           Y+KCGSI +A+                                VF EMS +  V WN +I
Sbjct: 431 YAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMI 490

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           AGYA  G   +  +L   M+  G + D  T   I+  C  L++LE  K  HA  V+ G  
Sbjct: 491 AGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLE 550

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D V  ++L+  YSK G + +AR VFDK+  ++ ++WNA++AGYG HG G EAV+LF++M
Sbjct: 551 SDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRM 610

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
           L   + PN +TF AV+SAC R+GL + G EIF+ M  D ++KP   HY CM++LLGR G 
Sbjct: 611 LKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGR 670

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L EA   I+  P +   ++W ALL AC+ + N++L ++AA  +  +EP   S YV L NI
Sbjct: 671 LQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNI 730

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           Y  +G+  ++ +V + +  KGL+     S IE+  + H F++ D +H +   I+ +++ +
Sbjct: 731 YAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAELEML 790

Query: 605 MLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
             E+ + GY P+ + +L DVDE Q++R L +HSEKLA+A+GL+ T   TP++I+++ R+C
Sbjct: 791 TKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPPGTPIRIMKNLRVC 850

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCH A K I+ +  REIV RDA+RFH+FK+G CSCGD+W
Sbjct: 851 GDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 135/485 (27%), Positives = 244/485 (50%), Gaps = 13/485 (2%)

Query: 89  QMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIRE 148
           ++  P +    ++ +L    R +EA++L  I++ + G  V S+TY  +I  C  LR   +
Sbjct: 38  ELAGPRSVSGGEVWRLCKAGRLKEAIQLLGIIK-QRGLLVNSNTYGCIIEHCAKLRRFED 96

Query: 149 VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
            K V   +   G   D+Y+ N ++  + + G +    ++F  M  R++V+ + +IA    
Sbjct: 97  GKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAG 156

Query: 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
           +    +AF  F  + +   +    TF ++++A     ++   +++H+     G   +V V
Sbjct: 157 NNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAV 216

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
           + ALI MYSKCG I  A  +F +M E+  V W  II   A H    EA +LY +M  +G+
Sbjct: 217 ATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGI 276

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
             +  TF  ++  C    +L   ++ H+ +   G   D+V  +AL+  Y K   I+DAR 
Sbjct: 277 SPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARE 336

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRG-----EEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
            FD+M  ++VISW+A+IAGY   G       +E  +L E+M   G+ PN VTF+++L AC
Sbjct: 337 TFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKAC 396

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S  G  E+G +I   +S+      R++  A +  +  + G + EA  +      K     
Sbjct: 397 SVHGALEQGRQIHAEISKVGFESDRSLQTA-IFNMYAKCGSIYEAEQVFSKMENKNVV-A 454

Query: 504 WAALLTACRVNGNLELGKFAAEKLYG-MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           WA+LLT     G+L     +AEK++  M    + ++ +++  Y  SG + +  E++ +++
Sbjct: 455 WASLLTMYIKCGDLT----SAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMK 510

Query: 563 RKGLR 567
            +G +
Sbjct: 511 VEGFQ 515


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 243/671 (36%), Positives = 385/671 (57%), Gaps = 37/671 (5%)

Query: 67  KPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKR---YREALELFEILEFE 123
           +P P   K     L   + P  +   PS    S ++ L    R   +REA+  +  +   
Sbjct: 29  QPPPSIQKPTASPLTSKTPP--KPTSPSRSTASWVDALRSRTRSNDFREAISTYIEMTVS 86

Query: 124 GGFDVGSSTYDALISACIGLRSIREVKRV------FSYMLST---------------GFE 162
           G     +  + A++ A  GL+ ++  +++      F Y  S+               G  
Sbjct: 87  GA-RPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIG 145

Query: 163 PDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL 222
              +  N ++ M+ + G + D++ LF+   +R++VS N +I+    S  + EA   F  +
Sbjct: 146 DKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLM 205

Query: 223 WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG-FGDNVFVSCALIDMYSKCGS 281
             E  +    T A+++ A + LE + VGK++H+  L+     +N FV  AL+DMY  C  
Sbjct: 206 VLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQ 265

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIR 340
           +E  + VFD +  +    WN +I+GYA +G  E+AL L+ EM + +G+  +  T + ++ 
Sbjct: 266 VESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMP 325

Query: 341 ICTR-LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
            C   LA++   K+ HA  +R+    DI   SALVD Y+K G +  +R VF++M  KNVI
Sbjct: 326 ACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVI 385

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMR-----PNHVTFLAVLSACSRSGLSERGWE 454
           +WN LI   G HG+GEEA+ELF+ M+    R     PN VTF+ V +ACS SGL   G  
Sbjct: 386 TWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLN 445

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK-NMWAALLTACRV 513
           +F  M  DH ++P + HYAC+++LLGR G L+EA+ L+   P +  K   W++LL ACR+
Sbjct: 446 LFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRI 505

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACS 573
           + N+ELG+ AA+ L  +EP   S+YV+L NIY+S+G   +A EV + +R+ G++  P CS
Sbjct: 506 HQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCS 565

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVL 632
           WIE + + H F++GD SH Q+++++  ++ +  ++ K GYVP+   +L +VDE E + +L
Sbjct: 566 WIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLL 625

Query: 633 SYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHF 692
             HSEKLA+AFG++NT   T +++ ++ R+C DCH A K I+ +  REI+VRD  RFHHF
Sbjct: 626 CGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHF 685

Query: 693 KDGMCSCGDYW 703
           K+G CSCGDYW
Sbjct: 686 KEGTCSCGDYW 696


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/555 (40%), Positives = 340/555 (61%), Gaps = 2/555 (0%)

Query: 151  RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG 210
            +V  Y +  G   D ++   ++ ++ + G M +A  L     + +L S N I+ G I S 
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSN 1078

Query: 211  DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC 270
               +A   F  + E        T AT I+AS  L  +  GKQ+ + A+K+GF ++++VS 
Sbjct: 1079 KSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSS 1138

Query: 271  ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
             ++DMY KCG + +A  +F E+S    V W T+I+GY  +G  + AL +Y+ MR SGV+ 
Sbjct: 1139 GVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQP 1198

Query: 331  DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
            D +TF+ +I+  + L +LE  KQ HA +V+  + LD    ++LVD Y K G ++DA  VF
Sbjct: 1199 DEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVF 1258

Query: 391  DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
             KM  + V+ WNA++ G   HG  +EA+ LF  M  NG++P+ VTF+ VLSACS SGL  
Sbjct: 1259 RKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFS 1318

Query: 451  RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
              ++ F +M + + I P   HY+C+++ LGR G + EA  +I   PFK + +M+ ALL A
Sbjct: 1319 EAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGA 1378

Query: 511  CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLP 570
            CR  G+ E  K  A+KL  ++P   S YV+L NIY +S +  +  +    ++ K ++  P
Sbjct: 1379 CRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDP 1438

Query: 571  ACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG-YVPEEKTLLPDVDEQE- 628
              SWI+VK + H+F+  D+SH Q   IY K++ +M  I + G YVP+    L DV+E+E 
Sbjct: 1439 GFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEK 1498

Query: 629  QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
            +R L YHSEKLA+AFGLI+T     ++++++ R+C DCH+AIK I+ +T REIV+RDA+R
Sbjct: 1499 ERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANR 1558

Query: 689  FHHFKDGMCSCGDYW 703
            FHHF++G CSCGDYW
Sbjct: 1559 FHHFRNGTCSCGDYW 1573



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 184/344 (53%), Gaps = 4/344 (1%)

Query: 105  VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
            + + + R+ALE F ++  E G  +   T    I A   L ++++ K++ +Y +  GF  D
Sbjct: 1075 IKSNKSRKALEHFSLMH-EMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNND 1133

Query: 165  LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
            L++ + VL M+++CG M +A  LF E+   + V+   +I+G I++GD   A  ++  +  
Sbjct: 1134 LWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRV 1193

Query: 225  EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                    TFAT+I+AS+ L  +  GKQ+H+  +K+ +  + FV  +L+DMY KCGS++D
Sbjct: 1194 SGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQD 1253

Query: 285  AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
            A  VF +M  +  V WN ++ G A HG+ +EAL+L+  M+ +G++ D  TF  ++  C+ 
Sbjct: 1254 AYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSH 1313

Query: 345  LASLEHA-KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WN 402
                  A K   A    +G   +I   S LVD   + GRI++A +V   M  K   S + 
Sbjct: 1314 SGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYR 1373

Query: 403  ALIAGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLSACSR 445
            AL+      G  E A  + +++L L+    +    L+ + A SR
Sbjct: 1374 ALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASR 1417



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 142/308 (46%), Gaps = 13/308 (4%)

Query: 148  EVKRVFSYMLSTGFEPDLY--------MRNRVLLMHVRCGMMIDA--RRLFDEMPERNLV 197
            E  R FS    +GF PD          + + V     R    + A   ++F      N+ 
Sbjct: 801  EALRFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIF 860

Query: 198  SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257
            + N  +   + +G  + A   F  L        S T   ++ A+ G + + +G+Q+H+  
Sbjct: 861  AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALV 920

Query: 258  LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL 317
            +K  F   V VS +L++MYSK G +  A+  F    E   + WNT+I+ YA +    EA+
Sbjct: 921  IKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAI 980

Query: 318  DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH---AKQAHAGLVRHGFGLDIVANSALV 374
              + ++   G+K D FT + ++R C+     E+     Q H   ++ G   D   ++AL+
Sbjct: 981  CTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALI 1040

Query: 375  DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
            D YSK G++++A  +       ++ SWNA++ GY    +  +A+E F  M   G+  + +
Sbjct: 1041 DLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEI 1100

Query: 435  TFLAVLSA 442
            T    + A
Sbjct: 1101 TLATAIKA 1108



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 113/469 (24%), Positives = 206/469 (43%), Gaps = 81/469 (17%)

Query: 139  ACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVS 198
            + I +  ++  KR  + ++++G  PD Y+ N ++ M+ +CG +  AR++FD+  +R+LV+
Sbjct: 620  SAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVT 679

Query: 199  CNMIIAGMIDSGD-----YLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQ 252
             N I+A      D      LE F LF  L  EF    +R T A +++       + V + 
Sbjct: 680  WNSILAAYAQFADSSYENVLEGFRLF-GLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 253  LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
            +H  A+K+GF  ++FVS AL+++Y K G +  A+ +FD+M E+  V WN ++  Y  + +
Sbjct: 739  VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 313  SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
             +EAL  +     SG   D      +I      + + + ++ HA  V+  + + +     
Sbjct: 799  QDEALRFFSAFHRSGFFPDFSNLHCVIGGVN--SDVSNNRKRHAEQVK-AYAMKMFP--- 852

Query: 373  LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
                             FD+    N+ +WN  +  + + G+   A++ F+ +L + +  +
Sbjct: 853  -----------------FDQ--GSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHD 893

Query: 433  HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
             VT + +LSA   +   + G +I                +A +I+          +F   
Sbjct: 894  SVTLVIILSAAVGADDLDLGEQI----------------HALVIK---------SSF--- 925

Query: 493  RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE-KLSNYVVLLNIYNSSGKL 551
              AP     N    + +   V        +AAEK +   PE  L ++  +++ Y  +   
Sbjct: 926  --APVVPVSNSLMNMYSKAGV-------VYAAEKTFINSPELDLISWNTMISSYAQNNLE 976

Query: 552  KEAAEVIRTLRRKGLR--------MLPACSWIEVKKQPHVFLSGDQSHV 592
             EA    R L R GL+        +L ACS      +   F  G Q HV
Sbjct: 977  MEAICTFRDLLRDGLKPDQFTLASVLRACS---TGDEGEYFTLGSQVHV 1022



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 108/199 (54%), Gaps = 5/199 (2%)

Query: 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV 298
           R++  +  + +GK+ H+  +  G   + +++  LI MYSKCGS+  A+ VFD+ S++  V
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 299 GWNTIIAGYALHGYSE-----EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
            WN+I+A YA    S      E   L+  +R+ G  +   T + ++++C     ++ ++ 
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            H   V+ GF LD+  + ALV+ Y K+G +  AR +FDKM  ++ + WN ++  Y  +  
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 414 GEEAVELFEQMLLNGMRPN 432
            +EA+  F     +G  P+
Sbjct: 799 QDEALRFFSAFHRSGFFPD 817



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 169/389 (43%), Gaps = 36/389 (9%)

Query: 112  EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
            E   LF +L  E GF +   T   L+  C+    ++  + V  Y +  GFE DL++   +
Sbjct: 700  EGFRLFGLLR-EFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGAL 758

Query: 172  LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
            + ++ + G++  AR LFD+MPER+ V  N+++   +++                F D   
Sbjct: 759  VNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVEN---------------SFQDEAL 803

Query: 232  RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            R F+   R+    +       LH C +    G N  VS        +  +       FD+
Sbjct: 804  RFFSAFHRSGFFPDF----SNLH-CVIG---GVNSDVSNNRKRHAEQVKAYAMKMFPFDQ 855

Query: 292  MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
             S      WN  +  +   G    A+D +  +  S +  D  T  +I+        L+  
Sbjct: 856  GS--NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLG 913

Query: 352  KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
            +Q HA +++  F   +  +++L++ YSK G +  A   F      ++ISWN +I+ Y  +
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQN 973

Query: 412  GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH------KI 465
                EA+  F  +L +G++P+  T  +VL ACS     + G E F   S+ H       I
Sbjct: 974  NLEMEAICTFRDLLRDGLKPDQFTLASVLRACS---TGDEG-EYFTLGSQVHVYAIKCGI 1029

Query: 466  KPRAMHYACMIELLGREGLLDEAFALIRG 494
               +     +I+L  + G +DEA  L+ G
Sbjct: 1030 INDSFVSTALIDLYSKGGKMDEAEFLLHG 1058


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/572 (36%), Positives = 349/572 (61%), Gaps = 2/572 (0%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y ++I+AC   +++   + + +++  +    D ++ N ++ M+ +CG + DAR +FD+MP
Sbjct: 63  YHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMP 122

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
            R++VS   +IAG   +    EA  L  D+          TF ++++A+      S+G+Q
Sbjct: 123 SRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQ 182

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H+ A+K  + ++V+V  AL+DMY++C  ++ A  VFD +  K  V WN +IAG+A    
Sbjct: 183 MHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKAD 242

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            E  L  + EM+ +G    HFT+S +     R+ +LE  +  HA L++ G  L     + 
Sbjct: 243 GETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNT 302

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           ++  Y+K G + DAR VFD+M  +++++WN ++     +G G+EAV  FE++   G++ N
Sbjct: 303 MLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLN 362

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            +TFL+VL+ACS  GL + G   F  M +D+ ++P   HY   ++LLGR GLL EA   +
Sbjct: 363 QITFLSVLTACSHGGLVKEGKHYFD-MMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFV 421

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
              P + T  +W ALL ACR++ N ++G++AA+ ++ ++P+     V+L NIY S+GK  
Sbjct: 422 FKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWN 481

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
           +AA V + ++  G++  PACSW++++   H+F++ D +H ++ +IYR  + + + I K G
Sbjct: 482 DAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAG 541

Query: 613 YVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           YVP    +L  ++EQE+   L YHSEK+A+AF LIN      ++I+++ RIC DCH+A K
Sbjct: 542 YVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDCHSAFK 601

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++ V  REIVVRD +RFHHF +G CSCGDYW
Sbjct: 602 YVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 175/358 (48%), Gaps = 36/358 (10%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           R + ++I A A  + ++  + +H+   +     + F+  +LI MY KCG++ DA+ VFD+
Sbjct: 61  RLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDK 120

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M  +  V W  +IAGYA +    EA+ L  +M  +  + + FTF+ +++           
Sbjct: 121 MPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIG 180

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           +Q HA  V++ +  D+   SAL+D Y++  +++ A  VFD+++ KN +SWNALIAG+   
Sbjct: 181 EQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARK 240

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR---------- 461
             GE  +  F +M  NG    H T+ ++ SA +R G  E+G  +   + +          
Sbjct: 241 ADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVG 300

Query: 462 --------------------DHKIKPRAMHYACMIELLGREGLLDEA---FALIRGAPFK 498
                               D   K   + +  M+  L + GL  EA   F  IR    +
Sbjct: 301 NTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQ 360

Query: 499 TTKNMWAALLTACRVNGNLELGK--FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
             +  + ++LTAC   G ++ GK  F   K Y ++PE + +YV  +++   +G LKEA
Sbjct: 361 LNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPE-IDHYVSFVDLLGRAGLLKEA 417



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 9/191 (4%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           GF     TY ++ SA   + ++ + + V ++++ +G +   ++ N +L M+ + G M+DA
Sbjct: 257 GFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDA 316

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRA 240
           R++FD M +R+LV+ N ++  +   G   EA   F    EE   CG +    TF +++ A
Sbjct: 317 RKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHF----EEIRKCGIQLNQITFLSVLTA 372

Query: 241 SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ-GVFDEMSEKTTVG 299
            +   L+  GK              +    + +D+  + G +++A   VF    E T   
Sbjct: 373 CSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAV 432

Query: 300 WNTIIAGYALH 310
           W  ++    +H
Sbjct: 433 WGALLGACRMH 443


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 242/697 (34%), Positives = 378/697 (54%), Gaps = 78/697 (11%)

Query: 79  ELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALIS 138
           +L   S+PD  +   S    S I  L   K + +++ +F  + F  G    S     L  
Sbjct: 70  DLVLQSIPDPTIYSFS----SLIYALTKAKLFTQSIGVFSRM-FSHGLIPDSHVLPNLFK 124

Query: 139 ACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVS 198
            C  L + +  K++      +G + D +++  +  M++RCG M DAR++FD M ++++V+
Sbjct: 125 VCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVT 184

Query: 199 C-----------------------------------NMIIAGMIDSGDYLEAFLLFLDLW 223
           C                                   N I++G   SG + EA ++F  + 
Sbjct: 185 CSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKI- 243

Query: 224 EEFSDCGSRTFATMIRASAG-LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
                C  +   + +  S G  E++++G+ +H   +K G   +  V  A+IDMY K G +
Sbjct: 244 HHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHV 303

Query: 283 -------------------------------EDAQGVFDEMSEKT----TVGWNTIIAGY 307
                                          + A  +F+   E+T     V W +IIAG 
Sbjct: 304 YGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGC 363

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           A +G   EAL+L+ EM+ +GVK +H T   ++  C  +A+L H +  H   VR     ++
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNV 423

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              SAL+D Y+K GRI  ++ VF+ M  KN++ WN+L+ G+  HG+ +E + +FE ++  
Sbjct: 424 HVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRT 483

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
            ++P+ ++F ++LSAC + GL++ GW+ F+ MS ++ IKPR  HY+CM+ LLGR G L E
Sbjct: 484 RLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQE 543

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A+ LI+  PF+    +W ALL +CR+  N++L + AAEKL+ +EPE    YV+L NIY +
Sbjct: 544 AYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAA 603

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
            G   E   +   +   GL+  P CSWI+VK + +  L+GD+SH Q  +I  K+D +  E
Sbjct: 604 KGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKE 663

Query: 608 ISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
           + K G+ P     L DV+EQEQ ++L  HSEKLAV FGL+NT D TPLQ++++ RIC DC
Sbjct: 664 MRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDC 723

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           H  IK I+   GREI +RD +RFHHFKDG+CSCGD+W
Sbjct: 724 HAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 111/517 (21%), Positives = 208/517 (40%), Gaps = 117/517 (22%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           +L +G + D Y+  +++  +       DA  +   +P+  + S + +I  +  +  + ++
Sbjct: 41  ILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLFTQS 100

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
             +F  ++       S     + +  A L    VGKQ+H  +   G   + FV  ++  M
Sbjct: 101 IGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHM 160

Query: 276 YSKCGSIEDAQGVFDEMSEK-----------------------------------TTVGW 300
           Y +CG + DA+ VFD MS+K                                     V W
Sbjct: 161 YMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSW 220

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           N I++G+   GY +EA+ ++ ++   G   D  T S ++        L   +  H  +++
Sbjct: 221 NGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIK 280

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM------LCK------------------ 396
            G   D    SA++D Y K G +     +F++       +C                   
Sbjct: 281 QGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEM 340

Query: 397 -----------NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
                      NV+SW ++IAG   +G+  EA+ELF +M + G++PNHVT  ++L AC  
Sbjct: 341 FELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGN 400

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM-- 503
                 G        R H +    +  A +I++  + G ++ +  +    P   TKN+  
Sbjct: 401 IAALGHGRSTHGFAVRVHLLDNVHVGSA-LIDMYAKCGRINLSQIVFNMMP---TKNLVC 456

Query: 504 -----------------------------------WAALLTACRVNGNLELG----KFAA 524
                                              + +LL+AC   G  + G    K  +
Sbjct: 457 WNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMS 516

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           E+ YG++P +L +Y  ++N+   +GKL+EA ++I+ +
Sbjct: 517 EE-YGIKP-RLEHYSCMVNLLGRAGKLQEAYDLIKEM 551



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 100/208 (48%)

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           Q H+  LK G  ++ ++S  LI  YS      DA  V   + + T   ++++I       
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
              +++ ++  M   G+  D      + ++C  L++ +  KQ H      G  +D     
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           ++   Y + GR+ DAR VFD+M  K+V++ +AL+  Y   G  EE V +  +M  +G+  
Sbjct: 156 SMFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEA 215

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSM 459
           N V++  +LS  +RSG  +    +FQ +
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKI 243


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/648 (36%), Positives = 370/648 (57%), Gaps = 41/648 (6%)

Query: 90  MKKPSAGICSQIEKLVLNKRYREALELF--EILEFEGGFDVGSSTYDALISACIGLRSIR 147
           MK  S+    +   L  + R ++A + F  EI           S +  L+ +CI L S+ 
Sbjct: 27  MKISSSASLQEFTSLCNDGRIKQAYDTFTSEIWS-------DPSLFSHLLQSCIKLGSLF 79

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
             K+V S ++++G   D ++ N +L  + + G    +  LF  MP RN++S N++I G +
Sbjct: 80  GGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYL 139

Query: 208 DSGDYLEAFLLF---------------------------LDLWEEFSDCG----SRTFAT 236
             GD   A  LF                           L L++E    G      T  +
Sbjct: 140 QLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGS 199

Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
           ++R  AGL  +  G+++H+C LK GF  +  V  +L  MY K GS+ D + +   M  +T
Sbjct: 200 VLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRT 259

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
            V WNT+IAG A +G  EE L+ Y  M+ +G + D  TF  ++  C+ LA+L   +Q HA
Sbjct: 260 VVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHA 319

Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
            +++ G    +   S+L+  YS+ G +ED+   F      +V+ W+++IA YG HGRGEE
Sbjct: 320 EVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEE 379

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
           A+ELF QM    M  N VTFL++L ACS SGL E+G E F  M + +K+KPR  HY C++
Sbjct: 380 ALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVV 439

Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
           +LLGR G L+EA  +IR  P +    +W  LL AC+++   E+ +  +E++  ++P   +
Sbjct: 440 DLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAA 499

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKE 596
           +YV+L NI+ S+      +++ + +R + +R  P  SW+E+K   H F  GD+SH Q  E
Sbjct: 500 SYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFE 559

Query: 597 IYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQ 655
           I   +  +M E+ +HGYVPE  ++L D+D +E+   L++HSEK A+AF L+NTS+  P++
Sbjct: 560 IDLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIR 619

Query: 656 IVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++++ R+C DCHNAIK I+ +  REI+VRDASRFHHFKDG CSCG+YW
Sbjct: 620 VMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGNYW 667


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/591 (38%), Positives = 353/591 (59%), Gaps = 6/591 (1%)

Query: 119 ILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC 178
           +++ +      SST   ++ A   + S+R  K +  + +  GF  D+ +   +L ++ +C
Sbjct: 209 LVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKC 268

Query: 179 GMMIDARRLFDEMP-ERNLVSCNMIIAGMIDSG---DYLEAFLLFLDLWEEFSDCGSRTF 234
             +  ARR+FD M   +N V+ + ++   +      + LE F   L L ++     + T 
Sbjct: 269 QCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTL 328

Query: 235 ATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE 294
           AT+IR  A L  +S G  LH  A+K GF  ++ V   L+ MY+KCG I  A   F+EM  
Sbjct: 329 ATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDL 388

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
           +  V +  II+GY  +G SEE L ++ EM+ SG+  +  T + ++  C  LA L +   +
Sbjct: 389 RDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCS 448

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414
           H   +  GF  D +  +AL+D Y+K G+I+ AR VFD+M  + ++SWN +I  YG HG G
Sbjct: 449 HCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIG 508

Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474
            EA+ LF+ M   G++P+ VTF+ ++SACS SGL   G   F +M++D  I PR  HYAC
Sbjct: 509 LEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYAC 568

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534
           M++LL R GL  E  + I   P +    +W ALL+ACRV  N+ELG+  ++K+  + PE 
Sbjct: 569 MVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPES 628

Query: 535 LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD-QSHVQ 593
             N+V+L N+Y++ G+  +AA+V  T + +G    P CSWIE+    H FL G  +SH Q
Sbjct: 629 TGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQ 688

Query: 594 TKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWT 652
             +I  K+D +++E+ + GY  E   +  DV+E+E +RVL YHSEKLA+AFG+++ S   
Sbjct: 689 LTQISNKLDELLVEMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPDK 748

Query: 653 PLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            + + ++ R+C DCH AIK I++VT R+I VRDASRFHHFKDG+C+CGD+W
Sbjct: 749 HIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 124/505 (24%), Positives = 239/505 (47%), Gaps = 50/505 (9%)

Query: 101 IEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           I     N  Y EA++L+ ++L +  G      T+  ++ AC  L+   E + +   +   
Sbjct: 91  IRAYAWNGPYEEAIDLYYKMLGY--GITPNRFTFPFVLKACSALKEASEGREIHCDIKRL 148

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM-IDSGDYLEAFLL 218
             E ++Y+   ++  + +CG + DA+ +FD+M +R++V+ N +I+G  +  G Y E   L
Sbjct: 149 RLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARL 208

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
            + +  + S   S T   ++ A A +  +  GK++H   ++ GF  +V V   ++D+Y K
Sbjct: 209 LVQMQNDVSP-NSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGK 267

Query: 279 CGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALDLYYE---MRDSGVKMDHFT 334
           C  I+ A+ +FD M   K  V W+ ++  Y +  +  EAL+L+ +   ++D  + +   T
Sbjct: 268 CQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIVLSAVT 327

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
            + +IR+C  L  L      H   ++ GF LD++  + L+  Y+K G I  A   F++M 
Sbjct: 328 LATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMD 387

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC----------- 443
            ++ +S+ A+I+GY  +G  EE + +F +M L+G+ P   T  +VL AC           
Sbjct: 388 LRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSC 447

Query: 444 ------------------------SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479
                                   ++ G  +   ++F  M +   +    M  A  I  +
Sbjct: 448 SHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGI 507

Query: 480 GREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF---AAEKLYGMEPEKLS 536
           G E LL   F  ++    K     +  L++AC  +G +  GK+   A  + +G+ P ++ 
Sbjct: 508 GLEALL--LFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIP-RME 564

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTL 561
           +Y  ++++ + +G  KE    I  +
Sbjct: 565 HYACMVDLLSRAGLFKEVHSFIEKM 589



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/431 (27%), Positives = 213/431 (49%), Gaps = 35/431 (8%)

Query: 135 ALISACIGLRSIREVKRVFSYMLS----------TGFEPDLYMRNRVLLMHVRCGMMIDA 184
            L+ +CI  +S+   K +  ++L           T F+       +++ +++ C  +  A
Sbjct: 14  VLLESCIQSKSLFRGKLIHQHLLKCLHRTHETNLTNFDVPF---EKLVDLYIACSELKIA 70

Query: 185 RRLFDEMPER--NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
           R +FD+MP R  N+V  N++I     +G Y EA  L+  +          TF  +++A +
Sbjct: 71  RHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKACS 130

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
            L+  S G+++H    ++    NV+VS AL+D Y+KCG ++DA+ VFD+M ++  V WN+
Sbjct: 131 ALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNS 190

Query: 303 IIAGYALH-GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           +I+G++LH G  +E   L  +M++  V  +  T   ++    ++ SL H K+ H   VR 
Sbjct: 191 MISGFSLHEGSYDEVARLLVQMQND-VSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRR 249

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVEL 420
           GF  D+V  + ++D Y K   I+ AR +FD M + KN ++W+A++  Y       EA+EL
Sbjct: 250 GFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALEL 309

Query: 421 FEQMLL---NGMRPNHVTFLAVLSACSR-----SGLSERGWEIFQSMSRDHKIKPRAMHY 472
           F Q+L+   + +  + VT   V+  C+      +G     + I      D  +       
Sbjct: 310 FCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNT---- 365

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG--KFAAEKLYGM 530
             ++ +  + G+++ A         +   + + A+++    NGN E G   F   +L G+
Sbjct: 366 --LLSMYAKCGIINGAMRFFNEMDLRDAVS-FTAIISGYVQNGNSEEGLRMFLEMQLSGI 422

Query: 531 EPEKLSNYVVL 541
            PEK +   VL
Sbjct: 423 NPEKATLASVL 433


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/555 (40%), Positives = 340/555 (61%), Gaps = 2/555 (0%)

Query: 151  RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG 210
            +V  Y +  G   D ++   ++ ++ + G M +A  L     + +L S N I+ G I S 
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSN 1078

Query: 211  DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC 270
               +A   F  + E        T AT I+AS  L  +  GKQ+ + A+K+GF ++++VS 
Sbjct: 1079 KSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSS 1138

Query: 271  ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
             ++DMY KCG + +A  +F E+S    V W T+I+GY  +G  + AL +Y+ MR SGV+ 
Sbjct: 1139 GVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQP 1198

Query: 331  DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
            D +TF+ +I+  + L +LE  KQ HA +V+  + LD    ++LVD Y K G ++DA  VF
Sbjct: 1199 DEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVF 1258

Query: 391  DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
             KM  + V+ WNA++ G   HG  +EA+ LF  M  NG++P+ VTF+ VLSACS SGL  
Sbjct: 1259 RKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFS 1318

Query: 451  RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
              ++ F +M + + I P   HY+C+++ LGR G + EA  +I   PFK + +M+ ALL A
Sbjct: 1319 EAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGA 1378

Query: 511  CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLP 570
            CR  G+ E  K  A+KL  ++P   S YV+L NIY +S +  +  +    ++ K ++  P
Sbjct: 1379 CRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDP 1438

Query: 571  ACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG-YVPEEKTLLPDVDEQE- 628
              SWI+VK + H+F+  D+SH Q   IY K++ +M  I + G YVP+    L DV+E+E 
Sbjct: 1439 GFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEK 1498

Query: 629  QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
            +R L YHSEKLA+AFGLI+T     ++++++ R+C DCH+AIK I+ +T REIV+RDA+R
Sbjct: 1499 ERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANR 1558

Query: 689  FHHFKDGMCSCGDYW 703
            FHHF++G CSCGDYW
Sbjct: 1559 FHHFRNGTCSCGDYW 1573



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 184/344 (53%), Gaps = 4/344 (1%)

Query: 105  VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
            + + + R+ALE F ++  E G  +   T    I A   L ++++ K++ +Y +  GF  D
Sbjct: 1075 IKSNKSRKALEHFSLMH-EMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNND 1133

Query: 165  LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
            L++ + VL M+++CG M +A  LF E+   + V+   +I+G I++GD   A  ++  +  
Sbjct: 1134 LWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRV 1193

Query: 225  EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                    TFAT+I+AS+ L  +  GKQ+H+  +K+ +  + FV  +L+DMY KCGS++D
Sbjct: 1194 SGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQD 1253

Query: 285  AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
            A  VF +M  +  V WN ++ G A HG+ +EAL+L+  M+ +G++ D  TF  ++  C+ 
Sbjct: 1254 AYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSH 1313

Query: 345  LASLEHA-KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WN 402
                  A K   A    +G   +I   S LVD   + GRI++A +V   M  K   S + 
Sbjct: 1314 SGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYR 1373

Query: 403  ALIAGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLSACSR 445
            AL+      G  E A  + +++L L+    +    L+ + A SR
Sbjct: 1374 ALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASR 1417



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 142/308 (46%), Gaps = 13/308 (4%)

Query: 148  EVKRVFSYMLSTGFEPDLY--------MRNRVLLMHVRCGMMIDAR--RLFDEMPERNLV 197
            E  R FS    +GF PD          + + V     R    + A   ++F      N+ 
Sbjct: 801  EALRFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIF 860

Query: 198  SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257
            + N  +   + +G  + A   F  L        S T   ++ A+ G + + +G+Q+H+  
Sbjct: 861  AWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALV 920

Query: 258  LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL 317
            +K  F   V VS +L++MYSK G +  A+  F    E   + WNT+I+ YA +    EA+
Sbjct: 921  IKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAI 980

Query: 318  DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH---AKQAHAGLVRHGFGLDIVANSALV 374
              + ++   G+K D FT + ++R C+     E+     Q H   ++ G   D   ++AL+
Sbjct: 981  CTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVSTALI 1040

Query: 375  DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
            D YSK G++++A  +       ++ SWNA++ GY    +  +A+E F  M   G+  + +
Sbjct: 1041 DLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPIDEI 1100

Query: 435  TFLAVLSA 442
            T    + A
Sbjct: 1101 TLATAIKA 1108



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 153/311 (49%), Gaps = 32/311 (10%)

Query: 139 ACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVS 198
           + I +  ++  KR  + ++++G  PD Y+ N ++ M+ +CG +  AR++FD+  +R+LV+
Sbjct: 620 SAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVT 679

Query: 199 CNMIIAGMIDSGD-----YLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQ 252
            N I+A      D      LE F LF  L  EF    +R T A +++       + V + 
Sbjct: 680 WNSILAAYAQFADSSYENVLEGFRLF-GLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H  A+K+GF  ++FVS AL+++Y K G +  A+ +FD+M E+  V WN ++  Y  + +
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            +EAL  +     SG   D      +I      + + + ++ HA  V+  + + +     
Sbjct: 799 QDEALRFFSAFHRSGFXPDFSNLHCVIGGVN--SDVSNNRKRHAEQVK-AYAMKMFP--- 852

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
                            FD+    N+ +WN  +  + + G+   A++ F+ +L + +  +
Sbjct: 853 -----------------FDQ--GSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHD 893

Query: 433 HVTFLAVLSAC 443
            VT + +LSA 
Sbjct: 894 SVTLVIILSAA 904



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 108/199 (54%), Gaps = 5/199 (2%)

Query: 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV 298
           R++  +  + +GK+ H+  +  G   + +++  LI MYSKCGS+  A+ VFD+ S++  V
Sbjct: 619 RSAIAMADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLV 678

Query: 299 GWNTIIAGYALHGYSE-----EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
            WN+I+A YA    S      E   L+  +R+ G  +   T + ++++C     ++ ++ 
Sbjct: 679 TWNSILAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET 738

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            H   V+ GF LD+  + ALV+ Y K+G +  AR +FDKM  ++ + WN ++  Y  +  
Sbjct: 739 VHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSF 798

Query: 414 GEEAVELFEQMLLNGMRPN 432
            +EA+  F     +G  P+
Sbjct: 799 QDEALRFFSAFHRSGFXPD 817



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 169/389 (43%), Gaps = 36/389 (9%)

Query: 112  EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
            E   LF +L  E GF +   T   L+  C+    ++  + V  Y +  GFE DL++   +
Sbjct: 700  EGFRLFGLLR-EFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGAL 758

Query: 172  LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
            + ++ + G++  AR LFD+MPER+ V  N+++   +++                F D   
Sbjct: 759  VNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVEN---------------SFQDEAL 803

Query: 232  RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            R F+   R+    +       LH C +    G N  VS        +  +       FD+
Sbjct: 804  RFFSAFHRSGFXPDF----SNLH-CVIG---GVNSDVSNNRKRHAEQVKAYAMKMFPFDQ 855

Query: 292  MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
             S      WN  +  +   G    A+D +  +  S +  D  T  +I+        L+  
Sbjct: 856  GS--NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLG 913

Query: 352  KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
            +Q HA +++  F   +  +++L++ YSK G +  A   F      ++ISWN +I+ Y  +
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQN 973

Query: 412  GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH------KI 465
                EA+  F  +L +G++P+  T  +VL ACS     + G E F   S+ H       I
Sbjct: 974  NLEMEAICTFRDLLRDGLKPDQFTLASVLRACS---TGDEG-EYFTLGSQVHVYAIKCGI 1029

Query: 466  KPRAMHYACMIELLGREGLLDEAFALIRG 494
               +     +I+L  + G +DEA  L+ G
Sbjct: 1030 INDSFVSTALIDLYSKGGKMDEAEFLLHG 1058


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/580 (37%), Positives = 352/580 (60%), Gaps = 2/580 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           GF+    T+ +++  C     + E K +   ++ +G  PD ++ N ++ ++ +CG    A
Sbjct: 186 GFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYA 245

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
            ++F E+PER++VS   +I G +  G Y     +F  +  E  +    TF +++R+ + L
Sbjct: 246 CKVFGEIPERDVVSWTALITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSL 304

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             + +GKQ+H+  +K     N FV  AL+DMY+K   +EDA+ +F+ + ++    W  I+
Sbjct: 305 SDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIV 364

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           AGYA  G  E+A+  + +M+  GVK + FT +  +  C+R+A+L+  +Q H+  ++ G  
Sbjct: 365 AGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQS 424

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D+   SALVD Y+K G +EDA  VFD ++ ++ +SWN +I GY  HG+G +A++ FE M
Sbjct: 425 GDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAM 484

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
           L  G  P+ VTF+ VLSACS  GL E G + F S+S+ + I P   HYACM+++LGR G 
Sbjct: 485 LDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGK 544

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
             E  + I      +   +W  +L AC+++GN+E G+ AA KL+ +EPE  SNY++L N+
Sbjct: 545 FHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNM 604

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           + + G   +   V   +  +G++  P CSW+EV  Q HVFLS D SH + +EI+ K+  +
Sbjct: 605 FAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDL 664

Query: 605 MLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
             ++   GY P    +L +V D ++Q +L YHSE+LA+AF L++TS    ++I ++ RIC
Sbjct: 665 HQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRIC 724

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCH+ +K I+ +T +E+VVRD + FHHFK+G CSC ++W
Sbjct: 725 GDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 119/489 (24%), Positives = 232/489 (47%), Gaps = 41/489 (8%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +EA++LF ++       +    + +LISA   L      + + + +   GFE D+ + N 
Sbjct: 72  QEAVQLFYLMR-HTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNA 130

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
            + M+++   + +  + F  M   NL S N +++G  D+    +   + + L  E  +  
Sbjct: 131 FVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPN 190

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             TF ++++  A    ++ GK +H   +K G   +  +  +L+++Y+KCGS   A  VF 
Sbjct: 191 MYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFG 250

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           E+ E+  V W  +I G+   GY    L ++ +M   G   + +TF  I+R C+ L+ ++ 
Sbjct: 251 EIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDL 309

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            KQ HA +V++    +    +ALVD Y+K   +EDA  +F++++ +++ +W  ++AGY  
Sbjct: 310 GKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQ 369

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
            G+GE+AV+ F QM   G++PN  T  + LS CSR    + G ++  SM+          
Sbjct: 370 DGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQL-HSMAIKAGQSGDMF 428

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKN---------------------------- 502
             + ++++  + G +++A  +  G   + T +                            
Sbjct: 429 VASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEG 488

Query: 503 ------MWAALLTACRVNGNLELGK---FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
                  +  +L+AC   G +E GK    +  K+YG+ P  + +Y  +++I   +GK  E
Sbjct: 489 TVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITP-TIEHYACMVDILGRAGKFHE 547

Query: 554 AAEVIRTLR 562
               I  ++
Sbjct: 548 VESFIEEMK 556



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 150/302 (49%), Gaps = 1/302 (0%)

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           LR+   +K++   ++  G  PD ++ + ++ ++V+C  +  AR++ +EMP +++   N  
Sbjct: 2   LRAKYILKKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQK 61

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           ++         EA  LF  +           FA++I A+A L     G+ +H+C  K GF
Sbjct: 62  LSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGF 121

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             ++ +S A + MY K  S+E+    F  M  +     N +++G+      ++   +  +
Sbjct: 122 ESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQ 181

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           +   G + + +TF  I++ C     L   K  H  +++ G   D    ++LV+ Y+K G 
Sbjct: 182 LLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGS 241

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
              A  VF ++  ++V+SW ALI G+   G G   + +F QML  G  PN  TF+++L +
Sbjct: 242 ANYACKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRS 300

Query: 443 CS 444
           CS
Sbjct: 301 CS 302



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 126/258 (48%), Gaps = 2/258 (0%)

Query: 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL 317
           +K G   +  +  +L+++Y KC S++ A+ V +EM  +    WN  ++        +EA+
Sbjct: 16  IKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAV 75

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
            L+Y MR + ++++ F F+ +I     L    + +  HA + ++GF  DI+ ++A V  Y
Sbjct: 76  QLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMY 135

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
            K   +E+    F  M+ +N+ S N L++G+ +    ++   +  Q+L+ G  PN  TF+
Sbjct: 136 MKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFI 195

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
           ++L  C+  G    G  I   + +   I P +  +  ++ +  + G  + A  +    P 
Sbjct: 196 SILKTCASKGDLNEGKAIHGQVIKS-GINPDSHLWNSLVNVYAKCGSANYACKVFGEIPE 254

Query: 498 KTTKNMWAALLTACRVNG 515
           +   + W AL+T     G
Sbjct: 255 RDVVS-WTALITGFVAEG 271



 Score = 42.4 bits (98), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 51/98 (52%)

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           ++++G   D    S+LV+ Y K   ++ AR V ++M  ++V  WN  ++   +    +EA
Sbjct: 15  VIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEA 74

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           V+LF  M    +R N   F +++SA +  G +  G  I
Sbjct: 75  VQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESI 112


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/640 (35%), Positives = 368/640 (57%), Gaps = 38/640 (5%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I+    +++  EA EL+E +  + G    + T+ +L+++C    ++   +R+ S++   G
Sbjct: 230 IQANAQHRKLNEAFELYEQM-LQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERG 288

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG-----DYLEA 215
            E D+ + N ++ M+ +C  + +AR +FD M +R+++S + +IAG   SG        E 
Sbjct: 289 LETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEV 348

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
           F L   +  E       TF +++RA      +  G+Q+H+   K+GF  +  +  A+ +M
Sbjct: 349 FQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNM 408

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGW-------------------------------NTII 304
           Y+KCGSI +A+ VF +M+ K  V W                               N +I
Sbjct: 409 YAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMI 468

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           AGYA +G   +  +L   M+  G + D  T   I+  C  LA LE  K  HA  V+ G  
Sbjct: 469 AGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLE 528

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D V  ++L+  YSK G++ +AR VFDKM  ++ ++WNA++AGYG HG G EAV+LF++M
Sbjct: 529 SDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDLFKRM 588

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
           L   + PN +T  AV+SACSR+GL + G EIF+ M  D K+ PR  HY CM++LLGR G 
Sbjct: 589 LKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGR 648

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L EA   I+  P +   ++W ALL AC+ + N++L + AA  +  +EP   S Y+ L NI
Sbjct: 649 LQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYITLSNI 708

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           Y  +G+  ++ +V R +  +GL+     S IE+  + H F++ D +H +   I+ +++ +
Sbjct: 709 YAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDAIHAELETL 768

Query: 605 MLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
             E+ + GY P+ + +L DVD+ Q+++ L +HSEKLA+A+GL+ T   TP++I+++ R+C
Sbjct: 769 TKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPSGTPIRIMKNLRVC 828

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCH A K I+ +  REIV RDA+RFH+F +G CSCGD+W
Sbjct: 829 GDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 131/485 (27%), Positives = 248/485 (51%), Gaps = 13/485 (2%)

Query: 89  QMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIRE 148
           ++  P++    ++ +L    R REA++L  I++ + G  V S+TY  +I  C   R   +
Sbjct: 16  ELDGPTSVSGGEVWRLCKAGRLREAIQLLGIIK-QRGLLVNSNTYGCVIEHCAKARRFED 74

Query: 149 VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
            K V   +   G E D+Y+ N ++  + +   +  A ++F  M  R++V+ + +IA    
Sbjct: 75  GKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAG 134

Query: 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
           +    +AF  F  + +   +    TF ++++A     ++  G+++H+    MG   +V V
Sbjct: 135 NNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAV 194

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
           + ALI MYSKCG I  A  VF +M+E+  V W  II   A H    EA +LY +M  +G+
Sbjct: 195 ATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGI 254

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
             +  TF  ++  C    +L   ++ H+ +   G   D++  +AL+  Y K   +++AR 
Sbjct: 255 SPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEARE 314

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRG-----EEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           +FD+M  ++VISW+A+IAGY   G       +E  +L E+M   G+ PN VTF+++L AC
Sbjct: 315 IFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRAC 374

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           +  G  E+G +I   +S+      R++  A +  +  + G + EA  +      K     
Sbjct: 375 TAHGALEQGRQIHAELSKVGFELDRSLQTA-IFNMYAKCGSIYEAEQVFSKMANKNVV-A 432

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           W + L+     G+L     +AEK++   P + + ++ +++  Y  +G + +  E++ +++
Sbjct: 433 WTSFLSMYIKCGDLS----SAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMK 488

Query: 563 RKGLR 567
            +G +
Sbjct: 489 AEGFQ 493


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/621 (36%), Positives = 359/621 (57%), Gaps = 3/621 (0%)

Query: 85  LPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLR 144
           L DT  ++      + I  L  N ++ EA+  F  +   G        + + I AC  L 
Sbjct: 62  LFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPT-QFAFSSAIRACASLG 120

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           SI   K++    L  G   +L++ + +  M+ +CG M DA ++F+EMP ++ VS   +I 
Sbjct: 121 SIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMID 180

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
           G    G++ EA L F  + +E          + + A   L+    G+ +HS  +K+GF  
Sbjct: 181 GYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFES 240

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSE-KTTVGWNTIIAGYALHGYSEEALDLYYEM 323
           ++FV  AL DMYSK G +E A  VF   SE +  V +  +I GY      E+ L ++ E+
Sbjct: 241 DIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 300

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
           R  G++ + FTFS +I+ C   A+LE   Q HA +++  F  D   +S LVD Y K G +
Sbjct: 301 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLL 360

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           E A   FD++     I+WN+L++ +G HG G++A+++FE+M+  G++PN +TF+++L+ C
Sbjct: 361 EQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGC 420

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S +GL E G + F SM + + + P   HY+C+I+LLGR G L EA   I   PF+     
Sbjct: 421 SHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFG 480

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           W + L ACR++G+ E+GK AAEKL  +EP+     V+L NIY +  + ++   V   +R 
Sbjct: 481 WCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRD 540

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
             ++ LP  SW++V  + HVF + D SH +   IY K+D ++ +I   GYVP   ++  D
Sbjct: 541 GNVKKLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLD 600

Query: 624 VDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           +D+  ++++L  HSE++AVAF LI+     P+ + ++ R+C DCH+AIK I+ VTGR+I+
Sbjct: 601 MDDSMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKII 660

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           VRD SRFHHF DG CSCGDYW
Sbjct: 661 VRDNSRFHHFTDGSCSCGDYW 681



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 168/371 (45%), Gaps = 41/371 (11%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           +   A +I+  A  + +  GKQLH+  +  G+    F++  L++MYSKCG ++ A  +FD
Sbjct: 5   TNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFD 64

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            M ++  V W  +I+G + +    EA+  +  MR  G     F FS  IR C  L S+E 
Sbjct: 65  TMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEM 124

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            KQ H   ++ G G ++   S L D YSK G + DA  VF++M CK+ +SW A+I GY  
Sbjct: 125 GKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK 184

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
            G  EEA+  F++M+   +  +     + L AC      + G  +  S+ +         
Sbjct: 185 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK--------- 235

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
                   LG                F++   +  AL       G++E    +A  ++G+
Sbjct: 236 --------LG----------------FESDIFVGNALTDMYSKAGDME----SASNVFGI 267

Query: 531 EPE--KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM--LPACSWIEVKKQPHVFLS 586
           + E   + +Y  L++ Y  + ++++   V   LRR+G+        S I+          
Sbjct: 268 DSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQ 327

Query: 587 GDQSHVQTKEI 597
           G Q H Q  +I
Sbjct: 328 GTQLHAQVMKI 338


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/606 (37%), Positives = 363/606 (59%), Gaps = 7/606 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S+  +L   +    A++  + L+  G +   S+TY  LI  CI  R++ E   +  ++  
Sbjct: 31  SEFTRLCYQRDLPRAMKAMDSLQSHGLW-ADSATYSELIKCCISNRAVHEGNLICRHLYF 89

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G  P +++ N ++ M+V+  ++ DA +LFD+MP+RN++S   +I+       + +A  L
Sbjct: 90  NGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALEL 149

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
            + +  +       T+++++R+  G+  +   + LH   +K G   +VFV  ALID+++K
Sbjct: 150 LVLMLRDNVRPNVYTYSSVLRSCNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAK 206

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            G  EDA  VFDEM     + WN+II G+A +  S+ AL+L+  M+ +G   +  T + +
Sbjct: 207 LGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSV 266

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +R CT LA LE   QAH  +V+  +  D++ N+ALVD Y K G +EDA  VF++M  ++V
Sbjct: 267 LRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDV 324

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           I+W+ +I+G   +G  +EA++LFE+M  +G +PN++T + VL ACS +GL E GW  F+S
Sbjct: 325 ITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRS 384

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M + + I P   HY CMI+LLG+ G LD+A  L+     +     W  LL ACRV  N+ 
Sbjct: 385 MKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMV 444

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           L ++AA+K+  ++PE    Y +L NIY +S K     E+   +R +G++  P CSWIEV 
Sbjct: 445 LAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVN 504

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSE 637
           KQ H F+ GD SH Q  E+ +K+++++  ++  GYVPE   +L D++ EQ +  L +HSE
Sbjct: 505 KQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSE 564

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+AFGL+       ++I ++ RIC DCH   KL + +  R IV+R   R+HHF+DG C
Sbjct: 565 KLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKC 624

Query: 698 SCGDYW 703
           SCGDYW
Sbjct: 625 SCGDYW 630


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/567 (37%), Positives = 347/567 (61%), Gaps = 1/567 (0%)

Query: 138 SACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLV 197
           S+ +  R++ +V++V + + + G   +L + N++L M+V  G + DA+ LFD M +R+  
Sbjct: 58  SSLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPY 117

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257
           S ++I+ G    G++   F +F +L    +     +   +IRA   L+ +  G+ +H   
Sbjct: 118 SWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCIT 177

Query: 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL 317
           LK G     FV   L+DMY++C  +EDA  +F +M ++    W  +I   A  G   E+L
Sbjct: 178 LKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESL 237

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
             +  MR+ G+  D      ++  C +L ++  AK  HA +   G+ LD++  +A++D Y
Sbjct: 238 VFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMY 297

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           +K G +E AR +FD+M  +NVI+W+A+IA YG HG+GE+A+ELF  ML +G+ PN +TF+
Sbjct: 298 AKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFV 357

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
           ++L ACS +GL E G   F SM  ++ + P   HY CM++LLGR G LDEA  +I G P 
Sbjct: 358 SLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPV 417

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
           +  + +W ALL ACR++ +L+L +  A  L  ++ +K  +YV+L NIY ++GK ++ A+ 
Sbjct: 418 EKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKT 477

Query: 558 IRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEE 617
              + + GLR +P  +WIEV ++ + F  GD++H ++ EIY+ + R+  ++   GY P+ 
Sbjct: 478 RDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDT 537

Query: 618 KTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMV 676
             +L DVDE+ +Q +L  HSEKLA+AFGL+      P++I ++ R+C DCH   K ++++
Sbjct: 538 NDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLI 597

Query: 677 TGREIVVRDASRFHHFKDGMCSCGDYW 703
             + I+VRDA RFHHFK+G+CSC DYW
Sbjct: 598 EQKTIIVRDAKRFHHFKEGVCSCRDYW 624



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 159/310 (51%), Gaps = 3/310 (0%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           +I AC  L+ ++  + +    L  G +   ++   ++ M+ RC ++ DA ++F +M +R+
Sbjct: 157 VIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRD 216

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
           L +  ++I  + +SG  +E+ + F  +  +          T++ A A L  ++  K +H+
Sbjct: 217 LATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHA 276

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
                G+  +V +  A+IDMY+KCGS+E A+ +FD M  +  + W+ +IA Y  HG  E+
Sbjct: 277 YINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEK 336

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV-RHGFGLDIVANSALV 374
           AL+L+  M  SG+  +  TF  ++  C+    +E  ++  + +   +G   D+   + +V
Sbjct: 337 ALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMV 396

Query: 375 DFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQML-LNGMRPN 432
           D   + GR+++A  + + M + K+ + W AL+     H   + A  +   +L L   +P 
Sbjct: 397 DLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPG 456

Query: 433 HVTFLAVLSA 442
           H   L+ + A
Sbjct: 457 HYVLLSNIYA 466


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/618 (36%), Positives = 369/618 (59%), Gaps = 26/618 (4%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           R +L  F +L    G       + +L+ A    +     + + + ++  GF  DLY  N 
Sbjct: 58  RHSLASFNLLR-SFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANA 116

Query: 171 VLLMHVRC---------------------GMMIDA-RRLFDEMPERNLVSCNMIIAGMID 208
           ++ M+ +                       + ID+ R+LFD MP R++VS N +IAG   
Sbjct: 117 LMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQ 176

Query: 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
           +G Y EA  +  ++ +E     S T ++++        ++ GK++H  A++ GF  +VF+
Sbjct: 177 NGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFI 236

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
             +LIDMY+KC  +E +   F  +S +  + WN+IIAG   +G  ++ L  +  M    V
Sbjct: 237 GSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKV 296

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
           K    +FS +I  C  L +L   KQ HA ++R GF  +    S+L+D Y+K G I+ AR+
Sbjct: 297 KPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARY 356

Query: 389 VFDKM-LC-KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           +F+K+ +C ++++SW A+I G   HG   +AV LFE+ML++G++P +V F+AVL+ACS +
Sbjct: 357 IFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHA 416

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           GL + GW+ F SM RD  + P   HYA + +LLGR G L+EA+  I     + T ++W+ 
Sbjct: 417 GLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWST 476

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           LL ACR + N+EL +    K+  ++P  +  +V++ NIY+++ + ++AA++   +R+ GL
Sbjct: 477 LLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGL 536

Query: 567 RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE 626
           +  PACSWIEV  + H FL+GD+SH    +I   ++ ++ ++ K GYV +   +L DVDE
Sbjct: 537 KKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDE 596

Query: 627 QEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
           + +R +L  HSE+LA+AFG+I+T+  T ++++++ R+C DCH AIK +A + GREI+VRD
Sbjct: 597 EHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFMAKIVGREIIVRD 656

Query: 686 ASRFHHFKDGMCSCGDYW 703
            SRFHHFK+G CSCGDYW
Sbjct: 657 NSRFHHFKNGSCSCGDYW 674



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 22/193 (11%)

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           AQ V    +   ++ W  II  YA HG    +L  +  +R  G+  D   F  ++R  T 
Sbjct: 29  AQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTL 88

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG----------------------R 382
                 A+  HA ++R GF  D+   +AL++ YSK+                       +
Sbjct: 89  FKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVK 148

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           I+  R +FD+M  ++V+SWN +IAG   +G  EEA+ + ++M    +RP+  T  ++L  
Sbjct: 149 IDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPI 208

Query: 443 CSRSGLSERGWEI 455
            +      +G EI
Sbjct: 209 FTEHANVTKGKEI 221


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/631 (36%), Positives = 371/631 (58%), Gaps = 27/631 (4%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML- 157
           + I     + R+ EAL  F ++  EG  ++   T  +++ AC  L  +   K + +Y+L 
Sbjct: 267 TMISSFSQSDRFSEALAFFRLMVLEG-VELDGVTIASVLPACSHLERLDVGKEIHAYVLR 325

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
           +     + ++ + ++ M+  C  +   RR+FD +  R +   N +I+G   +G   +A +
Sbjct: 326 NNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALI 385

Query: 218 LFLDLWEEFSDC-GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276
           LF+++ +       + T A+++ A    E  S  + +H  A+K+GF ++ +V  AL+DMY
Sbjct: 386 LFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMY 445

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR------------ 324
           S+ G ++ ++ +FD M  +  V WNT+I GY L G    AL L +EM+            
Sbjct: 446 SRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDD 505

Query: 325 -----DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379
                    K +  T   ++  C  LA++   K+ HA  +R+    DI   SALVD Y+K
Sbjct: 506 NDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAK 565

Query: 380 WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR-----PNHV 434
            G +  +R VF++M  KNVI+WN LI   G HG+GEEA+ELF+ M+    R     PN V
Sbjct: 566 CGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEV 625

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           TF+ V +ACS SGL   G  +F  M  DH ++P + HYAC+++LLGR G L+EA+ L+  
Sbjct: 626 TFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNT 685

Query: 495 APFKTTK-NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
            P +  K   W++LL ACR++ N+ELG+ AA+ L  +EP   S+YV+L NIY+S+G   +
Sbjct: 686 MPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNK 745

Query: 554 AAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGY 613
           A EV + +R+ G++  P CSWIE + + H F++GD SH Q+++++  ++ +  ++ K GY
Sbjct: 746 AMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGY 805

Query: 614 VPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKL 672
           VP+   +L +VDE E + +L  HSEKLA+AFG++NT   T +++ ++ R+C DCH A K 
Sbjct: 806 VPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKF 865

Query: 673 IAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I+ +  REI+VRD  RFHHFK+G CSCGDYW
Sbjct: 866 ISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 134/528 (25%), Positives = 239/528 (45%), Gaps = 70/528 (13%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGL---RSIREVKRVFSY 155
           S I  L   +++ +ALE F  ++ E   ++ S T  ++  AC  L     +R  K++  Y
Sbjct: 164 SFIAALCRFEKWEQALEAFRAMQMEN-MELSSFTLVSVALACSNLGVMHGLRLGKQLHGY 222

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
            L  G +   +  N ++ M+ + G + D++ LF+   +R++VS N +I+    S  + EA
Sbjct: 223 SLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEA 281

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG-FGDNVFVSCALID 274
              F  +  E  +    T A+++ A + LE + VGK++H+  L+     +N FV  AL+D
Sbjct: 282 LAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVD 341

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHF 333
           MY  C  +E  + VFD +  +    WN +I+GYA +G  E+AL L+ EM + +G+  +  
Sbjct: 342 MYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTT 401

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           T + ++  C    +  + +  H   V+ GF  D    +AL+D YS+ G+++ +  +FD M
Sbjct: 402 TMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSM 461

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLL-----------------NGMRPNHVTF 436
             ++ +SWN +I GY   GR   A+ L  +M                      +PN +T 
Sbjct: 462 EVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITL 521

Query: 437 LAVLSACSRSGLSERGWEI-----------------------------------FQSMSR 461
           + VL  C+      +G EI                                   F  M  
Sbjct: 522 MTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPN 581

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALI-----RGAPFKTTKNMWAALLTACRVNGN 516
            + I    +  AC +   G E L  E F  +     RG   K  +  +  +  AC  +G 
Sbjct: 582 KNVITWNVLIMACGMHGKGEEAL--ELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGL 639

Query: 517 LELGK---FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           +  G    +  +  +G+EP    +Y  ++++   +G+L+EA E++ T+
Sbjct: 640 ISEGLNLFYRMKHDHGVEPTS-DHYACVVDLLGRAGQLEEAYELVNTM 686



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 201/389 (51%), Gaps = 19/389 (4%)

Query: 67  KPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKR---YREALELFEILEFE 123
           +P P   K     L   + P  +   PS    S ++ L    R   +REA+  +  +   
Sbjct: 29  QPPPSIQKPTASPLTSKTPP--KPTSPSRSTASWVDALRSRTRSNDFREAISTYIEMTVS 86

Query: 124 GGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGF-EPDLYMRNRVLLMHVRCGMMI 182
           G     +  + A++ A  GL+ ++  +++ +  +  G+    + + N ++ M+ +CG + 
Sbjct: 87  GA-RPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIG 145

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
           D  ++FD + +R+ VS N  IA +     + +A   F  +  E  +  S T  ++  A +
Sbjct: 146 DVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACS 205

Query: 243 GLEL---ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
            L +   + +GKQLH  +L++G     F + AL+ MY+K G ++D++ +F+   ++  V 
Sbjct: 206 NLGVMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVS 264

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           WNT+I+ ++      EAL  +  M   GV++D  T + ++  C+ L  L+  K+ HA ++
Sbjct: 265 WNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVL 324

Query: 360 RHGFGLDIVAN----SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
           R+    D++ N    SALVD Y    ++E  R VFD +L + +  WNA+I+GY  +G  E
Sbjct: 325 RNN---DLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDE 381

Query: 416 EAVELFEQML-LNGMRPNHVTFLAVLSAC 443
           +A+ LF +M+ + G+ PN  T  +V+ AC
Sbjct: 382 KALILFIEMIKVAGLLPNTTTMASVMPAC 410



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 147/278 (52%), Gaps = 5/278 (1%)

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P R+  S    +     S D+ EA   ++++    +   +  F  +++A +GL+ +  G+
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 252 QLHSCALKMGFGDN-VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           Q+H+ A+K G+G + V V+  L++MY KCG I D   VFD ++++  V WN+ IA     
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA---SLEHAKQAHAGLVRHGFGLDI 367
              E+AL+ +  M+   +++  FT   +   C+ L     L   KQ H   +R G     
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQKT 231

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
             N+AL+  Y+K GR++D++ +F+  + ++++SWN +I+ +    R  EA+  F  M+L 
Sbjct: 232 FTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLE 291

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
           G+  + VT  +VL ACS     + G EI   + R++ +
Sbjct: 292 GVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDL 329


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/603 (40%), Positives = 363/603 (60%), Gaps = 19/603 (3%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISAC---IGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           AL LF  +  E G D+   T  A+I+AC   +GL     + ++ S  +S+GF+  + + N
Sbjct: 124 ALGLFSGMR-EMGLDMDGFTLSAVITACCDDVGL-----IGQLHSVAVSSGFDSYVSVNN 177

Query: 170 RVLLMHVRCGMMIDARRLFDEMPE-RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
            +L  + + G + DA+R+F  M   R+ VS N +I       +  +A  LF ++     +
Sbjct: 178 ALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLN 237

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS-IEDAQG 287
               T A+++ A   LE +S G Q H   +K GF  N  V   LID+YSKCG  + D + 
Sbjct: 238 VDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRK 297

Query: 288 VFDEMSEKTTVGWNTIIAGYALHG-YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
           VF+E++E   V WNT+++GY+ +  + E+AL+ + +M+  G + +  +F  +I  C+ L+
Sbjct: 298 VFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLS 357

Query: 347 SLEHAKQAHAGLVRHGFGLD-IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           S    KQ H+  ++     + I  ++AL+  YSK G ++DAR +FD+M   N +S N++I
Sbjct: 358 SPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMI 417

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
           AGY  HG   E++ LF+ ML   + P  +TF++VLSAC+ +G  E GW  F  M     I
Sbjct: 418 AGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNI 477

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
           +P A HY+CMI+LLGR G L EA  LI   PF      WA+LL ACR +GN+EL   AA 
Sbjct: 478 EPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAAN 537

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
           ++  +EP   + YVVL N+Y S+G+ +E A V + +R +G++  P CSWIEVKK+ HVF+
Sbjct: 538 QVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFV 597

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-----EQEQRVLSYHSEKLA 640
           + D SH   KEIY  ++ M  ++ + GYVP+ +  L   D     E+E R L +HSEKLA
Sbjct: 598 AEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIR-LGHHSEKLA 656

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           VAFGLI+T D  P+ +V++ RIC DCHNAIK I+ + GREI VRDA RFH FK+G CSCG
Sbjct: 657 VAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCG 716

Query: 701 DYW 703
           DYW
Sbjct: 717 DYW 719



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 112/228 (49%), Gaps = 34/228 (14%)

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG----------SIED------------ 284
           +S GK LHS  +K     + + S   I +YSKCG           I D            
Sbjct: 24  LSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAA 83

Query: 285 ---------AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
                    A  +FD++ E   V +NT+I+ YA  G +  AL L+  MR+ G+ MD FT 
Sbjct: 84  YAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTL 143

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-L 394
           S +I  C     L    Q H+  V  GF   +  N+AL+ +Y K G ++DA+ VF  M  
Sbjct: 144 SAVITACCDDVGL--IGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGG 201

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
            ++ +SWN++I  YG H  G +A+ LF++M+  G+  +  T  +VL+A
Sbjct: 202 IRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA 249



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 105/235 (44%), Gaps = 8/235 (3%)

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           F  +++ C     L   K  H+  ++         ++  +  YSK GR+  AR  F  + 
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
             NV S+NA+IA Y    R   A +LF+Q+      P+ V++  ++SA +  G +     
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQI----PEPDLVSYNTLISAYADCGETAPALG 126

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGRE-GLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           +F  M R+  +       + +I     + GL+ +  ++   + F +  ++  ALLT    
Sbjct: 127 LFSGM-REMGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGK 185

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
           NG+L+  K     + G+  E   N +++   Y    +  +A  + + + R+GL +
Sbjct: 186 NGDLDDAKRVFYGMGGIRDEVSWNSMIV--AYGQHQEGSKALGLFQEMVRRGLNV 238


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/624 (36%), Positives = 369/624 (59%), Gaps = 13/624 (2%)

Query: 88  TQMKKPSAGIC-SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           TQM+ P   IC + I     ++   EA+ L+  +  E G  V + TY  +++AC  L ++
Sbjct: 69  TQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFM-VERGVPVDNYTYPFVLAACARLGAV 127

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
           +  +R    +L  GF  DL++ N ++  +  CG    A  +FDE   R++V+ N++I   
Sbjct: 128 KLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAH 187

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSR-----TFATMIRASAGLELISVGKQLHSCALKMG 261
           ++ G   +AF    DL +E +   +      T  +++ A A L  +  GK LHS + ++G
Sbjct: 188 LNKGLSEKAF----DLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELG 243

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
             +N+ V+ A++DMY KC  IE AQ VF+ + EK  + W ++++G A  GY +EAL L+ 
Sbjct: 244 LDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQ 303

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
           +M+ + +++D  T   ++  C +  +L+  K  H  + +     D+V  +ALVD Y+K G
Sbjct: 304 KMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCG 363

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            I+ A  VF +M  +NV +WNALI G   HG GE+A+ LF+QM  + + P+ VTF+A+L 
Sbjct: 364 SIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLC 423

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           ACS +GL + G  +FQ+M    +I+PR  HY C+++LL R   +D+A A I   P K   
Sbjct: 424 ACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANS 483

Query: 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            +WA LL ACR  G+ +L +    ++  +EP+    YV+L N+Y    +   A ++ + +
Sbjct: 484 VLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQM 543

Query: 562 RRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEIS-KHGYVPEEKTL 620
           + KG+   P CSWIE+    H F++GD+SH+QT++IY  ++ M   ++   G+VP    +
Sbjct: 544 KNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANV 603

Query: 621 LPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGR 679
           L D++E+E +  L  HSEKLA+A GLI+T   +P++IV++ R+C DCH+ +K+ + V  R
Sbjct: 604 LFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNR 663

Query: 680 EIVVRDASRFHHFKDGMCSCGDYW 703
           EIV RD SRFHHFK+G CSC D+W
Sbjct: 664 EIVARDRSRFHHFKEGSCSCMDFW 687



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 214/427 (50%), Gaps = 12/427 (2%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVL--LMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           SI + K+  + +L T    +    ++++  L     G +  AR+LF +M   +   CN +
Sbjct: 23  SISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTM 82

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           I G   S +  EA  L+  + E      + T+  ++ A A L  + +G++ H   LK GF
Sbjct: 83  IRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGF 142

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
           G ++FV  ALI  Y  CGS   A  VFDE + +  V WN +I  +   G SE+A DL  E
Sbjct: 143 GSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDE 202

Query: 323 M-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
           M +   ++ D  T   ++  C +L +LE  K  H+     G   ++  N+A++D Y K  
Sbjct: 203 MTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCD 262

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            IE A+ VF+++  K+V+SW ++++G    G  +EA+ LF++M LN +  + +T + VLS
Sbjct: 263 DIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLS 322

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           AC+++G  ++G  I   + +  +I    +    ++++  + G +D A  + R    +   
Sbjct: 323 ACAQTGALDQGKYIHLLIDK-FEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVF 381

Query: 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL----SNYVVLLNIYNSSGKLKEAAEV 557
             W AL+    ++G+   G+ A      ME +KL      ++ LL   + +G + E   +
Sbjct: 382 T-WNALIGGLAMHGH---GEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAM 437

Query: 558 IRTLRRK 564
            + ++ K
Sbjct: 438 FQAMKNK 444


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/520 (41%), Positives = 328/520 (63%), Gaps = 1/520 (0%)

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R++FDEM ER++VS N ++ G  + G + EA      +  E     S T +T++   A  
Sbjct: 124 RKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAEC 183

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             +  G ++H  A + GF  +VFV  +LIDMY+ C   + +  VFD +  +  + WN+++
Sbjct: 184 ADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLL 243

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           AG A +G  EEAL ++  M  +GV+    TFS +I +C  LASL   KQ HA ++  GF 
Sbjct: 244 AGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFE 303

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            ++  +S+L+D Y K G I  A  +FDKM   +V+SW A+I GY  HG   EA+ LFE+M
Sbjct: 304 DNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERM 363

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
            L   +PNH+TFLAVL+ACS +GL ++GW+ F+SMS  + I P   H+A + + LGR G 
Sbjct: 364 ELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGE 423

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           LDEA+  I     K T ++W+ LL ACRV+ N  L +  A+K+  +EP  + ++VVL N+
Sbjct: 424 LDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNM 483

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           Y++SG+  EAA +  ++R+KG++  PACSWIEVK + HVF++ D+SH     I   ++  
Sbjct: 484 YSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAF 543

Query: 605 MLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
             ++++ G+VP  + +  D++E+ +  VL  HSEKLA+ FG+I+T   T ++++++ R+C
Sbjct: 544 SEQMAREGHVPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRVC 603

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCH   K I+ +  REIVVRDA+RFHHFKDG CSCGD+W
Sbjct: 604 IDCHTVTKFISKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 159/335 (47%), Gaps = 5/335 (1%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R+ EAL     +  EG F   S T   ++        ++    V  +    GF+ D+++ 
Sbjct: 150 RHHEALGFVRKMCREG-FRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVG 208

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           + ++ M+  C     + ++FD +P R+ +  N ++AG   +G   EA  +F  + +    
Sbjct: 209 SSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVR 268

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               TF+++I     L  +  GKQLH+  +  GF DNVF+S +LIDMY KCG I  A  +
Sbjct: 269 PVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCI 328

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD+MS    V W  +I GYALHG + EAL L+  M     K +H TF  ++  C+    +
Sbjct: 329 FDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLV 388

Query: 349 EHAKQAHAGLVRH-GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WNALIA 406
           +   +    +  H G    +   +AL D   + G +++A +   KM  K   S W+ L+ 
Sbjct: 389 DKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLR 448

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
               H     A E+ ++++   + P  +    VLS
Sbjct: 449 ACRVHKNTMLAEEVAKKIM--ELEPRSIGSHVVLS 481



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 178/412 (43%), Gaps = 58/412 (14%)

Query: 210 GDYLEAFLLFLDLWEEFSDCGS--RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
           G + +A  LFL +    +   S   +    +++ A L L ++G  LH+ A++ G   + F
Sbjct: 27  GHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHALAIRSGAFADRF 86

Query: 268 VSCALIDMYSKC-------------------GSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
            + AL+++Y K                     + E  + VFDEM E+  V WNT++ G A
Sbjct: 87  TANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCA 146

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
             G   EAL    +M   G + D FT S ++ I    A ++   + H    R+GF  D+ 
Sbjct: 147 EEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVF 206

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             S+L+D Y+   R + +  VFD +  ++ I WN+L+AG   +G  EEA+ +F +ML  G
Sbjct: 207 VGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAG 266

Query: 429 MRPNHVTFLAVLSACS-----RSGLSERGW--------EIFQSMSR-------------- 461
           +RP  VTF +++  C      R G     +         +F S S               
Sbjct: 267 VRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAH 326

Query: 462 ---DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN---MWAALLTACRVNG 515
              D    P  + +  MI      G   EA  L         K     + A+LTAC   G
Sbjct: 327 CIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAG 386

Query: 516 NLELG-KF--AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
            ++ G K+  +    YG+ P  L ++  L +    +G+L EA   I  ++ K
Sbjct: 387 LVDKGWKYFKSMSNHYGIVP-TLEHFAALADTLGRAGELDEAYNFISKMQIK 437



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/260 (24%), Positives = 101/260 (38%), Gaps = 25/260 (9%)

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM--IIRICTRLASLEHAKQAHAG 357
           W   I   A  G+  +A+ L+  MR S         S+   ++ C  L         HA 
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 358 LVRHGFGLDIVANSALVDFYSKW-------------------GRIEDARHVFDKMLCKNV 398
            +R G   D    +AL++ Y K                       E  R VFD+M+ ++V
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SWN L+ G    GR  EA+    +M   G RP+  T   VL   +     +RG E+   
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGF 195

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
             R+          + +I++       D +  +    P +    +W +LL  C  NG++E
Sbjct: 196 AFRN-GFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DHILWNSLLAGCAQNGSVE 253

Query: 519 --LGKFAAEKLYGMEPEKLS 536
             LG F      G+ P  ++
Sbjct: 254 EALGIFRRMLQAGVRPVPVT 273



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 97/206 (47%), Gaps = 3/206 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N    EAL +F  +  + G      T+ +LI  C  L S+R  K++ +Y++  GFE +++
Sbjct: 249 NGSVEEALGIFRRM-LQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVF 307

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + + ++ M+ +CG +  A  +FD+M   ++VS   +I G    G   EA +LF  +    
Sbjct: 308 ISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGN 367

Query: 227 SDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
           +     TF  ++ A +   L+  G K   S +   G    +    AL D   + G +++A
Sbjct: 368 AKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEA 427

Query: 286 QGVFDEMSEKTTVG-WNTIIAGYALH 310
                +M  K T   W+T++    +H
Sbjct: 428 YNFISKMQIKPTASVWSTLLRACRVH 453


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/595 (35%), Positives = 350/595 (58%), Gaps = 2/595 (0%)

Query: 110  YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
            Y  A +LF  ++ EG  +    T+ +++  C    ++   +++   ++ +G + D+ + N
Sbjct: 568  YEAAYKLFLEMKKEG-LEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGN 626

Query: 170  RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
             ++ M++RCG + DA  +F  +  RN++S   +I G  D G+  +AF LF  +  +    
Sbjct: 627  ALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKP 686

Query: 230  GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
               TF+++++A      +  GK++ +  L  G+  +  V  ALI  YSK GS+ DA+ VF
Sbjct: 687  VKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVF 746

Query: 290  DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
            D+M  +  + WN +IAGYA +G    AL   Y+M++ GV ++ F+F  I+  C+  ++LE
Sbjct: 747  DKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALE 806

Query: 350  HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
              K+ HA +V+     D+   +AL+  Y+K G +E+A+ VFD    KNV++WNA+I  Y 
Sbjct: 807  EGKRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYA 866

Query: 410  NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
             HG   +A++ F  M   G++P+  TF ++LSAC+ SGL   G  IF S+   H + P  
Sbjct: 867  QHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTI 926

Query: 470  MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
             HY C++ LLGR G   EA  LI   PF     +W  LL ACR++GN+ L + AA     
Sbjct: 927  EHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALK 986

Query: 530  MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
            +     + YV+L N+Y ++G+  + A++ R +  +G+R  P  SWIEV    H F++ D+
Sbjct: 987  LNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADR 1046

Query: 590  SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINT 648
            SH +T EIY ++ R+ LE+ + GY P+ + +L ++D++ Q   L  HSE+LA+A+GL+ T
Sbjct: 1047 SHPETAEIYEELKRLSLEMERAGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKT 1106

Query: 649  SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
               TP++I ++ RIC DCH A K I+ + GREI+ RD++RFH FK+G CSC D+W
Sbjct: 1107 PPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 137/461 (29%), Positives = 234/461 (50%), Gaps = 10/461 (2%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I  L  +  Y EA E +  +  +G   +  +TY ++++AC   +++   + + S++   G
Sbjct: 357 IAALAQHGHYEEAFEQYYQMRSDG-VVMNRTTYLSVLNACSTSKALGAGELIHSHISEVG 415

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              D+ + N ++ M+ RCG +  AR LF+ MP+R+L+S N IIAG     D  EA  L+ 
Sbjct: 416 HSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYK 475

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +  E    G  TF  ++ A       S GK +H   L+ G   N  ++ AL++MY +CG
Sbjct: 476 QMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCG 535

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           SI +AQ VF+    +  + WN++IAG+A HG  E A  L+ EM+  G++ D  TF+ ++ 
Sbjct: 536 SIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLV 595

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C    +LE  +Q H  ++  G  LD+   +AL++ Y + G ++DA  VF  +  +NV+S
Sbjct: 596 GCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMS 655

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           W A+I G+ + G   +A ELF QM  +G +P   TF ++L AC  S   + G ++   + 
Sbjct: 656 WTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHIL 715

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
                    +  A +I    + G + +A  +    P +   + W  ++     NG   LG
Sbjct: 716 NSGYELDTGVGNA-LISAYSKSGSMTDARKVFDKMPNRDIMS-WNKMIAGYAQNG---LG 770

Query: 521 KFAAEKLYGMEPEKLS----NYVVLLNIYNSSGKLKEAAEV 557
             A +  Y M+ + +     ++V +LN  +S   L+E   V
Sbjct: 771 GTALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRV 811



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 230/443 (51%), Gaps = 15/443 (3%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           ++A +LFE ++   GF     TY ++++AC     +   K++ S ++  G++ D  ++N 
Sbjct: 165 KKAFQLFEEMQ-TAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNS 223

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL-LFLDLWEEFSDC 229
           +L M+ +C  +  AR++F  +  R++VS N ++ G+     Y+E  + LF  +  E    
Sbjct: 224 LLNMYGKCEDLPSARQVFSGIYRRDVVSYNTML-GLYAQKAYVEECIGLFGQMSSEGIPP 282

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              T+  ++ A     ++  GK++H  A+  G   ++ V  AL  M+ +CG +  A+   
Sbjct: 283 DKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQAL 342

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           +  +++  V +N +IA  A HG+ EEA + YY+MR  GV M+  T+  ++  C+   +L 
Sbjct: 343 EAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALG 402

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             +  H+ +   G   D+   ++L+  Y++ G +  AR +F+ M  +++ISWNA+IAGY 
Sbjct: 403 AGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYA 462

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
                 EA++L++QM   G++P  VTFL +LSAC+ S     G  I + + R   IK   
Sbjct: 463 RREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRS-GIKSNG 521

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY- 528
                ++ +  R G + EA  +  G   +   + W +++     +G+ E    AA KL+ 
Sbjct: 522 HLANALMNMYRRCGSIMEAQNVFEGTRARDIIS-WNSMIAGHAQHGSYE----AAYKLFL 576

Query: 529 -----GMEPEKLSNYVVLLNIYN 546
                G+EP+K++   VL+   N
Sbjct: 577 EMKKEGLEPDKITFASVLVGCKN 599



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/495 (26%), Positives = 232/495 (46%), Gaps = 47/495 (9%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E + LF  +  EG       TY  L+ A      + E KR+    ++ G   D+ +   +
Sbjct: 267 ECIGLFGQMSSEG-IPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTAL 325

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
             M VRCG +  A++  +   +R++V  N +IA +   G Y EAF  +  +  +      
Sbjct: 326 ATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNR 385

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T+ +++ A +  + +  G+ +HS   ++G   +V +  +LI MY++CG +  A+ +F+ 
Sbjct: 386 TTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNT 445

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M ++  + WN IIAGYA      EA+ LY +M+  GVK    TF  ++  CT  ++    
Sbjct: 446 MPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDG 505

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K  H  ++R G   +    +AL++ Y + G I +A++VF+    +++ISWN++IAG+  H
Sbjct: 506 KMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQH 565

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS--------------------------- 444
           G  E A +LF +M   G+ P+ +TF +VL  C                            
Sbjct: 566 GSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLG 625

Query: 445 --------RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL---IR 493
                   R G  +  +E+F S+   H+     M +  MI     +G   +AF L   ++
Sbjct: 626 NALINMYIRCGSLQDAYEVFHSLR--HR---NVMSWTAMIGGFADQGEDRKAFELFWQMQ 680

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYV--VLLNIYNSSGKL 551
              FK  K+ ++++L AC  +  L+ GK     +     E L   V   L++ Y+ SG +
Sbjct: 681 NDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYE-LDTGVGNALISAYSKSGSM 739

Query: 552 KEAAEVIRTLRRKGL 566
            +A +V   +  + +
Sbjct: 740 TDARKVFDKMPNRDI 754



 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 137/535 (25%), Positives = 238/535 (44%), Gaps = 64/535 (11%)

Query: 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186
           +   + Y  L+  C   RS+ E KR+ + M+  G  PD+++ N ++ M+V+C  + DA +
Sbjct: 79  ETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQ 138

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           +F +MP R+++S N +I+     G   +AF LF ++          T+ +++ A      
Sbjct: 139 VFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAE 198

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           +  GK++HS  ++ G+  +  V  +L++MY KC  +  A+ VF  +  +  V +NT++  
Sbjct: 199 LEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGL 258

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           YA   Y EE + L+ +M   G+  D  T+  ++   T  + L+  K+ H   V  G   D
Sbjct: 259 YAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSD 318

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           I   +AL   + + G +  A+   +    ++V+ +NALIA    HG  EEA E + QM  
Sbjct: 319 IRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRS 378

Query: 427 NGMRPNHVTFLAVLSACS-----------------------------------RSGLSER 451
           +G+  N  T+L+VL+ACS                                   R G   R
Sbjct: 379 DGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPR 438

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWAALL 508
             E+F +M +   I      +  +I    R     EA  L   ++    K  +  +  LL
Sbjct: 439 ARELFNTMPKRDLIS-----WNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLL 493

Query: 509 TACRVNGNLELGKFAAEKLY--GMEPE-KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
           +AC  +     GK   E +   G++    L+N   L+N+Y   G + EA  V      +G
Sbjct: 494 SACTNSSAYSDGKMIHEDILRSGIKSNGHLAN--ALMNMYRRCGSIMEAQNVF-----EG 546

Query: 566 LRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTL 620
            R     SW       +  ++G   H   +  Y    ++ LE+ K G  P++ T 
Sbjct: 547 TRARDIISW-------NSMIAGHAQHGSYEAAY----KLFLEMKKEGLEPDKITF 590



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 129/265 (48%), Gaps = 21/265 (7%)

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G   E L   Y+ R +  + +   +  +++ CTR  SL  AK+ HA +V  G G DI  +
Sbjct: 63  GSEREDLSNAYQPRPT--ETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLS 120

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           + L++ Y K   + DA  VF KM  ++VISWN+LI+ Y   G  ++A +LFE+M   G  
Sbjct: 121 NLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFI 180

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQS-MSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
           P+ +T++++L+AC      E G +I    +   ++  PR  +   ++ + G+   L  A 
Sbjct: 181 PSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQN--SLLNMYGKCEDLPSAR 238

Query: 490 ALIRG------APFKTTKNMWA--ALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
            +  G        + T   ++A  A +  C       +G F      G+ P+K++ Y+ L
Sbjct: 239 QVFSGIYRRDVVSYNTMLGLYAQKAYVEEC-------IGLFGQMSSEGIPPDKVT-YINL 290

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGL 566
           L+ + +   L E   + +    +GL
Sbjct: 291 LDAFTTPSMLDEGKRIHKLAVNEGL 315


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/573 (36%), Positives = 356/573 (62%), Gaps = 2/573 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           ++  ++ AC  L ++   +RV   +   GFE D++++N ++ ++ +CG ++ A  +F  +
Sbjct: 175 SFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRL 234

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            +R +VS   II+G   +G  +EA  +F ++ +           +++RA   +E +  GK
Sbjct: 235 VDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGK 294

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            +H C +KMG      +  +L  +Y+KCG +  A+  F+++   + + WN +I+GY  +G
Sbjct: 295 SIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNG 354

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
           Y+EEA++L+  M+   ++ D  T +  I  C ++ SLE A+     +    F  D++ N+
Sbjct: 355 YAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNT 414

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           +L+D Y+K G ++ AR VFD++  K+V+ W+A++ GYG HG+G E++ LF  M   G+ P
Sbjct: 415 SLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSP 474

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           N VTF+ +L+AC  SGL E GW++F  M RD+ I+PR  HYAC+++LLGR G LD A+  
Sbjct: 475 NDVTFVGLLTACKNSGLVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLGRAGHLDRAYNF 533

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           +   P +   ++W ALL+AC+++ ++ LG++AAE+L+ ++P    +YV L N+Y SS   
Sbjct: 534 VMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLW 593

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
              A+V   +R KGL      S IE+  +   F +GD++H ++KEI+ +V+ +   + + 
Sbjct: 594 DCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEA 653

Query: 612 GYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           G+VP  +++L D++ E+ +  L  HSE+LA+A+GLI+T   T L+I ++ R C +CH AI
Sbjct: 654 GFVPHTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCHAAI 713

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           KLI+ +  REIVVRDA RFHHFKDG CSCGDYW
Sbjct: 714 KLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 107/192 (55%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
            Q+++  L  G     F+   L++  S  G +  A+ +FD+  +     WN I+  Y+ H
Sbjct: 92  NQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRH 151

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G+   A+++Y  M+ + V  D F+F  +++ C+ L +LE  ++ H  + RHGF  D+   
Sbjct: 152 GFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQ 211

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           + LV  Y+K G I  A  VF +++ + ++SW ++I+GY  +G+  EA+ +F +M    +R
Sbjct: 212 NGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVR 271

Query: 431 PNHVTFLAVLSA 442
           P+ +  ++VL A
Sbjct: 272 PDWIALVSVLRA 283



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 82/191 (42%), Gaps = 6/191 (3%)

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           +S  K D F  S+I     +     H  Q +A L+  G        + LV+  S  G + 
Sbjct: 69  ESTFKPDKFYASLIDDSIHK----THLNQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVS 124

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            AR +FDK    +V  WNA++  Y  HG    A+E++ +M +  + P+  +F  VL ACS
Sbjct: 125 CARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACS 184

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
                E G  +   + R H  +        ++ L  + G +  A A+  G     T   W
Sbjct: 185 ALPALEMGRRVHGQIFR-HGFESDVFVQNGLVALYAKCGEIVRANAVF-GRLVDRTIVSW 242

Query: 505 AALLTACRVNG 515
            ++++    NG
Sbjct: 243 TSIISGYAQNG 253



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/225 (20%), Positives = 96/225 (42%), Gaps = 3/225 (1%)

Query: 88  TQMKKPSAGIC-SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
            Q++ PS     + I   V N    EA+ELF +++        S T  + I+AC  + S+
Sbjct: 333 NQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMK-SKNIRPDSITVTSSIAACAQIGSL 391

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
              + +  Y+  + F  D+ +   ++  + +CG +  AR +FD +P++++V  + ++ G 
Sbjct: 392 ELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGY 451

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
              G   E+ +LF  + +        TF  ++ A     L+  G  L       G     
Sbjct: 452 GLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPRH 511

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALH 310
                ++D+  + G ++ A      M  +  V  W  +++   +H
Sbjct: 512 QHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIH 556


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/611 (37%), Positives = 365/611 (59%), Gaps = 8/611 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + +  L  N R  EA+ LF  +  EG     + T  +++  C+ L        +  Y + 
Sbjct: 140 AMLSGLCRNARAAEAVGLFGRMVMEG-VAGDAVTVSSVLPMCVLLGDRALALAMHLYAVK 198

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G + +L++ N ++ ++ + GM+ + R++FD M  R+LV+ N II+G    G    A  +
Sbjct: 199 HGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEM 258

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF--GDNVFVSCALIDMY 276
           F  + +        T  ++  A A    I  G+ +H   ++ G+  GD +    A++DMY
Sbjct: 259 FCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGD-IIAGNAIVDMY 317

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTF 335
           +K   IE AQ +FD M  +  V WNT+I GY  +G + EA+ +Y  M +  G+K    TF
Sbjct: 318 AKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTF 377

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
             ++   + L +L+   + HA  ++ G  LD+   + ++D Y+K G++++A  +F++   
Sbjct: 378 VSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPR 437

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           ++   WNA+I+G G HG G +A+ LF QM   G+ P+HVTF+++L+ACS +GL ++G   
Sbjct: 438 RSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNF 497

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F  M   + IKP A HYACM+++ GR G LD+AF  IR  P K    +W ALL ACR++G
Sbjct: 498 FNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHG 557

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575
           N+E+GK A++ L+ ++P+ +  YV++ N+Y   GK     EV   +RR+ L+  P  S I
Sbjct: 558 NVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSI 617

Query: 576 EVKKQPHVFLSGDQS--HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVL 632
           EVK+  +VF SG+Q   H Q +EI R++  ++ +I   GYVP+   +L DV+E E +++L
Sbjct: 618 EVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQIL 677

Query: 633 SYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHF 692
           + HSE+LA+AFG+INT   TPL I ++ R+C DCHNA K I+ +T REI+VRD++RFHHF
Sbjct: 678 NNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHF 737

Query: 693 KDGMCSCGDYW 703
           KDG CSCGD+W
Sbjct: 738 KDGYCSCGDFW 748



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 172/358 (48%), Gaps = 45/358 (12%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGF--GDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           TF  ++RA+ G        QLH+CAL++G   GD  F S AL+  Y + G + DA   FD
Sbjct: 73  TFPPLLRAAQG---PGTAAQLHACALRLGLLRGD-AFASGALVHAYLRFGRVRDAYRAFD 128

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           EM  +    WN +++G   +  + EA+ L+  M   GV  D  T S ++ +C  L     
Sbjct: 129 EMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRAL 188

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
           A   H   V+HG   ++   +A++D Y K G +E+ R VFD M  +++++WN++I+G+  
Sbjct: 189 ALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQ 248

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG-----------LSERGWEIFQSM 459
            G+   AVE+F  M  +G+ P+ +T L++ SA ++ G           +  RGW++   +
Sbjct: 249 GGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDII 308

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
           + +            ++++  +   ++ A  +    P +   + W  L+T    NG    
Sbjct: 309 AGN-----------AIVDMYAKLSKIEAAQRMFDSMPVRDAVS-WNTLITGYMQNG---- 352

Query: 520 GKFAAEKLY---------GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
              A+E ++         G++P +   +V +L  Y+  G L++   +     + GL +
Sbjct: 353 --LASEAIHVYDHMQKHEGLKPIQ-GTFVSVLPAYSHLGALQQGTRMHALSIKTGLNL 407


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 247/603 (40%), Positives = 363/603 (60%), Gaps = 19/603 (3%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISAC---IGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           AL LF  +  E G D+   T  A+I+AC   +GL     + ++ S  +S+GF+  + + N
Sbjct: 124 ALGLFSGMR-EMGLDMDXFTLSAVITACCDDVGL-----IGQLHSVAVSSGFDSYVSVNN 177

Query: 170 RVLLMHVRCGMMIDARRLFDEMPE-RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
            +L  + + G + DA+R+F  M   R+ VS N +I       +  +A  LF ++     +
Sbjct: 178 ALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLN 237

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS-IEDAQG 287
               T A+++ A   LE +S G Q H   +K GF  N  V   LID+YSKCG  + D + 
Sbjct: 238 VDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRK 297

Query: 288 VFDEMSEKTTVGWNTIIAGYALHG-YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
           VF+E++E   V WNT+++GY+ +  + E+AL+ + +M+  G + +  +F  +I  C+ L+
Sbjct: 298 VFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLS 357

Query: 347 SLEHAKQAHAGLVRHGFGLD-IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           S    KQ H+  ++     + I  ++AL+  YSK G ++DAR +FD+M   N +S N++I
Sbjct: 358 SPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMI 417

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
           AGY  HG   E++ LF+ ML   + P  +TF++VLSAC+ +G  E GW  F  M     I
Sbjct: 418 AGYAQHGIEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNI 477

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
           +P A HY+CMI+LLGR G L EA  LI   PF      WA+LL ACR +GN+EL   AA 
Sbjct: 478 EPEAEHYSCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAAN 537

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
           ++  +EP   + YVVL N+Y S+G+ +E A V + +R +G++  P CSWIEVKK+ HVF+
Sbjct: 538 QVLQLEPSNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFV 597

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-----EQEQRVLSYHSEKLA 640
           + D SH   KEIY  ++ M  ++ + GYVP+ +  L   D     E+E R L +HSEKLA
Sbjct: 598 AEDSSHPMIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIR-LGHHSEKLA 656

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           VAFGLI+T D  P+ +V++ RIC DCHNAIK I+ + GREI VRDA RFH FK+G CSCG
Sbjct: 657 VAFGLISTKDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCG 716

Query: 701 DYW 703
           DYW
Sbjct: 717 DYW 719



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 112/228 (49%), Gaps = 34/228 (14%)

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG----------SIED------------ 284
           +S GK LHS  +K     + + S   I +YSKCG           I D            
Sbjct: 24  LSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDISDPNVFSFNAIIAA 83

Query: 285 ---------AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
                    A  +FD++ E   V +NT+I+ YA  G +  AL L+  MR+ G+ MD FT 
Sbjct: 84  YAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTL 143

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-L 394
           S +I  C     L    Q H+  V  GF   +  N+AL+ +Y K G ++DA+ VF  M  
Sbjct: 144 SAVITACCDDVGL--IGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGG 201

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
            ++ +SWN++I  YG H  G +A+ LF++M+  G+  +  T  +VL+A
Sbjct: 202 IRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA 249



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 105/235 (44%), Gaps = 8/235 (3%)

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           F  +++ C     L   K  H+  ++         ++  +  YSK GR+  AR  F  + 
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
             NV S+NA+IA Y    R   A +LF+Q+      P+ V++  ++SA +  G +     
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQI----PEPDLVSYNTLISAYADCGETAPALG 126

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGRE-GLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           +F  M R+  +       + +I     + GL+ +  ++   + F +  ++  ALLT    
Sbjct: 127 LFSGM-REMGLDMDXFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGK 185

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
           NG+L+  K     + G+  E   N +++   Y    +  +A  + + + R+GL +
Sbjct: 186 NGDLDDAKRVFYGMGGIRDEVSWNSMIV--AYGQHQEGSKALGLFQEMVRRGLNV 238


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 211/593 (35%), Positives = 360/593 (60%), Gaps = 2/593 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E+  +F  ++ +G       TY +++  C  + ++   +++ + ++ TGF+ ++Y+ + +
Sbjct: 398 ESFRIFRQMQIKG-LIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVL 456

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ + G +  A  +   + E ++VS   +I+G      + EA   F ++        +
Sbjct: 457 IDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDN 516

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
             F++ I A AG++ ++ G+Q+H+ +   G+ +++ +  AL+ +Y++CG I++A   F++
Sbjct: 517 IGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEK 576

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           +  K ++ WN +I+G+A  GY E+AL ++ +M  + ++   FTF   +     +A+++  
Sbjct: 577 IDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQG 636

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           KQ HA +++ GF  DI  ++AL+ FY+K G IEDAR  F +M  KN +SWNA+I GY  H
Sbjct: 637 KQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQH 696

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G G EAV LFE+M   G  PNHVTF+ VLSACS  GL  +G   F+SMS++H + P+  H
Sbjct: 697 GYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAH 756

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           YAC+++L+ R G L  A   I   P +    +W  LL+AC V+ N+E+G+FAA+ L  +E
Sbjct: 757 YACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELE 816

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           PE  + YV+L N+Y  SGK     +  + +R +G++  P  SWIEVK   H F  GD+ H
Sbjct: 817 PEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLH 876

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSD 650
               +IY  +  +  + ++ GY  +  +LL DV+++++    Y HSEKLA+ FGL++ SD
Sbjct: 877 PLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSD 936

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             P+ ++++ R+C DCH+ IK ++ ++ R I+VRDA RFHHF+ G+CSC DYW
Sbjct: 937 TVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 233/473 (49%), Gaps = 37/473 (7%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G      TY  L+  C+   S+ E K++   +L  GF  +  + N+++ ++   G +   
Sbjct: 5   GICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGV 64

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
            ++F++MP R++ S + II+G ++         LF  + EE       +FA+++RA +G 
Sbjct: 65  VKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGH 124

Query: 245 EL-ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
            + I   +Q+H+  +  G   +  +S  LI +Y+K G I  A+ VFD +  K +V W  +
Sbjct: 125 RIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAM 184

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I+G++ +GY EEA+ L+ EM  +G+    + FS ++  CT++   +  +Q HA + ++G 
Sbjct: 185 ISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGS 244

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
            L+    +ALV  YS+      A  VF KM  K+ +S+N+LI+G    G  + A+ELF +
Sbjct: 245 SLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTK 304

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERG-----WEIFQSMSRDHKIK------------ 466
           M  + ++P+ VT  ++LSAC+ +G   +G     + I   +S D  ++            
Sbjct: 305 MKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSD 364

Query: 467 -------------PRAMHYACMIELLGREGLLDEAFALIRGAPFK---TTKNMWAALLTA 510
                           + +  M+   G+   L E+F + R    K     +  + ++L  
Sbjct: 365 IKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRT 424

Query: 511 CRVNGNLELGKFAAEKLYGMEPEKLSNYV--VLLNIYNSSGKLKEAAEVIRTL 561
           C   G L+LG+    ++     +  + YV  VL+++Y   GKL  A  ++RTL
Sbjct: 425 CTSVGALDLGEQIHTQVIKTGFQ-FNVYVCSVLIDMYAKHGKLDTAHVILRTL 476



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 184/369 (49%), Gaps = 1/369 (0%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D    K S    + I     N    EA+ LF  +   G F      + +++S C  ++  
Sbjct: 171 DNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPT-PYVFSSVLSGCTKIKLF 229

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
              +++ + +   G   + Y+ N ++ ++ R    + A ++F +M  ++ VS N +I+G+
Sbjct: 230 DVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGL 289

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
              G    A  LF  +  ++      T A+++ A A    +  G+QLHS  +K G   ++
Sbjct: 290 AQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDM 349

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
            V  AL+D+Y  C  I+ A  +F     +  V WN ++  +       E+  ++ +M+  
Sbjct: 350 IVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIK 409

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           G+  + FT+  I+R CT + +L+  +Q H  +++ GF  ++   S L+D Y+K G+++ A
Sbjct: 410 GLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTA 469

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
             +   +   +V+SW ALI+GY  H    EA++ F++ML  G++ +++ F + +SAC+  
Sbjct: 470 HVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGI 529

Query: 447 GLSERGWEI 455
               +G +I
Sbjct: 530 QALNQGRQI 538



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 89/193 (46%), Gaps = 1/193 (0%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M   G+  +  T+  ++ +C    SL   K+ H  +++ GFG + V  + LVD Y   G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           ++    VF+ M  ++V SW+ +I+G+         ++LF  M+   + P  ++F +VL A
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
           CS   +  R  E   +    H +    +    +I L  + GL+  A  +      K + +
Sbjct: 121 CSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVS 180

Query: 503 MWAALLTACRVNG 515
            W A+++    NG
Sbjct: 181 -WVAMISGFSQNG 192


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/621 (36%), Positives = 358/621 (57%), Gaps = 3/621 (0%)

Query: 85  LPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLR 144
           L DT  ++      + I  L  N ++ EA+  F  +   G        + + I AC  L 
Sbjct: 62  LFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPT-QFAFSSAIRACASLG 120

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           SI   K++    L  G   +L++ + +  M+ +CG M DA ++F+EMP ++ VS   +I 
Sbjct: 121 SIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMID 180

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
           G    G++ EA L F  + +E          + + A   L+    G+ +HS  +K+GF  
Sbjct: 181 GYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFES 240

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSE-KTTVGWNTIIAGYALHGYSEEALDLYYEM 323
           ++FV  AL DMYSK G +E A  VF   SE +  V +  +I GY      E+ L ++ E+
Sbjct: 241 DIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 300

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
           R  G++ + FTFS +I+ C   A+LE   Q HA +++  F  D   +S LVD Y K G +
Sbjct: 301 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLL 360

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           E A   FD++     I+WN+L++ +G HG G++A++ FE+M+  G++PN +TF+++L+ C
Sbjct: 361 EHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGC 420

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S +GL E G + F SM + + + P   HY+C+I+LLGR G L EA   I   PF+     
Sbjct: 421 SHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFG 480

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           W + L ACR++G+ E+GK AAEKL  +EP+     V+L NIY +  + ++   V   +R 
Sbjct: 481 WCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRD 540

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
             ++ LP  SW++V  + HVF + D SH +   IY K+D ++ +I   GYVP   ++  D
Sbjct: 541 GNVKKLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVPXTDSVPLD 600

Query: 624 VDE-QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           +D+  ++++L  HSE++AVAF LI+     P+ + ++ R+C DCH+AIK I+ VTGR+I+
Sbjct: 601 MDDXMKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKII 660

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           VRD SRFHHF DG CSCGDYW
Sbjct: 661 VRDNSRFHHFTDGSCSCGDYW 681



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 100/371 (26%), Positives = 168/371 (45%), Gaps = 41/371 (11%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           +   A +I+  A  + +  GKQLH+  +  G+    F++  L++MYSKCG ++ A  +FD
Sbjct: 5   TNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFD 64

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            M ++  V W  +I+G + +    EA+  +  MR  G     F FS  IR C  L S+E 
Sbjct: 65  TMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEM 124

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            KQ H   ++ G G ++   S L D YSK G + DA  VF++M CK+ +SW A+I GY  
Sbjct: 125 GKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK 184

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
            G  EEA+  F++M+   +  +     + L AC      + G  +  S+ +         
Sbjct: 185 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK--------- 235

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
                   LG                F++   +  AL       G++E    +A  ++G+
Sbjct: 236 --------LG----------------FESDIFVGNALTDMYSKAGDME----SASNVFGI 267

Query: 531 EPE--KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM--LPACSWIEVKKQPHVFLS 586
           + E   + +Y  L++ Y  + ++++   V   LRR+G+        S I+          
Sbjct: 268 DSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQ 327

Query: 587 GDQSHVQTKEI 597
           G Q H Q  +I
Sbjct: 328 GTQLHAQVMKI 338


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 226/607 (37%), Positives = 354/607 (58%), Gaps = 3/607 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I  L  N ++ EA+  F  +   G        + + I AC  L SI   K++    L 
Sbjct: 11  AMISGLSQNSKFSEAIRTFCGMRICGEVPT-QFAFSSAIRACASLGSIEMGKQMHCLALK 69

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G   +L++ + +  M+ +CG M DA ++F+EMP ++ VS   +I G    G++ EA L 
Sbjct: 70  FGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLA 129

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F  + +E          + + A   L+    G+ +HS  +K+GF  ++FV  AL DMYSK
Sbjct: 130 FKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSK 189

Query: 279 CGSIEDAQGVFDEMSE-KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
            G +E A  VF   SE +  V +  +I GY      E+ L ++ E+R  G++ + FTFS 
Sbjct: 190 AGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSS 249

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           +I+ C   A+LE   Q HA +++  F  D   +S LVD Y K G +E A   FD++    
Sbjct: 250 LIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPT 309

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
            I+WN+L++ +G HG G++A+++FE+M+  G++PN +TF+++L+ CS +GL E G + F 
Sbjct: 310 EIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFY 369

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
           SM + + + P   HY+C+I+LLGR G L EA   I   PF+     W + L ACR++G+ 
Sbjct: 370 SMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDK 429

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
           E+GK AAEKL  +EP+     V+L NIY +  + ++   V   +R   ++ LP  SW++V
Sbjct: 430 EMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDV 489

Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHS 636
             + HVF + D SH +   IY K+D ++ +I   GYVP   ++  D+D+  ++++L  HS
Sbjct: 490 GYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHS 549

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           E++AVAF LI+     P+ + ++ R+C DCH+AIK I+ VTGR+I+VRD SRFHHF DG 
Sbjct: 550 ERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGS 609

Query: 697 CSCGDYW 703
           CSCGDYW
Sbjct: 610 CSCGDYW 616



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 133/310 (42%), Gaps = 41/310 (13%)

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M ++  V W  +I+G + +    EA+  +  MR  G     F FS  IR C  L S+E  
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           KQ H   ++ G G ++   S L D YSK G + DA  VF++M CK+ +SW A+I GY   
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G  EEA+  F++M+   +  +     + L AC      + G  +  S+ +          
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK---------- 170

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
                  LG                F++   +  AL       G++E    +A  ++G++
Sbjct: 171 -------LG----------------FESDIFVGNALTDMYSKAGDME----SASNVFGID 203

Query: 532 PE--KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM--LPACSWIEVKKQPHVFLSG 587
            E   + +Y  L++ Y  + ++++   V   LRR+G+        S I+          G
Sbjct: 204 SECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQG 263

Query: 588 DQSHVQTKEI 597
            Q H Q  +I
Sbjct: 264 TQLHAQVMKI 273


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/603 (38%), Positives = 358/603 (59%), Gaps = 8/603 (1%)

Query: 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP 163
           L LN+   EAL+LF       G  +  STY  +I  C  L+ +   +++ S +L  GF  
Sbjct: 277 LQLNECELEALQLFHESRATMG-KMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHL 335

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFD-EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL 222
              +   +   + +CG + DA  +F      RN+VS   II+G I +GD   A +LF  +
Sbjct: 336 TGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRM 395

Query: 223 WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
            E+       T++ M++AS  +    +  Q+H+  +K  +    FV  AL+  YSK GS 
Sbjct: 396 REDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTNYQHIPFVGTALLASYSKFGST 451

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           EDA  +F  + +K  V W+ +++ +A  G  E A  L+ +M   G+K + FT S +I  C
Sbjct: 452 EDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDAC 511

Query: 343 T-RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
               A ++  +Q HA  +++ +   I  +SALV  YS+ G I+ A+ VF++   ++++SW
Sbjct: 512 ACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSW 571

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           N++I+GY  HG   +A+E F QM  +G++ + VTFLAV+  C+ +GL   G + F SM R
Sbjct: 572 NSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVR 631

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           DHKI P   HYACM++L  R G LDE  +LIR  PF     +W  LL ACRV+ N+ELGK
Sbjct: 632 DHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGK 691

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
           F+A+KL  +EP   S YV+L NIY ++GK KE  EV + +  + ++    CSWI++K + 
Sbjct: 692 FSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKV 751

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLA 640
           H F++ D+SH  + +IY+K+  ++  + + GY P    +L D+ E Q++ +L  HSE+LA
Sbjct: 752 HSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLA 811

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AFGLI T   TPLQIV++ R+C DCH  +K+++M+  REI++RD SRFHHF  G CSCG
Sbjct: 812 LAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCG 871

Query: 701 DYW 703
           D+W
Sbjct: 872 DFW 874



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 185/333 (55%), Gaps = 3/333 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFE-PDLYMRNR 170
           E L+ F +    GG  V S+T   ++ AC  +      +++    +  G +  ++     
Sbjct: 82  EVLDQFSVAR-RGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTS 140

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ M+++CG + +   +F+ MP++N+V+   ++ G   +  + E   LF  +  E     
Sbjct: 141 LVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPN 200

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             TFA+++ A A    + +G+++H+ ++K G   +VFV  +L++MY+KCG +EDA+ VF+
Sbjct: 201 PFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFN 260

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            M  +  V WNT++AG  L+    EAL L++E R +  KM   T++ +I++C  L  L  
Sbjct: 261 WMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLAL 320

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-CKNVISWNALIAGYG 409
           A+Q H+ +++HGF L     +AL D YSK G + DA ++F      +NV+SW A+I+G  
Sbjct: 321 ARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCI 380

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
            +G    AV LF +M  + + PN  T+ A+L A
Sbjct: 381 QNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 153/339 (45%), Gaps = 3/339 (0%)

Query: 184 ARRLFDEMPERNL-VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
           AR   DE+P R+  V  N ++      G  LE    F           S T + +++A  
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 243 GLELISVGKQLHSCALKMGFG-DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
            +    +G+QLH   +K G     V    +L+DMY KCGS+ +   VF+ M +K  V W 
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           +++ G A      E + L++ MR  G+  + FTF+ ++       +L+  ++ HA  V+ 
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKF 230

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           G    +   ++L++ Y+K G +EDA+ VF+ M  ++++SWN L+AG   +    EA++LF
Sbjct: 231 GCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLF 290

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
            +      +    T+  V+  C+         ++  S    H           + +   +
Sbjct: 291 HESRATMGKMTQSTYATVIKLCANLKQLALARQL-HSCVLKHGFHLTGNVMTALADAYSK 349

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
            G L +A  +            W A+++ C  NG++ L 
Sbjct: 350 CGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/583 (37%), Positives = 354/583 (60%), Gaps = 10/583 (1%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           S++   I AC  L  I   K+        G++ D+++ + +++M+  CG + DAR++FDE
Sbjct: 77  SSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDE 136

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF------ATMIRASAGL 244
           +P+RN+VS   +I G   +G+ L+A  LF DL  E +D  +  F       ++I A + +
Sbjct: 137 IPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRV 196

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG--SIEDAQGVFDEMSEKTTVGWNT 302
               + + +HS  +K GF   V V   L+D Y+K G   +  A+ +FD++ +K  V +N+
Sbjct: 197 AAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256

Query: 303 IIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           I++ YA  G S EA D++  + ++  V  +  T S ++   +   +L   K  H  ++R 
Sbjct: 257 IMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRM 316

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           G   D++  ++++D Y K GR+E AR  FD+M  KNV SW A+IAGYG HG   +A+ELF
Sbjct: 317 GLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELF 376

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
             M+ +G+RPN++TF++VL+ACS +GL + GW  F +M     ++P   HY CM++LLGR
Sbjct: 377 PAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGR 436

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
            G L +A+ LI+    +    +W++LL ACR++ N+EL + +  +L+ ++P     Y++L
Sbjct: 437 AGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLL 496

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV 601
            +IY  SG+ K+   V  T++ +GL   P  S +E+  + HVFL GD+ H Q ++IY  +
Sbjct: 497 SHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFL 556

Query: 602 DRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSH 660
             +  ++ + GYV    ++  DVDE+E+ + L  HSEKLA+AFG++NT   + + +V++ 
Sbjct: 557 AELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNL 616

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           R+C DCHN IKLI+ +  RE VVRDA RFHHFKDG CSCGDYW
Sbjct: 617 RVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 199/422 (47%), Gaps = 47/422 (11%)

Query: 187 LFDEMPER-NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
           LF+   ++ ++ S N +IA +  SGD  EA   F  + +        +F   I+A + L 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLL 90

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
            I  GKQ H  A   G+  ++FVS ALI MYS CG +EDA+ VFDE+ ++  V W ++I 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150

Query: 306 GYALHGYSEEALDLYYEM------RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           GY L+G + +A+ L+ ++       D+ + +D      +I  C+R+A+    +  H+ ++
Sbjct: 151 GYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVI 210

Query: 360 RHGFGLDIVANSALVDFYSKWGR--IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           + GF   +   + L+D Y+K G   +  AR +FD+++ K+ +S+N++++ Y   G   EA
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270

Query: 418 VELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSR--------------- 461
            ++F +++   +   N +T   VL A S SG    G  I   + R               
Sbjct: 271 FDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIID 330

Query: 462 ---------------DHKIKPRAMHYACMIELLGREGLLDEAFALIRG---APFKTTKNM 503
                          D         +  MI   G  G   +A  L      +  +     
Sbjct: 331 MYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYIT 390

Query: 504 WAALLTACRVNGNLELGKF---AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560
           + ++L AC   G  ++G     A +  +G+EP  L +Y  ++++   +G L++A ++I+ 
Sbjct: 391 FVSVLAACSHAGLHDVGWHWFNAMKGRFGVEP-GLEHYGCMVDLLGRAGFLQKAYDLIQK 449

Query: 561 LR 562
           ++
Sbjct: 450 MK 451



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 96/212 (45%), Gaps = 12/212 (5%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA ++F  L  E        T   ++ A     ++R  K +   ++  G E D+ +   +
Sbjct: 269 EAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSI 328

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG +  AR  FD M  +N+ S   +IAG    G   +A    L+L+    D G 
Sbjct: 329 IDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKA----LELFPAMIDSGV 384

Query: 232 R----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS--CALIDMYSKCGSIEDA 285
           R    TF +++ A +   L  VG    + A+K  FG    +     ++D+  + G ++ A
Sbjct: 385 RPNYITFVSVLAACSHAGLHDVGWHWFN-AMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA 443

Query: 286 QGVFDEMS-EKTTVGWNTIIAGYALHGYSEEA 316
             +  +M  E  ++ W++++A   +H   E A
Sbjct: 444 YDLIQKMKMEPDSIIWSSLLAACRIHKNVELA 475


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/608 (37%), Positives = 361/608 (59%), Gaps = 8/608 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N +  E  E+F  ++   G      T+ ++I +C  LR +  VK +    L 
Sbjct: 265 SMIAGYVRNGQDLEVFEIFNKMQL-AGVKPTHMTFASVIKSCASLRELALVKLMQCKALK 323

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE-RNLVSCNMIIAGMIDSGDYLEAFL 217
           +GF  D  +   +++   +C  M DA  LF  M E +N+VS   +I+G + +G   +A  
Sbjct: 324 SGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVN 383

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           LF  +  E       T++ ++     + +     ++H+  +K  +  +  V  AL+D Y 
Sbjct: 384 LFSQMRREGVKPNHFTYSAILTVHYPVFV----SEMHAEVIKTNYERSSSVGTALLDAYV 439

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           K G+  DA  VF+ +  K  + W+ ++AGYA  G +EEA  L++++   G+K + FTFS 
Sbjct: 440 KLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSS 499

Query: 338 IIRIC-TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
           +I  C +  A+ E  KQ HA  ++      +  +SALV  Y+K G I+ A  VF +   +
Sbjct: 500 VINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKER 559

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           +++SWN++I+GY  HG+ ++A+E+F++M    M  + VTF+ V++AC+ +GL E+G + F
Sbjct: 560 DLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYF 619

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
            SM  DH I P   HY+CMI+L  R G+L++A  +I   PF     +W  LL A RV+ N
Sbjct: 620 NSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRN 679

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
           +ELG+ AAEKL  ++PE  + YV+L N+Y ++G  +E   V + + ++ ++  P  SWIE
Sbjct: 680 VELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIE 739

Query: 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYH 635
           VK + + FL+GD +H  + +IY K+  + + +   GY P+ K +  D+ DEQ++ +LS+H
Sbjct: 740 VKNKTYSFLAGDLTHPLSNQIYSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHH 799

Query: 636 SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
           SE+LA+AFGLI T    P+QIV++ R+C DCHN  KL+++V  R IVVRD++RFHHFKDG
Sbjct: 800 SERLAIAFGLIATPPEIPIQIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDG 859

Query: 696 MCSCGDYW 703
           +CSCGDYW
Sbjct: 860 LCSCGDYW 867



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 131/463 (28%), Positives = 226/463 (48%), Gaps = 44/463 (9%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           +K+ +EAL LF  L          ST   + + C G    +  ++V    +  G    + 
Sbjct: 71  DKQTKEALNLFVSL-LHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVKFGLVDHVS 129

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   ++ M+++   + D RR+FDEM ERN+VS   ++AG   +G Y   + LF  +  E 
Sbjct: 130 VGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEG 189

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 T +T+I A     ++ +G Q+H+  +K GF + + V  +LI +YS+ G + DA+
Sbjct: 190 VLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDAR 249

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VFD+M  +  V WN++IAGY  +G   E  +++ +M+ +GVK  H TF+ +I+ C  L 
Sbjct: 250 DVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLR 309

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALI 405
            L   K      ++ GF  D +  +AL+   SK   ++DA  +F  M   KNV+SW A+I
Sbjct: 310 ELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMI 369

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
           +G   +G  ++AV LF QM   G++PNH T+ A+L+                        
Sbjct: 370 SGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT------------------------ 405

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
               +HY   +          E  A +    ++ + ++  ALL A    GN       A 
Sbjct: 406 ----VHYPVFV---------SEMHAEVIKTNYERSSSVGTALLDAYVKLGN----TIDAV 448

Query: 526 KLYG-MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           K++  +E + L  +  +L  Y  +G+ +EAA++   L ++G++
Sbjct: 449 KVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIK 491



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/384 (29%), Positives = 195/384 (50%), Gaps = 12/384 (3%)

Query: 184 ARRLFDEMPER--NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRAS 241
           A  LFD++P R   L   N ++          EA  LF+ L          T + +    
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
           AG     +G+Q+H   +K G  D+V V  +L+DMY K  ++ D + VFDEM E+  V W 
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWT 163

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           +++AGY+ +G      +L+ +M+  GV  + +T S +I        +    Q HA +V+H
Sbjct: 164 SLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKH 223

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           GF   I   ++L+  YS+ G + DAR VFDKM  ++ ++WN++IAGY  +G+  E  E+F
Sbjct: 224 GFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIF 283

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGW-EIFQSMSRDHKIKPRAMHYACMIELLG 480
            +M L G++P H+TF +V+ +C  + L E    ++ Q  +         +    ++  L 
Sbjct: 284 NKMQLAGVKPTHMTFASVIKSC--ASLRELALVKLMQCKALKSGFTTDQIVITALMVALS 341

Query: 481 REGLLDEAFALIRGAPFKTTKNM--WAALLTACRVNG--NLELGKFAAEKLYGMEPEKLS 536
           +   +D+A +L   +  +  KN+  W A+++ C  NG  +  +  F+  +  G++P   +
Sbjct: 342 KCKEMDDALSLF--SLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFT 399

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRT 560
            Y  +L ++      +  AEVI+T
Sbjct: 400 -YSAILTVHYPVFVSEMHAEVIKT 422


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/621 (37%), Positives = 360/621 (57%), Gaps = 54/621 (8%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           ++ AC  L+++ + K V    +  G  PD+++ N ++  + +CG+M +A ++F+ M  ++
Sbjct: 271 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 330

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLF-------------------------------LDLWE 224
           +VS N ++AG   SG++  AF LF                               L+L+ 
Sbjct: 331 VVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFR 390

Query: 225 EFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKM----------GFGDNVFVSC 270
           +    GS     T  +++ A A L   S G ++H+ +LK           G  +++ V  
Sbjct: 391 QMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYN 450

Query: 271 ALIDMYSKCGSIEDAQGVFDE--MSEKTTVGWNTIIAGYALHGYSEEALDLYYEM--RDS 326
           ALIDMYSKC S + A+ +FD+  + E+  V W  +I G+A +G S +AL L+ EM     
Sbjct: 451 ALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 510

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG---FGLDIVANSALVDFYSKWGRI 383
           GV  + +T S I+  C  LA++   KQ HA ++RH         VAN  L+D YSK G +
Sbjct: 511 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVAN-CLIDMYSKCGDV 569

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           + ARHVFD M  K+ ISW +++ GYG HGRG EA+++F++M   G  P+ +TFL VL AC
Sbjct: 570 DTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYAC 629

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S  G+ ++G   F SMS D+ + PRA HYAC I+LL R G LD+A+  ++  P + T  +
Sbjct: 630 SHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVV 689

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           W ALL+ACRV+ N+EL + A  KL  M  E   +Y ++ NIY ++G+ K+ A +   +++
Sbjct: 690 WVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKK 749

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
            G++  P CSW++ +K    F  GD+SH  + +IY  ++ ++  I   GYVPE    L D
Sbjct: 750 SGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHD 809

Query: 624 VDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           VDE+E+  +L  HSEKLA+A+GL+ TS   P++I ++ R+C DCH+A   I+ +   EIV
Sbjct: 810 VDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIV 869

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           VRD SRFHHFK+G CSCG YW
Sbjct: 870 VRDPSRFHHFKNGSCSCGGYW 890



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 172/364 (47%), Gaps = 32/364 (8%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGF-----------------EPDLYM 167
           G DV  S + +L+  C   +S   V ++   ++++G                  EP +  
Sbjct: 32  GVDVYPSHFASLLKEC---KSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISP 88

Query: 168 RN---RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           R+    V+  ++ CG    A  + + +     V  N++I   I  G    A  +   +  
Sbjct: 89  RSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLR 148

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
             +     T   +++A   L     G   H      GF  NVF+  AL+ MYS+CGS+E+
Sbjct: 149 AGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEE 208

Query: 285 AQGVFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEM------RDSGVKMDHFTF 335
           A  +FDE++++     + WN+I++ +     +  ALDL+ +M      + +  + D  + 
Sbjct: 209 ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISI 268

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
             I+  C  L ++   K+ H   +R+G   D+   +AL+D Y+K G +E+A  VF+ M  
Sbjct: 269 VNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEF 328

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           K+V+SWNA++AGY   G  E A ELF+ M    +  + VT+ AV++  S+ G S     +
Sbjct: 329 KDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNL 388

Query: 456 FQSM 459
           F+ M
Sbjct: 389 FRQM 392



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 16/226 (7%)

Query: 111 REALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG-FEPDLY-M 167
            +AL+LF E++    G    + T   ++ AC  L +IR  K++ +Y+L    +E   Y +
Sbjct: 496 NDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFV 555

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            N ++ M+ +CG +  AR +FD M +++ +S   ++ G    G   EA    LD++++  
Sbjct: 556 ANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEA----LDIFDKMR 611

Query: 228 DCG----SRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
             G      TF  ++ A +   ++  G     S +   G           ID+ ++ G +
Sbjct: 612 KAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRL 671

Query: 283 EDAQGVFDEMS-EKTTVGWNTIIAGYALHG---YSEEALDLYYEMR 324
           + A     +M  E T V W  +++   +H     +E AL+   EM 
Sbjct: 672 DKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMN 717


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/611 (37%), Positives = 354/611 (57%), Gaps = 10/611 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I    +++R  EA  +F+ ++ EG       T+ +++ AC+   +++  K V   +  
Sbjct: 81  SMISAYSISERSGEAFFIFQRMQHEGE-RCDRVTFLSILDACVNPENLQHGKHVRESISE 139

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           T FE DL++   ++ M+ RC    +A ++F  M ++NL++ + II    D G   EA   
Sbjct: 140 TSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRY 199

Query: 219 FLDLWEEFSDCGSRTFATMIRA---SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
           F  + +E       TF +++      +GLE +S   ++H    + G  D   +S AL+++
Sbjct: 200 FRMMQQEGILPNRVTFISLLNGFTTPSGLEELS---RIHLLITEHGLDDTTTMSNALVNV 256

Query: 276 YSKC--GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           Y +C  G ++ A+ +  EM E+    WN +I GY LHG S EAL+ Y  ++   + +D  
Sbjct: 257 YGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIPVDKV 316

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           TF  ++  CT   SL   K  H+  V  G   D++  +AL + YSK G +E+AR +FD M
Sbjct: 317 TFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSM 376

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             ++ +SWN ++  Y  HG  EE ++L  +M   G++ N +TF++VLS+CS +GL   G 
Sbjct: 377 PIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGC 436

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           + F S+  D  I+ +  HY C+++LLGR G L EA   I   P +     WA+LL ACRV
Sbjct: 437 QYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLGACRV 496

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACS 573
           + +L+ GK AA KL  ++P   S  VVL NIY+  G  K AA++ R +  + ++ +P  S
Sbjct: 497 HKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGIS 556

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVL 632
            I+VK + H F   D SH +  EIY KV+ +   + + GYVP+ K +L DVD EQ++ +L
Sbjct: 557 SIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLL 616

Query: 633 SYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHF 692
           +YHSEKLA+AFGLI+T + + L I ++ R+C DCH A K I+ +TGREIVVRD  RFHHF
Sbjct: 617 AYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHF 676

Query: 693 KDGMCSCGDYW 703
           +DG CSC DYW
Sbjct: 677 RDGSCSCKDYW 687



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 169/341 (49%), Gaps = 43/341 (12%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           TF  ++ +    + +  GK +HSC  +     +VFV+ AL++ Y+KCGS+ DA+ VFD M
Sbjct: 12  TFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGM 71

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
             ++   WN++I+ Y++   S EA  ++  M+  G + D  TF  I+  C    +L+H K
Sbjct: 72  PCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGK 131

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
                +    F LD+   +AL+  Y++    E+A  VF +M  KN+I+W+A+I  + +HG
Sbjct: 132 HVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHG 191

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSA-CSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
              EA+  F  M   G+ PN VTF+++L+   + SGL E        +SR H        
Sbjct: 192 HCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEE--------LSRIH-------- 235

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK--LYG 529
                 LL  E  LD+            T  M  AL+    V G  E G+    +  L  
Sbjct: 236 ------LLITEHGLDD------------TTTMSNALVN---VYGRCETGELDVAEVILQE 274

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLP 570
           M+ ++++ + VL+N Y   G+ +EA E   T +R  L  +P
Sbjct: 275 MDEQQITAWNVLINGYTLHGRSREALE---TYQRLQLEAIP 312



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 5/242 (2%)

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           GVK +  TF  ++       +L   K  H+ +      LD+  N+ALV+ Y+K G + DA
Sbjct: 5   GVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDA 64

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           R VFD M C++V +WN++I+ Y    R  EA  +F++M   G R + VTFL++L AC   
Sbjct: 65  RKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNP 124

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
              + G  + +S+S +   +        +I +  R    + A A + G   +     W+A
Sbjct: 125 ENLQHGKHVRESIS-ETSFELDLFVGTALITMYARCRSPENA-AQVFGRMKQKNLITWSA 182

Query: 507 LLTACRVNGNL--ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           ++TA   +G+    L  F   +  G+ P +++ ++ LLN + +   L+E + +   +   
Sbjct: 183 IITAFADHGHCGEALRYFRMMQQEGILPNRVT-FISLLNGFTTPSGLEELSRIHLLITEH 241

Query: 565 GL 566
           GL
Sbjct: 242 GL 243


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/621 (37%), Positives = 360/621 (57%), Gaps = 54/621 (8%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           ++ AC  L+++ + K V    +  G  PD+++ N ++  + +CG+M +A ++F+ M  ++
Sbjct: 278 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 337

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLF-------------------------------LDLWE 224
           +VS N ++AG   SG++  AF LF                               L+L+ 
Sbjct: 338 VVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFR 397

Query: 225 EFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKM----------GFGDNVFVSC 270
           +    GS     T  +++ A A L   S G ++H+ +LK           G  +++ V  
Sbjct: 398 QMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYN 457

Query: 271 ALIDMYSKCGSIEDAQGVFDE--MSEKTTVGWNTIIAGYALHGYSEEALDLYYEM--RDS 326
           ALIDMYSKC S + A+ +FD+  + E+  V W  +I G+A +G S +AL L+ EM     
Sbjct: 458 ALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 517

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG---FGLDIVANSALVDFYSKWGRI 383
           GV  + +T S I+  C  LA++   KQ HA ++RH         VAN  L+D YSK G +
Sbjct: 518 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVAN-CLIDMYSKCGDV 576

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           + ARHVFD M  K+ ISW +++ GYG HGRG EA+++F++M   G  P+ +TFL VL AC
Sbjct: 577 DTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYAC 636

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S  G+ ++G   F SMS D+ + PRA HYAC I+LL R G LD+A+  ++  P + T  +
Sbjct: 637 SHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVV 696

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           W ALL+ACRV+ N+EL + A  KL  M  E   +Y ++ NIY ++G+ K+ A +   +++
Sbjct: 697 WVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKK 756

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
            G++  P CSW++ +K    F  GD+SH  + +IY  ++ ++  I   GYVPE    L D
Sbjct: 757 SGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHD 816

Query: 624 VDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           VDE+E+  +L  HSEKLA+A+GL+ TS   P++I ++ R+C DCH+A   I+ +   EIV
Sbjct: 817 VDEEEKNNLLVEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIV 876

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           VRD SRFHHFK+G CSCG YW
Sbjct: 877 VRDPSRFHHFKNGSCSCGGYW 897



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 172/364 (47%), Gaps = 32/364 (8%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGF-----------------EPDLYM 167
           G DV  S + +L+  C   +S   V ++   ++++G                  EP +  
Sbjct: 39  GVDVYPSHFASLLKEC---KSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISP 95

Query: 168 RN---RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           R+    V+  ++ CG    A  + + +     V  N++I   I  G    A  +   +  
Sbjct: 96  RSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLR 155

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
             +     T   +++A   L     G   H      GF  NVF+  AL+ MYS+CGS+E+
Sbjct: 156 AGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEE 215

Query: 285 AQGVFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEM------RDSGVKMDHFTF 335
           A  +FDE++++     + WN+I++ +     +  ALDL+ +M      + +  + D  + 
Sbjct: 216 ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISI 275

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
             I+  C  L ++   K+ H   +R+G   D+   +AL+D Y+K G +E+A  VF+ M  
Sbjct: 276 VNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEF 335

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           K+V+SWNA++AGY   G  E A ELF+ M    +  + VT+ AV++  S+ G S     +
Sbjct: 336 KDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNL 395

Query: 456 FQSM 459
           F+ M
Sbjct: 396 FRQM 399



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 103/226 (45%), Gaps = 16/226 (7%)

Query: 111 REALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG-FEPDLY-M 167
            +AL+LF E++    G    + T   ++ AC  L +IR  K++ +Y+L    +E   Y +
Sbjct: 503 NDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFV 562

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            N ++ M+ +CG +  AR +FD M +++ +S   ++ G    G   EA    LD++++  
Sbjct: 563 ANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEA----LDIFDKMR 618

Query: 228 DCG----SRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
             G      TF  ++ A +   ++  G     S +   G           ID+ ++ G +
Sbjct: 619 KAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRL 678

Query: 283 EDAQGVFDEMS-EKTTVGWNTIIAGYALHG---YSEEALDLYYEMR 324
           + A     +M  E T V W  +++   +H     +E AL+   EM 
Sbjct: 679 DKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMN 724


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/595 (36%), Positives = 369/595 (62%), Gaps = 3/595 (0%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           REA+ LF  ++ E G+     T+ A+++A I L  I   ++V  +++   F  ++++ N 
Sbjct: 281 REAINLFFKMQ-EVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANA 339

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           +L  + +   +++A +LF EMPE + +S N+++     +G   E+  LF +L     D  
Sbjct: 340 LLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRR 399

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           +  FAT++  +A    + +G+Q+HS  +       + V  +L+DMY+KCG   +A  +F 
Sbjct: 400 NFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFS 459

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           +++ +++V W  +I+ Y   G  E+ L L+ EM+ + +  D  T++ I+R C  LASL  
Sbjct: 460 DLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLASLTL 519

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            KQ H+ ++  G+  ++ + SALVD Y+K G I+DA  +F +M  +N +SWNALI+ Y  
Sbjct: 520 GKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQ 579

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           +G G+  + LFE+M+ +G++P+ V+ L++L ACS  GL E G + F SM+R +K+ P+  
Sbjct: 580 NGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKE 639

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HYA  I++L R G  DEA  L+   PF+  + MW+++L +C ++ N EL K AA +L+ M
Sbjct: 640 HYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNM 699

Query: 531 EP-EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           +     + YV + NIY ++G+     +V + +R +G++ +PA SW+E+K + HVF + D+
Sbjct: 700 KVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDK 759

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINT 648
           +H Q +EI +K+D +  ++ K GY P+    L +VDE+ +   L YHSE++A+AF LI+T
Sbjct: 760 THPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFALIST 819

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            + +P+ ++++ R C DCH AIK+I+ +  REI VRD+SRFHHF+DG C+C DYW
Sbjct: 820 PEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTCRDYW 874



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 173/322 (53%), Gaps = 31/322 (9%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGD---- 211
           ++ TGF P+ Y  N ++   ++ G +  AR+LFDEMP +N+ S N +I G I SG+    
Sbjct: 92  IIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEA 151

Query: 212 ---------------------------YLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
                                      + EAF LF+++     D    + AT++      
Sbjct: 152 RTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEF 211

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
           + ++  +Q+HS  +K+G+   + VS +L+D Y K  S+  A  +F+++ E+ +V +N ++
Sbjct: 212 DSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALL 271

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
            GY+  G++ EA++L+++M++ G +   FTF+ I+    +L  +E  +Q H  +V+  F 
Sbjct: 272 TGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFV 331

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            ++   +AL+DFYSK  R+ +A  +F +M   + IS+N L+  Y  +GR +E++ELF+++
Sbjct: 332 WNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKEL 391

Query: 425 LLNGMRPNHVTFLAVLSACSRS 446
              G    +  F  +LS  + S
Sbjct: 392 QFTGFDRRNFPFATLLSIAAIS 413



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 13/158 (8%)

Query: 327 GVKMDHFTFSM---IIRICTR-LASLEHAKQAH----AGLVRHGFGLDIVANSALVDFYS 378
           G K    T S+   II+ CTR L +   A + H    A +++ GF  +   ++ LV  + 
Sbjct: 53  GSKQYELTLSLMNNIIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFL 112

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
           + G +  AR +FD+M  KN+ S N +I GY   G   EA  LF+ M     +   VT+  
Sbjct: 113 QRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMF----QRTAVTWTM 168

Query: 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
           ++   +++      + +F  M R H I P  +  A ++
Sbjct: 169 LIGGYAQNNQFREAFGLFIEMGR-HGIDPDHVSLATLL 205


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/569 (38%), Positives = 353/569 (62%), Gaps = 1/569 (0%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           ++  C   + + + K   + +L  G + DL   N ++ M+ +CG +  AR++FDEMP R+
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
           LVS N +I  +  +G+  EA  L L +  E +     T ++++ A A    +S  + LH+
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
            A+K     NVFV+ AL+D+Y+KCG ++DA  VF+ M +++ V W+++ AGY  +   E+
Sbjct: 190 FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ 249

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           AL L+ +  ++G+K D F  S +I  C  LA++   KQ +A L + GF  +I   S+L+D
Sbjct: 250 ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLID 309

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            Y+K G IE++  VF  +  +NV+ WNA+I+G   H R  E + LFE+M   G+ PN VT
Sbjct: 310 MYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVT 369

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
           F++VLSAC   GL ++G + F  M+++H + P   HY+CM++ L R G + EA+ LI   
Sbjct: 370 FVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKL 429

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           PF  + +MW +LL +CR +GNLEL + AA+KL+ +EP    NY++L N+Y ++GK  E A
Sbjct: 430 PFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVA 489

Query: 556 EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
           ++ + L+   ++     SWIE+K + H+F+ G+++H +  EIY K++ +M E+ K GY  
Sbjct: 490 KMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKV 549

Query: 616 EEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
           E +  L  V E  +Q +L +HSEKLA   GL+      P++I+++ RIC DCH+ +KL +
Sbjct: 550 ETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLAS 609

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
               R+++VRD +RFHHFK+G CSCGD+W
Sbjct: 610 KFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 169/321 (52%), Gaps = 3/321 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I  L  N    EAL+L   ++ EG       T  +++ AC    ++ E + + ++ + 
Sbjct: 135 TMIGSLTQNGEENEALDLLLQMQREGT-PFSEFTISSVLCACAAKCALSECQLLHAFAIK 193

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
              + ++++   +L ++ +CG+M DA  +F+ MP+R++V+ + + AG + +  Y +A  L
Sbjct: 194 AAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALAL 253

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F   WE          +++I A AGL  +  GKQ+++   K GF  N+FV+ +LIDMY+K
Sbjct: 254 FRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAK 313

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG IE++  VF ++ ++  V WN +I+G + H  S E + L+ +M+  G+  +  TF  +
Sbjct: 314 CGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSV 373

Query: 339 IRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           +  C  +  ++  ++    + + H    ++   S +VD  S+ G+I +A  +  K+    
Sbjct: 374 LSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNA 433

Query: 398 VIS-WNALIAGYGNHGRGEEA 417
             S W +L+A    HG  E A
Sbjct: 434 SASMWGSLLASCRTHGNLELA 454


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/520 (41%), Positives = 330/520 (63%), Gaps = 1/520 (0%)

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R++FDEM ER+ VS N +I G  +   + EA  +  ++W +     + T +T++   A  
Sbjct: 124 RKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAEC 183

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             I  G  +H  A+K GF ++VFV  +LIDMY+ C  ++ +  VFD  S+   V WN+++
Sbjct: 184 ADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSML 243

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           AGYA +G  EEAL ++  M  +GV+    TFS +I     L+ L   KQ HA L+R  F 
Sbjct: 244 AGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFN 303

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            +I  +S+L+D Y K G ++ AR VF+ +   +++SW A+I GY  HG   EA  LFE+M
Sbjct: 304 DNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERM 363

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
            L  ++PNH+TFLAVL+ACS +GL + GW+ F SMS  +   P   H A + + LGR G 
Sbjct: 364 ELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGD 423

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           LDEA+  I     K T ++W+ LL ACRV+ N  L +  A+K++ +EP+ + ++V+L N+
Sbjct: 424 LDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNM 483

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           Y++SG+  EAA++ +++R KG++  PACSWIEVK + HVF++ D+SH     I   ++  
Sbjct: 484 YSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVY 543

Query: 605 MLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
             ++ + GYVP  + +L D++E+++R VL  HSEKLA+ FG+I+T   T ++++++ R+C
Sbjct: 544 SEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVC 603

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCH A K I+ +  REIVVRD +RFH FKDG CSCGD+W
Sbjct: 604 VDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 157/301 (52%), Gaps = 3/301 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           +KR++EAL +   + +  GF   + T   ++        I+    V  Y +  GF+ D++
Sbjct: 148 HKRHQEALSMVREM-WRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVF 206

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + + ++ M+  C  M  + ++FD   + + V  N ++AG   +G   EA  +F  + +  
Sbjct: 207 VGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAG 266

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 TF+++I A   L L+ +GKQLH+  ++  F DN+F+S +LIDMY KCG+++ A+
Sbjct: 267 VRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIAR 326

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VF+ +     V W  +I GYALHG + EA  L+  M    VK +H TF  ++  C+   
Sbjct: 327 RVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAG 386

Query: 347 SLEHA-KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WNAL 404
            +++  K  ++   ++GF   +   +AL D   + G +++A +   +M  K   S W+ L
Sbjct: 387 LVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTL 446

Query: 405 I 405
           +
Sbjct: 447 L 447



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 178/413 (43%), Gaps = 59/413 (14%)

Query: 210 GDYLEAFLLFLDLWEEFSDCGS--RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
           G +L A  LFL +    +   S   +    +++ AGL L ++   LH+ A++ G   + F
Sbjct: 26  GQFLHAISLFLQMRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRF 85

Query: 268 VSCALIDMYSKC---------------GSIEDA-----QGVFDEMSEKTTVGWNTIIAGY 307
            + AL+++  K                G +E A     + VFDEM E+  V WNT+I G 
Sbjct: 86  TANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGC 145

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           A H   +EAL +  EM   G   D FT S ++ I    A ++     H   +++GF  D+
Sbjct: 146 AEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDV 205

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              S+L+D Y+   +++ +  VFD     + + WN+++AGY  +G  EEA+ +F +ML  
Sbjct: 206 FVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQA 265

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR--------------DHKIK------- 466
           G+RP  VTF +++ A     L   G ++   + R              D   K       
Sbjct: 266 GVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIA 325

Query: 467 ---------PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN---MWAALLTACRVN 514
                    P  + +  MI      G   EAF L         K     + A+LTAC   
Sbjct: 326 RRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHA 385

Query: 515 GNLELG-KF--AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           G ++ G K+  +    YG  P  L +   L +    +G L EA   I  ++ K
Sbjct: 386 GLVDNGWKYFNSMSNQYGFVPS-LEHCAALADTLGRAGDLDEAYNFISEMKIK 437



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 99/206 (48%), Gaps = 3/206 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N    EAL +F  +  + G      T+ +LI A   L  +R  K++ +Y++   F  +++
Sbjct: 249 NGSVEEALGIFRRM-LQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIF 307

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + + ++ M+ +CG +  ARR+F+ +   ++VS   +I G    G   EAF+LF  +    
Sbjct: 308 ISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGN 367

Query: 227 SDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                 TF  ++ A +   L+  G K  +S + + GF  ++    AL D   + G +++A
Sbjct: 368 VKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEA 427

Query: 286 QGVFDEMSEKTTVG-WNTIIAGYALH 310
                EM  K T   W+T++    +H
Sbjct: 428 YNFISEMKIKPTSSVWSTLLRACRVH 453


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/585 (38%), Positives = 346/585 (59%), Gaps = 10/585 (1%)

Query: 120 LEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG 179
           L FE    VGS     L+     +  I + K+VF Y L    + +  M N ++   + CG
Sbjct: 168 LGFESYLLVGS----PLLYMYANVGCISDAKKVF-YGLD---DRNTVMYNSLMGGLLACG 219

Query: 180 MMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIR 239
           M+ DA +LF  M E++ VS   +I G+  +G   EA   F ++  +        F +++ 
Sbjct: 220 MIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLP 278

Query: 240 ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
           A  GL  I+ GKQ+H+C ++  F D+++V  ALIDMY KC  +  A+ VFD M +K  V 
Sbjct: 279 ACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVS 338

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           W  ++ GY   G +EEA+ ++ +M+ SG+  DH+T    I  C  ++SLE   Q H   +
Sbjct: 339 WTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAI 398

Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVE 419
             G    +  +++LV  Y K G I+D+  +F++M  ++ +SW A+++ Y   GR  E ++
Sbjct: 399 TSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQ 458

Query: 420 LFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479
           LF++M+ +G++P+ VT   V+SACSR+GL E+G   F+ M+ ++ I P   HY+CMI+L 
Sbjct: 459 LFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLF 518

Query: 480 GREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYV 539
            R G L+EA   I G PF      W  LL+ACR  GNLE+GK+AAE L  ++P   + Y 
Sbjct: 519 SRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYT 578

Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYR 599
           +L +IY S GK    A++ R +R K ++  P  SWI+ K + H F + D+S     +IY 
Sbjct: 579 LLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYA 638

Query: 600 KVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQ 658
           K++ +  +I  +GY P+   +  DV+E  + ++L+YHSE+LA+AFGLI      P+++ +
Sbjct: 639 KLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGK 698

Query: 659 SHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + R+C DCHNA K I+ VTGREI+VRDA RFH FKDG CSCGD+W
Sbjct: 699 NLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 181/357 (50%), Gaps = 6/357 (1%)

Query: 90  MKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV 149
           M+K S    + I+ L  N   +EA+E F  ++ + G  +    + +++ AC GL +I E 
Sbjct: 231 MEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQ-GLKMDQYPFGSVLPACGGLGAINEG 289

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           K++ + ++ T F+  +Y+ + ++ M+ +C  +  A+ +FD M ++N+VS   ++ G   +
Sbjct: 290 KQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQT 349

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
           G   EA  +FLD+     D    T    I A A +  +  G Q H  A+  G    V VS
Sbjct: 350 GRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVS 409

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            +L+ +Y KCG I+D+  +F+EM+ +  V W  +++ YA  G + E + L+ +M   G+K
Sbjct: 410 NSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLK 469

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDAR 387
            D  T + +I  C+R A L    Q +  L+   +G+   I   S ++D +S+ GR+E+A 
Sbjct: 470 PDGVTLTGVISACSR-AGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAM 528

Query: 388 HVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLSA 442
              + M    + I W  L++   N G  E      E ++ L+   P   T L+ + A
Sbjct: 529 RFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYA 585



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 154/365 (42%), Gaps = 52/365 (14%)

Query: 245 ELISVGKQLHSCALKMGFGD--------NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
           + I +G +  S  +KM  G+          F+   ++  Y+   S   A+ VFD + +  
Sbjct: 12  QCIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPN 71

Query: 297 TVGWNTI-------------------------------IAGYALHGYSEEALDLYYE-MR 324
              WN +                               I GY+L G    A+  Y   MR
Sbjct: 72  LFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMR 131

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           D    +   T   ++++ +    +   KQ H  +++ GF   ++  S L+  Y+  G I 
Sbjct: 132 DFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCIS 191

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           DA+ VF  +  +N + +N+L+ G    G  E+A++LF      GM  + V++ A++   +
Sbjct: 192 DAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFR-----GMEKDSVSWAAMIKGLA 246

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA---FALIRGAPFKTTK 501
           ++GL++   E F+ M +   +K     +  ++   G  G ++E     A I    F+   
Sbjct: 247 QNGLAKEAIECFREM-KVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHI 305

Query: 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            + +AL+        L   K   ++   M+ + + ++  ++  Y  +G+ +EA ++   +
Sbjct: 306 YVGSALIDMYCKCKCLHYAKTVFDR---MKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDM 362

Query: 562 RRKGL 566
           +R G+
Sbjct: 363 QRSGI 367


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/581 (37%), Positives = 343/581 (59%), Gaps = 2/581 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G  +  +TY ++++AC   +++   K + S++   G   D+ + N ++ M+ RCG +  A
Sbjct: 325 GVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKA 384

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R LF  MP+R+L+S N IIAG     D  EA  L+  +  E    G  TF  ++ A A  
Sbjct: 385 RELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANS 444

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
              + GK +H   L+ G   N  ++ AL++MY +CGS+ +AQ VF+    +  + WN++I
Sbjct: 445 SAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMI 504

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           AG+A HG  E A  L+ EM++  ++ D+ TF+ ++  C    +LE  KQ H  +   G  
Sbjct: 505 AGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQ 564

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
           LD+   +AL++ Y + G ++DAR+VF  +  ++V+SW A+I G  + G   +A+ELF QM
Sbjct: 565 LDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQM 624

Query: 425 LLNGMR-PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
              G R P+  TF ++LSAC+ +GL   G++IF SM  ++ + P   HY C++ LLGR  
Sbjct: 625 QNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRAR 684

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
              EA  LI   PF     +W  LL ACR++GN+ L + AA     +     + Y++L N
Sbjct: 685 RFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSN 744

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           +Y ++G+  + A++ R +  +G+R  P  SWIEV    H F++ D+SH +T EIY ++ R
Sbjct: 745 VYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKR 804

Query: 604 MMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           + +E+ + GY P+ + +L D+ +  Q   L  HSE+LA+A+GLI T   TP++I ++ RI
Sbjct: 805 LSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRI 864

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH A K I+ + GREI+ RD++RFH FK+G CSC DYW
Sbjct: 865 CGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 905



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/491 (27%), Positives = 239/491 (48%), Gaps = 41/491 (8%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           ++A +LFE ++   GF     TY ++++AC     +   K++ S ++  G++ D  ++N 
Sbjct: 110 KKAFQLFEEMQ-NAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNS 168

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           +L M+ +CG +  AR++F  +  R++VS N ++          E   LF  +  E     
Sbjct: 169 LLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPD 228

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             T+  ++ A     ++  GK++H   ++ G   ++ V  AL+ M  +CG ++ A+  F 
Sbjct: 229 KVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFK 288

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            ++++  V +N +IA  A HG++ EA + YY MR  GV ++  T+  I+  C+   +LE 
Sbjct: 289 GIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEA 348

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            K  H+ +   G   D+   +AL+  Y++ G +  AR +F  M  +++ISWNA+IAGY  
Sbjct: 349 GKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYAR 408

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
                EA+ L++QM   G++P  VTFL +LSAC+ S     G  I + + R   IK    
Sbjct: 409 REDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGH 467

Query: 471 HYACMIELLGREGLLDEAFALIRGAP--------------------------FKTTKN-- 502
               ++ +  R G L EA  +  G                            F+  +N  
Sbjct: 468 LANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEE 527

Query: 503 ------MWAALLTACRVNGNLELGKFAAEKLY--GMEPE-KLSNYVVLLNIYNSSGKLKE 553
                  +A++L+ C+    LELGK    ++   G++ +  L N   L+N+Y   G L++
Sbjct: 528 LEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGN--ALINMYIRCGSLQD 585

Query: 554 AAEVIRTLRRK 564
           A  V  +L+ +
Sbjct: 586 ARNVFHSLQHR 596



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 127/443 (28%), Positives = 223/443 (50%), Gaps = 13/443 (2%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           +TY AL+  C   R + E KR+ + M+  G  PD+++ N ++ M+V+C  ++DA ++F E
Sbjct: 28  ATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG----SRTFATMIRASAGLEL 246
           MP R+++S N +I+     G   +AF LF    EE  + G      T+ +++ A      
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLF----EEMQNAGFIPNKITYISILTACYSPAE 143

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           +  GK++HS  +K G+  +  V  +L+ MY KCG +  A+ VF  +S +  V +NT++  
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           YA   Y +E L L+ +M   G+  D  T+  ++   T  + L+  K+ H   V  G   D
Sbjct: 204 YAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSD 263

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           I   +ALV    + G ++ A+  F  +  ++V+ +NALIA    HG   EA E + +M  
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRS 323

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
           +G+  N  T+L++L+ACS S   E G  I   +S D       +  A +I +  R G L 
Sbjct: 324 DGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNA-LISMYARCGDLP 382

Query: 487 EAFALIRGAPFKTTKNMWAALLT--ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           +A  L    P K     W A++   A R +    +  +   +  G++P +++ ++ LL+ 
Sbjct: 383 KARELFYTMP-KRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT-FLHLLSA 440

Query: 545 YNSSGKLKEAAEVIRTLRRKGLR 567
             +S    +   +   + R G++
Sbjct: 441 CANSSAYADGKMIHEDILRSGIK 463



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/248 (29%), Positives = 124/248 (50%), Gaps = 19/248 (7%)

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
            + D  T+  +++ CTR   L  AK+ HA +V  G G DI  ++ L++ Y K   + DA 
Sbjct: 23  TETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAH 82

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
            VF +M  ++VISWN+LI+ Y   G  ++A +LFE+M   G  PN +T++++L+AC    
Sbjct: 83  QVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPA 142

Query: 448 LSERGWEIF-QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG------APFKTT 500
             E G +I  Q +   ++  PR  +   ++ + G+ G L  A  +  G        + T 
Sbjct: 143 ELENGKKIHSQIIKAGYQRDPRVQN--SLLSMYGKCGDLPRARQVFAGISPRDVVSYNTM 200

Query: 501 KNMWA--ALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVI 558
             ++A  A +  C       LG F      G+ P+K++ Y+ LL+ + +   L E   + 
Sbjct: 201 LGLYAQKAYVKEC-------LGLFGQMSSEGISPDKVT-YINLLDAFTTPSMLDEGKRIH 252

Query: 559 RTLRRKGL 566
           +    +GL
Sbjct: 253 KLTVEEGL 260


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/574 (37%), Positives = 360/574 (62%), Gaps = 4/574 (0%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           YDA I+ C+G R++RE ++V + M++ G+ P LY+  R+++M+ RCG + DA  + D MP
Sbjct: 38  YDAAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMP 97

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG-- 250
           ERN+VS   +I+G   +    EA+ LF+ +     +    T A+++ +  G + I     
Sbjct: 98  ERNVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQI 157

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           KQ+H+ A+K  F  ++FV  +L+DMY++  +I++A+ VFD +  +  V + TI++GY   
Sbjct: 158 KQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYTRL 217

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G  EEAL+L+ ++ + G++ +  TFS+++   + L+S+++ KQ H  ++R      +   
Sbjct: 218 GLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMALQ 277

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           ++L+D YSK G++  +R VFD M  ++V+SWNA++ GYG HG   E V+LF + + + ++
Sbjct: 278 NSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLF-RFMCDKVK 336

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           P+ VT LAVL   S  GL + G ++F  + ++        HY C+I+LLGR G L++A  
Sbjct: 337 PDSVTLLAVLLGYSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALL 396

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
           LI+  PF+ T+ +W +LL ACRV+ N+ +G+F A+KL+ +EPE   NYV+L NIY ++  
Sbjct: 397 LIQKMPFQPTRAIWGSLLGACRVHANVHVGEFVAQKLFDIEPENAGNYVILSNIYAAARM 456

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
            K+   + + + +K +   P  SW+ + K  H F S ++ H + ++I  K++ +   I  
Sbjct: 457 WKDVFRLRKLMLKKTVIKEPGRSWMILDKVIHTFHSSERFHPRKEDINVKINEIYAAIKA 516

Query: 611 HGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
            G+VP+   +L DV DEQ++R+L  HSEKLA+ FGL++T     +Q++++ RIC DCHN 
Sbjct: 517 AGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCHNF 576

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            K ++ V GREI +RD +RFH   +G C+CGDYW
Sbjct: 577 AKFVSKVYGREISLRDKNRFHLITEGACTCGDYW 610



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 6/203 (2%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL LF  L +  G      T+  L++A  GL S+   K+V   +L       + ++N +
Sbjct: 222 EALNLFRQL-YNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSL 280

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG ++ +RR+FD MPER++VS N ++ G    G   E   LF  + ++      
Sbjct: 281 IDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFMCDKVKPDSV 340

Query: 232 RTFATMIRASAGLELISVGKQL--HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              A ++  S G  L+  G  +  H    +    +     C +ID+  + G +E A  + 
Sbjct: 341 TLLAVLLGYSHG-GLVDEGLDMFDHIVKEQSTLLNTQHYGC-VIDLLGRSGQLEKALLLI 398

Query: 290 DEMS-EKTTVGWNTIIAGYALHG 311
            +M  + T   W +++    +H 
Sbjct: 399 QKMPFQPTRAIWGSLLGACRVHA 421


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/618 (36%), Positives = 368/618 (59%), Gaps = 16/618 (2%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +  L  N+++ EALE    +  EG  +    T  +++ AC  L  +R  K + +Y L  G
Sbjct: 270 LSSLCQNEQFLEALEYLREMVLEG-VEPDGFTISSVLPACSHLEMLRTGKELHAYALKNG 328

Query: 161 -FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
             + + ++ + ++ M+  C  ++   R+FD M +R +   N +I G   +    EA LLF
Sbjct: 329 SLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLF 388

Query: 220 LDLWEEFSD-CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           +++ E       S T A ++ A       S  + +H   +K G   + FV  AL+DMYS+
Sbjct: 389 IEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSR 448

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM---------RDSGV- 328
            G I+ A+ +F +M ++  V WNTII GY      E+AL + ++M         R S V 
Sbjct: 449 LGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVS 508

Query: 329 -KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
            K +  T   I+  C  L++L   K+ HA  +++    D+   SALVD Y+K G ++ +R
Sbjct: 509 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 568

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
            VFD++  +NVI+WN ++  YG HG  ++A+++   M++ G++PN VTF++V +ACS SG
Sbjct: 569 KVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSG 628

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK-NMWAA 506
           +   G +IF +M +D+ ++P + HYAC+++LLGR G + EA+ LI   P    K   W++
Sbjct: 629 MVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSS 688

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           LL ACR++ NLE+G+ AA+ L  +EP   S+YV+L NIY+S+G   +A EV R ++ +G+
Sbjct: 689 LLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGV 748

Query: 567 RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE 626
           R  P CSWIE   + H F++GD SH Q++++   ++ +   + K GY+P+   +L +V+E
Sbjct: 749 RKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEE 808

Query: 627 QEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
            E+ + L  HSEKLA+AFG++NTS  T +++ ++ R+C DCH A K I+ V  REI++RD
Sbjct: 809 DEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRD 868

Query: 686 ASRFHHFKDGMCSCGDYW 703
             RFHHFK+G CSCGDYW
Sbjct: 869 VRRFHHFKNGTCSCGDYW 886



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/378 (27%), Positives = 182/378 (48%), Gaps = 24/378 (6%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD-LYMRNRVLLMHVRCGMMID 183
           G    +  + AL+ A   L+ +   K++ +++   G+  D + + N ++ ++ +CG    
Sbjct: 88  GIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA 147

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDY---LEAFLLFLDLWEEFSDCGSRTFATMIRA 240
             ++FD + ERN VS N +I+ +     +   LEAF   LD   E  +  S T  ++  A
Sbjct: 148 VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD---EDVEPSSFTLVSVALA 204

Query: 241 SAGLEL---ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
            +   +   + +GKQ+H+  L+ G   N F+   L+ MY K G +  ++ +      +  
Sbjct: 205 CSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDL 263

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           V WNT+++    +    EAL+   EM   GV+ D FT S ++  C+ L  L   K+ HA 
Sbjct: 264 VTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAY 323

Query: 358 LVRHG-FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
            +++G    +    SALVD Y    ++     VFD M  + +  WNA+I GY  +   EE
Sbjct: 324 ALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEE 383

Query: 417 AVELFEQMLLN-GMRPNHVTFLAVLSACSRSGLSER-----GWEIFQSMSRDHKIKPRAM 470
           A+ LF +M  + G+  N  T   V+ AC RSG   +     G+ + + + RD  ++    
Sbjct: 384 ALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQ---- 439

Query: 471 HYACMIELLGREGLLDEA 488
               ++++  R G +D A
Sbjct: 440 --NALMDMYSRLGKIDIA 455



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 76/138 (55%), Gaps = 3/138 (2%)

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD--IVANSA 372
           EA+  Y +M   G+K D+F F  +++    L  ++  KQ HA + + G+G+D   VAN+ 
Sbjct: 76  EAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANT- 134

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           LV+ Y K G       VFD++  +N +SWN+LI+   +  + E A+E F  ML   + P+
Sbjct: 135 LVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPS 194

Query: 433 HVTFLAVLSACSRSGLSE 450
             T ++V  ACS   + E
Sbjct: 195 SFTLVSVALACSNFPMPE 212


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/535 (40%), Positives = 334/535 (62%), Gaps = 2/535 (0%)

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD-LWEEFSDC 229
           +L M+ +CG ++ A R+F+ M  RN V+ + ++ G +  G  LEAF LF D L +     
Sbjct: 274 LLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFL 333

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              + A+ +RA A L  + +GKQLH+   K G   ++    +L+ MY+K G I+ A  +F
Sbjct: 334 SPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLF 393

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           D+M  K TV ++ +++GY  +G ++EA  ++ +M+   V+ D  T   +I  C+ LA+L+
Sbjct: 394 DQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQ 453

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
           H K  H  ++  G   +    +AL+D Y+K GRI+ +R +FD M  ++++SWN +IAGYG
Sbjct: 454 HGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYG 513

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            HG G+EA  LF  M      P+ VTF+ ++SACS SGL   G   F  M+  + I PR 
Sbjct: 514 IHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRM 573

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HY  M++LL R G LDEA+  I+G P K    +W ALL ACRV+ N++LGK  +  +  
Sbjct: 574 EHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNIDLGKQVSSMIQQ 633

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           + PE   N+V+L NI++++G+  EAAEV    + +G +  P CSWIE+    H F+ GD+
Sbjct: 634 LGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEINGSLHAFIGGDR 693

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINT 648
           SH Q+ EIY+++D ++++I+K GY  +   +L DV +E++++ L YHSEKLA+AFG++  
Sbjct: 694 SHAQSSEIYQELDNILVDINKLGYRADTSFVLQDVEEEEKEKALLYHSEKLAIAFGVLTL 753

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           S+   + + ++ R+C DCH  IK + +V  R I+VRDA+RFHHFK+G CSCGD+W
Sbjct: 754 SEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/476 (25%), Positives = 228/476 (47%), Gaps = 45/476 (9%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  ++ AC  L  +R  + V  +    G   DL++   ++ ++ +C     A  +F  M
Sbjct: 131 TFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRM 190

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P R++V+ N ++AG    G Y +     L + ++ +   S T   ++   A    +S G+
Sbjct: 191 PARDVVAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNAS-TLVALLPLLAQHGALSQGR 249

Query: 252 QLHSCALKM----GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
            +H+ +++        D V V  AL+DMY+KCG +  A  VF+ M+ +  V W+ ++ G+
Sbjct: 250 AVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGF 309

Query: 308 ALHGYSEEALDLYYEMRDSGV-KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
            L G   EA  L+ +M   G+  +   + +  +R C  L+ L   KQ HA L + G   D
Sbjct: 310 VLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTD 369

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           + A ++L+  Y+K G I+ A  +FD+M+ K+ +S++AL++GY  +G+ +EA  +F +M  
Sbjct: 370 LTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQA 429

Query: 427 NGMRPNHVTFLAVLSACS-----RSGLSERGWEIFQSMSRDHKIKPRA--MHYAC----- 474
             ++P+  T ++++ ACS     + G    G  I + ++ +  I      M+  C     
Sbjct: 430 CNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDL 489

Query: 475 ------------------MIELLGREGLLDEAFAL---IRGAPFKTTKNMWAALLTACRV 513
                             MI   G  GL  EA AL   ++    +     +  L++AC  
Sbjct: 490 SRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSH 549

Query: 514 NGNLELGK----FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
           +G +  GK      A K YG+ P ++ +Y+ ++++    G L EA + I+ +  K 
Sbjct: 550 SGLVTEGKRWFHMMAHK-YGITP-RMEHYIGMVDLLARGGFLDEAYQFIQGMPLKA 603



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 166/350 (47%), Gaps = 6/350 (1%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +   VL  R  EA  LF+ +  +G   +  ++  + + AC  L  +   K++ + +  +G
Sbjct: 306 VGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSG 365

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              DL   N +L M+ + G++  A  LFD+M  ++ VS + +++G + +G   EAF +F 
Sbjct: 366 LHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFR 425

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +          T  ++I A + L  +  GK  H   +  G      +  ALIDMY+KCG
Sbjct: 426 KMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCG 485

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            I+ ++ +FD M  +  V WNT+IAGY +HG  +EA  L+ +M+    + D  TF  +I 
Sbjct: 486 RIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLIS 545

Query: 341 ICTRLASLEHAKQ-AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NV 398
            C+    +   K+  H    ++G    +     +VD  ++ G +++A      M  K +V
Sbjct: 546 ACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADV 605

Query: 399 ISWNALIAG---YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
             W AL+     + N   G++   + +Q+   G   N V    + SA  R
Sbjct: 606 RVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTG-NFVLLSNIFSAAGR 654



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 161/348 (46%), Gaps = 12/348 (3%)

Query: 178 CGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATM 237
           CG +  AR LFD++P   +   N +I      G  L   L             + TF  +
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           ++A + L  +   + +H  A + G   ++FVS AL+D+Y+KC S   A  VF  M  +  
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           V WN ++AGYALHG   + +     M+D     +  T   ++ +  +  +L   +  HA 
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLLLMQDDHAP-NASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 358 LVR----HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            VR    H     ++  +AL+D Y+K G +  A  VF+ M  +N ++W+AL+ G+   GR
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGR 314

Query: 414 GEEAVELFEQMLLNG---MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
             EA  LF+ ML  G   + P  V   + L AC+       G ++   +++   +     
Sbjct: 315 MLEAFSLFKDMLAQGLCFLSPTSVA--SALRACANLSDLCLGKQLHALLAKS-GLHTDLT 371

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
               ++ +  + GL+D+A  L      K T + ++AL++    NG  +
Sbjct: 372 AGNSLLSMYAKAGLIDQATTLFDQMVVKDTVS-YSALVSGYVQNGKAD 418



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 109/232 (46%), Gaps = 3/232 (1%)

Query: 81  KESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISAC 140
           + ++L D  + K +    + +   V N +  EA  +F  ++         +T  +LI AC
Sbjct: 388 QATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQ-ACNVQPDVATMVSLIPAC 446

Query: 141 IGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCN 200
             L +++  K     ++  G   +  + N ++ M+ +CG +  +R++FD MP R++VS N
Sbjct: 447 SHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWN 506

Query: 201 MIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ-LHSCALK 259
            +IAG    G   EA  LFLD+  +  +    TF  +I A +   L++ GK+  H  A K
Sbjct: 507 TMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHK 566

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALH 310
            G    +     ++D+ ++ G +++A      M  K  V  W  ++    +H
Sbjct: 567 YGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVH 618


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/594 (36%), Positives = 361/594 (60%), Gaps = 2/594 (0%)

Query: 111  REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
             E+ ++F  ++ EG  +    TY +++  C  LR++   +++ + +L TGF+ ++Y+ + 
Sbjct: 455  NESFKIFTQMQMEG-IEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSV 513

Query: 171  VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
            ++ M+ + G +  A ++F  + E+++VS   +IAG      + EA  LF ++ ++     
Sbjct: 514  LIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSD 573

Query: 231  SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
            +  FA+ I A AG++ ++ G+Q+H+ A   G+ D++ V  AL+ +Y++CG + DA   FD
Sbjct: 574  NIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFD 633

Query: 291  EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            ++  K  + WN++I+G+A  G+ EEAL L+ +M  +G +++ FTF   +     +A+++ 
Sbjct: 634  KIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKL 693

Query: 351  AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
             KQ HA +++ G   +   ++ L+  Y+K G I+DA   F +M  KN ISWNA++ GY  
Sbjct: 694  GKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQ 753

Query: 411  HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
            HG G +A+ LFE M   G+ PNHVTF+ VLSACS  GL + G + FQSM   H + P+  
Sbjct: 754  HGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPE 813

Query: 471  HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
            HYAC+++LLGR GLL  A   +   P +    +   LL+AC V+ N+++G+FAA  L  +
Sbjct: 814  HYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLEL 873

Query: 531  EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
            EP+  + YV+L N+Y  +GK        + ++ +G++  P  SWIEV    H F +GDQ 
Sbjct: 874  EPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQK 933

Query: 591  HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLS-YHSEKLAVAFGLINTS 649
            H    +IY  +  +    +++GY+P+  +LL D + +++      HSEKLA+AFGL++ S
Sbjct: 934  HPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLS 993

Query: 650  DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              TP+ + ++ R+C DCHN IK ++ ++ R IVVRD+ RFHHFK G+CSC DYW
Sbjct: 994  SSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 132/436 (30%), Positives = 225/436 (51%), Gaps = 11/436 (2%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T  +L+SAC  + ++   K+  SY +  G   D+ +   +L ++V+C  +  A   F   
Sbjct: 374 TVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLST 433

Query: 192 PERNLVSCNMIIA--GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
              N+V  N+++   G++D+ +  E+F +F  +  E  +    T+ +++R  + L  + +
Sbjct: 434 ETENVVLWNVMLVAYGLLDNLN--ESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDL 491

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G+Q+H+  LK GF  NV+VS  LIDMY+K G ++ A  +F  + EK  V W  +IAGYA 
Sbjct: 492 GEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQ 551

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           H    EAL+L+ EM+D G+  D+  F+  I  C  + +L   +Q HA     G+  D+  
Sbjct: 552 HEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSDDLSV 611

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            +ALV  Y++ G++ DA   FDK+  K+ ISWN+LI+G+   G  EEA+ LF QM   G 
Sbjct: 612 GNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQ 671

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD-HKIKPRAMHYACMIELLGREGLLDEA 488
             N  TF   +SA +     + G +I   + +  H  +    +   +I L  + G +D+A
Sbjct: 672 EINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSN--VLITLYAKCGNIDDA 729

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGN--LELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546
                  P K   + W A+LT    +G+    L  F   K  G+ P  ++ +V +L+  +
Sbjct: 730 ERQFFEMPEKNEIS-WNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVT-FVGVLSACS 787

Query: 547 SSGKLKEAAEVIRTLR 562
             G + E  +  +++R
Sbjct: 788 HVGLVDEGIKYFQSMR 803



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 197/369 (53%), Gaps = 1/369 (0%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   K+ S    + +  L  +    EA+ LF  +   G +      + +++SAC  +   
Sbjct: 229 DGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPT-PYIFSSVLSACTKVEFY 287

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
           +  +++   +L  GF  + Y+ N ++ ++ R G  I A ++F+ M +R+ VS N +I+G+
Sbjct: 288 KVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGL 347

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
              G   +A  LF  +  +       T A+++ A + +  + VGKQ HS A+K G   ++
Sbjct: 348 SQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDI 407

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
            +  AL+D+Y KC  I+ A   F     +  V WN ++  Y L     E+  ++ +M+  
Sbjct: 408 ILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQME 467

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           G++ + FT+  I+R C+ L +++  +Q H  +++ GF  ++  +S L+D Y+K G+++ A
Sbjct: 468 GIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHA 527

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
             +F ++  K+V+SW A+IAGY  H +  EA+ LF++M   G+  +++ F + +SAC+  
Sbjct: 528 LKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGI 587

Query: 447 GLSERGWEI 455
               +G +I
Sbjct: 588 QALNQGQQI 596



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 196/380 (51%), Gaps = 3/380 (0%)

Query: 132 TYDALISACIGLR-SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           TY  ++  C G       V+++ +  ++ G+E  L++ N ++ ++ + G +  A+++FD 
Sbjct: 171 TYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDG 230

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           + +R+ VS   +++G+  SG   EA LLF  +           F++++ A   +E   VG
Sbjct: 231 LQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVG 290

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           +QLH   LK GF    +V  AL+ +YS+ G+   A+ VF+ M ++  V +N++I+G +  
Sbjct: 291 EQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQ 350

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           GYS++AL+L+ +M    +K D  T + ++  C+ + +L   KQ H+  ++ G   DI+  
Sbjct: 351 GYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILE 410

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
            AL+D Y K   I+ A   F     +NV+ WN ++  YG      E+ ++F QM + G+ 
Sbjct: 411 GALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIE 470

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           PN  T+ ++L  CS     + G +I   + +    +      + +I++  + G LD A  
Sbjct: 471 PNQFTYPSILRTCSSLRAVDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKLGKLDHALK 529

Query: 491 LIRGAPFKTTKNMWAALLTA 510
           + R    K   + W A++  
Sbjct: 530 IFRRLKEKDVVS-WTAMIAG 548



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 124/481 (25%), Positives = 228/481 (47%), Gaps = 43/481 (8%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           E G    S TY  L+  C+      +  ++   +L  GF  ++ +  R++ +++  G + 
Sbjct: 61  ERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLD 120

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
            A  +FDEMP R L   N ++   +          LF  + +E      RT+A ++R   
Sbjct: 121 GAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCG 180

Query: 243 GLEL-ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
           G ++     +++H+  +  G+ +++FV   LID+Y K G +  A+ VFD + ++ +V W 
Sbjct: 181 GGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWV 240

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
            +++G +  G  EEA+ L+ +M  SGV    + FS ++  CT++   +  +Q H  +++ 
Sbjct: 241 AMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLVLKQ 300

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           GF L+    +ALV  YS+ G    A  VF+ ML ++ +S+N+LI+G    G  ++A+ELF
Sbjct: 301 GFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELF 360

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
           ++M L+ ++P+ VT  ++LSACS  G    G + F S +    +    +    +++L  +
Sbjct: 361 KKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ-FHSYAIKAGMSSDIILEGALLDLYVK 419

Query: 482 EGLLDEAFALIRGAPFKTTKN--MWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSN 537
              +  A           T+N  +W  +L A  +  NL      F   ++ G+EP + + 
Sbjct: 420 CSDIKTAHEFFLSTE---TENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTY 476

Query: 538 --------------------------------YV--VLLNIYNSSGKLKEAAEVIRTLRR 563
                                           YV  VL+++Y   GKL  A ++ R L+ 
Sbjct: 477 PSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKE 536

Query: 564 K 564
           K
Sbjct: 537 K 537



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 168/382 (43%), Gaps = 52/382 (13%)

Query: 219 FLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           FL L EE      S+T+  ++         S G +LH   LKMGF   V +   L+D+Y 
Sbjct: 55  FLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYI 114

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
             G ++ A  VFDEM  +    WN ++  +     +   L L+  M    VK D  T++ 
Sbjct: 115 AFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAG 174

Query: 338 IIRICTRLASLEH-AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
           ++R C       H  ++ HA  + HG+   +   + L+D Y K G +  A+ VFD +  +
Sbjct: 175 VLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKR 234

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS------------ 444
           + +SW A+++G    G  EEAV LF QM  +G+ P    F +VLSAC+            
Sbjct: 235 DSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLH 294

Query: 445 ----RSGLSERGW-------------------EIFQSMSRDHKIKPRAMHYACMIELLGR 481
               + G S   +                   ++F +M +  ++      Y  +I  L +
Sbjct: 295 GLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVS-----YNSLISGLSQ 349

Query: 482 EGLLDEAFALIRGAPFKTTKN---MWAALLTACRVNGNLELGK-FAAEKLYGMEPEKLSN 537
           +G  D+A  L +       K      A+LL+AC   G L +GK F +   Y ++    S+
Sbjct: 350 QGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHS---YAIKAGMSSD 406

Query: 538 YVV---LLNIYNSSGKLKEAAE 556
            ++   LL++Y     +K A E
Sbjct: 407 IILEGALLDLYVKCSDIKTAHE 428



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 85/200 (42%), Gaps = 1/200 (0%)

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
            ++  + M + GV+ +  T+  ++  C          + H  +++ GF  ++V    L+D
Sbjct: 52  GINFLHLMEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMD 111

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            Y  +G ++ A  VFD+M  + +  WN ++  +         + LF +ML   ++P+  T
Sbjct: 112 LYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERT 171

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
           +  VL  C    +     E   + +  H  +        +I+L  + G L+ A  +  G 
Sbjct: 172 YAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGL 231

Query: 496 PFKTTKNMWAALLTACRVNG 515
             K     W A+L+    +G
Sbjct: 232 Q-KRDSVSWVAMLSGLSQSG 250


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/628 (37%), Positives = 365/628 (58%), Gaps = 41/628 (6%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           AL+L+ ++    G    S T+  L+ +C   ++  E +++  ++L  G+EPDLY+   ++
Sbjct: 50  ALKLYVVM-ISLGLLPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLI 108

Query: 173 LMHVRCGMMIDARR-------------------------------LFDEMPERNLVSCNM 201
            M+ + G + DA +                               +FDE+P +++VS N 
Sbjct: 109 SMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNA 168

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           +I+G  ++G Y EA  LF ++ +        T  T++ A A    + +G+Q+HS     G
Sbjct: 169 MISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHG 228

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
           FG N+ +  ALID+YSKCG +E A G+F+ +S K  V WNT+I GY      +EAL L+ 
Sbjct: 229 FGSNLKIVNALIDLYSKCGQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQ 288

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN-----SALVDF 376
           EM  SG   +  T   I+  C  L +++  +  H  + +    L  V N     ++L+D 
Sbjct: 289 EMLRSGESPNDVTIVSILPACAHLGAIDIGRWIHVYIDKK---LKDVTNAPSLRTSLIDM 345

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           Y+K G IE A  VF+ ML K++ SWNA+I G+  HGR     +LF +M  NG+ P+ +TF
Sbjct: 346 YAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITF 405

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
           + +LSACS SG  + G  IF+SM++D+ I P+  HY CMI+LLG  GL  EA  +I+  P
Sbjct: 406 VGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMP 465

Query: 497 FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
            +    +W +LL ACR +GNLEL +  A  L  +EPE   +YV+L NIY ++G+  E A+
Sbjct: 466 MEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGEWDEVAK 525

Query: 557 VIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPE 616
           V   L  KG++ +P CS IE+  + H F+ GD+ H + +EIY  ++ M   + + G+VP+
Sbjct: 526 VRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEEAGFVPD 585

Query: 617 EKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAM 675
              +L +++E+ ++  L +HSEKLA+AFGLI+T   T L IV++ R+C +CH A KL++ 
Sbjct: 586 TSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLVSK 645

Query: 676 VTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +  REI+ RD +RFHHF+DG+CSC D+W
Sbjct: 646 IYKREIIARDRTRFHHFRDGVCSCNDFW 673



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 124/255 (48%), Gaps = 33/255 (12%)

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A  VF  + E   + WNT++ GYAL      AL LY  M   G+  + +TF  +++ C +
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK------------ 392
             + E  +Q H  +++ G+  D+  +++L+  Y++ GR+EDA  VFD+            
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 393 -------------------MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
                              +  K+V+SWNA+I+GY   G  +EA+ELF++M+   +RP+ 
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
            T + VLSAC++S   E G ++  S   DH           +I+L  + G ++ A  L  
Sbjct: 199 GTMVTVLSACAQSRSVELGRQV-HSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 494 GAPFKTTKNMWAALL 508
           G   K   + W  L+
Sbjct: 258 GLSCKDVVS-WNTLI 271


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/595 (36%), Positives = 366/595 (61%), Gaps = 3/595 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + +A+E++  ++   G +    T   ++ AC G+  +   KRV   +   GFE D++++N
Sbjct: 150 FGDAIEMYSRMQ-ASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQN 208

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ ++ +CG +  AR +F+ + +RN+VS   +I+G   +G  +EA  +F  + +     
Sbjct: 209 GLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKP 268

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
                 +++RA   +E +  GK +H C +KMG      +  +L  MY+KCG +  A+  F
Sbjct: 269 DWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFF 328

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           D+M     + WN +I+GYA +GY+ EA+ L+ EM    ++ D  T    I  C ++ SL+
Sbjct: 329 DQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLD 388

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
            AK     + +  +  D+  N+AL+D ++K G ++ AR VFD+ L K+V+ W+A+I GYG
Sbjct: 389 LAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYG 448

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            HGRG++A++LF  M   G+ PN VTF+ +L+AC+ SGL E GWE+F SM + + I+ R 
Sbjct: 449 LHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSM-KYYGIEARH 507

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HYAC+++LLGR G L+EA+  I   P +   ++W ALL AC++  ++ LG++AAE+L+ 
Sbjct: 508 QHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFS 567

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           ++P    +YV L N+Y SS      A+V   +R KGL      S IE+  +   F  GD+
Sbjct: 568 LDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDK 627

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINT 648
           SH + KEI+ +++ +   + + G++P  +++L D++++E +  L  HSE+LA+A+GLI+T
Sbjct: 628 SHPRFKEIFEELESLERRLKEAGFIPHIESVLHDLNQEEKEETLCNHSERLAIAYGLIST 687

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +  T L+I ++ R C +CH+A KLI+ +  REIVVRDA+RFHHFK+G+CSC DYW
Sbjct: 688 APGTTLRITKNLRACINCHSATKLISKLVNREIVVRDANRFHHFKNGVCSCRDYW 742



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/474 (26%), Positives = 229/474 (48%), Gaps = 44/474 (9%)

Query: 125 GFDVGSSTYDALISACIGLRSIREV--KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           GFD   S + +L+   +  R + ++  + V S ++ +GF     +  + +      G + 
Sbjct: 67  GFDF-DSFFSSLLDHSVHKRHLNQIHAQLVVSGLVESGF-----LVTKFVNASWNIGEIG 120

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
            AR++FDE PE ++   N II G      + +A  ++  +     +    T   +++A +
Sbjct: 121 YARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACS 180

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
           G+ ++ VGK++H    ++GF  +VFV   L+ +Y+KCG +E A+ VF+ + ++  V W +
Sbjct: 181 GVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTS 240

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I+GY  +G   EAL ++ +MR   VK D      ++R  T +  LE  K  H  +V+ G
Sbjct: 241 MISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMG 300

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
              +     +L   Y+K G++  AR  FD+M   NV+ WNA+I+GY  +G   EAV LF+
Sbjct: 301 LEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQ 360

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSG-LSERGW------------EIFQSMSR-------- 461
           +M+   +R + +T  + + AC++ G L    W            ++F + +         
Sbjct: 361 EMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCG 420

Query: 462 ---------DHKIKPRAMHYACMIELLGREGLLDEA---FALIRGAPFKTTKNMWAALLT 509
                    D  +    + ++ MI   G  G   +A   F  ++ A        +  LLT
Sbjct: 421 SVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLT 480

Query: 510 ACRVNGNLELG--KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           AC  +G +E G   F + K YG+E  +  +Y  ++++   SG L EA + I T+
Sbjct: 481 ACNHSGLVEEGWELFHSMKYYGIEA-RHQHYACVVDLLGRSGHLNEAYDFITTM 533


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/606 (38%), Positives = 356/606 (58%), Gaps = 2/606 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + +  LV N  + EA+ +F  +  +GG    S+T  A++     L+ +     +    + 
Sbjct: 177 TMVSGLVKNSCFDEAILIFGDM-VKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMK 235

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF    Y+   +  ++ +CG +  AR LF ++ + +LVS N +I+G   + +   +  L
Sbjct: 236 VGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRL 295

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F +L        S +   +I        + + + +H    K G   N  VS AL  +YS+
Sbjct: 296 FKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSR 355

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
              IE A+ +FDE SEK+   WN +I+GYA +G +E+A+ L+ EM+   V+ +  T + I
Sbjct: 356 LNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSI 415

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C +L +L   K  H  + R  F  +I  ++AL+D Y+K G I +A+ +F  M  KN 
Sbjct: 416 LSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNA 475

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           ++WNA+I+GYG HG G EA+ LF +ML + + P  VTFL+VL ACS +GL   G EIF+S
Sbjct: 476 VTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRS 535

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M  DH  +P   HYACM++LLGR G LD+A   IR  P +    +W ALL AC ++ +  
Sbjct: 536 MVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDAN 595

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           L + A++KL+ ++P+ +  YV+L NIY++     EAA V   ++R+ L   P C+ IEV 
Sbjct: 596 LARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVA 655

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVL-SYHSE 637
              H+F SGDQSH Q   IY  ++++  ++ + G+  E  T L DV+E+E+ ++   HSE
Sbjct: 656 NTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSE 715

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+AFGLI +   T ++I+++ R+C DCHNA K I+ +T R IVVRDA+RFHHFKDG+C
Sbjct: 716 KLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGIC 775

Query: 698 SCGDYW 703
           SCGDYW
Sbjct: 776 SCGDYW 781



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 212/413 (51%), Gaps = 4/413 (0%)

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           GF  DL++ + ++  + +   +  AR++FD M ER+ V  N +++G++ +  + EA L+F
Sbjct: 136 GFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIF 195

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
            D+ +      S T A ++   A L+ +++G  +   A+K+GF  + +V   L  +YSKC
Sbjct: 196 GDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKC 255

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           G IE A+ +F ++ +   V +N +I+GY  +  +E ++ L+ E+  SG K++  +   +I
Sbjct: 256 GEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLI 315

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
            +      L   +  H    + G   +   ++AL   YS+   IE AR +FD+   K++ 
Sbjct: 316 PVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLA 375

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           SWNA+I+GY  +G  E+A+ LF++M    +RPN VT  ++LSAC++ G    G  +   +
Sbjct: 376 SWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLI 435

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG-NLE 518
           +R+   +        +I++  + G + EA  L    P K     W A+++   ++G   E
Sbjct: 436 NRE-SFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVT-WNAMISGYGLHGYGHE 493

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL-RRKGLRMLP 570
                 E L+         ++ +L   + +G ++E  E+ R++    G   LP
Sbjct: 494 ALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLP 546


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/564 (38%), Positives = 343/564 (60%), Gaps = 9/564 (1%)

Query: 145  SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
            ++ +V++V       G   +L + N+++  +     + DA  LFD M  R+ VS ++++ 
Sbjct: 750  NLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVG 809

Query: 205  GMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKM 260
            G    GDY+  F  F     E   CG+R    T   +IRA   L+ + +G+ +H    K 
Sbjct: 810  GFAKVGDYMNCFGTF----RELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKF 865

Query: 261  GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY 320
            G   + FV  AL+DMY KC  IEDA+ +FD+M E+  V W  +I GYA  G + E+L L+
Sbjct: 866  GLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLF 925

Query: 321  YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380
             +MR+ GV  D      ++  C +L ++  A+     + R  F LD++  +A++D ++K 
Sbjct: 926  DKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKC 985

Query: 381  GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
            G +E AR +FD+M  KNVISW+A+IA YG HG+G +A++LF  ML +G+ PN +T +++L
Sbjct: 986  GCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLL 1045

Query: 441  SACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTT 500
             ACS +GL E G   F  M  D+ ++    HY C+++LLGR G LDEA  LI     +  
Sbjct: 1046 YACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKD 1105

Query: 501  KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560
            + +W A L ACR + ++ L + AA  L  ++P+   +Y++L NIY ++G+ ++ A++   
Sbjct: 1106 EGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDL 1165

Query: 561  LRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTL 620
            + ++ L+ +P  +WIEV  + H F  GD +H ++KEIY  +  +  ++   GYVP+   +
Sbjct: 1166 MSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFV 1225

Query: 621  LPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGR 679
            L DVDE+ +  +L  HSEKLA+AFGLI T + TP++I+++ R+C DCH   KL++ +TGR
Sbjct: 1226 LHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGR 1285

Query: 680  EIVVRDASRFHHFKDGMCSCGDYW 703
             I+VRDA+RFHHFK+G CSCGDYW
Sbjct: 1286 VIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 194/530 (36%), Positives = 313/530 (59%), Gaps = 9/530 (1%)

Query: 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL 196
           ISA +  R++ +V++V +     G   ++ + N+++  +     + DA  LFD M  R+ 
Sbjct: 66  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 125

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQ 252
           VS ++++ G    GDY+  F  F     E   CG+R    T   +IRA   L+ + +G+ 
Sbjct: 126 VSWSVMVGGFAKVGDYINCFGTF----RELIRCGARPDNYTLPFVIRACRDLKNLQMGRL 181

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H    K G   + FV  AL+DMY KC  IEDA+ +FD+M E+  V W  +I GYA  G 
Sbjct: 182 IHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGK 241

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
           + E+L L+ +MR+ GV  D      ++  C +L ++  A+     + R  F LD++  +A
Sbjct: 242 ANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTA 301

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           ++D Y+K G +E AR +FD+M  KNVISW+A+IA YG HG+G +A++LF  ML +GM P+
Sbjct: 302 MIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPD 361

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            +T  ++L ACS +GL E G   F SM  D+ ++    HY C+++LLGR G LDEA  LI
Sbjct: 362 KITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLI 421

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
           +    +  + +W A L ACR + ++ L + AA  L  ++ +   +YV+L NIY ++G+ +
Sbjct: 422 KSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWE 481

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
           + A++   + ++ L+  P  +WIEV  + H F  GD +H ++KEIY  +  +  ++   G
Sbjct: 482 DVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVG 541

Query: 613 YVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHR 661
           YVP+   +L DVDE+ +  +L  HSEKLA+AFGLI T + TP++I+++ R
Sbjct: 542 YVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPIRIIKNLR 591



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 152/325 (46%), Gaps = 25/325 (7%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T   +I AC  L++++  + +   +   G + D ++   ++ M+V+C  + DAR LFD+M
Sbjct: 162 TLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKM 221

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            ER+LV+  ++I G  + G   E+ +LF  + EE          T++ A A L  +   +
Sbjct: 222 QERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKAR 281

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            +     +  F  +V +  A+IDMY+KCG +E A+ +FD M EK  + W+ +IA Y  HG
Sbjct: 282 IIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHG 341

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL------ 365
              +ALDL+  M  SG+  D  T + ++  C+           HAGLV  G         
Sbjct: 342 QGRKALDLFPMMLSSGMLPDKITLASLLYACS-----------HAGLVEEGLRFFSSMWE 390

Query: 366 ------DIVANSALVDFYSKWGRIEDARHVFDKMLC-KNVISWNALIAGYGNHGRGEEAV 418
                 D+   + +VD   + GR+++A  +   M   K+   W A +     H     A 
Sbjct: 391 DYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAE 450

Query: 419 ELFEQML-LNGMRPNHVTFLAVLSA 442
           +    +L L    P H   L+ + A
Sbjct: 451 KAATSLLELQSQNPGHYVLLSNIYA 475



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 173/386 (44%), Gaps = 46/386 (11%)

Query: 132  TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            T   +I AC  L++++  + +   +   G + D ++   ++ M+ +C  + DAR LFD+M
Sbjct: 838  TLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKM 897

Query: 192  PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
             ER+LV+  ++I G  + G+  E+ +LF  + EE          T++ A A L  +   +
Sbjct: 898  XERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKAR 957

Query: 252  QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
             +     +  F  +V +  A+IDM++KCG +E A+ +FD M EK  + W+ +IA Y  HG
Sbjct: 958  TIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHG 1017

Query: 312  YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL------ 365
               +ALDL+  M  SG+  +  T   ++  C+           HAGLV  G         
Sbjct: 1018 QGRKALDLFPMMLRSGILPNKITLVSLLYACS-----------HAGLVEEGLRFFSXMWE 1066

Query: 366  ------DIVANSALVDFYSKWGRIEDARHVFDKMLC-KNVISWNALIAGYGNHGRGEEAV 418
                  D+   + +VD   + GR+++A  +   M   K+   W A +     H     A 
Sbjct: 1067 DYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAE 1126

Query: 419  ELFEQML-LNGMRPNHVTFLAVLSACS---------RSGLSER------GWEIFQSMSRD 462
            +    +L L    P H   L+ + A +         R  +S+R      GW   +  ++ 
Sbjct: 1127 KAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKS 1186

Query: 463  HKIK------PRAMHYACMIELLGRE 482
            H+        PR+     M++ LG +
Sbjct: 1187 HQFSVGDTTHPRSKEIYEMLKSLGNK 1212



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 50/98 (51%)

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
            +L   +Q H     HG   +++  + LV FYS +  ++DA  +FD M  ++ +SW+ ++
Sbjct: 749 TNLTQVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMV 808

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
            G+   G        F +++  G RP++ T   V+ AC
Sbjct: 809 GGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFVIRAC 846


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/618 (36%), Positives = 364/618 (58%), Gaps = 16/618 (2%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +  L  N++  EALE    +  EG  +    T  +++ AC  L  +R  K + +Y L  G
Sbjct: 274 LSSLCQNEQLLEALEYLREMVLEG-VEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 332

Query: 161 -FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
             + + ++ + ++ M+  C  ++  RR+FD M +R +   N +IAG   +    EA LLF
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 392

Query: 220 LDLWEEFSD-CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           + + E       S T A ++ A       S  + +H   +K G   + FV   L+DMYS+
Sbjct: 393 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSR 452

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-----------SG 327
            G I+ A  +F +M ++  V WNT+I GY    + E+AL L ++M++             
Sbjct: 453 LGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS 512

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           +K +  T   I+  C  L++L   K+ HA  +++    D+   SALVD Y+K G ++ +R
Sbjct: 513 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 572

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
            VFD++  KNVI+WN +I  YG HG G+EA++L   M++ G++PN VTF++V +ACS SG
Sbjct: 573 KVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSG 632

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK-NMWAA 506
           + + G  IF  M  D+ ++P + HYAC+++LLGR G + EA+ L+   P    K   W++
Sbjct: 633 MVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 692

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           LL A R++ NLE+G+ AA+ L  +EP   S+YV+L NIY+S+G   +A EV R ++ +G+
Sbjct: 693 LLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 752

Query: 567 RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE 626
           R  P CSWIE   + H F++GD SH Q++++   ++ +   + K GYVP+   +L +V+E
Sbjct: 753 RKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEE 812

Query: 627 QEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
            E+ + L  HSEKLA+AFG++NTS  T +++ ++ R+C DCH A K I+ +  REI++RD
Sbjct: 813 DEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRD 872

Query: 686 ASRFHHFKDGMCSCGDYW 703
             RFH FK+G CSCGDYW
Sbjct: 873 VRRFHRFKNGTCSCGDYW 890



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 177/360 (49%), Gaps = 18/360 (5%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD-LYMRNRVLLMHVRCGMMID 183
           G    +  + AL+ A   L+ +   K++ +++   G+  D + + N ++ ++ +CG    
Sbjct: 92  GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA 151

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDY---LEAFLLFLDLWEEFSDCGSRTFATMIRA 240
             ++FD + ERN VS N +I+ +     +   LEAF   LD   E  +  S T  +++ A
Sbjct: 152 VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD---ENVEPSSFTLVSVVTA 208

Query: 241 SAGLEL---ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
            + L +   + +GKQ+H+  L+ G   N F+   L+ MY K G +  ++ +      +  
Sbjct: 209 CSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDL 267

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           V WNT+++    +    EAL+   EM   GV+ D FT S ++  C+ L  L   K+ HA 
Sbjct: 268 VTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAY 327

Query: 358 LVRHG-FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
            +++G    +    SALVD Y    ++   R VFD M  + +  WNA+IAGY  +   +E
Sbjct: 328 ALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKE 387

Query: 417 AVELFEQMLLN-GMRPNHVTFLAVLSACSRSGLSER-----GWEIFQSMSRDHKIKPRAM 470
           A+ LF  M  + G+  N  T   V+ AC RSG   R     G+ + + + RD  ++   M
Sbjct: 388 ALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLM 447



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 3/138 (2%)

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD--IVANSA 372
           EA+  Y +M   G+K D++ F  +++    L  +E  KQ HA + + G+G+D   VAN+ 
Sbjct: 80  EAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANT- 138

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           LV+ Y K G       VFD++  +N +SWN+LI+   +  + E A+E F  ML   + P+
Sbjct: 139 LVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPS 198

Query: 433 HVTFLAVLSACSRSGLSE 450
             T ++V++ACS   + E
Sbjct: 199 SFTLVSVVTACSNLPMPE 216


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/618 (36%), Positives = 364/618 (58%), Gaps = 16/618 (2%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +  L  N++  EALE    +  EG  +    T  +++ AC  L  +R  K + +Y L  G
Sbjct: 274 LSSLCQNEQLLEALEYLREMVLEG-VEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 332

Query: 161 -FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
             + + ++ + ++ M+  C  ++  RR+FD M +R +   N +IAG   +    EA LLF
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 392

Query: 220 LDLWEEFSD-CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           + + E       S T A ++ A       S  + +H   +K G   + FV   L+DMYS+
Sbjct: 393 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSR 452

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-----------SG 327
            G I+ A  +F +M ++  V WNT+I GY    + E+AL L ++M++             
Sbjct: 453 LGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS 512

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           +K +  T   I+  C  L++L   K+ HA  +++    D+   SALVD Y+K G ++ +R
Sbjct: 513 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 572

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
            VFD++  KNVI+WN +I  YG HG G+EA++L   M++ G++PN VTF++V +ACS SG
Sbjct: 573 KVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSG 632

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK-NMWAA 506
           + + G  IF  M  D+ ++P + HYAC+++LLGR G + EA+ L+   P    K   W++
Sbjct: 633 MVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 692

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           LL A R++ NLE+G+ AA+ L  +EP   S+YV+L NIY+S+G   +A EV R ++ +G+
Sbjct: 693 LLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 752

Query: 567 RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE 626
           R  P CSWIE   + H F++GD SH Q++++   ++ +   + K GYVP+   +L +V+E
Sbjct: 753 RKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEE 812

Query: 627 QEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
            E+ + L  HSEKLA+AFG++NTS  T +++ ++ R+C DCH A K I+ +  REI++RD
Sbjct: 813 DEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRD 872

Query: 686 ASRFHHFKDGMCSCGDYW 703
             RFH FK+G CSCGDYW
Sbjct: 873 VRRFHRFKNGTCSCGDYW 890



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 177/360 (49%), Gaps = 18/360 (5%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD-LYMRNRVLLMHVRCGMMID 183
           G    +  + AL+ A   L+ +   K++ +++   G+  D + + N ++ ++ +CG    
Sbjct: 92  GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA 151

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDY---LEAFLLFLDLWEEFSDCGSRTFATMIRA 240
             ++FD + ERN VS N +I+ +     +   LEAF   LD   E  +  S T  +++ A
Sbjct: 152 VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD---ENVEPSSFTLVSVVTA 208

Query: 241 SAGLEL---ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
            + L +   + +GKQ+H+  L+ G   N F+   L+ MY K G +  ++ +      +  
Sbjct: 209 CSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDL 267

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           V WNT+++    +    EAL+   EM   GV+ D FT S ++  C+ L  L   K+ HA 
Sbjct: 268 VTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAY 327

Query: 358 LVRHG-FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
            +++G    +    SALVD Y    ++   R VFD M  + +  WNA+IAGY  +   +E
Sbjct: 328 ALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKE 387

Query: 417 AVELFEQMLLN-GMRPNHVTFLAVLSACSRSGLSER-----GWEIFQSMSRDHKIKPRAM 470
           A+ LF  M  + G+  N  T   V+ AC RSG   R     G+ + + + RD  ++   M
Sbjct: 388 ALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLM 447



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/138 (34%), Positives = 78/138 (56%), Gaps = 3/138 (2%)

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD--IVANSA 372
           EA+  Y +M   G+K D++ F  +++    L  +E  KQ HA + + G+G+D   VAN+ 
Sbjct: 80  EAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANT- 138

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           LV+ Y K G       VFD++  +N +SWN+LI+   +  + E A+E F  ML   + P+
Sbjct: 139 LVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPS 198

Query: 433 HVTFLAVLSACSRSGLSE 450
             T ++V++ACS   + E
Sbjct: 199 SFTLVSVVTACSNLPMPE 216


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/632 (36%), Positives = 371/632 (58%), Gaps = 30/632 (4%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I     N+R+ EAL    ++  EG    G  T+ +++ AC  L  +R  K + +Y L 
Sbjct: 186 SMISSFSQNERFMEALMFLRLMVLEGVKPDGV-TFASVLPACSHLDLLRTGKEIHAYALR 244

Query: 159 TG-FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
           T     + ++ + ++ M+  CG +   R +FD + +R +   N +IAG   S    +A +
Sbjct: 245 TDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALM 304

Query: 218 LFLDLWEE---FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
           LF+++      +S+  + T ++++ A    E IS  + +H   +K G   N ++  ALID
Sbjct: 305 LFIEMEAAAGLYSN--ATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALID 362

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM----------- 323
           MYS+ G I+ ++ +FD M ++  V WNTII  Y + G S +AL L +EM           
Sbjct: 363 MYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDG 422

Query: 324 -----RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378
                +    K +  T   ++  C  L++L   K+ HA  +R+     +   SALVD Y+
Sbjct: 423 DYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYA 482

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-----MRPNH 433
           K G +  AR VFD+M  +NVI+WN +I  YG HG+G+E++ELFE M+  G     ++P  
Sbjct: 483 KCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTE 542

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
           VTF+A+ ++CS SG+ + G  +F  M  +H I+P   HYAC+++L+GR G ++EA+ L+ 
Sbjct: 543 VTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVN 602

Query: 494 GAPFKTTK-NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
             P    K   W++LL ACR+  N+E+G+ AAE L  ++P+  S+YV+L NIY+S+G   
Sbjct: 603 TMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWD 662

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
           +A  + R ++  G++  P CSWIE   + H FL+GD SH Q+++++  ++ +   + K G
Sbjct: 663 KAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEG 722

Query: 613 YVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           YVP+   +L D+DE+E+  +L  HSEKLA+AFG++NT   T +++ ++ R+C DCH A K
Sbjct: 723 YVPDTACVLHDIDEEEKETILCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASK 782

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            I+ +  REI++RDA RFHHFKDG CSCGDYW
Sbjct: 783 FISKIEDREIILRDARRFHHFKDGTCSCGDYW 814



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 175/338 (51%), Gaps = 15/338 (4%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP--DLYMRNRVLLMHVRCGMMI 182
           GF   +  + A++ A  G++ +   K++ +++   G+     + + N ++ M+ +CG + 
Sbjct: 5   GFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLG 64

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
           DA ++FD + ER+ VS N II+ +    ++  A   F  +  E  +  S T  +M  A +
Sbjct: 65  DAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACS 124

Query: 243 GL---ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
            L   + + +GKQ+H C  + G     F + AL+ MY+K G ++DA+ +     ++  V 
Sbjct: 125 NLRKRDGLWLGKQIHGCCFRKGHW-RTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVT 183

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           WN++I+ ++ +    EAL     M   GVK D  TF+ ++  C+ L  L   K+ HA  +
Sbjct: 184 WNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYAL 243

Query: 360 RHGFGLDIVAN----SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
           R     D++ N    SALVD Y   G++E  R VFD +L + +  WNA+IAGY      E
Sbjct: 244 RTD---DVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDE 300

Query: 416 EAVELFEQM-LLNGMRPNHVTFLAVLSACSR-SGLSER 451
           +A+ LF +M    G+  N  T  +++ A  R  G+S +
Sbjct: 301 KALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRK 338



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/283 (28%), Positives = 143/283 (50%), Gaps = 7/283 (2%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGD--NVFVSCALIDMYSKCGSIEDAQGVFD 290
            F  +++A AG++ + +GKQ+H+   K G+G   +V +   L++MY KCG + DA  VFD
Sbjct: 12  AFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFD 71

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL---AS 347
            ++E+  V WN+II+        E A+  +  M   G +   FT   +   C+ L     
Sbjct: 72  RITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDG 131

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           L   KQ H    R G      +N+AL+  Y+K GR++DA+ +      +++++WN++I+ 
Sbjct: 132 LWLGKQIHGCCFRKGH-WRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISS 190

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           +  + R  EA+     M+L G++P+ VTF +VL ACS   L   G EI     R   +  
Sbjct: 191 FSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIE 250

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
            +   + ++++    G + E+  L+  +       +W A++  
Sbjct: 251 NSFVGSALVDMYCNCGQV-ESGRLVFDSVLDRKIGLWNAMIAG 292



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 6/132 (4%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG--LDIVANSALVDFYSKW 380
           M  SG   D+F F  +++    +  L   KQ HA + + G+G    +  ++ LV+ Y K 
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 381 GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
           G + DA  VFD++  ++ +SWN++I+        E A++ F  ML+ G  P+  T +++ 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 441 SACS----RSGL 448
            ACS    R GL
Sbjct: 121 LACSNLRKRDGL 132


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/617 (36%), Positives = 359/617 (58%), Gaps = 41/617 (6%)

Query: 89  QMKKPSAGICSQI-EKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
           ++  PS  + +QI      N  +  A++L+  +    G      TY  ++ AC GL +I 
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSM-LHLGVRPNKYTYPFVLKACSGLLAIE 126

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
           +   + S+    G E D+++   ++  + +CG++++A+RLF  M  R++V+ N +IAG  
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
             G   +A  L + + EE                                   G   N  
Sbjct: 187 LYGLCDDAVQLIMQMQEE-----------------------------------GICPN-- 209

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
            S  ++ +   C  +  A+ +FD M  +  V W+ +I GY      +EALD++  M+ SG
Sbjct: 210 -SSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSG 268

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           +  D  T   ++  C+ LA+L+H   +H  L+  GF  D +  +AL+D YSK G+I  AR
Sbjct: 269 IDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAR 328

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
            VF++M   +++SWNA+I GYG HG G EA+ LF  +L  G++P+ +TF+ +LS+CS SG
Sbjct: 329 EVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSG 388

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
           L   G   F +MSRD  I PR  H  CM+++LGR GL+DEA   IR  PF+    +W+AL
Sbjct: 389 LVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSAL 448

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           L+ACR++ N+ELG+  ++K+  + PE   N+V+L NIY+++G+  +AA +  T +  GL+
Sbjct: 449 LSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLK 508

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ 627
            +P CSWIE+    H F+ GDQSH+Q  +I RK++ +++E+ + GY  E   +  DV+E+
Sbjct: 509 KIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEE 568

Query: 628 E-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
           E +++L YHSEKLA+AFG++N     P+ + ++ R+C DCH AIK + ++T REI VRDA
Sbjct: 569 EKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDA 628

Query: 687 SRFHHFKDGMCSCGDYW 703
           +RFHHFK+G C+CGD+W
Sbjct: 629 NRFHHFKNGTCNCGDFW 645



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 211/475 (44%), Gaps = 91/475 (19%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           + Y  L+ ACI  +S+ E K++  + L      D  + +++  +++ C  ++ ARRLFDE
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLEL 246
           +P  +++  N II     +G +  A    +DL+      G R    T+  +++A +GL  
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGA----IDLYHSMLHLGVRPNKYTYPFVLKACSGLLA 124

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           I  G ++HS A   G   +VFV  AL+D Y+KCG + +AQ +F  MS +  V WN +IAG
Sbjct: 125 IEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
            +L+G  ++A+ L  +M++ G+  +  T   ++  C  L                     
Sbjct: 185 CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLY------------------- 225

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
                              AR +FD M  +N +SW+A+I GY      +EA+++F  M L
Sbjct: 226 -------------------ARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQL 266

Query: 427 NGMRPNHVTFLAVLSACS-----RSGLSERGW---------------------------- 453
           +G+ P+  T L VL ACS     + G    G+                            
Sbjct: 267 SGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISF 326

Query: 454 --EIFQSMSRDHKIKPRAMHYACMIELLGRE--GLLDEAFALIRGAPFKTTKNMWAALLT 509
             E+F  M R   +   AM     I  LG E  GL  +  AL      K     +  LL+
Sbjct: 327 AREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLAL----GLKPDDITFICLLS 382

Query: 510 ACRVNGNLELGKF---AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           +C  +G +  G+    A  + + + P ++ + + +++I   +G + EA   IR +
Sbjct: 383 SCSHSGLVMEGRLWFDAMSRDFSIVP-RMEHCICMVDILGRAGLIDEAHHFIRNM 436



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 159/322 (49%), Gaps = 8/322 (2%)

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           ++  K++H   LK     +  V   L  +Y  C  +  A+ +FDE+   + + WN II  
Sbjct: 24  LTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSVILWNQIIRA 83

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           YA +G  + A+DLY+ M   GV+ + +T+  +++ C+ L ++E   + H+     G   D
Sbjct: 84  YAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESD 143

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +   +ALVDFY+K G + +A+ +F  M  ++V++WNA+IAG   +G  ++AV+L  QM  
Sbjct: 144 VFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQE 203

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
            G+ PN  T + VL  C +  L  R  +IF  M   +++   AM    +     +E L  
Sbjct: 204 EGICPNSSTIVGVLPTC-QCLLYAR--KIFDVMGVRNEVSWSAMIGGYVASDCMKEAL-- 258

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY--GMEPEKLSNYVVLLNI 544
           + F +++ +           +L AC     L+ G  +   L   G   + L     L+++
Sbjct: 259 DIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICN-ALIDM 317

Query: 545 YNSSGKLKEAAEVIRTLRRKGL 566
           Y+  GK+  A EV   + R  +
Sbjct: 318 YSKCGKISFAREVFNRMDRHDI 339


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/577 (38%), Positives = 350/577 (60%), Gaps = 6/577 (1%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G    S+TY  LI  C+  R++ E   +  ++   G +P +++ N ++ M+V+  ++ DA
Sbjct: 8   GLWADSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDA 67

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
            +LFD+MP+RN++S   +I+       + +A  L + +  +       T+++++RA  G+
Sbjct: 68  HQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGM 127

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             +   + LH   +K G   +V+V  ALID+++K G  EDA  VFDEM     + WN+II
Sbjct: 128 SDV---RMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSII 184

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
            G+A +  S+ AL+L+  M+ +G   +  T + ++R CT LA LE   QAH  +V+  + 
Sbjct: 185 GGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YD 242

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D++ N+ALVD Y K G +EDAR VF++M  ++VI+W+ +I+G   +G  +EA++LFE M
Sbjct: 243 QDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELM 302

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
             +G +PN++T + VL ACS +GL E GW  F+SM + + I P   HY CMI+LLG+ G 
Sbjct: 303 KSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGK 362

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           LD+A  L+     +     W  LL ACRV  N+ L ++AA+K+  ++PE    Y VL NI
Sbjct: 363 LDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNI 422

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           Y +S K     E+ + +R  G++  P CSWIEV KQ H F+ GD+SH Q  E+ +K++++
Sbjct: 423 YANSQKWDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLNQL 482

Query: 605 MLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
           +  +   GYVPE   +L D++ EQ +  L +HSEKLA+AFGL+       ++I ++ RIC
Sbjct: 483 IHRLIGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLRIC 542

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
            DCH   KL + +  R IV+RD  R+HHF+DG CSCG
Sbjct: 543 GDCHVFCKLASKLENRNIVIRDPIRYHHFQDGKCSCG 579



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 158/302 (52%), Gaps = 8/302 (2%)

Query: 108 KRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
           K +++ALEL  +L    G      TY +++ AC G+  +R    +   ++  G E D+Y+
Sbjct: 93  KIHQKALELL-VLMLRDGVRPNVYTYSSVLRACNGMSDVR---MLHCGIIKEGLESDVYV 148

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
           R+ ++ +  + G   DA  +FDEM   + +  N II G   +     A  LF  +     
Sbjct: 149 RSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGF 208

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
                T  +++RA  GL L+ +G Q H   +K  +  ++ ++ AL+DMY KCGS+EDA+ 
Sbjct: 209 IAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDARR 266

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           VF++M E+  + W+T+I+G A +GYS+EAL L+  M+ SG K ++ T   ++  C+    
Sbjct: 267 VFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGL 326

Query: 348 LEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALI 405
           LE        + + +G          ++D   K G+++DA  + ++M C+ + ++W  L+
Sbjct: 327 LEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLL 386

Query: 406 AG 407
             
Sbjct: 387 GA 388


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/593 (37%), Positives = 355/593 (59%), Gaps = 1/593 (0%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           + ALEL   ++ EG     S T  +++ A   + S+R  + +  Y +  GFE  + +   
Sbjct: 258 KTALELVLRMQEEGK-RPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTA 316

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ M+ +CG +  AR +FD M  + +VS N +I G + +GD   A  +F  + +E  +  
Sbjct: 317 LVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMT 376

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           + T    + A A L  +  G+ +H    ++  G +V V  +LI MYSKC  ++ A  +F+
Sbjct: 377 NVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFE 436

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            +  KT V WN +I GYA +G   EA+D + +M+   +K D FT   +I     L+ L  
Sbjct: 437 NLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQ 496

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
           AK  H  ++R     ++   +ALVD Y+K G +  AR +FD M  ++V +WNA+I GYG 
Sbjct: 497 AKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGT 556

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           HG G+ A+ELFE+M    ++PN VTFL VLSACS SGL E G++ F SM +D+ ++P   
Sbjct: 557 HGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMD 616

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HY  M++LLGR   L+EA+  I+  P +   +++ A+L ACR++ N+ELG+ AA +++ +
Sbjct: 617 HYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDL 676

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           +P+    +V+L NIY ++    + A V  T+ +KG++  P  S +E++ + H F SG  S
Sbjct: 677 DPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTS 736

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSD 650
           H Q K+IY  ++ +   I   GY+P+  ++    D  ++++L+ HSEKLA+AF L+NTS 
Sbjct: 737 HPQAKKIYAFLETLGNRIKAAGYMPDTNSVHDVEDVVKEQLLNSHSEKLAIAFSLLNTSP 796

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            T + + ++ R+C DCHNA K I++VT REI+VRD  RFHHFKDG CSCGDYW
Sbjct: 797 GTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 170/360 (47%), Gaps = 37/360 (10%)

Query: 244 LELISVGKQLHS---CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW 300
           LEL +  K+LH      +K G          L+ ++ K GS+ +A  VF  + +K    +
Sbjct: 84  LELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELY 143

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           +T++ GYA +   ++A+  +  MR  GV+   + F+ ++++C   A L   K+ H  L+ 
Sbjct: 144 HTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIV 203

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
           +GF  ++ A + +V+ Y+K   +E+A  +FD+M  ++++ WN +I+GY  +G G+ A+EL
Sbjct: 204 NGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALEL 263

Query: 421 FEQMLLNGMRPNHVTFLAVLSAC----------SRSGLSER-GWEIFQSMSR-------- 461
             +M   G RP+ +T +++L A           S  G S R G+E F ++S         
Sbjct: 264 VLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSK 323

Query: 462 -----------DHKIKPRAMHYACMIELL---GREGLLDEAFALIRGAPFKTTKNMWAAL 507
                      D       + +  MI+     G  G   E F  +     + T       
Sbjct: 324 CGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGA 383

Query: 508 LTACRVNGNLELGKFAAEKLYGME-PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           L AC   G++E G+F  + L  +E    +S    L+++Y+   ++  AAE+   L+ K L
Sbjct: 384 LHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTL 443



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/210 (20%), Positives = 95/210 (45%), Gaps = 9/210 (4%)

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
           ++++ +CT +  L    Q    ++++G   + +  + LV  + K+G + +A  VF  +  
Sbjct: 81  AILLELCTSMKELH---QFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIED 137

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           K    ++ ++ GY  +   ++AV  F +M  +G+RP    F  +L  C  +    +G EI
Sbjct: 138 KIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEI 197

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
              +  +            ++ +  +  L++EA+ +    P +     W  +++    NG
Sbjct: 198 HCQLIVN-GFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLV-CWNTIISGYAQNG 255

Query: 516 NLELGKFAAEKLYGMEPE-KLSNYVVLLNI 544
               GK A E +  M+ E K  + + +++I
Sbjct: 256 ---FGKTALELVLRMQEEGKRPDSITIVSI 282


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 207/572 (36%), Positives = 346/572 (60%), Gaps = 2/572 (0%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y ++I+AC   +++   + + S++  +    D ++ N ++ M+ +CG + DAR +FD +P
Sbjct: 65  YHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIP 124

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
            R++VS   +I G   +    EA  L  D+          TF + ++A+       +G+Q
Sbjct: 125 TRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGEQ 184

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H+ A+K    ++V+V  AL+DMY++C  ++ A  VFD +  K  V WN +IAG+A  G 
Sbjct: 185 MHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGD 244

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            E  L  + EM+ +G    HFT+S +     R+ +LE  +  HA +++ G  L     + 
Sbjct: 245 GETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANT 304

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           ++  Y+K G + DAR VFD++  +++++WN ++  +  +G G+EAV  FE++   G++ N
Sbjct: 305 ILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLN 364

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            +TFL+VL+ACS  GL + G + F  M +D+ ++P   HY   ++LLGR GLL EA   +
Sbjct: 365 QITFLSVLTACSHGGLVKEGKQYFD-MMKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFV 423

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
              P + T  +W ALL ACR++ N ++G++AA+ ++ ++PE     V+L NIY S+G+  
Sbjct: 424 FKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWD 483

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
           +AA V + ++  G++  PACSW+E++   H+F++ D +H +++EIYR  + +   I K G
Sbjct: 484 DAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHPKSEEIYRMWEEVNTRIKKAG 543

Query: 613 YVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           YVP    +L  + EQE+   L YHSEK+A+AF LIN      ++I+++ RIC DCH+A +
Sbjct: 544 YVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAGATIRIMKNIRICGDCHSAFR 603

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++ V  REIVVRD +RFHHF +G CSCGDYW
Sbjct: 604 YVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 88/187 (47%), Gaps = 1/187 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           GF     TY ++ SA   + ++ + + V ++M+ +G +   ++ N +L M+ + G M+DA
Sbjct: 259 GFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDA 318

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R++FD + +R+LV+ N ++      G   EA   F ++ +        TF +++ A +  
Sbjct: 319 RKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHG 378

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ-GVFDEMSEKTTVGWNTI 303
            L+  GKQ             +    + +D+  + G +++A   VF    E T   W  +
Sbjct: 379 GLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGAL 438

Query: 304 IAGYALH 310
           +    +H
Sbjct: 439 LGACRMH 445


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/569 (38%), Positives = 352/569 (61%), Gaps = 1/569 (0%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           ++  C   + + + K   + +L  G + DL   N ++ M+ +CG +  AR++FDEMP R+
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
           LVS N +I  +  +G+  EA  L L +  E +     T ++++ A A    +S  + LH+
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
            A+K     NVFV+ AL+D+Y+KCG ++DA  VF+ M +++ V W+++ AGY  +   E+
Sbjct: 190 FAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQ 249

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           AL L+ +  ++G+K D F  S +I  C  LA++   KQ +A L + GF  +I   S+L+D
Sbjct: 250 ALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLID 309

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            Y+K G IE++  VF  +  +NV+ WNA+I+G   H R  E + LFE+M   G+ PN VT
Sbjct: 310 MYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVT 369

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
           F++VLSAC   GL  +G + F  M+++H + P   HY+CM++ L R G + EA+ LI   
Sbjct: 370 FVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKL 429

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           PF  + +MW +LL +CR +GNLEL + AA+KL+ +EP    NY++L N+Y ++GK  E A
Sbjct: 430 PFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSNMYAANGKWDEVA 489

Query: 556 EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
           ++ + L+   ++     SWIE+K + H+F+ G+++H +  EIY K++ +M E+ K GY  
Sbjct: 490 KMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNEVMDELQKLGYKV 549

Query: 616 EEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
           E +  L  V E  +Q +L +HSEKLA   GL+      P++I+++ RIC DCH+ +KL +
Sbjct: 550 ETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRICGDCHSFMKLAS 609

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
               R+++VRD +RFHHFK+G CSCGD+W
Sbjct: 610 KFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 168/321 (52%), Gaps = 3/321 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I  L  N    EAL+L   ++ EG       T  +++ AC    ++ E + + ++ + 
Sbjct: 135 TMIGSLTQNGEENEALDLLLQMQREGT-PFSEFTISSVLCACAAKCALSECQLLHAFAIK 193

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
              + ++++   +L ++ +CG+M DA  +F+ MP+R++V+ + + AG + +  Y +A  L
Sbjct: 194 AAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALAL 253

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F   WE          +++I A AGL  +  GKQ+++   K GF  N+FV+ +LIDMY+K
Sbjct: 254 FRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAK 313

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG IE++  VF ++ ++  V WN +I+G + H  S E + L+ +M+  G+  +  TF  +
Sbjct: 314 CGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSV 373

Query: 339 IRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           +  C  +  +   ++    + + H    ++   S +VD  S+ G+I +A  +  K+    
Sbjct: 374 LSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNA 433

Query: 398 VIS-WNALIAGYGNHGRGEEA 417
             S W +L+A    HG  E A
Sbjct: 434 SASMWGSLLASCRTHGNLELA 454


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/618 (36%), Positives = 364/618 (58%), Gaps = 16/618 (2%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +  L  N++  EALE    +  EG  +    T  +++ AC  L  +R  K + +Y L  G
Sbjct: 187 LSSLCQNEQLLEALEYLREMVLEG-VEPDEFTISSVLPACSHLEMLRTGKELHAYALKNG 245

Query: 161 -FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
             + + ++ + ++ M+  C  ++  RR+FD M +R +   N +IAG   +    EA LLF
Sbjct: 246 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 305

Query: 220 LDLWEEFSD-CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           + + E       S T A ++ A       S  + +H   +K G   + FV   L+DMYS+
Sbjct: 306 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSR 365

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-----------SG 327
            G I+ A  +F +M ++  V WNT+I GY    + E+AL L ++M++             
Sbjct: 366 LGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVS 425

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           +K +  T   I+  C  L++L   K+ HA  +++    D+   SALVD Y+K G ++ +R
Sbjct: 426 LKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSR 485

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
            VFD++  KNVI+WN +I  YG HG G+EA++L   M++ G++PN VTF++V +ACS SG
Sbjct: 486 KVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSG 545

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK-NMWAA 506
           + + G  IF  M  D+ ++P + HYAC+++LLGR G + EA+ L+   P    K   W++
Sbjct: 546 MVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 605

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           LL A R++ NLE+G+ AA+ L  +EP   S+YV+L NIY+S+G   +A EV R ++ +G+
Sbjct: 606 LLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGV 665

Query: 567 RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE 626
           R  P CSWIE   + H F++GD SH Q++++   ++ +   + K GYVP+   +L +V+E
Sbjct: 666 RKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEE 725

Query: 627 QEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
            E+ + L  HSEKLA+AFG++NTS  T +++ ++ R+C DCH A K I+ +  REI++RD
Sbjct: 726 DEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRD 785

Query: 686 ASRFHHFKDGMCSCGDYW 703
             RFH FK+G CSCGDYW
Sbjct: 786 VRRFHRFKNGTCSCGDYW 803



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 177/360 (49%), Gaps = 18/360 (5%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD-LYMRNRVLLMHVRCGMMID 183
           G    +  + AL+ A   L+ +   K++ +++   G+  D + + N ++ ++ +CG    
Sbjct: 5   GIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGA 64

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDY---LEAFLLFLDLWEEFSDCGSRTFATMIRA 240
             ++FD + ERN VS N +I+ +     +   LEAF   LD   E  +  S T  +++ A
Sbjct: 65  VYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLD---ENVEPSSFTLVSVVTA 121

Query: 241 SAGL---ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
            + L   E + +GKQ+H+  L+ G   N F+   L+ MY K G +  ++ +      +  
Sbjct: 122 CSNLPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDL 180

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           V WNT+++    +    EAL+   EM   GV+ D FT S ++  C+ L  L   K+ HA 
Sbjct: 181 VTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAY 240

Query: 358 LVRHG-FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
            +++G    +    SALVD Y    ++   R VFD M  + +  WNA+IAGY  +   +E
Sbjct: 241 ALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKE 300

Query: 417 AVELFEQMLLN-GMRPNHVTFLAVLSACSRSGLSER-----GWEIFQSMSRDHKIKPRAM 470
           A+ LF  M  + G+  N  T   V+ AC RSG   R     G+ + + + RD  ++   M
Sbjct: 301 ALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLM 360


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 250/608 (41%), Positives = 361/608 (59%), Gaps = 23/608 (3%)

Query: 111 REALELF-EILEFEGGFDVGSSTYDALISAC---IGLRSIREVKRVFSYMLSTGFEPDLY 166
           R AL LF E+ E   G D    T   +I AC   +GL     V+++  +++  G++    
Sbjct: 123 RPALRLFAEVRELRFGLD--GFTLSGVIIACGDDVGL-----VRQLHCFVVVCGYDCYAS 175

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           + N VL  + R G + +ARR+F EM E   R+ VS N +I       + LEA  LF ++ 
Sbjct: 176 VNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMV 235

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC-GSI 282
                    T A+++ A   ++ +  G Q H   +K GF  N  V   LID+YSKC G +
Sbjct: 236 RRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGM 295

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALH-GYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
            + + VF+E++    V WNT+I+G++ +   SE+ +  + EM+ +G   D  +F  +   
Sbjct: 296 VECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSA 355

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVA-NSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
           C+ L+S    KQ HA  ++     + V+ N+ALV  YSK G + DAR VFD M   N++S
Sbjct: 356 CSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVS 415

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
            N++IAGY  HG   E++ LFE ML   + PN +TF+AVLSAC  +G  E G + F  M 
Sbjct: 416 LNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMK 475

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
              +I+P A HY+CMI+LLGR G L EA  +I   PF      WA LL ACR +GN+EL 
Sbjct: 476 ERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELA 535

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
             AA +   +EP   + YV+L N+Y S+ + +EAA V R +R +G++  P CSWIE+ K+
Sbjct: 536 VKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKK 595

Query: 581 PHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLL-----PDVDEQEQRVLSYH 635
            HVF++ D SH   KEI+  +  ++ ++ + GYVP+ +  L      + DE+E+R+L YH
Sbjct: 596 VHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLL-YH 654

Query: 636 SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
           SEKLAVAFGLI+T +W P+ +V++ RIC DCHNAIKLI+ +TGREI VRD  RFH FK+G
Sbjct: 655 SEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKEG 714

Query: 696 MCSCGDYW 703
            CSCGDYW
Sbjct: 715 HCSCGDYW 722



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 117/245 (47%), Gaps = 36/245 (14%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG---- 287
           +TF  +++A      +  GK LH+   K     + ++S     +YSKCGS+ +AQ     
Sbjct: 10  QTFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDL 69

Query: 288 ---------------------------VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY 320
                                      VFDE+ +   V +NT+IA YA  G    AL L+
Sbjct: 70  TQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLF 129

Query: 321 YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380
            E+R+    +D FT S +I  C     L   +Q H  +V  G+      N+A++  YS+ 
Sbjct: 130 AEVRELRFGLDGFTLSGVIIACGDDVGL--VRQLHCFVVVCGYDCYASVNNAVLACYSRK 187

Query: 381 GRIEDARHVFDKM---LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           G + +AR VF +M     ++ +SWNA+I   G H  G EAVELF +M+  G++ +  T  
Sbjct: 188 GFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMA 247

Query: 438 AVLSA 442
           +VL+A
Sbjct: 248 SVLTA 252


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/600 (37%), Positives = 360/600 (60%), Gaps = 19/600 (3%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N R  +A  LF+        D    +++ L+   +  + + + + +F  M       D
Sbjct: 195 VQNGRIEDARRLFD-----SKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR----D 245

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
               N ++  + + G++ +ARRLF+E+P R++ +   +++G + +G   EA  +F    E
Sbjct: 246 KISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIF----E 301

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
           E  +    ++  MI      + I   ++L           N      ++  Y++CG+I+ 
Sbjct: 302 EMPEKNEVSWNAMIAGYVQSQQIEKAREL----FDQMPSRNTSSWNTMVTGYAQCGNIDQ 357

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+ +FDEM ++  + W  +I+GYA  G SEEAL L+ +M+  G  ++    +  +  C  
Sbjct: 358 AKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAE 417

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           +A+LE  KQ H  LV+ GF    +A +AL+  Y K G IE+A  VF+ +  K+++SWN +
Sbjct: 418 IAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTM 477

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           IAGY  HG G+EA+ LFE M +  ++P+ VT + VLSACS +GL ++G E F SM +++ 
Sbjct: 478 IAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYG 536

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           I   A HY CMI+LLGR G LDEA  L++  PF      W ALL A R++G+ ELG+ AA
Sbjct: 537 ITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAA 596

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
           EK++ MEP+    YV+L N+Y +SG+ +E  E+   +R KG++ +P  SW+E++ + H+F
Sbjct: 597 EKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIF 656

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAF 643
             GD SH + + IY  ++ + LE+ K G+V   K +L DV+E+E + +L YHSEKLAVAF
Sbjct: 657 TVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAF 716

Query: 644 GLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           G+++     P++++++ R+C DCHNAIK I+ +T R+I+VRD++RFHHF +G CSCGDYW
Sbjct: 717 GILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 191/409 (46%), Gaps = 62/409 (15%)

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
           ST  + D+   NR +  ++R G    A  +F+ M  R+ V+ N +I+G + +  +     
Sbjct: 53  STIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKF----- 107

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
                     DC  + F  M       +LIS                NV +S      Y 
Sbjct: 108 ----------DCARKVFEKM----PDRDLISW---------------NVMLSG-----YV 133

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           K G++  A+ +F++M EK  V WN +++G+A +G+ EEA  ++ +M    +  +  +++ 
Sbjct: 134 KNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNG 189

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           ++    +   +E A++    L       +IV+ + L+  Y +  R++DAR +FD+M  ++
Sbjct: 190 LLSAYVQNGRIEDARR----LFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRD 245

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
            ISWN +I GY  +G   EA  LFE++ +  +      + A++S   ++G+ +    IF+
Sbjct: 246 KISWNIMITGYAQNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFE 301

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
            M   +++      +  MI    +   +++A  L    P + T + W  ++T     GN+
Sbjct: 302 EMPEKNEVS-----WNAMIAGYVQSQQIEKARELFDQMPSRNTSS-WNTMVTGYAQCGNI 355

Query: 518 ELGKFAAEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
           +  K     L+   P++   ++  +++ Y  SG+ +EA  +   ++R G
Sbjct: 356 DQAKI----LFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDG 400


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/630 (37%), Positives = 340/630 (53%), Gaps = 35/630 (5%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           RY + +  F  +  EG     +    A++  C G+  +   KRV  +ML  G   D+ + 
Sbjct: 91  RYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLC 150

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF--------- 219
           N VL M+ +CG    ARR+F  M ER+ VS N+ I   I SGD L +  LF         
Sbjct: 151 NAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTT 210

Query: 220 ------------------LDLWEEFSDCG----SRTFATMIRASAGLELISVGKQLHSCA 257
                             L      +  G      T++T    +  L L  +G+QLH   
Sbjct: 211 SWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRV 270

Query: 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT---TVGWNTIIAGYALHGYSE 314
           L      + FV  +L+DMY KCG +E A  VFD  S  T      W+T++AGY  +G  E
Sbjct: 271 LIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREE 330

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EALDL+  M   GV  D FT + +   C  +  +E  +Q H  + +  + LD    SA+V
Sbjct: 331 EALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASAIV 390

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D Y+K G +EDAR +FD+   KN+  W +++  Y +HG+G  A+ELFE+M    M PN +
Sbjct: 391 DMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPNEI 450

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           T + VLSACS  GL   G   F+ M  ++ I P   HY C+++L GR GLLD+A   I  
Sbjct: 451 TLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFIEE 510

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
                   +W  LL+ACR++ + E  K A+EKL  +E     +YV+L NIY ++ K  + 
Sbjct: 511 NNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWHDT 570

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
            E+  +++ + +R  P  SWI +K   H F++GD SH Q+ EIY  +++++  + + GY 
Sbjct: 571 FELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEIGYT 630

Query: 615 PEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLI 673
                ++ DV DEQ +  L +HSEKLA+AFG+I+T   TPL+I ++ R+C DCH AIK I
Sbjct: 631 SRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCEDCHEAIKYI 690

Query: 674 AMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++ TGREIVVRD  RFHHFKD  CSC D+W
Sbjct: 691 SLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 199/418 (47%), Gaps = 45/418 (10%)

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF- 226
           R  VL   VR     DAR +FDE P R      + I+G    G Y +    F ++  E  
Sbjct: 48  RASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGE 107

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
           +   +   A ++R  AG+  +  GK++H   L+ G   +V +  A++DMY+KCG  E A+
Sbjct: 108 ATPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERAR 167

Query: 287 GVFDEMSE-------------------------------KTTVGWNTIIAGYALHGYSEE 315
            VF  M+E                               + T  WNTII+G    G++ +
Sbjct: 168 RVFGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAAD 227

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           AL     M  +GV  +H+T+S    +   L   +  +Q H  ++      D    S+L+D
Sbjct: 228 ALSHLRRMAQAGVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMD 287

Query: 376 FYSKWGRIEDARHVFDKM--LCKNV-ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
            Y K G +E A  VFD    L +++  +W+ ++AGY  +GR EEA++LF +ML  G+  +
Sbjct: 288 MYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAAD 347

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
             T  +V +AC+  G+ E+G ++   + +    K  A   + ++++  + G L++A ++ 
Sbjct: 348 RFTLTSVAAACANVGMVEQGRQVHGCVEK-LWYKLDAPLASAIVDMYAKCGNLEDARSIF 406

Query: 493 RGAPFKTTKNM--WAALLTACRVNGNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNS 547
             A    TKN+  W ++L +   +G    G+ A E    M  EK++ N + L+ + ++
Sbjct: 407 DRA---CTKNIAVWTSMLCSYASHGQ---GRIAIELFERMTAEKMTPNEITLVGVLSA 458



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 151/335 (45%), Gaps = 31/335 (9%)

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG-VKMDHFTFSMIIRIC 342
           DA+GVFDE   +T   W   I+G A  G   + +  + EM   G    + F  + ++R C
Sbjct: 63  DARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCC 122

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
             +  +E  K+ H  ++R+G  LD+V  +A++D Y+K G+ E AR VF  M  ++ +SWN
Sbjct: 123 AGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWN 182

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR- 461
             I      G    +++LF++  L     +  ++  ++S   RSG +       + M++ 
Sbjct: 183 IAIGACIQSGDILGSMQLFDESPLR----DTTSWNTIISGLMRSGHAADALSHLRRMAQA 238

Query: 462 ----DHKIKPRAMHYACMIEL--LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
               +H     A   A M+ L  LGR+       A + G  F  +  M   +   C   G
Sbjct: 239 GVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLM--DMYCKC---G 293

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL--------R 567
            LE      +    +  +    +  ++  Y  +G+ +EA ++ R + R+G+         
Sbjct: 294 LLEAAASVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTS 353

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVD 602
           +  AC+ + + +Q      G Q H   ++++ K+D
Sbjct: 354 VAAACANVGMVEQ------GRQVHGCVEKLWYKLD 382



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/223 (21%), Positives = 100/223 (44%), Gaps = 9/223 (4%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + +   V N R  EAL+LF  +  EG       T  ++ +AC  +  + + ++V   +  
Sbjct: 318 TMVAGYVQNGREEEALDLFRRMLREG-VAADRFTLTSVAAACANVGMVEQGRQVHGCVEK 376

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
             ++ D  + + ++ M+ +CG + DAR +FD    +N+     ++      G    A  L
Sbjct: 377 LWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIEL 436

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVG----KQLHSCALKMGFGDNVFVSCALID 274
           F  +  E       T   ++ A + + L+S G    KQ+     + G   ++     ++D
Sbjct: 437 FERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQE---EYGIVPSIEHYNCIVD 493

Query: 275 MYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEA 316
           +Y + G ++ A+   +E +     + W T+++   LH ++E A
Sbjct: 494 LYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYA 536



 Score = 46.2 bits (108), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 87/198 (43%), Gaps = 8/198 (4%)

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-M 429
           ++++ F+ +  R  DAR VFD+   +    W   I+G    GR  + +  F +ML  G  
Sbjct: 49  ASVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEA 108

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
            PN     AV+  C+  G  E G  +   M R+  +    +    ++++  + G  + A 
Sbjct: 109 TPNAFVLAAVVRCCAGMGDVESGKRVHGWMLRN-GVHLDVVLCNAVLDMYAKCGQFERAR 167

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP-EKLSNYVVLLNIYNSS 548
            +  GA  +     W   + AC  +G++ LG     +L+   P    +++  +++    S
Sbjct: 168 RVF-GAMAERDAVSWNIAIGACIQSGDI-LGSM---QLFDESPLRDTTSWNTIISGLMRS 222

Query: 549 GKLKEAAEVIRTLRRKGL 566
           G   +A   +R + + G+
Sbjct: 223 GHAADALSHLRRMAQAGV 240


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/555 (39%), Positives = 339/555 (61%), Gaps = 1/555 (0%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           +++  +M+    + D Y+   ++ M+ + G++ DAR++F+ +P ++L+  N +I+G    
Sbjct: 325 RQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHG 384

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
           G + E+  LF  + +E SD    T A +++++A LE IS   Q+H+ A K+GF  +  V 
Sbjct: 385 GCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVV 444

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
             LID Y KC  +  A  VF+E S    + + ++I   +   + E+A+ L+ EM   G++
Sbjct: 445 NGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLE 504

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            D F  S ++  C  L++ E  KQ HA L++  F  D+ A +ALV  Y+K G IEDA   
Sbjct: 505 PDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLA 564

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449
           F  +  K V+SW+A+I G   HG G+ A+++F +M+   + PNH+T  +VL AC+ +GL 
Sbjct: 565 FSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLV 624

Query: 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509
           +     F SM     I     HY+CMI+LLGR G LD+A  L+   PF+    +W ALL 
Sbjct: 625 DEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLA 684

Query: 510 ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRML 569
           A RV+ + ELGK AAEKL+ +EPEK   +V+L N Y S+G   E A+V + ++   ++  
Sbjct: 685 ASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKE 744

Query: 570 PACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ 629
           PA SW+E+K + H F+ GD+SH + ++IY K++ +   +SK GYVP  +  L DVD+ E+
Sbjct: 745 PAMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSEK 804

Query: 630 R-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
             +LS+HSE+LAVAF LI+T    P+++ ++ RIC DCH A K I+ +  REI++RD +R
Sbjct: 805 ELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINR 864

Query: 689 FHHFKDGMCSCGDYW 703
           FHHF DG CSCGDYW
Sbjct: 865 FHHFSDGACSCGDYW 879



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 183/358 (51%), Gaps = 22/358 (6%)

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
           RN +L  + +C +   ARR+FDE P+   VS + ++    ++    EA   F  +     
Sbjct: 40  RNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGV 99

Query: 228 DCGSRTFATMIRAS--AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
            C       +++ +  AGL     G Q+H+ A+  G   ++FV+ AL+ MY   G +++A
Sbjct: 100 RCNEFALPIVLKCAPDAGL-----GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEA 154

Query: 286 QGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           + VFDE + ++  V WN +++ +  +    +A++L+ EM  SGV+ + F FS ++  CT 
Sbjct: 155 RRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTG 214

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
              LE  ++ HA +VR G+  D+   +ALVD YSK G I  A  VF K+   +V+SWNA 
Sbjct: 215 SRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAF 274

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE-------RGWEIFQ 457
           I+G   HG  + A+EL  QM  +G+ PN  T  ++L AC+ +G           G+ I  
Sbjct: 275 ISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKA 334

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
               D  I         ++++  + GLLD+A  +    P K    +W AL++ C   G
Sbjct: 335 CADSDDYIG------VALVDMYAKYGLLDDARKVFEWIPRKDLL-LWNALISGCSHGG 385



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 162/297 (54%), Gaps = 3/297 (1%)

Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP-ERNLVSCNMIIAGMIDS 209
           +V +  +STG   D+++ N ++ M+   G + +ARR+FDE   +RN VS N +++  + +
Sbjct: 121 QVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKN 180

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
               +A  LF ++           F+ ++ A  G   +  G+++H+  ++ G+  +VF +
Sbjct: 181 DRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTA 240

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            AL+DMYSK G I  A  VF ++ +   V WN  I+G  LHG+ + AL+L  +M+ SG+ 
Sbjct: 241 NALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLV 300

Query: 330 MDHFTFSMIIR--ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
            + FT S I++        +    +Q H  +++     D     ALVD Y+K+G ++DAR
Sbjct: 301 PNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDAR 360

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            VF+ +  K+++ WNALI+G  + G   E++ LF +M   G   N  T  AVL + +
Sbjct: 361 KVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTA 417



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 232/468 (49%), Gaps = 12/468 (2%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +   V N R  +A+ELF  + + G        +  +++AC G R +   ++V + ++ TG
Sbjct: 174 MSAFVKNDRCSDAVELFGEMVWSG-VRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTG 232

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           ++ D++  N ++ M+ + G +  A  +F ++P+ ++VS N  I+G +  G    A  L L
Sbjct: 233 YDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLL 292

Query: 221 DLWEEFSDCGSRTFATMIR--ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
            +          T +++++  A AG    ++G+Q+H   +K     + ++  AL+DMY+K
Sbjct: 293 QMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAK 352

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            G ++DA+ VF+ +  K  + WN +I+G +  G   E+L L+  MR  G  ++  T + +
Sbjct: 353 YGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAV 412

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           ++    L ++    Q HA   + GF  D    + L+D Y K   +  A  VF++    N+
Sbjct: 413 LKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNI 472

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           I++ ++I        GE+A++LF +ML  G+ P+     ++L+AC+     E+G ++   
Sbjct: 473 IAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAH 532

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           + +  K          ++    + G +++A     G P K   + W+A++     +G+  
Sbjct: 533 LIK-RKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVS-WSAMIGGLAQHGH-- 588

Query: 519 LGKFAAEKLYGMEPEKLS-NYVVLLNIY---NSSGKLKEAAEVIRTLR 562
            GK A +    M  E+++ N++ L ++    N +G + EA     +++
Sbjct: 589 -GKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMK 635


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/631 (36%), Positives = 367/631 (58%), Gaps = 29/631 (4%)

Query: 101  IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
            I  L  N R+ EAL ++  L    G      T  +++ AC  L  +R  + +  Y L  G
Sbjct: 506  ISSLSQNDRFEEAL-MYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNG 564

Query: 161  -FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
                + ++   ++ M+  C      R +FD +  R +   N ++AG   +    +A  LF
Sbjct: 565  DLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLF 624

Query: 220  LDLWEEFSDC-GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
            +++  E   C  + TFA+++ A    ++ S  + +H   +K GFG + +V  AL+DMYS+
Sbjct: 625  VEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSR 684

Query: 279  CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR-------------- 324
             G +E ++ +F  M+++  V WNT+I G  + G  ++AL+L +EM+              
Sbjct: 685  MGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDY 744

Query: 325  --DSGV--KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380
              D GV  K +  T   ++  C  LA+L   K+ HA  V+    +D+   SALVD Y+K 
Sbjct: 745  EDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKC 804

Query: 381  GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG------MRPNHV 434
            G +  A  VFD+M  +NVI+WN LI  YG HG+GEEA+ELF  M   G      +RPN V
Sbjct: 805  GCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEV 864

Query: 435  TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
            T++A+ +ACS SG+ + G  +F +M   H ++PR  HYAC+++LLGR G + EA+ LI  
Sbjct: 865  TYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINT 924

Query: 495  APFKTTK-NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
             P    K + W++LL ACR++ ++E G+ AA+ L+ +EP   S+YV++ NIY+S+G   +
Sbjct: 925  MPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQ 984

Query: 554  AAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGY 613
            A  V + ++  G+R  P CSWIE   + H FLSGD SH Q+KE++  ++ +   + K GY
Sbjct: 985  ALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGY 1044

Query: 614  VPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKL 672
            VP+   +L +VD++E+  +L  HSE+LA+AFGL+NT   T +++ ++ R+C DCH A K+
Sbjct: 1045 VPDISCVLHNVDDEEKETMLCGHSERLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKI 1104

Query: 673  IAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            I+ +  REI++RD  RFHHF +G CSCGDYW
Sbjct: 1105 ISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 199/400 (49%), Gaps = 24/400 (6%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEP--DLYMRNRVLLMHVRCGMMIDARRLFD 189
            + A++ A   +  +   K++ +++   G  P   + + N ++ M+ +CG +  AR++FD
Sbjct: 332 AFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFD 391

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL-IS 248
           ++P+R+ VS N +IA +    ++  +  LF  +  E  D  S T  ++  A + +   + 
Sbjct: 392 DIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVR 451

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           +GKQ+H+  L+ G     + + AL+ MY++ G + DA+ +F     K  V WNT+I+  +
Sbjct: 452 LGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLS 510

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
            +   EEAL   Y M   GV+ D  T + ++  C++L  L   ++ H   +R+G   D++
Sbjct: 511 QNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRNG---DLI 567

Query: 369 ANS----ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            NS    ALVD Y    + +  R VFD ++ + V  WNAL+AGY  +   ++A+ LF +M
Sbjct: 568 ENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEM 627

Query: 425 LLNG-MRPNHVTFLAVLSACSRSGLSE-----RGWEIFQSMSRDHKIKPRAMHYACMIEL 478
           +      PN  TF +VL AC R  +        G+ + +   +D  ++        ++++
Sbjct: 628 ISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQ------NALMDM 681

Query: 479 LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
             R G + E    I G   K     W  ++T C V G  +
Sbjct: 682 YSRMGRV-EISKTIFGRMNKRDIVSWNTMITGCIVCGRYD 720


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/593 (37%), Positives = 341/593 (57%), Gaps = 2/593 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL  F +++ EG       T+ +L++       + E+ R+   +   G +    MRN +
Sbjct: 345 EALRYFRMMQQEGILP-NRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNAL 403

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + ++ RC    DAR +FD++   NL+S N +I   +    + +A  LF  + ++      
Sbjct: 404 VNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDR 463

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
             F T++ A          K +H C  + G G +  V  +L++MY+K G ++ A+ +  E
Sbjct: 464 VNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQE 523

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M E+    WN +I GYALHG S EAL+ Y +++   + +D  TF  ++  CT   SL   
Sbjct: 524 MDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEG 583

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K  H+  V  G   D++  +AL + YSK G +E+AR +FD M  ++ +SWN ++  Y  H
Sbjct: 584 KMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQH 643

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G  EE ++L  +M   G++ N +TF++VLS+CS +GL   G + F S+  D  I+ +  H
Sbjct: 644 GESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEH 703

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           Y C+++LLGR G L EA   I   P +     WA+LL ACRV  +L+ GK AA KL  ++
Sbjct: 704 YGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELD 763

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P   S  VVL NIY+  G  K AA++ R +  + ++ +P  S I+VK + H F   D SH
Sbjct: 764 PGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSH 823

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSD 650
            +  EIY KV+ +   + + GYVP+ K +L DVD EQ++ +L+YHSEKLA+AFGLI+T +
Sbjct: 824 PRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPE 883

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            + L I ++ R+C DCH A K I+ +TGREIVVRD  RFHHF+DG CSC DYW
Sbjct: 884 TSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 133/462 (28%), Positives = 227/462 (49%), Gaps = 40/462 (8%)

Query: 108 KRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
           K ++EAL LF  +  EG     + T  A++++C   R +R+   V +  L  GF  +  +
Sbjct: 37  KSFQEALALFHAMLLEG-VAPNAITLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLV 95

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG-DYLEAFLLFLDLWEEF 226
              +L M+ +CG ++DA+ +F+EM E+N+V+ N ++      G  +  A  LF  +  E 
Sbjct: 96  ATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEG 155

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 TF  ++ +    + +  GK +HSC  +     +VFV+ AL++ Y+KCGS+ DA+
Sbjct: 156 VKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDAR 215

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VFD M  ++   WN++I+ Y++   S EA  ++  M+  G + D  TF  I+  C    
Sbjct: 216 KVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPE 275

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           +L+H K     +    F LD+   +AL+  Y++    EDA  VF +M   N+I+W+A+I 
Sbjct: 276 TLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIIT 335

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA-CSRSGLSERGWEIFQSMSRDHKI 465
            + +HG   EA+  F  M   G+ PN VTF+++L+   + SGL E        +SR H  
Sbjct: 336 AFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEE--------LSRIH-- 385

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
                       LL  E  LD+            T  M  AL+    V G  E    A  
Sbjct: 386 ------------LLITEHGLDD------------TTTMRNALVN---VYGRCESPDDART 418

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
               +E   L ++  ++ IY    +  +A ++ RT++++G++
Sbjct: 419 VFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQ 460



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 122/459 (26%), Positives = 226/459 (49%), Gaps = 41/459 (8%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           ++ A+ELF  +  EG       T+  ++++ +   ++R+ K + S +  +    D+++  
Sbjct: 141 WKLAVELFTRMLLEG-VKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNT 199

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++  + +CG + DAR++FD MP R++ + N +I+    S    EAF +F  + +E   C
Sbjct: 200 ALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERC 259

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              TF +++ A    E +  GK +     +  F  ++FV  ALI MY++C S EDA  VF
Sbjct: 260 DRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVF 319

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
             M +   + W+ II  +A HG+  EAL  +  M+  G+  +  TF  ++   T  + LE
Sbjct: 320 GRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLE 379

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
              + H  +  HG        +ALV+ Y +    +DAR VFD++   N+ISWN++I  Y 
Sbjct: 380 ELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYV 439

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
              R ++A++LF  M   G++P+ V F+ +L AC+   +   G             + R 
Sbjct: 440 QCERHDDALQLFRTMQQQGIQPDRVNFMTILGACT---IGSHG-------------RTRK 483

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTK--NMWAALLTACRVNGNLELGKFAAEKL 527
           + + C+ E            + + G+P   T   NM+A         G L++ +   ++ 
Sbjct: 484 LVHQCVEE------------SGLGGSPLVQTSLVNMYAKA-------GELDVAEVILQE- 523

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
             M+ ++++ + VL+N Y   G+ +EA E  + L+ + +
Sbjct: 524 --MDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAI 560



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 120/396 (30%), Positives = 206/396 (52%), Gaps = 6/396 (1%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+ RCG + DA   F ++  RN+VS N++I+       + EA  LF  +  E     + T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
              ++ +      +  G  +H+ +L+ GF  N  V+ AL++MY KCG++ DAQ VF+EM+
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 294 EKTTVGWNTIIAGYALHGYS-EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
           EK  V WN ++  Y+L G   + A++L+  M   GVK +  TF  ++       +L   K
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
             H+ +      LD+  N+ALV+ Y+K G + DAR VFD M C++V +WN++I+ Y    
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
           R  EA  +F++M   G R + VTFL++L AC      + G  + +S+S +   +      
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESIS-ETSFELDLFVG 299

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL--ELGKFAAEKLYGM 530
             +I +  R    ++A A + G   +T    W+A++TA   +G+    L  F   +  G+
Sbjct: 300 TALITMYARCRSPEDA-AQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGI 358

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
            P +++ ++ LLN + +   L+E + +   +   GL
Sbjct: 359 LPNRVT-FISLLNGFTTPSGLEELSRIHLLITEHGL 393


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/581 (37%), Positives = 347/581 (59%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           E G    S T  +++ A   L+++R  + +  Y    GFE  + +   +L  + +CG + 
Sbjct: 236 EAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVR 295

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
            AR +F  M  RN+VS N +I G   +G+  EAF  FL + +E  +  + +    + A A
Sbjct: 296 SARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACA 355

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
            L  +  G+ +H    +   G +V V  +LI MYSKC  ++ A  VF  +  KT V WN 
Sbjct: 356 NLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNA 415

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I GYA +G   EAL+L+ EM+   +K D FT   +I     L+    AK  H   +R  
Sbjct: 416 MILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTL 475

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
              ++   +AL+D ++K G I+ AR +FD M  ++VI+WNA+I GYG +G G EA++LF 
Sbjct: 476 MDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFN 535

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           +M    ++PN +TFL+V++ACS SGL E G   F+SM  ++ ++P   HY  M++LLGR 
Sbjct: 536 EMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRA 595

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
           G LD+A+  I+  P K    +  A+L ACR++ N+ELG+  A++L+ ++P+    +V+L 
Sbjct: 596 GRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLA 655

Query: 543 NIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVD 602
           N+Y S+    + A V   + +KG++  P CS +E++ + H F SG  +H Q+K IY  ++
Sbjct: 656 NMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLE 715

Query: 603 RMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
            +  E+   GYVP+  ++    ++ ++++LS HSE+LA+AFGL+NT   T + I ++ R+
Sbjct: 716 TLGDEMKAAGYVPDTNSIHDVEEDVKEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRV 775

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH A K I++VTGREI+VRD  RFHHFK+G+CSCGDYW
Sbjct: 776 CGDCHEATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 193/394 (48%), Gaps = 4/394 (1%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           S++E+ ++   ++  GF  +   + +++ +  +   + +A R+F+ +  +  V  + ++ 
Sbjct: 56  SLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLK 115

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
           G   +    +A   +  +  +        F  +++ S     +  G+++H   +  GF  
Sbjct: 116 GYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQS 175

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           N+F   A++++Y+KC  IEDA  +F+ M ++  V WNT++AGYA +G++  A+ +  +M+
Sbjct: 176 NLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQ 235

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           ++G K D  T   ++     L +L   +  H    R GF   +   +A++D Y K G + 
Sbjct: 236 EAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVR 295

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            AR VF  M  +NV+SWN +I GY  +G  EEA   F +ML  G+ P +V+ +  L AC+
Sbjct: 296 SARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACA 355

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
             G  ERG  + + +  + KI         +I +  +   +D A ++      KT    W
Sbjct: 356 NLGDLERGRYVHRLLD-EKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVT-W 413

Query: 505 AALLTACRVNG--NLELGKFAAEKLYGMEPEKLS 536
            A++     NG  N  L  F   + + ++P+  +
Sbjct: 414 NAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFT 447


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/600 (37%), Positives = 357/600 (59%), Gaps = 18/600 (3%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N +  EA  LF   E     +    +++ L+   +  + I E ++ F  M       D
Sbjct: 194 VQNSKLEEACVLFGSRE-----NWALVSWNCLLGGFVKKKKIVEARQFFDSMKVR----D 244

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           +   N ++  + + G + +AR+LFDE P  ++ +   +++G I +    EA  LF    +
Sbjct: 245 VVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELF----D 300

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
              +    ++  M+      E + + K+L           NV     +I  Y++CG I +
Sbjct: 301 RMPERNEVSWNAMLAGYVQGERVEMAKELFDVMP----CRNVSTWNTMITGYAQCGKISE 356

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+ +FD+M ++  V W  +IAGY+  G+S EAL L+  M   G +++  +FS  +  C  
Sbjct: 357 AKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCAD 416

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           + +LE  KQ H  LV+ G+       +AL+  Y K G IE+A  +F +M  K+++SWN +
Sbjct: 417 VVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTM 476

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           IAGY  HG GEEA+  FE M   G++P+  T +AVLSACS +GL ++G + F +M++D+ 
Sbjct: 477 IAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYG 536

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           ++P + HYACM++LLGR GLL+EA  L++  PF+    +W  LL A RV+GN EL + AA
Sbjct: 537 VRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAA 596

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
           +K++ MEPE    YV+L N+Y SSG+  +  ++   +R KG++ +P  SWIE++ + H F
Sbjct: 597 DKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTF 656

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAF 643
             GD+ H +  EI+  ++ + L + K GYV +   +L DV+E+E +R++ YHSE+LAVA+
Sbjct: 657 SVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAY 716

Query: 644 GLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           G++  S   P++++++ R+C DCHNAIK +A VTGR I++RD +RFHHFKDG CSCGDYW
Sbjct: 717 GIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 117/502 (23%), Positives = 218/502 (43%), Gaps = 62/502 (12%)

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
           ++++  +  L    + D+   N  +  ++R G   +A R+F  MP  + VS N +I+G +
Sbjct: 42  QIQKSQTKPLPKSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYL 101

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
            +G++  A +LF    +E  +    ++  MI+       +   ++L     +M   D V 
Sbjct: 102 RNGEFELARMLF----DEMPERDLVSWNVMIKGYVRNRNLGKARELFE---RMPERD-VC 153

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY------- 320
               ++  Y++ G ++DA+ VFD M EK  V WN +++ Y  +   EEA  L+       
Sbjct: 154 SWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWA 213

Query: 321 ----------YEMRDSGVKMDHFTFSMIIRICTRLASL--EHAKQAHAGLVRHGFG---- 364
                     +  +   V+   F  SM +R      ++   +A+       R  F     
Sbjct: 214 LVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPV 273

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D+   +A+V  Y +   +E+AR +FD+M  +N +SWNA++AGY    R E A ELF+ M
Sbjct: 274 HDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVM 333

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
                  N  T+  +++  ++ G       +F  M +   +      +A MI    + G 
Sbjct: 334 PCR----NVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVS-----WAAMIAGYSQSGH 384

Query: 485 LDEA---FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY--GMEPEKLSNYV 539
             EA   F L+     +  ++ +++ L+ C     LELGK    +L   G E        
Sbjct: 385 SYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNA 444

Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYR 599
           +LL +Y   G ++EA ++ + +  K +      SW       +  ++G   H   +E  R
Sbjct: 445 LLL-MYCKCGSIEEANDLFKEMAGKDI-----VSW-------NTMIAGYSRHGFGEEALR 491

Query: 600 KVDRMMLEISKHGYVPEEKTLL 621
             + M     + G  P++ T++
Sbjct: 492 FFESM----KREGLKPDDATMV 509


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/603 (38%), Positives = 357/603 (59%), Gaps = 8/603 (1%)

Query: 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP 163
           L LN+   EAL+LF       G  +  STY  +I  C  L+ +   +++ S +L  GF  
Sbjct: 277 LQLNECELEALQLFHESRATMG-KMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHL 335

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFD-EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL 222
              +   +   + +CG + DA  +F      RN+VS   II+G I +GD   A +LF  +
Sbjct: 336 TGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRM 395

Query: 223 WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
            E+       T++ M++AS  +    +  Q+H+  +K  +     V  AL+  YSK GS 
Sbjct: 396 REDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTNYQHIPSVGTALLASYSKFGST 451

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           EDA  +F  + +K  V W+ +++ +A  G  E A  L+ +M   G+K + FT S +I  C
Sbjct: 452 EDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDAC 511

Query: 343 T-RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
               A ++  +Q HA  +++ +   I  +SALV  YS+ G I+ A+ VF++   ++++SW
Sbjct: 512 ACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSW 571

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           N++I+GY  HG   +A+E F QM  +G++ + VTFLAV+  C+ +GL   G + F SM R
Sbjct: 572 NSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVR 631

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           DHKI P   HYACM++L  R G LDE  +LIR  PF     +W  LL ACRV+ N+ELGK
Sbjct: 632 DHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGK 691

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
           F+A+KL  +EP   S YV+L NIY ++GK KE  EV + +  + ++    CSWI++K + 
Sbjct: 692 FSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKV 751

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLA 640
           H F++ D+SH  + +IY+K+  ++  + + GY P    +L D+ E Q++ +L  HSE+LA
Sbjct: 752 HSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLA 811

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AFGLI T   TPLQIV++ R+C DCH  +K+++M+  REI++RD SRFHHF  G CSCG
Sbjct: 812 LAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCG 871

Query: 701 DYW 703
           D+W
Sbjct: 872 DFW 874



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 104/333 (31%), Positives = 185/333 (55%), Gaps = 3/333 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFE-PDLYMRNR 170
           E L+ F +    GG  V S+T   ++ AC  +      +++    +  G +  ++     
Sbjct: 82  EVLDQFSVAR-RGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTS 140

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ M+++CG + +   +F+ MP++N+V+   ++ G   +  + E   LF  +  E     
Sbjct: 141 LVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPN 200

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             TFA+++ A A    + +G+++H+ ++K G   +VFV  +L++MY+KCG +EDA+ VF+
Sbjct: 201 PFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFN 260

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            M  +  V WNT++AG  L+    EAL L++E R +  KM   T++ +I++C  L  L  
Sbjct: 261 WMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLAL 320

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-CKNVISWNALIAGYG 409
           A+Q H+ +++HGF L     +AL D YSK G + DA ++F      +NV+SW A+I+G  
Sbjct: 321 ARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCI 380

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
            +G    AV LF +M  + + PN  T+ A+L A
Sbjct: 381 QNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA 413



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 153/339 (45%), Gaps = 3/339 (0%)

Query: 184 ARRLFDEMPERNL-VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
           AR   DE+P R+  V  N ++      G   E    F           S T + +++A  
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 243 GLELISVGKQLHSCALKMGFG-DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
            +    +G+QLH   +K G     V    +L+DMY KCGS+ +   VF+ M +K  V W 
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           +++ G A      E + L++ MR  G+  + FTF+ ++       +L+  ++ HA  V+ 
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKF 230

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           G    +   ++L++ Y+K G +EDA+ VF+ M  ++++SWN L+AG   +    EA++LF
Sbjct: 231 GCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLF 290

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
            +      +    T+  V+  C+         ++   + + H           + +   +
Sbjct: 291 HESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLK-HGFHLTGNVMTALADAYSK 349

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
            G L +A  +            W A+++ C  NG++ L 
Sbjct: 350 CGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/613 (36%), Positives = 361/613 (58%), Gaps = 34/613 (5%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC------ 178
           G    S T+  L+ +C  L++ +E  ++  ++L  G+E DLY+   ++ M+V+       
Sbjct: 58  GLLPNSYTFPFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDA 117

Query: 179 -------------------------GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
                                    G +  AR +FDE+P +++VS N +I+G +++G+Y 
Sbjct: 118 HKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYK 177

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA  LF ++ +        T  T+I ASA    I +G+Q+HS     GFG N+ +  ALI
Sbjct: 178 EALELFKEMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALI 237

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           D YSKCG +E A G+F  +S K  + WN +I GY      +EAL L+ EM  SG   +  
Sbjct: 238 DFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDV 297

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN--SALVDFYSKWGRIEDARHVFD 391
           T   I+  C  L +++  +  H  + +   G+   ++  ++L+D YSK G IE A  VF+
Sbjct: 298 TMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFN 357

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
            ML K++ +WNA+I G+  HGR   A ++F +M  N ++P+ +TF+ +LSACS +G+ + 
Sbjct: 358 SMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDL 417

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
           G  IF+SM+ ++KI P+  HY CMI+LLG  GL  EA  +I     +    +W +LL AC
Sbjct: 418 GRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKAC 477

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           +++GN+ELG+  A+ L+ +EP    +YV+L NIY ++G+  E A +   L  KG++ +P 
Sbjct: 478 KMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPG 537

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQR 630
           CS IE+    H F+ GD+ H + +EIY  ++ M + + + G+VP+   +L +++E+ ++ 
Sbjct: 538 CSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEG 597

Query: 631 VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFH 690
            L +HSEKLA+AFGLI+T   T L IV++ R+C +CH A KLI+ +  REI+ RD +RFH
Sbjct: 598 ALRHHSEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFH 657

Query: 691 HFKDGMCSCGDYW 703
           HF+DG+CSC DYW
Sbjct: 658 HFRDGVCSCNDYW 670



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 131/449 (29%), Positives = 203/449 (45%), Gaps = 74/449 (16%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A  +F+ + E NL+  N +  G   S D + A  L++ +        S TF  ++++ A 
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L+    G Q+H   LK+G+  +++V  +LI MY +   +EDA  VFD  S +  V +  +
Sbjct: 76  LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTAL 135

Query: 304 IAGYALHGYSE-------------------------------EALDLYYEMRDSGVKMDH 332
           + GYA  GY E                               EAL+L+ EM  + V+ D 
Sbjct: 136 VTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDE 195

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
            T   +I    R  S+E  +Q H+ +  HGFG ++   +AL+DFYSK G +E A  +F  
Sbjct: 196 STMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLG 255

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC--------- 443
           +  K+VISWN LI GY +    +EA+ LF++ML +G  PN VT L++L AC         
Sbjct: 256 LSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIG 315

Query: 444 ----------------------------SRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
                                       S+ G  E   ++F SM   HK  P        
Sbjct: 316 RWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSML--HKSLPAWNAMIFG 373

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL---YGMEP 532
             + GR     + F+ +R    K     +  LL+AC   G L+LG+     +   Y + P
Sbjct: 374 FAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITP 433

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            KL +Y  ++++   SG  KEA E+I T+
Sbjct: 434 -KLEHYGCMIDLLGHSGLFKEAEEMISTM 461


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/633 (36%), Positives = 366/633 (57%), Gaps = 13/633 (2%)

Query: 83  SSLPDTQM------KKPSAGICSQ---IEKLVLNKRYREALELFEILEFEGGFDVGSSTY 133
           S L D +M      K P+A + S    I   V +     ALEL   ++   G      T 
Sbjct: 251 SKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMK-SSGLVPNVFTL 309

Query: 134 DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193
            +++ AC G  +    +++  +M+    + D ++   ++ M+ + G + DAR++FD MP 
Sbjct: 310 SSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPR 369

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD--CGSRTFATMIRASAGLELISVGK 251
           R+L+  N +I+G    G + E   LF  + +E  D      T A++++++A  E I   +
Sbjct: 370 RDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTR 429

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           Q+H+ A K+G   +  V   LID Y KCG ++ A  VF E      +   T++   +   
Sbjct: 430 QVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCD 489

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
           + E+A+ L+ +M   G++ D F  S ++  CT L++ E  KQ HA L++  F  D+ A +
Sbjct: 490 HGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGN 549

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           ALV  Y+K G IEDA   F  +  + ++SW+A+I G   HG G+ A++LF +ML  G+ P
Sbjct: 550 ALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAP 609

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           NH+T  +VLSAC+ +GL +   + F+SM     I     HYACMI++LGR G L++A  L
Sbjct: 610 NHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMEL 669

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           +   PF+    +W ALL A RV+ + ELG+ AAEKL+ +EPEK   +V+L N Y S+G  
Sbjct: 670 VNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMW 729

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
            E A+V + ++   ++  PA SW+E+K + H F+ GD+SH  T++IY K+  +   ++K 
Sbjct: 730 DEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKA 789

Query: 612 GYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           GYVP  +  L DVD  E+  +LS+HSE+LAVAF LI+T    P+++ ++ RIC DCH A 
Sbjct: 790 GYVPNVEVDLHDVDRSEKELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHVAF 849

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           K I+ +  REI++RD +RFHHF +G CSCGDYW
Sbjct: 850 KYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/380 (30%), Positives = 193/380 (50%), Gaps = 19/380 (5%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           RS+     + S++L +G        N +L ++ RC +   AR +FDE+P+   VS + ++
Sbjct: 18  RSLFAGAHLHSHLLKSGLLAGF--SNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLV 75

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
               ++G   +A L F  +      C       +++ +  +     G Q+H+ A+     
Sbjct: 76  TAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDVRF---GAQVHALAVATRLV 132

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEM----SEKTTVGWNTIIAGYALHGYSEEALDL 319
            +VFV+ AL+ +Y   G +++A+ +FDE      E+  V WNT+I+ Y  +  S +A+ +
Sbjct: 133 HDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGV 192

Query: 320 YYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379
           + EM  SG + + F FS ++  CT    LE  +Q H  +VR G+  D+   +ALVD YSK
Sbjct: 193 FREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSK 252

Query: 380 WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
            G IE A  VF+KM   +V+SWNA I+G   HG    A+EL  QM  +G+ PN  T  +V
Sbjct: 253 LGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSV 312

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRA----MHYACMIELLGREGLLDEAFALIRGA 495
           L AC+ +G    G +I   M     +K  A         ++++  + G LD+A  +    
Sbjct: 313 LKACAGAGAFNLGRQIHGFM-----VKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFM 367

Query: 496 PFKTTKNMWAALLTACRVNG 515
           P +    +W AL++ C  +G
Sbjct: 368 PRRDLI-LWNALISGCSHDG 386



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 166/310 (53%), Gaps = 12/310 (3%)

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM----PERNLVSCNM 201
           +R   +V +  ++T    D+++ N ++ ++   GM+ +ARR+FDE      ERN VS N 
Sbjct: 116 VRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNT 175

Query: 202 IIAGMI---DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCAL 258
           +I+  +    SGD +  F   +   E  ++ G   F+ ++ A  G   +  G+Q+H   +
Sbjct: 176 MISAYVKNDQSGDAIGVFREMVWSGERPNEFG---FSCVVNACTGSRDLEAGRQVHGAVV 232

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
           + G+  +VF + AL+DMYSK G IE A  VF++M     V WN  I+G   HG+   AL+
Sbjct: 233 RTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALE 292

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378
           L  +M+ SG+  + FT S +++ C    +    +Q H  +V+     D      LVD Y+
Sbjct: 293 LLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYA 352

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG--MRPNHVTF 436
           K G ++DAR VFD M  +++I WNALI+G  + GR  E + LF +M   G  +  N  T 
Sbjct: 353 KHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTL 412

Query: 437 LAVLSACSRS 446
            +VL + + S
Sbjct: 413 ASVLKSTASS 422



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 233/470 (49%), Gaps = 12/470 (2%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I   V N +  +A+ +F  + + G        +  +++AC G R +   ++V   ++ 
Sbjct: 175 TMISAYVKNDQSGDAIGVFREMVWSGE-RPNEFGFSCVVNACTGSRDLEAGRQVHGAVVR 233

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           TG+E D++  N ++ M+ + G +  A  +F++MP  ++VS N  I+G +  G    A  L
Sbjct: 234 TGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALEL 293

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
            L +          T +++++A AG    ++G+Q+H   +K     + FV+  L+DMY+K
Sbjct: 294 LLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAK 353

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD--HFTFS 336
            G ++DA+ VFD M  +  + WN +I+G +  G   E L L++ MR  G+ +D    T +
Sbjct: 354 HGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLA 413

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            +++      ++ H +Q HA   + G   D    + L+D Y K G+++ A  VF +    
Sbjct: 414 SVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSD 473

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           ++IS   ++        GE+A++LF QML  G+ P+     ++L+AC+     E+G ++ 
Sbjct: 474 DIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVH 533

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
             + +  +          ++    + G +++A     G P +   + W+A++     +G+
Sbjct: 534 AHLIK-RQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVS-WSAMIGGLAQHGH 591

Query: 517 LELGKFAAEKLYGMEPEKLS-NYVVLLNIY---NSSGKLKEAAEVIRTLR 562
              GK A +  + M  E ++ N++ L ++    N +G + +A +   +++
Sbjct: 592 ---GKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMK 638


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/600 (37%), Positives = 359/600 (59%), Gaps = 19/600 (3%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N R  +A  LF+        D    +++ L+   +  + + + + +F  M       D
Sbjct: 195 VQNGRIEDARRLFD-----SKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR----D 245

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
               N ++  + + G++ +ARRLF+E+P R++ +   +++G + +G   EA  +F    E
Sbjct: 246 KISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIF----E 301

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
           E  +    ++  MI      + I   ++L           N      ++  Y++CG+I+ 
Sbjct: 302 EMPEKNEVSWNAMIAGYVQSQQIEKAREL----FDQMPSRNTSSWNTMVTGYAQCGNIDQ 357

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+ +FDEM ++  + W  +I+GYA  G SEEAL L+ +M+  G  ++    +  +  C  
Sbjct: 358 AKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSCAE 417

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           +A+LE  KQ H  LV+ GF    +A +AL+  Y K G IE+A  VF+ +  K+++SWN +
Sbjct: 418 IAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTM 477

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           IAGY  HG G+EA+ LFE M +  ++P+ VT + VLSACS +G  ++G E F SM +++ 
Sbjct: 478 IAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYG 536

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           I   A HY CMI+LLGR G LDEA  L++  PF      W ALL A R++G+ ELG+ AA
Sbjct: 537 ITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTELGEKAA 596

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
           EK++ MEP+    YV+L N+Y +SG+ +E  E+   +R KG++ +P  SW+E++ + H+F
Sbjct: 597 EKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQNKTHIF 656

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAF 643
             GD SH + + IY  ++ + LE+ K G+V   K +L DV+E+E + +L YHSEKLAVAF
Sbjct: 657 TVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAF 716

Query: 644 GLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           G+++     P++++++ R+C DCHNAIK I+ +T R+I+VRD++RFHHF +G CSCGDYW
Sbjct: 717 GILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 191/409 (46%), Gaps = 62/409 (15%)

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
           ST  + D+   NR +  ++R G    A  +F+ M  R+ V+ N +I+G + +  +     
Sbjct: 53  STIVDSDIVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKF----- 107

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
                     DC  + F  M       +LIS                NV +S      Y 
Sbjct: 108 ----------DCARKVFEKM----PDRDLISW---------------NVMLSG-----YV 133

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           K G++  A+ +F++M EK  V WN +++G+A +G+ EEA  ++ +M    +  +  +++ 
Sbjct: 134 KNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQM----LVKNEISWNG 189

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           ++    +   +E A++    L       +IV+ + L+  Y +  R++DAR +FD+M  ++
Sbjct: 190 LLSAYVQNGRIEDARR----LFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVRD 245

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
            ISWN +I GY  +G   EA  LFE++ +  +      + A++S   ++G+ +    IF+
Sbjct: 246 KISWNIMITGYAQNGLLSEARRLFEELPIRDV----FAWTAMVSGFVQNGMLDEATRIFE 301

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
            M   +++      +  MI    +   +++A  L    P + T + W  ++T     GN+
Sbjct: 302 EMPEKNEVS-----WNAMIAGYVQSQQIEKARELFDQMPSRNTSS-WNTMVTGYAQCGNI 355

Query: 518 ELGKFAAEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
           +  K     L+   P++   ++  +++ Y  SG+ +EA  +   ++R G
Sbjct: 356 DQAKI----LFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDG 400


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/699 (34%), Positives = 388/699 (55%), Gaps = 22/699 (3%)

Query: 7   RYQSVALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECCLMEQGL 66
           ++    L  +   C+ + S    KVL   +L SGC             + + C L++   
Sbjct: 48  KFSKFTLSTVLKGCANTGSLREGKVLHALALRSGCEID----------EFLGCSLVDM-- 95

Query: 67  KPRPKPNKIYTEELKESSLPDTQMKKPSA-GICSQIEKLVLNKRYREALELFEILEFEGG 125
               K   +Y + LK      T+++ P      + I  L      +EA ELF ++  +G 
Sbjct: 96  --YSKCGTVY-DALKVF----TKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGA 148

Query: 126 FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
                 T  +L+S    +  +R  + +   +   GFE D  + N +++M+++   + D  
Sbjct: 149 -RPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGN 207

Query: 186 RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
           ++F+ M   +LVS N +++G  DS        +F  +  E       TF +++R+ + L 
Sbjct: 208 KVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLL 267

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
               GKQ+H+  +K    D+ FV  AL+DMY+K   +EDA   FD +  +    W  II+
Sbjct: 268 DPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIIS 327

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
           GYA    +E+A+  + +M+  G+K + +T +  +  C+ +A+LE+ +Q HA  V+ G   
Sbjct: 328 GYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFG 387

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           DI   SALVD Y K G +E A  +F  ++ ++++SWN +I+GY  HG+GE+A+E F  ML
Sbjct: 388 DIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMML 447

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
             G+ P+  TF+ VLSACS  GL E G + F SMS+ + I P   HYACM+++LGR G  
Sbjct: 448 SEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKF 507

Query: 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
           +E    I          +W  +L AC+++GN++ G+ AA+KL+ MEP   S+Y++L NI+
Sbjct: 508 NEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIF 567

Query: 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
            S G+  +   +   +  +G++  P CSW+EV  Q HVFLS D SH + +EIY K+D++ 
Sbjct: 568 ASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLG 627

Query: 606 LEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICC 664
             +   GYVP+ + +L +V  +E+   L YHSE+LA++F L++T+   P++I ++ RIC 
Sbjct: 628 QSLMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICE 687

Query: 665 DCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           DCH+ +KLI+ +T +EIVVRD  RFHHFK G CSC D W
Sbjct: 688 DCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 89/261 (34%), Positives = 145/261 (55%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A RLF  MPE+N VS N ++ G    GD  +   LF  + E  +     T +T+++  A 
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
              +  GK LH+ AL+ G   + F+ C+L+DMYSKCG++ DA  VF ++     V W+ +
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I G    G+ +EA +L++ MR  G + + FT S ++   T +  L + +  H  + ++GF
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGF 183

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             D + ++ L+  Y K   +ED   VF+ M   +++SWNAL++G+ +         +F Q
Sbjct: 184 ESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQ 243

Query: 424 MLLNGMRPNHVTFLAVLSACS 444
           MLL G +PN  TF++VL +CS
Sbjct: 244 MLLEGFKPNMFTFISVLRSCS 264



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 90/166 (54%)

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           +E A+ +F  M EK  V WN ++ GYA  G  ++ L L+ +M++   K   FT S +++ 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C    SL   K  HA  +R G  +D     +LVD YSK G + DA  VF K+   +V++W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
           +A+I G    G G+EA ELF  M   G RPN  T  +++S  +  G
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMG 166



 Score = 44.3 bits (103), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 13/152 (8%)

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           +E A  +F  M  KN +SWNAL+ GY   G G++ ++LF +M     + +  T   VL  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
           C+ +G S R  ++  +++     +        ++++  + G + +A  +     F   +N
Sbjct: 61  CANTG-SLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKV-----FTKIRN 114

Query: 503 ----MWAALLTACRVNGNLELGKFAAEKLYGM 530
                W+A++T     G+   G+ AAE  + M
Sbjct: 115 PDVVAWSAMITGLDQQGH---GQEAAELFHLM 143


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/549 (40%), Positives = 344/549 (62%), Gaps = 1/549 (0%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           ++  G   D    N ++ M+ +CG++  AR+LFDEMP R+LVS N ++     +GD  +A
Sbjct: 73  IIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKA 132

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
            +LF+ + +E + C   T ++++ A A    +   KQLH  ALK     NVFV  AL+D+
Sbjct: 133 LVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDV 192

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           Y+KCG ++DA  VF+ M E++ V W++++AGY  +   EEAL L++  +  G++ + FT 
Sbjct: 193 YAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTI 252

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
           S  +  C   A+L   KQ  A   + G G +I   S+L+D Y+K G IE+A  VF  +  
Sbjct: 253 SSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEE 312

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           KNV+ WNA+++G+  H R  EA+  FE+M   G+ PN +T+++VLSACS  GL E+G + 
Sbjct: 313 KNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKY 372

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F  M R H + P  +HY+CM+++LGR GLL EA   I   PF  T +MW +LL +CR+  
Sbjct: 373 FDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYR 432

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575
           NLEL + AA+ L+ +EP    N+V+L NIY ++ + +E A     L+    +     SWI
Sbjct: 433 NLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWI 492

Query: 576 EVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSY 634
           E+K + H F+ G+++H +  EIY K++ ++ E+ K GY  + +  L DV+E ++Q +L +
Sbjct: 493 EIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRH 552

Query: 635 HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKD 694
           HSEKLA+ FG++      P++I+++ RIC DCH+ +KL + +T REI+VRD +RFHHFK+
Sbjct: 553 HSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKN 612

Query: 695 GMCSCGDYW 703
           G CSCG++W
Sbjct: 613 GYCSCGEFW 621



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 176/340 (51%), Gaps = 9/340 (2%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +AL LF  ++ EG       T  +++ AC     + E K++  + L T  + ++++   +
Sbjct: 131 KALVLFMQMQKEGT-SCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTAL 189

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L ++ +CG++ DA  +F+ MPER+ V+ + ++AG + +  Y EA +LF        +   
Sbjct: 190 LDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQ 249

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T ++ + A A    +  GKQ+ + + K G G N+FV  +LIDMY+KCG IE+A  VF  
Sbjct: 250 FTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSS 309

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           + EK  V WN I++G++ H  S EA+  + +M+  G+  +  T+  ++  C+ L  +E  
Sbjct: 310 VEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKG 369

Query: 352 KQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WNALIAG-- 407
           ++    ++R H    +++  S +VD   + G + +A+   D+M      S W +L+A   
Sbjct: 370 RKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCR 429

Query: 408 -YGNHGRGEEAVE-LFEQMLLNGMRPNHVTFLAVLSACSR 445
            Y N    E A + LFE    N    NHV    + +A  R
Sbjct: 430 IYRNLELAEVAAKHLFEIEPHNA--GNHVLLSNIYAANDR 467



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 138/261 (52%), Gaps = 2/261 (0%)

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G   H+  +++G   +   S  L++MYSKCG +E A+ +FDEM  ++ V WNT++  +  
Sbjct: 66  GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQ 125

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +G  E+AL L+ +M+  G     FT S ++  C     +   KQ H   ++     ++  
Sbjct: 126 NGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFV 185

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            +AL+D Y+K G ++DA  VF+ M  ++ ++W++++AGY  +   EEA+ LF +    G+
Sbjct: 186 GTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGL 245

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
             N  T  + LSAC+       G ++ Q++S    I       + +I++  + G+++EA+
Sbjct: 246 EHNQFTISSALSACAARAALIEGKQV-QAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAY 304

Query: 490 ALIRGAPFKTTKNMWAALLTA 510
            +      K    +W A+L+ 
Sbjct: 305 TVFSSVEEKNVV-LWNAILSG 324


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/549 (40%), Positives = 344/549 (62%), Gaps = 1/549 (0%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           ++  G   D    N ++ M+ +CG++  AR+LFDEMP R+LVS N ++     +GD  +A
Sbjct: 46  IIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDCEKA 105

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
            +LF+ + +E + C   T ++++ A A    +   KQLH  ALK     NVFV  AL+D+
Sbjct: 106 LVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDV 165

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           Y+KCG ++DA  VF+ M E++ V W++++AGY  +   EEAL L++  +  G++ + FT 
Sbjct: 166 YAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTI 225

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
           S  +  C   A+L   KQ  A   + G G +I   S+L+D Y+K G IE+A  VF  +  
Sbjct: 226 SSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEE 285

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           KNV+ WNA+++G+  H R  EA+  FE+M   G+ PN +T+++VLSACS  GL E+G + 
Sbjct: 286 KNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKY 345

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F  M R H + P  +HY+CM+++LGR GLL EA   I   PF  T +MW +LL +CR+  
Sbjct: 346 FDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYR 405

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575
           NLEL + AA+ L+ +EP    N+V+L NIY ++ + +E A     L+    +     SWI
Sbjct: 406 NLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWI 465

Query: 576 EVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSY 634
           E+K + H F+ G+++H +  EIY K++ ++ E+ K GY  + +  L DV+E ++Q +L +
Sbjct: 466 EIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRH 525

Query: 635 HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKD 694
           HSEKLA+ FG++      P++I+++ RIC DCH+ +KL + +T REI+VRD +RFHHFK+
Sbjct: 526 HSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKN 585

Query: 695 GMCSCGDYW 703
           G CSCG++W
Sbjct: 586 GYCSCGEFW 594



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 177/345 (51%), Gaps = 9/345 (2%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N    +AL LF  ++ EG       T  +++ AC     + E K++  + L T  + +++
Sbjct: 99  NGDCEKALVLFMQMQKEGT-SCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVF 157

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   +L ++ +CG++ DA  +F+ MPER+ V+ + ++AG + +  Y EA +LF       
Sbjct: 158 VGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMG 217

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            +    T ++ + A A    +  GKQ+ + + K G G N+FV  +LIDMY+KCG IE+A 
Sbjct: 218 LEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAY 277

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VF  + EK  V WN I++G++ H  S EA+  + +M+  G+  +  T+  ++  C+ L 
Sbjct: 278 TVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLG 337

Query: 347 SLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WNAL 404
            +E  ++    ++R H    +++  S +VD   + G + +A+   D+M      S W +L
Sbjct: 338 LVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSL 397

Query: 405 IAG---YGNHGRGEEAVE-LFEQMLLNGMRPNHVTFLAVLSACSR 445
           +A    Y N    E A + LFE    N    NHV    + +A  R
Sbjct: 398 LASCRIYRNLELAEVAAKHLFEIEPHNA--GNHVLLSNIYAANDR 440



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 138/261 (52%), Gaps = 2/261 (0%)

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G   H+  +++G   +   S  L++MYSKCG +E A+ +FDEM  ++ V WNT++  +  
Sbjct: 39  GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQ 98

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +G  E+AL L+ +M+  G     FT S ++  C     +   KQ H   ++     ++  
Sbjct: 99  NGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFV 158

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            +AL+D Y+K G ++DA  VF+ M  ++ ++W++++AGY  +   EEA+ LF +    G+
Sbjct: 159 GTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGL 218

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
             N  T  + LSAC+       G ++ Q++S    I       + +I++  + G+++EA+
Sbjct: 219 EHNQFTISSALSACAARAALIEGKQV-QAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAY 277

Query: 490 ALIRGAPFKTTKNMWAALLTA 510
            +      K    +W A+L+ 
Sbjct: 278 TVFSSVEEKNVV-LWNAILSG 297


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/648 (34%), Positives = 373/648 (57%), Gaps = 49/648 (7%)

Query: 101 IEKLVLNKRYREALELF-------EILEFEG-GFDVGSSTYDALISACIGLRSIREVKRV 152
           +E+L    R+ EA+++        E ++  G      +STY  LI  C   R++ E K+V
Sbjct: 48  VERLCRANRFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKV 107

Query: 153 FSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDY 212
             ++ ++GF P + + NR+L M+ +CG ++DAR++FDEMP R+L S N+++ G  + G  
Sbjct: 108 HEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLL 167

Query: 213 LEAFLLFLDLWEEFSDCGSRTFATMI-------RASAGLELISV---------------- 249
            EA  LF    +E ++  S ++  M+       +    L L S+                
Sbjct: 168 EEARKLF----DEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSI 223

Query: 250 -------------GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
                        GK++H   ++ G   +  +  +L+DMY KCG I++A+ +FD++ EK 
Sbjct: 224 AVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKD 283

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
            V W ++I  Y       E   L+ E+  S  + + +TF+ ++  C  L + E  KQ H 
Sbjct: 284 VVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHG 343

Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
            + R GF     A+S+LVD Y+K G IE A+HV D     +++SW +LI G   +G+ +E
Sbjct: 344 YMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDE 403

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
           A++ F+ +L +G +P+HVTF+ VLSAC+ +GL E+G E F S++  H++   + HY C++
Sbjct: 404 ALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLV 463

Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
           +LL R G  ++  ++I   P K +K +WA++L  C   GN++L + AA++L+ +EPE   
Sbjct: 464 DLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPV 523

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKE 596
            YV + NIY ++GK +E  ++ + ++  G+   P  SW E+K++ HVF++ D SH    +
Sbjct: 524 TYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQ 583

Query: 597 IYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQ 655
           I   +  +  ++ + GYVP    +L DV DEQ++  L YHSEKLAVAF +++T + T ++
Sbjct: 584 IVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIK 643

Query: 656 IVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + ++ R C DCH AIK I+ +T R+I VRD++RFH F++G CSCGDYW
Sbjct: 644 VFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/573 (37%), Positives = 349/573 (60%), Gaps = 2/573 (0%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           + +++ +C+   S+R  +++   +L +G  PD  +  +++ ++  CG +  ARRLFD MP
Sbjct: 65  HTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGMP 124

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           +RN+   N++I      G    A  L+  + E   +  + T+  +++A A L  +  G++
Sbjct: 125 KRNVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNFTYPLVLKACAALLDLETGRE 184

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H       +G +VFV   ++DMY+KCG ++DA+ VFD ++ +  V WN++IA Y  +G 
Sbjct: 185 VHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGR 244

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
             EAL L  +M  +G+     T    +      A+L   ++ H    R GFGL     ++
Sbjct: 245 PMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTS 304

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRP 431
           LVD Y+K G ++ AR +F++++ + ++SWNA+I GYG HG  +EA+ LF +M  +  + P
Sbjct: 305 LVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTP 364

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           +++TF+ VLSAC+  G+ E   E F  M   + IKP   HY C+I++LG  G  +EA+ L
Sbjct: 365 DNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDL 424

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           I+G   +    +W ALL  C+++ N+ELG+ A +KL  +EPE   NYV L NIY  SGK 
Sbjct: 425 IKGMSIEPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVHLSNIYAQSGKW 484

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
           ++AA V + +  +GL+ + ACSWIE+K + H FL GD SH ++ EIY +++R+   +S  
Sbjct: 485 EKAARVRKLMTNRGLKKILACSWIELKGKTHGFLVGDASHPRSDEIYGELERLEGLMSDA 544

Query: 612 GYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           GYVP+   +  +VD+ E+R ++  HSE+LA+AFGLI+T   T L + ++ R+C DCH  I
Sbjct: 545 GYVPDIIPVFHNVDDDEKRNMVRSHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVI 604

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           KLI+ +  REI++RD +R+HHF +G CSC DYW
Sbjct: 605 KLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  118 bits (296), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 169/341 (49%), Gaps = 4/341 (1%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           E G +  + TY  ++ AC  L  +   + V   +  T +  D+++   V+ M+ +CG + 
Sbjct: 156 EHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVD 215

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
           DAR +FD +  R+ V  N +IA    +G  +EA  L  D+          T  + + A+A
Sbjct: 216 DARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAA 275

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
               +  G++LH    + GFG    +  +L+DMY+K G ++ A+ +F+++ ++  V WN 
Sbjct: 276 DAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNA 335

Query: 303 IIAGYALHGYSEEALDLYYEMR-DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR- 360
           +I GY +HG+++EAL L+ +M+ D+ V  D+ TF  ++  C     +E AK+    +V  
Sbjct: 336 MICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNA 395

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVE 419
           +     +   + ++D     GR E+A  +   M +  +   W AL+ G   H +  E  E
Sbjct: 396 YSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIH-KNVELGE 454

Query: 420 LFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           L  Q L+     +   ++ + +  ++SG  E+   + + M+
Sbjct: 455 LALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMT 495


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/572 (38%), Positives = 348/572 (60%), Gaps = 2/572 (0%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y +L+ +CI  +++   K++ + +   G   +L +  +++  +  C  + +A  LFD++P
Sbjct: 61  YASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKIP 120

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           + NL   N++I     +G +  A  L+  + E      + T   +++A + L  I  G+ 
Sbjct: 121 KGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIGEGRV 180

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H   ++ G+  +VFV  AL+DMY+KCG + DA+ VFD++ ++  V WN+++A YA +G+
Sbjct: 181 IHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGH 240

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            +E+L L  EM   GV+    T   +I     +A L H ++ H    RHGF  +    +A
Sbjct: 241 PDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTA 300

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D Y+K G ++ A  +F+++  K V+SWNA+I GY  HG   EA++LFE+M+    +P+
Sbjct: 301 LIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEA-QPD 359

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
           H+TF+  L+ACSR  L + G  ++  M RD +I P   HY CM++LLG  G LDEA+ LI
Sbjct: 360 HITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLI 419

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
           R         +W ALL +C+ +GN+EL + A EKL  +EP+   NYV+L N+Y  SGK +
Sbjct: 420 RQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQSGKWE 479

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
             A + + +  KG++   ACSWIEVK + + FLSGD SH  +  IY ++ R+   + + G
Sbjct: 480 GVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAG 539

Query: 613 YVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           YVP+  ++  DV+E E+  ++  HSE+LA+AFGLI+T   T L I ++ RIC DCH AIK
Sbjct: 540 YVPDTGSVFHDVEEDEKTDMVCSHSERLAIAFGLISTLPGTRLLITKNLRICEDCHVAIK 599

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            I+ +T REI VRD +R+HHF+ G+CSCGDYW
Sbjct: 600 FISKITEREITVRDVNRYHHFRHGLCSCGDYW 631



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 170/328 (51%), Gaps = 6/328 (1%)

Query: 101 IEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           I     N  +  A+ L+ ++LE+  G    + T   ++ AC  L +I E + +   ++ +
Sbjct: 131 IRAYAWNGPHETAISLYHQMLEY--GLKPDNFTLPFVLKACSALSTIGEGRVIHERVIRS 188

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           G+E D+++   ++ M+ +CG ++DAR +FD++ +R+ V  N ++A    +G   E+  L 
Sbjct: 189 GWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLC 248

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
            ++  +       T  T+I +SA +  +  G+++H    + GF  N  V  ALIDMY+KC
Sbjct: 249 CEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKC 308

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           GS++ A  +F+ + EK  V WN II GYA+HG + EALDL+  M     + DH TF   +
Sbjct: 309 GSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKEA-QPDHITFVGAL 367

Query: 340 RICTRLASLEHAKQAHAGLVRH-GFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKN 397
             C+R   L+  +  +  +VR       +   + +VD     G++++A  +  +M +  +
Sbjct: 368 AACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPD 427

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQML 425
              W AL+     HG  E A    E+++
Sbjct: 428 SGVWGALLNSCKTHGNVELAEVALEKLI 455



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 65/114 (57%)

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
           +H+ ++ ++  C    +LE  KQ HA L + G   ++   + LV+FYS    + +A H+F
Sbjct: 57  NHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLF 116

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           DK+   N+  WN LI  Y  +G  E A+ L+ QML  G++P++ T   VL ACS
Sbjct: 117 DKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACS 170


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/551 (38%), Positives = 340/551 (61%), Gaps = 34/551 (6%)

Query: 187 LFDEMPER-NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
           LF++  ++ N+ S N +IA +  SGD +EA   F  + +        TF   I++ + L 
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE-------------- 291
            +  G+Q H  AL  GF  ++FVS AL+DMYSKCG + DA+ +FDE              
Sbjct: 91  DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 150

Query: 292 -----------------MSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHF 333
                            M+E+  + WN+IIA YA +G S E++++++ M +D  +  +  
Sbjct: 151 GYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAV 210

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           T S ++  C    S    K  H  +++ G   ++   ++++D Y K G++E AR  FD+M
Sbjct: 211 TLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRM 270

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             KNV SW+A++AGYG HG  +EA+E+F +M + G++PN++TF++VL+ACS +GL E GW
Sbjct: 271 REKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGW 330

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
             F++MS +  ++P   HY CM++LLGR G L EAF LI+G   +    +W ALL ACR+
Sbjct: 331 HWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRM 390

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACS 573
           + N++LG+ +A KL+ ++P+    YV+L NIY  +G+ ++   +   ++  GL   P  S
Sbjct: 391 HKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFS 450

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVL 632
            +++K + HVFL GD+ H Q ++IY  ++++ +++ + GYVP+  ++L DV  E+++ VL
Sbjct: 451 LVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVL 510

Query: 633 SYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHF 692
             HSEKLAVAFG++NT   T + I+++ R+C DCH AIK I+ +  REIVVRD+ RFHHF
Sbjct: 511 RVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHF 570

Query: 693 KDGMCSCGDYW 703
           +DG+CSCGDYW
Sbjct: 571 RDGLCSCGDYW 581



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/345 (30%), Positives = 163/345 (47%), Gaps = 65/345 (18%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           ST+   I +C  L  +   ++     L  GFEPDL++ + ++ M+ +CG + DAR LFDE
Sbjct: 77  STFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDE 136

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE-----------FSDCGSRT-----F 234
           +  RN+VS   +I G + + D   A  +F  + E            ++  G  T     F
Sbjct: 137 ISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIF 196

Query: 235 ATMIR----------------ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
             M++                A A      +GK +H   +KMG   NVFV  ++IDMY K
Sbjct: 197 HRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCK 256

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG +E A+  FD M EK    W+ ++AGY +HG+++EAL+++YEM  +GVK ++ TF  +
Sbjct: 257 CGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSV 316

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C+           HAGL+  G                 W   +   H FD  +   V
Sbjct: 317 LAACS-----------HAGLLEEG-----------------WHWFKAMSHEFD--VEPGV 346

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
             +  ++   G  G  +EA +L + M L   RP+ V + A+L AC
Sbjct: 347 EHYGCMVDLLGRAGYLKEAFDLIKGMKL---RPDFVVWGALLGAC 388


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/605 (38%), Positives = 363/605 (60%), Gaps = 3/605 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVK-RVFSYMLST 159
           I  +V N  +R+A+ ++  +  + GF   + T+  ++ AC  L     V   + S ++ T
Sbjct: 73  IRGMVSNDAFRDAVSVYASMR-QHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKT 131

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           GF+ D++++  ++ ++ + G + DAR++FDE+PE+N+VS   II G I+SG + EA  LF
Sbjct: 132 GFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLF 191

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
             L E      S T   ++ A + +  ++ G+ +     + G   NVFV+ +L+DMY+KC
Sbjct: 192 RGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKC 251

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           GS+E+A+ VFD M EK  V W+ +I GYA +G  +EALD+++EM+   V+ D +    + 
Sbjct: 252 GSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVF 311

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
             C+RL +LE    A   +    F  + V  +AL+DFY+K G +  A+ VF  M  K+ +
Sbjct: 312 SACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCV 371

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
            +NA+I+G    G    A  +F QM+  GM+P+  TF+ +L  C+ +GL + G   F  M
Sbjct: 372 VFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGM 431

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
           S    + P   HY CM++L  R GLL EA  LIR  P +    +W ALL  CR++ + +L
Sbjct: 432 SSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQL 491

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
            +   ++L  +EP    +YV+L NIY++S +  EA ++  +L +KG++ LP CSW+EV  
Sbjct: 492 AEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDG 551

Query: 580 QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEK 638
             H FL GD SH  + +IY K++ +  ++ + GY P  + +L DV+E+E+   L  HSEK
Sbjct: 552 VVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEKEYFLGCHSEK 611

Query: 639 LAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCS 698
           LAVAF LI+T     +++V++ R+C DCH AIKL++ VTGREI+VRD +RFHHF +G CS
Sbjct: 612 LAVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCS 671

Query: 699 CGDYW 703
           C DYW
Sbjct: 672 CRDYW 676



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 122/404 (30%), Positives = 205/404 (50%), Gaps = 6/404 (1%)

Query: 142 GLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNM 201
           GL+S+ + K+    +L  G   D Y+ N +L   +       A  +F + P  N+   N 
Sbjct: 12  GLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNT 71

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL-ELISVGKQLHSCALKM 260
           +I GM+ +  + +A  ++  + +      + TF  +++A   L     VG  LHS  +K 
Sbjct: 72  LIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKT 131

Query: 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY 320
           GF  +VFV   L+ +YSK G + DA+ VFDE+ EK  V W  II GY   G   EAL L+
Sbjct: 132 GFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLF 191

Query: 321 YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380
             + + G++ D FT   I+  C+R+  L   +     +   G   ++   ++LVD Y+K 
Sbjct: 192 RGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKC 251

Query: 381 GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
           G +E+AR VFD M+ K+V+ W+ALI GY ++G  +EA+++F +M    +RP+    + V 
Sbjct: 252 GSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVF 311

Query: 441 SACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTT 500
           SACSR G  E G      M  D  +    +  A +I+   + G + +A  + +G   K  
Sbjct: 312 SACSRLGALELGNWARGLMDGDEFLSNPVLGTA-LIDFYAKCGSVAQAKEVFKGMRRKDC 370

Query: 501 KNMWAALLTACRVNGNL--ELGKFAAEKLYGMEPEKLSNYVVLL 542
             ++ A+++   + G++    G F      GM+P+  + +V LL
Sbjct: 371 V-VFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDG-NTFVGLL 412



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 167/359 (46%), Gaps = 39/359 (10%)

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
           GL+ +   KQ H   L++G   + ++   L+       + + A  VF +        +NT
Sbjct: 12  GLKSLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNT 71

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA-HAGLVRH 361
           +I G   +    +A+ +Y  MR  G   D+FTF  +++ CTRL    H   + H+ +++ 
Sbjct: 72  LIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKT 131

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           GF  D+   + LV  YSK G + DAR VFD++  KNV+SW A+I GY   G   EA+ LF
Sbjct: 132 GFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLF 191

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSG-LSERGW------------EIFQSMSR------- 461
             +L  G+RP+  T + +L ACSR G L+   W             +F + S        
Sbjct: 192 RGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKC 251

Query: 462 ----------DHKIKPRAMHYACMIELLGREGLLDEA---FALIRGAPFKTTKNMWAALL 508
                     D  ++   + ++ +I+     G+  EA   F  ++    +        + 
Sbjct: 252 GSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVF 311

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVV---LLNIYNSSGKLKEAAEVIRTLRRK 564
           +AC   G LELG +A   + G   E LSN V+   L++ Y   G + +A EV + +RRK
Sbjct: 312 SACSRLGALELGNWARGLMDG--DEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRK 368


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/599 (36%), Positives = 360/599 (60%), Gaps = 2/599 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N+ + +A+ +F  L         + T   +I AC GL  +   + +           D++
Sbjct: 185 NELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVF 244

Query: 167 MRNRVLLMHVRCGMMIDA-RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
           + N ++ M+ +CG++ +A +R+FD M  + + S N ++ G   + D  +A  L+L + + 
Sbjct: 245 VGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDS 304

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
             D    T  +++ A + ++ +  G+++H  AL+ G   + F+  +L+ +Y  CG    A
Sbjct: 305 GLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAA 364

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
           Q +FD M  ++ V WN +IAGY+ +G  +EA++L+ +M   G++        +   C++L
Sbjct: 365 QVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQL 424

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           ++L   K+ H   ++     DI  +S+++D Y+K G I  ++ +FD++  K+V SWN +I
Sbjct: 425 SALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVII 484

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
           AGYG HGRG+EA+ELFE+ML  G++P+  TF  +L ACS +GL E G E F  M   H I
Sbjct: 485 AGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNI 544

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
           +P+  HY C++++LGR G +D+A  LI   P      +W++LL++CR++GNL LG+  A 
Sbjct: 545 EPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVAN 604

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
           KL  +EPEK  NYV++ N++  SGK  +   V   ++  GL+    CSWIEV  + H FL
Sbjct: 605 KLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFL 664

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFG 644
            GD+   + +E+     R+ ++IS  GY P+  ++L D++E+++  +L  HSEKLA++FG
Sbjct: 665 IGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFG 724

Query: 645 LINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           L+NT+   P+++ ++ RIC DCHNA K I+ V  R+IVVRD  RFHHF+DG+CSCGDYW
Sbjct: 725 LLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/377 (32%), Positives = 201/377 (53%), Gaps = 12/377 (3%)

Query: 77  TEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVG--SSTYD 134
           T + K  S  ++   +  + +  +I+KL  +   +EAL+  +    +   D    S    
Sbjct: 51  TRQTKSLSFANSSTNRQFSSL-HEIKKLCESGNLKEALDFLQRESDDVVLDSAQRSEAMG 109

Query: 135 ALISACIGLRSIREVKRVFSYMLS--TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
            L+ AC G R   EV R    M+S  T F  D  +  R++ M+  CG   D+R +FD++ 
Sbjct: 110 VLLQAC-GQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLR 168

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDL---WEEFSDCGSRTFATMIRASAGLELISV 249
            +NL   N I++    +  + +A  +F +L    E   D  + T   +I+A AGL  + +
Sbjct: 169 RKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPD--NFTLPCVIKACAGLLDLGL 226

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA-QGVFDEMSEKTTVGWNTIIAGYA 308
           G+ +H  A KM    +VFV  ALI MY KCG +E+A + VFD M  KT   WN ++ GYA
Sbjct: 227 GQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYA 286

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
            +    +ALDLY +M DSG+  D FT   ++  C+R+ SL + ++ H   +R+G  +D  
Sbjct: 287 QNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPF 346

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
              +L+  Y   G+   A+ +FD M  ++++SWN +IAGY  +G  +EA+ LF QML +G
Sbjct: 347 IGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDG 406

Query: 429 MRPNHVTFLAVLSACSR 445
           ++P  +  + V  ACS+
Sbjct: 407 IQPYEIAIMCVCGACSQ 423



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 158/342 (46%), Gaps = 43/342 (12%)

Query: 231 SRTFATMIRASAGLELISVGKQLHS-CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
           S     +++A    + I VG++LH   +    F ++  ++  +I MYS CGS  D++ VF
Sbjct: 105 SEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVF 164

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSMIIRICTRLASL 348
           D++  K    WN I++ Y  +   E+A+ ++ E+   +  K D+FT   +I+ C  L  L
Sbjct: 165 DKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDL 224

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA-RHVFDKMLCKNVISWNALIAG 407
              +  H    +     D+   +AL+  Y K G +E+A + VFD M  K V SWNAL+ G
Sbjct: 225 GLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCG 284

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           Y  +    +A++L+ QM  +G+ P+  T  ++L ACSR                      
Sbjct: 285 YAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM--------------------- 323

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK-FAAEK 526
           +++HY   I            FAL  G        +    L  C        GK FAA+ 
Sbjct: 324 KSLHYGEEI----------HGFALRNGLAVDPFIGISLLSLYIC-------CGKPFAAQV 366

Query: 527 LY-GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           L+ GME   L ++ V++  Y+ +G   EA  + R +   G++
Sbjct: 367 LFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQ 408



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 10/213 (4%)

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFS----MIIRICTRLASLEHAKQAHAGL-VRHGFGL 365
           G  +EALD      D  V +D    S    ++++ C +   +E  ++ H  +     F  
Sbjct: 81  GNLKEALDFLQRESDD-VVLDSAQRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCN 139

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           D V N+ ++  YS  G   D+R VFDK+  KN+  WNA+++ Y  +   E+A+ +F +++
Sbjct: 140 DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELI 199

Query: 426 -LNGMRPNHVTFLAVLSACSRSGLSERGW-EIFQSMSRDHKIKPRAMHYACMIELLGREG 483
            +   +P++ T   V+ AC  +GL + G  +I   M+    +         +I + G+ G
Sbjct: 200 SVTEHKPDNFTLPCVIKAC--AGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCG 257

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
           L++EA   +       T + W ALL     N +
Sbjct: 258 LVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSD 290


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/596 (36%), Positives = 356/596 (59%), Gaps = 6/596 (1%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + EA+ L+E ++ E        T+ +++SAC  L  + + +++ + + S G E DL ++N
Sbjct: 204 FEEAIRLYEDMDVEPSV----RTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQN 259

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            +L M+ RC  + DA ++F  +P R++VS + +IA   ++  + EA   +  +  E    
Sbjct: 260 ALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRP 319

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              TFA+++ A A +  +  G+ +H   L  G+   +    AL+D+Y+  GS+++A+ +F
Sbjct: 320 NYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLF 379

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG-VKMDHFTFSMIIRICTRLASL 348
           D++  +    W  +I GY+  G+    L+LY EM+++  V      +S +I  C  L + 
Sbjct: 380 DQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAF 439

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
             A+QAH+ +   G   D V  ++LV+ YS+WG +E AR VFDKM  ++ ++W  LIAGY
Sbjct: 440 ADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGY 499

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
             HG    A+ L+++M L G  P+ +TF+ VL ACS +GL E+G ++F S+  D+ + P 
Sbjct: 500 AKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPN 559

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
             HY+C+I+LL R G L +A  LI   P +     W++LL A R++ +++    AA ++ 
Sbjct: 560 IAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQIT 619

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
            ++P   ++YV+L N++  +G L   A V  T+  +G++     SWIEV  Q H F  GD
Sbjct: 620 KLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGD 679

Query: 589 QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLIN 647
            SH + +EI+ ++ R+  +I + GYVPE + +L DV E+E+  +L  HSEKLA+AFGLI 
Sbjct: 680 NSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIA 739

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T+  T L+I  + RIC DCH+A+K I+ +  REI+VRD+SRFH F+DG CSCGDYW
Sbjct: 740 TAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 124/459 (27%), Positives = 231/459 (50%), Gaps = 13/459 (2%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   +K      S +     N  YR AL+L++ ++ +    V    Y  ++ AC  ++++
Sbjct: 82  DAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMDLQPNPVV----YTTVLGACASIKAL 137

Query: 147 REVKRVFSYMLST-GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
            E K + S +  T G + D+ + N +L M+ +CG + DA+RLF+ M  R++ S N +IA 
Sbjct: 138 EEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAA 197

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
              SG + EA  L+ D+  E S    RTF +++ A + L L+  G+++H+     G   +
Sbjct: 198 YAQSGHFEEAIRLYEDMDVEPS---VRTFTSVLSACSNLGLLDQGRKIHALISSRGTELD 254

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
           + +  AL+ MY++C  ++DA  +F  +  +  V W+ +IA +A     +EA++ Y +M+ 
Sbjct: 255 LSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQL 314

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
            GV+ +++TF+ ++  C  +  L   +  H  ++ +G+ + +V  +ALVD Y+ +G +++
Sbjct: 315 EGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDE 374

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACS 444
           AR +FD++  ++   W  LI GY   G     +EL+ +M      P   + +  V+SAC+
Sbjct: 375 ARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACA 434

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
             G      +    +  D  I    +    ++ +  R G L+ A  +      + T   W
Sbjct: 435 SLGAFADARQAHSDIEADGMISDFVL-ATSLVNMYSRWGNLESARQVFDKMSSRDTL-AW 492

Query: 505 AALLTACRVNG--NLELGKFAAEKLYGMEPEKLSNYVVL 541
             L+     +G   L LG +   +L G EP +L+  VVL
Sbjct: 493 TTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVL 531



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 133/482 (27%), Positives = 238/482 (49%), Gaps = 55/482 (11%)

Query: 117 FEILEFEGG--FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLM 174
           F++ E + G  FD      DAL   C  L S+R++       +S     ++++ N ++  
Sbjct: 13  FQLKEEKAGSRFDSSGHYRDAL-RQCQDLESVRQIHD----RISGAASANVFLGNEIVRA 67

Query: 175 HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRT 233
           + +CG +  AR  FD +  +N  S   ++     +G Y  A    LDL++          
Sbjct: 68  YGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAA----LDLYKRMDLQPNPVV 123

Query: 234 FATMIRASAGLELISVGKQLHS-CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           + T++ A A ++ +  GK +HS  +   G   +V +  +L+ MY+KCGS+EDA+ +F+ M
Sbjct: 124 YTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERM 183

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
           S ++   WN +IA YA  G+ EEA+ LY +M    V+    TF+ ++  C+ L  L+  +
Sbjct: 184 SGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQGR 240

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           + HA +   G  LD+   +AL+  Y++   ++DA  +F ++  ++V+SW+A+IA +    
Sbjct: 241 KIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETD 300

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF-QSMSRDHKIKPRAMH 471
             +EA+E + +M L G+RPN+ TF +VL AC+  G    G  +  Q +   +KI    ++
Sbjct: 301 LFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKIT--LVN 358

Query: 472 YACMIELLGREGLLDEAFAL--------------IRGAPFK----------------TTK 501
              +++L    G LDEA +L              + G   K                TTK
Sbjct: 359 GTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTK 418

Query: 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEK---LSNYVV---LLNIYNSSGKLKEAA 555
                ++ +C ++    LG FA  +    + E    +S++V+   L+N+Y+  G L+ A 
Sbjct: 419 VPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESAR 478

Query: 556 EV 557
           +V
Sbjct: 479 QV 480


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 205/475 (43%), Positives = 308/475 (64%), Gaps = 5/475 (1%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
            +A+++++    + I  GKQLH+     GFG +  ++  L+++Y  C S+  A+ +FD +
Sbjct: 77  NYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRI 136

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            +     WN +I GYA +G  E A+ LYY+M D G+  D+FTF  +++ C  L+++EH +
Sbjct: 137 PKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAIEHGR 196

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN---VISWNALIAGYG 409
           + H  +V+ G+  D+   +AL+D Y+K G +  AR VFDK+L ++   V+SWNA+I GY 
Sbjct: 197 EIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYA 256

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            HG   EA++LFE+M     +P+H+TF+ VLSACS  GL E GW  F++M RD+KI P  
Sbjct: 257 MHGHATEALDLFEEMN-RVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTV 315

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HY CM++LLG  G LDEA+ LI          +W ALL +C+++ N+ELG+ A E+L  
Sbjct: 316 QHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIE 375

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           +EP+   NYV+L NIY  +GK +  A++ + +  + L+   ACSWIEVK + H FLSGD 
Sbjct: 376 LEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDT 435

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINT 648
           SH  + EIY +++R+   + + GY P   ++  DV D+++  ++  HSE+LA+AFGLI+T
Sbjct: 436 SHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLIST 495

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              T L I ++ RIC DCH AIK I+ +T REI VRD +R+HHFKDG+CSCGDYW
Sbjct: 496 PPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 550



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 180/363 (49%), Gaps = 14/363 (3%)

Query: 69  RPKPNKIYTEELKESSLPDT--QMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGG- 125
           RP P    +  LK +       Q + P+    S   +   N+ + +A+        E   
Sbjct: 11  RPSPCSALSSLLKPTFFASLSLQYQSPNPSFTSSAPQFDNNQTHLKAIPSCSNPHAESTC 70

Query: 126 FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
                S Y +L+ +CI  ++I+  K++ + +   GF  D  +  +++ ++  C  +  AR
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 186 RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
            LFD +P+ N+   N++I G   +G Y  A  L+  +++      + TF  +++A A L 
Sbjct: 131 LLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALS 190

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT---TVGWNT 302
            I  G+++H   ++ G+  +VFV  ALIDMY+KCG +  A+ VFD++  +     V WN 
Sbjct: 191 AIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNA 250

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I GYA+HG++ EALDL+ EM +   K DH TF  ++  C+    LE        ++R  
Sbjct: 251 MITGYAMHGHATEALDLFEEM-NRVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIR-D 308

Query: 363 FGLDIVAN--SALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAG---YGNHGRGEE 416
           + +D      + +VD     GR+++A ++  +M +  +   W AL+     + N   GE 
Sbjct: 309 YKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEI 368

Query: 417 AVE 419
           A+E
Sbjct: 369 ALE 371


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/616 (36%), Positives = 363/616 (58%), Gaps = 40/616 (6%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G    S T+  L+ +C   ++ +E +++  ++L  G++ DL++   ++ ++V+ G + DA
Sbjct: 129 GLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDA 188

Query: 185 RR-------------------------------LFDEMPERNLVSCNMIIAGMIDSGDYL 213
           R+                               LFDE+P +++VS N +I+G  ++G+Y 
Sbjct: 189 RKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYK 248

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA  LF ++ +        T  T++ A A    I +G+Q+HS     GFG N+ +  +L+
Sbjct: 249 EALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLM 308

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           D+YSKCG +E A G+F+ +  K  + WNT+I GY      +EAL L+ EM  SG + +  
Sbjct: 309 DLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDV 368

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN-----SALVDFYSKWGRIEDARH 388
           T   I+  C  L +++  +  H  + +    L    N     ++L+D Y+K G IE A  
Sbjct: 369 TMLSILPACAHLGAIDIGRWIHVYIDKR---LKSATNASSLRTSLIDMYAKCGDIEAAHQ 425

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           VF+ +L K++ SWNA+I G+  HGR + A ++F +M   G+ P+ +TF+ +LSACSRSG+
Sbjct: 426 VFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGM 485

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
            + G  IF++M++D+KI P+  HY CMI+LLG  GL  EA  +I     +    +W +LL
Sbjct: 486 LDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLL 545

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
            AC++ GN+ELG+  A+ L  +EPE    YV+L NIY ++G+  E A++   L  KG++ 
Sbjct: 546 KACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKK 605

Query: 569 LPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ- 627
           +P CS IE+    H F+ GD+ H + +EIY  ++ M + + K G+VP+   +L +++E+ 
Sbjct: 606 VPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEW 665

Query: 628 EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDAS 687
           ++  L +HSEKLA+AFGLI+T   T L IV++ R+C +CH A KLI+ +  REI+ RD +
Sbjct: 666 KEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRT 725

Query: 688 RFHHFKDGMCSCGDYW 703
           RFHHF+DG+CSC DYW
Sbjct: 726 RFHHFRDGVCSCNDYW 741



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 138/499 (27%), Positives = 235/499 (47%), Gaps = 76/499 (15%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL---LMHVRCGMMIDARRLFDEM 191
           +L+  C  L+S+R    + + M+ TG     Y  +++L   ++      +  A  +F+ +
Sbjct: 38  SLLHNCKTLQSLR---LIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETI 94

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            E NL+  N +  G   S D + A  L++ +        S TF  ++++ A  +    G+
Sbjct: 95  QEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQ 154

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA-------------------------- 285
           Q+H   LK+G+  ++FV  +LI +Y + G +EDA                          
Sbjct: 155 QIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRG 214

Query: 286 -----QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
                Q +FDE+  K  V WN +I+GYA  G  +EAL+L+ EM  + ++ D  T   ++ 
Sbjct: 215 YIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVS 274

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C +  S+E  +Q H+ +  HGFG ++   ++L+D YSK G +E A  +F+ +L K+VIS
Sbjct: 275 ACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVIS 334

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           WN LI GY +    +EA+ LF++ML +G RPN VT L++L AC+  G  + G  I   + 
Sbjct: 335 WNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYID 394

Query: 461 R---------------------------DHKIKPRAMH-----YACMIELLGREGLLDEA 488
           +                            H++    +H     +  MI      G  D A
Sbjct: 395 KRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAA 454

Query: 489 FAL---IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLL 542
           F +   +R    +     +  LL+AC  +G L+LG+     +   Y + P KL +Y  ++
Sbjct: 455 FDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITP-KLEHYGCMI 513

Query: 543 NIYNSSGKLKEAAEVIRTL 561
           ++   SG  KEA E+I  +
Sbjct: 514 DLLGHSGLFKEAEEMINNM 532


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/596 (36%), Positives = 356/596 (59%), Gaps = 6/596 (1%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + EA+ L+E ++ E        T+ +++SAC  L  + + +++ + + S G E DL ++N
Sbjct: 205 FEEAIRLYEDMDVEPSV----RTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQN 260

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            +L M+ RC  + DA ++F  +P R++VS + +IA   ++  + EA   +  +  E    
Sbjct: 261 ALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRP 320

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              TFA+++ A A +  +  G+ +H   L  G+   +    AL+D+Y+  GS+++A+ +F
Sbjct: 321 NYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLF 380

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG-VKMDHFTFSMIIRICTRLASL 348
           D++  +    W  +I GY+  G+    L+LY EM+++  V      +S +I  C  L + 
Sbjct: 381 DQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAF 440

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
             A+QAH+ +   G   D V  ++LV+ YS+WG +E AR VFDKM  ++ ++W  LIAGY
Sbjct: 441 ADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGY 500

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
             HG    A+ L+++M L G  P+ +TF+ VL ACS +GL E+G ++F S+  D+ + P 
Sbjct: 501 AKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPN 560

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
             HY+C+I+LL R G L +A  LI   P +     W++LL A R++ +++    AA ++ 
Sbjct: 561 IAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQIT 620

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
            ++P   ++YV+L N++  +G L   A V  T+  +G++     SWIEV  Q H F  GD
Sbjct: 621 KLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGD 680

Query: 589 QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLIN 647
            SH + +EI+ ++ R+  +I + GYVPE + +L DV E+E+  +L  HSEKLA+AFGLI 
Sbjct: 681 NSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIA 740

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T+  T L+I  + RIC DCH+A+K I+ +  REI+VRD+SRFH F+DG CSCGDYW
Sbjct: 741 TAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 125/460 (27%), Positives = 229/460 (49%), Gaps = 14/460 (3%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   +K      S +     N  YR AL+L++ ++ +    V    Y  ++ AC  + ++
Sbjct: 82  DAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMDLQPNPVV----YTTVLGACASIEAL 137

Query: 147 REVKRVFSYMLST-GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSC-NMIIA 204
            E K + S +  T G + D+ + N +L M+ +CG + DA+RLF+ M  R  VS  N +IA
Sbjct: 138 EEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIA 197

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
               SG + EA  L+ D+  E S    RTF +++ A + L L+  G+++H+     G   
Sbjct: 198 AYAQSGHFEEAIRLYEDMDVEPS---VRTFTSVLSACSNLGLLDQGRKIHALISSRGTEL 254

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           ++ +  AL+ MY++C  ++DA  +F  +  +  V W+ +IA +A     +EA++ Y +M+
Sbjct: 255 DLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQ 314

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
             GV+ +++TF+ ++  C  +  L   +  H  ++ +G+ + +V  +ALVD Y+ +G ++
Sbjct: 315 LEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLD 374

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSAC 443
           +AR +FD++  ++   W  LI GY   G     +EL+ +M      P   + +  V+SAC
Sbjct: 375 EARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISAC 434

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           +  G      +    +  D  I    +    ++ +  R G L+ A  +      + T   
Sbjct: 435 ASLGAFADARQAHSDIEADGMISDFVL-ATSLVNMYSRWGNLESARQVFDKMSSRDTL-A 492

Query: 504 WAALLTACRVNG--NLELGKFAAEKLYGMEPEKLSNYVVL 541
           W  L+     +G   L LG +   +L G EP +L+  VVL
Sbjct: 493 WTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVL 532



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 135/483 (27%), Positives = 239/483 (49%), Gaps = 56/483 (11%)

Query: 117 FEILEFEGG--FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLM 174
           F++ E + G  FD      DAL   C  L S+R++       +S     ++++ N ++  
Sbjct: 13  FQLKEEKAGSRFDSSGHYRDAL-RQCQDLESVRQIHD----RISGAASANVFLGNEIVRA 67

Query: 175 HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRT 233
           + +CG +  AR  FD +  +N  S   ++     +G Y  A    LDL++          
Sbjct: 68  YGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAA----LDLYKRMDLQPNPVV 123

Query: 234 FATMIRASAGLELISVGKQLHS-CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           + T++ A A +E +  GK +HS  +   G   +V +  +L+ MY+KCGS+EDA+ +F+ M
Sbjct: 124 YTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERM 183

Query: 293 SEKTTV-GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           S + +V  WN +IA YA  G+ EEA+ LY +M    V+    TF+ ++  C+ L  L+  
Sbjct: 184 SGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLLDQG 240

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           ++ HA +   G  LD+   +AL+  Y++   ++DA  +F ++  ++V+SW+A+IA +   
Sbjct: 241 RKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAET 300

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF-QSMSRDHKIKPRAM 470
              +EA+E + +M L G+RPN+ TF +VL AC+  G    G  +  Q +   +KI    +
Sbjct: 301 DLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKIT--LV 358

Query: 471 HYACMIELLGREGLLDEAFAL--------------IRGAPFK----------------TT 500
           +   +++L    G LDEA +L              + G   K                TT
Sbjct: 359 NGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTT 418

Query: 501 KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK---LSNYVV---LLNIYNSSGKLKEA 554
           K     ++ +C ++    LG FA  +    + E    +S++V+   L+N+Y+  G L+ A
Sbjct: 419 KVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESA 478

Query: 555 AEV 557
            +V
Sbjct: 479 RQV 481


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/593 (35%), Positives = 359/593 (60%), Gaps = 4/593 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +A+E F  +  +G  +    T+  +++AC  + +    ++V  +++ +GF  ++Y+++ +
Sbjct: 248 KAVEFFRYMHAQG-VECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQSAL 306

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG + +A+ + + M + ++VS N ++ G +  G   EA  LF ++         
Sbjct: 307 VDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDD 366

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            TF +++       +    K +H   +K GF +   VS AL+DMY+K G ++ A  VF++
Sbjct: 367 YTFPSVLNCCVVGSINP--KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEK 424

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M EK  + W +++ GYA +   EE+L ++ +MR +GV  D F  + I+  C  L  LE  
Sbjct: 425 MLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFG 484

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           KQ H   ++ G        ++LV  Y+K G ++DA  +F  M  K+VI+W A+I GY  +
Sbjct: 485 KQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIVGYAQN 544

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G+G  +++ ++ M+ +G RP+ +TF+ +L ACS +GL + G + FQ M++ + IKP   H
Sbjct: 545 GKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEH 604

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           YACMI+L GR G LDEA  L+     K    +W +LL+ACRV+ NLEL + AA  L+ +E
Sbjct: 605 YACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATNLFELE 664

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P     YV+L N+Y++S K  + A++ + ++ KG+   P CSW+E+  + + F+S D+ H
Sbjct: 665 PMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFISDDRGH 724

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSD 650
            +  EIY K+D ++L I + GYVP+    L D+D++ + V L+YHSEKLAVAFGL+    
Sbjct: 725 PREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGLLAAPP 784

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             P++I ++ R+C DCH+A+K I+ V  R I++RD++ FHHF++G CSCGDYW
Sbjct: 785 SAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 112/408 (27%), Positives = 204/408 (50%), Gaps = 43/408 (10%)

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA--------- 215
           +Y  N++L    + G + DAR+LFD+MP+++  S N +I+  ++ G  +EA         
Sbjct: 65  IYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSC 124

Query: 216 ----------------------FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL 253
                                 F LF  +  E       T  +++R  + L LI  G+ +
Sbjct: 125 KSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMI 184

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD--EMSEKTTVGWNTIIAGYALHG 311
           H   +K GF  NVFV   L+DMY+KC  + +A+ +F   E   K  V W  ++ GYA +G
Sbjct: 185 HGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNG 244

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
              +A++ +  M   GV+ + +TF  I+  C+ + +    +Q H  +V+ GFG ++   S
Sbjct: 245 DGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQS 304

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           ALVD Y+K G +++A+++ + M   +V+SWN+L+ G+  HG  EEA+ LF+ M    M+ 
Sbjct: 305 ALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKI 364

Query: 432 NHVTFLAVLSACSRSGLSERGWE--IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
           +  TF +VL+ C    ++ +     I ++   ++K+   A     ++++  + G +D A+
Sbjct: 365 DDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNA-----LVDMYAKTGDMDCAY 419

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKL 535
            +      K   + W +L+T    N + E  L  F   ++ G+ P++ 
Sbjct: 420 TVFEKMLEKDVIS-WTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQF 466



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 33/214 (15%)

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA------------------ 305
           ++++ +  L++  SK G + DA+ +FD+M +K    WNT+I+                  
Sbjct: 63  ESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGC 122

Query: 306 -------------GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
                        GY   G   EA DL+  MR  G K   FT   ++R+C+ L  ++  +
Sbjct: 123 SCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGE 182

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGN 410
             H  +V++GF  ++   + LVD Y+K   + +A  +F  +    KN + W A++ GY  
Sbjct: 183 MIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQ 242

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           +G G +AVE F  M   G+  N  TF  +L+ACS
Sbjct: 243 NGDGYKAVEFFRYMHAQGVECNQYTFPTILTACS 276


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/598 (35%), Positives = 359/598 (60%), Gaps = 2/598 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N    +AL  F  +   G          +++ A + L S    K +    + T  + + +
Sbjct: 229 NDIPEDALNTFSKMRMAGA-KPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPH 287

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   +L M+ +CG + DAR +F+ +P  +++  + +I+    S    +AF +FL +    
Sbjct: 288 VGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSS 347

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 + + +++A A +  + +G+Q+H+  +K+G+   +FV  AL+D+Y+KC ++E++ 
Sbjct: 348 VVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSL 407

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +F  + +   V WNTII GY   G++E+AL ++ EMR + V     TFS ++R C   A
Sbjct: 408 EIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTA 467

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           S++H  Q H+ + +  F  D +  ++L+D Y+K G I DA  VF+ ++  +V+SWNA+I+
Sbjct: 468 SIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIIS 527

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GY  HGR  +A+ELF +M  +  +PN VTF+A+LS C  +GL  +G  +F SM+ DH+IK
Sbjct: 528 GYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIK 587

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P   HY C++ LLGR G L++A   I   P   +  +W ALL++C V+ N+ LGKF+AEK
Sbjct: 588 PSMDHYTCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEK 647

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           +  +EP+  + YV+L N+Y ++G L + A + +++R  G++     SW+E+K + H F  
Sbjct: 648 VLEIEPQDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSV 707

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGL 645
           G   H   + I   ++ + L+ S+ GYVP+   +L DVDE+E+ R+L  HSE+LA+A+GL
Sbjct: 708 GSADHPDMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGL 767

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             T    P++I+++ R C DCH   K+I+ +  REIVVRD +RFHHF +G+CSCGDYW
Sbjct: 768 SMTPPGHPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 167/322 (51%), Gaps = 2/322 (0%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTG--FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193
           L+  CI     R  + V + ++  G   + D +  N +L ++ + G +  ARRLFD MPE
Sbjct: 53  LLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPE 112

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL 253
           RN+VS   ++ G    G + EA  LF  L  E  +       T+++    ++   +   +
Sbjct: 113 RNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAMDAPGLTCCI 172

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           H+CA K+G   N FV  +LID YS CG++  A+ VFD +  K  V W  +++ Y+ +   
Sbjct: 173 HACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIP 232

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
           E+AL+ + +MR +G K + F  + +++    L+S    K  H   V+     +     AL
Sbjct: 233 EDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGAL 292

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           +D Y+K G IEDAR VF+ +   +VI W+ LI+ Y    + E+A E+F +M+ + + PN 
Sbjct: 293 LDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNE 352

Query: 434 VTFLAVLSACSRSGLSERGWEI 455
            +   VL AC+     + G +I
Sbjct: 353 FSLSGVLQACANVAFLDLGQQI 374


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/596 (38%), Positives = 357/596 (59%), Gaps = 30/596 (5%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR---CGMMIDA---- 184
            + +L+ A   L+  +    + +  +  G + DLY+ N ++  + +    G + D     
Sbjct: 112 VFPSLLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKR 171

Query: 185 --------RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG-----S 231
                   +++FD MP R++VS N +IAG   +G Y+EA    LD+  E    G     S
Sbjct: 172 GESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEA----LDMVREMGKNGKLKPDS 227

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T ++++   A    ++ GK++H  A++ GF  +VF+  +LIDMY+KC  +E +   F  
Sbjct: 228 FTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYI 287

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           +  K  + WN+IIAG   +G  +  L  +  M    VK    +FS +I  C  L +L   
Sbjct: 288 LPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLG 347

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           +Q H  +VR GF  +    S+LVD Y+K G I+ AR+VFD++  +++++W A+I G   H
Sbjct: 348 RQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMH 407

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G   +AV LFE ML +G+RP +V F+AVL+ACS +GL + GW  F SM RD  I P   H
Sbjct: 408 GHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEH 467

Query: 472 YACMIELLGREGLLDEAFALI---RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
           YA + +LLGR G L+EA+  I   RG   + T ++W+ LL ACR + ++EL +   +KL 
Sbjct: 468 YAAVADLLGRAGRLEEAYDFISNMRGV--QPTGSVWSILLAACRAHKSVELAEKVLDKLL 525

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
            ++ E +  YV++ NIY+++ + K+AA +   +R+KGL+  PACSWIEV  Q H F++GD
Sbjct: 526 SVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGD 585

Query: 589 QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLIN 647
           +SH    +I + +D ++ ++ K GYV +   +L DVDE+ +R +L  HSE+LA+A+G+I+
Sbjct: 586 KSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSERLAIAYGIIS 645

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T+  T ++++++ R+C DCH AIK I  + GREI VRD SRFHHFK+G CSCGDYW
Sbjct: 646 TTAGTTIRVIKNIRVCADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 174/339 (51%), Gaps = 29/339 (8%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I     N  Y EAL++   +   G     S T  +++        + + K +  Y +  G
Sbjct: 198 IAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNG 257

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F+ D+++ + ++ M+ +C  +  + R F  +P ++ +S N IIAG + +G++      F 
Sbjct: 258 FDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFR 317

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            + +E     + +F+++I A A L  +S+G+QLH C +++GF DN F++ +L+DMY+KCG
Sbjct: 318 RMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCG 377

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           +I+ A+ VFD + ++  V W  II G A+HG++ +A+ L+  M + GV+  +  F  ++ 
Sbjct: 378 NIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLT 437

Query: 341 ICTRLASLEHAKQAHAGLVRHG----------FGL--DIVANSALVDFYSKWGRIEDARH 388
            C+           HAGLV  G          FG+   +   +A+ D   + GR+E+A  
Sbjct: 438 ACS-----------HAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYD 486

Query: 389 VFDKM--LCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
               M  +      W+ L+A      R  ++VEL E++L
Sbjct: 487 FISNMRGVQPTGSVWSILLAA----CRAHKSVELAEKVL 521



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 105/238 (44%), Gaps = 18/238 (7%)

Query: 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
            W++II  Y  H     +   +  MR   V  +   F  +++  T L   + A   HA  
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACT 136

Query: 359 VRHGFGLDIVANSALVDFYSKW---GRIED------------ARHVFDKMLCKNVISWNA 403
           VR G   D+   +AL++ Y+K+   G++ D             + VFD M  ++V+SWN 
Sbjct: 137 VRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNT 196

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           +IAG+  +G   EA+++  +M  NG ++P+  T  ++L   +      +G EI     R+
Sbjct: 197 VIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN 256

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
                     + +I++  +   L+ +       P K   + W +++  C  NG  + G
Sbjct: 257 -GFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAIS-WNSIIAGCVQNGEFDRG 312


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/598 (37%), Positives = 354/598 (59%), Gaps = 4/598 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N+ Y E++++F  L  E    + ++T   ++ A   L+ +R   ++ S    TG     Y
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDY 257

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +    + ++ +CG +  A  LF E    ++V+ N +I G   +G+   +  LF +L    
Sbjct: 258 VLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG 317

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
           +   S T  +++  S  L LI     +H  +LK  F  +  VS AL  +YSK   IE A+
Sbjct: 318 AKLKSSTLVSLVPVSGHLMLIYA---IHGYSLKSNFLSHTSVSTALTTVYSKLNEIESAR 374

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +FDE  EK+   WN +I+GY  +G +E+A+ L+ EM++S    +  T + I+  C +L 
Sbjct: 375 KLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLG 434

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           +L   K  H  +    F   I  ++AL+  Y+K G I +AR +FD M  KN ++WN +I+
Sbjct: 435 ALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMIS 494

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GYG HG G+EA+ +F +ML +G+ P  VTFL VL ACS +GL + G EIF SM   +  +
Sbjct: 495 GYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFE 554

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P   HYAC++++LGR G L  A   I   P +   ++W  LL ACR++ +  L +  +EK
Sbjct: 555 PSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEK 614

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           L+ ++P+ +  +V+L NI+++     +AA V +T +++ L   P  + IE+ + PHVF S
Sbjct: 615 LFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTS 674

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVL-SYHSEKLAVAFGL 645
           GDQSH Q K I+ K++++  ++ + GY PE +  L DV+E+E+ ++   HSE+LA+AFGL
Sbjct: 675 GDQSHPQVKAIHEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGL 734

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I T   T ++I+++ R+C DCH A KLI+ +T R IVVRDA+RFHHFKDG+CSCGDYW
Sbjct: 735 IATEPGTEIRIIKNLRVCLDCHTATKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 129/460 (28%), Positives = 225/460 (48%), Gaps = 11/460 (2%)

Query: 106 LNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           +N+    +L +F  L         SSTY   ISA  G R  R    +    +  G + +L
Sbjct: 95  VNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSEL 154

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            + + ++ M+ +   + DAR++FD MPE++ +  N +I+G   +  Y+E+  +F DL  E
Sbjct: 155 LLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINE 214

Query: 226 F-SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
             +   + T   ++ A A L+ + +G Q+HS A K G   + +V    I +YSKCG I+ 
Sbjct: 215 SCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKM 274

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A  +F E      V +N +I GY  +G +E +L L+ E+  SG K+   T   ++ +   
Sbjct: 275 ASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGH 334

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           L  +      H   ++  F      ++AL   YSK   IE AR +FD+   K++ SWNA+
Sbjct: 335 LMLI---YAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAM 391

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG-LSERGWEIFQSMSRDH 463
           I+GY  +G  E+A+ LF +M  +   PN VT   +LSAC++ G LS   W     + R  
Sbjct: 392 ISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKW--VHDLVRST 449

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGK 521
             +        +I +  + G + EA  L    P K  +  W  +++   ++G+ +  L  
Sbjct: 450 DFESSIYVSTALIGMYAKCGSIAEARRLFDFMP-KKNEVTWNTMISGYGLHGHGQEALTI 508

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           F+     G+ P  ++ ++ +L   + +G +KE  E+  ++
Sbjct: 509 FSEMLNSGIAPTPVT-FLCVLYACSHAGLVKEGDEIFNSM 547



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/456 (22%), Positives = 202/456 (44%), Gaps = 37/456 (8%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           SI  + +  + ++  GF  D+ +  ++       G +  AR +F  +   ++   N+++ 
Sbjct: 32  SISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMR 91

Query: 205 GMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
           G   +     +  +F  L +       S T+A  I A++G      G  +H  A+  G  
Sbjct: 92  GFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCD 151

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
             + +   ++ MY K   +EDA+ VFD M EK T+ WNT+I+GY  +    E++ ++ ++
Sbjct: 152 SELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDL 211

Query: 324 -RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG-FGLDIVANSALVDFYSKWG 381
             +S  ++D  T   I+     L  L    Q H+   + G +  D V  +  +  YSK G
Sbjct: 212 INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVL-TGFISLYSKCG 270

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
           +I+ A  +F +    +++++NA+I GY ++G  E ++ LF++++L+G +    T ++++ 
Sbjct: 271 KIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVP 330

Query: 442 AC-------------------SRSGLSERGWEIFQSMSR--------DHKIKPRAMHYAC 474
                                S + +S     ++  ++         D   +     +  
Sbjct: 331 VSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNA 390

Query: 475 MIELLGREGLLDEAFALIR---GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           MI    + GL ++A +L R    + F         +L+AC   G L LGK+  + +   +
Sbjct: 391 MISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTD 450

Query: 532 PEKLSNYV--VLLNIYNSSGKLKEAAEVIRTLRRKG 565
            E  S YV   L+ +Y   G + EA  +   + +K 
Sbjct: 451 FES-SIYVSTALIGMYAKCGSIAEARRLFDFMPKKN 485



 Score = 46.6 bits (109), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 1/102 (0%)

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
           R  S+ H  Q HA +V HGF  DI   + L    S  G I  AR +F  +   +V  +N 
Sbjct: 29  RSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNV 88

Query: 404 LIAGYGNHGRGEEAVELFEQMLLN-GMRPNHVTFLAVLSACS 444
           L+ G+  +     ++ +F  +  +  ++PN  T+   +SA S
Sbjct: 89  LMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAAS 130


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/627 (35%), Positives = 365/627 (58%), Gaps = 42/627 (6%)

Query: 109  RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
            R  +A++L+E +      +   +T  A+++A   +  I++ + +F  +L+    P++   
Sbjct: 442  RLDDAIQLYERVP-----EQTVATKTAMMTAYAQVGRIQKARLIFDEILN----PNVVAW 492

Query: 169  NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
            N ++  + + GM+ +A+ LF +MP +N  S   +IAG + + +  EA  L ++L    S 
Sbjct: 493  NAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSV 552

Query: 229  CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
                +F + + A A +  + +G+ +HS A+K G   N +V   LI MY+KCG++ED   V
Sbjct: 553  PSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHV 612

Query: 289  FDEMSEKTTVGWNTIIAG-------------------------------YALHGYSEEAL 317
            F  +  K TV WN++I+G                               Y   G+ E AL
Sbjct: 613  FRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVAL 672

Query: 318  DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
            DL+ +M   G+K +  T + ++  C  L +++  +Q HA + + GF   +   ++L+  Y
Sbjct: 673  DLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMY 732

Query: 378  SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
             K G  ED   VF++M   ++I+WNA++ G   +G G+EA+++FEQM + G+ P+ ++FL
Sbjct: 733  FKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFL 791

Query: 438  AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
             VL ACS +GL + GW  F SM++ + I P   HY CM++LLGR G L EA ALI   P 
Sbjct: 792  GVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPV 851

Query: 498  KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
            K    +W ALL ACR++ N+ELG+  AE+L+ M   K + YV+L N++ S G   + AE+
Sbjct: 852  KPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEI 911

Query: 558  IRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEE 617
             + ++ +GL   P  SWI+VK + H F++GD++H Q +EIY  +          GY+P+ 
Sbjct: 912  RKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATGYMPDT 971

Query: 618  KTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMV 676
              +L DV +EQ+Q  L YHSEKLAV FG+++T + +P+QI+++ RIC DCH  +K ++ V
Sbjct: 972  NFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNLRICGDCHTFMKFMSKV 1031

Query: 677  TGREIVVRDASRFHHFKDGMCSCGDYW 703
            T R+I++RD +RFHHF+DG CSCGDYW
Sbjct: 1032 TLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 113/459 (24%), Positives = 230/459 (50%), Gaps = 22/459 (4%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R  EA E+FE +      +    +++A+IS  +    ++  +++F  M     E ++   
Sbjct: 248 RIEEAREVFESMT-----ERNVVSWNAMISGYVQNGDLKNARKLFDEMP----EKNVASW 298

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N V+  +  C  M +AR LFD+MPERN VS  ++I+G +   DY EA+ +F+ +    + 
Sbjct: 299 NSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVAR 358

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
                F  ++ A  GL+ + +   L   A+K G+  +V V  A+++ Y++ GS++ A   
Sbjct: 359 PDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHF 418

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F+ M E+    W T+IA +A  G  ++A+ LY  + +  V     T + ++    ++  +
Sbjct: 419 FETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVGRI 474

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
           + A+     ++      ++VA +A++  Y++ G +++A+ +F KM  KN  SW A+IAG+
Sbjct: 475 QKARLIFDEILNP----NVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGF 530

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
             +    EA+EL  ++  +G  P+  +F + LSAC+  G  E G  +  S++     +  
Sbjct: 531 VQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIG-RVIHSLAIKTGCQFN 589

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
           +     +I +  + G +++   + R    K T + W +L++    N  L+  +   EK  
Sbjct: 590 SYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVS-WNSLISGLSENYMLDDARVVFEK-- 646

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
            M    + ++  +++ Y  +G  + A ++   +  +G++
Sbjct: 647 -MPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIK 684



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 127/481 (26%), Positives = 201/481 (41%), Gaps = 81/481 (16%)

Query: 92  KPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKR 151
           K SA   + I   V N+  REALEL   L   G     SS   AL SAC  +  +   + 
Sbjct: 518 KNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSAL-SACANIGDVEIGRV 576

Query: 152 VFSYMLSTGFEPDLYMRNRVLLMHVRCG-------------------------------M 180
           + S  + TG + + Y+ N ++ M+ +CG                               M
Sbjct: 577 IHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYM 636

Query: 181 MIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA 240
           + DAR +F++MP+R++VS   II+  + +G    A  LFLD+          T  +++ A
Sbjct: 637 LDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSA 696

Query: 241 SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW 300
              L  I +G+Q H+   K+GF   +FV  +LI MY KCG  ED   VF+EM E   + W
Sbjct: 697 CGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG-YEDGFCVFEEMPEHDLITW 755

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           N ++ G A +G  +EA+ ++ +M   G+  D  +F  ++  C+           HAGLV 
Sbjct: 756 NAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACS-----------HAGLVD 804

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
            G                 W         +  M    V  +  ++   G  G   EA  L
Sbjct: 805 EG-----------------WAHFNSMTQKYGIMPL--VYHYTCMVDLLGRAGYLSEAEAL 845

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
            E M    ++P+ V + A+L AC      E G  + + + +    KP++  Y  +  L  
Sbjct: 846 IENM---PVKPDSVIWEALLGACRIHRNVELGQRVAERLFQ--MTKPKSATYVLLSNLFA 900

Query: 481 REGLLDEAFALIR------------GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
            +G+ D+  A IR            G  +   KN     +T  R +  +E    A ++ Y
Sbjct: 901 SQGMWDKV-AEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYY 959

Query: 529 G 529
           G
Sbjct: 960 G 960



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 111/456 (24%), Positives = 204/456 (44%), Gaps = 87/456 (19%)

Query: 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
           R G + +ARR+F+EM +R++VS N +I G   +G   EA LLF    + F     RT+  
Sbjct: 183 RLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLF----DAFVGKNIRTWTI 238

Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
           ++   A    I   +++     +     NV    A+I  Y + G +++A+ +FDEM EK 
Sbjct: 239 LLTGYAKEGRIEEAREVFESMTER----NVVSWNAMISGYVQNGDLKNARKLFDEMPEKN 294

Query: 297 TVGWNTIIAGYA--------------------------LHGYSE-----EALDLYYEMRD 325
              WN+++ GY                           + GY       EA D++ +M  
Sbjct: 295 VASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFVKMCR 354

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
           +  + D   F +++   T L  LE         ++ G+  D+V  SA+++ Y++ G ++ 
Sbjct: 355 TVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDL 414

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           A H F+ M  +N  SW  +IA +   GR ++A++L+E++    +     T  A+++A ++
Sbjct: 415 AMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV----ATKTAMMTAYAQ 470

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
            G  ++   IF     D  + P  + +  +I    + G+L EA  L +  P K + + WA
Sbjct: 471 VGRIQKARLIF-----DEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSAS-WA 524

Query: 506 AL-----------------------------------LTACRVNGNLELGKFAAEKLYGM 530
           A+                                   L+AC   G++E+G+     L   
Sbjct: 525 AMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGR-VIHSLAIK 583

Query: 531 EPEKLSNYVV--LLNIYNSSGKLKEAAEVIRTLRRK 564
              + ++YV+  L+++Y   G +++ + V RT+R K
Sbjct: 584 TGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVK 619



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 146/290 (50%), Gaps = 23/290 (7%)

Query: 273 IDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332
           I    + G +E+A+ VF+EM ++  V WN++I GY+ +G  +EA  L+    D+ V  + 
Sbjct: 178 IQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLF----DAFVGKNI 233

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
            T+++++    +   +E A++    +       ++V+ +A++  Y + G +++AR +FD+
Sbjct: 234 RTWTILLTGYAKEGRIEEAREVFESMTER----NVVSWNAMISGYVQNGDLKNARKLFDE 289

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           M  KNV SWN+++ GY +  R  EA ELF+QM       N V+++ ++S           
Sbjct: 290 MPEKNVASWNSVVTGYCHCYRMSEARELFDQM----PERNSVSWMVMISGYVHISDYWEA 345

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN----MWAALL 508
           W++F  M R      +++    +  + G + L  E    +R    KT       + +A+L
Sbjct: 346 WDVFVKMCRTVARPDQSIFVVVLSAITGLDDL--ELIGSLRPIAIKTGYEGDVVVGSAIL 403

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEV 557
            A   NG+L+L     E +    PE+   ++  ++  +   G+L +A ++
Sbjct: 404 NAYTRNGSLDLAMHFFETM----PERNEYSWTTMIAAFAQCGRLDDAIQL 449


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/595 (35%), Positives = 350/595 (58%), Gaps = 2/595 (0%)

Query: 110  YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
            Y  A +LF+ ++ E   +  + T+ +++S C    ++   K++   +  +G + D+ + N
Sbjct: 513  YETAYKLFQEMQNEE-LEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGN 571

Query: 170  RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
             ++ M++RCG + DAR +F  +  R+++S   +I G  D G+ ++A  LF  +  E    
Sbjct: 572  ALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRP 631

Query: 230  GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
               TF+++++       +  GK++ +  L  G+  +  V  ALI  YSK GS+ DA+ VF
Sbjct: 632  VKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVF 691

Query: 290  DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
            D+M  +  V WN IIAGYA +G  + A++  Y+M++  V  + F+F  ++  C+  ++LE
Sbjct: 692  DKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALE 751

Query: 350  HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
              K+ HA +V+     D+   +AL+  Y+K G   +A+ VFD ++ KNV++WNA+I  Y 
Sbjct: 752  EGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYA 811

Query: 410  NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
             HG   +A+  F  M   G++P+  TF ++LSAC+ +GL   G++IF SM  ++ + P  
Sbjct: 812  QHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTI 871

Query: 470  MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
             HY C++ LLGR     EA  LI   PF     +W  LL ACR++GN+ L + AA     
Sbjct: 872  EHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALK 931

Query: 530  MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
            +     + Y++L N+Y ++G+  + A++ R +  +G+R  P  SWIEV    H F++ D+
Sbjct: 932  LNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADR 991

Query: 590  SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINT 648
            SH +T EIY ++ R+ +E+ + GY P+ + +L D+ +  Q   L  HSE+LA+A+GLI T
Sbjct: 992  SHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKT 1051

Query: 649  SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
               TP++I ++ RIC DCH A K I+ + GREI+ RD++RFH FK+G CSC DYW
Sbjct: 1052 PPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 138/457 (30%), Positives = 249/457 (54%), Gaps = 16/457 (3%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA+ L++ ++ EG    G  T+  L+SAC    +  + K +   +L +G + + ++ N +
Sbjct: 414 EAMRLYKQMQSEG-VKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANAL 472

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ RCG +++A+ +F+    R+++S N +IAG    G Y  A+ LF ++  E  +  +
Sbjct: 473 MNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            TFA+++      E + +GKQ+H    + G   +V +  ALI+MY +CGS++DA+ VF  
Sbjct: 533 ITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHS 592

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           +  +  + W  +I G A  G   +A++L+++M++ G +    TFS I+++CT  A L+  
Sbjct: 593 LQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEG 652

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K+  A ++  G+ LD    +AL+  YSK G + DAR VFDKM  ++++SWN +IAGY  +
Sbjct: 653 KKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQN 712

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G G+ AVE   QM    + PN  +F+++L+ACS     E G  +   + +  K++     
Sbjct: 713 GLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVK-RKLQGDVRV 771

Query: 472 YACMIELL---GREGLLDEAFALIRGAPFKTTKNM--WAALLTACRVNG--NLELGKFAA 524
            A +I +    G +G   E F  I        KN+  W A++ A   +G  +  LG F  
Sbjct: 772 GAALISMYAKCGSQGEAQEVFDNI------IEKNVVTWNAMINAYAQHGLASKALGFFNC 825

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            +  G++P+  S +  +L+  N +G + E  ++  ++
Sbjct: 826 MEKEGIKPDG-STFTSILSACNHAGLVLEGYQIFSSM 861



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 137/448 (30%), Positives = 231/448 (51%), Gaps = 11/448 (2%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G  +  +TY ++++AC   +++   K + S++   G   D+ + N ++ M+ RCG +  A
Sbjct: 325 GVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKA 384

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R LF  MP+R+L+S N IIAG     D  EA  L+  +  E    G  TF  ++ A A  
Sbjct: 385 RELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANS 444

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
              + GK +H   L+ G   N  ++ AL++MY +CGS+ +AQ VF+    +  + WN++I
Sbjct: 445 SAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMI 504

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           AG+A HG  E A  L+ EM++  ++ D+ TF+ ++  C    +LE  KQ H  +   G  
Sbjct: 505 AGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQ 564

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
           LD+   +AL++ Y + G ++DAR+VF  +  ++V+SW A+I G  + G   +A+ELF QM
Sbjct: 565 LDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQM 624

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
              G RP   TF ++L  C+ S   + G ++   +          +  A +I    + G 
Sbjct: 625 QNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNA-LISAYSKSGS 683

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME-----PEKLSNYV 539
           + +A  +    P +   + W  ++     NG   LG+ A E  Y M+     P K S +V
Sbjct: 684 MTDAREVFDKMPSRDIVS-WNKIIAGYAQNG---LGQTAVEFAYQMQEQDVVPNKFS-FV 738

Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
            LLN  +S   L+E   V   + ++ L+
Sbjct: 739 SLLNACSSFSALEEGKRVHAEIVKRKLQ 766



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 133/491 (27%), Positives = 238/491 (48%), Gaps = 41/491 (8%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           ++A +LFE ++   GF     TY ++++AC     +   K++ S ++  G++ D  ++N 
Sbjct: 110 KKAFQLFEEMQ-NAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNS 168

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           +L M+ +CG +  AR++F  +  R++VS N ++          E   LF  +  E     
Sbjct: 169 LLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPD 228

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             T+  ++ A     ++  GK++H   ++ G   ++ V  AL+ M  +CG ++ A+  F 
Sbjct: 229 KVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFK 288

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
             +++  V +N +IA  A HG++ EA + YY MR  GV ++  T+  I+  C+   +LE 
Sbjct: 289 GTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEA 348

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            K  H+ +   G   D+   +AL+  Y++ G +  AR +F  M  +++ISWNA+IAGY  
Sbjct: 349 GKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYAR 408

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
                EA+ L++QM   G++P  VTFL +LSAC+ S     G  I + + R   IK    
Sbjct: 409 REDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGH 467

Query: 471 HYACMIELLGREGLLDEAFALIRGAP--------------------------FKTTKN-- 502
               ++ +  R G L EA  +  G                            F+  +N  
Sbjct: 468 LANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEE 527

Query: 503 ------MWAALLTACRVNGNLELGKFAAEKLY--GMEPE-KLSNYVVLLNIYNSSGKLKE 553
                  +A++L+ C+    LELGK    ++   G++ +  L N   L+N+Y   G L++
Sbjct: 528 LEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGN--ALINMYIRCGSLQD 585

Query: 554 AAEVIRTLRRK 564
           A  V  +L+ +
Sbjct: 586 ARNVFHSLQHR 596



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 126/443 (28%), Positives = 221/443 (49%), Gaps = 13/443 (2%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           +TY AL+  C   R + E KR+ + M+     PD+++ N ++ M+V+C  ++DA ++F E
Sbjct: 28  ATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG----SRTFATMIRASAGLEL 246
           MP R+++S N +I+     G   +AF LF    EE  + G      T+ +++ A      
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLF----EEMQNAGFIPNKITYISILTACYSPAE 143

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           +  GK++HS  +K G+  +  V  +L+ MY KCG +  A+ VF  +S +  V +NT++  
Sbjct: 144 LENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGL 203

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           YA   Y +E L L+ +M   G+  D  T+  ++   T  + L+  K+ H   V  G   D
Sbjct: 204 YAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSD 263

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           I   +ALV    + G ++ A+  F     ++V+ +NALIA    HG   EA E + +M  
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRS 323

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
           +G+  N  T+L++L+ACS S   E G  I   +S D       +  A +I +  R G L 
Sbjct: 324 DGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNA-LISMYARCGDLP 382

Query: 487 EAFALIRGAPFKTTKNMWAALLT--ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           +A  L    P K     W A++   A R +    +  +   +  G++P +++ ++ LL+ 
Sbjct: 383 KARELFYTMP-KRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVT-FLHLLSA 440

Query: 545 YNSSGKLKEAAEVIRTLRRKGLR 567
             +S    +   +   + R G++
Sbjct: 441 CANSSAYADGKMIHEDILRSGIK 463


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/607 (35%), Positives = 348/607 (57%), Gaps = 3/607 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I     N R++EAL  F  +  EG          +++ AC  L +I+   +V   ++ 
Sbjct: 146 SIITGFAHNSRFQEALSSFCQMRIEGEI-ATQFALSSVLQACTSLGAIQFGTQVHCLVVK 204

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF  +L++ + +  M+ +CG + DA + F+EMP ++ V    +I G + +GD+ +A   
Sbjct: 205 CGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTA 264

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           ++ +  +          + + A + L+  S GK LH+  LK+GF    F+  AL DMYSK
Sbjct: 265 YMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNALTDMYSK 324

Query: 279 CGSIEDAQGVFDEMSE-KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
            G +  A  VF   S+  + V    II GY      E+AL  + ++R  G++ + FTF+ 
Sbjct: 325 SGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTS 384

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           +I+ C   A LEH  Q H  +V+  F  D   +S LVD Y K G  + +  +FD++   +
Sbjct: 385 LIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPD 444

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
            I+WN L+  +  HG G  A+E F  M+  G++PN VTF+ +L  CS +G+ E G   F 
Sbjct: 445 EIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFS 504

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
           SM + + + P+  HY+C+I+LLGR G L EA   I   PF+     W + L AC+++G++
Sbjct: 505 SMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDM 564

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
           E  KFAA+KL  +EPE    +V+L NIY    + ++   + + ++   +  LP  SW+++
Sbjct: 565 ERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDI 624

Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHS 636
           + + HVF   D SH Q KEIY K+D ++ +I + GYVP+ +++L D+D+  ++++L YHS
Sbjct: 625 RNKTHVFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYVPQTESVLIDMDDNLKEKLLHYHS 684

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           E++AVAF L+      P+ + ++ R+C DCH+A+K I+ VT R I+VRD SRFHHF +G 
Sbjct: 685 ERIAVAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISKVTERNIIVRDISRFHHFSNGS 744

Query: 697 CSCGDYW 703
           CSCGDYW
Sbjct: 745 CSCGDYW 751



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 126/222 (56%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           ++T A +I+  A  + ++ GKQLH+  ++ G   N F+S   +++YSKCG ++    +FD
Sbjct: 75  TKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFD 134

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           +MS++  V W +II G+A +   +EAL  + +MR  G     F  S +++ CT L +++ 
Sbjct: 135 KMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQF 194

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
             Q H  +V+ GFG ++   S L D YSK G + DA   F++M CK+ + W ++I G+  
Sbjct: 195 GTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVK 254

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           +G  ++A+  + +M+ + +  +     + LSACS    S  G
Sbjct: 255 NGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFG 296



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 1/131 (0%)

Query: 326 SGVKM-DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           SG K+ D  T + +I+   R   L   KQ HA L+R G   +   ++  ++ YSK G ++
Sbjct: 68  SGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELD 127

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
               +FDKM  +N++SW ++I G+ ++ R +EA+  F QM + G         +VL AC+
Sbjct: 128 YTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACT 187

Query: 445 RSGLSERGWEI 455
             G  + G ++
Sbjct: 188 SLGAIQFGTQV 198


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/621 (35%), Positives = 366/621 (58%), Gaps = 18/621 (2%)

Query: 84  SLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGL 143
           S+ D   +K      + +   V N +  EA  LF+  E     +    +++ L+   +  
Sbjct: 178 SVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRE-----NWALVSWNCLLGGFVKK 232

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           + I E ++ F  M       D+   N ++  + + G + +AR+LFDE P +++ +   ++
Sbjct: 233 KKIVEARQFFDSMNVR----DVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMV 288

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
           +G I +    EA  LF    ++  +    ++  M+      E + + K+L          
Sbjct: 289 SGYIQNRMVEEARELF----DKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMP----C 340

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
            NV     +I  Y++CG I +A+ +FD+M ++  V W  +IAGY+  G+S EAL L+ +M
Sbjct: 341 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM 400

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
              G +++  +FS  +  C  + +LE  KQ H  LV+ G+       +AL+  Y K G I
Sbjct: 401 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSI 460

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           E+A  +F +M  K+++SWN +IAGY  HG GE A+  FE M   G++P+  T +AVLSAC
Sbjct: 461 EEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSAC 520

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S +GL ++G + F +M++D+ + P + HYACM++LLGR GLL++A  L++  PF+    +
Sbjct: 521 SHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAI 580

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           W  LL A RV+GN EL + AA+K++ MEPE    YV+L N+Y SSG+  +  ++   +R 
Sbjct: 581 WGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRD 640

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
           KG++ +P  SWIE++ + H F  GD+ H +  EI+  ++ + L + K GYV +   +L D
Sbjct: 641 KGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHD 700

Query: 624 VDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           V+E+E +R++ YHSE+LAVA+G++  S   P++++++ R+C DCHNAIK +A +TGR I+
Sbjct: 701 VEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLII 760

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           +RD +RFHHFKDG CSCGDYW
Sbjct: 761 LRDNNRFHHFKDGSCSCGDYW 781



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 165/361 (45%), Gaps = 63/361 (17%)

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N ++  ++R G    AR+LFDEMPER+LVS N++I G + + +  +A  LF ++  E   
Sbjct: 99  NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELF-EIMPERDV 157

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
           C   T                                      ++  Y++ G ++DA+ V
Sbjct: 158 CSWNT--------------------------------------MLSGYAQNGCVDDARSV 179

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD M EK  V WN +++ Y  +   EEA  L+    +  +     +++ ++    +   +
Sbjct: 180 FDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWAL----VSWNCLLGGFVKKKKI 235

Query: 349 EHAKQAHAGL-VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
             A+Q    + VR     D+V+ + ++  Y++ G+I++AR +FD+   ++V +W A+++G
Sbjct: 236 VEARQFFDSMNVR-----DVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSG 290

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           Y  +   EEA ELF++M       N V++ A+L+   +    E   E+F  M   +    
Sbjct: 291 YIQNRMVEEARELFDKMP----ERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRN---- 342

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
               +  MI    + G + EA  L    P K     WAA++     +G+     F A +L
Sbjct: 343 -VSTWNTMITGYAQCGKISEAKNLFDKMP-KRDPVSWAAMIAGYSQSGH----SFEALRL 396

Query: 528 Y 528
           +
Sbjct: 397 F 397



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 142/309 (45%), Gaps = 35/309 (11%)

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCAL-IDMYSKCGSIEDAQGV 288
           G+  F ++ RA+      S  K L  C      GD+      + I  Y + G   +A  V
Sbjct: 33  GAANFHSLKRATQTQIQKSQTKPLLKC------GDSDIKEWNVAISSYMRTGRCNEALRV 86

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F  M   ++V +N +I+GY  +G  E A  L+ EM +     D  +++++I+   R  +L
Sbjct: 87  FKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPER----DLVSWNVMIKGYVRNRNL 142

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
             A++    +       D+ + + ++  Y++ G ++DAR VFD+M  KN +SWNAL++ Y
Sbjct: 143 GKARELFEIMPER----DVCSWNTMLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAY 198

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERGWEIFQSMS-RDHKI 465
             + + EEA  LF+       R N   V++  +L    +        + F SM+ RD   
Sbjct: 199 VQNSKMEEACMLFKS------RENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRD--- 249

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
               + +  +I    + G +DEA  L   +P +     W A+++    N  +E     A 
Sbjct: 250 ---VVSWNTIITGYAQSGKIDEARQLFDESPVQDVFT-WTAMVSGYIQNRMVE----EAR 301

Query: 526 KLYGMEPEK 534
           +L+   PE+
Sbjct: 302 ELFDKMPER 310


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/573 (38%), Positives = 341/573 (59%), Gaps = 1/573 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T   L+  C   RS+   K      +  G   D    N ++ ++ +CG    ARR+FD M
Sbjct: 58  TLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAM 117

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
             R+++S N +IAG   + + +EA  LF  +  E +     T ++ + A A    I   K
Sbjct: 118 SVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECK 177

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           QLH+ A+K+    + FV  A +D+Y+KC  I+DA  VF+ M EKT+V W+++ AG+  +G
Sbjct: 178 QLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNG 237

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             EE L L+   +  G+++  FT S I+  C  LA +    Q HA +V+HGF  ++   +
Sbjct: 238 LHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVAT 297

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           +LVD Y+K G+IE +  VF  M  KNV+ WNA+IA +  H    EA+ LFE+M   G+ P
Sbjct: 298 SLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFP 357

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           N VT+L++LSACS +GL E G   F  +  D   +P  +HY+CM+++LGR G  DEA+ L
Sbjct: 358 NEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKL 417

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           +   PF+ T +MW +LL + R++ N+ L + AAE+L+ +EPE   N+V+L N+Y +SG  
Sbjct: 418 LDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAASGNW 477

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
           +      + LR  G +     SWIE K + HVF++G++ H    ++Y K++ +  E+ K 
Sbjct: 478 ENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHEMRKI 537

Query: 612 GYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
            +    +  L DV  +Q++ +L +HSEKLA AFGLI+     P+ I ++ RIC DCH+ +
Sbjct: 538 SHRANTQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPPNIPITIYKNLRICGDCHSFM 597

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           K+++ +T R+++VRD +RFHHFKDG CSCGD+W
Sbjct: 598 KIVSCITERQVIVRDINRFHHFKDGSCSCGDFW 630



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 172/353 (48%), Gaps = 31/353 (8%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N+   EAL+LF  +  EG   +   T  + + AC    +I E K++ +  +    +   +
Sbjct: 135 NREDVEALKLFSRMHREGT-QMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSF 193

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +    L ++ +C M+ DA  +F+ MPE+  V+ + + AG + +G + E   LF     E 
Sbjct: 194 VGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREG 253

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 T ++++   A L LI  G Q+H+  +K GF  N+FV+ +L+D+Y+KCG IE + 
Sbjct: 254 MQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSY 313

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VF +M EK  V WN +IA ++ H +S EA+ L+ +M+  G+  +  T+  I+  C+   
Sbjct: 314 EVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACS--- 370

Query: 347 SLEHAKQAHAGLV---RHGFGL---------DIVANSALVDFYSKWGRIEDARHVFDKML 394
                   H GLV   RH F L         +++  S +VD   + G+ ++A  + DKM 
Sbjct: 371 --------HTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMP 422

Query: 395 CKNVIS-WNALIAGYGNHGRGE----EAVELFEQMLLNGMRPNHVTFLAVLSA 442
            +   S W +L+     H         A +LF     NG   NHV    V +A
Sbjct: 423 FEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENG--GNHVLLSNVYAA 473



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 64/115 (55%)

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
           +D FT   ++++C +  SL   K  H   +  G   D V  + L++ Y+K G+ + AR V
Sbjct: 54  IDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRV 113

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           FD M  +++ISWN +IAGY ++    EA++LF +M   G +    T  + L AC+
Sbjct: 114 FDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACA 168


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/569 (36%), Positives = 345/569 (60%), Gaps = 1/569 (0%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           ++  C+    ++ +K +  Y    G + +  + N  +  + RCG +  + R+FD M  + 
Sbjct: 313 VLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKT 372

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
           + S N ++ G   + D  +A  L+L + +   D    T  +++ A + ++ +  G+++H 
Sbjct: 373 VSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHG 432

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
            AL+ G   + F+  +L+ +Y  CG    AQ +FD M  ++ V WN +IAGY+ +G  +E
Sbjct: 433 FALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDE 492

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           A++L+ +M   G++        +   C++L++L   K+ H   ++     DI  +S+++D
Sbjct: 493 AINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIID 552

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            Y+K G I  ++ +FD++  K+V SWN +IAGYG HGRG+EA+ELFE+ML  G++P+  T
Sbjct: 553 MYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFT 612

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
           F  +L ACS +GL E G E F  M   H I+P+  HY C++++LGR G +D+A  LI   
Sbjct: 613 FTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEM 672

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           P      +W++LL++CR++GNL LG+  A KL  +EPEK  NYV++ N++  SGK  +  
Sbjct: 673 PGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVR 732

Query: 556 EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
            V   ++  GL+    CSWIEV  + H FL GD+   + +E+     R+ ++IS  GY P
Sbjct: 733 RVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTP 792

Query: 616 EEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
           +  ++L D++E+++  +L  HSEKLA++FGL+NT+   P+++ ++ RIC DCHNA K I+
Sbjct: 793 DTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFIS 852

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            V  R+IVVRD  RFHHF+DG+CSCGDYW
Sbjct: 853 KVVNRDIVVRDNKRFHHFRDGICSCGDYW 881



 Score =  182 bits (463), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 135/470 (28%), Positives = 225/470 (47%), Gaps = 50/470 (10%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N+ + +A+ +F  L         + T   +I AC GL  +   + +           D++
Sbjct: 78  NELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVF 137

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW--E 224
           + N ++ M+ +CG++ +A ++F+ MPERNLVS N II G  ++G   E+F  F ++   E
Sbjct: 138 VGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGE 197

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
           E       T  T++   AG E I  G  +H  A+K+G  + + V+ +LIDMYSKC  + +
Sbjct: 198 ESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSE 257

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY-----EMRDSGVKMDHFTFSMII 339
           AQ +FD+  +K  V WN++I GYA     E+    +Y     +  D+ +K D FT   ++
Sbjct: 258 AQLLFDKNDKKNIVSWNSMIGGYA---REEDVCRTFYLLQKMQTEDAKMKADEFTILNVL 314

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
            +C   + L+  K+ H    RHG   + +  +A +  Y++ G +  +  VFD M  K V 
Sbjct: 315 PVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVS 374

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           SWNAL+ GY  +    +A++L+ QM  +G+ P+  T  ++L ACSR              
Sbjct: 375 SWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRM------------- 421

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
                   +++HY   I            FAL  G        +    L  C        
Sbjct: 422 --------KSLHYGEEI----------HGFALRNGLAVDPFIGISLLSLYIC-------C 456

Query: 520 GK-FAAEKLY-GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           GK FAA+ L+ GME   L ++ V++  Y+ +G   EA  + R +   G++
Sbjct: 457 GKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQ 506



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 164/318 (51%), Gaps = 12/318 (3%)

Query: 135 ALISACIGLRSIREVKRVFSYMLS--TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
            L+ AC G R   EV R    M+S  T F  D  +  R++ M+  CG   D+R +FD++ 
Sbjct: 3   VLLQAC-GQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLR 61

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDL---WEEFSDCGSRTFATMIRASAGLELISV 249
            +NL   N I++    +  + +A  +F +L    E   D  + T   +I+A AGL  + +
Sbjct: 62  RKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPD--NFTLPCVIKACAGLLDLGL 119

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G+ +H  A KM    +VFV  ALI MY KCG +E+A  VF+ M E+  V WN+II G++ 
Sbjct: 120 GQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSE 179

Query: 310 HGYSEEALDLYYEM--RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           +G+ +E+ + + EM   +     D  T   ++ +C     +E     H   V+ G   ++
Sbjct: 180 NGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEEL 239

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
           + N++L+D YSK   + +A+ +FDK   KN++SWN++I GY           L ++M   
Sbjct: 240 MVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTE 299

Query: 428 G--MRPNHVTFLAVLSAC 443
              M+ +  T L VL  C
Sbjct: 300 DAKMKADEFTILNVLPVC 317



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/344 (31%), Positives = 180/344 (52%), Gaps = 10/344 (2%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N   R+AL+L+  +  + G D    T  +L+ AC  ++S+   + +  + L  G   D +
Sbjct: 386 NSDPRKALDLYLQMT-DSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPF 444

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   +L +++ CG    A+ LFD M  R+LVS N++IAG   +G   EA  LF  +  + 
Sbjct: 445 IGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDG 504

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                     +  A + L  + +GK+LH  ALK    +++FVS ++IDMY+K G I  +Q
Sbjct: 505 IQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQ 564

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +FD + EK    WN IIAGY +HG  +EAL+L+ +M   G+K D FTF+ I+  C+   
Sbjct: 565 RIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAG 624

Query: 347 SLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNAL 404
            +E   +    ++  H     +   + +VD   + GRI+DA  + ++M    +   W++L
Sbjct: 625 LVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSL 684

Query: 405 IAG---YGNHGRGEE-AVELFEQMLLNGMRPNHVTFLAVLSACS 444
           ++    +GN G GE+ A +L E   L   +P +   ++ L A S
Sbjct: 685 LSSCRIHGNLGLGEKVANKLLE---LEPEKPENYVLISNLFAGS 725



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 116/225 (51%), Gaps = 4/225 (1%)

Query: 235 ATMIRASAGLELISVGKQLHS-CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
             +++A    + I VG++LH   +    F ++  ++  +I MYS CGS  D++ VFD++ 
Sbjct: 2   GVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLR 61

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSMIIRICTRLASLEHAK 352
            K    WN I++ Y  +   E+A+ ++ E+   +  K D+FT   +I+ C  L  L   +
Sbjct: 62  RKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQ 121

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
             H    +     D+   +AL+  Y K G +E+A  VF+ M  +N++SWN++I G+  +G
Sbjct: 122 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENG 181

Query: 413 RGEEAVELFEQMLLN--GMRPNHVTFLAVLSACSRSGLSERGWEI 455
             +E+   F +ML+      P+  T + VL  C+     E+G  +
Sbjct: 182 FLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAV 226



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 93/185 (50%), Gaps = 6/185 (3%)

Query: 337 MIIRICTRLASLEHAKQAHAGL-VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
           ++++ C +   +E  ++ H  +     F  D V N+ ++  YS  G   D+R VFDK+  
Sbjct: 3   VLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRR 62

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLSACSRSGLSERGW- 453
           KN+  WNA+++ Y  +   E+A+ +F +++ +   +P++ T   V+ AC  +GL + G  
Sbjct: 63  KNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLG 120

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           +I   M+    +         +I + G+ GL++EA  +    P +   + W +++     
Sbjct: 121 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVS-WNSIICGFSE 179

Query: 514 NGNLE 518
           NG L+
Sbjct: 180 NGFLQ 184


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/635 (36%), Positives = 357/635 (56%), Gaps = 43/635 (6%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +  L  + R REAL +  +     G  + S+TY + ++AC  L S+   K++ + ++ + 
Sbjct: 266 VSALSQSGRAREALSV-AVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSL 324

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              D Y+ + ++ ++ +CG   +ARR+F  + +RN VS  ++I G +  G + E+  LF 
Sbjct: 325 PCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFN 384

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +  E         AT+I   +    + + +QLHS +LK G    V +S +LI MY+KCG
Sbjct: 385 QMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCG 444

Query: 281 SIEDAQGVF-------------------------------DEMSEKTTVGWNTIIAGYAL 309
           ++++A+ +F                               D MS +  + WN ++  Y  
Sbjct: 445 NLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQ 504

Query: 310 HGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
           HG  E+ L +Y  M  +  V  D  T+  + R C  + + +   Q     V+ G  LD  
Sbjct: 505 HGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTS 564

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             +A++  YSK GRI +AR +FD +  K+++SWNA+I GY  HG G++A+E+F+ ML  G
Sbjct: 565 VMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKG 624

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
            +P++++++AVLS+CS SGL + G   F  + RDH + P   H++CM++LL R G L EA
Sbjct: 625 AKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEA 684

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
             LI   P K T  +W ALL+AC+ +GN EL + AA+ L+ ++      Y++L  IY  +
Sbjct: 685 KNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADA 744

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           GK  ++A+V + +R KG++  P  SW+EVK + HVF + D SH Q   I  K+D +M +I
Sbjct: 745 GKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAEDVSHPQVIAIREKLDELMEKI 804

Query: 609 SKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHN 668
           ++ GYV  E            R   +HSEKLAVAFG++N   W P+ I+++ RIC DCH 
Sbjct: 805 AQLGYVRTESL----------RSEIHHSEKLAVAFGIMNLPAWMPIHIMKNLRICGDCHT 854

Query: 669 AIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            IKLI+ VTGRE V+RDA RFHHFK G CSCGDYW
Sbjct: 855 VIKLISTVTGREFVIRDAVRFHHFKGGSCSCGDYW 889



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 128/525 (24%), Positives = 243/525 (46%), Gaps = 78/525 (14%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R+ +A+E F  +   G     + T+   + +C  L       ++   +   GF+ D  + 
Sbjct: 141 RFLDAMESFVSMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVA 200

Query: 169 NRVLLMHVRCGMM------------------------------ID-ARRLFDEMPERNLV 197
             ++ M VRCG +                              +D A  LF+ MPER++V
Sbjct: 201 TGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVV 260

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257
           S NM+++ +  SG   EA  + +D+        S T+ + + A A L  +  GKQLH+  
Sbjct: 261 SWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQV 320

Query: 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL 317
           ++     + +V+ A++++Y+KCG  ++A+ VF  + ++ TV W  +I G+  +G   E+L
Sbjct: 321 IRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESL 380

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
           +L+ +MR   + +D F  + II  C+    +  A+Q H+  ++ G    +V +++L+  Y
Sbjct: 381 ELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMY 440

Query: 378 SKWGRIED-------------------------------ARHVFDKMLCKNVISWNALIA 406
           +K G +++                               AR  FD M  +NVI+WNA++ 
Sbjct: 441 AKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLG 500

Query: 407 GYGNHGRGEEAVELFEQMLL-NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
            Y  HG  E+ ++++  ML    + P+ VT++ +   C+  G ++ G +I     +   I
Sbjct: 501 AYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLI 560

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM--WAALLTACRVNGNLELGKFA 523
              ++  A +I +  + G + EA  +     F + K++  W A++T    +G   +GK A
Sbjct: 561 LDTSVMNA-VITMYSKCGRISEARKIF---DFLSRKDLVSWNAMITGYSQHG---MGKQA 613

Query: 524 AEKL-----YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
            E        G +P+ +S YV +L+  + SG ++E       L+R
Sbjct: 614 IEIFDDMLKKGAKPDYIS-YVAVLSSCSHSGLVQEGKFYFDMLKR 657



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 110/427 (25%), Positives = 192/427 (44%), Gaps = 51/427 (11%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           EP++   N ++  + + G + DA  LF  MP R++ S N +++G   SG +L+A   F+ 
Sbjct: 92  EPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVS 151

Query: 222 LWEEFSDC-GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           +         + TF   +++   L    V  QL     K GF  +  V+  ++DM+ +CG
Sbjct: 152 MRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCG 211

Query: 281 SIEDAQ-------------------------GV------FDEMSEKTTVGWNTIIAGYAL 309
           +++ A                          GV      F+ M E+  V WN +++  + 
Sbjct: 212 AVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQ 271

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G + EAL +  +M + GV++D  T++  +  C +L+SL   KQ HA ++R    +D   
Sbjct: 272 SGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYV 331

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            SA+V+ Y+K G  ++AR VF  +  +N +SW  LI G+  +G   E++ELF QM    M
Sbjct: 332 ASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELM 391

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD-HKIKPRAMHYAC------MIELLGRE 482
             +      ++S CS          +   ++R  H +  ++ H         +I +  + 
Sbjct: 392 TVDQFALATIISGCSN--------RMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKC 443

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
           G L  A ++      +   + W  +LTA    GN  +GK A E   GM    +  +  +L
Sbjct: 444 GNLQNAESIFSSMEERDIVS-WTGMLTAYSQVGN--IGK-AREFFDGMSTRNVITWNAML 499

Query: 543 NIYNSSG 549
             Y   G
Sbjct: 500 GAYIQHG 506



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 134/340 (39%), Gaps = 83/340 (24%)

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG-------------------------- 287
           H   + +G    VF+   L+  Y  CG++ DA+G                          
Sbjct: 51  HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDITEPNVITHNIMMNGYAKLGS 110

Query: 288 ------VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM-DHFTFSMIIR 340
                 +F  M  +    WNT+++GY   G   +A++ +  MR SG  + + FTF   ++
Sbjct: 111 LSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAMK 170

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-----LC 395
            C  L   E A Q    L + GF  D    + +VD + + G ++ A   F ++      C
Sbjct: 171 SCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFC 230

Query: 396 KN--------------------------VISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
           +N                          V+SWN +++     GR  EA+ +   M   G+
Sbjct: 231 RNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGV 290

Query: 430 RPNHVTFLAVLSACSRSGLSERGW------EIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           R +  T+ + L+AC++  LS  GW      ++ +S+     I P     + M+EL  + G
Sbjct: 291 RLDSTTYTSSLTACAK--LSSLGWGKQLHAQVIRSLP---CIDPYVA--SAMVELYAKCG 343

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
              EA  +      + T + W  L     + G L+ G F+
Sbjct: 344 CFKEARRVFSSLRDRNTVS-WTVL-----IGGFLQYGCFS 377



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 99/208 (47%), Gaps = 14/208 (6%)

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           +++ ++ +++ Y+K G + DA  +F +M  ++V SWN L++GY   GR  +A+E F  M 
Sbjct: 94  NVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMR 153

Query: 426 LNG-MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR-DHKIKPRAMHYACMIELLGREG 483
            +G   PN  TF   + +C   G  E   ++   +++   +  P       ++++  R G
Sbjct: 154 RSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVA--TGIVDMFVRCG 211

Query: 484 LLDEA---FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540
            +D A   F+ I         +M A    +  V+  LEL          M    + ++ +
Sbjct: 212 AVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALEL-------FESMPERDVVSWNM 264

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
           +++  + SG+ +EA  V   +  +G+R+
Sbjct: 265 MVSALSQSGRAREALSVAVDMHNRGVRL 292


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/583 (38%), Positives = 343/583 (58%), Gaps = 10/583 (1%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G    + T+  +I AC  LR      R+   ++  G++  +++ N ++ M+ +C     +
Sbjct: 5   GIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELS 64

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAG 243
           R++FDEMP++N VS + II   +      E F LF  +  E    GSR +   ++ A A 
Sbjct: 65  RQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSE----GSRPSRGAILNAMAC 120

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           +        ++   ++ G   +  V  A   M+++CG +E A+ +FD +  K  V W T 
Sbjct: 121 VRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATT 180

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I  Y       EAL L  +M   G+  D  T   +IR C+ LAS + A   H G++  GF
Sbjct: 181 IEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVH-GIITTGF 239

Query: 364 GLD--IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
             +  +   +AL+D Y K G +  AR VFD M  +N+I+W+A+I+GYG HG G EA+ LF
Sbjct: 240 FYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLF 299

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
           +QM  + ++P+H+TF+++LSACS SGL   GWE F SM+RD  + PR  HYACM+++LGR
Sbjct: 300 DQMKAS-VKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGR 358

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
            G LDEA   I   P +    +W ALL ACR++ N++L +  A  L+ ++P     YV+L
Sbjct: 359 AGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVIL 418

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV 601
            NIY  +GK KEA  +   ++ +G++ +   S IE+K + + F++GD+SH QT  IY ++
Sbjct: 419 YNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSEL 478

Query: 602 DRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSH 660
           +R+M  I + GY P+   +L DVDE+ +  + Y HSEKLA+ FGL+N    + ++I ++ 
Sbjct: 479 ERLMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNL 538

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           R+C DCH A K I+ VTGREIVVRDA RFHHFK+G CSC DYW
Sbjct: 539 RVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/527 (40%), Positives = 330/527 (62%), Gaps = 1/527 (0%)

Query: 178 CGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATM 237
           C  M  A ++F ++   N+ + N +I G  +S + + A  L+  +     +  + T+  +
Sbjct: 87  CSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFL 146

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           ++A A L  +  G+++HS A++ GF   VFV   L+ MY+ CG  E A  +F+ M+E+  
Sbjct: 147 LKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNL 206

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           V WN++I GYAL+G   EAL L+ EM   GV+ D FT   ++  C  L +L   ++AH  
Sbjct: 207 VTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVY 266

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           +V+ G   ++ A +AL+D Y+K G I  A  VFD+M  K+V+SW +LI G   +G G+EA
Sbjct: 267 MVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEA 326

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           +ELF+++   G+ P+ +TF+ VL ACS  G+ + G++ F+ M  ++ I P+  HY CM++
Sbjct: 327 LELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVD 386

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
           LLGR GL+ +A   I+  P +    +W  LL AC ++G+L LG+ A  +L  +EP+   +
Sbjct: 387 LLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGD 446

Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI 597
           YV+L N+Y S  +  +  +V RT+ R+G++  P  S +E++ + H F+ GD+SH QT+EI
Sbjct: 447 YVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEI 506

Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQI 656
           Y K+  +   +   GYVP    +L D++E+E+   LSYHSEK+A+AF LINT+   P+++
Sbjct: 507 YVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRV 566

Query: 657 VQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           V++ R+C DCH AIKLI+ V  REIVVRD SRFHHFKDG CSC DYW
Sbjct: 567 VKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 169/335 (50%), Gaps = 34/335 (10%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           ALEL+  +      +  + TY  L+ A   L  +RE ++V S  +  GFE  ++++N ++
Sbjct: 124 ALELYRQMHV-SCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLV 182

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            M+  CG    A +LF+ M ERNLV+ N +I G   +G   EA  LF ++     +    
Sbjct: 183 HMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGF 242

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T  +++ A A L  +++G++ H   +K+G   N+    AL+D+Y+KCGSI  A  VFDEM
Sbjct: 243 TMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEM 302

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            EK+ V W ++I G A++G+ +EAL+L+ E+   G+     TF  ++  C+         
Sbjct: 303 EEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACS--------- 353

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
             H G+V  GF           D++    R+++   +  K     +  +  ++   G  G
Sbjct: 354 --HCGMVDEGF-----------DYFK---RMKEEYGIVPK-----IEHYGCMVDLLGRAG 392

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
             ++A E  + M    M+PN V +  +L AC+  G
Sbjct: 393 LVKQAHEFIQNM---PMQPNAVVWRTLLGACTIHG 424


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/500 (41%), Positives = 318/500 (63%), Gaps = 1/500 (0%)

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
           G I   D  +A  LF  + +        T AT  +A   L L+  GKQ+H+ A+K GF  
Sbjct: 4   GYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDS 63

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           ++ V+  ++DMY KCG + +A  VF+ +S    V W ++I+G   +G  ++AL +Y+ MR
Sbjct: 64  DLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMR 123

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
            S V  D +TF+ +I+  + + +LE  +Q HA +++     D    ++LVD Y+K G IE
Sbjct: 124 QSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIE 183

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           DA  +F KM  +N+  WNA++ G   HG  EEAV LF+ M  +G+ P+ V+F+ +LSACS
Sbjct: 184 DAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 243

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
            +GL+   +E   SM  D+ I+P   HY+C+++ LGR GL+ EA  +I   PFK + ++ 
Sbjct: 244 HAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASIN 303

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
            ALL ACR+ G++E GK  A +L+ +EP   + YV+L NIY ++ +  +  +  + ++RK
Sbjct: 304 RALLGACRIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRK 363

Query: 565 GLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV 624
            ++  P  SWI+VK   H+F+  D+SH Q   IY KV+ MM  I + GYVP+ + +L DV
Sbjct: 364 NVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDV 423

Query: 625 -DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVV 683
            DE+++R L YHSEKLA+A+GLI+T   T ++++++ R+C DCHNAIK I+ V  REIV+
Sbjct: 424 EDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVL 483

Query: 684 RDASRFHHFKDGMCSCGDYW 703
           RDA+RFHHF+DG+CSCGDYW
Sbjct: 484 RDANRFHHFRDGVCSCGDYW 503



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 164/298 (55%), Gaps = 2/298 (0%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           ++ALELF ++  + G      T      AC  L  + + K++ ++ +  GF+ DL++ + 
Sbjct: 12  KKALELFSLIH-KSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSG 70

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           +L M+++CG M++A  +F+ +   + V+   +I+G +D+G+  +A  ++  + +      
Sbjct: 71  ILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPD 130

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             TFAT+I+AS+ +  +  G+QLH+  +K+    + FV  +L+DMY+KCG+IEDA  +F 
Sbjct: 131 EYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFK 190

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           +M+ +    WN ++ G A HG +EEA++L+  M+  G++ D  +F  I+  C+       
Sbjct: 191 KMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSE 250

Query: 351 AKQ-AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           A +  H+    +G   +I   S LVD   + G +++A  V + M  K   S N  + G
Sbjct: 251 AYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLG 308


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/606 (36%), Positives = 356/606 (58%), Gaps = 40/606 (6%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR------------- 177
           + + +++ +C  L  +   + +  Y++  G + DLY  N ++ M+ +             
Sbjct: 107 NVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLG 166

Query: 178 CGMMID-------------------ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G + D                    R++F+ MPE++LVS N IIAG   +G Y E   +
Sbjct: 167 AGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRM 226

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
             ++        S T ++++   A    IS GK++H C+++ G   +++V+ +LIDMY+K
Sbjct: 227 IREMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAK 286

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           C  + D+  VF  ++E+  + WN+IIAG   +G  +E L  + +M  + +K   ++FS I
Sbjct: 287 CTRVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSI 346

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C  L +L   KQ H  + R+GF  +I   S+LVD Y+K G I  A+ +FD+M  +++
Sbjct: 347 MPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDM 406

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SW A+I G   HG+  +A+ELFEQM   G++       AVL+ACS  GL +  W+ F S
Sbjct: 407 VSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNS 459

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M+RD  I P   HYA + +LLGR G L+EA+  I G     T ++WA LL+ACRV+ N++
Sbjct: 460 MTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNID 519

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           + +  A ++  ++P     Y++L NIY+++ + KEAA+   ++RR G+R  PACSWIEVK
Sbjct: 520 MAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVK 579

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVL-SYHSE 637
            + + F++GD+SH   ++I   ++ ++  + K GYVP+   +  DV+E++++ L   HSE
Sbjct: 580 NKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSE 639

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           +LA+ FG+INT     +++ ++ R+C DCH A K I+ + GREIVVRD SRFHHFK+G C
Sbjct: 640 RLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTC 699

Query: 698 SCGDYW 703
           SCGDYW
Sbjct: 700 SCGDYW 705



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 110/251 (43%), Gaps = 33/251 (13%)

Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
           ++R    ++  S  +QLH+  LK     ++     L+ +YS    + D+  +F+ +    
Sbjct: 12  LLRNPLSIKSRSQAQQLHAQVLKFQ-ASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPP 70

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
            + W ++I  Y  HG   ++L  +  M  SG+  DH  F  +++ C  L  L   +  H 
Sbjct: 71  ALAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMDLNLGESLHG 130

Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDA------------------------------ 386
            ++R G   D+   +AL++ YSK   +E++                              
Sbjct: 131 YIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLSED 190

Query: 387 --RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
             R +F+ M  K+++SWN +IAG   +G  EE + +  +M    ++P+  T  +VL   +
Sbjct: 191 SVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIA 250

Query: 445 RSGLSERGWEI 455
            +    RG EI
Sbjct: 251 ENVDISRGKEI 261



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 96/213 (45%), Gaps = 8/213 (3%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N  + E L  F  +         S ++ +++ AC  L ++   K++  Y+  
Sbjct: 310 SIIAGCVQNGLFDEGLRFFRQM-LMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITR 368

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF+ ++++ + ++ M+ +CG +  A+++FD M  R++VS   +I G    G   +A   
Sbjct: 369 NGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDA--- 425

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
            ++L+E+    G +  A +   S G  +    K  +S     G    V    A+ D+  +
Sbjct: 426 -IELFEQMETEGIK--AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGR 482

Query: 279 CGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALH 310
            G +E+A      M    T   W T+++   +H
Sbjct: 483 AGRLEEAYDFICGMHIGPTGSIWATLLSACRVH 515


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/623 (37%), Positives = 367/623 (58%), Gaps = 56/623 (8%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           ++ AC  L+++ ++K + SY +  G   D ++ N ++  + +CG M DA ++F+ M  ++
Sbjct: 265 ILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKD 324

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLF-------------------------------LDLWE 224
           +VS N ++ G   SG++  AF LF                               LD ++
Sbjct: 325 VVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQ 384

Query: 225 EF----SDCGSRTFATMIRASAGLELISVGKQLHSCALK------------MGFGDNVFV 268
           +     S+  S T  +++ A A L  +S G ++H+ +LK             G G+++ V
Sbjct: 385 QMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMV 444

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMS--EKTTVGWNTIIAGYALHGYSEEALDLYYEM--R 324
             ALIDMYSKC S + A+ +FD +   E+  V W  +I GYA +G S +AL ++ EM  +
Sbjct: 445 YNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISK 504

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG---FGLDIVANSALVDFYSKWG 381
              V  + +T S I+  C  LA+L   KQ HA + RH      +  VAN  L+D YSK G
Sbjct: 505 PYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVAN-CLIDMYSKCG 563

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            ++ AR+VFD M  +N +SW ++++GYG HGRG+EA+++F++M   G  P+ ++FL +L 
Sbjct: 564 DVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLY 623

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           ACS SG+ ++G   F  M RD+ +   A HYAC+I+LL R G LD+A+  I+  P + + 
Sbjct: 624 ACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSA 683

Query: 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            +W ALL+ACRV+ N+EL ++A  KL  M+ E   +Y ++ NIY ++ + K+ A + + +
Sbjct: 684 VIWVALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLM 743

Query: 562 RRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLL 621
           ++ G++  P CSW++ KK    F  GD+SH  + EIY  ++R++  I   GYVPE    L
Sbjct: 744 KKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFAL 803

Query: 622 PDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGRE 680
            DVD++E+  +LS HSEKLA+A+GL+ TS   P++I ++ R+C DCH+A   I+ +   E
Sbjct: 804 HDVDDEEKNNLLSEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHE 863

Query: 681 IVVRDASRFHHFKDGMCSCGDYW 703
           I+VRD+SRFHHFK+G CSCG YW
Sbjct: 864 IIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 143/613 (23%), Positives = 245/613 (39%), Gaps = 135/613 (22%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKR-----------------VFSYMLSTGFEPDLYM 167
           G DV  + + +L+  C  + ++R++ +                   + + S  +     +
Sbjct: 26  GRDVSPTHFASLLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSL 85

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
              V+  ++ CG   DA  + + +     V  N+++   I  G    A  +   +    +
Sbjct: 86  GTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGT 145

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
                T    ++A   L     G+ LH      GF  NVFV  AL+ MYS+CGS+EDA  
Sbjct: 146 KPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASL 205

Query: 288 VFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEM------RDSGVKMDHFTFSMI 338
           VFDE++ K     + WN+I+A +        AL+L+ EM      + +  + D  +   I
Sbjct: 206 VFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNI 265

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C  L +L   K+ H+  +R+G   D    +AL+D Y+K G + DA  VF+ M  K+V
Sbjct: 266 LPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDV 325

Query: 399 ISWNAL-----------------------------------IAGYGNHGRGEEAVELFEQ 423
           +SWNA+                                   IAGY   G  +EA++ F+Q
Sbjct: 326 VSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQ 385

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWE----------------------------- 454
           M+L+G  PN VT +++LSAC+  G   +G E                             
Sbjct: 386 MILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVY 445

Query: 455 ------------------IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA---FALIR 493
                             IF S+ R  +     + +  MI    + G  ++A   F+ + 
Sbjct: 446 NALIDMYSKCRSFKAARSIFDSIPRRER---NVVTWTVMIGGYAQYGDSNDALKIFSEMI 502

Query: 494 GAPFKTTKNMW--AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV---LLNIYNSS 548
             P+    N +  + +L AC     L +GK     +      + S Y V   L+++Y+  
Sbjct: 503 SKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKC 562

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           G +  A  V  ++ ++        SW  +       +SG   H + KE     D+M    
Sbjct: 563 GDVDTARNVFDSMPKRN-----EVSWTSM-------MSGYGMHGRGKEALDIFDKM---- 606

Query: 609 SKHGYVPEEKTLL 621
            K G+VP++ + L
Sbjct: 607 QKAGFVPDDISFL 619


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/594 (36%), Positives = 356/594 (59%), Gaps = 2/594 (0%)

Query: 111  REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
            REA E+F+ +   G       T  +L+SA   L  +   + + + +   GFE D  + N 
Sbjct: 413  REAAEVFKRMRHSGVIP-NQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNA 471

Query: 171  VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
            ++ M+++ G + D  R+F+    R+L+S N +++G  D+        +F  +  E  +  
Sbjct: 472  LVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPN 531

Query: 231  SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
              TF +++R+ + L  + +GKQ+H+  +K     N FV  AL+DMY+K   +EDA+ +F+
Sbjct: 532  MYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFN 591

Query: 291  EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
             + ++    W  I+AGYA  G  E+A+  + +M+  GVK + FT +  +  C+R+A+L+ 
Sbjct: 592  RLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDS 651

Query: 351  AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
             +Q H+  ++ G   D+   SALVD Y+K G +EDA  VFD ++ ++ +SWN +I GY  
Sbjct: 652  GRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQ 711

Query: 411  HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
            HG+G +A++ FE ML  G  P+ VTF+ VLSACS  GL E G + F S+S+ + I P   
Sbjct: 712  HGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIE 771

Query: 471  HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
            HYACM+++LGR G   E  + I      +   +W  +L AC+++GN+E G+ AA KL+ +
Sbjct: 772  HYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFEL 831

Query: 531  EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
            EPE  SNY++L N++ + G   +   V   +  +G++  P CSW+EV  Q HVFLS D S
Sbjct: 832  EPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGS 891

Query: 591  HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTS 649
            H + +EI+ K+  +  ++   GY P    +L +V D ++Q +L YHSE+LA+AF L++TS
Sbjct: 892  HPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTS 951

Query: 650  DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
                ++I ++ RIC DCH+ +K I+ +T +E+VVRD + FHHFK+G CSC ++W
Sbjct: 952  TRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/320 (31%), Positives = 171/320 (53%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G +    TY   + AC     +   K+V +  +  G   DL++ + ++ ++ +CG M+ A
Sbjct: 224 GVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLA 283

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
            R+F  MP++N VS N ++ G    GD  +   LF  +     +    T +T+++  A  
Sbjct: 284 ERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANS 343

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             +  G+ +HS A+++G   + F+SC L+DMYSKCG   DA  VF  + +   V W+ II
Sbjct: 344 GNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAII 403

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
                 G S EA +++  MR SGV  + FT + ++   T L  L + +  HA + ++GF 
Sbjct: 404 TCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFE 463

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D    +ALV  Y K G ++D   VF+    +++ISWNAL++G+ ++   +  + +F QM
Sbjct: 464 YDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQM 523

Query: 425 LLNGMRPNHVTFLAVLSACS 444
           L  G  PN  TF+++L +CS
Sbjct: 524 LAEGFNPNMYTFISILRSCS 543



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 173/315 (54%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y  ++  C     + E K +   ++ +G  PD ++ N ++ ++ +CG    A ++F E+P
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           ER++VS   +I G +  G    A  LF ++  E  +    T+AT ++A +    +  GKQ
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H+ A+K+G   ++FV  AL+D+Y+KCG +  A+ VF  M ++  V WN ++ G+A  G 
Sbjct: 251 VHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGD 310

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
           +E+ L+L+  M  S +    FT S +++ C    +L   +  H+  +R G  LD   +  
Sbjct: 311 AEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCC 370

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           LVD YSK G   DA  VF ++   +V+SW+A+I      G+  EA E+F++M  +G+ PN
Sbjct: 371 LVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPN 430

Query: 433 HVTFLAVLSACSRSG 447
             T  +++SA +  G
Sbjct: 431 QFTLASLVSAATDLG 445



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 158/335 (47%), Gaps = 36/335 (10%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           R ++ M+R  A    ++ GK +H   +K G   +  +  +L+++Y+KCGS   A  VF E
Sbjct: 129 RQYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGE 188

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           + E+  V W  +I G+   GY   A++L+ EMR  GV+ + FT++  ++ C+    LE  
Sbjct: 189 IPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFG 248

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           KQ HA  ++ G   D+   SALVD Y+K G +  A  VF  M  +N +SWNAL+ G+   
Sbjct: 249 KQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQM 308

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G  E+ + LF +M  + +  +  T   VL  C+ SG + R  +I  S++     +     
Sbjct: 309 GDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSG-NLRAGQIVHSLAIRIGCELDEFI 367

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
             C++++  + GL  +A  +                                      +E
Sbjct: 368 SCCLVDMYSKCGLAGDALKV-----------------------------------FVRIE 392

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
              + ++  ++   +  G+ +EAAEV + +R  G+
Sbjct: 393 DPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGV 427


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/598 (36%), Positives = 359/598 (60%), Gaps = 3/598 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N  YR+ +E++  + + G    G  T+  ++ AC  L        +   ++  GF  D++
Sbjct: 132 NNMYRDTVEMYRWMRWTGVHPDGF-TFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVF 190

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           ++N ++ ++ +CG +  A+ +FD +  R +VS   II+G   +G  +EA  +F  +    
Sbjct: 191 VQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNG 250

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                    +++RA   ++ +  G+ +H   +KMG  D   +  +L   Y+KCG +  A+
Sbjct: 251 VKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAK 310

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
             FD+M     + WN +I+GYA +G++EEA++L++ M    +K D  T    +    ++ 
Sbjct: 311 SFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVG 370

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           SLE A+     + +  +G DI  N++L+D Y+K G +E AR VFD+   K+V+ W+A+I 
Sbjct: 371 SLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIM 430

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GYG HG+G EA+ L+  M   G+ PN VTF+ +L+AC+ SGL + GWE+F  M +D +I 
Sbjct: 431 GYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCM-KDFEIV 489

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           PR  HY+C+++LLGR G L EA A I   P +   ++W ALL+AC++   + LG++AA K
Sbjct: 490 PRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANK 549

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           L+ ++P    +YV L N+Y SS      A V   +R KGL      S IE+  +   F  
Sbjct: 550 LFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHV 609

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGL 645
           GD+SH   KEI+ ++ R+   + + G+VP  +++L D++ E+++  LS+HSE++AVA+GL
Sbjct: 610 GDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGL 669

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I+T+  T L+I ++ R C +CH+AIKLI+ +  REI+VRDA+RFHHFKDG+CSCGDYW
Sbjct: 670 ISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 210/420 (50%), Gaps = 9/420 (2%)

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
           R + ++ + ++ +G + + ++  +++      G +  AR+LFDE    ++   N II   
Sbjct: 70  RHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSY 129

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ--LHSCALKMGFGD 264
             +  Y +   ++   W  ++      F       A  EL+  G    +H   +K GFG 
Sbjct: 130 SRNNMYRDTVEMY--RWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGS 187

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           +VFV   L+ +Y+KCG I  A+ VFD +  +T V W +II+GYA +G + EAL ++ +MR
Sbjct: 188 DVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMR 247

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           ++GVK D      I+R  T +  LE  +  H  +++ G   +     +L  FY+K G + 
Sbjct: 248 NNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVT 307

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            A+  FD+M   NVI WNA+I+GY  +G  EEAV LF  M+   ++P+ VT  + + A +
Sbjct: 308 VAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASA 367

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
           + G  E    +   +S+ +      ++ + +I++  + G ++ A  +      K    MW
Sbjct: 368 QVGSLELAQWMDDYVSKSNYGSDIFVNTS-LIDMYAKCGSVEFARRVFDRNSDKDVV-MW 425

Query: 505 AALLTACRVNGN--LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           +A++    ++G     +  +   K  G+ P  ++ ++ LL   N SG +KE  E+   ++
Sbjct: 426 SAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVT-FIGLLTACNHSGLVKEGWELFHCMK 484



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 96/225 (42%), Gaps = 7/225 (3%)

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
           H  Q H  LV  G   +    + LV+  S  G+I  AR +FD+    +V  WNA+I  Y 
Sbjct: 71  HLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYS 130

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE-IFQSMSRDHKIKPR 468
            +    + VE++  M   G+ P+  TF  VL AC+   L + G   I       +     
Sbjct: 131 RNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTE--LLDFGLSCIIHGQIIKYGFGSD 188

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL--ELGKFAAEK 526
                 ++ L  + G +  A  +  G   +T  + W ++++    NG     L  F+  +
Sbjct: 189 VFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVS-WTSIISGYAQNGKAVEALRMFSQMR 247

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
             G++P+ ++  V +L  Y     L++   +   + + GL   PA
Sbjct: 248 NNGVKPDWIA-LVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPA 291


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/570 (36%), Positives = 347/570 (60%), Gaps = 1/570 (0%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +++ A + L S+   K +    + T  + + ++   +L M+ +CG + DAR  F+ +P  
Sbjct: 268 SVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYD 327

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           +++  + +I+    S    +AF LFL L          + +++++A   +  +  GKQ+H
Sbjct: 328 DVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIH 387

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           + A+K+G   ++FV  AL+D Y+KC  ++ +  +F  + +   V WNTI+ G++  G  E
Sbjct: 388 NHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGE 447

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EAL ++ EM+ + +     T+S ++R C   AS+ HA Q H  + +  F  D V  ++L+
Sbjct: 448 EALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLI 507

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D Y+K G I DA  VF  ++ +++ISWNA+I+GY  HG+  +A+ELF++M  + +  N +
Sbjct: 508 DTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDI 567

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           TF+A+LS CS +GL   G  +F SM  DH IKP   HY C++ LLGR G L++A   I  
Sbjct: 568 TFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGD 627

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            P   +  +W ALL++C ++ N+ LG+F+AEK+  +EP+  + YV+L N+Y ++G L + 
Sbjct: 628 IPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQV 687

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
           A + +++R  G+R +P  SW+E+K + H F  G   H   + I   ++ + L+ S+ GY+
Sbjct: 688 ALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYI 747

Query: 615 PEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLI 673
           P+   +L DVD EQ+ R+L  HSE+LA+A+GL+ T    P++I+++ R C DCH A  +I
Sbjct: 748 PDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVI 807

Query: 674 AMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + +  REI+VRD +RFHHF+DG CSCGDYW
Sbjct: 808 SKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 127/507 (25%), Positives = 225/507 (44%), Gaps = 54/507 (10%)

Query: 137 ISACIGLRSIREVKRVFSYMLSTGF--EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +  CI     R  + V  +++  G     DL+  N +L M+ + G +  ARRLFD MPER
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPER 125

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           N+VS   ++      GD+  A  LF  L  E  +       TM++ +  ++   +   +H
Sbjct: 126 NMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVH 185

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           SCA K+G   N FV   LID YS C  + DA+ VF+ +  K  V W  +++ Y+ +   E
Sbjct: 186 SCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPE 245

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
            A  ++ +MR SG K + F  + +++    L S+   K  H   ++     +     AL+
Sbjct: 246 NAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALL 305

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D Y+K G I+DAR  F+ +   +VI  + +I+ Y    + E+A ELF +++ + + PN  
Sbjct: 306 DMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEY 365

Query: 435 TFLAVLSACSRSGLSERGWEIF-------------------------QSMSRDHKI---- 465
           +  +VL AC+     + G +I                            M    KI    
Sbjct: 366 SLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSL 425

Query: 466 -KPRAMHYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWAALLTACRVNGNLELGK 521
                + +  ++    + GL +EA ++   ++ A    T+  ++++L AC    ++   +
Sbjct: 426 RDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASI---R 482

Query: 522 FAAEKLYGMEPEKLSNYVV----LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
            A +    +E    +N  V    L++ Y   G +++A +V + L  + +      SW   
Sbjct: 483 HAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDI-----ISW--- 534

Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRM 604
               +  +SG   H Q  +     DRM
Sbjct: 535 ----NAIISGYALHGQAADALELFDRM 557



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 85/181 (46%), Gaps = 2/181 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY +++ AC    SIR   ++   +  + F  D  + N ++  + +CG + DA ++F  +
Sbjct: 467 TYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHL 526

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            ER+++S N II+G    G   +A  LF  + +   +    TF  ++   +   L++ G 
Sbjct: 527 MERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGL 586

Query: 252 QL-HSCALKMGFGDNVFVSCALIDMYSKCGSIEDA-QGVFDEMSEKTTVGWNTIIAGYAL 309
            L  S  +  G   ++     ++ +  + G + DA Q + D  S  + + W  +++   +
Sbjct: 587 SLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCII 646

Query: 310 H 310
           H
Sbjct: 647 H 647


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/629 (36%), Positives = 358/629 (56%), Gaps = 38/629 (6%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG-FEPDLYMRNR 170
           EAL +F  +  EG     S T  + +SAC  L  +R  + +  Y +     + DL + N 
Sbjct: 345 EALSVFRKMVLEG-VKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNS 403

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL-------- 222
           ++  + +C  +  ARR F  + + +LVS N ++AG    G + EA  L  ++        
Sbjct: 404 LVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPD 463

Query: 223 ---WE----------------EF--------SDCGSRTFATMIRASAGLELISVGKQLHS 255
              W                 EF         D  + T +  + A   +  + +GK++H 
Sbjct: 464 IITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHG 523

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
             L+     +  V  ALI MYS C S+E A  VF E+S +  V WN+II+  A  G S  
Sbjct: 524 YVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVN 583

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           ALDL  EM  S V+++  T    +  C++LA+L   K+ H  ++R G        ++L+D
Sbjct: 584 ALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLID 643

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            Y + G I+ +R +FD M  ++++SWN +I+ YG HG G +AV LF+Q    G++PNH+T
Sbjct: 644 MYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHIT 703

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
           F  +LSACS SGL E GW+ F+ M  ++ + P    YACM++LL R G  +E    I   
Sbjct: 704 FTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKM 763

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           PF+    +W +LL ACR++ N +L ++AA  L+ +EP+   NYV++ NIY+++G+ ++AA
Sbjct: 764 PFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAA 823

Query: 556 EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
           ++   ++ +G+   P CSWIEVK++ H F+ GD SH   ++I  K++ +  +I + GYVP
Sbjct: 824 KIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVP 883

Query: 616 EEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
           +   +L DVDE E+   L  HSEK+A+AFGLI+T+  TPL+I+++ R+C DCH+A K I+
Sbjct: 884 DTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFIS 943

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            V  R+I++RD  RFHHF DG+CSCGDYW
Sbjct: 944 KVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 171/356 (48%), Gaps = 42/356 (11%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           Y E ++LF ++  EG        +  +  AC  L++ R  K V+ YMLS GFE +  ++ 
Sbjct: 171 YEETIKLFYLMVNEG-VRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKG 229

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            +L M ++CG M  ARR F+E+  +++   N++++G    G++ +A     D+  + S  
Sbjct: 230 SILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDM--KLS-- 285

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
                                          G   +     A+I  Y++ G  E+A   F
Sbjct: 286 -------------------------------GVKPDQVTWNAIISGYAQSGQFEEASKYF 314

Query: 290 DEMS-----EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
            EM      +   V W  +IAG   +GY  EAL ++ +M   GVK +  T +  +  CT 
Sbjct: 315 LEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTN 374

Query: 345 LASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
           L+ L H ++ H   ++      D++  ++LVD+Y+K   +E AR  F  +   +++SWNA
Sbjct: 375 LSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNA 434

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           ++AGY   G  EEA+EL  +M   G+ P+ +T+  +++  ++ G  +   E FQ M
Sbjct: 435 MLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRM 490



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 209/439 (47%), Gaps = 40/439 (9%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y +++  C  L ++R   +V + ++  G +   ++ +R+L ++ + G + DARR+FD+M 
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           ERN+ S   I+      GDY E   LF  +  E        F  + +A + L+   VGK 
Sbjct: 152 ERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKD 211

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           ++   L +GF  N  V  +++DM+ KCG ++ A+  F+E+  K    WN +++GY   G 
Sbjct: 212 VYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGE 271

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            ++AL    +M+ SGVK D  T++ II    +    E A +                   
Sbjct: 272 FKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASK------------------- 312

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
              ++ + G ++D +         NV+SW ALIAG   +G   EA+ +F +M+L G++PN
Sbjct: 313 ---YFLEMGGLKDFK--------PNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPN 361

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA---F 489
            +T  + +SAC+   L   G EI     +  ++    +    +++   +   ++ A   F
Sbjct: 362 SITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKF 421

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
            +I+    +T    W A+L    + G+ E  +   +  K  G+EP+ ++ +  L+  +  
Sbjct: 422 GMIK----QTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIIT-WNGLVTGFTQ 476

Query: 548 SGKLKEAAEVIRTLRRKGL 566
            G  K A E  + +   G+
Sbjct: 477 YGDGKAALEFFQRMHSMGM 495


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/598 (37%), Positives = 352/598 (58%), Gaps = 4/598 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N+ Y E++++F  L  E    + ++T   ++ A   L+ +R   ++ S    TG     Y
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDY 257

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +    + ++ +CG +     LF E  + ++V+ N +I G   +G+   +  LF +L    
Sbjct: 258 VLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSG 317

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
           +   S T  +++  S  L LI     +H   LK  F  +  VS AL  +YSK   IE A+
Sbjct: 318 ARLRSSTLVSLVPVSGHLMLIYA---IHGYCLKSNFLSHASVSTALTTVYSKLNEIESAR 374

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +FDE  EK+   WN +I+GY  +G +E+A+ L+ EM+ S    +  T + I+  C +L 
Sbjct: 375 KLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLG 434

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           +L   K  H  +    F   I  ++AL+  Y+K G I +AR +FD M  KN ++WN +I+
Sbjct: 435 ALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMIS 494

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GYG HG+G+EA+ +F +ML +G+ P  VTFL VL ACS +GL + G EIF SM   +  +
Sbjct: 495 GYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFE 554

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P   HYACM+++LGR G L  A   I     +   ++W  LL ACR++ +  L +  +EK
Sbjct: 555 PSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEK 614

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           L+ ++P+ +  +V+L NI+++     +AA V +T +++ L   P  + IE+ + PHVF S
Sbjct: 615 LFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTS 674

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVL-SYHSEKLAVAFGL 645
           GDQSH Q KEIY K++++  ++ + GY PE +  L DV+E+E+ ++   HSE+LA+AFGL
Sbjct: 675 GDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGL 734

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I T   T ++I+++ R+C DCH   KLI+ +T R IVVRDA+RFHHFKDG+CSCGDYW
Sbjct: 735 IATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 129/465 (27%), Positives = 225/465 (48%), Gaps = 21/465 (4%)

Query: 106 LNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           +N+    +L +F  L         SSTY   ISA  G R  R  + +    +  G + +L
Sbjct: 95  VNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSEL 154

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            + + ++ M+ +   + DAR++FD MPE++ +  N +I+G   +  Y+E+  +F DL  E
Sbjct: 155 LLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINE 214

Query: 226 F-SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
             +   + T   ++ A A L+ + +G Q+HS A K G   + +V    I +YSKCG I+ 
Sbjct: 215 SCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKM 274

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
              +F E  +   V +N +I GY  +G +E +L L+ E+  SG ++   T   ++ +   
Sbjct: 275 GSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGH 334

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           L  +      H   ++  F      ++AL   YSK   IE AR +FD+   K++ SWNA+
Sbjct: 335 LMLI---YAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAM 391

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG-LSERGWEIFQSMSRDH 463
           I+GY  +G  E+A+ LF +M  +   PN VT   +LSAC++ G LS   W     + R  
Sbjct: 392 ISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKW--VHDLVRST 449

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN--MWAALLTACRVNGNLELGK 521
             +        +I +  + G + EA  L       T KN   W  +++   ++G    G+
Sbjct: 450 DFESSIYVSTALIGMYAKCGSIAEARRLF---DLMTKKNEVTWNTMISGYGLHGQ---GQ 503

Query: 522 FAAEKLY-----GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            A    Y     G+ P  ++ ++ +L   + +G +KE  E+  ++
Sbjct: 504 EALNIFYEMLNSGITPTPVT-FLCVLYACSHAGLVKEGDEIFNSM 547



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 113/512 (22%), Positives = 219/512 (42%), Gaps = 53/512 (10%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           SI  + +  + ++  GF  D+ +  ++       G +  AR +F  +   ++   N+++ 
Sbjct: 32  SISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMR 91

Query: 205 GMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
           G   +     +  +F  L +       S T+A  I A++G      G+ +H  A+  G  
Sbjct: 92  GFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCD 151

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
             + +   ++ MY K   +EDA+ VFD M EK T+ WNT+I+GY  +    E++ ++ ++
Sbjct: 152 SELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDL 211

Query: 324 -RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG-FGLDIVANSALVDFYSKWG 381
             +S  ++D  T   I+     L  L    Q H+   + G +  D V  +  +  YSK G
Sbjct: 212 INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVL-TGFISLYSKCG 270

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
           +I+    +F +    +++++NA+I GY ++G  E ++ LF++++L+G R    T ++++ 
Sbjct: 271 KIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVP 330

Query: 442 AC-------------------SRSGLSERGWEIFQSMSR--------DHKIKPRAMHYAC 474
                                S + +S     ++  ++         D   +     +  
Sbjct: 331 VSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNA 390

Query: 475 MIELLGREGLLDEAFALIR---GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           MI    + GL ++A +L R    + F         +L+AC   G L LGK+  + +   +
Sbjct: 391 MISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTD 450

Query: 532 PEKLSNYV--VLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
            E  S YV   L+ +Y   G + EA  +   + +K        +W       +  +SG  
Sbjct: 451 FES-SIYVSTALIGMYAKCGSIAEARRLFDLMTKKN-----EVTW-------NTMISGYG 497

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLL 621
            H Q +E       +  E+   G  P   T L
Sbjct: 498 LHGQGQEAL----NIFYEMLNSGITPTPVTFL 525



 Score = 46.6 bits (109), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 1/102 (0%)

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
           R  S+ H  Q HA ++ HGF  DI   + L    S  G I  AR +F  +   +V  +N 
Sbjct: 29  RSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNV 88

Query: 404 LIAGYGNHGRGEEAVELFEQMLLN-GMRPNHVTFLAVLSACS 444
           L+ G+  +     ++ +F  +  +  ++PN  T+   +SA S
Sbjct: 89  LMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAAS 130


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/546 (37%), Positives = 339/546 (62%), Gaps = 3/546 (0%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGF-EPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           Y  L+  C  L  + + + V ++++ + F +  L ++N ++ M+ +CG + DARR+FDEM
Sbjct: 90  YSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P +++V+   +IAG   +    +A LLF  +          T +++++AS     +  G 
Sbjct: 150 PTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGT 209

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           QLH+  LK G+  +V+V  AL+DMY++CG ++ AQ  FD M  K+ V WN +I+G+A  G
Sbjct: 210 QLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKG 269

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             E AL L ++M+    +  HFT+S +   C  + +LE  K  HA +++ G  L     +
Sbjct: 270 EGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGN 329

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
            L+D Y+K G I+DA+ VFD+++  +V+SWN ++ G   HG G+E ++ FEQML  G+ P
Sbjct: 330 TLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEP 389

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           N ++FL VL+ACS SGL + G   F+ M + +K++P   HY   ++LLGR GLLD A   
Sbjct: 390 NEISFLCVLTACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLLDRAERF 448

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           IR  P + T  +W ALL ACR++ N+ELG +AAE+ + ++P      ++L NIY S+G+ 
Sbjct: 449 IREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRMLLSNIYASAGRW 508

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
           ++ A+V + ++  G++  PACSW+E++   H+F++ D++H Q KEI  K + +  +I + 
Sbjct: 509 RDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPQIKEIRGKWEEISGKIKEI 568

Query: 612 GYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           GYVP+   +L  VD+QE +  L YHSEKLA+AF L+NT   +P++I ++ R+C DCH AI
Sbjct: 569 GYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKNIRVCGDCHAAI 628

Query: 671 KLIAMV 676
           K ++ +
Sbjct: 629 KFVSKI 634



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 149/318 (46%), Gaps = 2/318 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N R R+AL LF  +    G      T  +L+ A      +    ++ ++ L  G++  +Y
Sbjct: 167 NNRPRDALLLFPQM-LRLGLQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVY 225

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + + ++ M+ RCG M  A+  FD MP ++ VS N +I+G    G+   A  L   +  + 
Sbjct: 226 VGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKN 285

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 T++++  A A +  +  GK +H+  +K G     F+   L+DMY+K GSI+DA+
Sbjct: 286 FQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAK 345

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VFD + +   V WNT++ G A HG  +E LD + +M   G++ +  +F  ++  C+   
Sbjct: 346 RVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSG 405

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WNALI 405
            L+        + ++    D+      VD   + G ++ A     +M  +   + W AL+
Sbjct: 406 LLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALL 465

Query: 406 AGYGNHGRGEEAVELFEQ 423
                H   E  V   E+
Sbjct: 466 GACRMHKNMELGVYAAER 483



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 133/260 (51%), Gaps = 15/260 (5%)

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD--IVANSAL 373
           ALDL   ++   +  D+  +S +++ CTRL  +E  +  HA LV   F LD  +V  + +
Sbjct: 74  ALDL---IQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHF-LDNHLVLQNII 129

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           V+ Y+K G ++DAR +FD+M  K++++W ALIAG+  + R  +A+ LF QML  G++PNH
Sbjct: 130 VNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNH 189

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
            T  ++L A       + G ++  +    +  +      + ++++  R G +D A     
Sbjct: 190 FTLSSLLKASGSEHGLDPGTQL-HAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFD 248

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS----NYVVLLNIYNSSG 549
           G P K+  + W AL++     G    G+ A   L+ M+ +        Y  + +   S G
Sbjct: 249 GMPTKSEVS-WNALISGHARKGE---GEHALHLLWKMQRKNFQPTHFTYSSVFSACASIG 304

Query: 550 KLKEAAEVIRTLRRKGLRML 569
            L++   V   + + GL+++
Sbjct: 305 ALEQGKWVHAHMIKSGLKLI 324



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/207 (22%), Positives = 93/207 (44%), Gaps = 10/207 (4%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY ++ SAC  + ++ + K V ++M+ +G +   ++ N +L M+ + G + DA+R+FD +
Sbjct: 292 TYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL 351

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            + ++VS N ++ G    G   E    F  +     +    +F  ++ A +   L+  G 
Sbjct: 352 VKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGL 411

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALH 310
                  K     +V      +D+  + G ++ A+    EM  E T   W  ++    +H
Sbjct: 412 YYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMH 471

Query: 311 G-------YSEEALDLYYEMRDSGVKM 330
                    +E A +L  +  DSG +M
Sbjct: 472 KNMELGVYAAERAFEL--DPHDSGPRM 496


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/599 (38%), Positives = 352/599 (58%), Gaps = 12/599 (2%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA+E F  +  +G     ++T  +++ A   +  +   + V S+    G     ++   +
Sbjct: 194 EAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGL 253

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG-----MIDSGDYLEAFLLFLDLWEEF 226
           + ++ +CG +  AR LFD M + +LV+ N +I+G     M+ S   L   L+ L LW   
Sbjct: 254 ISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPN- 312

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
               S T   +I   +      + + LH   LK GF  N  VS A+  ++ +   +E A+
Sbjct: 313 ----SSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESAR 368

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
             FD M EKT   WN +I+GYA +G +E A+ L+ +M    V+ +  T S  +  C +L 
Sbjct: 369 KAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLG 428

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           +L   K  H  +       ++   +AL+D Y+K G I +AR +F+ M  KNV+SWNA+IA
Sbjct: 429 ALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIA 488

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GYG HG+G EA++L++ ML   + P   TFL+VL ACS  GL E GW++F+SM+ D+ I 
Sbjct: 489 GYGLHGQGAEALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAIN 548

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTT-KNMWAALLTACRVNGNLELGKFAAE 525
           P   H  CM++LLGR G L EAF LI   P       +W ALL AC V+ + +L K A++
Sbjct: 549 PGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQ 608

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
           KL+ ++PE    YV+L N++ S  +  EAA V +  + + L   P  + IE+  +PHVF+
Sbjct: 609 KLFELDPENSGYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFM 668

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFG 644
           +GD++H Q++ IY  ++++  ++ + GY PE +  L DV+E+E + ++  HSEKLA+AFG
Sbjct: 669 AGDRAHPQSEAIYSYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFG 728

Query: 645 LINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           L++T   T ++I+++ R+C DCHNA K I+ VT R IVVRDASRFHHF+DG+CSCGDYW
Sbjct: 729 LLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 178/338 (52%), Gaps = 15/338 (4%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           AR++FD +P  + V  N ++AG+  S + +E+F   +       D  + T A+++ A+A 
Sbjct: 168 ARKVFDTVPSPDTVLWNTLLAGLSGS-EAVESFARMVCDGSVRPD--ATTLASVLPAAAE 224

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           +  +++G+ +HS A K G  ++  V   LI +YSKCG +E A+ +FD M +   V +N +
Sbjct: 225 VADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNAL 284

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I+GY+++G    +++L+ E+   G+  +  T   +I + +       A+  H  +++ GF
Sbjct: 285 ISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGF 344

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             +   ++A+   + +   +E AR  FD M  K + SWNA+I+GY  +G  E AV LFEQ
Sbjct: 345 TANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQ 404

Query: 424 MLLNGMRPNHVTFLAVLSACSRSG-LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           M+   +RPN +T  + LSAC++ G LS   W     +  +  ++P       +I++  + 
Sbjct: 405 MVKLNVRPNPITISSTLSACAQLGALSLGKW--LHRIITEEDLEPNVYVMTALIDMYAKC 462

Query: 483 GLLDEAFALIRGAPFKTTKNM----WAALLTACRVNGN 516
           G + EA  +     F T  N     W A++    ++G 
Sbjct: 463 GSISEARRI-----FNTMDNKNVVSWNAMIAGYGLHGQ 495



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 91/360 (25%), Positives = 159/360 (44%), Gaps = 61/360 (16%)

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LH+ A+  G+  + FV+ AL  +Y     ++ A+ VFD +    TV WNT++AG +    
Sbjct: 136 LHALAVAAGYAADTFVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLS---- 191

Query: 313 SEEALDLYYEMR-DSGVKMDHFTFSMIIRICTRLASLEHAKQAHA-----GLVRHGFGLD 366
             EA++ +  M  D  V+ D  T + ++     +A +   +  H+     GL  H   L 
Sbjct: 192 GSEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVL- 250

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
               + L+  YSK G +E AR +FD M   +++++NALI+GY  +G    +V LF +++ 
Sbjct: 251 ----TGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMT 306

Query: 427 NGMRPNHVTFLAVLSACSRSG---LSE--RGWEIFQSMSRDHKIKPRAMHYAC------- 474
            G+ PN  T +A++   S  G   L++   G+ +    + +  +        C       
Sbjct: 307 LGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMES 366

Query: 475 ------------------MIELLGREGLLDEAFAL--------IRGAPFKTTKNMWAALL 508
                             MI    + GL + A AL        +R  P   +       L
Sbjct: 367 ARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISST-----L 421

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVV--LLNIYNSSGKLKEAAEVIRTLRRKGL 566
           +AC   G L LGK+   ++   E  + + YV+  L+++Y   G + EA  +  T+  K +
Sbjct: 422 SACAQLGALSLGKW-LHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNV 480


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/604 (35%), Positives = 359/604 (59%), Gaps = 1/604 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   V N  + +++ +F  +    G     +T  A++ A   L+ ++   ++    +  G
Sbjct: 2   ISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKCG 61

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F   + +   ++ +  +CG +  AR LF E+ +++L+SCN +I+G   +G+  ++  LF 
Sbjct: 62  FYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLFK 121

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           +L        S T   +I   +      +   +H   +K+G   +  VS AL  +Y +  
Sbjct: 122 ELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRLN 181

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            +  A+ +FDE +EKT   WN +I+G   +G ++ A+ L+  M+ + V  +  T + I+ 
Sbjct: 182 EMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILS 241

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C ++ +L   +  H+ +  + F  ++  ++AL+D Y+K G I  AR +FD M  KN ++
Sbjct: 242 ACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVT 301

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           WNA+I+GYG HG G+EA++LF  ML + ++P  +TFL+VL ACS +GL + G  IF +M 
Sbjct: 302 WNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMV 361

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
            D   +P A HYACM+++LGR G L +A   I+  P +    +W ALL AC ++ +  L 
Sbjct: 362 HDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLA 421

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
             A+EKL+ ++PE +  YV++ NIY+   K  +AA V +  ++K L   P C+ IE+ + 
Sbjct: 422 HVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQV 481

Query: 581 PHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKL 639
           PHVF SGDQSH Q+K IY ++D++  ++++ G+  E  T+L D++E+E+ + +  HSEKL
Sbjct: 482 PHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKL 541

Query: 640 AVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSC 699
           A+AFGLI+T     ++I+++ R+C DCHN  K ++ +T R IVVRDA+RFHHFKDG+CSC
Sbjct: 542 AIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLCSC 601

Query: 700 GDYW 703
           GDYW
Sbjct: 602 GDYW 605


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/595 (36%), Positives = 358/595 (60%), Gaps = 6/595 (1%)

Query: 112 EALELFEILEFEG-GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           EA+ELF  +E +  GF     T+ A+ISA +GL      +++  +++ T F  ++++ N 
Sbjct: 224 EAIELF--VEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNA 281

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
            L  + +   + + R+LF+EMPE + VS N+II      G   E+  LF +L     D  
Sbjct: 282 FLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRK 341

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           +  F TM+  +A    + +G+QLH+  +      +  VS +L+DMY+KCG  E+A  +F 
Sbjct: 342 NFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFL 401

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            +S ++TV W  +I+     G  E  L L+YEMR + V  D  TF+ +++    LAS+  
Sbjct: 402 RLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASILL 461

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            KQ H+ ++R GF +++ +  AL+D Y+    I+DA   F++M  +NV++WNAL++ Y  
Sbjct: 462 GKQLHSCVIRSGF-MNVYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQ 520

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           +G G+  ++ FE+M+++G +P+ V+FL +L+ACS   L E G + F  MS  + + P+  
Sbjct: 521 NGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKRE 580

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HY  M++ L R G  DEA  L+   PF+  + +W ++L +CR++ N  L + AA +L+ M
Sbjct: 581 HYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNM 640

Query: 531 EP-EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           +     + YV + NI+  +G+     +V + +R +G+R LPA SW+E+K + HVF + D 
Sbjct: 641 KVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVFSANDD 700

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINT 648
            H Q  EI RK++ +  ++ K GY P+      +VD++ +   L YHSE+LA+AF LINT
Sbjct: 701 KHPQQLEILRKIEMLAEQMEKEGYDPDISCAHQNVDKESKIDSLKYHSERLAIAFALINT 760

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            + +P+ ++++ R C DCH AIK+I+ + GREI VRD++RFHHF+DG CSCGDYW
Sbjct: 761 PEGSPILVMKNLRACTDCHAAIKVISKIVGREITVRDSNRFHHFRDGSCSCGDYW 815



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 165/323 (51%), Gaps = 6/323 (1%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLS-TGFEPDLYMRNRVLLMHVRCGMMID 183
           GFD  +S ++ +I        + + +++   M +   F  D+     ++  +V+ G +  
Sbjct: 38  GFDPITSRFNFMIKDLSERGQLCQARQLLDQMPNRNSFSIDI-----IISGYVKSGNLTV 92

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           ARR+FD+  ER +V+   +I     S  + +AF LF ++    S     T+ T++     
Sbjct: 93  ARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCND 152

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           LE+     Q H+  +K+G   N  V   L+D Y K G ++ A+ +F EM    +V +N +
Sbjct: 153 LEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVM 212

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I GYA +G +EEA++L+ EM++ G K   FTF+ +I     L      +Q H  +V+  F
Sbjct: 213 ITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSF 272

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             ++   +A +DFYSK   + + R +F++M   + +S+N +I  Y   G+ +E+++LF++
Sbjct: 273 IRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQE 332

Query: 424 MLLNGMRPNHVTFLAVLSACSRS 446
           +        +  F  +LS  + S
Sbjct: 333 LQFTTFDRKNFPFPTMLSIAASS 355



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 157/385 (40%), Gaps = 81/385 (21%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           N F    +I  Y K G++  A+ +FD+  E+T V W T+I  Y+      +A  L+ EM 
Sbjct: 73  NSFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMH 132

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
            SG + D+ T+  ++  C  L   +   QAHA +V+ G  L+    + L+D Y K G ++
Sbjct: 133 RSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLD 192

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            AR +F +M   + +S+N +I GY N+G                                
Sbjct: 193 SARRLFLEMCGWDSVSFNVMITGYANNG-------------------------------- 220

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA-LIRGAPFKTT--K 501
              L+E   E+F  M ++   KP    +A +I      GL D AF   I G   KT+  +
Sbjct: 221 ---LNEEAIELFVEM-QNLGFKPSDFTFAAVIS--ASVGLDDTAFGQQIHGFVVKTSFIR 274

Query: 502 NMWAALLTACRVNGNLELGKFA-------AEKLYGMEPE-KLSNYVVLLNIYNSSGKLKE 553
           N++          GN  L  ++         KL+   PE    +Y V++  Y   GK+KE
Sbjct: 275 NVFV---------GNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKE 325

Query: 554 AAEVIRTLRRKGL--RMLPACSWIEVKKQPHVFLSGDQSHVQT---------------KE 596
           + ++ + L+      +  P  + + +         G Q H Q                 +
Sbjct: 326 SIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVD 385

Query: 597 IYRK------VDRMMLEISKHGYVP 615
           +Y K       DR+ L +S    VP
Sbjct: 386 MYAKCGKFEEADRIFLRLSSRSTVP 410


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/595 (36%), Positives = 352/595 (59%), Gaps = 4/595 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           Y E+++LF  +E    F     T  +++ AC  L  +   K V  YM+++G+E D    N
Sbjct: 298 YEESIKLF--MEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASN 355

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+ +CG ++ ++ +F  M  ++ VS N +I   I +G + EA  LF  +  +    
Sbjct: 356 ILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKP- 414

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
            S T+  ++  S  L  + +GK+LH    KMGF  N+ VS  L+DMY+KCG + D+  VF
Sbjct: 415 DSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVF 474

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           + M  +  + WNTIIA           L +   MR  GV  D  T   I+ +C+ LA+  
Sbjct: 475 ENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKR 534

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             K+ H  + + G   D+   + L++ YSK G + ++  VF  M  K+V++W ALI+  G
Sbjct: 535 QGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACG 594

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            +G G++AV  F +M   G+ P+HV F+A++ ACS SGL E G   F  M +D+KI+PR 
Sbjct: 595 MYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRI 654

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HYAC+++LL R  LLD+A   I   P K   ++W ALL+ACR++G+ E+ +  +E++  
Sbjct: 655 EHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIE 714

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           + P+    YV++ NIY + GK  +   + ++++ +GL+  P CSW+E++ + +VF +G +
Sbjct: 715 LNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTK 774

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINT 648
              Q +E+ + +  +   ++K GY+   + +L D+DE E+R +L  HSE+LA+AFGL+NT
Sbjct: 775 FFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNT 834

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              TPLQ++++ R+C DCH   K I+ +  RE++VRDA+RFH FKDG CSCGDYW
Sbjct: 835 KPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 889



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 208/386 (53%), Gaps = 14/386 (3%)

Query: 83  SSLPDTQMKKPSAGIC---SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISA 139
           SS    ++  PS  +    S I  L  N  + EAL L+   +        + T+ ++I+A
Sbjct: 66  SSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQ-RIRLQPDTYTFPSVINA 124

Query: 140 CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSC 199
           C GL      K +   +L  GF  DLY+ N ++ M+ R   +  AR++F+EMP R++VS 
Sbjct: 125 CAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSW 184

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG----SRTFATMIRASAGLELISVGKQLHS 255
           N +I+G   +G + EA    L+++  F + G    S T ++++RA  GL  +  G  +H 
Sbjct: 185 NSLISGYNANGYWNEA----LEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHG 240

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
              K+G   +V V+  L+ MY K   + D + +FD+M  +  V WNT+I GY+  G  EE
Sbjct: 241 LIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEE 300

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           ++ L+ EM +   K D  T + I++ C  L  LE  K  H  ++  G+  D  A++ L++
Sbjct: 301 SIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILIN 359

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            Y+K G +  ++ VF  M CK+ +SWN++I  Y  +G  +EA++LF +M+   ++P+ VT
Sbjct: 360 MYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVT 418

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSR 461
           ++ +LS  ++ G    G E+   +++
Sbjct: 419 YVMLLSMSTQLGDLHLGKELHCDLAK 444



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 116/382 (30%), Positives = 199/382 (52%), Gaps = 15/382 (3%)

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P  N+   N II  +  +G + EA  L+ +         + TF ++I A AGL    + K
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            +H   L MGFG ++++  ALIDMY +   ++ A+ VF+EM  +  V WN++I+GY  +G
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
           Y  EAL++YY  R+ GV  D +T S ++R C  L S+E     H  + + G   D++ N+
Sbjct: 196 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNN 255

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
            L+  Y K+  + D R +FDKM+ ++ +SWN +I GY   G  EE+++LF +M +N  +P
Sbjct: 256 GLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKP 314

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSM-SRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           + +T  ++L AC   G  E G  +   M +  ++    A +   +I +  + G L  +  
Sbjct: 315 DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASN--ILINMYAKCGNLLASQE 372

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM-----EPEKLSNYVVLLNIY 545
           +  G   K + + W +++     NG+ +     A KL+ M     +P+ ++ YV+LL++ 
Sbjct: 373 VFSGMKCKDSVS-WNSMINVYIQNGSFD----EAMKLFKMMKTDVKPDSVT-YVMLLSMS 426

Query: 546 NSSGKLKEAAEVIRTLRRKGLR 567
              G L    E+   L + G  
Sbjct: 427 TQLGDLHLGKELHCDLAKMGFN 448


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/595 (36%), Positives = 359/595 (60%), Gaps = 3/595 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + EAL+LF  +    G      T+  +++   G+  +   ++V   +++     ++++ N
Sbjct: 222 HAEALDLFAAMR-RKGLAATRFTFSTVLTVATGVGDLCLGRQVHG-LVARATSSNVFVNN 279

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            +L  + +C  + + ++LF EM ER+ VS N++IAG   +        LF ++     D 
Sbjct: 280 SLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDR 339

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
            +  +A+++  +  +  I +GKQ+H+  + +G      V  ALIDMYSKCG ++ A+  F
Sbjct: 340 QALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNF 399

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
              ++KT V W  +I G   +G  EEAL L+  MR +G+  D  TFS  I+  + LA + 
Sbjct: 400 INKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIG 459

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             +Q H+ L+R G    + + SAL+D Y+K G +++A   FD+M  +N ISWNA+I+ Y 
Sbjct: 460 LGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYA 519

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
           ++G+ + A+++FE ML  G +P+ VTFL+VLSACS +GL+E   + F+ M  ++ I P  
Sbjct: 520 HYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWK 579

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HY+C+I+ LGR G  D+   ++   PF+    +W+++L +CR +GN +L + AAEKL+ 
Sbjct: 580 EHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFS 639

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           M     + YV+L NI+  +GK ++AA V + +R +GLR     SW+EVK + + F S DQ
Sbjct: 640 MGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQ 699

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINT 648
           ++    EI  +++R+  E+ K GY P+    L  VD+  +   L YHSE+LA+AF LINT
Sbjct: 700 TNPMITEIKDELERLYKEMDKQGYKPDTSCTLQQVDDDIKLESLKYHSERLAIAFALINT 759

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              TP++++++   C DCH+AIK+++ +  R+I+VRD+SRFHHFKDG CSCGDYW
Sbjct: 760 PPGTPIRVMKNLSACVDCHSAIKMMSKIVNRDIIVRDSSRFHHFKDGFCSCGDYW 814



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 191/426 (44%), Gaps = 55/426 (12%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN-LVSCNMIIAGMIDSGDYLE 214
           M+ TGF+P  Y  N +L   +  G +  AR LFD+MP RN   S N +++G   SG    
Sbjct: 25  MVKTGFDPATYRLNLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSA 84

Query: 215 AFLLFLDLWEEFSDC--------------GSRT------FATMIR--------------- 239
           A  LFL       D               G+R       F  M+R               
Sbjct: 85  AHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLN 144

Query: 240 ---ASAGLELISVGKQLHSCALKMGF-GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
              AS G     +   LH  ALK+G    NV V   L+D Y K G +  A+ VF EM  +
Sbjct: 145 LPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHR 204

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
            +V +N ++ G +  G   EALDL+  MR  G+    FTFS ++ + T +  L   +Q H
Sbjct: 205 DSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVH 264

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
            GLV      ++  N++L+DFYSK   +++ + +F +M+ ++ +S+N +IAGY  +    
Sbjct: 265 -GLVARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCAS 323

Query: 416 EAVELFEQML---LNGMRPNHVTFLAVLSACSRSGLSER--GWEIFQSMSRDHKIKPRAM 470
             + LF +M     +     + + L+V  +    G+ ++     +   +S +  +     
Sbjct: 324 IVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVG---- 379

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLY 528
               +I++  + G+LD A         KT  + W A++T C  NG  E  L  F   +  
Sbjct: 380 --NALIDMYSKCGMLDAAKTNFINKNDKTGVS-WTAMITGCVQNGQQEEALQLFCGMRRA 436

Query: 529 GMEPEK 534
           G+ P++
Sbjct: 437 GLSPDR 442


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/623 (36%), Positives = 364/623 (58%), Gaps = 3/623 (0%)

Query: 83  SSLPDTQMKKPSAGIC-SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACI 141
           S L  +Q+K+P+  +  + I  LV    + +A+ L+  +   GGF   + T   ++ AC 
Sbjct: 67  SKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMR-GGGFLPNNFTIPFVLKACA 125

Query: 142 GLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNM 201
               +R   ++ S ++  G++ D++++  +L ++V+C    DA ++FD++P++N+VS   
Sbjct: 126 RKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTA 185

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           II G I SG + EA   F  L E      S +   ++ A A L   + G+ +       G
Sbjct: 186 IITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSG 245

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
            G NVFV+ +L+DMY KCG++E A  +F  M EK  V W+T+I GYA +G  ++ALDL++
Sbjct: 246 MGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFF 305

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
           +M+   +K D +T   ++  C  L +L+    A + + R+ F  + V  +AL+D YSK G
Sbjct: 306 QMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCG 365

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            +  A  +F  M  K+ + WNA++ G   +G  +    LF  +  +G+RP+  TF+ +L 
Sbjct: 366 SVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLC 425

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
            C+  G    G + F +M R   + P   HY CM++LLGR GLL+EA  LI   P K   
Sbjct: 426 GCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNA 485

Query: 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            +W ALL  C+++ +  L +   +KL  +EP    NYV L NIY+ + + +EA ++  T+
Sbjct: 486 VVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTM 545

Query: 562 RRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLL 621
           + + ++ + ACSWIE+    H FL GD+SH  +++IY K+D +  E+   G+VP  + +L
Sbjct: 546 KEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVL 605

Query: 622 PDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGRE 680
            D++E+E +  L YHSEKLAVAFGLI +     +++V++ R+C DCH+AIKLI+ +T RE
Sbjct: 606 FDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKRE 665

Query: 681 IVVRDASRFHHFKDGMCSCGDYW 703
           I++RD +RFH F DG CSC DYW
Sbjct: 666 IIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 191/422 (45%), Gaps = 64/422 (15%)

Query: 241 SAGLELISVGKQLHSCALKMGFGD-----NVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
           S GL   +  K +H+  L++         N+ + CAL       GS   ++ VF ++ E 
Sbjct: 23  SNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCAL-----DFGSTNYSKLVFSQVKEP 77

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
               WNT+I G       ++A+ LY  MR  G   ++FT   +++ C R   +    + H
Sbjct: 78  NIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIH 137

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
           + LV+ G+  D+   ++L+  Y K    +DA  VFD +  KNV+SW A+I GY + G   
Sbjct: 138 SLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFR 197

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSG-----------LSERGW--EIFQSMS-R 461
           EA+  F+++L  G++P+  + + VL+AC+R G           +S+ G    +F + S  
Sbjct: 198 EAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLL 257

Query: 462 DHKIK----PRA------------MHYACMIELLGREGLLDEAFAL---IRGAPFKTTKN 502
           D  +K     RA            + ++ MI+     GL  +A  L   ++    K    
Sbjct: 258 DMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCY 317

Query: 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV---LLNIYNSSGKLKEAAEVIR 559
               +L+AC   G L+LG +A+  +     E LSN V+   L+++Y+  G + +A E+  
Sbjct: 318 TMVGVLSACATLGALDLGIWASSLMD--RNEFLSNPVLGTALIDMYSKCGSVTQAWEIFT 375

Query: 560 TLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKT 619
            +++K  R++     + +    H                + V  +   + KHG  P+E T
Sbjct: 376 AMKKKD-RVVWNAMMVGLSMNGHA---------------KAVFSLFSLVEKHGIRPDENT 419

Query: 620 LL 621
            +
Sbjct: 420 FI 421


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/599 (36%), Positives = 356/599 (59%), Gaps = 5/599 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGF---EPDLY 166
           Y  A+     ++  GG    +ST  +L+       ++ +   V +Y L       E  + 
Sbjct: 181 YHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVL 240

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD-LWEE 225
           +   +L M+ +C  ++ A R+F  M  RN V+ + +I G +      EAF LF D L E 
Sbjct: 241 IGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEG 300

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                + + A+ +R  A L  + +G QLH+   K G   ++    +L+ MY+K G I +A
Sbjct: 301 MCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEA 360

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
             +FDE++ K T+ +  +++GY  +G +EEA  ++ +M+   V+ D  T   +I  C+ L
Sbjct: 361 TMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHL 420

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           A+L+H + +H  ++  G  L+    ++L+D Y+K GRI+ +R VFDKM  ++++SWN +I
Sbjct: 421 AALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMI 480

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
           AGYG HG G+EA  LF  M   G  P+ VTF+ +++ACS SGL   G   F +M+  + I
Sbjct: 481 AGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGI 540

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
            PR  HY CM++LL R G LDEA+  I+  P K    +W ALL ACR++ N++LGK  + 
Sbjct: 541 LPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSR 600

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
            +  + PE   N+V+L NI++++G+  EAAEV    + KG +  P CSWIE+    H F+
Sbjct: 601 MIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGSLHAFV 660

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFG 644
            GDQSH  + +IY ++D ++++I K GY  +   +L D+ +E++++ L YHSEKLA+AFG
Sbjct: 661 GGDQSHPCSPDIYHELDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFG 720

Query: 645 LINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +++ ++   + + ++ R+C DCH AIK + +V  R I+VRDA+RFHHFK+G CSCGD+W
Sbjct: 721 VLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSCGDFW 779



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/475 (25%), Positives = 226/475 (47%), Gaps = 42/475 (8%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  ++ AC  L  +   + + ++  + G   DL++   ++ +++RC     A  +F +M
Sbjct: 101 TFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKM 160

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVG 250
           P R++V+ N ++AG  + G Y  A    LD+ +       + T  +++   A    +  G
Sbjct: 161 PMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQG 220

Query: 251 KQLHSCALKMGFGDN---VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
             +H+  L+     N   V +  AL+DMY+KC  +  A  VF  M+ +  V W+ +I G+
Sbjct: 221 TSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGF 280

Query: 308 ALHGYSEEALDLYYEMRDSGV-KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
            L     EA +L+ +M   G+  +   + +  +R+C  LA L    Q HA L + G   D
Sbjct: 281 VLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHAD 340

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           + A ++L+  Y+K G I +A  +FD++  K+ IS+ AL++GY  +G+ EEA  +F++M  
Sbjct: 341 LTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQA 400

Query: 427 NGMRPNHVTFLAVLSACS-----RSGLSERGWEIFQSMSRDHKIKPRA--MHYAC----- 474
             ++P+  T ++++ ACS     + G    G  I + ++ +  I      M+  C     
Sbjct: 401 CNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDL 460

Query: 475 ------------------MIELLGREGLLDEA---FALIRGAPFKTTKNMWAALLTACRV 513
                             MI   G  GL  EA   F  ++   F+     +  L+ AC  
Sbjct: 461 SRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSH 520

Query: 514 NGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
           +G +  GK   + +   YG+ P ++ +Y+ ++++    G L EA + I+++  K 
Sbjct: 521 SGLVTEGKHWFDTMTHKYGILP-RMEHYICMVDLLARGGFLDEAYQFIQSMPLKA 574



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 169/351 (48%), Gaps = 8/351 (2%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   VL  R  EA  LF+ +  EG   + +++  + +  C  L  +R   ++ + +  +G
Sbjct: 277 IGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSG 336

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              DL   N +L M+ + G++ +A  LFDE+  ++ +S   +++G + +G   EAFL+F 
Sbjct: 337 IHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFK 396

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +          T  ++I A + L  +  G+  H   +  G      +  +LIDMY+KCG
Sbjct: 397 KMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCG 456

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            I+ ++ VFD+M  +  V WNT+IAGY +HG  +EA  L+  M++ G + D  TF  +I 
Sbjct: 457 RIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIA 516

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKMLCK-N 397
            C+    +   K     +  H +G+   +     +VD  ++ G +++A      M  K +
Sbjct: 517 ACSHSGLVTEGKHWFDTMT-HKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKAD 575

Query: 398 VISWNALIAG---YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           V  W AL+     + N   G++   + +++   G   N V    + SA  R
Sbjct: 576 VRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGT-GNFVLLSNIFSAAGR 625



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 164/349 (46%), Gaps = 7/349 (2%)

Query: 175 HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF 234
           H+  G +  AR++FD +P  +  + N +I      G +  A  L+  +          TF
Sbjct: 43  HIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPNKYTF 102

Query: 235 ATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE 294
             +++A + L  +  G+ +H+ A  +G   ++FVS ALID+Y +C     A  VF +M  
Sbjct: 103 PFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPM 162

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSMIIRICTRLASLEHAKQ 353
           +  V WN ++AGYA HG    A+    +M+D  G++ +  T   ++ +  +  +L     
Sbjct: 163 RDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTS 222

Query: 354 AHAGLVRHGFGLD---IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            HA  +R     +   ++  +AL+D Y+K   +  A  VF  M  +N ++W+ALI G+  
Sbjct: 223 VHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVL 282

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLA-VLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
             R  EA  LF+ ML+ GM     T +A  L  C+       G ++   +++   I    
Sbjct: 283 CDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKS-GIHADL 341

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
                ++ +  + GL++EA  L      K T + + ALL+    NG  E
Sbjct: 342 TAGNSLLSMYAKAGLINEATMLFDEIAIKDTIS-YGALLSGYVQNGKAE 389


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/595 (36%), Positives = 352/595 (59%), Gaps = 4/595 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           Y E+++LF  +E    F     T  +++ AC  L  +   K V  YM+++G+E D    N
Sbjct: 357 YEESIKLF--MEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASN 414

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+ +CG ++ ++ +F  M  ++ VS N +I   I +G + EA  LF  +  +    
Sbjct: 415 ILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKP- 473

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
            S T+  ++  S  L  + +GK+LH    KMGF  N+ VS  L+DMY+KCG + D+  VF
Sbjct: 474 DSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVF 533

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           + M  +  + WNTIIA           L +   MR  GV  D  T   I+ +C+ LA+  
Sbjct: 534 ENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKR 593

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             K+ H  + + G   D+   + L++ YSK G + ++  VF  M  K+V++W ALI+  G
Sbjct: 594 QGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACG 653

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            +G G++AV  F +M   G+ P+HV F+A++ ACS SGL E G   F  M +D+KI+PR 
Sbjct: 654 MYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRI 713

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HYAC+++LL R  LLD+A   I   P K   ++W ALL+ACR++G+ E+ +  +E++  
Sbjct: 714 EHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIE 773

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           + P+    YV++ N+Y + GK  +   + ++++ +GL+  P CSW+E++ + +VF +G +
Sbjct: 774 LNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTK 833

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINT 648
              Q +E+ + +  +   ++K GY+   + +L D+DE E+R +L  HSE+LA+AFGL+NT
Sbjct: 834 FSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNT 893

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              TPLQ++++ R+C DCH   K I+ +  RE++VRDA+RFH FKDG CSCGDYW
Sbjct: 894 KPGTPLQVMKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFKDGACSCGDYW 948



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 208/386 (53%), Gaps = 14/386 (3%)

Query: 83  SSLPDTQMKKPSAGIC---SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISA 139
           SS    ++  PS  +    S I  L  N  + EAL L+   +        + T+ ++I+A
Sbjct: 125 SSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQ-RIRLQPDTYTFPSVINA 183

Query: 140 CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSC 199
           C GL      K +   +L  GF  DLY+ N ++ M+ R   +  AR++F+EMP R++VS 
Sbjct: 184 CAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSW 243

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG----SRTFATMIRASAGLELISVGKQLHS 255
           N +I+G   +G + EA    L+++  F + G    S T ++++RA  GL  +  G  +H 
Sbjct: 244 NSLISGYNANGYWNEA----LEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHG 299

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
              K+G   +V V+  L+ MY K   + D + +FD+M  +  V WNT+I GY+  G  EE
Sbjct: 300 LIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEE 359

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           ++ L+ EM +   K D  T + I++ C  L  LE  K  H  ++  G+  D  A++ L++
Sbjct: 360 SIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILIN 418

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            Y+K G +  ++ VF  M CK+ +SWN++I  Y  +G  +EA++LF +M+   ++P+ VT
Sbjct: 419 MYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVT 477

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSR 461
           ++ +LS  ++ G    G E+   +++
Sbjct: 478 YVMLLSMSTQLGDLXLGKELHCDLAK 503



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/381 (30%), Positives = 199/381 (52%), Gaps = 15/381 (3%)

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P  N+   N II  +  +G + EA  L+ +         + TF ++I A AGL    + K
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            +H   L MGFG ++++  ALIDMY +   ++ A+ VF+EM  +  V WN++I+GY  +G
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 254

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
           Y  EAL++YY  R+ GV  D +T S ++R C  L S+E     H  + + G   D++ N+
Sbjct: 255 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNN 314

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
            L+  Y K+  + D R +FDKM+ ++ +SWN +I GY   G  EE+++LF +M +N  +P
Sbjct: 315 GLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFKP 373

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSM-SRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           + +T  ++L AC   G  E G  +   M +  ++    A +   +I +  + G L  +  
Sbjct: 374 DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASN--ILINMYAKCGNLLASQE 431

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM-----EPEKLSNYVVLLNIY 545
           +  G   K + + W +++     NG+ +     A KL+ M     +P+ ++ YV+LL++ 
Sbjct: 432 VFSGMKCKDSVS-WNSMINVYIQNGSFD----EAMKLFKMMKTDVKPDSVT-YVMLLSMS 485

Query: 546 NSSGKLKEAAEVIRTLRRKGL 566
              G L    E+   L + G 
Sbjct: 486 TQLGDLXLGKELHCDLAKMGF 506


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/583 (37%), Positives = 350/583 (60%), Gaps = 10/583 (1%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           S++   I AC  L  I   K+        G++ D+++ + +++M+  CG + DAR++FDE
Sbjct: 77  SSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDE 136

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF------ATMIRASAGL 244
           +P+RN+VS   +I G   +G+ L+A  LF DL  + +D     F       ++I A + +
Sbjct: 137 IPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG--SIEDAQGVFDEMSEKTTVGWNT 302
               + + +HS  +K GF   V V   L+D Y+K G   +  A+ +FD++ +K  V +N+
Sbjct: 197 PAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256

Query: 303 IIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           I++ YA  G S EA +++  + ++  V  +  T S ++   +   +L   K  H  ++R 
Sbjct: 257 IMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRM 316

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           G   D++  ++++D Y K GR+E AR  FD+M  KNV SW A+IAGYG HG   +A+ELF
Sbjct: 317 GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELF 376

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
             M+ +G+RPN++TF++VL+ACS +GL   GW  F +M     ++P   HY CM++LLGR
Sbjct: 377 PAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGR 436

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
            G L +A+ LI+    K    +W++LL ACR++ N+EL + +  +L+ ++      Y++L
Sbjct: 437 AGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLL 496

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV 601
            +IY  +G+ K+   V   ++ +GL   P  S +E+  + HVFL GD+ H Q ++IY  +
Sbjct: 497 SHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFL 556

Query: 602 DRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSH 660
             +  ++ + GYV    ++  DVDE+E+ + L  HSEKLA+AFG++NT   + + +V++ 
Sbjct: 557 AELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNL 616

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           R+C DCHN IKLI+ +  RE VVRDA RFHHFKDG CSCGDYW
Sbjct: 617 RVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 189/372 (50%), Gaps = 22/372 (5%)

Query: 187 LFDEMPER-NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
           LF+   ++ ++ S N +IA +  SGD  EA L F  + +        +F   I+A + L 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
            I  GKQ H  A   G+  ++FVS ALI MYS CG +EDA+ VFDE+ ++  V W ++I 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIR 150

Query: 306 GYALHGYSEEALDLYYEM------RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           GY L+G + +A+ L+ ++       D  + +D      +I  C+R+ +    +  H+ ++
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVI 210

Query: 360 RHGFGLDIVANSALVDFYSKWGR--IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           + GF   +   + L+D Y+K G   +  AR +FD+++ K+ +S+N++++ Y   G   EA
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270

Query: 418 VELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
            E+F +++ N +   N +T   VL A S SG    G  I   + R   ++   +    +I
Sbjct: 271 FEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTSII 329

Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN----LELGKFAAEKLYGMEP 532
           ++  + G ++ A         K  ++ W A++    ++G+    LEL  F A    G+ P
Sbjct: 330 DMYCKCGRVETARKAFDRMKNKNVRS-WTAMIAGYGMHGHAAKALEL--FPAMIDSGVRP 386

Query: 533 EKLSNYVVLLNI 544
               NY+  +++
Sbjct: 387 ----NYITFVSV 394



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 95/212 (44%), Gaps = 12/212 (5%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA E+F  L         + T   ++ A     ++R  K +   ++  G E D+ +   +
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSI 328

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG +  AR+ FD M  +N+ S   +IAG    G   +A    L+L+    D G 
Sbjct: 329 IDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKA----LELFPAMIDSGV 384

Query: 232 R----TFATMIRA--SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
           R    TF +++ A   AGL  +   +  ++   + G    +     ++D+  + G ++ A
Sbjct: 385 RPNYITFVSVLAACSHAGLH-VEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA 443

Query: 286 QGVFDEMSEKT-TVGWNTIIAGYALHGYSEEA 316
             +   M  K  ++ W++++A   +H   E A
Sbjct: 444 YDLIQRMKMKPDSIIWSSLLAACRIHKNVELA 475


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/603 (37%), Positives = 354/603 (58%), Gaps = 13/603 (2%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           REA+  F  +    GF+    T  ++ SAC  L ++   K++ S+ + +G   D+     
Sbjct: 251 REAIRFFLDMVL-SGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDV--ECS 307

Query: 171 VLLMHVRC---GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDY-LEAFLLFLDLWEE- 225
           ++ M+ +C   G + D R++FD M + +++S   +I G + + +   EA  LF ++  + 
Sbjct: 308 LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQG 367

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
             +    TF++  +A   L    VGKQ+   A K G   N  V+ ++I M+ K   +EDA
Sbjct: 368 HVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDA 427

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
           Q  F+ +SEK  V +NT + G   +   E+A  L  E+ +  + +  FTF+ ++     +
Sbjct: 428 QRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANV 487

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
            S+   +Q H+ +V+ G   +    +AL+  YSK G I+ A  VF+ M  +NVISW ++I
Sbjct: 488 GSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMI 547

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
            G+  HG     +E F QM+  G++PN VT++A+LSACS  GL   GW  F SM  DHKI
Sbjct: 548 TGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKI 607

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
           KP+  HYACM++LL R GLL +AF  I   PF+    +W   L ACRV+ N ELGK AA 
Sbjct: 608 KPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAAR 667

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
           K+  ++P + + Y+ L NIY  +GK +E+ E+ R ++ + L     CSWIEV  + H F 
Sbjct: 668 KILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFY 727

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-----DEQEQRVLSYHSEKLA 640
            GD +H    +IY ++DR++ EI + GYVP+   +L  +     + +++R+L  HSEK+A
Sbjct: 728 VGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIA 787

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           VAFGLI+TS   P+++ ++ R+C DCHNA+K I+ V+GREIV+RD +RFHHFKDG CSC 
Sbjct: 788 VAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCN 847

Query: 701 DYW 703
           DYW
Sbjct: 848 DYW 850



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 178/343 (51%), Gaps = 12/343 (3%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           R A+   +++  +G   + S T+ +L+ +CI  R  R  K V + ++    EPD  + N 
Sbjct: 43  RGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNS 102

Query: 171 VLLMHVRCGMMIDARRLFDEM---PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
           ++ ++ + G    A  +F+ M    +R++VS + ++A   ++G  L+A  +F++  E   
Sbjct: 103 LISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGL 162

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMG-FGDNVFVSCALIDMYSKC-GSIEDA 285
                 +  +IRA +  + + VG+      +K G F  +V V C+LIDM+ K   S E+A
Sbjct: 163 VPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENA 222

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
             VFD+MSE   V W  +I      G+  EA+  + +M  SG + D FT S +   C  L
Sbjct: 223 YKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAEL 282

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW---GRIEDARHVFDKMLCKNVISWN 402
            +L   KQ H+  +R G   D+    +LVD Y+K    G ++D R VFD+M   +V+SW 
Sbjct: 283 ENLSLGKQLHSWAIRSGLVDDV--ECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWT 340

Query: 403 ALIAGY-GNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSAC 443
           ALI GY  N     EA+ LF +M+  G + PNH TF +   AC
Sbjct: 341 ALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC 383



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 135/297 (45%), Gaps = 16/297 (5%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           S TF++++++        +GK +H+  ++     +  +  +LI +YSK G    A+ VF+
Sbjct: 62  SVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFE 121

Query: 291 EM---SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
            M    ++  V W+ ++A Y  +G   +A+ ++ E  + G+  + + ++ +IR C+    
Sbjct: 122 TMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDF 181

Query: 348 LEHAKQAHAGLVRHG-FGLDIVANSALVDFYSKW-GRIEDARHVFDKMLCKNVISWNALI 405
           +   +     L++ G F  D+    +L+D + K     E+A  VFDKM   NV++W  +I
Sbjct: 182 VGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMI 241

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR-----SGLSERGWEIFQSMS 460
                 G   EA+  F  M+L+G   +  T  +V SAC+       G     W I   + 
Sbjct: 242 TRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLV 301

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
            D +     M+  C       +G +D+   +       +  + W AL+T    N NL
Sbjct: 302 DDVECSLVDMYAKC-----SADGSVDDCRKVFDRMEDHSVMS-WTALITGYMKNCNL 352



 Score = 83.6 bits (205), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 106/246 (43%), Gaps = 44/246 (17%)

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           ALDL    RD    MD  TFS +++ C R       K  HA L+      D V  ++L+ 
Sbjct: 48  ALDLM--ARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLIS 105

Query: 376 FYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
            YSK G    A  VF+ M     ++V+SW+A++A YGN+GR  +A+++F + L  G+ PN
Sbjct: 106 LYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPN 165

Query: 433 HVTFLAVLSACSRSGLS-------------------------------------ERGWEI 455
              + AV+ ACS S                                        E  +++
Sbjct: 166 DYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKV 225

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F  MS  + +    M   CM     RE +    F  +  + F++ K   +++ +AC    
Sbjct: 226 FDKMSELNVVTWTLMITRCMQMGFPREAI--RFFLDMVLSGFESDKFTLSSVFSACAELE 283

Query: 516 NLELGK 521
           NL LGK
Sbjct: 284 NLSLGK 289


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/623 (36%), Positives = 364/623 (58%), Gaps = 3/623 (0%)

Query: 83  SSLPDTQMKKPSAGIC-SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACI 141
           S L  +Q+K+P+  +  + I  LV    + +A+ L+  +   GGF   + T   ++ AC 
Sbjct: 67  SKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMR-GGGFLPNNFTIPFVLKACA 125

Query: 142 GLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNM 201
               +R   ++ S ++  G++ D++++  +L ++V+C    DA ++FD++P++N+VS   
Sbjct: 126 RKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTA 185

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           II G I SG + EA   F  L E      S +   ++ A A L   + G+ +       G
Sbjct: 186 IITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSG 245

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
            G NVFV+ +L+DMY KCG++E A  +F  M EK  V W+T+I GYA +G  ++ALDL++
Sbjct: 246 MGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFF 305

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
           +M+   +K D +T   ++  C  L +L+    A + + R+ F  + V  +AL+D YSK G
Sbjct: 306 QMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCG 365

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            +  A  +F  M  K+ + WNA++ G   +G  +    LF  +  +G+RP+  TF+ +L 
Sbjct: 366 SVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLC 425

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
            C+  G    G + F +M R   + P   HY CM++LLGR GLL+EA  LI   P K   
Sbjct: 426 GCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNA 485

Query: 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            +W ALL  C+++ +  L +   +KL  +EP    NYV L NIY+ + + +EA ++  T+
Sbjct: 486 VVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTM 545

Query: 562 RRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLL 621
           + + ++ + ACSWIE+    H FL GD+SH  +++IY K+D +  E+   G+VP  + +L
Sbjct: 546 KEQQIQKIRACSWIEIDGIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVL 605

Query: 622 PDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGRE 680
            D++E+E +  L YHSEKLAVAFGLI +     +++V++ R+C DCH+AIKLI+ +T RE
Sbjct: 606 FDIEEEEKEHFLGYHSEKLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKRE 665

Query: 681 IVVRDASRFHHFKDGMCSCGDYW 703
           I++RD +RFH F DG CSC DYW
Sbjct: 666 IIIRDTNRFHTFIDGSCSCRDYW 688



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 109/422 (25%), Positives = 191/422 (45%), Gaps = 64/422 (15%)

Query: 241 SAGLELISVGKQLHSCALKMGFGD-----NVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
           S GL   +  K +H+  L++         N+ + CAL       GS   ++ VF ++ E 
Sbjct: 23  SNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCAL-----DFGSTNYSKLVFSQVKEP 77

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
               WNT+I G       ++A+ LY  MR  G   ++FT   +++ C R   +    + H
Sbjct: 78  NIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIH 137

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
           + LV+ G+  D+   ++L+  Y K    +DA  VFD +  KNV+SW A+I GY + G   
Sbjct: 138 SLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFR 197

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSG-----------LSERGW--EIFQSMS-R 461
           EA+  F+++L  G++P+  + + VL+AC+R G           +S+ G    +F + S  
Sbjct: 198 EAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLL 257

Query: 462 DHKIK----PRA------------MHYACMIELLGREGLLDEAFAL---IRGAPFKTTKN 502
           D  +K     RA            + ++ MI+     GL  +A  L   ++    K    
Sbjct: 258 DMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCY 317

Query: 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV---LLNIYNSSGKLKEAAEVIR 559
               +L+AC   G L+LG +A+  +     E LSN V+   L+++Y+  G + +A E+  
Sbjct: 318 TMVGVLSACATLGALDLGIWASSLMD--RNEFLSNPVLGTALIDMYSKCGSVTQAWEIFT 375

Query: 560 TLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKT 619
            ++RK  R++     + +    H                + V  +   + KHG  P+E T
Sbjct: 376 AMKRKD-RVVWNAMMVGLSMNGHA---------------KAVFSLFSLVEKHGIRPDENT 419

Query: 620 LL 621
            +
Sbjct: 420 FI 421


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/613 (36%), Positives = 359/613 (58%), Gaps = 34/613 (5%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G    S T+  L+ +C    + +E +++   +L  GF+ DLY+   ++ M+V+ G + DA
Sbjct: 98  GLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDA 157

Query: 185 RR-------------------------------LFDEMPERNLVSCNMIIAGMIDSGDYL 213
           ++                               +FDE+P +++VS N  I+G  ++G+Y 
Sbjct: 158 QKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYK 217

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA  LF  + +        T  T++ A A    I +G+Q+HS     GFG N+ +  ALI
Sbjct: 218 EALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALI 277

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           D+YSKCG +E A G+F  +S K  + WNT+I GY      +EAL L+ +M  SG K +  
Sbjct: 278 DLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDV 337

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN--SALVDFYSKWGRIEDARHVFD 391
           T   I+  C  L +++  +  H  + +   G+   ++  ++L+D Y+K G IE A+ VFD
Sbjct: 338 TMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFD 397

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
            ML +++ SWNA+I G+  HGR   A ++F +M  NG+ P+ +TF+ +LSACS SG+ + 
Sbjct: 398 SMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDL 457

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
           G  IF+SM+RD+K+ P+  HY CMI+L G  GL  EA  +I     +    +W +LL AC
Sbjct: 458 GRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKAC 517

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           +++GN+ELG+  A+ L  +EPE   +YV+L NIY ++ +  E A+    L  KG++ +P 
Sbjct: 518 KMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPG 577

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQR 630
           CS IE+    H F+ GD+ H + +EIY  ++ M + + + G+VP+   +L +++E+ ++ 
Sbjct: 578 CSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEG 637

Query: 631 VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFH 690
            L +HSEKLA+AFGLI+T   T L IV++ R+C +CH A KLI+ +  REI+ RD +RFH
Sbjct: 638 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFH 697

Query: 691 HFKDGMCSCGDYW 703
           HF+DG CSC DYW
Sbjct: 698 HFRDGECSCNDYW 710



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 137/290 (47%), Gaps = 36/290 (12%)

Query: 253 LHSCALKMGFGDNVFVSCALID---MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           +H+  +K G  +  +    L++   +      +  A  VFD + E   + WNT+  G+AL
Sbjct: 21  IHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTMFRGHAL 80

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
                 AL LY  M   G+  + +TF  +++ C +  + +  +Q H  +++ GF LD+  
Sbjct: 81  SSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYI 140

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE-------------- 415
           +++L+  Y + GR+EDA+ V DK   ++V+S+ ALI GY + G  E              
Sbjct: 141 HTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDV 200

Query: 416 -----------------EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
                            EA+ELF++M+   +RP+  T + VLSAC++SG  E G ++  S
Sbjct: 201 VSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQV-HS 259

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
              DH           +I+L  + G L+ A  L +G   K   + W  L+
Sbjct: 260 WINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVIS-WNTLI 308


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/573 (36%), Positives = 351/573 (61%), Gaps = 2/573 (0%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y +++ +C+  RS+   +++   +L +G  PD  +  +++ ++  CG++  ARRLFD MP
Sbjct: 65  YTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGMP 124

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           +RN+   N++I      G +  A  L+  + +   +  + T+   ++A A L  +  G++
Sbjct: 125 KRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALLDLETGRE 184

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H   L   +G+++FV   L+DMY+KCG ++DA+ VFD +  + +V WN++IA Y  +G 
Sbjct: 185 VHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIAAYGQNGR 244

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
             EAL L  +M  +GV     T    I      A+L   ++ H    R GF       ++
Sbjct: 245 PMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDRQDKLKTS 304

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRP 431
           LVD Y+K G ++ AR +F++++ + ++SWNA+I GYG HG  +EA++LF +M +   + P
Sbjct: 305 LVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTP 364

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           +++TF+ VLSAC+  G+ +   E F  M   + IKP   H+ C++++LG  G  +EA+ L
Sbjct: 365 DNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDL 424

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           I+G P +    +W ALL  C+++ N+ELG+ A +KL  +EPE   NYV+L NIY  SGK 
Sbjct: 425 IKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNIYAQSGKW 484

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
           ++AA V + +  +GL+ +  CSWIE+K + H FL GD SH ++ EIY +++R+   +S  
Sbjct: 485 EKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERLEGLMSDA 544

Query: 612 GYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           GY+P+   +  DV + E+R ++  HSE+LA+AFGLI+T   T L + ++ R+C DCH  I
Sbjct: 545 GYMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVCEDCHVVI 604

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           KLI+ +  REI++RD +R+HHF +G CSC DYW
Sbjct: 605 KLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/620 (35%), Positives = 360/620 (58%), Gaps = 8/620 (1%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D    K S    S I   V+N +  EA E F  ++  G      +T+ ++I +C  L+ +
Sbjct: 262 DNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGA-KPTHATFASVIKSCASLKEL 320

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE-RNLVSCNMIIAG 205
             V+ +    L +G   +  +   +++   +C  + DA  LF  M   +++VS   +I+G
Sbjct: 321 GLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISG 380

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
            + +GD  +A  LF  +  E       T++T++     + +     ++H+  +K  +  +
Sbjct: 381 YLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFI----SEIHAEVIKTNYEKS 436

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
             V  AL+D + K G+I DA  VF+ +  K  + W+ ++AGYA  G +EEA  +++++  
Sbjct: 437 SSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTR 496

Query: 326 SGVKMDHFTFSMIIRICTR-LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
            G+K + FTF  II  CT   AS+E  KQ HA  ++      +  +S+LV  Y+K G IE
Sbjct: 497 EGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIE 556

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            A  +F +   ++++SWN++I+GY  HG+ ++A+E+FE+M    +  + +TF+ V+SAC+
Sbjct: 557 SAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACA 616

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
            +GL  +G   F  M  DH I P   HY+CMI+L  R G+L +A  +I G PF     +W
Sbjct: 617 HAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVW 676

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
             +L A RV+ N+ELGK AAEK+  +EP+  + YV+L NIY ++G   E   V + + ++
Sbjct: 677 RIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKR 736

Query: 565 GLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV 624
            ++  P  SWIEVK + + FL+GD SH  +  IY K+  +   +   GY P+   +  D+
Sbjct: 737 RVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLRDVGYQPDTNYVFHDI 796

Query: 625 -DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVV 683
            DEQ++ +LS+HSE+LA+AFGLI T    PLQIV++ R+C DCH+ IKL+++V  R IVV
Sbjct: 797 EDEQKETILSHHSERLAIAFGLIATLPEIPLQIVKNLRVCGDCHSFIKLVSLVEKRYIVV 856

Query: 684 RDASRFHHFKDGMCSCGDYW 703
           RD++RFHHFK G+CSCGDYW
Sbjct: 857 RDSNRFHHFKGGLCSCGDYW 876



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 241/467 (51%), Gaps = 49/467 (10%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N+   +  ELF +++ EG +     T   +I+A     ++    ++ + ++  GFE +  
Sbjct: 181 NRFNDQVWELFCLMQVEG-YRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERL 239

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N ++ M  + GM+ DAR +FD M  ++ VS N +IAG + +G  LEAF  F ++    
Sbjct: 240 VCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAG 299

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
           +     TFA++I++ A L+ + + + LH   LK G   N  V  AL+   +KC  I+DA 
Sbjct: 300 AKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAF 359

Query: 287 GVFDEM-SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
            +F  M   ++ V W  +I+GY  +G +++A++L+  MR  GVK +HFT+S I+      
Sbjct: 360 SLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTIL------ 413

Query: 346 ASLEHA---KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
            +++HA    + HA +++  +       +AL+D + K G I DA  VF+ +  K+VI+W+
Sbjct: 414 -TVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWS 472

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           A++AGY   G  EEA ++F Q+   G++PN  TF ++++AC+    S    + F +    
Sbjct: 473 AMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHA---- 528

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
           + IK R  +  C+                             ++L+T     GN+E    
Sbjct: 529 YAIKLRLNNALCVS----------------------------SSLVTLYAKRGNIE---- 556

Query: 523 AAEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
           +A +++  + E+ L ++  +++ Y   G+ K+A EV   ++++ L +
Sbjct: 557 SAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEV 603



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 133/488 (27%), Positives = 234/488 (47%), Gaps = 56/488 (11%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +EAL LF  L +  G    S T   ++S C G  +    ++V    +  G    L + N 
Sbjct: 84  QEALHLFVSL-YRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNS 142

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ M+ + G + D RR+FDEM +R++VS N ++ G   +    + + LF  +  E     
Sbjct: 143 LVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPD 202

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             T +T+I A A    +++G Q+H+  +K+GF     V  +LI M SK G + DA+ VFD
Sbjct: 203 YYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFD 262

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            M  K +V WN++IAG+ ++G   EA + +  M+ +G K  H TF+ +I+ C  L  L  
Sbjct: 263 NMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGL 322

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-CKNVISWNALIAGYG 409
            +  H   ++ G   +    +AL+   +K   I+DA  +F  M   ++V+SW A+I+GY 
Sbjct: 323 VRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYL 382

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            +G  ++AV LF  M   G++PNH T+  +L+      +SE   E+ ++           
Sbjct: 383 QNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEIHAEVIKT----------- 431

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
                                      ++ + ++  ALL A    GN+      A K++ 
Sbjct: 432 --------------------------NYEKSSSVGTALLDAFVKIGNIS----DAVKVFE 461

Query: 530 M-EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR--------MLPACSW----IE 576
           + E + +  +  +L  Y  +G+ +EAA++   L R+G++        ++ AC+     +E
Sbjct: 462 LIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVE 521

Query: 577 VKKQPHVF 584
             KQ H +
Sbjct: 522 QGKQFHAY 529



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 198/380 (52%), Gaps = 6/380 (1%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A++LFD+ P R+L   N ++          EA  LF+ L+       S T + ++   AG
Sbjct: 55  AQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAG 114

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
               +VG+Q+H   +K G   ++ V  +L+DMY+K G++ D + VFDEM ++  V WN++
Sbjct: 115 SFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSL 174

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           + GY+ + ++++  +L+  M+  G + D++T S +I       ++    Q HA +V+ GF
Sbjct: 175 LTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGF 234

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             + +  ++L+   SK G + DAR VFD M  K+ +SWN++IAG+  +G+  EA E F  
Sbjct: 235 ETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNN 294

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGW-EIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           M L G +P H TF +V+ +C  + L E G   +    +    +         ++  L + 
Sbjct: 295 MQLAGAKPTHATFASVIKSC--ASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKC 352

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVV 540
             +D+AF+L        +   W A+++    NG+ +  +  F+  +  G++P   + Y  
Sbjct: 353 KEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFT-YST 411

Query: 541 LLNIYNSSGKLKEAAEVIRT 560
           +L + ++    +  AEVI+T
Sbjct: 412 ILTVQHAVFISEIHAEVIKT 431


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/692 (34%), Positives = 370/692 (53%), Gaps = 78/692 (11%)

Query: 84  SLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGL 143
           S+PD  +   S    S I  L   K + +++ +F  + F  G    +     L   C  L
Sbjct: 75  SIPDPTVYSFS----SLIYALTKAKLFSQSIGVFSRM-FSHGLIPDTHVLPNLFKVCAEL 129

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSC---- 199
            + +  K++      +G + D +++  +  M++RCG M DAR++FD M E+++V+C    
Sbjct: 130 SAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALL 189

Query: 200 -------------------------------NMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
                                          N I++G   SG + EA ++F  +      
Sbjct: 190 CGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKM-HHLGF 248

Query: 229 CGSRTFATMIRASAG-LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
           C  +   + +  S G  E +++G+Q+H   +K G   +  V  A++DMY K G +     
Sbjct: 249 CPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIK 308

Query: 288 VFDEMS-----------------------------------EKTTVGWNTIIAGYALHGY 312
           +FDE                                     E   V W +IIAG A +G 
Sbjct: 309 LFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGK 368

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
             EAL+L+ EM+ +GVK +  T   ++  C  +A+L H +  H   VR     D+   SA
Sbjct: 369 DIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSA 428

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D Y+K GRI+ ++ VF+ M  KN++ WN+L+ GY  HG+ +E + +FE ++   ++P+
Sbjct: 429 LIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPD 488

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            ++F ++LSAC + GL++ GW+ F  MS ++ IKPR  HY+CM+ LLGR G L EA+ LI
Sbjct: 489 FISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLI 548

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
           +  PF+    +W ALL +CR+  N++L + AA+KL+ +EPE    YV++ NIY + G   
Sbjct: 549 KEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWT 608

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
           E   +   +   GL+  P CSWI+VK + +  L+ D+SH Q  +I  K+D +  E+ K G
Sbjct: 609 EVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQIDQITEKMDEISEEMRKSG 668

Query: 613 YVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           + P     L DV+EQEQ  + + HSEKLAV FGL+NT D TPLQ++++ RIC DCH  IK
Sbjct: 669 HRPNLDFALQDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIK 728

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            I+   GREI +RD +RFHHFKDG+CSCGD+W
Sbjct: 729 FISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 113/517 (21%), Positives = 206/517 (39%), Gaps = 117/517 (22%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           +L +G + D Y+  +++  +       DA  +   +P+  + S + +I  +  +  + ++
Sbjct: 41  ILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQS 100

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
             +F  ++       +     + +  A L     GKQ+H  A   G   + FV  +L  M
Sbjct: 101 IGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHM 160

Query: 276 YSKCGSIEDAQGVFDEMSEK-----------------------------------TTVGW 300
           Y +CG + DA+ VFD MSEK                                     V W
Sbjct: 161 YMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSW 220

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           N I++G+   GY +EA+ ++ +M   G   D  T S ++       +L   +Q H  +++
Sbjct: 221 NGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIK 280

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM------LCK------------------ 396
            G   D    SA++D Y K G +     +FD+       +C                   
Sbjct: 281 QGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEM 340

Query: 397 -----------NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
                      NV+SW ++IAG   +G+  EA+ELF +M + G++PN VT  ++L AC  
Sbjct: 341 FGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGN 400

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM-- 503
                 G        R H +    +  A +I++  + G +  +  +    P   TKN+  
Sbjct: 401 IAALGHGRSTHGFAVRVHLLDDVHVGSA-LIDMYAKCGRIKMSQIVFNMMP---TKNLVC 456

Query: 504 -----------------------------------WAALLTACRVNGNLELG----KFAA 524
                                              + +LL+AC   G  + G       +
Sbjct: 457 WNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNMMS 516

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           E+ YG++P +L +Y  ++N+   +GKL+EA ++I+ +
Sbjct: 517 EE-YGIKP-RLEHYSCMVNLLGRAGKLQEAYDLIKEI 551



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 102/208 (49%)

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           Q H+  LK G  ++ ++S  LI  YS      DA  +   + + T   ++++I       
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAK 95

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
              +++ ++  M   G+  D      + ++C  L++ +  KQ H      G  +D     
Sbjct: 96  LFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQG 155

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           +L   Y + GR+ DAR VFD+M  K+V++ +AL+ GY   G  EE V +  +M  +G+ P
Sbjct: 156 SLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEP 215

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSM 459
           N V++  +LS  +RSG  +    +FQ M
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVIMFQKM 243


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 249/606 (41%), Positives = 361/606 (59%), Gaps = 23/606 (3%)

Query: 113 ALELFE-ILEFEGGFDVGSSTYDALISAC---IGLRSIREVKRVFSYMLSTGFEPDLYMR 168
            L LFE + E   G D    T   +I+AC   +GL     V+++  +++  G +    + 
Sbjct: 125 TLRLFEEVRELRLGLD--GFTLSGVITACGDDVGL-----VRQLHCFVVVCGHDCYASVN 177

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
           N VL  + R G + +ARR+F EM E   R+ VS N +I       + +EA  LF ++   
Sbjct: 178 NAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRR 237

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC-GSIED 284
                  T A+++ A   ++ +  G+Q H   +K GF  N  V   LID+YSKC GS+ +
Sbjct: 238 GLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVE 297

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALH-GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
            + VF+E++    V WNT+I+G++L+   SE+ L  + EM+ +G + D  +F  +   C+
Sbjct: 298 CRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACS 357

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVA-NSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
            L+S    KQ HA  ++     + V+ N+ALV  YSK G + DAR VFD M   N +S N
Sbjct: 358 NLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLN 417

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           ++IAGY  HG   E++ LFE ML   + PN +TF+AVLSAC  +G  E G + F  M   
Sbjct: 418 SMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKER 477

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
             I+P A HY+CMI+LLGR G L EA  +I   PF      WA LL ACR +GN+EL   
Sbjct: 478 FCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVK 537

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPH 582
           AA +   +EP   + YV+L N+Y S+ + +EAA V R +R +G++  P CSWIE+ K+ H
Sbjct: 538 AANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVH 597

Query: 583 VFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEK-TLLPD----VDEQEQRVLSYHSE 637
           VF++ D SH   KEI+  + +M+ ++ + GYVP+ +  L+ D     DE+E+R+L YHSE
Sbjct: 598 VFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLL-YHSE 656

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLAVAFGLI+T +  P+ +V++ RIC DCHNA+KLI+ +TGREI VRD  RFH FK+G C
Sbjct: 657 KLAVAFGLISTEEGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHC 716

Query: 698 SCGDYW 703
           SC DYW
Sbjct: 717 SCRDYW 722



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 115/245 (46%), Gaps = 36/245 (14%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG---- 287
           +TF  +++A      +  GK LH+   K     + ++S     +YSKCGS+ +AQ     
Sbjct: 10  QTFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHL 69

Query: 288 ---------------------------VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY 320
                                      VFDE+ +   V +NT+IA YA  G     L L+
Sbjct: 70  TQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLF 129

Query: 321 YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380
            E+R+  + +D FT S +I  C     L   +Q H  +V  G       N+A++  YS+ 
Sbjct: 130 EEVRELRLGLDGFTLSGVITACGDDVGL--VRQLHCFVVVCGHDCYASVNNAVLACYSRK 187

Query: 381 GRIEDARHVFDKM---LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           G + +AR VF +M     ++ +SWNA+I   G H  G EAV LF +M+  G++ +  T  
Sbjct: 188 GFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMA 247

Query: 438 AVLSA 442
           +VL+A
Sbjct: 248 SVLTA 252



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 93/222 (41%), Gaps = 25/222 (11%)

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYE--MRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
           K  +    +I G  LH        LY++  +  S    +HFT      + ++  SL H  
Sbjct: 17  KACIAQRDLITGKILHA-------LYFKSLIPPSTYLSNHFTL-----LYSKCGSL-HNA 63

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           Q    L ++    ++ + + L++ Y+K   I  AR VFD++   +++S+N LIA Y + G
Sbjct: 64  QTSFHLTQYP---NVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRG 120

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS-GLSERGWEIFQSMSRDHKIKPRAMH 471
                + LFE++    +  +  T   V++AC    GL  +          D         
Sbjct: 121 ECGPTLRLFEEVRELRLGLDGFTLSGVITACGDDVGLVRQLHCFVVVCGHDCYASVNNAV 180

Query: 472 YACMIELLGREGLLDEAFALIR--GAPFKTTKNMWAALLTAC 511
            AC      R+G L EA  + R  G      +  W A++ AC
Sbjct: 181 LAC----YSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVAC 218


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/613 (36%), Positives = 360/613 (58%), Gaps = 34/613 (5%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G    S T+  L+ +C  L+  +E +++  ++L  G+E DLY+   ++ M+V+ G   DA
Sbjct: 98  GLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDA 157

Query: 185 -------------------------------RRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
                                          +++FDE+P +++VS N II+G  D+G+  
Sbjct: 158 HKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNK 217

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA  LF ++ +        T  T++ A A    I +G+Q+HS     G G N+ +  ALI
Sbjct: 218 EALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALI 277

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           D+YSKCG +E A G+F  +S K  + WNT+I GY      +EAL L+ EM  SG   +  
Sbjct: 278 DLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDV 337

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN--SALVDFYSKWGRIEDARHVFD 391
           T   I+  C +L +++  +  H  + +   G+   ++  ++L+D Y+K G IE A  VF+
Sbjct: 338 TMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 397

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
            M  + + + NA+I G+  HGR   A ++F +M  NG+ P+ +TF+ +LSACS SG+ + 
Sbjct: 398 SMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDL 457

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
           G  IF+SM++++KI P+  HY CMI+LLG  GL  EA  +I     +    +W +LL AC
Sbjct: 458 GRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKAC 517

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           +++GN+ELG+  A+KL  +EPE   +YV+L NIY ++G+  E A +   L  KG++ +P 
Sbjct: 518 KMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGMKKVPG 577

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQR 630
           CS IE+    H F+ GD+ H + +EIY  ++ M + + + G+VP+   +L +++E+ +Q 
Sbjct: 578 CSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQG 637

Query: 631 VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFH 690
            L +HSEKLA+AFGLI+T   T L IV++ R+C +CH A KLI+ +  REI+ RD +RFH
Sbjct: 638 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFH 697

Query: 691 HFKDGMCSCGDYW 703
           HF+DG+CSC DYW
Sbjct: 698 HFRDGVCSCNDYW 710



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 132/276 (47%), Gaps = 35/276 (12%)

Query: 253 LHSCALKMGFGDNVFVSCALID---MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           +H+  +K G  +  +    L++   +      +  A  VF+ + E   + WNT+  G+AL
Sbjct: 21  IHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTMFRGHAL 80

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
                 A+ LY  M   G+  + +TF  +++ C +L   +  +Q H  +++ G+ LD+  
Sbjct: 81  SSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLYV 140

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL------------------------- 404
           +++L+  Y K GR +DA  VFD    ++V+S+ AL                         
Sbjct: 141 HTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKDV 200

Query: 405 ------IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
                 I+GY + G  +EA++LF++M+   ++P+  T + V+SAC++SG  + G ++  S
Sbjct: 201 VSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQV-HS 259

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
              DH +         +I+L  + G ++ A  L +G
Sbjct: 260 WIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQG 295


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/646 (35%), Positives = 355/646 (54%), Gaps = 67/646 (10%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G +    T   ++++    R +   K+V S+++  G   ++ + N +L M+ +CG  + A
Sbjct: 141 GIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMA 200

Query: 185 RRLFD-------------------------------EMPERNLVSCNMIIAGMIDSGDYL 213
           + +FD                               +M ER++V+ N +I+G    G  L
Sbjct: 201 KVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDL 260

Query: 214 EAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCAL 272
            A  +F  +  +      R T A+++ A A LE + +G+Q+HS  +  GF  +  V  AL
Sbjct: 261 RALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNAL 320

Query: 273 IDMYSKCGSIE---------------------------------DAQGVFDEMSEKTTVG 299
           I MYS+CG +E                                 +A+ +FD + ++  V 
Sbjct: 321 ISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVA 380

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           W  +I GY  HG   EA++L+  M     + + +T + ++ + + LASL H KQ H   V
Sbjct: 381 WTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAV 440

Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-KNVISWNALIAGYGNHGRGEEAV 418
           + G    +  ++AL+  Y+K G I  A   FD + C ++ +SW ++I     HG  EEA+
Sbjct: 441 KSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEAL 500

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478
           ELFE ML+ G+RP+H+T++ V SAC+ +GL  +G + F  M    KI P   HYACM++L
Sbjct: 501 ELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDL 560

Query: 479 LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538
            GR GLL EA   I   P +     W +LL+ACRV  N++LGK AAE+L  +EPE    Y
Sbjct: 561 FGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAY 620

Query: 539 VVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIY 598
             L N+Y++ GK +EAA++ ++++   ++     SWIEVK + H F   D  H Q  EIY
Sbjct: 621 SALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIY 680

Query: 599 RKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIV 657
             + ++  EI K GYVP+  ++L D++E+ ++++L +HSEKLA+AFGLI+T D T L+I+
Sbjct: 681 ITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIM 740

Query: 658 QSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++ R+C DCH AIK I+ + GREI+VRD +RFHHFKDG CSC DYW
Sbjct: 741 KNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/458 (26%), Positives = 206/458 (44%), Gaps = 75/458 (16%)

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N VL  + + G M  +   FD +P+R+ VS   +I G  + G Y +A  +  ++  E  +
Sbjct: 84  NTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIE 143

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               T   ++ + A    +  GK++HS  +K+G   NV VS +L++MY+KCG    A+ V
Sbjct: 144 PSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVV 203

Query: 289 FD-------------------------------EMSEKTTVGWNTIIAGYALHGYSEEAL 317
           FD                               +M+E+  V WN++I+GY   GY   AL
Sbjct: 204 FDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRAL 263

Query: 318 DLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
           D++ +M RDS +  D FT + ++  C  L  L   +Q H+ +V  GF +  +  +AL+  
Sbjct: 264 DMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISM 323

Query: 377 YSKWGRIEDAR---------------------------------HVFDKMLCKNVISWNA 403
           YS+ G +E AR                                 ++FD +  ++V++W A
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTA 383

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           +I GY  HG   EA+ LF  M+    RPN  T  A+LS  S       G +I  S  +  
Sbjct: 384 MIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSG 443

Query: 464 KIKPRAMHYACMIELLGREGLL---DEAFALIRGAPFKTTKNMWAALLTACRVNGNLE-- 518
           +I   ++  A +I +  + G +     AF LIR      +   W +++ A   +G+ E  
Sbjct: 444 EIYSVSVSNA-LITMYAKAGSITSASRAFDLIRCERDTVS---WTSMIIALAQHGHAEEA 499

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
           L  F    + G+ P+ ++ YV + +    +G + +  +
Sbjct: 500 LELFETMLMEGLRPDHIT-YVGVFSACTHAGLVNQGRQ 536



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 121/416 (29%), Positives = 201/416 (48%), Gaps = 55/416 (13%)

Query: 75  IYTEELKESSL-PDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTY 133
           ++++ L++S L PD          C+ +EKL + ++    +          GFD+     
Sbjct: 265 MFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHI-------VTTGFDISGIVL 317

Query: 134 DALISA---CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLM--HVRCGMMIDARRLF 188
           +ALIS    C G+ + R        ++      DL +     L+  +++ G M +A+ +F
Sbjct: 318 NALISMYSRCGGVETARR-------LIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIF 370

Query: 189 DEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS 248
           D + +R++V+   +I G    G Y EA  LF  +  E     S T A M+  ++ L  + 
Sbjct: 371 DSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLG 430

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGY 307
            GKQ+H  A+K G   +V VS ALI MY+K GSI  A   FD +  E+ TV W ++I   
Sbjct: 431 HGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIAL 490

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG-LD 366
           A HG++EEAL+L+  M   G++ DH T+  +   CT           HAGLV  G    D
Sbjct: 491 AQHGHAEEALELFETMLMEGLRPDHITYVGVFSACT-----------HAGLVNQGRQYFD 539

Query: 367 IVAN-----------SALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAG---YGNH 411
           ++ +           + +VD + + G +++A+   +KM +  +V++W +L++    Y N 
Sbjct: 540 MMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNI 599

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVL-SACSRSGLSERGWEIFQSMSRDHKIK 466
             G+ A E    +LL        + LA L SAC   G  E   +I +SM +D ++K
Sbjct: 600 DLGKVAAERL--LLLEPENSGAYSALANLYSAC---GKWEEAAKIRKSM-KDGRVK 649



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 152/310 (49%), Gaps = 13/310 (4%)

Query: 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL 317
           L+  F  N  +S      Y+K G ++ +   FD + ++ +V W T+I GY   G   +A+
Sbjct: 77  LRTAFSWNTVLSA-----YAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAI 131

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
            +  EM   G++   FT + ++        LE  K+ H+ +V+ G   ++  +++L++ Y
Sbjct: 132 RIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMY 191

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           +K G    A+ VFD+M+ K++ SWNA+IA +   G+ + A+  FEQM       + VT+ 
Sbjct: 192 AKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQM----AERDIVTWN 247

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL---LGREGLLDEAFALIRG 494
           +++S  ++ G   R  ++F  M RD  + P     A ++     L +  + ++  + I  
Sbjct: 248 SMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVT 307

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
             F  +  +  AL++     G +E  +   E+  G +  K+  +  LL+ Y   G + EA
Sbjct: 308 TGFDISGIVLNALISMYSRCGGVETARRLIEQ-RGTKDLKIEGFTALLDGYIKLGDMNEA 366

Query: 555 AEVIRTLRRK 564
             +  +L+ +
Sbjct: 367 KNIFDSLKDR 376



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/131 (21%), Positives = 67/131 (51%), Gaps = 6/131 (4%)

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL-VRHGFGLDIVANSALVDFYSKWGRIE 384
           SG+    +  + ++ + ++     HA++    + +R  F  + V ++     Y+K G ++
Sbjct: 43  SGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSA-----YAKRGDMD 97

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            +   FD++  ++ +SW  +I GY N G+  +A+ +  +M+  G+ P+  T   VL++ +
Sbjct: 98  SSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVA 157

Query: 445 RSGLSERGWEI 455
            +   E G ++
Sbjct: 158 ATRCLETGKKV 168



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 47/100 (47%), Gaps = 8/100 (8%)

Query: 333 FTFSMIIRICTRLASLE--------HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
            + S ++ +CT L             A+  H  +++ G    +   + L++ YSK G   
Sbjct: 7   LSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYAL 66

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            AR +FD+M  +   SWN +++ Y   G  + + E F+++
Sbjct: 67  HARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRL 106


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/609 (36%), Positives = 360/609 (59%), Gaps = 40/609 (6%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR------ 185
           T+  L+ +C   ++ RE +++  ++L  G++ DLY+   ++ M+V+ G + DAR      
Sbjct: 90  TFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQS 149

Query: 186 -------------------------RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
                                    ++FDE+P +++VS N +I+G  ++G+  EA  LF 
Sbjct: 150 SHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFK 209

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           ++ +        T  +++ A A    I +G+Q+HS     GFG N+ +  ALID+Y KCG
Sbjct: 210 EMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCG 269

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            +E A G+F+ +S K  + WNT+I GY      +EAL L+ EM  SG   +  T   I+ 
Sbjct: 270 EVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILP 329

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVAN-----SALVDFYSKWGRIEDARHVFDKMLC 395
            C  L ++E  +  H  + +    L  VAN     ++L+D Y+K G IE A+ VFD +L 
Sbjct: 330 ACAHLGAIEIGRWIHVYINKR---LKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILN 386

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           +++ SWNA+I G+  HGR   A ++F +M  N + P+ +TF+ +LSACS SG+ + G  I
Sbjct: 387 RSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHI 446

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F+SM  D+KI P+  HY CMI+LLG  GL  EA  +I     +    +W +LL AC+++G
Sbjct: 447 FRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHG 506

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575
           N+ELG+  A+ L  +EP+   +YV+L NIY ++G+  E A++   L  KG++ +P CS I
Sbjct: 507 NVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSI 566

Query: 576 EVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSY 634
           E+    H F+ GD+ H + +EIY  ++ M + + + G+VP+   +L +++E+ ++  L +
Sbjct: 567 EIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRH 626

Query: 635 HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKD 694
           HSEKLA+AFGLI+T   T L IV++ R+C +CH A KLI+ +  REI+ RD +RFHHF+D
Sbjct: 627 HSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRD 686

Query: 695 GMCSCGDYW 703
           G+CSC DYW
Sbjct: 687 GVCSCNDYW 695



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 168/381 (44%), Gaps = 81/381 (21%)

Query: 251 KQLHSCALKMGFGDNVFVSCALID---MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           + +H+  +K G  +  +    LI+   +      +  A  VF+ + E   + WNT+  G+
Sbjct: 4   RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 63

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           AL      AL LY  M   G+  + +TF  +++ C +  +    +Q H  +++ G+ LD+
Sbjct: 64  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDL 123

Query: 368 VANSALVDFYSKWGRIEDARHVFDK-------------------------------MLCK 396
             +++L+  Y + GR+EDAR VFD+                               +  K
Sbjct: 124 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK 183

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           +V+SWNA+I+GY   G  +EA+ELF++M+   +RP+  T ++V+SAC++S   E G ++ 
Sbjct: 184 DVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV- 242

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
            S   DH           +I+L  + G ++ A  L  G  +K              ++ N
Sbjct: 243 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDV------------ISWN 290

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG--------LRM 568
             +G +    LY                       KEA  + + + R G        L +
Sbjct: 291 TLIGGYTHMNLY-----------------------KEALLLFQEMLRSGESPNDVTMLSI 327

Query: 569 LPACSW---IEVKKQPHVFLS 586
           LPAC+    IE+ +  HV+++
Sbjct: 328 LPACAHLGAIEIGRWIHVYIN 348


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/594 (37%), Positives = 350/594 (58%), Gaps = 3/594 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +AL LF  +   G +     T+ +++SA      +   +++ S +   GF+ ++++   +
Sbjct: 228 QALSLFNQMRCSGPYP-NQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTAL 286

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +C  M  A R+FD+MPERNLVS N +I G   +  Y  A  +F D+  E +   +
Sbjct: 287 VDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPN 346

Query: 232 R-TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             + ++++ A A +  ++ G+Q+H   +K G     +V  +L+DMY KC   ++   +F 
Sbjct: 347 EVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQ 406

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            + ++  V WN ++ G+  +   EEA + ++ MR  G+  D  +FS ++     LA+L  
Sbjct: 407 CVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQ 466

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
               H  +++ G+  ++    +L+  Y+K G + DA  VF+ +   NVISW A+I+ Y  
Sbjct: 467 GTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQL 526

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           HG   + +ELFE ML  G+ P+HVTF+ VLSACS +G  E G   F SM + H + P   
Sbjct: 527 HGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPE 586

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HYACM++LLGR G LDEA   I   P K T ++W ALL ACR  GNL++G+ AAE+L+ M
Sbjct: 587 HYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEM 646

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           EP    NYV+L N+   SG+L+EA EV R +   G+R  P CSWI+VK    VF + D+S
Sbjct: 647 EPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRS 706

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTS 649
           H  + EIY+ ++++   + K GYV E + +   ++E +E++ L YHSEKLA+AFGL+   
Sbjct: 707 HSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLP 766

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             +P++I ++ R C  CH  +KL + +  REI+VRD +RFH F DG CSCGDYW
Sbjct: 767 IDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 820



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 217/436 (49%), Gaps = 10/436 (2%)

Query: 134 DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193
           + L++  I  RS++   ++ + ++   +    ++ N ++ ++ +CG +  A  LF     
Sbjct: 146 NHLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHH 205

Query: 194 --RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
             + +V+   +I  +     +L+A  LF  +          TF++++ ASA   ++  G+
Sbjct: 206 HFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQ 265

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           QLHS   K GF  N+FV  AL+DMY+KC  +  A  VFD+M E+  V WN++I G+  + 
Sbjct: 266 QLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNN 325

Query: 312 YSEEALDLYYE-MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF-GLDIVA 369
             + A+ ++ + +R+  V  +  + S ++  C  +  L   +Q H  +V++G   L  V 
Sbjct: 326 LYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVM 385

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
           NS L+D Y K    ++   +F  +  ++V++WN L+ G+  + + EEA   F  M   G+
Sbjct: 386 NS-LMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGI 444

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
            P+  +F  VL + +      +G  I   + +   +K   +    +I +  + G L +A+
Sbjct: 445 LPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCI-LGSLITMYAKCGSLVDAY 503

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNG--NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
            +  G       + W A+++A +++G  N  +  F      G+EP  ++ +V +L+  + 
Sbjct: 504 QVFEGIEDHNVIS-WTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVT-FVCVLSACSH 561

Query: 548 SGKLKEAAEVIRTLRR 563
           +G+++E      ++++
Sbjct: 562 TGRVEEGLAHFNSMKK 577



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 178/368 (48%), Gaps = 13/368 (3%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I     N  Y  A+ +F+ +  E        +  +++SAC  +  +   ++V   ++ 
Sbjct: 316 SMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVK 375

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G  P  Y+ N ++ M+ +C    +  +LF  + +R++V+ N+++ G + +  + EA   
Sbjct: 376 YGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNY 435

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F  +  E       +F+T++ +SA L  +  G  +H   +K+G+  N+ +  +LI MY+K
Sbjct: 436 FWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAK 495

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CGS+ DA  VF+ + +   + W  +I+ Y LHG + + ++L+  M   G++  H TF  +
Sbjct: 496 CGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCV 555

Query: 339 IRICTRLASLEHAKQAHAGLVR--HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
           +  C+    +E    AH   ++  H         + +VD   + G +++A+   + M  K
Sbjct: 556 LSACSHTGRVEEG-LAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMK 614

Query: 397 NVIS-WNALIAG---YGNHGRGEEAVE-LFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
              S W AL+     YGN   G EA E LFE    N   P +   LA  + C+RSG  E 
Sbjct: 615 PTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYN---PGNYVLLA--NMCTRSGRLEE 669

Query: 452 GWEIFQSM 459
             E+ + M
Sbjct: 670 ANEVRRLM 677


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/599 (37%), Positives = 356/599 (59%), Gaps = 31/599 (5%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N  ++EAL+LF  +   G F   + T+ ++  AC+GL +    K V    L + +E DLY
Sbjct: 218 NDCFKEALKLFSQMRMVG-FKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLY 276

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   +L ++ + G + DAR  F+E+P+++++  + +IA    S    EA  +F  + +  
Sbjct: 277 VGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQAL 336

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 TFA++++A A +E +++G Q+H   +K+G   +VFVS AL+D+Y+KCG +E++ 
Sbjct: 337 VLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSM 396

Query: 287 GVFDEMSEKTTVG-WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
            +F E   +  V  WNT+I G+   G  E+AL L+  M +  V+    T+S  +R C  L
Sbjct: 397 XLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASL 456

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           A+LE   Q H+  V+  F  DIV  +AL+D Y+K G I+DAR VFD M  ++ +SWNA+I
Sbjct: 457 AALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMI 516

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
           +GY  HG                             AC+ +GL ++G   F SM +DH I
Sbjct: 517 SGYSMHGL----------------------------ACANAGLLDQGQAYFTSMIQDHGI 548

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
           +P   HY CM+ LLGR G LD+A  LI   PF+ +  +W ALL AC ++ ++ELG+ +A+
Sbjct: 549 EPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQ 608

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
            +  MEP+  + +V+L N+Y ++ +    A V + ++RKG++  P  SWIE +   H F 
Sbjct: 609 HVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFT 668

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFG 644
            GD SH + + I   ++ + ++  K GY+P    +L DV DE+++R+L  HSE+LA++FG
Sbjct: 669 VGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFG 728

Query: 645 LINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +I T   +P++I+++ RIC DCH AIK I+ V  REIVVRD +RFHHF++G+CSCGDYW
Sbjct: 729 IIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 787



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 111/318 (34%), Positives = 173/318 (54%)

Query: 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186
           +  S  Y   +  CI        K +   +L  G   DL+  N +L M+V+   + DA +
Sbjct: 35  EFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASK 94

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           LFDEMPERN +S   +I G  +S  +LEA  LF+ L  E  +     F T+++    ++ 
Sbjct: 95  LFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDC 154

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
             +G  +H+C  K+G   N FV  ALID YS CG ++ A+ VFD +  K  V W  ++  
Sbjct: 155 GELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTC 214

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           +A +   +EAL L+ +MR  G K ++FTF+ + + C  L + +  K  H   ++  + LD
Sbjct: 215 FAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELD 274

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +    AL+D Y+K G I+DAR  F+++  K+VI W+ +IA Y    + +EAVE+F QM  
Sbjct: 275 LYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQ 334

Query: 427 NGMRPNHVTFLAVLSACS 444
             + PN  TF +VL AC+
Sbjct: 335 ALVLPNQFTFASVLQACA 352



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 127/487 (26%), Positives = 248/487 (50%), Gaps = 15/487 (3%)

Query: 83  SSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIG 142
           S L D   ++ +    + I+    + R+ EA+ELF  L  E G ++    +  ++   + 
Sbjct: 93  SKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHRE-GHELNPFVFTTILKLLVS 151

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           +        + + +   G E + ++   ++  +  CG +  AR +FD +  +++VS   +
Sbjct: 152 MDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGM 211

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           +    ++  + EA  LF  +        + TFA++ +A  GLE   VGK +H CALK  +
Sbjct: 212 VTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRY 271

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             +++V  AL+D+Y+K G I+DA+  F+E+ +K  + W+ +IA YA    S+EA++++++
Sbjct: 272 ELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQ 331

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           MR + V  + FTF+ +++ C  +  L    Q H  +++ G   D+  ++AL+D Y+K GR
Sbjct: 332 MRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGR 391

Query: 383 IEDARHVFDKMLCKN-VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
           +E++  +F +   +N V  WN +I G+   G GE+A+ LF  ML   ++   VT+ + L 
Sbjct: 392 MENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALR 451

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           AC+     E G +I  S++         +    +I++  + G + +A  L+     K  +
Sbjct: 452 ACASLAALEPGLQI-HSLTVKTTFDKDIVVTNALIDMYAKCGSIKDA-RLVFDLMNKQDE 509

Query: 502 NMWAALLT-------ACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKL 551
             W A+++       AC   G L+ G+     +   +G+EP  + +Y  ++ +    G L
Sbjct: 510 VSWNAMISGYSMHGLACANAGLLDQGQAYFTSMIQDHGIEP-CIEHYTCMVWLLGRGGHL 568

Query: 552 KEAAEVI 558
            +A ++I
Sbjct: 569 DKAVKLI 575



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 119/217 (54%)

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
           S+  S  +A  ++     +  S GK LH   LK G   ++F    L++MY K   + DA 
Sbjct: 34  SEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDAS 93

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +FDEM E+ T+ + T+I GYA      EA++L+  +   G +++ F F+ I+++   + 
Sbjct: 94  KLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMD 153

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
             E     HA + + G   +    +AL+D YS  GR++ AR VFD +L K+++SW  ++ 
Sbjct: 154 CGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVT 213

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
            +  +   +EA++LF QM + G +PN+ TF +V  AC
Sbjct: 214 CFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKAC 250



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 103/241 (42%), Gaps = 8/241 (3%)

Query: 301 NTIIAGYALHGYSEEALDLYYEM--RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
           N  +  ++  G+S ++  L  E     S  + +   ++  ++ C +       K  H  +
Sbjct: 5   NNFLIRFSRRGFSVQSAKLTQEFVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEI 64

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
           ++ G  LD+ A + L++ Y K   + DA  +FD+M  +N IS+  LI GY    R  EA+
Sbjct: 65  LKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAI 124

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR-DHKIKPRAMHYACMIE 477
           ELF ++   G   N   F  +L         E GW I   + +  H  +  A     +I+
Sbjct: 125 ELFVRLHREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGH--ESNAFVGTALID 182

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKL 535
                G +D A  +  G  +K   + W  ++T    N   +  L  F+  ++ G +P   
Sbjct: 183 AYSVCGRVDVAREVFDGILYKDMVS-WTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNF 241

Query: 536 S 536
           +
Sbjct: 242 T 242


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/616 (36%), Positives = 361/616 (58%), Gaps = 3/616 (0%)

Query: 90  MKKPSAGICSQ-IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIRE 148
           +KKP   + S  I  L    +  E+++LF ++   G       T  +L+SA     +++ 
Sbjct: 375 IKKPDIVVWSALITCLDQQGQSEESIKLFHLMRL-GDTLPNQYTICSLLSAATNTGNLQY 433

Query: 149 VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
            + + + +   GFE D+ + N ++ M+++ G + D  +L++ M +R+L+S N  ++G+ D
Sbjct: 434 GQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHD 493

Query: 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
            G Y     +F  + EE       TF +++ + + L  +  G+Q+H+  +K    DN FV
Sbjct: 494 CGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFV 553

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
             ALIDMY+KC  +EDA   F+ +S +    W  II  YA     E+AL+ + +M+  GV
Sbjct: 554 CTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGV 613

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
           K + FT +  +  C+ LASLE  +Q H+ + + G   D+   SALVD Y+K G +E+A  
Sbjct: 614 KPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEA 673

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           +F+ ++ ++ I+WN +I GY  +G+G +A+  F  ML  G+ P+ VTF  +LSACS  GL
Sbjct: 674 LFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGL 733

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
            E G E F SM RD  I P   H ACM+++LGR G  DE    I+         +W  +L
Sbjct: 734 VEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVL 793

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
            A +++ NL LG+ AA KL+ ++PE+ S+Y++L NI+ + G+  +   V   +  KG++ 
Sbjct: 794 GASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKK 853

Query: 569 LPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE 628
            P CSW+E   Q H F+S D SH Q +EI+ K+D +  E++   YVP+ + +L +V E E
Sbjct: 854 EPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETE 913

Query: 629 QR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDAS 687
           ++  L +HSE+LA+ F LI+TS    ++I ++ RIC DCH+ +K I+ +T +EIVVRD  
Sbjct: 914 KKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVR 973

Query: 688 RFHHFKDGMCSCGDYW 703
           RFHHFK+G CSC D+W
Sbjct: 974 RFHHFKNGACSCNDFW 989



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 180/344 (52%), Gaps = 1/344 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I+ LV      +++ LF+ ++ EG       T    + AC    ++   K++ +     G
Sbjct: 185 IQGLVAEGFANDSIYLFQEMQNEGIMP-NEFTLATGLKACSLCMALDLGKQMHAQAFKLG 243

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              DL++ + ++ ++ +CG +  A ++F  MPE+N V+ N+++ G    GD      LF 
Sbjct: 244 LLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFC 303

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            + E    C   T  T+++  A  + +  G+ +HS  +K G+  N F+ C L+DMYSKCG
Sbjct: 304 SMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCG 363

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
              DA GVF  + +   V W+ +I      G SEE++ L++ MR      + +T   ++ 
Sbjct: 364 LAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLS 423

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
             T   +L++ +  HA + ++GF  D+  ++ALV  Y K G + D   +++ M+ +++IS
Sbjct: 424 AATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLIS 483

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           WNA ++G  + G  +  + +F  ML  G  PN  TF+++L +CS
Sbjct: 484 WNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 169/323 (52%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y +++  C   RS+   K +   ++     PD ++   ++ ++ +C     AR +  +MP
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           +R++VS   +I G++  G   ++  LF ++  E       T AT ++A +    + +GKQ
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H+ A K+G   ++FV  AL+D+Y+KCG IE A  +F  M E+  V WN ++ GYA  G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
               L L+  M +  VK + FT + +++ C    +L+  +  H+ +++ G+  +      
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           LVD YSK G   DA  VF  +   +++ W+ALI      G+ EE+++LF  M L    PN
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPN 414

Query: 433 HVTFLAVLSACSRSGLSERGWEI 455
             T  ++LSA + +G  + G  I
Sbjct: 415 QYTICSLLSAATNTGNLQYGQSI 437


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/610 (37%), Positives = 362/610 (59%), Gaps = 6/610 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + +  L  N R  EA+ LF  +  EG     + T  +++  C+ L        +  Y + 
Sbjct: 139 AMLSGLCRNARAAEAVGLFGRMVGEG-VAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVK 197

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G + +L++ N ++ ++ + GM+ +A+ +F  M  R+LV+ N II+G    G    A  +
Sbjct: 198 HGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKM 257

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG-DNVFVSCALIDMYS 277
           F  +          T  ++  A A        K LH   ++ G+  D++    A++DMY+
Sbjct: 258 FQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYA 317

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFS 336
           K  +IE AQ +FD M  + +V WNT+I GY  +G + EA++ Y  M +  G+K    TF 
Sbjct: 318 KLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFV 377

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            ++   + L +L+   + HA  ++ G  +D+   + L+D Y+K G++ +A  +F+KM  +
Sbjct: 378 SVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRR 437

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           +   WNA+I+G G HG G EA+ LF +M   G++P+HVTF+++L+ACS +GL ++G   F
Sbjct: 438 STGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFF 497

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
             M   + I P A HYACM ++LGR G LDEAF  I+  P K    +W ALL ACR++GN
Sbjct: 498 DVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGN 557

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
           +E+GK A++ L+ ++PE +  YV++ N+Y   GK     EV   +RR+ L+  P  S IE
Sbjct: 558 VEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIE 617

Query: 577 VKKQPHVFLSGDQS--HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLS 633
           VK+  +VF SG+Q+  H Q +EI  ++  ++ +I   GYV +   +L DV D++++ +L+
Sbjct: 618 VKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILN 677

Query: 634 YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
            HSE+LA+AFG+INT   TPL I ++ R+C DCHNA K I+ +T REI+VRD++RFHHFK
Sbjct: 678 NHSERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFK 737

Query: 694 DGMCSCGDYW 703
           DG CSCGD+W
Sbjct: 738 DGHCSCGDFW 747



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 118/396 (29%), Positives = 205/396 (51%), Gaps = 7/396 (1%)

Query: 163 PDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL 222
           P ++    ++  ++R G + +A ++FDEM ER++ + N +++G+  +    EA  LF  +
Sbjct: 101 PSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRM 160

Query: 223 WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
             E     + T ++++     L    +   +H  A+K G    +FV  ALID+Y K G +
Sbjct: 161 VGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGML 220

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           E+AQ VF  M  +  V WN+II+G    G +  AL ++  MR SGV  D  T   +    
Sbjct: 221 EEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAI 280

Query: 343 TRLASLEHAKQAHAGLVRHGFGL-DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
            +      AK  H  ++R G+ + DI+A +A+VD Y+K   IE A+ +FD M  ++ +SW
Sbjct: 281 AQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSW 340

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLN-GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           N LI GY  +G   EAVE +  M  + G++    TF++VL A S  G  ++G  +  ++S
Sbjct: 341 NTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRM-HALS 399

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN--LE 518
               +        C+I+L  + G L EA  L    P ++T   W A+++   V+G+    
Sbjct: 400 IKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRST-GPWNAIISGLGVHGHGAEA 458

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
           L  F+  +  G++P+ ++ +V LL   + +G + + 
Sbjct: 459 LTLFSRMQQEGIKPDHVT-FVSLLAACSHAGLVDQG 493



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 170/339 (50%), Gaps = 35/339 (10%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGF-GDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           TF ++IRA+      +   QLH+CAL++G    +VF S +L+  Y + G I +A  VFDE
Sbjct: 72  TFPSLIRAAPS---NASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDE 128

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           MSE+    WN +++G   +  + EA+ L+  M   GV  D  T S ++ +C  L     A
Sbjct: 129 MSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLA 188

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
              H   V+HG   ++   +AL+D Y K G +E+A+ VF  M C+++++WN++I+G    
Sbjct: 189 LVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQR 248

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG-----------LSERGWEIFQSMS 460
           G+   A+++F+ M  +G+ P+ +T +++ SA ++ G           +  RGW++     
Sbjct: 249 GQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDV----- 303

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
            D  I   A     ++++  +   ++ A  +    P + + + W  L+T    NG   L 
Sbjct: 304 -DDIIAGNA-----IVDMYAKLSNIEAAQRMFDSMPVQDSVS-WNTLITGYMQNG---LA 353

Query: 521 KFAAEKLYGMEPEK-----LSNYVVLLNIYNSSGKLKEA 554
             A E+   M+  +        +V +L  Y+  G L++ 
Sbjct: 354 NEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQG 392


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/648 (33%), Positives = 372/648 (57%), Gaps = 49/648 (7%)

Query: 101 IEKLVLNKRYREALELF-------EILEFEG-GFDVGSSTYDALISACIGLRSIREVKRV 152
           +E+L    R+ EA+++        E ++  G      +STY  LI  C   R++ E K+V
Sbjct: 50  VERLCRANRFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKV 109

Query: 153 FSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDY 212
             ++ ++GF P + + NR+L M+ +CG ++DAR++FDEMPER++ S N+++ G  + G  
Sbjct: 110 HEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLL 169

Query: 213 LEAFLLFLDLWEEFSDCGSRTFATMIRA-------------------------------- 240
            EA  LF    +E  +  S ++  M+                                  
Sbjct: 170 EEARNLF----DEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSS 225

Query: 241 ----SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
               +A ++ I  GK++H   ++ G   +  +  +L+DMY KCG I++A+ +FD++ +K 
Sbjct: 226 AVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKD 285

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
            V W ++I  Y       E   L+ E+  S  + + +TFS ++  C  L + E  +Q H 
Sbjct: 286 VVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHG 345

Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
            + R GF     A+S+L+D Y+K G IE ARHV D     +++S  +LI GY  +G+ +E
Sbjct: 346 YMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDE 405

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
           A++ F+ +L +G +P+HVTF+ VLSAC+ +GL E+G E F S++  H +   + HY C++
Sbjct: 406 ALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLV 465

Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
           +LL R G  ++  +++   P K +K +WA++L  C   GN++L + AA++L+ +EPE   
Sbjct: 466 DLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPV 525

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKE 596
            YV + NIY ++GK +E  ++ + ++  G+   P  SW E+K++ HVF++ D SH    +
Sbjct: 526 TYVTMANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAADTSHPMYNQ 585

Query: 597 IYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQ 655
           I   +  +  ++ + GYVP    +L DV DEQ++  L YHSEKLAVAF +++T + T ++
Sbjct: 586 IIEFLGELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIK 645

Query: 656 IVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + ++ R C DCH+AIK I+ +T R+I +RD++RFH F++G CSC DYW
Sbjct: 646 VFKNLRSCVDCHSAIKFISKITKRKITIRDSTRFHCFENGQCSCRDYW 693


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/635 (36%), Positives = 358/635 (56%), Gaps = 43/635 (6%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +  L  + R REAL++   ++ +G   + S+TY + ++AC  L S+R  K++ + ++   
Sbjct: 242 VSALSQSGRVREALDMVVDMQSKG-VRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL 300

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              D Y+ + ++ ++ +CG   +A+ +F+ + +RN V+  ++IAG +  G + E+  LF 
Sbjct: 301 PCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFN 360

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC- 279
            +  E         AT+I        + +G+QLHS  LK G    V VS +LI MY+KC 
Sbjct: 361 QMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCD 420

Query: 280 ------------------------------GSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
                                         G+I  A+  FD MS K  + WN ++  Y  
Sbjct: 421 NLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQ 480

Query: 310 HGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
           HG  E+ L +Y  M  +  V+ D  T+  + + C  L + +   Q     V+ G  LD  
Sbjct: 481 HGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTS 540

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             +A++  YSK GRI +AR VFD +  K+++SWNA+I GY  HG G++A+E+F+ +L  G
Sbjct: 541 VANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRG 600

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
            +P++++++AVLS CS SGL + G   F  M R H I P   H++CM++LLGR G L EA
Sbjct: 601 AKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEA 660

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
             LI   P K T  +W ALL+AC+++GN EL + AA+ ++ ++     +Y+++  IY  +
Sbjct: 661 KDLIDEMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADA 720

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           GK  ++A++ + +R KG++  P  SW+EV  + HVF + D SH Q   I +K+D +M +I
Sbjct: 721 GKSDDSAQIRKLMRDKGIKKNPGYSWMEVNNKVHVFKADDVSHPQVIAIRKKLDELMEKI 780

Query: 609 SKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHN 668
           ++ GYV  +            R   +HSEKLAVAFGL++   W P+ I+++ RIC DCH 
Sbjct: 781 ARLGYVRTD----------SPRSEIHHSEKLAVAFGLMSLPAWMPIHIMKNLRICGDCHT 830

Query: 669 AIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            IKLI+ VTGRE V+RDA RFHHF  G CSCGDYW
Sbjct: 831 VIKLISSVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 132/527 (25%), Positives = 241/527 (45%), Gaps = 78/527 (14%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           +++Y  +LE F  +   G     + T+   + +C  L       ++   +   G + D  
Sbjct: 115 SQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSD 174

Query: 167 MRNRVLLMHVRCGMMIDARR-------------------------------LFDEMPERN 195
           +   ++ M VRCG +  A R                               LFD MPER+
Sbjct: 175 VAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERD 234

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
           +VS NM+++ +  SG   EA  + +D+  +     S T+ + + A A L  +  GKQLH+
Sbjct: 235 VVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHA 294

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
             ++     + +V+ AL+++Y+KCG  ++A+GVF+ + ++  V W  +IAG+  HG   E
Sbjct: 295 QVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTE 354

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           +++L+ +MR   + +D F  + +I  C     L   +Q H+  ++ G    +V +++L+ 
Sbjct: 355 SVELFNQMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLIS 414

Query: 376 FYSK---------------------W----------GRIEDARHVFDKMLCKNVISWNAL 404
            Y+K                     W          G I  AR  FD M  KNVI+WNA+
Sbjct: 415 MYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAM 474

Query: 405 IAGYGNHGRGEEAVELFEQMLL-NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           +  Y  HG  E+ + ++  ML    +RP+ VT++ +   C+  G ++ G +I     +  
Sbjct: 475 LGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVG 534

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM--WAALLTACRVNGNLELGK 521
            I   ++  A +I +  + G + EA  +     F   K++  W A++T    +G   +GK
Sbjct: 535 LILDTSVANA-VITMYSKCGRILEARKVF---DFLNVKDIVSWNAMITGYSQHG---MGK 587

Query: 522 FAAEKL-----YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
            A E        G +P+ +S YV +L+  + SG ++E       ++R
Sbjct: 588 QAIEIFDDILKRGAKPDYIS-YVAVLSGCSHSGLVQEGKSYFDMMKR 633



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 215/451 (47%), Gaps = 46/451 (10%)

Query: 134 DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193
           + L+ A +   ++ + +R+   +L+    P++   N +L  +V+ G + DA  LF  MP 
Sbjct: 43  NTLLHAYLSCGALPDARRL---LLTDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPA 99

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF-SDCGSRTFATMIRASAGLELISVGKQ 252
           R++ S N +++G   S  YL +   F+ +     S   + TFA  +++   L   S+  Q
Sbjct: 100 RDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQ 159

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ-------------------------G 287
           L     K G  D+  V+ AL+DM+ +CG+++ A                          G
Sbjct: 160 LLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYG 219

Query: 288 V------FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           V      FD M E+  V WN +++  +  G   EALD+  +M+  GV++D  T++  +  
Sbjct: 220 VDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTA 279

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C RL+SL   KQ HA ++R+   +D    SALV+ Y+K G  ++A+ VF+ +  +N ++W
Sbjct: 280 CARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAW 339

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA-CSRSGLSERGWEIFQSMS 460
             LIAG+  HG   E+VELF QM    M  +      ++S  CSR  L   G ++     
Sbjct: 340 TVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLC-LGRQLHSLCL 398

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM--WAALLTACRVNGNLE 518
           +  +I+   +  + +I +  +   L  A ++ R   F   K++  W +++TA    GN+ 
Sbjct: 399 KSGQIQAVVVSNS-LISMYAKCDNLQSAESIFR---FMNEKDIVSWTSMITAHSQVGNIA 454

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549
             +   E   GM  + +  +  +L  Y   G
Sbjct: 455 KAR---EFFDGMSTKNVITWNAMLGAYIQHG 482



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 125/323 (38%), Gaps = 67/323 (20%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ---- 286
           ++ FA  +R+      ++  + LH   + +G    VF+   L+  Y  CG++ DA+    
Sbjct: 4   TQAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLL 63

Query: 287 ----------------------------GVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
                                        +F  M  +    WNT+++GY        +L+
Sbjct: 64  TDIAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLE 123

Query: 319 LYYEMRDSG-VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
            +  M  SG    + FTF+  ++ C  L     A Q    + + G   D    +ALVD +
Sbjct: 124 SFVSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMF 183

Query: 378 SKWGR-------------------------------IEDARHVFDKMLCKNVISWNALIA 406
            + G                                ++ A  +FD M  ++V+SWN +++
Sbjct: 184 VRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVS 243

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK-I 465
                GR  EA+++   M   G+R +  T+ + L+AC+R      G ++   + R+   I
Sbjct: 244 ALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCI 303

Query: 466 KPRAMHYACMIELLGREGLLDEA 488
            P     + ++EL  + G   EA
Sbjct: 304 DPYVA--SALVELYAKCGCFKEA 324



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 103/209 (49%), Gaps = 16/209 (7%)

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           +++ ++ +++ Y K GR+ DA  +F +M  ++V SWN L++GY    +   ++E F  M 
Sbjct: 70  NVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMH 129

Query: 426 LNG-MRPNHVTFLAVLSACSRSGLSERGWEI-FQSMSRDHKIKPRAMHYACMIELLGREG 483
            +G   PN  TF   + +C    L ER   +    M +    +  +   A ++++  R G
Sbjct: 130 RSGDSSPNAFTFAYAMKSCG--ALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCG 187

Query: 484 LLDEA---FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNYV 539
            +D A   F  I+        +M    +    V+  LEL        +   PE+ + ++ 
Sbjct: 188 TVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALEL--------FDSMPERDVVSWN 239

Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
           ++++  + SG+++EA +++  ++ KG+R+
Sbjct: 240 MMVSALSQSGRVREALDMVVDMQSKGVRL 268


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/572 (37%), Positives = 345/572 (60%), Gaps = 22/572 (3%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           YD  I+ C+  R++RE ++V + M++ G+ P LY+  R+++M+ RCG + DAR + D MP
Sbjct: 38  YDDAITECVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMP 97

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           ERN+VS   +I+G   +               E  D     F  M+RA      I   KQ
Sbjct: 98  ERNVVSWTAMISGYSQN---------------ERPDQAWELFIMMLRAG-----IHQVKQ 137

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H+ A+K  F  ++FV  +L+DMY+K  +I++A+ VFD +  +  V +  I++GY   G 
Sbjct: 138 VHAFAVKTNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGL 197

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            EEALDL+  + + G++ +  TF+ ++   + L+S+++ KQ H  ++R      +   ++
Sbjct: 198 DEEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNS 257

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D YSK G++  +R VFD M  ++V+SWNA++ GYG HG   E V+LF  M  + ++P+
Sbjct: 258 LIDMYSKCGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMC-DEVKPD 316

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            VT LAVLS  S  GL + G ++F  + ++        HY C+I+LLGR G L +A  LI
Sbjct: 317 SVTLLAVLSGYSHGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLI 376

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
              PF+ T+ +W +LL ACRV+ N+ +G+F A+KL  +EPE   NYV+L NIY ++G  K
Sbjct: 377 EKMPFQPTRAIWGSLLGACRVHTNVHVGEFVAQKLLDIEPENAGNYVILSNIYAAAGMWK 436

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
           +   V + + +K +   P  SW+ + K  H F S ++ H + ++I  K+  + + I   G
Sbjct: 437 DVFRVRKLMLKKTVIKEPGRSWMILDKVIHTFHSCERFHPRKEDINAKIKEIYVAIKAAG 496

Query: 613 YVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           +VP+   +L DV DEQ++R+L  HSEKLA+ FGL++T     +Q++++ RIC DCHN  K
Sbjct: 497 FVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCHNFAK 556

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++ V GREI +RD +RFH   +G C+CGDYW
Sbjct: 557 FVSKVYGREISLRDKNRFHLITEGACTCGDYW 588



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 97/202 (48%), Gaps = 6/202 (2%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL+LF +L +  G      T+ AL++A  GL S+   K+V   +L       + ++N +
Sbjct: 200 EALDLFRLL-YNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSL 258

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG ++ +RR+FD MPER++VS N ++ G    G   E   LF  + +E      
Sbjct: 259 IDMYSKCGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCDEVKPDSV 318

Query: 232 RTFATMIRASAGLELISVGKQL--HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              A +   S G  L+  G  +  H    +    +     C +ID+  + G ++ A  + 
Sbjct: 319 TLLAVLSGYSHG-GLVDEGLDMFDHIVKEQSTLLNTEHYGC-VIDLLGRSGQLQKALNLI 376

Query: 290 DEMS-EKTTVGWNTIIAGYALH 310
           ++M  + T   W +++    +H
Sbjct: 377 EKMPFQPTRAIWGSLLGACRVH 398


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/594 (38%), Positives = 346/594 (58%), Gaps = 2/594 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EALE F  +   G     S+T  +++ A   + +    + V ++    G     ++   +
Sbjct: 203 EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGL 262

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + ++ +CG M  AR LFD M   +LV+ N +I+G   +G    +  LF +L        S
Sbjct: 263 ISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSS 322

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T   +I   +      +   LH+  +K G   N  VS AL  +Y +   ++ A+  FD 
Sbjct: 323 STLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDA 382

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M EKT   WN +I+GYA +G +E A+ L+ +M+   V+ +  T S  +  C +L +L   
Sbjct: 383 MPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGALSLG 442

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K  H  +      L++   +AL+D Y K G I +AR +FD M  KNV+SWN +I+GYG H
Sbjct: 443 KWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLH 502

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G+G EA++L++ M+   + P   TFL+VL ACS  GL + G  +F+SM+ D+ I P   H
Sbjct: 503 GQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEH 562

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGM 530
             CM++LLGR G L EAF LI   P       +W ALL AC V+ + +L K A++KL+ +
Sbjct: 563 CTCMVDLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFEL 622

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           EPE    YV+L N+Y S  +  EAA V +  + + L   P C+ IE+  +PHVF++GD++
Sbjct: 623 EPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRA 682

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTS 649
           H Q+  IY  ++++  ++ + GY P+ +  L DV+E+E + ++  HSEKLA+AFGL+NT 
Sbjct: 683 HPQSDAIYLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTE 742

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             T ++I+++ R+C DCHNA K+I+ VT R IVVRDASRFHHF+DG+CSCGDYW
Sbjct: 743 PGTEIRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 120/459 (26%), Positives = 216/459 (47%), Gaps = 50/459 (10%)

Query: 149 VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
           ++ + +  +++GF  D ++ + +  ++       DAR++FD +P  + V  N ++AG+  
Sbjct: 142 LRPLHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLSG 201

Query: 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
           S + LEAF+          D  S T A+++ A+A +   ++G+ +H+   K G   +  V
Sbjct: 202 S-EALEAFVRMAGAGSVRPD--STTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHV 258

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
              LI +Y+KCG +E A+ +FD M     V +N +I+GY+++G    +++L+ E+   G+
Sbjct: 259 VTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGL 318

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
           +    T   +I + +       A   HA +V+ G   +   ++AL   Y ++  ++ AR 
Sbjct: 319 RPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARR 378

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG- 447
            FD M  K + SWNA+I+GY  +G  E AV LF+QM    +RPN +T  + LSAC++ G 
Sbjct: 379 AFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQLGA 438

Query: 448 LSERGWE----------------------------------IFQSMSRDHKIKPRAMHYA 473
           LS   W                                   IF SM   + +      + 
Sbjct: 439 LSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVS-----WN 493

Query: 474 CMIELLGREGLLDEAFALIR---GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL--- 527
            MI   G  G   EA  L +    A    T + + ++L AC   G ++ G      +   
Sbjct: 494 VMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSD 553

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           YG+ P  + +   ++++   +G+LKEA E+I    +  +
Sbjct: 554 YGITP-GIEHCTCMVDLLGRAGQLKEAFELISEFPKSAV 591



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 186/415 (44%), Gaps = 59/415 (14%)

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
           S C     +    ASA L      + LH+ A+  GF  + FV+ AL  +Y       DA+
Sbjct: 125 SSCSRGGISPPSAASAAL------RPLHALAVASGFAADNFVASALAKLYFTLSRGNDAR 178

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG-VKMDHFTFSMIIRICTRL 345
            VFD +    TV WNT++AG +      EAL+ +  M  +G V+ D  T + ++     +
Sbjct: 179 KVFDAVPSPDTVLWNTLLAGLS----GSEALEAFVRMAGAGSVRPDSTTLASVLPAAAEV 234

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           A+    +  HA   + G        + L+  Y+K G +E ARH+FD+M   +++++NALI
Sbjct: 235 ANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALI 294

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV-----------LSACSRSGLSERGWE 454
           +GY  +G    +VELF++++  G+RP+  T +A+           L+ C  + + + G +
Sbjct: 295 SGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLD 354

Query: 455 IFQSMS----------RDHKIKPRAM---------HYACMIELLGREGLLDEAFAL---I 492
               +S           D     RA           +  MI    + GL + A AL   +
Sbjct: 355 ANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQM 414

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV--LLNIYNSSGK 550
           +    +      ++ L+AC   G L LGK+   K+   E  +L+ YV+  L+++Y   G 
Sbjct: 415 QALNVRPNPLTISSALSACAQLGALSLGKW-VHKIIANEKLELNVYVMTALIDMYVKCGS 473

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
           + EA  +  ++  K +      SW       +V +SG   H Q  E  +    MM
Sbjct: 474 IAEARCIFDSMDNKNV-----VSW-------NVMISGYGLHGQGAEALKLYKDMM 516


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/583 (36%), Positives = 350/583 (60%), Gaps = 10/583 (1%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           S++   I AC  L  I   K+        G++ D+++ + +++M+  CG + DAR++FDE
Sbjct: 77  SSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDE 136

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF------ATMIRASAGL 244
           +P+R++VS   +I G   +G+ L+A  LF DL  + +D     F       ++I A + +
Sbjct: 137 IPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRV 196

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG--SIEDAQGVFDEMSEKTTVGWNT 302
               + + +HS  +K GF   V V   L+D Y+K G   +  A+ +FD++ +K  V +N+
Sbjct: 197 PAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNS 256

Query: 303 IIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           I++ YA  G S EA +++  + ++  V  +  T S ++   +   +L   K  H  ++R 
Sbjct: 257 IMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRM 316

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           G   D++  ++++D Y K GR+E AR  FD+M  KNV SW A+IAGYG HG   +A+ELF
Sbjct: 317 GLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELF 376

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
             M+ +G+RPN++TF++VL+ACS +GL   GW  F +M     ++P   HY CM++LLGR
Sbjct: 377 PAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGR 436

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
            G L +A+ LI+    K    +W++LL ACR++ N+EL + +  +L+ ++      Y++L
Sbjct: 437 AGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLL 496

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV 601
            +IY  +G+ K+   V   ++ +GL   P  S +E+  + HVFL GD+ H Q ++IY  +
Sbjct: 497 SHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFL 556

Query: 602 DRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSH 660
             +  ++ + GYV    ++  DVDE+E+ + L  HSEKLA+AFG++NT   + + +V++ 
Sbjct: 557 AELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNL 616

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           R+C DCHN IKLI+ +  RE VVRDA RFHHFKDG CSCGDYW
Sbjct: 617 RVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 189/372 (50%), Gaps = 22/372 (5%)

Query: 187 LFDEMPER-NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
           LF+   ++ ++ S N +IA +  SGD  EA L F  + +        +F   I+A + L 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
            I  GKQ H  A   G+  ++FVS ALI MYS CG +EDA+ VFDE+ ++  V W ++I 
Sbjct: 91  DIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIR 150

Query: 306 GYALHGYSEEALDLYYEM------RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           GY L+G + +A+ L+ ++       D  + +D      +I  C+R+ +    +  H+ ++
Sbjct: 151 GYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVI 210

Query: 360 RHGFGLDIVANSALVDFYSKWGR--IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           + GF   +   + L+D Y+K G   +  AR +FD+++ K+ +S+N++++ Y   G   EA
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270

Query: 418 VELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
            E+F +++ N +   N +T   VL A S SG    G  I   + R   ++   +    +I
Sbjct: 271 FEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIR-MGLEDDVIVGTSII 329

Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN----LELGKFAAEKLYGMEP 532
           ++  + G ++ A         K  ++ W A++    ++G+    LEL  F A    G+ P
Sbjct: 330 DMYCKCGRVETARKAFDRMKNKNVRS-WTAMIAGYGMHGHAAKALEL--FPAMIDSGVRP 386

Query: 533 EKLSNYVVLLNI 544
               NY+  +++
Sbjct: 387 ----NYITFVSV 394



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 95/212 (44%), Gaps = 12/212 (5%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA E+F  L         + T   ++ A     ++R  K +   ++  G E D+ +   +
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSI 328

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG +  AR+ FD M  +N+ S   +IAG    G   +A    L+L+    D G 
Sbjct: 329 IDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKA----LELFPAMIDSGV 384

Query: 232 R----TFATMIRA--SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
           R    TF +++ A   AGL  +   +  ++   + G    +     ++D+  + G ++ A
Sbjct: 385 RPNYITFVSVLAACSHAGLH-VEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKA 443

Query: 286 QGVFDEMSEKT-TVGWNTIIAGYALHGYSEEA 316
             +   M  K  ++ W++++A   +H   E A
Sbjct: 444 YDLIQRMKMKPDSIIWSSLLAACRIHKNVELA 475


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/622 (35%), Positives = 363/622 (58%), Gaps = 8/622 (1%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYD--ALISACIGLR 144
           D  M++      + I  L  NK +  ALEL   + F     V  S     ++++      
Sbjct: 153 DKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNF---MQVRPSEVAMVSMVNLFADTA 209

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLL--MHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           ++R  K + +Y++       + +     L  M+ +CG +  AR+LF+ + ++ +VS   +
Sbjct: 210 NMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAM 269

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           IAG I S    E   LF+ + EE       T  ++I        + +GKQLH+  L+ GF
Sbjct: 270 IAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGF 329

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             ++ ++ AL+DMY KC  I +A+ +FD    +  + W  +++ YA     ++A +L+ +
Sbjct: 330 SVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQ 389

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           MR SGV+    T   ++ +C    +L+  K  H+ + +    +D + N+ALVD Y+K G 
Sbjct: 390 MRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGD 449

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           I  A  +F + + +++  WNA+I G+  HG GEEA+++F +M   G++PN +TF+ +L A
Sbjct: 450 INAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHA 509

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
           CS +GL   G ++F+ M     + P+  HY CM++LLGR GLLDEA  +I+  P K    
Sbjct: 510 CSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTI 569

Query: 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           +W AL+ ACR++ N +LG+ AA +L  +EPE     V++ NIY ++ +  +AA V +T++
Sbjct: 570 VWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMK 629

Query: 563 RKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLP 622
             G++  P  S IEV    H FL GDQSH Q + I   +  M  ++++ GYVP+  T+L 
Sbjct: 630 TVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLL 689

Query: 623 DVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREI 681
           ++DE+E+   L+YHSEKLA+AFGLI+T+  TP++IV++ R+C DCH A KL++ + GR I
Sbjct: 690 NIDEEEKETALTYHSEKLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVI 749

Query: 682 VVRDASRFHHFKDGMCSCGDYW 703
           +VRD +RFHHF++G CSCGDYW
Sbjct: 750 IVRDRNRFHHFREGYCSCGDYW 771



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 228/435 (52%), Gaps = 15/435 (3%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +++ AC  +   +  K +  ++L  G + D+++ N ++LM+  C  +  AR +FD+M ER
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELISVG 250
           ++VS +     MI S    + F + L+L  E +    R       +M+   A    + +G
Sbjct: 159 DVVSWST----MIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMG 214

Query: 251 KQLHSCALKMGFGDNVFV--SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           K +H+  ++    +++ V  + AL+DMY+KCG +  A+ +F+ +++KT V W  +IAG  
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 274

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
                EE   L+  M++  +  +  T   +I  C    +L+  KQ HA ++R+GF + + 
Sbjct: 275 RSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLA 334

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             +ALVD Y K   I +AR +FD    ++V+ W A+++ Y      ++A  LF+QM  +G
Sbjct: 335 LATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSG 394

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           +RP  VT +++LS C+ +G  + G  +   + ++ +++   +    ++++  + G ++ A
Sbjct: 395 VRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKE-RVEVDCILNTALVDMYAKCGDINAA 453

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYN 546
             L   A  +    MW A++T   ++G  E  L  FA  +  G++P  ++ ++ LL+  +
Sbjct: 454 GRLFIEAISRDI-CMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDIT-FIGLLHACS 511

Query: 547 SSGKLKEAAEVIRTL 561
            +G + E  ++   +
Sbjct: 512 HAGLVTEGKKLFEKM 526



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 95/194 (48%), Gaps = 10/194 (5%)

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
           +F    +++ C +++  +  K+ H  +++ G   D+   +AL+  Y +   +E AR VFD
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL-----SACSRS 446
           KM+ ++V+SW+ +I     +   + A+EL  +M    +RP+ V  ++++     +A  R 
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRM 213

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           G +   + I  S + +H   P       ++++  + G L  A  L  G   KT  + W A
Sbjct: 214 GKAMHAYVIRNS-NNEHMGVPTT---TALLDMYAKCGHLGLARQLFNGLTQKTVVS-WTA 268

Query: 507 LLTACRVNGNLELG 520
           ++  C  +  LE G
Sbjct: 269 MIAGCIRSNRLEEG 282


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/647 (35%), Positives = 379/647 (58%), Gaps = 12/647 (1%)

Query: 66  LKPRPKPNKIYTEELKESSLP-DTQMKKPSAGICSQIEKLVL-----NKRYREALELFEI 119
           LKP P P +        SSLP D  +  P+    S+   L       N   R  + +F +
Sbjct: 71  LKPSPAPKQPRVSLGIPSSLPFDVGLAFPTIAP-SRFGTLTSFPNSSNDSTRTKVAVF-L 128

Query: 120 LEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG 179
            +      +  S   +L+ A     S+     + + ++ +    D ++ +R++ M+ + G
Sbjct: 129 GKLHNSSLLADSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLG 188

Query: 180 MMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL-LFLDLWEEFS-DCGSRTFATM 237
              DA+RLFDEMP R+LVS N +++G+   G YL A L  F  +  E        T  ++
Sbjct: 189 YDEDAQRLFDEMPNRDLVSWNSLMSGLSGRG-YLGACLNAFCRMRTESGRQPNEVTLLSV 247

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           + A A +  +  GK LH   +K+G      V  +LI+MY K G ++ A  +F+EM  ++ 
Sbjct: 248 VSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSL 307

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           V WN+++  +  +GY+E+ +DL+  M+ +G+  D  T   ++R CT       A+  HA 
Sbjct: 308 VSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAY 367

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           + R GF  DI+  +AL++ Y+K GR+  +  +F+++  ++ I+W A++AGY  H  G EA
Sbjct: 368 IHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREA 427

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           ++LF+ M+  G+  +HVTF  +LSACS SGL E G + F+ MS  ++++PR  HY+CM++
Sbjct: 428 IKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVD 487

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
           LLGR G L++A+ LI+  P + +  +W ALL ACRV GN+ELGK  AE+L  ++P    N
Sbjct: 488 LLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRN 547

Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI 597
           Y++L NIY+++G  + A++V   ++ + L   P CS+IE   + H F+ GDQ H ++ EI
Sbjct: 548 YIMLSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEI 607

Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQI 656
           + K++ ++ +I + G  P+ + +L D+DE+ +  +++ HSEKLA+AFGL+ T    PL I
Sbjct: 608 HTKLEELIRKIXEAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLII 667

Query: 657 VQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++ RIC DCH+  K  +++  R I++RD+ RFHHF DG+CSC DYW
Sbjct: 668 TKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/580 (35%), Positives = 353/580 (60%), Gaps = 1/580 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           GF        + + A + L S    K +    + T ++ + ++   +L M+ +CG + DA
Sbjct: 244 GFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDA 303

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
             +F+ +P  +++  + +I+    S    +AF +FL +   F      + + +++A A +
Sbjct: 304 HAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANI 363

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             + +G+Q+H+ A+K+G+   +FV  AL+DMY+KC ++E++  +F  + +   V WNTII
Sbjct: 364 AFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTII 423

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
            GY   G++E+AL +++EMR + +     TFS ++R C   +S++HA Q H+ + +  F 
Sbjct: 424 VGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFN 483

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D +  ++L+D Y+K G I DA  VF+ ++  +V+SWN++I+ Y  HGR   A+ELF++M
Sbjct: 484 NDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRM 543

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
             + ++ N VTF+++LS C  +GL  +G  +F SM  DH+IKP   HY C++ LLGR G 
Sbjct: 544 NKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGR 603

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L +A   I   P   +  +W ALL++C V+ N+ LG++AAEK+  +EP   + YV+L N+
Sbjct: 604 LTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNM 663

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           Y ++G L E A   +++R  G++     SW+E+K + H F  G   H   + I   ++ +
Sbjct: 664 YAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIINAMLEWL 723

Query: 605 MLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
            L+ S+ GYVP+   +L DVDE+E+ R+L  HSE+LA+A+GL  T    P++I+++ R C
Sbjct: 724 NLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNLRSC 783

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCH   K+I+ +  REI+VRD +RFHHF++G+CSCGDYW
Sbjct: 784 LDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/318 (31%), Positives = 162/318 (50%), Gaps = 2/318 (0%)

Query: 140 CIGLRSIREVKRVFSYMLSTG--FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLV 197
           CI     R  + V + ++  G   + D +  N +L  + + G +  ARRLFD MPERN V
Sbjct: 55  CIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRV 114

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257
           S   ++ G    G++ EA  LF  L  E  +       T+++    ++   +   +H+CA
Sbjct: 115 SFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACA 174

Query: 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL 317
            K+G   N FV  ALID YS CG++  A+ VFD +  K  V W  +++ Y+ +   E AL
Sbjct: 175 CKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYAL 234

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
           + + +MR +G K + F  +  ++    L+S    K  H   V+  +  +     AL+D Y
Sbjct: 235 NTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMY 294

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           +K G IEDA  +F+ +   +VI W+ LI+ Y    + E+A E+F +M+ + + PN  +  
Sbjct: 295 AKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLS 354

Query: 438 AVLSACSRSGLSERGWEI 455
            VL AC+     E G +I
Sbjct: 355 GVLQACANIAFLELGEQI 372



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 175/362 (48%), Gaps = 1/362 (0%)

Query: 85  LPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLR 144
           L D   ++      + ++   L   + EALELF  L+ E G +V       ++   + + 
Sbjct: 104 LFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQRE-GHEVNHFVLTTILKVLVTMD 162

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           +      + +     G + + ++   ++  +  CG +  AR +FD +  ++ V+   +++
Sbjct: 163 APGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVS 222

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
              ++     A   F  +             + ++A+  L    +GK +H C++K  +  
Sbjct: 223 CYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDT 282

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
              V  AL+DMY+KCG IEDA  +F+ +     + W+ +I+ YA    +E+A +++  M 
Sbjct: 283 EPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMM 342

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
            S V  + F+ S +++ C  +A LE  +Q H   ++ G+  ++   +AL+D Y+K   +E
Sbjct: 343 RSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNME 402

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           ++  +F  +   N +SWN +I GY   G  E+A+ +F +M    M    VTF +VL AC+
Sbjct: 403 NSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACA 462

Query: 445 RS 446
            +
Sbjct: 463 NT 464


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/578 (37%), Positives = 352/578 (60%), Gaps = 4/578 (0%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S T  +L+SAC           + SY +  G E +L++ N+++ ++   G + D +++FD
Sbjct: 247 SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFD 306

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
            M  R+L+S N II     +   L A LLF ++          T  ++    + L  I  
Sbjct: 307 RMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRA 366

Query: 250 GKQLHSCALKMG-FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
            + +    L+ G F +++ +  A++ MY+K G ++ A+ VF+ +  K  + WNTII+GYA
Sbjct: 367 CRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYA 426

Query: 309 LHGYSEEALDLYYEMRDSG--VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
            +G++ EA+++Y  M + G  +  +  T+  ++  C++  +L    + H  L+++G  LD
Sbjct: 427 QNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLD 486

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +   ++L D Y K GR++DA  +F ++   N + WN LIA +G HG GE+AV LF++ML 
Sbjct: 487 VFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLD 546

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
            G++P+H+TF+ +LSACS SGL + G   F+ M  D+ I P   HY CM++L GR G L+
Sbjct: 547 EGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLE 606

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546
            A   I+  P +   ++W ALL+ACRV+GN++LGK A+E L+ +EPE +  +V+L N+Y 
Sbjct: 607 IALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYA 666

Query: 547 SSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMML 606
           S+GK +   E+      KGLR  P  S +EV  +  VF +G+Q+H   +E+YR++  +  
Sbjct: 667 SAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHE 726

Query: 607 EISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCD 665
           ++   GYVP+ + +L DV D++++ +L  HSE+LA+AF LI T   T ++I ++ R+C D
Sbjct: 727 KLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAFALITTPAKTTIRIFKNLRVCGD 786

Query: 666 CHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           CH+  K I+ +T REI+VRD++RFHHFK+G+CSCGDYW
Sbjct: 787 CHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 137/490 (27%), Positives = 246/490 (50%), Gaps = 49/490 (10%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E +  F +     G      T+ +++ AC   R++ +  ++    L  GF  D+Y+   +
Sbjct: 135 EVIRCFSLFMLSSGLQPDYRTFPSVLKAC---RNVTDGNKIHCLALKFGFMWDVYVAASL 191

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + ++ R G +++AR LFDEMP R++ S N +I+G   SG+  EA    L L +      S
Sbjct: 192 IHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEA----LTLSDGLRAMDS 247

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T  +++ A       + G  +HS ++K G    +FVS  LID+Y++ GS++D Q VFD 
Sbjct: 248 VTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDR 307

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M  +  + WN+II  Y L+     A+ L+ EMR S ++ D  T   +  I ++L  +   
Sbjct: 308 MYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRAC 367

Query: 352 KQAHAGLVRHGFGL-DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
           +      +R G+ L DI   +A+V  Y+K G ++ AR VF+ +  K+VISWN +I+GY  
Sbjct: 368 RSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQ 427

Query: 411 HGRGEEAVELFEQMLLNG--MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
           +G   EA+E++  M   G  +  N  T+++VL ACS++G   +G ++   + ++  +   
Sbjct: 428 NGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLD 486

Query: 469 AMHYACMIELLGREGLLDEAFAL------IRGAPFKTT-----------------KNM-- 503
                 + ++ G+ G LD+A +L      +   P+ T                  K M  
Sbjct: 487 VFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLD 546

Query: 504 ---------WAALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKL 551
                    +  LL+AC  +G ++ G++  E +   YG+ P  L +Y  ++++Y  +G+L
Sbjct: 547 EGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITP-SLKHYGCMVDLYGRAGQL 605

Query: 552 KEAAEVIRTL 561
           + A   I+++
Sbjct: 606 EIALNFIKSM 615



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/418 (25%), Positives = 215/418 (51%), Gaps = 46/418 (11%)

Query: 173 LMHVRC--GMMIDARRLFDEMPERNLVSCNMIIAGMIDSG---DYLEAFLLFL---DLWE 224
           L+++ C  G +  AR  FD +  R++ + N++I+G   +G   + +  F LF+    L  
Sbjct: 92  LVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQP 151

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
           ++     RTF ++++A      ++ G ++H  ALK GF  +V+V+ +LI +Y + G++ +
Sbjct: 152 DY-----RTFPSVLKACRN---VTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVN 203

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+ +FDEM  +    WN +I+GY   G ++EAL L   +R     MD  T   ++  CT 
Sbjct: 204 ARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLR----AMDSVTVVSLLSACTE 259

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
                     H+  ++HG   ++  ++ L+D Y+++G ++D + VFD+M  +++ISWN++
Sbjct: 260 AGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSI 319

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG-----LSERGWEIFQSM 459
           I  Y  + +   A+ LF++M L+ ++P+ +T +++ S  S+ G      S +G+ + +  
Sbjct: 320 IKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGW 379

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
             +      A     ++ +  + GL+D A A+    P K   + W  +++    NG    
Sbjct: 380 FLEDITIGNA-----VVVMYAKLGLVDSARAVFNWLPNKDVIS-WNTIISGYAQNG---- 429

Query: 520 GKFAAE--KLYGMEPEK-------LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
             FA+E  ++Y +  E+          +V +L   + +G L++  ++   L + GL +
Sbjct: 430 --FASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYL 485



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 153/305 (50%), Gaps = 15/305 (4%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY-YEM 323
           NV +S  L+++Y   G++  A+  FD +  +    WN +I+GY   GYS E +  +   M
Sbjct: 85  NVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFM 144

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
             SG++ D+ TF  +++ C  +       + H   ++ GF  D+   ++L+  Y ++G +
Sbjct: 145 LSSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAV 201

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSA 442
            +AR +FD+M  +++ SWNA+I+GY   G  +EA+ L +     G+R  + VT +++LSA
Sbjct: 202 VNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSD-----GLRAMDSVTVVSLLSA 256

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
           C+ +G   RG  I  S S  H ++        +I+L    G L +   +      +   +
Sbjct: 257 CTEAGDFNRGVTI-HSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLIS 315

Query: 503 MWAALLTACRVNGN--LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560
            W +++ A  +N      +  F   +L  ++P+ L+  + L +I +  G+++    V   
Sbjct: 316 -WNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLT-LISLASILSQLGEIRACRSVQGF 373

Query: 561 LRRKG 565
             RKG
Sbjct: 374 TLRKG 378



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 109/241 (45%), Gaps = 34/241 (14%)

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           + R CT L S   AK  HA LV      ++  ++ LV+ Y   G +  AR+ FD +  ++
Sbjct: 60  LFRYCTNLQS---AKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRD 116

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQ-MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           V +WN +I+GYG  G   E +  F   ML +G++P++ TF +VL AC             
Sbjct: 117 VYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKAC------------- 163

Query: 457 QSMSRDHKIKPRAMHY---------ACMIELLGREGLLDEAFALIRGAPFKTTKNM--WA 505
           ++++  +KI   A+ +         A +I L  R G +  A  L    P   T++M  W 
Sbjct: 164 RNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMP---TRDMGSWN 220

Query: 506 ALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
           A+++    +GN +     ++ L  M+   +   V LL+    +G       +     + G
Sbjct: 221 AMISGYCQSGNAKEALTLSDGLRAMDSVTV---VSLLSACTEAGDFNRGVTIHSYSIKHG 277

Query: 566 L 566
           L
Sbjct: 278 L 278



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 3/203 (1%)

Query: 112 EALELFEILEFEGG-FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           EA+E++ I+E EGG       T+ +++ AC    ++R+  ++   +L  G   D+++   
Sbjct: 433 EAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTS 492

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           +  M+ +CG + DA  LF ++P  N V  N +IA     G   +A +LF ++ +E     
Sbjct: 493 LADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPD 552

Query: 231 SRTFATMIRASAGLELISVGKQ-LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
             TF T++ A +   L+  G+          G   ++     ++D+Y + G +E A    
Sbjct: 553 HITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFI 612

Query: 290 DEMSEKTTVG-WNTIIAGYALHG 311
             M  +     W  +++   +HG
Sbjct: 613 KSMPLQPDASIWGALLSACRVHG 635


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/643 (34%), Positives = 371/643 (57%), Gaps = 24/643 (3%)

Query: 69  RPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDV 128
           RP P   Y  +  +       ++  +A   +++ +L   + ++EAL L+  +    G   
Sbjct: 3   RPHPLFPYANKWLD-------LQNTTASWNARLRELARQRHFQEALNLYCQM-LASGDSP 54

Query: 129 GSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLF 188
            + T+     +C  L       ++  +++ TG EP+ +++  ++ M+ +C  +  AR++F
Sbjct: 55  NAFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVF 114

Query: 189 DE-MPERNLVSC-NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           DE    RNL  C N +IAG   +  + +A LLF  + +E     + T   +I   AG   
Sbjct: 115 DENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIH 174

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           +  G  LH+C+++ G   ++ V   L+ MY +CGS++ A+ +FD M EK  + WN +I+G
Sbjct: 175 LGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISG 234

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           YA +G +   LDLY +M  +G+  D  T   ++  C  L +    ++    +   GFG +
Sbjct: 235 YAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFN 294

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
               +AL++ Y++ G +  AR +FD M  KNVISW A+IAGYG HG+GE AV+LF++M+ 
Sbjct: 295 PFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMIS 354

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
           +   P+   F++VLSACS +GL+E+G   F +M RD+ ++P   HY+C+++LLGR G L+
Sbjct: 355 SDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLE 414

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546
           EA  LI     +    +W ALL AC+++ N+EL + A EK+   EP  +  YV+L NI++
Sbjct: 415 EARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGYYVLLSNIFS 474

Query: 547 SSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMML 606
            +G ++    V   +R + L+  P CS++E + + H+FL+GD++H Q +EIY  +D +  
Sbjct: 475 EAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLED 534

Query: 607 EISKHGYVPEEKTLLPDVDEQEQRV------LSYHSEKLAVAFGLINTSDWTPLQIVQSH 660
            I + G   +        ++QE R       +  HSEKLA+AFGLINT   T + ++++ 
Sbjct: 535 IIKRRGGSND--------NDQESRNEELITGMGVHSEKLAIAFGLINTEPGTEITVIKNL 586

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           R+C DCH  +KL++ +  R++VVRDA+RFHHFK+G+CSC DYW
Sbjct: 587 RVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 629


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 218/608 (35%), Positives = 369/608 (60%), Gaps = 5/608 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I  L+ N    +AL++ + +  EG  ++ S T  +++  C  L  I     +  Y++ 
Sbjct: 243 AMISGLIQNGNAAQALDVLDEMRLEG-INMDSVTVASILPVCAQLGDISTATLIHLYVIK 301

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G E +L++ N ++ M+ + G + DA+++F +M  R++VS N IIA    + D + A   
Sbjct: 302 HGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGF 361

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF-GDNVFVSCALIDMYS 277
           F  +     +    T  ++   +A        + +H   ++ G+  + V +  A++DMY+
Sbjct: 362 FFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYA 421

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFS 336
           K G I+ A  VF+ +  K  V WNT+I+GY  +G + EA+++Y  M +   +K++  T+ 
Sbjct: 422 KLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWV 481

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            I+     + +L+   + H  L++    LD+   + L+D Y K GR+ DA  +F ++  +
Sbjct: 482 SILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRE 541

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           + + WNA+I+ +G HG GE+A++LF +M   G++P+HVTF+++LSACS SGL + G   F
Sbjct: 542 SSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFF 601

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
             M +++ IKP   HY CM++LLGR G L+ A+  I+  P     ++W ALL ACR++GN
Sbjct: 602 HLM-QEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGN 660

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
           +ELGKFA+++L+ ++ E +  YV+L NIY + GK +   +V    R +GL+  P  S IE
Sbjct: 661 IELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIE 720

Query: 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYH 635
           V ++  +F +G+QSH + KEIY ++  +  ++   GY+P+   +L DV+E E + +L+ H
Sbjct: 721 VNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSH 780

Query: 636 SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
           SE+LA+AFG+I+T   + ++I ++ R+C DCHNA K I+ +T REIVVRD+ RFHHFK+G
Sbjct: 781 SERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNG 840

Query: 696 MCSCGDYW 703
           +CSCGDYW
Sbjct: 841 ICSCGDYW 848



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 135/478 (28%), Positives = 256/478 (53%), Gaps = 20/478 (4%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N  +REA++ F  L     F     T+  ++ AC   +++ + +++  ++  
Sbjct: 144 SMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKAC---QTLVDGRKIHCWVFK 200

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF+ D+++   ++ M+ R G +  AR LFD+MP R++ S N +I+G+I +G+  +A  +
Sbjct: 201 LGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDV 260

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
             ++  E  +  S T A+++   A L  IS    +H   +K G    +FVS ALI+MY+K
Sbjct: 261 LDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAK 320

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            G++ DAQ VF +M  +  V WN+IIA Y  +     A   +++M+ +G++ D  T   +
Sbjct: 321 FGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSL 380

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLD-IVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
             I  +    ++++  H  ++R G+ ++ +V  +A++D Y+K G I+ A  VF+ +  K+
Sbjct: 381 ASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKD 440

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQM-LLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           V+SWN LI+GY  +G   EA+E++  M     ++ N  T++++L+A +  G  ++G  I 
Sbjct: 441 VVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRI- 499

Query: 457 QSMSRDHKIKPRAMHY-----ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
                 H IK   +H       C+I+L G+ G L +A  L    P + +   W A+++  
Sbjct: 500 ----HGHLIKTN-LHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVP-RESSVPWNAIISCH 553

Query: 512 RVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
            ++G+ E  L  F   +  G++P+ ++ ++ LL+  + SG + E       ++  G++
Sbjct: 554 GIHGHGEKALKLFREMQDEGVKPDHVT-FISLLSACSHSGLVDEGKWFFHLMQEYGIK 610



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 120/429 (27%), Positives = 223/429 (51%), Gaps = 21/429 (4%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           KR+ + ++ +G     ++  R++ ++   G +  +R  FD++  +++ + N +I+  + +
Sbjct: 93  KRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRN 152

Query: 210 GDYLEAFLLF--LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
           G + EA   F  L L  +F      TF  +++A    + +  G+++H    K+GF  +VF
Sbjct: 153 GHFREAIDCFYQLLLVTKFQ-ADFYTFPPVLKAC---QTLVDGRKIHCWVFKLGFQWDVF 208

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
           V+ +LI MYS+ G +  A+ +FD+M  +    WN +I+G   +G + +ALD+  EMR  G
Sbjct: 209 VAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEG 268

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           + MD  T + I+ +C +L  +  A   H  +++HG   ++  ++AL++ Y+K+G + DA+
Sbjct: 269 INMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQ 328

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF--LAVLSACSR 445
            VF +M  ++V+SWN++IA Y  +     A   F +M LNG+ P+ +T   LA ++A SR
Sbjct: 329 KVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSR 388

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
              + R    F  M R   ++   +  A M ++  + G++D A  +    P K   + W 
Sbjct: 389 DYKNSRSVHGF-IMRRGWLMEAVVIGNAVM-DMYAKLGVIDSAHKVFNLIPVKDVVS-WN 445

Query: 506 ALLTACRVNGNLELGKFAAEKLYGMEPE----KLS--NYVVLLNIYNSSGKLKEAAEVIR 559
            L++    NG   L   A E +Y M  E    KL+   +V +L  Y   G L++   +  
Sbjct: 446 TLISGYTQNG---LASEAIE-VYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHG 501

Query: 560 TLRRKGLRM 568
            L +  L +
Sbjct: 502 HLIKTNLHL 510



 Score =  124 bits (310), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 165/323 (51%), Gaps = 9/323 (2%)

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           + K+LH+  +  G   + F+S  L+++Y+  G +  ++G FD++  K    WN++I+ Y 
Sbjct: 91  LAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYV 150

Query: 309 LHGYSEEALDLYYE-MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
            +G+  EA+D +Y+ +  +  + D +TF  +++ C  L      ++ H  + + GF  D+
Sbjct: 151 RNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIHCWVFKLGFQWDV 207

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              ++L+  YS++G +  AR +FD M  +++ SWNA+I+G   +G   +A+++ ++M L 
Sbjct: 208 FVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLE 267

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G+  + VT  ++L  C++ G       I   + + H ++        +I +  + G L +
Sbjct: 268 GINMDSVTVASILPVCAQLGDISTATLIHLYVIK-HGLEFELFVSNALINMYAKFGNLGD 326

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGN--LELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
           A  + +    +   + W +++ A   N +     G F   +L G+EP+ L+  V L +I 
Sbjct: 327 AQKVFQQMFLRDVVS-WNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLT-LVSLASIA 384

Query: 546 NSSGKLKEAAEVIRTLRRKGLRM 568
             S   K +  V   + R+G  M
Sbjct: 385 AQSRDYKNSRSVHGFIMRRGWLM 407


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/539 (40%), Positives = 339/539 (62%), Gaps = 6/539 (1%)

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
           ++ N ++ M+V+ G++ DA+ +FD+MP+RN+VS   +I+    +    +A    + +  E
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                  T+++++RA  GL  +   +QLH C +K+G   +VFV  ALID+YS+ G +E+A
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENA 117

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
             VFDEM     V W++IIAG+A +   +EAL L+  M+ +G      T + ++R CT L
Sbjct: 118 LRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGL 177

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           A LE  +Q H  +++  +  D++ N+AL+D Y K G +EDA  VF +M+ K+VISW+ +I
Sbjct: 178 ALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMI 235

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
           AG   +G  +EA++LFE M + G++PN+VT + VL ACS +GL E G   F SM     I
Sbjct: 236 AGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGI 295

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
            P   HY CMI+LLGR G L EA  LI     +     W ALL ACRV+ N+++   AA+
Sbjct: 296 DPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAK 355

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
           ++  ++P+    YV+L NIY ++ +  + AEV RT+  +G++  P CSWIEV KQ H F+
Sbjct: 356 QILRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFI 415

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFG 644
            GD+SH Q +EI  ++++++ ++   GYVP+   +L D++ EQ Q  L YHSEKLA+ FG
Sbjct: 416 LGDRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFG 475

Query: 645 LINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           L++      ++I ++ RIC DCH   KL+A +  R IV+RD  R+HHF+DG+CSCGD+W
Sbjct: 476 LMSLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 175/327 (53%), Gaps = 30/327 (9%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +ALE F +L    G      TY +++ AC GL ++R++      ++  G + D+++R+ +
Sbjct: 49  KALE-FLVLMLREGVRPNMFTYSSVLRACDGLFNLRQLH---CCIIKIGLDSDVFVRSAL 104

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + ++ R G + +A R+FDEM   +LV  + IIAG   + D  EA  LF  +         
Sbjct: 105 IDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQ 164

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T  +++RA  GL L+ +G+Q+H   LK  +  ++ ++ AL+DMY KCGS+EDA  VF  
Sbjct: 165 TTLTSVLRACTGLALLELGRQVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVR 222

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M EK  + W+T+IAG A +GYS+EAL L+  M+  G+K ++ T   ++  C+        
Sbjct: 223 MVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACS-------- 274

Query: 352 KQAHAGLVRHG----------FGLDIVAN--SALVDFYSKWGRIEDARHVFDKMLCK-NV 398
              HAGLV  G          FG+D        ++D   + GR+ +A  + ++M C+ + 
Sbjct: 275 ---HAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDA 331

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQML 425
           ++W AL+     H   + A+   +Q+L
Sbjct: 332 VTWRALLNACRVHRNVDVAIHAAKQIL 358


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/585 (38%), Positives = 347/585 (59%), Gaps = 10/585 (1%)

Query: 120 LEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG 179
           L FE    VGS   D  + + +G   I + K+VF Y L    + +  M N ++   + CG
Sbjct: 165 LGFESYLLVGSPLLD--MYSKVG--CISDAKKVF-YGLD---DRNTVMYNTLMGGLLACG 216

Query: 180 MMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIR 239
           M+ DA +LF  M E++ VS + +I G+  +G   EA   F ++  E        F +++ 
Sbjct: 217 MIEDALQLFRGM-EKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGSVLP 275

Query: 240 ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
           A  GL  I+ G+Q+H+C ++    D+++V  ALIDMY KC  +  A+ VFD M +K  V 
Sbjct: 276 ACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVS 335

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           W  ++ GY   G + EA+ ++ +M+ SG+  DH+T    I  C  ++SLE   Q H   +
Sbjct: 336 WTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAI 395

Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVE 419
             G    I  +++LV  Y K G I+D+  +F++M  ++ +SW A+++ Y   GR  EA++
Sbjct: 396 TAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQ 455

Query: 420 LFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479
           LF++M+  G++P+ VT   V+SACSR+GL E+G   F+ M  ++ I P   HY+CMI+L 
Sbjct: 456 LFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLF 515

Query: 480 GREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYV 539
            R G ++EA   I G PF+     W  LL+ACR  GNLE+GK+AAE L  ++P   + Y 
Sbjct: 516 SRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYT 575

Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYR 599
           +L +IY S GK    A++ R ++ K +R  P  SWI+ K + H F + D+S   + +IY 
Sbjct: 576 LLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQIYA 635

Query: 600 KVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQ 658
           K++ +  +I  +GY P+   +  DV+E  + ++L+ HSE+LA+AFGLI      P+++ +
Sbjct: 636 KLEELYQKIIDNGYKPDTSFVHHDVEEAVKIKMLNCHSERLAIAFGLIFVPSGLPIRVGK 695

Query: 659 SHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + R+C DCHNA K I+ VTGREI+VRDA RFH FKDG CSCGD+W
Sbjct: 696 NLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 740



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 193/382 (50%), Gaps = 14/382 (3%)

Query: 90  MKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV 149
           M+K S    + I+ L  N   +EA+E F  ++ E G  +    + +++ AC GL +I + 
Sbjct: 228 MEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIE-GLKMDQYPFGSVLPACGGLGAINDG 286

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           +++ + ++ T  +  +Y+ + ++ M+ +C  +  A+ +FD M ++N+VS   ++ G   +
Sbjct: 287 RQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQT 346

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
           G   EA  +FLD+     D    T    I A A +  +  G Q H  A+  G    + VS
Sbjct: 347 GRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVS 406

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            +L+ +Y KCG I+D+  +F+EM+ +  V W  +++ YA  G + EA+ L+ +M   G+K
Sbjct: 407 NSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLK 466

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN---SALVDFYSKWGRIEDA 386
            D  T + +I  C+R A L    Q +  L+ + +G+ + +N   S ++D +S+ GRIE+A
Sbjct: 467 PDGVTLTGVISACSR-AGLVEKGQRYFELMINEYGI-VPSNGHYSCMIDLFSRSGRIEEA 524

Query: 387 RHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLSACS 444
               + M  + + I W  L++   N G  E      E ++ L+   P   T L+ + A  
Sbjct: 525 MGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYA-- 582

Query: 445 RSGLSERGWEIFQSMSRDHKIK 466
               S+  W+    + R  K K
Sbjct: 583 ----SKGKWDCVAQLRRGMKEK 600


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/603 (36%), Positives = 363/603 (60%), Gaps = 32/603 (5%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           +  L+ ACI L+S+   K++ S + ++G   D ++ N +L ++ + G +  A  LFD MP
Sbjct: 72  FSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQAAVALFDRMP 131

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLF--------------------LDLWEE----FSD 228
            RN++SCN++I   +  G+   A  LF                     ++ EE    FS 
Sbjct: 132 RRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSR 191

Query: 229 CGSRTF-------ATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
               +F        +++R  A L  +  G+Q+H+  +K GF  N+ V C+L  MY K GS
Sbjct: 192 MNELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGS 251

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           + D + V + M + + V WNT+++G A  GY E  LD Y  M+ +G + D  TF  +I  
Sbjct: 252 MHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRPDKITFVSVISS 311

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C+ LA L   KQ HA  V+ G   ++   S+LV  YS+ G ++D+   F +   ++V+ W
Sbjct: 312 CSELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLW 371

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           +++IA YG HG+GEEA++LF +M    +  N +TFL++L ACS  GL ++G  +F  M +
Sbjct: 372 SSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSHCGLKDKGLGLFDMMVK 431

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
            + +K R  HY C+++LLGR G L+EA A+IR  P K    +W  LL+AC+++ N E+ +
Sbjct: 432 KYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSACKIHKNAEIAR 491

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
             A+++  ++P+  ++YV+L NIY+S+ + +  +EV R ++ K ++  P  SW+EVK Q 
Sbjct: 492 RVADEVLRIDPQDSASYVLLANIYSSANRWQNVSEVRRAMKDKMVKKEPGISWVEVKNQV 551

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLA 640
           H F  GD+ H +  EI + ++ +  EI + GYVP+  ++L D+D E+++++L +HSEKLA
Sbjct: 552 HQFHMGDECHPKHVEINQYLEELTSEIKRQGYVPDTSSVLHDMDNEEKEQILRHHSEKLA 611

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AF L+NT +  P++++++ R+C DCH AIK I+ +   EI+VRD+SRFHHFK+G CSCG
Sbjct: 612 IAFALMNTPEGVPIRVMKNLRVCSDCHVAIKYISEIKKLEIIVRDSSRFHHFKNGTCSCG 671

Query: 701 DYW 703
           DYW
Sbjct: 672 DYW 674



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 93/195 (47%), Gaps = 2/195 (1%)

Query: 124 GGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183
            GF     T+ ++IS+C  L  + + K++ +  +  G   ++ + + ++ M+ RCG + D
Sbjct: 296 AGFRPDKITFVSVISSCSELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQD 355

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           + + F E  ER++V  + +IA     G   EA  LF ++ +E       TF +++ A + 
Sbjct: 356 SIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEITFLSLLYACSH 415

Query: 244 LELISVGKQLHSCAL-KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT-TVGWN 301
             L   G  L    + K G    +     L+D+  + G +E+A+ +   M  K   + W 
Sbjct: 416 CGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWK 475

Query: 302 TIIAGYALHGYSEEA 316
           T+++   +H  +E A
Sbjct: 476 TLLSACKIHKNAEIA 490


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/613 (36%), Positives = 363/613 (59%), Gaps = 34/613 (5%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G    S T+  ++ +C   ++ +E +++  ++L  G + DLY+   ++ M+V+ G + DA
Sbjct: 129 GLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDA 188

Query: 185 -------------------------------RRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
                                          ++LFDE+P +++VS N +I+G  ++G+Y 
Sbjct: 189 HKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYK 248

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA  LF D+ +        T  T++ A A    I +G+Q+H      GFG N+ +  ALI
Sbjct: 249 EALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALI 308

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           D+YSKCG +E A G+F+ +  K  + WNT+I GY      +EAL L+ EM  SG   +  
Sbjct: 309 DLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 368

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN--SALVDFYSKWGRIEDARHVFD 391
           T   I+  C  L +++  +  H  + +   G+   ++  ++L+D Y+K G IE A  VF+
Sbjct: 369 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 428

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
            +L K++ SWNA+I G+  HGR + + +LF +M   G++P+ +TF+ +LSACS SG+ + 
Sbjct: 429 SILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDL 488

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
           G  IF++M++D+K+ P+  HY CMI+LLG  GL  EA  +I     +    +W +LL AC
Sbjct: 489 GRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKAC 548

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           +++GN+ELG+  AE L  +EPE   +YV+L NIY S+G+  E A+    L  KG++ +P 
Sbjct: 549 KMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPG 608

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQR 630
           CS IE+    H F+ GD+ H + +EIY  ++ M + + K G+VP+   +L +++E+ ++ 
Sbjct: 609 CSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEG 668

Query: 631 VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFH 690
            L +HSEKLA+AFGLI+T   T L IV++ R+C +CH A KLI+ +  REI+ RD +RFH
Sbjct: 669 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFH 728

Query: 691 HFKDGMCSCGDYW 703
           HF+DG+CSC DYW
Sbjct: 729 HFRDGVCSCNDYW 741



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 127/473 (26%), Positives = 231/473 (48%), Gaps = 43/473 (9%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL---LMHVRCGMMIDARRLFDEM 191
           +L+  C  L+S+R +    + M+  G     Y  ++++   ++      +  A  +F  +
Sbjct: 38  SLLHNCKTLQSLRIIH---AQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTI 94

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            E NL+  N +  G   S D + A  L++ +        S TF  ++++ A  +    G+
Sbjct: 95  QEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQ 154

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA-------------------------- 285
           Q+H   LK+G   +++V  +LI MY + G +EDA                          
Sbjct: 155 QIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRG 214

Query: 286 -----QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
                Q +FDE+  K  V WN +I+GYA  G  +EAL+L+ +M  + V+ D  T   ++ 
Sbjct: 215 YIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVS 274

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C +  S+E  +Q H  +  HGFG ++   +AL+D YSK G +E A  +F+++  K+VIS
Sbjct: 275 ACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVIS 334

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           WN LI GY +    +EA+ LF++ML +G  PN VT L++L AC+  G  + G  I   + 
Sbjct: 335 WNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYID 394

Query: 461 RDHK-IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG--NL 517
           +  K +   +     +I++  + G ++ A  +      K+  + W A++    ++G  + 
Sbjct: 395 KRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSS-WNAMIFGFAMHGRADA 453

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLP 570
               F+  +  G++P+ ++ +V LL+  + SG L     + RT+ +   +M P
Sbjct: 454 SFDLFSRMRKIGIQPDDIT-FVGLLSACSHSGMLDLGRHIFRTMTQD-YKMTP 504



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 169/399 (42%), Gaps = 87/399 (21%)

Query: 238 IRASAGLELISVGKQL------HSCALKMGFGDNVFVSCALIDMYSKCGSIED---AQGV 288
           IR    L L+   K L      H+  +K+G  +  +    LI+        E    A  V
Sbjct: 31  IRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISV 90

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F  + E   + WNT+  G+AL      AL LY  M   G+  + +TF  +++ C +  + 
Sbjct: 91  FKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAF 150

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK---------------- 392
           +  +Q H  +++ G  LD+  +++L+  Y + GR+EDA  VFDK                
Sbjct: 151 KEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGY 210

Query: 393 ---------------MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
                          +  K+V+SWNA+I+GY   G  +EA+ELF+ M+   +RP+  T +
Sbjct: 211 ASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMV 270

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
            V+SAC++SG  E G ++   +  DH           +I+L  + G L+ A  L    P+
Sbjct: 271 TVVSACAQSGSIELGRQVHLWID-DHGFGSNLKIVNALIDLYSKCGELETACGLFERLPY 329

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
           K              ++ N  +G +    LY                       KEA  +
Sbjct: 330 KDV------------ISWNTLIGGYTHMNLY-----------------------KEALLL 354

Query: 558 IRTLRRKG--------LRMLPACSW---IEVKKQPHVFL 585
            + + R G        L +LPAC+    I++ +  HV++
Sbjct: 355 FQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 393


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/572 (37%), Positives = 348/572 (60%), Gaps = 2/572 (0%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y +L+ +CI  +++   K++ +     G   +  +  +++ ++     +++AR LFD++P
Sbjct: 50  YTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIP 109

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           ++NL   N++I G   +G +  A +L+  + +      + T   +++A + L  I  G+ 
Sbjct: 110 KQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRS 169

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H   +K G+  ++FV  ALIDMY+KCG + DA  VFD++  +  V WN+++A YA +G+
Sbjct: 170 IHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGH 229

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            +E++ L  EM  +GV+    T   +I     +A L + ++ H    RHGF  +    +A
Sbjct: 230 PDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTA 289

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D Y+K G ++ A  +F+++  K V+SWNA+I GY  HG    A++LF++M     RP+
Sbjct: 290 LIDMYAKCGSVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPD 348

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
           H+TF+ VL+ACSR  L + G  ++  M RD+ I P   HY CMI+LLG  G LDEA+ LI
Sbjct: 349 HITFVGVLAACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLI 408

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
           R    K    +W ALL +C+++GN+EL + A EKL  +EP+   NYV+L N+Y  SGK +
Sbjct: 409 RNMSVKPDSGVWGALLNSCKIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWE 468

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
              ++ + +  K ++   ACSWIEVK + + FL+GD SH  +  IY ++ R+   + + G
Sbjct: 469 GVEKLRQVMIDKRIKKNIACSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAG 528

Query: 613 YVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           Y P+  ++  DV+E E+  ++  HSE+LA+AFGLI+TS  T L I ++ RIC DCH AIK
Sbjct: 529 YAPDTGSVFHDVEEDEKTSMVCSHSERLAIAFGLISTSPGTRLLITKNLRICEDCHVAIK 588

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            I+ +  REI VRD +R+H FK GMCSCGD+W
Sbjct: 589 FISKIMEREITVRDVNRYHSFKHGMCSCGDHW 620



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 183/368 (49%), Gaps = 6/368 (1%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I     N  +  A+ L+  +  + G    + T   ++ AC  L +I E + +  Y++ +G
Sbjct: 120 IRGYAWNGPHDNAIILYHKM-LDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSG 178

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           +E DL++   ++ M+ +CG ++DA R+FD++  R+ V  N ++A    +G   E+  L  
Sbjct: 179 WERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCR 238

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           ++          T  T+I +SA +  +  G+++H    + GF  N  V  ALIDMY+KCG
Sbjct: 239 EMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCG 298

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           S++ A  +F+ + EK  V WN II GYA+HG +  ALDL+ +MR    + DH TF  ++ 
Sbjct: 299 SVKVALALFERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLA 357

Query: 341 ICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NV 398
            C+R   L+  +  +  +VR +G    +   + ++D     G++++A  +   M  K + 
Sbjct: 358 ACSRGRLLDEGRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDS 417

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
             W AL+     HG  E A    E+++   + P+      +L+          G E  + 
Sbjct: 418 GVWGALLNSCKIHGNVELAELALEKLI--ELEPDDSGNYVILANMYAQSGKWEGVEKLRQ 475

Query: 459 MSRDHKIK 466
           +  D +IK
Sbjct: 476 VMIDKRIK 483



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 114/267 (42%), Gaps = 34/267 (12%)

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
           H+ ++ +++ C    +L   KQ HA     G   +    + LV  Y+    + +AR++FD
Sbjct: 47  HYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFD 106

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR-SGLSE 450
           K+  +N+  WN LI GY  +G  + A+ L+ +ML  G+RP++ T   VL ACS  S + E
Sbjct: 107 KIPKQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGE 166

Query: 451 ----------RGWE--IFQSMSR-----------------DHKIKPRAMHYACMIELLGR 481
                      GWE  +F   +                  D  +   A+ +  M+    +
Sbjct: 167 GRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQ 226

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE-KLYGMEPEKLSNYVV 540
            G  DE+ +L R       +   A L+T    + ++    +  E   +G      SN  V
Sbjct: 227 NGHPDESISLCREMAANGVRPTEATLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKV 286

Query: 541 ---LLNIYNSSGKLKEAAEVIRTLRRK 564
              L+++Y   G +K A  +   LR K
Sbjct: 287 KTALIDMYAKCGSVKVALALFERLREK 313


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/635 (35%), Positives = 359/635 (56%), Gaps = 43/635 (6%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +  L  + R REAL++   ++ +G   + S+TY + ++AC  L S+R  K++ + ++   
Sbjct: 262 VSALSQSGRVREALDMVVDMQSKG-VRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL 320

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              D Y+ + ++ ++ + G   +A+ +F+ + +RN V+  ++I+G +  G + E+  LF 
Sbjct: 321 PHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFN 380

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +  E         AT+I        + +G+QLHS  LK G    V VS +LI MY+KC 
Sbjct: 381 QMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCD 440

Query: 281 SIEDAQGVF-------------------------------DEMSEKTTVGWNTIIAGYAL 309
           +++ A+ +F                               D MSEK  + WN ++  Y  
Sbjct: 441 NLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQ 500

Query: 310 HGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
           HG  E+ L +Y  M  +  V+ D  T+  + + C  L + +   Q     V+ G  +D  
Sbjct: 501 HGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTS 560

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             +A++  YSK GRI +AR VFD +  K+++SWNA+I GY  HG G++A+E+F+ +L  G
Sbjct: 561 VANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRG 620

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
            +P++++++AVLS CS SGL + G   F  M R H I P   H++CM++LLGR G L EA
Sbjct: 621 AKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEA 680

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
             LI   P K T  +W ALL+AC+++GN EL + AA+ ++ ++     +Y+++  IY  +
Sbjct: 681 KDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADA 740

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           GK  ++A++ + +R KG++  P  SW+EV  + HVF + D SH Q   I +K+D +M +I
Sbjct: 741 GKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKI 800

Query: 609 SKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHN 668
           ++ GYV  + T          R   +HSEKLAVAFGL+    W P+ I+++ RIC DCH 
Sbjct: 801 ARLGYVRTDST----------RSEIHHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHT 850

Query: 669 AIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            IKLI+ VTGRE V+RDA RFHHF  G CSCGDYW
Sbjct: 851 VIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 885



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 217/468 (46%), Gaps = 56/468 (11%)

Query: 134 DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193
           + L+ A +   ++ + +R+   +L     P++   N +L  + + G + DA  LF  MP 
Sbjct: 63  NTLLHAYLSCGALSDARRL---LLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPA 119

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFL------DLWEEFSDCGSRTFATMIRASAGLELI 247
           R++ S N +++G   S  YL +   FL      D W       + T A  +++   L   
Sbjct: 120 RDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPN-----AFTLACAMKSCGALGWH 174

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ--------------------- 286
           S+  QL +   K    D+  V+ AL+DM+ +CG+++ A                      
Sbjct: 175 SLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGY 234

Query: 287 ----GV------FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
               GV      FD M E+  V WN +++  +  G   EALD+  +M+  GV++D  T++
Sbjct: 235 VKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYT 294

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
             +  C RL+SL   KQ HA ++R+   +D    SALV+ Y+K G  ++A+ VF+ +  +
Sbjct: 295 SSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDR 354

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA-CSRSGLSERGWEI 455
           N ++W  LI+G+  +G   E+VELF QM    M  +      ++S  CSR  L   G ++
Sbjct: 355 NNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLC-LGRQL 413

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM--WAALLTACRV 513
                +  +I+   +  + +I +  +   L  A A+ R   F   K++  W +++TA   
Sbjct: 414 HSLCLKSGQIQAVVVSNS-LISMYAKCDNLQSAEAIFR---FMNEKDIVSWTSMITAYSQ 469

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            GN+   +   E   GM  + +  +  +L  Y   G  ++   + + +
Sbjct: 470 VGNVAKAR---EFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVM 514



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 125/323 (38%), Gaps = 67/323 (20%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ---- 286
           ++ FA  +R+      ++  + LH   + +G    VF+   L+  Y  CG++ DA+    
Sbjct: 24  TQAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLL 83

Query: 287 ----------------------------GVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
                                        +F  M  +    WNT+++GY        +L+
Sbjct: 84  MDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLE 143

Query: 319 LYYEMRDSGVKM-DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
            +  M  SG    + FT +  ++ C  L     A Q  A + +     D    +ALVD +
Sbjct: 144 TFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMF 203

Query: 378 SKWGRIEDARHVFDK-----MLCKN--------------------------VISWNALIA 406
            + G ++ A  +F +     M C+N                          V+SWN +++
Sbjct: 204 VRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVS 263

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD-HKI 465
                GR  EA+++   M   G+R +  T+ + L+AC+R      G ++   + R+   I
Sbjct: 264 ALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHI 323

Query: 466 KPRAMHYACMIELLGREGLLDEA 488
            P     + ++EL  + G   EA
Sbjct: 324 DPYVA--SALVELYAKSGCFKEA 344



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 104/208 (50%), Gaps = 14/208 (6%)

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           +++ ++ +++ Y+K GR+ DA  +F +M  ++V SWN L++GY    +   ++E F  M 
Sbjct: 90  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 149

Query: 426 LNGMR-PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
            +G   PN  T    + +C   G      ++  +M +    +  +   A ++++  R G 
Sbjct: 150 RSGDSWPNAFTLACAMKSCGALGWHSLALQLL-AMVQKFDSQDDSEVAAALVDMFVRCGA 208

Query: 485 LDEA---FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNYVV 540
           +D A   F  I+        +M A  +    V+  LEL        +   PE+ + ++ +
Sbjct: 209 VDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALEL--------FDSMPERDVVSWNM 260

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
           +++  + SG+++EA +++  ++ KG+R+
Sbjct: 261 MVSALSQSGRVREALDMVVDMQSKGVRL 288


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  421 bits (1081), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/570 (35%), Positives = 350/570 (61%), Gaps = 1/570 (0%)

Query: 135  ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
            +++ A + L S+   K + +  + T ++ + ++   +L M+ +CG + DAR  F+ +   
Sbjct: 637  SVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTND 696

Query: 195  NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
            +++  +++I+         +AF LF+ +          + +++++A A + L+ +GKQ+H
Sbjct: 697  DVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIH 756

Query: 255  SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
            + A+K+G    +FV  ALID+Y+KC  +E +  +F  + +   V WNTII GY+  G+ E
Sbjct: 757  NHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGE 816

Query: 315  EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
             AL ++ EMR + V     T+S ++R C   AS+ H  Q H  + +  F  D + +++L+
Sbjct: 817  AALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLI 876

Query: 375  DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
            D Y+K G I DAR +F+ +   +++SWNA+I+GY  HG+   A ELF+ M  N ++ N +
Sbjct: 877  DSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDI 936

Query: 435  TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
            TF+A+LS C  +GL  +G  +F SM  DH I+P   HY C++ LLGR G L++A   I  
Sbjct: 937  TFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGD 996

Query: 495  APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
             P   +  +W ALL++C V+ N+ELG+F+AEK+  +EP+  + YV+L N+Y+++G L + 
Sbjct: 997  IPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQV 1056

Query: 555  AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
            A   +++R  G+R  P  SW+E+K + H F  G + H   + I   ++ + L+  + GYV
Sbjct: 1057 AFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLEWLNLKAIREGYV 1116

Query: 615  PEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLI 673
            P+   +L D++E+++ R+L  HSE+LA+A+GL+ T    P++I+++ R C DCH   K+I
Sbjct: 1117 PDTDEVLHDLEEEQKVRMLWVHSERLALAYGLVMTPPGHPIRIMKNLRSCLDCHAIFKVI 1176

Query: 674  AMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            + +  +EI+VRD +RFHHF++G CSCGDYW
Sbjct: 1177 SKIVKQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/341 (31%), Positives = 177/341 (51%), Gaps = 7/341 (2%)

Query: 128 VGSSTYDALISACIGLRSIREVKRVFSYMLSTG--FEPDLYMRNRVLLMHVRCGMMIDAR 185
           V S  Y  L+  C+     R  + V  +++ +G     DL+  N +L M+ + G    A 
Sbjct: 426 VDSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAH 485

Query: 186 RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
           R+FD +PERN+VS   ++ G    G++ EA  LF  L  E  +       T+++    ++
Sbjct: 486 RVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMD 545

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
            + +   +H+CA K+G   N FV  ALID YS CG + DA+ VFD +  K  V W  +++
Sbjct: 546 TLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVS 605

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
            Y+ +   E  L ++ +MR +  K++ F  + ++R    L+S+   K  HA  V+  +  
Sbjct: 606 CYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDT 665

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           +     AL+D Y+K G IEDAR  F+ +   +VI W+ +I+ Y    + E+A ELF +M+
Sbjct: 666 ERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMM 725

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
            + + PN  +  +VL AC+   L + G +I      +H IK
Sbjct: 726 RSSVSPNEFSLSSVLQACANMPLLDLGKQI-----HNHAIK 761



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/512 (22%), Positives = 232/512 (45%), Gaps = 46/512 (8%)

Query: 85  LPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLR 144
           LP+  M        + ++   L   + EA  LF+ L +EG  +V       ++   + + 
Sbjct: 491 LPERNM----VSFVTLVQGHALRGEFEEASALFQRLRWEG-HEVNQFVLTTVLKLVVAMD 545

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           ++     V +     G + + ++ + ++  +  CG++ DARR+FD +  ++ V+   +++
Sbjct: 546 TLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVS 605

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
              ++        +F  +    S        +++RA+  L  + +GK +H+C++K  +  
Sbjct: 606 CYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDT 665

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
              V  AL+DMY+KCG+IEDA+  F+ ++    + W+ +I+ YA    +E+A +L+  M 
Sbjct: 666 ERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMM 725

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
            S V  + F+ S +++ C  +  L+  KQ H   ++ G   ++   +AL+D Y+K   +E
Sbjct: 726 RSSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDME 785

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            +  +F  +   N +SWN +I GY   G GE A+ +F +M    +    VT+ +VL AC+
Sbjct: 786 SSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACA 845

Query: 445 RS-----------------------------------GLSERGWEIFQSMSRDHKIKPRA 469
            +                                   G      EIF+++     +   A
Sbjct: 846 STASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNA 905

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG--KFAAEKL 527
           +     +   G+  +  E F ++     K     + ALL+ C   G +  G   F + +L
Sbjct: 906 IISGYAVH--GQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRL 963

Query: 528 -YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVI 558
            +G+EP  + +Y  ++ +   +G+L +A   I
Sbjct: 964 DHGIEP-SMEHYTCIVRLLGRAGRLNDALNFI 994



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 81/181 (44%), Gaps = 2/181 (1%)

Query: 132  TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            TY +++ AC    SI  V +V   +  + F  D  + N ++  + +CG + DAR +F+ +
Sbjct: 836  TYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETL 895

Query: 192  PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
             E +LVS N II+G    G    A  LF  + +        TF  ++       L+S G 
Sbjct: 896  KECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGL 955

Query: 252  QL-HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG-VFDEMSEKTTVGWNTIIAGYAL 309
             L  S  L  G   ++     ++ +  + G + DA   + D  S  + + W  +++   +
Sbjct: 956  SLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIV 1015

Query: 310  H 310
            H
Sbjct: 1016 H 1016


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 226/635 (35%), Positives = 359/635 (56%), Gaps = 43/635 (6%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +  L  + R REAL++   ++ +G   + S+TY + ++AC  L S+R  K++ + ++   
Sbjct: 242 VSALSQSGRVREALDMVVDMQSKG-VRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL 300

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              D Y+ + ++ ++ + G   +A+ +F+ + +RN V+  ++I+G +  G + E+  LF 
Sbjct: 301 PHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFN 360

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +  E         AT+I        + +G+QLHS  LK G    V VS +LI MY+KC 
Sbjct: 361 QMRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCD 420

Query: 281 SIEDAQGVF-------------------------------DEMSEKTTVGWNTIIAGYAL 309
           +++ A+ +F                               D MSEK  + WN ++  Y  
Sbjct: 421 NLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQ 480

Query: 310 HGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
           HG  E+ L +Y  M  +  V+ D  T+  + + C  L + +   Q     V+ G  +D  
Sbjct: 481 HGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTS 540

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             +A++  YSK GRI +AR VFD +  K+++SWNA+I GY  HG G++A+E+F+ +L  G
Sbjct: 541 VANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRG 600

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
            +P++++++AVLS CS SGL + G   F  M R H I P   H++CM++LLGR G L EA
Sbjct: 601 AKPDYISYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEA 660

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
             LI   P K T  +W ALL+AC+++GN EL + AA+ ++ ++     +Y+++  IY  +
Sbjct: 661 KDLIDDMPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADA 720

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           GK  ++A++ + +R KG++  P  SW+EV  + HVF + D SH Q   I +K+D +M +I
Sbjct: 721 GKSDDSAQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKI 780

Query: 609 SKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHN 668
           ++ GYV  + T          R   +HSEKLAVAFGL+    W P+ I+++ RIC DCH 
Sbjct: 781 ARLGYVRTDST----------RSEIHHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHT 830

Query: 669 AIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            IKLI+ VTGRE V+RDA RFHHF  G CSCGDYW
Sbjct: 831 VIKLISTVTGREFVIRDAVRFHHFNGGSCSCGDYW 865



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 217/468 (46%), Gaps = 56/468 (11%)

Query: 134 DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193
           + L+ A +   ++ + +R+   +L     P++   N +L  + + G + DA  LF  MP 
Sbjct: 43  NTLLHAYLSCGALSDARRL---LLMDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPA 99

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFL------DLWEEFSDCGSRTFATMIRASAGLELI 247
           R++ S N +++G   S  YL +   FL      D W       + T A  +++   L   
Sbjct: 100 RDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPN-----AFTLACAMKSCGALGWH 154

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ--------------------- 286
           S+  QL +   K    D+  V+ AL+DM+ +CG+++ A                      
Sbjct: 155 SLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGY 214

Query: 287 ----GV------FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
               GV      FD M E+  V WN +++  +  G   EALD+  +M+  GV++D  T++
Sbjct: 215 VKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYT 274

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
             +  C RL+SL   KQ HA ++R+   +D    SALV+ Y+K G  ++A+ VF+ +  +
Sbjct: 275 SSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDR 334

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA-CSRSGLSERGWEI 455
           N ++W  LI+G+  +G   E+VELF QM    M  +      ++S  CSR  L   G ++
Sbjct: 335 NNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLISGCCSRMDLC-LGRQL 393

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM--WAALLTACRV 513
                +  +I+   +  + +I +  +   L  A A+ R   F   K++  W +++TA   
Sbjct: 394 HSLCLKSGQIQAVVVSNS-LISMYAKCDNLQSAEAIFR---FMNEKDIVSWTSMITAYSQ 449

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            GN+   +   E   GM  + +  +  +L  Y   G  ++   + + +
Sbjct: 450 VGNVAKAR---EFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVM 494



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/323 (21%), Positives = 125/323 (38%), Gaps = 67/323 (20%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ---- 286
           ++ FA  +R+      ++  + LH   + +G    VF+   L+  Y  CG++ DA+    
Sbjct: 4   TQAFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLL 63

Query: 287 ----------------------------GVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
                                        +F  M  +    WNT+++GY        +L+
Sbjct: 64  MDIAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLE 123

Query: 319 LYYEMRDSGVKM-DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
            +  M  SG    + FT +  ++ C  L     A Q  A + +     D    +ALVD +
Sbjct: 124 TFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMF 183

Query: 378 SKWGRIEDARHVFDK-----MLCKN--------------------------VISWNALIA 406
            + G ++ A  +F +     M C+N                          V+SWN +++
Sbjct: 184 VRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVS 243

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD-HKI 465
                GR  EA+++   M   G+R +  T+ + L+AC+R      G ++   + R+   I
Sbjct: 244 ALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHI 303

Query: 466 KPRAMHYACMIELLGREGLLDEA 488
            P     + ++EL  + G   EA
Sbjct: 304 DPYVA--SALVELYAKSGCFKEA 324



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 104/208 (50%), Gaps = 14/208 (6%)

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           +++ ++ +++ Y+K GR+ DA  +F +M  ++V SWN L++GY    +   ++E F  M 
Sbjct: 70  NVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMH 129

Query: 426 LNGMR-PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
            +G   PN  T    + +C   G      ++  +M +    +  +   A ++++  R G 
Sbjct: 130 RSGDSWPNAFTLACAMKSCGALGWHSLALQLL-AMVQKFDSQDDSEVAAALVDMFVRCGA 188

Query: 485 LDEA---FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNYVV 540
           +D A   F  I+        +M A  +    V+  LEL        +   PE+ + ++ +
Sbjct: 189 VDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALEL--------FDSMPERDVVSWNM 240

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
           +++  + SG+++EA +++  ++ KG+R+
Sbjct: 241 MVSALSQSGRVREALDMVVDMQSKGVRL 268


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/602 (38%), Positives = 355/602 (58%), Gaps = 16/602 (2%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA++LF  +    G+     T   LIS C  ++ +   K + S+++ +G   DL +   +
Sbjct: 244 EAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSL 303

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLE--AFLLFLDLWEE---F 226
           + M+ +CG++ +AR++FD M E N++S   ++ G +  G   E  A  +F ++  +    
Sbjct: 304 VDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVA 363

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            +C   TF+ +++A A L     G+Q+H   +K+G      V   L+ +Y+K G +E A+
Sbjct: 364 PNC--FTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESAR 421

Query: 287 GVFDEMSEKT----TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
             FD + EK     TV  +T +  + L+  SE+ LD   E   SGV    FT++ ++   
Sbjct: 422 KCFDVLFEKNLVSETVVDDTNVKDFNLN--SEQDLDREVEYVGSGVS--SFTYASLLSGA 477

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
             + ++   +Q HA +V+ GF  D+  N+AL+  YSK G  E A  VF+ M   NVI+W 
Sbjct: 478 ACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWT 537

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           ++I G+  HG   +A+ELF  ML  G++PN VT++AVLSACS  GL +  W+ F SM  +
Sbjct: 538 SIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDN 597

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
           H I PR  HYACM++LLGR GLL EA   I   PF     +W   L +CRV+ N +LG+ 
Sbjct: 598 HGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEH 657

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPH 582
           AA+ +   EP   + Y++L N+Y + G+ ++ A + + +++K +      SWIEV+ Q H
Sbjct: 658 AAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVH 717

Query: 583 VFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAV 641
            F  GD  H + ++IY K+D + L+I   GYVP    +L DV DEQ+++ L  HSEKLAV
Sbjct: 718 KFHVGDTLHPKAQQIYEKLDELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAV 777

Query: 642 AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
           AF LI+T +  P+++ ++ R+C DCH AIK I+MV+GREIVVRDA+RFHH KDG CSC D
Sbjct: 778 AFALISTPNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCND 837

Query: 702 YW 703
           YW
Sbjct: 838 YW 839



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 159/317 (50%), Gaps = 9/317 (2%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           REA+ +F  +  +GG      T+  ++ AC  L      ++V    +  G      + N 
Sbjct: 347 REAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNG 406

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ ++ + G M  AR+ FD + E+NLVS    +    +  D+       LD   E+   G
Sbjct: 407 LVSVYAKSGRMESARKCFDVLFEKNLVS--ETVVDDTNVKDFNLNSEQDLDREVEYVGSG 464

Query: 231 --SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
             S T+A+++  +A +  I  G+Q+H+  +K+GF  ++ V+ ALI MYSKCG+ E A  V
Sbjct: 465 VSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQV 524

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F++M +   + W +II G+A HG++ +AL+L+Y M ++GVK +  T+  ++  C+ +  +
Sbjct: 525 FNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLI 584

Query: 349 EHAKQAHAGLV-RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIA 406
           + A +    +   HG    +   + +VD   + G + +A    + M    + + W   + 
Sbjct: 585 DEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLG 644

Query: 407 G---YGNHGRGEEAVEL 420
               + N   GE A ++
Sbjct: 645 SCRVHRNTKLGEHAAKM 661



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 143/317 (45%), Gaps = 15/317 (4%)

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM--SEKTTVGWNTIIAG 306
           +GK LH          +  +  +LI +YSK      A  +F  M  S++  V +++II+ 
Sbjct: 70  LGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISC 129

Query: 307 YALHGYSEEALDLYYEMR-DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG-FG 364
           +A +    +A++++ ++    GV  + + F+ +IR C +    +        +++ G F 
Sbjct: 130 FANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFD 189

Query: 365 LDIVANSALVDFYSK---WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
             +     L+D + K      +E AR VFDKM  KNV++W  +I     +G  +EA++LF
Sbjct: 190 SHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLF 249

Query: 422 EQMLL-NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
            +ML+ +G  P+  T   ++S C+       G E+   + R   +    +  + ++++  
Sbjct: 250 LEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCS-LVDMYA 308

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540
           + GL+ EA  +  G       + W AL     VNG +  G     +   M    L    V
Sbjct: 309 KCGLVQEARKVFDGMREHNVMS-WTAL-----VNGYVRGGGGYEREAMRMFSNMLLQGGV 362

Query: 541 LLNIYNSSGKLKEAAEV 557
             N +  SG LK  A +
Sbjct: 363 APNCFTFSGVLKACASL 379



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 68/126 (53%), Gaps = 3/126 (2%)

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           T S++++ C R  +    K  H  L      LD +  ++L+  YSK      A  +F  M
Sbjct: 54  TSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSM 113

Query: 394 LC--KNVISWNALIAGYGNHGRGEEAVELFEQMLL-NGMRPNHVTFLAVLSACSRSGLSE 450
               ++V+S++++I+ + N+    +AVE+F+Q+LL +G+ PN   F AV+ AC + G  +
Sbjct: 114 ENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFK 173

Query: 451 RGWEIF 456
            G  +F
Sbjct: 174 TGLCLF 179


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/574 (38%), Positives = 345/574 (60%), Gaps = 2/574 (0%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           S Y +L+ +C+  ++I   K++ + +   G   +  +  +++ ++  C  + +A  LFD 
Sbjct: 2   SYYASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDR 61

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           + +RNL   N++I G   +G Y  A  L+  + +        TF  +++A + L  +  G
Sbjct: 62  ISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEG 121

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           K++H   ++ G   +VFV  ALIDMY+KCG +E A+ VFD++ E+  V WN+++A Y+ +
Sbjct: 122 KKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQN 181

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G  +E+L L   M  +G+K    TF + I        L   K+ H    RHGF  +    
Sbjct: 182 GQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVK 241

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           +AL+D Y+K G +  AR +F+ +  K V+SWNA+I GY  HG   EA++LF++M    + 
Sbjct: 242 TALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMK-GKVL 300

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           P+H+TF+ VL+ACS  GL   G   F+SM  D  I P   HY CMI+LLG  G L+EA+ 
Sbjct: 301 PDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYK 360

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
           LI     +    +W ALL +C+++GN+E+G+ A EKL  +EP+   NYV+L N+Y  +GK
Sbjct: 361 LIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGK 420

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
               A +   +  KGL+   ACSWIEV  + H FLS D SH +++ IY ++ R    + +
Sbjct: 421 WDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKE 480

Query: 611 HGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
            GY P+  ++  DV++ E+  ++S HSE+LA+AFGLI+TS  T L I+++ RIC DCH A
Sbjct: 481 AGYAPQVGSVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVA 540

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           IK I+ +T REI +RD +R+HHFKDG+CSCGD+W
Sbjct: 541 IKFISKITEREITIRDVNRYHHFKDGVCSCGDFW 574



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 92/213 (43%), Gaps = 10/213 (4%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N +  E+L L  ++ F G       T+   I+A      + + K +  Y    GFE +  
Sbjct: 181 NGQPDESLALCRVMAFNG-LKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDK 239

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           ++  ++ M+ + G +  AR LF+ + E+ +VS N +I G    G   EA    LDL++E 
Sbjct: 240 VKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEA----LDLFKEM 295

Query: 227 SD---CGSRTFATMIRASAGLELISVGK-QLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
                    TF  ++ A +   L++ GK    S          V     +ID+   CG +
Sbjct: 296 KGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRL 355

Query: 283 EDAQGVFDEMSEKTTVG-WNTIIAGYALHGYSE 314
           E+A  +  EM  +   G W  ++    +HG  E
Sbjct: 356 EEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVE 388


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/601 (34%), Positives = 349/601 (58%), Gaps = 23/601 (3%)

Query: 126 FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
            +V S    +++ AC  +   R  K +  + +  G   D+++ N ++ M+  CG ++ AR
Sbjct: 105 IEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSAR 164

Query: 186 RLFDEMPERNLVSCNMII----------------------AGMIDSGDYLEAFLLFLDLW 223
            LFD+M ER++VS + +I                      AG I   D  E   LF+ + 
Sbjct: 165 LLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMI 224

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
           EE       T  ++I +   +  + +GK+LH+  L+ GFG ++ ++ AL+DMY KCG I 
Sbjct: 225 EENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIR 284

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
            A+ +FD M  K  + W  +I+ YA     + A  L+ +MRD+GV+ +  T   ++ +C 
Sbjct: 285 SARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCA 344

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
              +L+  K  HA + + G  +D++  +AL+D Y+K G I  A+ +F + + +++ +WN 
Sbjct: 345 VNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNV 404

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           ++AGYG HG GE+A++LF +M   G++PN +TF+  L ACS +GL   G  +F+ M  D 
Sbjct: 405 MMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDF 464

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            + P+  HY CM++LLGR GLLDEA+ +I   P      +W A+L AC+++ N  +G+ A
Sbjct: 465 GLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELA 524

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
           A +L  +EP+     V++ NIY ++ +  + A + + ++  G++  P  S IEV    H 
Sbjct: 525 ARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMSSIEVNGLVHD 584

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVA 642
           F  GD +H   ++I   +  M  ++ + GY+P+   +L ++DE+E+   L+YHSEKLA+A
Sbjct: 585 FKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKETALNYHSEKLAMA 644

Query: 643 FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           FGLI+T+  TP+++V++ RIC DCH   KL++ +  R I+VRD +RFHHF++G CSCG Y
Sbjct: 645 FGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFHHFREGSCSCGGY 704

Query: 703 W 703
           W
Sbjct: 705 W 705



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 110/262 (41%), Gaps = 55/262 (20%)

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           AL+ Y  MR   +++D F    +++ C++++     K+ H   V++G   D+   +AL+ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWN----------------------ALIAGYGNHGR 413
            YS+ G +  AR +FDKM  ++V+SW+                      A+IAGY     
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR------------ 461
            EE   LF +M+   + PN +T L+++ +C   G  + G  +   + R            
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATA 272

Query: 462 ------------------DHKIKPRAMHYACMIELLGREGLLDEAFAL---IRGAPFKTT 500
                             D       M +  MI    +   +D AF L   +R    +  
Sbjct: 273 LVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPN 332

Query: 501 KNMWAALLTACRVNGNLELGKF 522
           +    +LL+ C VNG L++GK+
Sbjct: 333 ELTMVSLLSLCAVNGALDMGKW 354



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 3/204 (1%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           A +LF  +  + G      T  +L+S C    ++   K   +Y+   G E D+ ++  ++
Sbjct: 317 AFQLFVQMR-DNGVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALI 375

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            M+ +CG +  A+RLF E  +R++ + N+++AG    G   +A  LF ++          
Sbjct: 376 DMYAKCGDISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDI 435

Query: 233 TFATMIRASAGLELISVGKQLHSCAL-KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           TF   + A +   L+  GK L    +   G    V     ++D+  + G +++A  + + 
Sbjct: 436 TFIGALHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIES 495

Query: 292 MSEKTTVG-WNTIIAGYALHGYSE 314
           M     +  W  ++A   +H  S 
Sbjct: 496 MPVTPNIAIWGAMLAACKIHKNSN 519


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/555 (39%), Positives = 337/555 (60%), Gaps = 2/555 (0%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           K++  + + T    D ++   ++  + R   M +A  LF      +LV+ N +++G   S
Sbjct: 444 KQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQS 502

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
            D  +   LF  + ++       T AT+++    L  I+ GKQ+H+ A+K G+  +++VS
Sbjct: 503 HDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS 562

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
             ++DMY KCG +  AQ  FD +     V W T+I+G   +G  E AL ++ +MR  GV 
Sbjct: 563 SGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVL 622

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            D FT + + +  + L +LE  +Q HA  ++     D    ++LVD Y+K G I+DA  +
Sbjct: 623 PDEFTIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCL 682

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449
           F ++   N+ +WNA++ G   HG G+EA++LF+QM   G++P+ VTF+ VLSACS SGL 
Sbjct: 683 FKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLV 742

Query: 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509
              ++  +SM RD+ IKP   HY+C+ + LGR GL+ EA  LI     + + +M+  LL 
Sbjct: 743 SEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLA 802

Query: 510 ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRML 569
           ACRV G+ E GK  A KL  +EP   S YV+L N+Y ++ K  E       ++   ++  
Sbjct: 803 ACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKD 862

Query: 570 PACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE- 628
           P  SWIEVK + H+F+  D+S+ QT+ IY+KV  M+ +I + GYVPE    L DV+E+E 
Sbjct: 863 PGFSWIEVKNKIHLFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEK 922

Query: 629 QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
           +R L YHSEKLAVAFGL++T   TP++++++ R+C DCHNA+K I+ V  REIV+RDA+R
Sbjct: 923 ERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDANR 982

Query: 689 FHHFKDGMCSCGDYW 703
           FH FKDG+CSCGDYW
Sbjct: 983 FHRFKDGICSCGDYW 997



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 123/459 (26%), Positives = 229/459 (49%), Gaps = 37/459 (8%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           E   +    T+  +++  + L S+   ++V    L  G +  L + N ++ M+ +   + 
Sbjct: 315 ESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIG 374

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMI 238
            AR +F+ M ER+L+S N +IAG+  S   +EA  LF+ L      CG +    T  +++
Sbjct: 375 LARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLR----CGLKPDHYTMTSVL 430

Query: 239 RASAGL-ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           +A++ L E +S+ KQ+H  A+K     + FVS ALID YS+   +++A+ +F   +    
Sbjct: 431 KAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDL 489

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           V WN +++GY       + L+L+  M   G + D FT + +++ C  L ++   KQ HA 
Sbjct: 490 VAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVLKTCGFLFAINQGKQVHAY 549

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
            ++ G+ LD+  +S ++D Y K G +  A+  FD +   + ++W  LI+G   +G  E A
Sbjct: 550 AIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERA 609

Query: 418 VELFEQMLLNGMRPNHVTF--LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC- 474
           + +F QM L G+ P+  T   LA  S+C              ++ +  +I   A+   C 
Sbjct: 610 LHVFSQMRLMGVLPDEFTIATLAKASSC------------LTALEQGRQIHANALKLNCT 657

Query: 475 --------MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT--ACRVNGNLELGKFAA 524
                   ++++  + G +D+A+ L +          W A+L   A    G   L  F  
Sbjct: 658 SDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNI-TAWNAMLVGLAQHGEGKEALQLFKQ 716

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
            +  G++P+K++ ++ +L+  + SG + EA + IR++ R
Sbjct: 717 MESLGIKPDKVT-FIGVLSACSHSGLVSEAYKYIRSMHR 754



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 184/363 (50%), Gaps = 17/363 (4%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           + LELF ++  +G       T   ++  C  L +I + K+V +Y + +G++ DL++ + +
Sbjct: 507 KTLELFALMHKQGERS-DDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGI 565

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD------LWEE 225
           L M+V+CG M  A+  FD +P  + V+   +I+G I++G+   A  +F        L +E
Sbjct: 566 LDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDE 625

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
           F      T AT+ +AS+ L  +  G+Q+H+ ALK+    + FV  +L+DMY+KCGSI+DA
Sbjct: 626 F------TIATLAKASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDMYAKCGSIDDA 679

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
             +F  +       WN ++ G A HG  +EAL L+ +M   G+K D  TF  ++  C+  
Sbjct: 680 YCLFKRIEMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHS 739

Query: 346 ASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WNA 403
             +  A +    + R +G   +I   S L D   + G +++A ++ D M  +   S +  
Sbjct: 740 GLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRT 799

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           L+A     G  E    +  ++L   + P   +   +LS    +       ++ ++M + H
Sbjct: 800 LLAACRVQGDTETGKRVATKLL--ELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGH 857

Query: 464 KIK 466
           K+K
Sbjct: 858 KVK 860



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 175/352 (49%), Gaps = 22/352 (6%)

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
           ++S N I++G + +G Y      F+D+ E   +C   TF  ++  +  L+ +++G+Q+H 
Sbjct: 287 IISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHC 346

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
            ALK+G    + VS +LI+MY K   I  A+ VF+ MSE+  + WN++IAG A      E
Sbjct: 347 MALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVE 406

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLA-SLEHAKQAHAGLVRHGFGLDIVANSALV 374
           A+ L+ ++   G+K DH+T + +++  + L   L  +KQ H   ++     D   ++AL+
Sbjct: 407 AVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALI 466

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D YS+   +++A  +F +    ++++WNA+++GY     G + +ELF  M   G R +  
Sbjct: 467 DAYSRNRCMKEAEVLFGRN-NFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDF 525

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL--I 492
           T   VL  C              ++++  ++   A+     ++L    G+LD       +
Sbjct: 526 TLATVLKTCG----------FLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDM 575

Query: 493 RGAPFK------TTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLS 536
             A F            W  L++ C  NG  E  L  F+  +L G+ P++ +
Sbjct: 576 SAAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFT 627



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 149/320 (46%), Gaps = 48/320 (15%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           ST D ++  C   R           +L+    P+ ++ N ++ M+ +CG +  ARR+FD+
Sbjct: 58  STSDLMLGKCTHAR-----------ILALEENPERFLVNNLISMYSKCGSLTYARRVFDK 106

Query: 191 MPERNLVSCNMIIAGMIDSGDYL-----EAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
           MPER+LVS N I+A    S + +     EAFLLF  L ++       T + M++      
Sbjct: 107 MPERDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSG 166

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
            +   +  H  A K+G   + FV+ AL+++Y K G +++ + +F+EM  +  V WN ++ 
Sbjct: 167 YVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLK 226

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
            Y   G+ EEA+DL      SG+  +  T  ++ RI                      G 
Sbjct: 227 AYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLSRIS---------------------GD 265

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           D           S+ G+++   +  D      +IS N +++GY + G+    ++ F  M+
Sbjct: 266 D-----------SEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMV 314

Query: 426 LNGMRPNHVTFLAVLSACSR 445
            + +  + VTF+ VL+   R
Sbjct: 315 ESDLECDQVTFILVLATAVR 334



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 154/334 (46%), Gaps = 33/334 (9%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +EA  LF IL  +  +     T   ++  C+    +   +    Y    G + D ++   
Sbjct: 134 KEAFLLFRILRQDVVY-TSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGA 192

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ ++++ G + + R LF+EMP R++V  N+++   ++ G   EA    +DL   F   G
Sbjct: 193 LVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEA----IDLSSAFHTSG 248

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
                  +R    L  IS              GD+           S+ G ++  +   D
Sbjct: 249 LHPNEITLRL---LSRIS--------------GDD-----------SEAGQVKSFENGND 280

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
             +    +  N I++GY   G     L  + +M +S ++ D  TF +++    RL SL  
Sbjct: 281 ASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLAL 340

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            +Q H   ++ G  L +  +++L++ Y K  +I  AR VF+ M  +++ISWN++IAG   
Sbjct: 341 GQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQ 400

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
                EAV LF Q+L  G++P+H T  +VL A S
Sbjct: 401 SDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAAS 434


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/627 (36%), Positives = 367/627 (58%), Gaps = 7/627 (1%)

Query: 80  LKESSLPDTQMKKPSAGICSQIEKLVLNKR-YREALELFEILEFEGGFDVGSSTYDALIS 138
           L+ + L  +Q+  P++  C+ I +   +K  ++EAL  ++ +  +G       T+ +L  
Sbjct: 38  LQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQG-LIPDRYTFPSLFK 96

Query: 139 ACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVS 198
           +C   R+  E K++  +    GF  D Y +N ++ M+  CG ++ AR++FD+M ++ +VS
Sbjct: 97  SC---RNSSEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVS 153

Query: 199 CNMIIAGMIDSGDYLEAFLLFLDLWE-EFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257
              +I          EA  LF  + + E       T   ++ A A    +++ K++H   
Sbjct: 154 WATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYI 213

Query: 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL 317
            + GFG +V ++  L+D+Y KCG ++ A+ +FD+  EK    WN +I G+      EEAL
Sbjct: 214 DEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEAL 273

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
            L+ EM+  G+K D  T + ++  CT L +LE  K  HA + +    +D+   +ALVD Y
Sbjct: 274 LLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMY 333

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           +K G IE A  VF +M  K+V++W ALI G    G+ E A++ F++M + G++P+ +TF+
Sbjct: 334 AKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFV 393

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
            VL+ACS +G  + G   F SMS  + I+P   HY  ++++LGR G + EA  LI+  P 
Sbjct: 394 GVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPM 453

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
              + +   LL ACR++GNLE  + AA++L  ++P     YV+L NIY SS K +EA   
Sbjct: 454 APDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRT 513

Query: 558 IRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEE 617
              +  +G+R  P CS IEV    H F+ GD SH Q+ EI   ++ M+ ++   GYVP++
Sbjct: 514 RELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDK 573

Query: 618 KTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMV 676
             +L D+ E+E+   LS HSEKLA+AFGL++TS  TP+++V++ RIC DCH+A KLI+ +
Sbjct: 574 SEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKL 633

Query: 677 TGREIVVRDASRFHHFKDGMCSCGDYW 703
             REI+VRD +RFHHFKDG CSC  +W
Sbjct: 634 YNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 161/351 (45%), Gaps = 40/351 (11%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYS--KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           KQ+H+  L+ G   + F +  ++   S  + GS++ A+ VF ++   T+   N+II G  
Sbjct: 5   KQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCT 64

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
                +EAL  Y EM   G+  D +TF  + + C   +     KQ H    + GF  D  
Sbjct: 65  DKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFASDTY 121

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN- 427
           A + L++ YS  G +  AR VFDKM  K V+SW  +I  +    +  EAV LF++M+ + 
Sbjct: 122 AQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSE 181

Query: 428 GMRPNHVTFLAVLSACSRSG-----------LSERGW-----------EIF-----QSMS 460
            ++PN VT + VL+AC+R+            + E G+           +++       ++
Sbjct: 182 NVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLA 241

Query: 461 RDHKIKPRAMH---YACMIELLGREGLLDEAFALIRGAPFKTTKN---MWAALLTACRVN 514
           RD   K +  +   +  MI     +   +EA  L R    K  K      A+LL AC   
Sbjct: 242 RDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHL 301

Query: 515 GNLELGKFAAEKLYGMEPE-KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           G LELGK+    +     +  ++    L+++Y   G ++ A +V   +  K
Sbjct: 302 GALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEK 352


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/623 (36%), Positives = 363/623 (58%), Gaps = 56/623 (8%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           ++ AC  L+++ + K + SY +  G   D ++ N ++  + +CG M DA  +F+ M  ++
Sbjct: 265 ILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKD 324

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLF-------------------------------LDLWE 224
           +VS N ++ G   SG +  AF LF                               LD ++
Sbjct: 325 VVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQ 384

Query: 225 EF----SDCGSRTFATMIRASAGLELISVGKQLHSCALK------------MGFGDNVFV 268
           +     S+  S T  +++ A A L  +S G + H+ +LK             G G+++ V
Sbjct: 385 QMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVV 444

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMS--EKTTVGWNTIIAGYALHGYSEEALDLYYEM--R 324
             ALIDMYSKC S + A+ +F+ +   E+  V W  +I GYA +G S +AL L+ EM  +
Sbjct: 445 HNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISK 504

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG---FGLDIVANSALVDFYSKWG 381
              V  + +T S I+  C  L+SL   KQ HA + RH      +  VAN  L+D YSK G
Sbjct: 505 PYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVAN-CLIDMYSKCG 563

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            ++ AR+VFD M  +N +SW ++++GYG HGRG+EA+++F++M   G  P+ ++FL +L 
Sbjct: 564 DVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLY 623

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           ACS SG+ ++G + F  M  D+ +   A HYAC+I+LL R G LD+A+  I+  P + + 
Sbjct: 624 ACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSA 683

Query: 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            +W ALL+ACRV+ N+EL ++A  KL  M+ E   +Y ++ NIY ++ + K+ A + + +
Sbjct: 684 AIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLM 743

Query: 562 RRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLL 621
           ++ G++  P CSW++ KK    F  GD+SH  + EIY  ++R++  I   GYVPE    L
Sbjct: 744 KKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFAL 803

Query: 622 PDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGRE 680
            DVD++E+  +L+ HSEKLA+A+GL+ TS   P++I ++ R+C DCH+A   I+ +   E
Sbjct: 804 HDVDDEEKNNLLTEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHE 863

Query: 681 IVVRDASRFHHFKDGMCSCGDYW 703
           I+VRD+SRFHHFK+G CSCG YW
Sbjct: 864 IIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 147/613 (23%), Positives = 250/613 (40%), Gaps = 135/613 (22%)

Query: 125 GFDVGSSTYDALISACIGLRSIREV-KRVFSY--------MLSTGFEP---DLYMRNR-- 170
           G DV  + + +L+  C  + ++R++ +++ +Y        +LS    P     Y+  +  
Sbjct: 26  GRDVSPTHFASLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSL 85

Query: 171 ---VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
              V+  ++ CG   DA  + + +     V  N+++   I+ G    A  +   +    +
Sbjct: 86  GTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGT 145

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
                T    ++A   L     G   H      GF  NVFV  AL+ MYS+ GS+EDA  
Sbjct: 146 KPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASL 205

Query: 288 VFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEM------RDSGVKMDHFTFSMI 338
           VFDE++ K     + WN+I+A +        ALDL+ EM      + +  + D  +   I
Sbjct: 206 VFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNI 265

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C  L +L   K+ H+  +R+G   D    +AL+D Y+K G ++DA +VF+ M  K+V
Sbjct: 266 LPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDV 325

Query: 399 ISWNAL-----------------------------------IAGYGNHGRGEEAVELFEQ 423
           +SWNA+                                   IAGY   G G+EA++ F+Q
Sbjct: 326 VSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQ 385

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWE----------------------------- 454
           M+L G  PN VT +++LSAC+  G   +G E                             
Sbjct: 386 MILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVH 445

Query: 455 ------------------IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR--- 493
                             IF S+ R  +     + +  MI    + G  ++A  L     
Sbjct: 446 NALIDMYSKCRSFKAARTIFNSIPRRER---NVVTWTVMIGGYAQYGDSNDALKLFSEMI 502

Query: 494 GAPFKTTKNMW--AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV---LLNIYNSS 548
             P+    N +  + +L AC    +L +GK     +      + S Y V   L+++Y+  
Sbjct: 503 SKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKC 562

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           G +  A  V  ++ ++        SW  +       +SG   H + KE     D+M    
Sbjct: 563 GDVDTARNVFDSMPKRN-----EVSWTSM-------MSGYGMHGRGKEALDIFDKMQ--- 607

Query: 609 SKHGYVPEEKTLL 621
            K G+VP++ + L
Sbjct: 608 -KAGFVPDDISFL 619



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 53/217 (24%), Positives = 102/217 (47%), Gaps = 19/217 (8%)

Query: 112 EALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG-FEPDLY-MR 168
           +AL+LF E++         + T   ++ AC  L S+R  K++ +Y+     +E  +Y + 
Sbjct: 493 DALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVA 552

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N ++ M+ +CG +  AR +FD MP+RN VS   +++G    G   EA    LD++++   
Sbjct: 553 NCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEA----LDIFDKMQK 608

Query: 229 CG----SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS----CALIDMYSKCG 280
            G      +F  ++ A +   ++  G       ++  +G  V  S      +ID+ ++ G
Sbjct: 609 AGFVPDDISFLVLLYACSHSGMVDQGLDYFDI-MRSDYG--VIASAQHYACVIDLLARSG 665

Query: 281 SIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEA 316
            ++ A     EM  E +   W  +++   +H   E A
Sbjct: 666 RLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELA 702


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/605 (35%), Positives = 352/605 (58%), Gaps = 3/605 (0%)

Query: 101  IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
            I  LV      EAL LF+ ++ +        T  +++ AC  L  ++  K +  + +   
Sbjct: 402  IAALVQTGYPEEALSLFQEMQNQK-MKPNRVTLMSILPACADLSLLKLGKSIHCFTVKAD 460

Query: 161  FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
             + DL     ++ M+ +CG    A   F+ M  R++V+ N +I G    GD   A  +F 
Sbjct: 461  MDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFY 520

Query: 221  DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
             L     +  + T   ++ A A L  +  G  +H   +K+GF  +  V  ALIDMY+KCG
Sbjct: 521  KLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCG 580

Query: 281  SIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
            S+  A+ +F++    K  V WN IIA Y  +G+++EA+  +++MR      +  TF  ++
Sbjct: 581  SLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVL 640

Query: 340  RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
                 LA+       HA +++ GF  + +  ++L+D Y+K G+++ +  +F++M  K+ +
Sbjct: 641  PAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTV 700

Query: 400  SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
            SWNA+++GY  HG G+ A+ LF  M  + ++ + V+F++VLSAC  +GL E G +IF SM
Sbjct: 701  SWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSM 760

Query: 460  SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
            S  + IKP   HYACM++LLGR GL DE    I+  P +    +W ALL +CR++ N++L
Sbjct: 761  SDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKL 820

Query: 520  GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
            G+ A + L  +EP   +++VVL +IY  SG+  +A +    +   GL+  P CSW+E+K 
Sbjct: 821  GEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKN 880

Query: 580  QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEK 638
            + H F  GD+SH Q + ++   + ++ ++ K GYVP+   +L +V+E+++ +  Y HSE+
Sbjct: 881  KVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSER 940

Query: 639  LAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCS 698
            LA+ F L+NT   + +QIV++ R+C DCH   K I+ +T R I+VRDA+RFHHF+DG+CS
Sbjct: 941  LAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICS 1000

Query: 699  CGDYW 703
            C DYW
Sbjct: 1001 CNDYW 1005



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 224/461 (48%), Gaps = 7/461 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N  + E LELF+ ++  G   +   +  +   A      + + K +    L    + D+ 
Sbjct: 307 NGCFVEVLELFDKMKL-GNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDIL 365

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   +++M+ +CG    A++LF  +  R+LV+ + IIA ++ +G   EA  LF ++  + 
Sbjct: 366 VATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQK 425

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 T  +++ A A L L+ +GK +H   +K     ++    AL+ MY+KCG    A 
Sbjct: 426 MKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAAL 485

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
             F+ MS +  V WN++I GYA  G    A+D++Y++R S +  D  T   ++  C  L 
Sbjct: 486 TTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLN 545

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALI 405
            L+     H  +V+ GF  D    +AL+D Y+K G +  A  +F+K    K+ ++WN +I
Sbjct: 546 DLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVII 605

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
           A Y  +G  +EA+  F QM L    PN VTF++VL A +       G   F +       
Sbjct: 606 AAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGF 664

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFA 523
               +    +I++  + G LD +  L      K T + W A+L+   V+G+ +  +  F+
Sbjct: 665 LSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVS-WNAMLSGYAVHGHGDRAIALFS 723

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
             +   ++ + +S +V +L+    +G ++E  ++  ++  K
Sbjct: 724 LMQESQVQIDSVS-FVSVLSACRHAGLVEEGRKIFHSMSDK 763



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 186/357 (52%), Gaps = 3/357 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I     +K+Y EALE++  +  E G +    T+  ++ AC G  +++E       +  
Sbjct: 99  SMIRAYTRSKQYNEALEMYYCM-VEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDR 157

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G E D+++   ++ M+ + G +  AR +FD+MP+R++V+ N +IAG+  S D  EA   
Sbjct: 158 RGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDF 217

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F  +     +  S +   +      L  I + + +H    +  F   V  S  LID+YSK
Sbjct: 218 FRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLIDLYSK 275

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG ++ A+ VFD+M ++  V W T++AGYA +G   E L+L+ +M+   V+++  +    
Sbjct: 276 CGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSA 335

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
                    LE  K+ H   ++     DI+  + L+  Y+K G  E A+ +F  +  +++
Sbjct: 336 FLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDL 395

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           ++W+A+IA     G  EEA+ LF++M    M+PN VT +++L AC+   L + G  I
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSI 452



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 207/424 (48%), Gaps = 20/424 (4%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPD---LYMRNRVLLMHVRCGMMIDARRLFD 189
           Y  L+S+C   + +  + ++ + ++ +GF+      ++ N   L H +C +   AR +FD
Sbjct: 35  YPRLLSSC---KHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFH-KCDL---ARSVFD 87

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
             P  + +  N +I     S  Y EA  ++  + E+  +    TF  +++A  G   +  
Sbjct: 88  STPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQE 147

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G   H    + G   +VF+   L+DMYSK G ++ A+ VFD+M ++  V WN +IAG + 
Sbjct: 148 GVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQ 207

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
                EA+D +  M+  GV+    +   +     +L+++E  +  H  + R  F   +  
Sbjct: 208 SEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAV-- 265

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
           ++ L+D YSK G ++ AR VFD+M+ ++ +SW  ++AGY ++G   E +ELF++M L  +
Sbjct: 266 SNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV 325

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
           R N V+ ++   A + +   E+G EI    +   +I    +    ++ +  + G  ++A 
Sbjct: 326 RINKVSAVSAFLAAAETIDLEKGKEI-HGCALQQRIDSDILVATPLMVMYAKCGETEKAK 384

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
            L  G   +     W+A++ A    G  E  L  F   +   M+P    N V L++I  +
Sbjct: 385 QLFWGLQGRDLV-AWSAIIAALVQTGYPEEALSLFQEMQNQKMKP----NRVTLMSILPA 439

Query: 548 SGKL 551
              L
Sbjct: 440 CADL 443


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 201/534 (37%), Positives = 330/534 (61%), Gaps = 1/534 (0%)

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           +L M+ +CG + DAR  F+ +P  +++  + +I+    S    +AF LFL L        
Sbjct: 285 LLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPN 344

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             + +++++A   +  +  GKQ+H+ A+K+G   ++FV  AL+D Y+KC  ++ +  +F 
Sbjct: 345 EYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFS 404

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            + +   V WNTI+ G++  G  EEAL ++ EM+ + +     T+S ++R C   AS+ H
Sbjct: 405 SLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRH 464

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
           A Q H  + +  F  D V  ++L+D Y+K G I DA  VF  ++ +++ISWNA+I+GY  
Sbjct: 465 AGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYAL 524

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           HG+  +A+ELF++M  + +  N +TF+A+LS C  +GL   G  +F SM  DH IKP   
Sbjct: 525 HGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSME 584

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HY C++ LLGR G L++A   I   P   +  +W ALL++C ++ N+ LG+F+AEK+  +
Sbjct: 585 HYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEI 644

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           EP+  + YV+L N+Y ++G L + A + +++R  G+R +P  SW+E+K + H F  G   
Sbjct: 645 EPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVD 704

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTS 649
           H   + I   ++ + L+ S+ GY+P+   +L DVD EQ+ R+L  HSE+LA+A+GL+ T 
Sbjct: 705 HPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTP 764

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              P++I+++ R C DCH A  +I+ +  REI+VRD +RFHHF+DG CSCGDYW
Sbjct: 765 PGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 150/308 (48%), Gaps = 3/308 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I +   + +  +A ELF  L           +  +++ AC  +  +   K++ ++ +  G
Sbjct: 317 ISRYAQSNQNEQAFELFLRL-MRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIG 375

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            E DL++ N ++  + +C  M  + ++F  + + N VS N I+ G   SG   EA  +F 
Sbjct: 376 HESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFC 435

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           ++      C   T+++++RA A    I    Q+H    K  F ++  +  +LID Y+KCG
Sbjct: 436 EMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCG 495

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            I DA  VF  + E+  + WN II+GYALHG + +AL+L+  M  S V+ +  TF  ++ 
Sbjct: 496 YIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLS 555

Query: 341 ICTRLASLEHAKQAHAGL-VRHGFGLDIVANSALVDFYSKWGRIEDA-RHVFDKMLCKNV 398
           +C     + H       + + HG    +   + +V    + GR+ DA + + D     + 
Sbjct: 556 VCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSA 615

Query: 399 ISWNALIA 406
           + W AL++
Sbjct: 616 MVWRALLS 623



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 124/513 (24%), Positives = 216/513 (42%), Gaps = 85/513 (16%)

Query: 137 ISACIGLRSIREVKRVFSYMLSTGF--EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +  CI     R  + V  +++  G     DL+  N +L M+ + G +  ARRLFD MPER
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPER 125

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           N+VS   ++      GD+  A  LF  L  E  +       TM++ +  ++   +   +H
Sbjct: 126 NMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVH 185

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           SCA K+G   N FV   LID YS C  + DA+ VF+ +  K  V W  +++ Y+ +   E
Sbjct: 186 SCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPE 245

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS--- 371
            A                         C +  SL     A  G+  HG  +  + ++   
Sbjct: 246 NAFR-----------------------CAQSCSLLAISCARQGI--HGCAIKTLNDTEPH 280

Query: 372 ---ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
              AL+D Y+K G I+DAR  F+ +   +VI  + +I+ Y    + E+A ELF +++ + 
Sbjct: 281 VGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSS 340

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIF-------------------------QSMSRDH 463
           + PN  +  +VL AC+     + G +I                            M    
Sbjct: 341 VLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSL 400

Query: 464 KI-----KPRAMHYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWAALLTACRVNG 515
           KI         + +  ++    + GL +EA ++   ++ A    T+  ++++L AC    
Sbjct: 401 KIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTA 460

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVV----LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           ++   + A +    +E    +N  V    L++ Y   G +++A +V + L  + +     
Sbjct: 461 SI---RHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDI----- 512

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
            SW       +  +SG   H Q  +     DRM
Sbjct: 513 ISW-------NAIISGYALHGQAADALELFDRM 538



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 109/486 (22%), Positives = 213/486 (43%), Gaps = 59/486 (12%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           +  A  LF  L +EG  +V       ++   I + +      V S     G + + ++ +
Sbjct: 143 FEAAAALFRRLRWEG-HEVNQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGS 201

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++  +  C ++ DA  +F+ +  ++ V    +++       Y E            +DC
Sbjct: 202 GLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSC------YSE------------NDC 243

Query: 230 GSRTFATMIRASAGLELISVGKQ-LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               F      S  L  IS  +Q +H CA+K        V  AL+DMY+KCG I+DA+  
Sbjct: 244 PENAFRCA--QSCSLLAISCARQGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLA 301

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F+ +     +  + +I+ YA    +E+A +L+  +  S V  + ++ S +++ CT +  L
Sbjct: 302 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQL 361

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
           +  KQ H   ++ G   D+   +AL+DFY+K   ++ +  +F  +   N +SWN ++ G+
Sbjct: 362 DFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGF 421

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD------ 462
              G GEEA+ +F +M    M    VT+ +VL AC+ +       +I  S+ +       
Sbjct: 422 SQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDT 481

Query: 463 ------------------------HKIKPRAMHYACMIE---LLGREGLLDEAFALIRGA 495
                                   H ++   + +  +I    L G+     E F  +  +
Sbjct: 482 VIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKS 541

Query: 496 PFKTTKNMWAALLTACRVNG--NLELGKFAAEKL-YGMEPEKLSNYVVLLNIYNSSGKLK 552
             ++    + ALL+ C   G  N  L  F + ++ +G++P  + +Y  ++ +   +G+L 
Sbjct: 542 NVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKP-SMEHYTCIVRLLGRAGRLN 600

Query: 553 EAAEVI 558
           +A + I
Sbjct: 601 DALQFI 606


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/606 (37%), Positives = 352/606 (58%), Gaps = 2/606 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I  LV N  Y +++++F+ +  +G   + S+T   ++ A   ++ ++    +    L 
Sbjct: 174 TMITGLVRNCCYDDSVQVFKDMVAQG-VRLDSTTVATVLPAVAEMQEVKVGMGIQCLALK 232

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF  D Y+   ++ +  +C  +  AR LF  + + +LVS N +I+G   +G+   A   
Sbjct: 233 LGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKY 292

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F +L        S T   +I  S+    + +   +    +K G      VS AL  +YS+
Sbjct: 293 FRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSR 352

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
              I+ A+ +FDE SEKT   WN +I+GYA  G +E A+ L+ EM  +    +  T + I
Sbjct: 353 LNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSI 412

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C +L +L   K  H  +       +I  ++AL+D Y+K G I +A  +FD    KN 
Sbjct: 413 LSACAQLGALSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNT 472

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           ++WN +I GYG HG G+EA++LF +ML  G +P+ VTFL+VL ACS +GL   G EIF +
Sbjct: 473 VTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHA 532

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M   ++I+P A HYACM+++LGR G L++A   IR  P +    +W  LL AC ++ +  
Sbjct: 533 MVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTN 592

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           L + A+E+L+ ++P  +  YV+L NIY+      +AA V   ++++ L   P C+ IEV 
Sbjct: 593 LARVASERLFELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVN 652

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVL-SYHSE 637
             PHVF+ GD+SH QT  IY K++ +  ++ + GY  E  T L DV+E+E+ ++ + HSE
Sbjct: 653 GTPHVFVCGDRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSE 712

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+AFGLI T   T ++I+++ R+C DCH A K I+ +T R IVVRDA+RFHHFKDG+C
Sbjct: 713 KLAIAFGLITTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGIC 772

Query: 698 SCGDYW 703
           SCGDYW
Sbjct: 773 SCGDYW 778



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 211/407 (51%), Gaps = 5/407 (1%)

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           GF+ +L++ + ++ ++ +   +  AR++FD+MP+R+ V  N +I G++ +  Y ++  +F
Sbjct: 133 GFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVF 192

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
            D+  +     S T AT++ A A ++ + VG  +   ALK+GF  + +V   LI ++SKC
Sbjct: 193 KDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKC 252

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
             ++ A+ +F  + +   V +N +I+G++ +G +E A+  + E+  SG ++   T   +I
Sbjct: 253 EDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLI 312

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
            + +    L  A       V+ G  L    ++AL   YS+   I+ AR +FD+   K V 
Sbjct: 313 PVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVA 372

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           +WNA+I+GY   G  E A+ LF++M+     PN VT  ++LSAC++ G    G  + Q +
Sbjct: 373 AWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQ-L 431

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG-NLE 518
            +   ++        +I++  + G + EA  L      K T   W  ++    ++G   E
Sbjct: 432 IKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVT-WNTMIFGYGLHGYGDE 490

Query: 519 LGKFAAEKLY-GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
             K   E L+ G +P  ++ ++ +L   + +G ++E  E+   +  K
Sbjct: 491 ALKLFNEMLHLGFQPSSVT-FLSVLYACSHAGLVREGDEIFHAMVNK 536



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 114/474 (24%), Positives = 209/474 (44%), Gaps = 44/474 (9%)

Query: 127 DVGSSTYDALIS-ACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
           D+  +T  ALIS AC    +   +    + ++  G++ DL    ++       G    AR
Sbjct: 5   DISRNTLLALISKAC----TFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGATRHAR 60

Query: 186 RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
            LF  +P+ ++   N++I G   S D          L        + T+A  I AS    
Sbjct: 61  ALFFSVPKPDIFLFNVLIKGFSFSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPDDN 120

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
           L   G  LH+ A+  GF  N+FV+ AL+D+Y K   +  A+ VFD+M ++ TV WNT+I 
Sbjct: 121 L---GMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMIT 177

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
           G   +   ++++ ++ +M   GV++D  T + ++     +  ++         ++ GF  
Sbjct: 178 GLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHF 237

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           D    + L+  +SK   ++ AR +F  +   +++S+NALI+G+  +G  E AV+ F ++L
Sbjct: 238 DDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELL 297

Query: 426 LNGMRPNHVTFLAVLS----------ACSRSGLSERGWEIFQ-----------------S 458
           ++G R +  T + ++           AC   G   +   I Q                  
Sbjct: 298 VSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEID 357

Query: 459 MSR---DHKIKPRAMHYACMIELLGREGLLDEAFALIR---GAPFKTTKNMWAALLTACR 512
           ++R   D   +     +  MI    + GL + A +L +      F        ++L+AC 
Sbjct: 358 LARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACA 417

Query: 513 VNGNLELGKFAAEKLYGMEPEKLSNYV--VLLNIYNSSGKLKEAAEVIRTLRRK 564
             G L  GK   + +     E+ + YV   L+++Y   G + EA+++      K
Sbjct: 418 QLGALSFGKSVHQLIKSKNLEQ-NIYVSTALIDMYAKCGNISEASQLFDLTSEK 470


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/556 (39%), Positives = 347/556 (62%), Gaps = 3/556 (0%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           K++   +L  GFE D+++   ++ M+ R G++ DAR+LFD+MP R+  S N +I+G   +
Sbjct: 14  KKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQN 73

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
           G+  EA  +  ++  E     + T A+++   A +  I  GK +H   +K G    +FVS
Sbjct: 74  GNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVS 133

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGV 328
            ALI+MY+K GS+  AQ VF  +  K  V WNT+I GYA +G + EA+++Y  M +   +
Sbjct: 134 NALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEI 192

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
             +  T+  I+   + + +L+   + H  ++++    D+   + L+D Y K G+++DA  
Sbjct: 193 IPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAIS 252

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           +F ++  KN + WNA+I+ YG HG GE+A+ELF +M    ++P+H+TF+++LSACS SGL
Sbjct: 253 LFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGL 312

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
                  F  M  ++ IKP   HY CM++L GR G L+ AF  I+  P +   + W ALL
Sbjct: 313 VSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALL 372

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
            ACR++GN+ELGK A+E+L+ ++ E +  YV+L NIY + GK +   +V    R +GLR 
Sbjct: 373 NACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRK 432

Query: 569 LPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE 628
            P  S I +  +  VF +G+Q+H + +EIYR++  +  +I   GYVP+   +L DV+E E
Sbjct: 433 NPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFCFVLQDVEEDE 492

Query: 629 -QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDAS 687
            + +L  HSE+LA+A+G+I+TS  TP++I ++ R+C DCH   K I+++T REI+VRD+S
Sbjct: 493 KEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFISIITEREIIVRDSS 552

Query: 688 RFHHFKDGMCSCGDYW 703
           RFHHFK G CSCGDYW
Sbjct: 553 RFHHFKGGTCSCGDYW 568



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 180/308 (58%), Gaps = 7/308 (2%)

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           GK++H   LK+GF  +VFV+ +L+ MYS+ G + DA+ +FD+M  +    WN +I+GY  
Sbjct: 13  GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQ 72

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +G + EALD+  EMR  GVKMD  T + ++ +C ++  +   K  H  +++HG   ++  
Sbjct: 73  NGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFV 132

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN-G 428
           ++AL++ Y+K+G +  A+ VF  +L K+V+SWN LI GY  +G   EA+E++  M  +  
Sbjct: 133 SNALINMYAKFGSLGHAQKVFG-LLIKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEE 191

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           + PN  T++++L A S  G  ++G  I   + ++  +        C+I++ G+ G LD+A
Sbjct: 192 IIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKN-CLYSDVFVGTCLIDMYGKCGKLDDA 250

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYN 546
            +L    P K +   W A+++   V+G+ E  L  F   K   ++P+ ++ +V LL+  +
Sbjct: 251 ISLFYQVPRKNSVP-WNAMISCYGVHGDGEKALELFREMKAERVKPDHIT-FVSLLSACS 308

Query: 547 SSGKLKEA 554
            SG + +A
Sbjct: 309 HSGLVSDA 316



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/210 (20%), Positives = 96/210 (45%), Gaps = 2/210 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N    EA+E++ ++E          T+ +++ A   + ++++  R+   ++      D++
Sbjct: 173 NGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVF 232

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   ++ M+ +CG + DA  LF ++P +N V  N +I+     GD  +A  LF ++  E 
Sbjct: 233 VGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAER 292

Query: 227 SDCGSRTFATMIRASAGLELISVGKQ-LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                 TF +++ A +   L+S  +   +    + G   ++     ++D++ + G +E A
Sbjct: 293 VKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMA 352

Query: 286 QGVFDEMS-EKTTVGWNTIIAGYALHGYSE 314
                +M  +     W  ++    +HG  E
Sbjct: 353 FNFIKKMPIQPDASAWGALLNACRIHGNIE 382


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/531 (38%), Positives = 327/531 (61%), Gaps = 2/531 (0%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+ +CG + DAR +FD+MP R++VS   +IAG   +    EA  L  D+          T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
           F ++++A+      S+G+Q+H+ A+K  + ++V+V  AL+DMY++C  ++ A  VFD + 
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
            K  V WN +IAG+A     E  L  + EM+ +G    HFT+S +     R+ +LE  + 
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRW 180

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            HA L++ G  L     + ++  Y+K G + DAR VFD+M  +++++WN ++     +G 
Sbjct: 181 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGL 240

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
           G+EAV  FE++   G++ N +TFL+VL+ACS  GL + G   F  M +D+ ++P   HY 
Sbjct: 241 GKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFD-MMKDYNVQPEIDHYV 299

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533
             ++LLGR GLL EA   +   P + T  +W ALL ACR++ N ++G++AA+ ++ ++P+
Sbjct: 300 SFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPD 359

Query: 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQ 593
                V+L NIY S+GK  +AA V + ++  G++  PACSW++++   H+F++ D +H +
Sbjct: 360 DTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPK 419

Query: 594 TKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWT 652
           + +IYR  + + + I K GYVP    +L  ++EQE+   L YHSEK+A+AF LIN     
Sbjct: 420 SGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGA 479

Query: 653 PLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++I+++ RIC DCH+A K ++ V  REIVVRD +RFHHF +G CSCGDYW
Sbjct: 480 SIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 121/248 (48%), Gaps = 1/248 (0%)

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           ++ D+Y+ + +L M+ RC  M  A  +FD +  +N VS N +IAG     D     + F 
Sbjct: 89  WDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFA 148

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           ++          T+++M  A A +  +  G+ +H+  +K G     FV   ++ MY+K G
Sbjct: 149 EMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSG 208

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           S+ DA+ VFD M ++  V WNT++   A +G  +EA+  + E+R  G++++  TF  ++ 
Sbjct: 209 SMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLT 268

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR-HVFDKMLCKNVI 399
            C+    ++  K     +  +    +I    + VD   + G +++A   VF   +     
Sbjct: 269 ACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAA 328

Query: 400 SWNALIAG 407
            W AL+  
Sbjct: 329 VWGALLGA 336



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 9/191 (4%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           GF     TY ++ SA   + ++ + + V ++++ +G +   ++ N +L M+ + G M+DA
Sbjct: 154 GFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDA 213

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRA 240
           R++FD M +R+LV+ N ++  +   G   EA   F    EE   CG +    TF +++ A
Sbjct: 214 RKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHF----EEIRKCGIQLNQITFLSVLTA 269

Query: 241 SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ-GVFDEMSEKTTVG 299
            +   L+  GK              +    + +D+  + G +++A   VF    E T   
Sbjct: 270 CSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAV 329

Query: 300 WNTIIAGYALH 310
           W  ++    +H
Sbjct: 330 WGALLGACRMH 340


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/619 (37%), Positives = 360/619 (58%), Gaps = 8/619 (1%)

Query: 88  TQMKKPSAGICSQIEKLVLNKRY-REALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
            Q+  P+   C+ I +   NK   R+A+  ++++  +G  D    T+ +L  +C     +
Sbjct: 98  NQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQG-LDPDRFTFPSLFKSC---GVL 153

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
            E K++  +    GF  D Y++N ++ M+  CG ++ AR++FD+M  +++VS   +I   
Sbjct: 154 CEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAY 213

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
                  EA  LF  +          T   ++ A A    +   KQ+H    + G G + 
Sbjct: 214 AQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHT 273

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
            ++ AL+D+Y KCG    A+ +F++M EK    WN +I G+      EEAL L+ EM+ S
Sbjct: 274 VLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLS 333

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           GVK D  T + ++  CT L +LE  K  H  + +    +D+   +ALVD Y+K G IE A
Sbjct: 334 GVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESA 393

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
             VF +M  K+V++W ALI G    G+G +A+ELF +M ++ ++P+ +TF+ VL+ACS +
Sbjct: 394 MRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHA 453

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           GL   G   F SM   + I+P   HY CM+++LGR G + EA  LI+  P      +   
Sbjct: 454 GLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVG 513

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR-RKG 565
           LL+ACR++GNL + + AA++L  ++P+    YV+L NIY SS K  EAA+ +R L   + 
Sbjct: 514 LLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIY-SSMKNWEAAKKMRELMVERN 572

Query: 566 LRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD 625
           ++  P CS IEV    H F+ GD SH Q+ EIY  +D MM  +   GYVP++  +L D+D
Sbjct: 573 IKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMD 632

Query: 626 EQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVR 684
           E+E +  LS HSEKLA+AFGL++T+  TP+++V++ R+C DCH+A+K I+ V  REI+VR
Sbjct: 633 EKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVR 692

Query: 685 DASRFHHFKDGMCSCGDYW 703
           D +RFHHF  G CSC D+W
Sbjct: 693 DRNRFHHFTKGSCSCRDFW 711


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/599 (36%), Positives = 357/599 (59%), Gaps = 5/599 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD---LY 166
           Y  A+     ++  GG    +ST  +L+       ++ +   + +Y L    E +   + 
Sbjct: 182 YHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVL 241

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD-LWEE 225
           +   +L M+ +C  ++ A R+F  MP RN V+ + +I G +      EAF LF D L E 
Sbjct: 242 IGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEG 301

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                + + A+ +R  A L  + +G QLH+   K G   ++  S +L+ MY+K G I +A
Sbjct: 302 LCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEA 361

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
              FDE++ K T+ +  +++G   +G +EEA  ++ +M+   ++ D  T   +I  C+ L
Sbjct: 362 TMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHL 421

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           A+L+H K +H  ++  G  L+    ++L+D Y+K G+I+ +R VFDKM  ++V+SWN +I
Sbjct: 422 AALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMI 481

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
           AGYG HG G+EA  LF  M   G  P+ VTF+ +++ACS SGL   G   F +M+  + I
Sbjct: 482 AGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGI 541

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
            PR  HY CM++LL R GLLDEA+  I+  P K    +W ALL ACR++ N++LGK  + 
Sbjct: 542 LPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSR 601

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
            +  + PE   N+V+L NI++++G+  EAAEV    + KG +  P  SWIE+    H F+
Sbjct: 602 IIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFV 661

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFG 644
            GDQSH  +++IY ++D +M++I K GY  +   +L D+ +E++++ L YHSEKLA+AFG
Sbjct: 662 GGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFG 721

Query: 645 LINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +++ ++   + + ++ R+C DCH AIK + +V  R I+VRD +RFHHFK+G CSCG++W
Sbjct: 722 VLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 121/475 (25%), Positives = 224/475 (47%), Gaps = 42/475 (8%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  ++ AC  L  +R  + + ++  + G   DL++   ++ +++RC     AR +F +M
Sbjct: 102 TFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKM 161

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVG 250
           P R++V+ N ++AG  + G Y  A    LD+ +       + T  +++   A    +  G
Sbjct: 162 PMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQG 221

Query: 251 KQLHSCALKMGFGDN---VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
             +H+  L+     N   V +  AL+DMY+KC  +  A  VF  M  +  V W+ +I G+
Sbjct: 222 TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGF 281

Query: 308 ALHGYSEEALDLYYEMRDSGV-KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
            L     EA +L+ +M   G+  +   + +  +R+C  LA L    Q HA + + G   D
Sbjct: 282 VLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHAD 341

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           + A+++L+  Y+K G I +A   FD++  K+ IS+ AL++G   +G+ EEA  +F++M  
Sbjct: 342 LTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQA 401

Query: 427 NGMRPNHVTFLAVLSACS-----RSGLSERGWEIFQSMSRD------------------- 462
             M P+  T ++++ ACS     + G    G  I + ++ +                   
Sbjct: 402 CNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDL 461

Query: 463 -----HKIKPR-AMHYACMIELLGREGLLDEAFALIRGAP---FKTTKNMWAALLTACRV 513
                 K+  R  + +  MI   G  GL  EA  L  G     F      +  L+ AC  
Sbjct: 462 SRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSH 521

Query: 514 NGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
           +G +  GK   + +   YG+ P ++ +Y+ ++++    G L EA + I+++  K 
Sbjct: 522 SGLVTEGKHWFDTMTHKYGILP-RMEHYICMVDLLARGGLLDEAYQFIQSMPLKA 575



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 167/351 (47%), Gaps = 8/351 (2%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   VL  R  EA  LF+ +  EG   + +++  + +  C  L  +    ++ + +  +G
Sbjct: 278 IGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSG 337

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              DL   N +L M+ + G++ +A   FDE+  ++ +S   +++G + +G   EAFL+F 
Sbjct: 338 IHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFK 397

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +     +    T  ++I A + L  +  GK  H   +  G      +  +LIDMY+KCG
Sbjct: 398 KMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCG 457

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            I+ ++ VFD+M  +  V WNT+IAGY +HG  +EA  L+  M++ G   D  TF  +I 
Sbjct: 458 KIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIA 517

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKMLCK-N 397
            C+    +   K     +  H +G+   +     +VD  ++ G +++A      M  K +
Sbjct: 518 ACSHSGLVTEGKHWFDTMT-HKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKAD 576

Query: 398 VISWNALIAG---YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           V  W AL+     + N   G++   + +++   G   N V    + SA  R
Sbjct: 577 VRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGT-GNFVLLSNIFSAAGR 626



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 173/369 (46%), Gaps = 9/369 (2%)

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L  H+  G +  AR++FD +P  +  + N +I      G +  A  L+  +         
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            TF  +++A + L  +  G+ +H+ A   G   ++FVS ALID+Y +C     A+ VF +
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSMIIRICTRLASLEH 350
           M  +  V WN ++AGYA HG    A+    +M+D  G++ +  T   ++ +  +  +L  
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 351 AKQAHAGLVRHGFGLD---IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
               HA  +R     +   ++  +AL+D Y+K  ++  A  VF  M  +N ++W+ALI G
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGG 280

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLA-VLSACSRSGLSERGWEIFQSMSRDHKIK 466
           +    R  EA  LF+ ML+ G+     T +A  L  C+       G ++   +++   I 
Sbjct: 281 FVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKS-GIH 339

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
                   ++ +  + GL++EA         K T + + ALL+ C  NG  E      +K
Sbjct: 340 ADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGCVQNGKAEEAFLVFKK 398

Query: 527 LYG--MEPE 533
           +    MEP+
Sbjct: 399 MQACNMEPD 407


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/599 (36%), Positives = 357/599 (59%), Gaps = 5/599 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD---LY 166
           Y  A+     ++  GG    +ST  +L+       ++ +   + +Y L    E +   + 
Sbjct: 182 YHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVL 241

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD-LWEE 225
           +   +L M+ +C  ++ A R+F  MP RN V+ + +I G +      EAF LF D L E 
Sbjct: 242 IGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEG 301

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                + + A+ +R  A L  + +G QLH+   K G   ++  S +L+ MY+K G I +A
Sbjct: 302 LCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEA 361

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
              FDE++ K T+ +  +++G   +G +EEA  ++ +M+   ++ D  T   +I  C+ L
Sbjct: 362 TMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHL 421

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           A+L+H K +H  ++  G  L+    ++L+D Y+K G+I+ +R VFDKM  ++V+SWN +I
Sbjct: 422 AALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMI 481

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
           AGYG HG G+EA  LF  M   G  P+ VTF+ +++ACS SGL   G   F +M+  + I
Sbjct: 482 AGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGI 541

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
            PR  HY CM++LL R GLLDEA+  I+  P K    +W ALL ACR++ N++LGK  + 
Sbjct: 542 LPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSR 601

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
            +  + PE   N+V+L NI++++G+  EAAEV    + KG +  P  SWIE+    H F+
Sbjct: 602 IIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFV 661

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFG 644
            GDQSH  +++IY ++D +M++I K GY  +   +L D+ +E++++ L YHSEKLA+AFG
Sbjct: 662 GGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFG 721

Query: 645 LINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +++ ++   + + ++ R+C DCH AIK + +V  R I+VRD +RFHHFK+G CSCG++W
Sbjct: 722 VLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 121/475 (25%), Positives = 224/475 (47%), Gaps = 42/475 (8%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  ++ AC  L  +R  + + ++  + G   DL++   ++ +++RC     AR +F +M
Sbjct: 102 TFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKM 161

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVG 250
           P R++V+ N ++AG  + G Y  A    LD+ +       + T  +++   A    +  G
Sbjct: 162 PMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQG 221

Query: 251 KQLHSCALKMGFGDN---VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
             +H+  L+     N   V +  AL+DMY+KC  +  A  VF  M  +  V W+ +I G+
Sbjct: 222 TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGF 281

Query: 308 ALHGYSEEALDLYYEMRDSGV-KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
            L     EA +L+ +M   G+  +   + +  +R+C  LA L    Q HA + + G   D
Sbjct: 282 VLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIHAD 341

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           + A+++L+  Y+K G I +A   FD++  K+ IS+ AL++G   +G+ EEA  +F++M  
Sbjct: 342 LTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQA 401

Query: 427 NGMRPNHVTFLAVLSACS-----RSGLSERGWEIFQSMSRD------------------- 462
             M P+  T ++++ ACS     + G    G  I + ++ +                   
Sbjct: 402 CNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDL 461

Query: 463 -----HKIKPR-AMHYACMIELLGREGLLDEAFALIRGAP---FKTTKNMWAALLTACRV 513
                 K+  R  + +  MI   G  GL  EA  L  G     F      +  L+ AC  
Sbjct: 462 SRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSH 521

Query: 514 NGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
           +G +  GK   + +   YG+ P ++ +Y+ ++++    G L EA + I+++  K 
Sbjct: 522 SGLVTEGKHWFDTMTHKYGILP-RMEHYICMVDLLARGGLLDEAYQFIQSMPLKA 575



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 167/351 (47%), Gaps = 8/351 (2%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   VL  R  EA  LF+ +  EG   + +++  + +  C  L  +    ++ + +  +G
Sbjct: 278 IGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSG 337

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              DL   N +L M+ + G++ +A   FDE+  ++ +S   +++G + +G   EAFL+F 
Sbjct: 338 IHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFK 397

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +     +    T  ++I A + L  +  GK  H   +  G      +  +LIDMY+KCG
Sbjct: 398 KMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCG 457

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            I+ ++ VFD+M  +  V WNT+IAGY +HG  +EA  L+  M++ G   D  TF  +I 
Sbjct: 458 KIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIA 517

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKMLCK-N 397
            C+    +   K     +  H +G+   +     +VD  ++ G +++A      M  K +
Sbjct: 518 ACSHSGLVTEGKHWFDTMT-HKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKAD 576

Query: 398 VISWNALIAG---YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           V  W AL+     + N   G++   + +++   G   N V    + SA  R
Sbjct: 577 VRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGT-GNFVLLSNIFSAAGR 626



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 117/480 (24%), Positives = 212/480 (44%), Gaps = 37/480 (7%)

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L  H+  G +  AR++FD +P  +  + N +I      G +  A  L+  +         
Sbjct: 41  LEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPNK 100

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            TF  +++A + L  +  G+ +H+ A   G   ++FVS ALID+Y +C     A+ VF +
Sbjct: 101 YTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAK 160

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSMIIRICTRLASLEH 350
           M  +  V WN ++AGYA HG    A+    +M+D  G++ +  T   ++ +  +  +L  
Sbjct: 161 MPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQ 220

Query: 351 AKQAHAGLVRHGFGLD---IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
               HA  +R     +   ++  +AL+D Y+K  ++  A  VF  M  +N ++W+ALI G
Sbjct: 221 GTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGG 280

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLA-VLSACSRSGLSERGWEIFQSMSRDHKIK 466
           +    R  EA  LF+ ML+ G+     T +A  L  C+       G ++   +++   I 
Sbjct: 281 FVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKS-GIH 339

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
                   ++ +  + GL++EA         K T + + ALL+ C  NG  E      +K
Sbjct: 340 ADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTIS-YGALLSGCVQNGKAEEAFLVFKK 398

Query: 527 LYG--MEPEKLSNYVVLLNIYN-----SSGKLKEAAEVIRTLRRKG------LRMLPACS 573
           +    MEP+ ++  V L+   +       GK    + +IR L  +       + M   C 
Sbjct: 399 MQACNMEPD-IATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCG 457

Query: 574 WIEVKKQP------------HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLL 621
            I++ +Q             +  ++G   H   KE       + L +   G+ P++ T +
Sbjct: 458 KIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKE----ATTLFLGMKNQGFAPDDVTFI 513


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/609 (36%), Positives = 358/609 (58%), Gaps = 40/609 (6%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR------ 185
           T+  L+ +C   ++ RE +++  ++L  G++ DLY+   ++ M+V+ G + DAR      
Sbjct: 105 TFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQS 164

Query: 186 -------------------------RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
                                    ++FDE+P +++VS N +I+G  ++G+  EA  LF 
Sbjct: 165 SHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFK 224

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           ++ +        T  +++ A A    I +G+Q+HS     GFG N+ +  ALID+Y KCG
Sbjct: 225 EMMKTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCG 284

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            +E A G+F+ +S K  + WNT+I GY      +EAL L+ EM  SG   +  T   I+ 
Sbjct: 285 EVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILP 344

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVAN-----SALVDFYSKWGRIEDARHVFDKMLC 395
            C  L ++E  +  H  + +    L  VAN     ++L+D Y+K G IE A+ VFD +L 
Sbjct: 345 ACAHLGAIEIGRWIHVYINKR---LKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILN 401

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           +++ SWNA+I G+  HGR   A ++F +M  N + P+ +TF+ +LSACS SG+ + G  I
Sbjct: 402 RSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHI 461

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F+SM  D+KI P+  HY CMI+LLG  GL  EA  +I     +    +W +LL AC++  
Sbjct: 462 FRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYA 521

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575
           N+ELG+  A+ L  +EP+   +YV+L NIY ++G+  E A++   L  KG++ +P CS I
Sbjct: 522 NVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSI 581

Query: 576 EVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSY 634
           E+    H F+ GD+ H + +EIY  ++ M + + + G+VP+   +L +++E+ ++  L +
Sbjct: 582 EIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRH 641

Query: 635 HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKD 694
           HSEKLA+AFGLI+T   T L IV++ R+C +CH A KLI+ +  REI+ RD +RFHHF+D
Sbjct: 642 HSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRD 701

Query: 695 GMCSCGDYW 703
           G+CSC DYW
Sbjct: 702 GVCSCNDYW 710



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/381 (24%), Positives = 168/381 (44%), Gaps = 81/381 (21%)

Query: 251 KQLHSCALKMGFGDNVFVSCALID---MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           + +H+  +K G  +  +    LI+   +      +  A  VF+ + E   + WNT+  G+
Sbjct: 19  RMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 78

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           AL      AL LY  M   G+  + +TF  +++ C +  +    +Q H  +++ G+ LD+
Sbjct: 79  ALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDL 138

Query: 368 VANSALVDFYSKWGRIEDARHVFDK-------------------------------MLCK 396
             +++L+  Y + GR+EDAR VFD+                               +  K
Sbjct: 139 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK 198

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           +V+SWNA+I+GY   G  +EA+ELF++M+   +RP+  T ++V+SAC++S   E G ++ 
Sbjct: 199 DVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV- 257

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
            S   DH           +I+L  + G ++ A  L  G  +K              ++ N
Sbjct: 258 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDV------------ISWN 305

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG--------LRM 568
             +G +    LY                       KEA  + + + R G        L +
Sbjct: 306 TLIGGYTHMNLY-----------------------KEALLLFQEMLRSGESPNDVTMLSI 342

Query: 569 LPACSW---IEVKKQPHVFLS 586
           LPAC+    IE+ +  HV+++
Sbjct: 343 LPACAHLGAIEIGRWIHVYIN 363


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/647 (35%), Positives = 376/647 (58%), Gaps = 41/647 (6%)

Query: 85  LPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLR 144
           L D+  +K      + +   V +    EA ++F+ +  +      S +++ L++A +   
Sbjct: 117 LFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKN-----SISWNGLLAAYVRSG 171

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
            + E +R+F     +  + +L   N ++  +V+  M+ DAR+LFD++P R+L+S N +I+
Sbjct: 172 RLEEARRLFE----SKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMIS 227

Query: 205 GMIDSGDYLEAFLLF-----------------------LD----LWEEFSDCGSRTFATM 237
           G    GD  +A  LF                       LD    +++E       ++  M
Sbjct: 228 GYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEMPQKREMSYNVM 287

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           I   A  + + +G++L     +M F  N+     +I  Y + G +  A+ +FD M ++ +
Sbjct: 288 IAGYAQYKRMDMGRELFE---EMPF-PNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDS 343

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           V W  IIAGYA +G  EEA+++  EM+  G  ++  TF   +  C  +A+LE  KQ H  
Sbjct: 344 VSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQ 403

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           +VR G+    +  +ALV  Y K G I++A  VF  +  K+++SWN ++AGY  HG G +A
Sbjct: 404 VVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQA 463

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           + +FE M+  G++P+ +T + VLSACS +GL++RG E F SM++D+ I P + HYACMI+
Sbjct: 464 LTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMID 523

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
           LLGR G L+EA  LIR  PF+     W ALL A R++GN+ELG+ AAE ++ MEP     
Sbjct: 524 LLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGM 583

Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI 597
           YV+L N+Y +SG+  + +++   +R+ G++  P  SW+EV+ + H F  GD  H +   I
Sbjct: 584 YVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRI 643

Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQI 656
           Y  ++ + L++   GYV   K +L DV+E+E++ +L YHSEKLAVAFG++      P+++
Sbjct: 644 YAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHMLKYHSEKLAVAFGILTMPSGKPIRV 703

Query: 657 VQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +++ R+C DCHNAIK I+ + GR I+VRD+ R+HHF +G+CSC DYW
Sbjct: 704 MKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHFSEGICSCRDYW 750



 Score =  106 bits (264), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 106/450 (23%), Positives = 189/450 (42%), Gaps = 73/450 (16%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           SI  V+R  +Y      +P      + +  H+R G    A  +FD MP RN VS N +I+
Sbjct: 13  SIFHVQRPTNYPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMIS 72

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
           G + +      F L  DL+++       ++  M+   A    +   + L     +     
Sbjct: 73  GYLRNA----KFSLARDLFDKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPE----K 124

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           +V    A++  Y + G +++A+ VFD M  K ++ WN ++A Y   G  EEA  L+    
Sbjct: 125 DVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKS 184

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           D                                        ++++ + L+  Y K   + 
Sbjct: 185 D---------------------------------------WELISCNCLMGGYVKRNMLG 205

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           DAR +FD++  +++ISWN +I+GY   G   +A  LFE+  +  +     T+ A++ A  
Sbjct: 206 DARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDV----FTWTAMVYAYV 261

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
           + G+ +    +F  M      + R M Y  MI    +   +D    L    PF    + W
Sbjct: 262 QDGMLDEARRVFDEMP-----QKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGS-W 315

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLRR 563
             +++    NG+L      A  L+ M P++ S ++  ++  Y  +G  +EA  ++  ++R
Sbjct: 316 NIMISGYCQNGDLA----QARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKR 371

Query: 564 KGLRM--------LPACSWI---EVKKQPH 582
            G  +        L AC+ I   E+ KQ H
Sbjct: 372 DGESLNRSTFCCALSACADIAALELGKQVH 401



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 138/322 (42%), Gaps = 33/322 (10%)

Query: 251 KQLHSCAL---------KMGFGDNVFVSCA-LIDMYSKCGSIEDAQGVFDEMSEKTTVGW 300
           +QLHS            K  F D   V C   I  + + G  + A  VFD M  + +V +
Sbjct: 8   RQLHSSIFHVQRPTNYPKPHFEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSY 67

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           N +I+GY  +     A DL+ +M       D F++++++    R   L  A+     +  
Sbjct: 68  NAMISGYLRNAKFSLARDLFDKMPHK----DLFSWNLMLTGYARNRRLRDARMLFDSMPE 123

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
                D+V+ +A++  Y + G +++AR VFD+M  KN ISWN L+A Y   GR EEA  L
Sbjct: 124 K----DVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVRSGRLEEARRL 179

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
           FE         +   +  +   C   G  +R          D       + +  MI    
Sbjct: 180 FE---------SKSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYA 230

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS-NYV 539
           ++G L +A  L   +P +     W A++ A   +G L+     A +++   P+K   +Y 
Sbjct: 231 QDGDLSQARRLFEESPVRDVFT-WTAMVYAYVQDGMLD----EARRVFDEMPQKREMSYN 285

Query: 540 VLLNIYNSSGKLKEAAEVIRTL 561
           V++  Y    ++    E+   +
Sbjct: 286 VMIAGYAQYKRMDMGRELFEEM 307



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 109/245 (44%), Gaps = 6/245 (2%)

Query: 84  SLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGL 143
           +L D   ++ S    + I     N  Y EA+ +   ++ +G   +  ST+   +SAC  +
Sbjct: 333 NLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGE-SLNRSTFCCALSACADI 391

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
            ++   K+V   ++ TG+E    + N ++ M+ +CG + +A  +F  +  +++VS N ++
Sbjct: 392 AALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDIVSWNTML 451

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ-LHSCALKMGF 262
           AG    G   +A  +F  +          T   ++ A +   L   G +  HS     G 
Sbjct: 452 AGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGTEYFHSMNKDYGI 511

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHG---YSEEALD 318
             N      +ID+  + G +E+AQ +   M  E     W  ++    +HG     E+A +
Sbjct: 512 TPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRIHGNMELGEQAAE 571

Query: 319 LYYEM 323
           + ++M
Sbjct: 572 MVFKM 576


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/609 (36%), Positives = 357/609 (58%), Gaps = 34/609 (5%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G    S T+  L+ AC   ++ RE +++  ++L  G + DLY+   ++ M+V+ G   DA
Sbjct: 98  GLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDA 157

Query: 185 RR-------------------------------LFDEMPERNLVSCNMIIAGMIDSGDYL 213
           R+                               +FDE+P +++VS N +I+G  ++G+Y 
Sbjct: 158 RKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYK 217

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA  LF ++ +        T  T++ A A    I +G+Q+HS     GFG N+ +  ALI
Sbjct: 218 EALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALI 277

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           D+Y KCG +E A G+F+ +S K  + WNT+I GY      +EAL L+ EM  SG   +  
Sbjct: 278 DLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEV 337

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN--SALVDFYSKWGRIEDARHVFD 391
           T   I+  C  L +++  +  H  + +   G+   ++  ++L+D Y+K G IE A+ VFD
Sbjct: 338 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFD 397

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
            ML +++ SWNA+I G+  HGR   A ++F +M  +G+ P+ +TF+ +LSACS SG+ + 
Sbjct: 398 SMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDL 457

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
           G  IF+SM+ D+KI P+  HY CMI+LLG  GL  EA  +I          +W +LL AC
Sbjct: 458 GRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKAC 517

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           +++GN+ELG+  A+ L  +EP+   +YV+L NIY ++G+  E A+    L  KG++ +P 
Sbjct: 518 KMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPG 577

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQR 630
           CS IE+    H F+ GD+ H + +EIY  ++ M + + + G+VP+   +L +++E+ ++ 
Sbjct: 578 CSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEG 637

Query: 631 VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFH 690
            L +HSEKLA+AFGLI+T   T L IV++ R+C +CH A KLI+ +  REI+ RD +RFH
Sbjct: 638 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFH 697

Query: 691 HFKDGMCSC 699
           HF DG+CSC
Sbjct: 698 HFXDGVCSC 706



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 141/501 (28%), Positives = 231/501 (46%), Gaps = 80/501 (15%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL---LMHVRCGMMIDARRLFDEM 191
           +L+  C  L+S+R    + + M+ TG     Y  ++++   ++      +  A  +FD +
Sbjct: 7   SLLHNCKTLQSLR---IIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSI 63

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            E NL+  N +  G   S D + A  L++ +        S TF  +++A A  +    G+
Sbjct: 64  QEPNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQ 123

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE----------------- 294
           Q+H   LK+G   +++V  +LI MY K G  EDA+ VFD+ S                  
Sbjct: 124 QIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNG 183

Query: 295 --------------KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
                         K  V WN +I+GYA  G  +EAL+L+ EM  + VK D  T   ++ 
Sbjct: 184 YIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLS 243

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C + AS+E  +Q H+ +  HGFG ++   +AL+D Y K G +E A  +F+ +  K+VIS
Sbjct: 244 ACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVIS 303

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG-W------ 453
           WN LI GY +    +EA+ LF++ML +G  PN VT L++L AC+  G  + G W      
Sbjct: 304 WNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYID 363

Query: 454 ------------------------------EIFQSMSRDHKIKPRAMHYACMIELLGREG 483
                                         ++F SM         AM +     + GR  
Sbjct: 364 KRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFG--FAMHGRAN 421

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVV 540
              + F+ +R    +     +  LL+AC  +G L+LG+     +   Y + P KL +Y  
Sbjct: 422 PAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITP-KLEHYGC 480

Query: 541 LLNIYNSSGKLKEAAEVIRTL 561
           ++++   SG  KEA E+I ++
Sbjct: 481 MIDLLGHSGLFKEAEEMINSM 501



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 163/378 (43%), Gaps = 81/378 (21%)

Query: 253 LHSCALKMGFGDNVFVSCALID---MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           +H+  +K G  +  +    LI+   +      +  A  VFD + E   + WNT+  G+AL
Sbjct: 21  IHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFRGHAL 80

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
                 AL LY  M   G+  + +TF  +++ C +  +    +Q H  +++ G  LD+  
Sbjct: 81  SSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYV 140

Query: 370 NSALVDFYSKWGRIEDARHVFDK-------------------------------MLCKNV 398
           +++L+  Y K GR EDAR VFD+                               +  K+V
Sbjct: 141 HTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDV 200

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SWNALI+GY   G  +EA+ELF++M+   ++P+  T + VLSAC++S   E G ++  S
Sbjct: 201 VSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQV-HS 259

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
              DH           +I+L  + G ++ A  L  G  +K              ++ N  
Sbjct: 260 WIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDV------------ISWNTL 307

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG--------LRMLP 570
           +G +    LY                       KEA  + + + R G        L +LP
Sbjct: 308 IGGYTHMNLY-----------------------KEALLLFQEMLRSGESPNEVTMLSILP 344

Query: 571 ACSW---IEVKKQPHVFL 585
           AC+    I++ +  HV++
Sbjct: 345 ACAHLGAIDIGRWIHVYI 362


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 238/627 (37%), Positives = 350/627 (55%), Gaps = 34/627 (5%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R +EA+ LF  +  E G    S T   +ISAC  LR +   +RV +Y+   G + +  M 
Sbjct: 212 RPKEAVSLFFEM-VEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMV 270

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N ++ M+++CG +  A+RLFDE  +RNLV  N I++     G   EA  +  ++ ++   
Sbjct: 271 NALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPR 330

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               T  + I ASA L  +  GK  H   ++ G      +   +IDMY KCG  E A  V
Sbjct: 331 PDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRV 390

Query: 289 FDEMSEKTTVGWNTIIAGYALHG-------------------------------YSEEAL 317
           FD MS KT V WN++ AG+  +G                                 E+A+
Sbjct: 391 FDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAI 450

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
           +L+ EM+  G+K D  T   I   C  L + E AK  H  + ++G   D+  N+ALVD +
Sbjct: 451 ELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMF 510

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           ++ G  + A  VF+KM  ++V +W A I      G GE A  LF QML+ G++P+ V F+
Sbjct: 511 ARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFV 570

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
            VL+ACS  G  E+G  IF S+  DH I P+  HY CM++LLGR GLL EAF LI+  P 
Sbjct: 571 QVLTACSHGGQVEQGLHIF-SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPM 629

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
           +    +W +LL ACRV+ N+E+  +AAE++  + P++   +V+L NIY S+GK  + A V
Sbjct: 630 EPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARV 689

Query: 558 IRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEE 617
              LR KG+R +P  S ++V    H F SGD+SH +   I   +  M    S  G++P+ 
Sbjct: 690 RLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDL 749

Query: 618 KTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMV 676
             +L DVDEQE+  +LS HSEKLA+AFGLI T    P+++V++ R+C DCH+  K+ +++
Sbjct: 750 SNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASII 809

Query: 677 TGREIVVRDASRFHHFKDGMCSCGDYW 703
             REI+VRD +RFH F+ G+CSC DYW
Sbjct: 810 YNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 203/435 (46%), Gaps = 55/435 (12%)

Query: 184 ARRLF-----DEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMI 238
           AR+ F     D   +  L   N +I G   +G   EA LL++ +          TF  ++
Sbjct: 79  ARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVL 138

Query: 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV 298
                +     G Q+H   +KMG  ++VF+   LI  Y++CG ++    VF+ MSE+  V
Sbjct: 139 SGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVV 198

Query: 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
            W ++I GYA     +EA+ L++EM ++G++    T   +I  C +L  L+  ++  A +
Sbjct: 199 SWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYI 258

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
              G  L+ V  +ALVD Y K G I+ A+ +FD+ + +N++ +N +++ Y   G   EA+
Sbjct: 259 GELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREAL 318

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACS----------------RSGLSERGWEIFQSMSRD 462
            + ++ML  G RP+ VT L+ +SA +                R+GL   GW+   ++  D
Sbjct: 319 AILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGL--EGWDSIGNVIID 376

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
             +K      AC +            F L+       T   W +L      NG++E    
Sbjct: 377 MYMKCGKPEMACRV------------FDLMS----NKTVVSWNSLTAGFIRNGDVE---- 416

Query: 523 AAEKLYGMEPEKLSNY-VVLLNIYNSSGKLKEAAEVIRTLRRKGLR--------MLPACS 573
           +A +++   PE+ + +   +++        ++A E+ R ++ +G++        +  AC 
Sbjct: 417 SAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACG 476

Query: 574 WI---EVKKQPHVFL 585
           ++   E+ K  H ++
Sbjct: 477 YLGAPELAKWVHTYI 491



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/203 (33%), Positives = 106/203 (52%), Gaps = 8/203 (3%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED---AQGVF-----DEMSEKTTVGWNT 302
           KQLH    K G          L++  ++  S E    A+  F     D  S+      N+
Sbjct: 42  KQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNS 101

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I GY+  G   EA+ LY  M   GV  +H+TF  ++  CT++A+     Q H  +V+ G
Sbjct: 102 LIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMG 161

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
              D+   + L+ FY++ G ++    VF+ M  +NV+SW +LI GY    R +EAV LF 
Sbjct: 162 LEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFF 221

Query: 423 QMLLNGMRPNHVTFLAVLSACSR 445
           +M+  G+RP+ VT + V+SAC++
Sbjct: 222 EMVEAGIRPSSVTMVCVISACAK 244


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/603 (39%), Positives = 362/603 (60%), Gaps = 18/603 (2%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISAC---IGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           AL LF  +  E G  +   T+  +I+AC   +GL     ++++ S   S+GF+  + ++N
Sbjct: 124 ALSLFGEMR-EMGLVMDGFTFSGVITACCNHVGL-----IRQLHSLAFSSGFDSYVSVKN 177

Query: 170 RVLLMHVRCGMMIDARRLFDEMPE--RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            +L  + + G++ +A  +F+ M E  R+ VS N +I         L+A  L+ D+     
Sbjct: 178 SLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGF 237

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS-IEDAQ 286
           +    T A+++   + +E +S G Q H+ A+K GF  N  V   LIDMY+KCG+ + +++
Sbjct: 238 EIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESR 297

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHG-YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
            VF+E+     V WNT+I+GY+ +   S EAL+ + +M+ +G   D  +F   I  C+ L
Sbjct: 298 KVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNL 357

Query: 346 ASLEHAKQAHAGLVRHGFGLD-IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           +S    KQ HA  ++     + I  N+ALV  YSK G ++DAR +F +M   N ++ N++
Sbjct: 358 SSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSI 417

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           IAGY  HG G E++ LFEQML   + P  +T +++LSAC+ +G  E G + F  M     
Sbjct: 418 IAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFG 477

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           I+P A HY+CMI+LLGR G L EA  LI   PF      WAALL ACR  GN+EL + AA
Sbjct: 478 IEPEAEHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAA 537

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
            +   +EP     Y++L ++Y+++ K +EAA + + +R +G+R  P CSWIE+ K+ HVF
Sbjct: 538 NQFLQLEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVF 597

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD---EQEQRV-LSYHSEKLA 640
           ++ D SH + KEI+  +D M +++ + GYVP+ +      D   EQE+ + L++HSEKLA
Sbjct: 598 VAEDNSHPRIKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLA 657

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           VAFGL+ T    PL +V++ RIC DCHNAIK ++ +  R+I VRDA RFH F+DG CSCG
Sbjct: 658 VAFGLLFTKHGEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCG 717

Query: 701 DYW 703
           DYW
Sbjct: 718 DYW 720



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/182 (36%), Positives = 100/182 (54%), Gaps = 4/182 (2%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           NVF   ALI  Y+K   I  A  +FD++ +   V +NT+I  YA  G +  AL L+ EMR
Sbjct: 73  NVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMR 132

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           + G+ MD FTFS +I  C     L   +Q H+     GF   +   ++L+ +YSK G +E
Sbjct: 133 EMGLVMDGFTFSGVITACCNHVGL--IRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILE 190

Query: 385 DARHVFDKM--LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           +A  VF+ M    ++ +SWN++I  YG H RG +A+ L+  M+  G   +  T  +VL+ 
Sbjct: 191 EAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLTT 250

Query: 443 CS 444
            S
Sbjct: 251 FS 252


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/617 (36%), Positives = 366/617 (59%), Gaps = 6/617 (0%)

Query: 91  KKPSAGICSQIEKLVLNK-RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV 149
           + P++ +C+ + +   N  R  EA++L+  ++   G  V + TY  ++  C         
Sbjct: 93  QAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQ-RMGVGVNNFTYPFVLKVCASELGAVFG 151

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           + V   ++ TGF  DL++   ++ M+ +CG + DA  +FD M  R++V    +I     +
Sbjct: 152 EVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQA 211

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
              L+A +LF  + EE       T  ++  A   L    +   +H  A+  GF  +V V 
Sbjct: 212 ERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVG 271

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            +++ MY+KCG++E A+ VFD M E+  + WN++++GY  +G   +AL L+ +M+ S   
Sbjct: 272 NSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECD 331

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            +  T  +++  C+ L S    ++ H  ++     +D    +A++D Y K G ++ A  +
Sbjct: 332 PNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEM 391

Query: 390 FD--KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
           F+  ++  ++V SWN LI+GYG HG G+EA+ELF +M + G+ PN +TF ++LSACS +G
Sbjct: 392 FNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAG 451

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
           L + G + F  M++   ++P   HYACM+++LGR G L+EAF LI+  P + +  +W AL
Sbjct: 452 LIDEGRKCFADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGAL 510

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           L ACR++GN ELG+ AA  L+ +EPE    YV++ NIY +S K KE   V + ++ +GL+
Sbjct: 511 LLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLK 570

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-E 626
              A S IE   + H F + DQS    +E+YRKV+ + +E+   GYVP+   +L DV+ E
Sbjct: 571 KPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPE 630

Query: 627 QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
            ++ +L+YHSEKLAVAFG++      P+Q+ ++ R+C DCH A K I+ + GR+I+VRD 
Sbjct: 631 DKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDG 690

Query: 687 SRFHHFKDGMCSCGDYW 703
           +RFHHF+ G CSCGDYW
Sbjct: 691 NRFHHFQGGRCSCGDYW 707



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 105/204 (51%), Gaps = 13/204 (6%)

Query: 272 LIDMYSKCGSIEDAQGVFD--------EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
           LI +YSK G +  A+ +FD              +   NT++  YA  G S EA+DLY  M
Sbjct: 64  LIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYM 123

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
           +  GV +++FT+  ++++C         +  H  +VR GFG D+   +ALVD Y+K G I
Sbjct: 124 QRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEI 183

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
            DA  VFD+ML ++V+ W A+I  Y    R  +A+ LF +M   G   + +T ++V SA 
Sbjct: 184 GDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAV 243

Query: 444 SRSG-----LSERGWEIFQSMSRD 462
            + G     +S  G+ +      D
Sbjct: 244 GQLGDGRMAISVHGYAVLNGFIGD 267


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/606 (37%), Positives = 351/606 (57%), Gaps = 2/606 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I  +V   R+  A+ L+  +  +      S T+  ++ AC  L        + S +  
Sbjct: 74  TMIRGMVSKDRFNNAVHLYASMH-KAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFK 132

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           TGF+ D++++  V+  + +CG + DA ++FD+M  +N+VS   +I G I+ G + EA  L
Sbjct: 133 TGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAVDL 192

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F  L E            ++RA A L  +  G+ +  C  + G   NVFV+ +L+DMY+K
Sbjct: 193 FRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTK 252

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CGS+E+A+ VFD M EK  V W+ +I GYA +G   EA++L++EMR   V+ D +     
Sbjct: 253 CGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGA 312

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C  L +LE    A   +    F  + V  ++L+DFY+K G +E+A  V+  M  K+ 
Sbjct: 313 LSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDR 372

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           + +NA+I+G   +G+   A  +F QM   G+ PN  TF+ +L  C+ +GL + G   F S
Sbjct: 373 VVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNS 432

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           MS D  + P   HY CM++LL R G LDEA  LI+G P K    +W +LL  CR++   +
Sbjct: 433 MSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQ 492

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           L +   ++L  +EP    +YV+L NIY++S +  EA ++  T+  KG++ LP  SW+EV 
Sbjct: 493 LAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVD 552

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSE 637
              H FL GD SH  +++IY K++ +  ++ + GY P  + +L DV+E+E +  L  HSE
Sbjct: 553 GVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCHSE 612

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLAVAF LI+T     +++V++ R+C DCH AIK I+ VTGREIV+RD +RFH F DG C
Sbjct: 613 KLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGAC 672

Query: 698 SCGDYW 703
           SC DYW
Sbjct: 673 SCRDYW 678



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 177/352 (50%), Gaps = 7/352 (1%)

Query: 187 LFDEMPER-NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
           +F + P   N    N +I GM+    +  A  L+  + +      S TF+ +++A A L 
Sbjct: 59  VFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLN 118

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
           L  +G  +HS   K GF  +VFV   ++  YSKCG + DA  VFD+M  K  V W  +I 
Sbjct: 119 LFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMIC 178

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
           G    G   EA+DL+  + +SG++ D F    ++R C RL  LE  +     +   G   
Sbjct: 179 GCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSR 238

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           ++   ++LVD Y+K G +E+AR VFD M+ K+++ W+A+I GY ++G   EA+ELF +M 
Sbjct: 239 NVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMR 298

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERG-WEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
              +RP+    +  LS+C+  G  E G W   + +    +     +    +I+   + G 
Sbjct: 299 KVNVRPDCYAMVGALSSCASLGALELGNWA--KGLMNYEEFLSNPVLGTSLIDFYAKCGS 356

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNL--ELGKFAAEKLYGMEPEK 534
           ++EA  + +    K  + ++ A+++   + G +    G F     +G+ P +
Sbjct: 357 MEEALGVYKMMKEK-DRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNE 407



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 161/362 (44%), Gaps = 40/362 (11%)

Query: 241 SAGLELISVGKQLHSCALKMGFG-DNVFVSCALIDMYSKCGSIEDAQGVFDEM-SEKTTV 298
           ++GL+ +   K  H   L++    DN  +S  L    +   + +    VF +  +   T 
Sbjct: 11  ASGLKCLKHAKLAHCRLLRLNLHHDNDLLSIILRSTINFSNNAQYPILVFHKTPTNSNTF 70

Query: 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
            +NT+I G         A+ LY  M  + +  D FTFS +++ C RL         H+ +
Sbjct: 71  LYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLV 130

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
            + GF  D+   + +V FYSK G + DA  VFD M+ KNV+SW  +I G    G+  EAV
Sbjct: 131 FKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKFREAV 190

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR----------------- 461
           +LF  +L +G+RP+    + VL AC+R G  E G  I + M                   
Sbjct: 191 DLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMY 250

Query: 462 -------------DHKIKPRAMHYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWA 505
                        D  ++   + ++ MI+     GL  EA  L   +R    +       
Sbjct: 251 TKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMV 310

Query: 506 ALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV---LLNIYNSSGKLKEAAEVIRTLR 562
             L++C   G LELG + A+ L   E E LSN V+   L++ Y   G ++EA  V + ++
Sbjct: 311 GALSSCASLGALELGNW-AKGLMNYE-EFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMK 368

Query: 563 RK 564
            K
Sbjct: 369 EK 370


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/596 (35%), Positives = 364/596 (61%), Gaps = 8/596 (1%)

Query: 112  EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
            ++ E+F  ++ EG       TY +++  C  L ++   +++ ++++ TGF+ ++Y+ + +
Sbjct: 446  DSFEIFRQMQMEGMIP-NQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVL 504

Query: 172  LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE---EFSD 228
            + M+ + G +  A R+   +PE ++VS   +IAG +    + EA  LF ++     +F +
Sbjct: 505  IDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDN 564

Query: 229  CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
             G   FA+ I A AG+  +  G+Q+H+ +   GFG ++ ++ ALI +Y++CG I++A   
Sbjct: 565  IG---FASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLA 621

Query: 289  FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
            F+++ +K  + WN++++G A  GY EEAL ++  M  +  +++ FT+   I     LA++
Sbjct: 622  FEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANI 681

Query: 349  EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
            +  +Q H+ +++ G+  +   +++L+  Y+K G I DA   F+ M  +NVISWNA+I GY
Sbjct: 682  KQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGY 741

Query: 409  GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
              HG G EA+ LFE+M + G+ PNHVTF+ VLSACS  GL + G + F+SM + H + P+
Sbjct: 742  SQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPK 801

Query: 469  AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
            + HY C+++LLGR G LD A   I+  P      +W  LL+AC ++ N+E+G+ AA  L 
Sbjct: 802  SEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLL 861

Query: 529  GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
             +EPE  + YV++ NIY  S +        + ++ +G++  P  SWIEVK   H F +GD
Sbjct: 862  ELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGD 921

Query: 589  QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLIN 647
            + H  T +IY  +  +    S+ GYV +  +LL + ++ Q+  +   HSEKLA+AFGL++
Sbjct: 922  KLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLS 981

Query: 648  TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              +  P++++++ R+C DCHN IK ++ ++ R I+VRDA RFHHF  G+CSC D+W
Sbjct: 982  LGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 195/384 (50%), Gaps = 2/384 (0%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +++SA   ++     +++   ++  GF  + Y+ N ++ ++ R   +I A R+F  M  R
Sbjct: 266 SVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSR 325

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           + VS N +I+G++  G    A  LF  +  +       T A+++ A A +  +  G QLH
Sbjct: 326 DGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLH 385

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           S A+K G   ++ +  +L+D+YSKC  +E A   F     +  V WN ++  Y       
Sbjct: 386 SHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLS 445

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           ++ +++ +M+  G+  + FT+  I+R CT L +L   +Q H  +++ GF L++   S L+
Sbjct: 446 DSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLI 505

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D Y+K+G++  A  +  ++   +V+SW A+IAGY  H    EA++LFE+M   G++ +++
Sbjct: 506 DMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNI 565

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
            F + +SAC+      +G +I  + S              +I L  R G + EA+     
Sbjct: 566 GFASAISACAGIRALRQGQQI-HAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEK 624

Query: 495 APFKTTKNMWAALLTACRVNGNLE 518
              K   + W +L++    +G  E
Sbjct: 625 IGDKNNIS-WNSLVSGLAQSGYFE 647



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 195/391 (49%), Gaps = 11/391 (2%)

Query: 125 GFDVGSSTYDALISACIGLR-SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183
           G      T+  ++ AC+G   +   VK+V S     GF+    + N ++ ++ + G +  
Sbjct: 154 GITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIES 213

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A+++F+ +  +++V+   +I+G+  +G   EA LLF D+            ++++ AS  
Sbjct: 214 AKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTK 273

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           ++L  +G+QLH   +K GF    +V   L+ +YS+   +  A+ +F  M+ +  V +N++
Sbjct: 274 IQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSL 333

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I+G    G+S+ AL+L+ +M+   +K D  T + ++  C  + +L    Q H+  ++ G 
Sbjct: 334 ISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGM 393

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             DI+   +L+D YSK   +E A   F     +N++ WN ++  YG      ++ E+F Q
Sbjct: 394 SADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQ 453

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP--RAMHYAC--MIELL 479
           M + GM PN  T+ ++L  C+  G    G +I       H IK   +   Y C  +I++ 
Sbjct: 454 MQMEGMIPNQFTYPSILRTCTSLGALYLGEQI-----HTHVIKTGFQLNVYVCSVLIDMY 508

Query: 480 GREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
            + G L  A  ++R  P     + W A++  
Sbjct: 509 AKYGQLALALRILRRLPEDDVVS-WTAMIAG 538



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 221/467 (47%), Gaps = 25/467 (5%)

Query: 114 LELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLL 173
           ++L   +E E G       Y  L+  C+   S+ E  R+   +  +GF+ +  + + ++ 
Sbjct: 43  IQLMNFME-ERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVD 101

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
            + R G    A ++FDE   R++ S N +I   +      + F LF  +  E       T
Sbjct: 102 NYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYT 161

Query: 234 FATMIRASAGLEL-ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           FA +++A  G ++  +  KQ+HS     GF  +  V+  LID+YSK G IE A+ VF+ +
Sbjct: 162 FAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCI 221

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
             K  V W  +I+G + +G  EEA+ L+ +M  S +    +  S ++   T++   E  +
Sbjct: 222 CMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGE 281

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           Q H  +++ GF  +    + LV  YS+  ++  A  +F  M  ++ +S+N+LI+G    G
Sbjct: 282 QLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQG 341

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
             + A+ELF +M  + ++P+ +T  ++LSAC+  G   +G ++       H IK      
Sbjct: 342 FSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQL-----HSHAIK------ 390

Query: 473 ACMIELLGREGLLDEAF---ALIRGAP--FKTTKN----MWAALLTACRVNGNL--ELGK 521
           A M   +  EG L + +   A +  A   F TT+     +W  +L A     NL      
Sbjct: 391 AGMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEI 450

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
           F   ++ GM P + + Y  +L    S G L    ++   + + G ++
Sbjct: 451 FRQMQMEGMIPNQFT-YPSILRTCTSLGALYLGEQIHTHVIKTGFQL 496


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/618 (36%), Positives = 358/618 (57%), Gaps = 18/618 (2%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   +K +      +   V N R  EA  LF        +DV S  ++AL+S  +    +
Sbjct: 155 DLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNS---RTEWDVIS--WNALMSGYVQWGKM 209

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
            E + +F  M       D+   N ++  + R G M++ARRLFD  P R++ +   +++G 
Sbjct: 210 SEARELFDRMPGR----DVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGY 265

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
             +G   EA  +F    +   +  + ++  M+ A     ++   K+L      M    NV
Sbjct: 266 AQNGMLEEARRVF----DAMPERNAVSWNAMVAAYIQRRMMDEAKEL----FNMMPCRNV 317

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
                ++  Y++ G +E+A+ VFD M +K  V W  ++A Y+  G SEE L L+ EM   
Sbjct: 318 ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRC 377

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           G  ++   F+ ++  C  +A+LE   Q H  L+R G+G+     +AL+  Y K G +EDA
Sbjct: 378 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           R+ F++M  ++V+SWN +IAGY  HG G+EA+E+F+ M     +P+ +T + VL+ACS S
Sbjct: 438 RNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 497

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           GL E+G   F SM  D  +  +  HY CMI+LLGR G L EA  L++  PF+    MW A
Sbjct: 498 GLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGA 557

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           LL A R++ N ELG+ AAEK++ +EPE    YV+L NIY SSGK ++A ++   +  +G+
Sbjct: 558 LLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV 617

Query: 567 RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE 626
           + +P  SWIEV+ + H F +GD  H + ++IY  ++ + + + K GYV     +L DV+E
Sbjct: 618 KKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEE 677

Query: 627 QE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
           +E + +L YHSEKLAVA+G++N     P++++++ R+C DCHNA K I+ + GR I++RD
Sbjct: 678 EEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRD 737

Query: 686 ASRFHHFKDGMCSCGDYW 703
           ++RFHHF+ G CSCGDYW
Sbjct: 738 SNRFHHFRGGSCSCGDYW 755



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 185/406 (45%), Gaps = 62/406 (15%)

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            EP++   N+ +  H+R G + DA RLF  MP R+  + N ++AG   +G    A     
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLA----- 88

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
                         A++ RA    +  S    LH+ A+                      
Sbjct: 89  --------------ASLFRAIPRPDNYSYNTLLHALAVS--------------------S 114

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           S+ DA+G+FDEM  + +V +N +I+ +A HG    A   +    D   + D  +++ ++ 
Sbjct: 115 SLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYF----DLAPEKDAVSWNGMLA 170

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
              R   +E A+    GL       D+++ +AL+  Y +WG++ +AR +FD+M  ++V+S
Sbjct: 171 AYVRNGRVEEAR----GLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVS 226

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           WN +++GY   G   EA  LF+   +  +     T+ AV+S  +++G+ E    +F +M 
Sbjct: 227 WNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYAQNGMLEEARRVFDAMP 282

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
             +     A+ +  M+    +  ++DEA  L    P +   + W  +LT     G LE  
Sbjct: 283 ERN-----AVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS-WNTMLTGYAQAGMLE-- 334

Query: 521 KFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
              A+ ++   P+K + ++  +L  Y+  G  +E  ++   + R G
Sbjct: 335 --EAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCG 378


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/618 (37%), Positives = 352/618 (56%), Gaps = 51/618 (8%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           ++ AC  L +    ++V  + + +G   D+++ N V+ M+ +CG M +A ++F  M  ++
Sbjct: 370 ILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKD 429

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLF-------------------------------LDLWE 224
           +VS N ++ G   +G    A  LF                               LD++ 
Sbjct: 430 VVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFR 489

Query: 225 EFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGF--------GDNVFVSCAL 272
           +  DCGSR    T  +++ A   +  +  GK+ H  A+K            D++ V   L
Sbjct: 490 QMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGL 549

Query: 273 IDMYSKCGSIEDAQGVFDEMSEKT--TVGWNTIIAGYALHGYSEEALDLYYEM--RDSGV 328
           IDMY+KC S E A+ +FD +S K    V W  +I GYA HG +  AL L+  M   D  +
Sbjct: 550 IDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSI 609

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG--LDIVANSALVDFYSKWGRIEDA 386
           K + FT S  +  C RLA+L   +Q HA ++R+ +G  +  VAN  L+D YSK G ++ A
Sbjct: 610 KPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVAN-CLIDMYSKSGDVDTA 668

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           + VFD M  +N +SW +L+ GYG HGRGE+A+ +F++M    + P+ +TFL VL ACS S
Sbjct: 669 QIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHS 728

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           G+ + G   F  MS+D  + P   HYACM++L GR G L EA  LI   P + T  +W A
Sbjct: 729 GMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVA 788

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           LL+ACR++ N+ELG+FAA +L  +E     +Y +L NIY ++ + K+ A +  T++R G+
Sbjct: 789 LLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGI 848

Query: 567 RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE 626
           +  P CSWI+ +K    F  GD+SH Q+++IY  +  ++  I   GYVP+    L DVD+
Sbjct: 849 KKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSFALHDVDD 908

Query: 627 QEQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
           +E+  L + HSEKLA+A+G++      P++I ++ RIC DCH+AI  I+ +   EI++RD
Sbjct: 909 EEKGDLLFEHSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIEHEIILRD 968

Query: 686 ASRFHHFKDGMCSCGDYW 703
           +SRFHHFK+G CSC  YW
Sbjct: 969 SSRFHHFKNGSCSCKGYW 986



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/470 (25%), Positives = 213/470 (45%), Gaps = 54/470 (11%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G+     T+  +  AC  L S+     + + +  +GF  ++++ N V+ M+ +CG +  A
Sbjct: 254 GWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHA 313

Query: 185 RRLFDEMPER---NLVSCNMIIAGMIDSGDYLEAFLLFLDL-WEEFSDCGSRTFATMIRA 240
             +FD++  R   +LVS N +++  + + D   A  LF  +           +   ++ A
Sbjct: 314 HNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPA 373

Query: 241 SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW 300
            A L     G+Q+H  +++ G  D+VFV  A++DMY+KCG +E+A  VF  M  K  V W
Sbjct: 374 CASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSW 433

Query: 301 NTIIAGYA------------------------------LHGYSE-----EALDLYYEMRD 325
           N ++ GY+                              + GY++     EALD++ +M D
Sbjct: 434 NAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCD 493

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL--------DIVANSALVDFY 377
            G + +  T   ++  C  + +L H K+ H   ++    L        D+   + L+D Y
Sbjct: 494 CGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMY 553

Query: 378 SKWGRIEDARHVFDKMLCK--NVISWNALIAGYGNHGRGEEAVELFEQM--LLNGMRPNH 433
           +K    E AR +FD +  K  +V++W  +I GY  HG    A++LF  M  +   ++PN 
Sbjct: 554 AKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPND 613

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
            T    L AC+R      G ++   + R+           C+I++  + G +D A  +  
Sbjct: 614 FTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFD 673

Query: 494 GAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVL 541
             P +   + W +L+T   ++G  E  L  F   +   + P+ ++  VVL
Sbjct: 674 NMPQRNAVS-WTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVL 722



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 138/264 (52%), Gaps = 4/264 (1%)

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK 259
           N +I   +  G   + F L+  +          TF  + +A A L  +S+G  LH+   +
Sbjct: 228 NQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSR 287

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT---VGWNTIIAGYALHGYSEEA 316
            GF  NVFV  A++ MY KCG++  A  +FD++  +     V WN++++ Y     +  A
Sbjct: 288 SGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTA 347

Query: 317 LDLYYEMRDSGV-KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           L L+++M    +   D  +   I+  C  LA+    +Q H   +R G   D+   +A+VD
Sbjct: 348 LALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVD 407

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            Y+K G++E+A  VF +M  K+V+SWNA++ GY   GR E A+ LFE+M    +  + VT
Sbjct: 408 MYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVT 467

Query: 436 FLAVLSACSRSGLSERGWEIFQSM 459
           + AV++  ++ G      ++F+ M
Sbjct: 468 WTAVITGYAQRGQGCEALDVFRQM 491



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 132/282 (46%), Gaps = 11/282 (3%)

Query: 293 SEKTTVGWNTIIAGYALH-GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           S  +   WN +I   ALH G   +   LY +M+  G   DH+TF  + + C  L+SL   
Sbjct: 220 SPSSVFWWNQLIR-RALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLG 278

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC----KNVISWNALIAG 407
              HA + R GF  ++   +A+V  Y K G +  A ++FD  LC    ++++SWN++++ 
Sbjct: 279 ASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDD-LCHRGIQDLVSWNSVVSA 337

Query: 408 YGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           Y        A+ LF +M     M P+ ++ + +L AC+    S RG ++     R   + 
Sbjct: 338 YMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVD 397

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
              +  A ++++  + G ++EA  + +   FK   + W A++T     G LE      E+
Sbjct: 398 DVFVGNA-VVDMYAKCGKMEEANKVFQRMKFKDVVS-WNAMVTGYSQAGRLEHALSLFER 455

Query: 527 LYGMEPE-KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           +     E  +  +  ++  Y   G+  EA +V R +   G R
Sbjct: 456 MTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSR 497


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/556 (38%), Positives = 339/556 (60%), Gaps = 1/556 (0%)

Query: 149  VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
            +K+  + + + G + D  +  +  +M+V    +  A  +F+++P       N++I G   
Sbjct: 736  LKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFAT 795

Query: 209  SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
             G +L +  L+  + E+        F   +++ AGL  +  GK +H   +  G  +++FV
Sbjct: 796  DGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFV 855

Query: 269  SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
              AL+DMY+KCG IE A+ VFD+M+ +  V W ++I+GYA +GY+ E L  +  MR SGV
Sbjct: 856  DAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGV 915

Query: 329  KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
              +  +   ++  C  L +L   +  H+ +++ GF  DI+  +A++D YSK G ++ AR 
Sbjct: 916  IPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARC 975

Query: 389  VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
            +FD+   K+++ W+A+IA YG HG G +A++LF+QM+  G+RP+HVTF  VLSACS SGL
Sbjct: 976  LFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGL 1035

Query: 449  SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
             E G   FQ M+ +  I  +  +YACM++LLGR G L EA  LI   P +   ++W +LL
Sbjct: 1036 LEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLL 1095

Query: 509  TACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
             ACR++ NL+L +  A+ L+ ++P     +V+L NIY +  +  E  +V + + R+G   
Sbjct: 1096 GACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANK 1155

Query: 569  LPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ- 627
            +   S +E   Q H F  GD+SH Q +++Y K++ +   +   GYVP    +L D++E+ 
Sbjct: 1156 IQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEA 1215

Query: 628  EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDAS 687
            ++  LSYHSE+LA+AFGLINTS  T L+I ++ RIC DCHNAIKLI+ +  R I+VRD  
Sbjct: 1216 KEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMH 1275

Query: 688  RFHHFKDGMCSCGDYW 703
            RFH F+DG+CSCGDYW
Sbjct: 1276 RFHRFEDGVCSCGDYW 1291



 Score =  316 bits (809), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 171/519 (32%), Positives = 297/519 (57%), Gaps = 1/519 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N    EAL LF  +       +   T  +++SAC  L +++    V   ++   F+ DL 
Sbjct: 183 NNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLP 242

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N +L ++ + G    A  LF +MPE++++S + +IA   ++    EA  LF ++ E+ 
Sbjct: 243 LVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKR 302

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            +  S T  + ++A A    +  GK++H  A+  GF  +  VS ALIDMY KC   ++A 
Sbjct: 303 FEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAV 362

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +F  + +K  V W  +++GYA +G + +++ ++  M   G++ D      I+   + L 
Sbjct: 363 DLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELG 422

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
             + A   H  +VR GF  ++   ++L++ YSK G + DA  +F  M+ ++V+ W+++IA
Sbjct: 423 IFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIA 482

Query: 407 GYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
            YG HGRG EA+E+F+QM+ N  +RPN+VTFL++LSACS +GL E G +IF  M  D+++
Sbjct: 483 AYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQL 542

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
           +P + H+  M++LLGR G L +A  +I   P     ++W ALL ACR++ N+E+G+ AA+
Sbjct: 543 RPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAK 602

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
            L+ ++P     Y++L NIY   GK    AE+   ++ +GL+ +   S +EV+   H FL
Sbjct: 603 NLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFL 662

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV 624
           + D+ H  +++IY  + ++  ++ K  Y+P+   LL D 
Sbjct: 663 ASDRFHPDSQKIYELLRKLEAQMGKEVYIPDLDFLLHDT 701



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 118/406 (29%), Positives = 201/406 (49%), Gaps = 19/406 (4%)

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
           R V ++ S +  TG   D +   ++  ++ +C  +  AR++FDE P  N+   N  +   
Sbjct: 18  RSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSY 77

Query: 207 IDSGDYLEAFLLF-LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG-FGD 264
                + E   LF L +        + T    ++A AGL ++ +GK +H  A K    G 
Sbjct: 78  CREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGS 137

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM- 323
           ++FV  AL+++YSKCG + +A  VF+E     TV W +++ GY  +   EEAL L+ +M 
Sbjct: 138 DMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMV 197

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
               V +D  T   ++  C +L +++     H  ++R  F  D+   ++L++ Y+K G  
Sbjct: 198 MMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCE 257

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           + A ++F KM  K+VISW+ +IA Y N+    EA+ LF +M+     PN VT ++ L AC
Sbjct: 258 KIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQAC 317

Query: 444 SRSGLSERGWEIFQSMSRDHKI---KPRAMHYA---CMIELLGREGLLDEAFALIRGAPF 497
           + S   E G +I       HKI   K   + ++    +I++  +    DEA  L +  P 
Sbjct: 318 AVSRNLEEGKKI-------HKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPK 370

Query: 498 KTTKNMWAALLTACRVNGNL--ELGKFAAEKLYGMEPEKLSNYVVL 541
           K   + W ALL+    NG     +G F      G++P+ ++   +L
Sbjct: 371 KDVVS-WVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKIL 415



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 208/412 (50%), Gaps = 8/412 (1%)

Query: 108 KRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG-FEPDLY 166
           K++ E L LF ++    G    + T    + AC GLR +   K +  +         D++
Sbjct: 81  KQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMF 140

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + + ++ ++ +CG M +A ++F+E    + V    ++ G   + D  EA  LF  +    
Sbjct: 141 VGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQM--VM 198

Query: 227 SDC---GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
            DC      T  +++ A A L  +  G  +H   ++  F  ++ +  +L+++Y+K G  +
Sbjct: 199 MDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEK 258

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
            A  +F +M EK  + W+T+IA YA +  + EAL+L++EM +   + +  T    ++ C 
Sbjct: 259 IAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACA 318

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
              +LE  K+ H   V  GF LD   ++AL+D Y K    ++A  +F ++  K+V+SW A
Sbjct: 319 VSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVA 378

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           L++GY  +G   +++ +F  ML +G++P+ V  + +L+A S  G+ ++   +   + R  
Sbjct: 379 LLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRS- 437

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
                    A +IEL  + G L +A  L +G   +    +W++++ A  ++G
Sbjct: 438 GFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVV-IWSSMIAAYGIHG 488



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 174/344 (50%), Gaps = 7/344 (2%)

Query: 101  IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
            I     + R+  +LEL+  +  E G       +   + +C GL  ++  K +  +++  G
Sbjct: 790  IRGFATDGRFLSSLELYSKM-MEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCG 848

Query: 161  FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
               DL++   ++ M+ +CG +  AR +FD+M  R+LVS   +I+G   +G Y    L F 
Sbjct: 849  CSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNG-YNSETLGFF 907

Query: 221  DLWEEFSDCGSR-TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
            DL        +R +  +++ A   L  +  G+  HS  ++ GF  ++ V+ A++DMYSKC
Sbjct: 908  DLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKC 967

Query: 280  GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
            GS++ A+ +FDE + K  V W+ +IA Y +HG+  +A+DL+ +M  +GV+  H TF+ ++
Sbjct: 968  GSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVL 1027

Query: 340  RICTRLASLEHAKQAHAGLVRHGFGLDIVANSA-LVDFYSKWGRIEDARHVFDKMLCKNV 398
              C+    LE  K     +         ++N A +VD   + G++ +A  + + M  +  
Sbjct: 1028 SACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPD 1087

Query: 399  IS-WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
             S W +L+     H   + A ++ + +    + P H  +  +LS
Sbjct: 1088 ASIWGSLLGACRIHNNLDLAEKIADHLF--HLDPVHAGYHVLLS 1129



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/270 (23%), Positives = 114/270 (42%), Gaps = 21/270 (7%)

Query: 99   SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
            S I     N    E L  F+++   G      S    L+ AC  L ++R+ +   SY++ 
Sbjct: 889  SMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLL-ACGNLGALRKGEWFHSYVIQ 947

Query: 159  TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            TGFE D+ +   ++ M+ +CG +  AR LFDE   ++LV  + +IA     G   +A   
Sbjct: 948  TGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKA--- 1004

Query: 219  FLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCAL-KMGFGDNVFVSCALI 273
             +DL+++    G R    TF  ++ A +   L+  GK        +      +     ++
Sbjct: 1005 -IDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMV 1063

Query: 274  DMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD- 331
            D+  + G + +A  + + M  E     W +++    +H      LDL  ++ D    +D 
Sbjct: 1064 DLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIH----NNLDLAEKIADHLFHLDP 1119

Query: 332  -----HFTFSMIIRICTRLASLEHAKQAHA 356
                 H   S I    +R   +E  ++  A
Sbjct: 1120 VHAGYHVLLSNIYAAKSRWNEVEKVRKMMA 1149


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/574 (37%), Positives = 342/574 (59%), Gaps = 2/574 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+ +++SA      +   +++ S +   GF+ ++++   ++ M+ +C  M  A R+FD+M
Sbjct: 12  TFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQM 71

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVG 250
           PERNLVS N +I G   +  Y  A  +F D+  E +   +  + ++++ A A +  ++ G
Sbjct: 72  PERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFG 131

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           +Q+H   +K G     +V  +L+DMY KC   ++   +F  + ++  V WN ++ G+  +
Sbjct: 132 RQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQN 191

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
              EEA + ++ MR  G+  D  +FS ++     LA+L      H  +++ G+  ++   
Sbjct: 192 DKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCIL 251

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
            +L+  Y+K G + DA  VF+ +   NVISW A+I+ Y  HG   + +ELFE ML  G+ 
Sbjct: 252 GSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIE 311

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           P+HVTF+ VLSACS +G  E G   F SM + H + P   HYACM++LLGR G LDEA  
Sbjct: 312 PSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKR 371

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
            I   P K T ++W ALL ACR  GNL++G+ AAE+L+ MEP    NYV+L N+   SG+
Sbjct: 372 FIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGR 431

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
           L+EA EV R +   G+R  P CSWI+VK    VF + D+SH  + EIY+ ++++   + K
Sbjct: 432 LEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKK 491

Query: 611 HGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
            GYV E + +   ++E +E++ L YHSEKLA+AFGL+     +P++I ++ R C  CH  
Sbjct: 492 KGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGHCHTV 551

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +KL + +  REI+VRD +RFH F DG CSCGDYW
Sbjct: 552 MKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 178/368 (48%), Gaps = 13/368 (3%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I     N  Y  A+ +F+ +  E        +  +++SAC  +  +   ++V   ++ 
Sbjct: 81  SMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVK 140

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G  P  Y+ N ++ M+ +C    +  +LF  + +R++V+ N+++ G + +  + EA   
Sbjct: 141 FGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNY 200

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F  +  E       +F+T++ +SA L  +  G  +H   +K+G+  N+ +  +LI MY+K
Sbjct: 201 FWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAK 260

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CGS+ DA  VF+ + +   + W  +I+ Y LHG + + ++L+  M   G++  H TF  +
Sbjct: 261 CGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCV 320

Query: 339 IRICTRLASLEHAKQAHAGLVR--HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
           +  C+    +E    AH   ++  H         + +VD   + G +++A+   + M  K
Sbjct: 321 LSACSHTGRVEEG-LAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMK 379

Query: 397 NVIS-WNALIAG---YGNHGRGEEAVE-LFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
              S W AL+     YGN   G EA E LFE    N   P +   LA  + C+RSG  E 
Sbjct: 380 PTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYN---PGNYVLLA--NMCTRSGRLEE 434

Query: 452 GWEIFQSM 459
             E+ + M
Sbjct: 435 ANEVRRLM 442



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 74/126 (58%), Gaps = 1/126 (0%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           MR SG   + FTFS I+        + H +Q H+ + +HGF  +I   +ALVD Y+K   
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCAD 60

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL-NGMRPNHVTFLAVLS 441
           +  A  VFD+M  +N++SWN++I G+ ++   + AV +F+ +L    + PN V+  +VLS
Sbjct: 61  MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLS 120

Query: 442 ACSRSG 447
           AC+  G
Sbjct: 121 ACANMG 126


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/605 (35%), Positives = 350/605 (57%), Gaps = 3/605 (0%)

Query: 101  IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
            I  LV      EAL LF+ ++ +        T  +++ AC  L  ++  K +  + +   
Sbjct: 402  IAALVQTGYPEEALSLFQEMQNQK-MKPNRVTLMSILPACADLSLLKLGKSIHCFTVKAD 460

Query: 161  FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
             + DL     ++ M+ +CG    A   F+ M  R++V+ N +I G    GD   A  +F 
Sbjct: 461  MDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFY 520

Query: 221  DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
             L     +  + T   ++ A A L  +  G  +H   +K+GF  +  V  ALIDMY+KCG
Sbjct: 521  KLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCG 580

Query: 281  SIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
            S+  A+ +F++    K  V WN IIA Y  +G+++EA+  +++MR      +  TF  ++
Sbjct: 581  SLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVL 640

Query: 340  RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
                 LA+       HA +++ GF  + +  ++L+D Y+K G++  +  +F++M  K+ +
Sbjct: 641  PAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTV 700

Query: 400  SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
            SWNA+++GY  HG G+ A+ LF  M  + ++ + V+F++VLSAC   GL E G +IF SM
Sbjct: 701  SWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSM 760

Query: 460  SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
            S  + IKP   HYACM++LLGR GL DE    I+  P +    +W ALL +CR++ N++L
Sbjct: 761  SDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKL 820

Query: 520  GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
            G+ A + L  +EP   +++VVL +IY  SG+  +A +    +   GL+  P CSW+E+K 
Sbjct: 821  GEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKN 880

Query: 580  QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEK 638
            + H F  GD+SH Q + ++   + ++ ++ K GYVP+   +L +V+E+++ +  Y HSE+
Sbjct: 881  KVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSER 940

Query: 639  LAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCS 698
            LA+ F L+NT   + +QIV++ R+C DCH   K I+ +T R I+VRDA+RFHHF+DG+CS
Sbjct: 941  LAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICS 1000

Query: 699  CGDYW 703
            C DYW
Sbjct: 1001 CNDYW 1005



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/497 (25%), Positives = 233/497 (46%), Gaps = 49/497 (9%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N  + E LELF+ ++  G   +   +  +   A      + + K +    L    + D+ 
Sbjct: 307 NGCFVEVLELFDKMKL-GNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDIL 365

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   +++M+ +CG    A++LF  +  R+LV+ + IIA ++ +G   EA  LF ++  + 
Sbjct: 366 VATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQK 425

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 T  +++ A A L L+ +GK +H   +K     ++    AL+ MY+KCG    A 
Sbjct: 426 MKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAAL 485

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
             F+ MS +  V WN++I GYA  G    A+D++Y++R S +  D  T   ++  C  L 
Sbjct: 486 TTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLN 545

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALI 405
            L+     H  +V+ GF  D    +AL+D Y+K G +  A  +F+K    K+ ++WN +I
Sbjct: 546 DLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVII 605

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS-----RSGLS------ERGW- 453
           A Y  +G  +EA+  F QM L    PN VTF++VL A +     R G++      + G+ 
Sbjct: 606 AAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFL 665

Query: 454 -----------------------EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA-- 488
                                  ++F  M  DHK     + +  M+      G  D A  
Sbjct: 666 SNTLVGNSLIDMYAKCGQLXYSEKLFNEM--DHK---DTVSWNAMLSGYAVHGHGDRAIA 720

Query: 489 -FALIRGAPFKTTKNMWAALLTACRVNGNLELGK---FAAEKLYGMEPEKLSNYVVLLNI 544
            F+L++ +  +     + ++L+ACR  G +E G+    +    Y ++P+ L +Y  ++++
Sbjct: 721 LFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPD-LEHYACMVDL 779

Query: 545 YNSSGKLKEAAEVIRTL 561
              +G   E    I+ +
Sbjct: 780 LGRAGLFDETLGFIKVM 796



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/357 (29%), Positives = 186/357 (52%), Gaps = 3/357 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I     +K+Y EALE++  +  E G +    T+  ++ AC G  +++E       +  
Sbjct: 99  SMIRAYTRSKQYNEALEMYYCM-VEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDR 157

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G E D+++   ++ M+ + G +  AR +FD+MP+R++V+ N +IAG+  S D  EA   
Sbjct: 158 RGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDF 217

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F  +     +  S +   +      L  I + + +H    +  F   V  S  LID+YSK
Sbjct: 218 FRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAV--SNGLIDLYSK 275

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG ++ A+ VFD+M ++  V W T++AGYA +G   E L+L+ +M+   V+++  +    
Sbjct: 276 CGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSA 335

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
                    LE  K+ H   ++     DI+  + L+  Y+K G  E A+ +F  +  +++
Sbjct: 336 FLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDL 395

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           ++W+A+IA     G  EEA+ LF++M    M+PN VT +++L AC+   L + G  I
Sbjct: 396 VAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSI 452



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 207/424 (48%), Gaps = 20/424 (4%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPD---LYMRNRVLLMHVRCGMMIDARRLFD 189
           Y  L+S+C   + +  + ++ + ++ +GF+      ++ N   L H +C +   AR +FD
Sbjct: 35  YPRLLSSC---KHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFH-KCDL---ARSVFD 87

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
             P  + +  N +I     S  Y EA  ++  + E+  +    TF  +++A  G   +  
Sbjct: 88  STPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQE 147

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G   H    + G   +VF+   L+DMYSK G ++ A+ VFD+M ++  V WN +IAG + 
Sbjct: 148 GVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQ 207

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
                EA+D +  M+  GV+    +   +     +L+++E  +  H  + R  F   +  
Sbjct: 208 SEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDFSSAV-- 265

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
           ++ L+D YSK G ++ AR VFD+M+ ++ +SW  ++AGY ++G   E +ELF++M L  +
Sbjct: 266 SNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV 325

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
           R N V+ ++   A + +   E+G EI    +   +I    +    ++ +  + G  ++A 
Sbjct: 326 RINKVSAVSAFLAAAETIDLEKGKEI-HGCALQQRIDSDILVATPLMVMYAKCGETEKAK 384

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
            L  G   +     W+A++ A    G  E  L  F   +   M+P    N V L++I  +
Sbjct: 385 QLFWGLQGRDLV-AWSAIIAALVQTGYPEEALSLFQEMQNQKMKP----NRVTLMSILPA 439

Query: 548 SGKL 551
              L
Sbjct: 440 CADL 443


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/607 (36%), Positives = 355/607 (58%), Gaps = 34/607 (5%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G    S T+  L  +C   ++ +E K++ + +L  G   DL++   ++ M+ + G++ DA
Sbjct: 73  GLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDA 132

Query: 185 -------------------------------RRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
                                          +++FDE+P +++VS N +I+G  + G Y 
Sbjct: 133 HKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYK 192

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA  LF ++ +        T AT++        + +G+Q+HS     GFG N+ +  ALI
Sbjct: 193 EALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALI 252

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           D+YSKCG +E A G+F+ +  K  + WNT+I GYA   + +EAL ++ EM   G   +  
Sbjct: 253 DLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDV 312

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRH--GFGLDIVANSALVDFYSKWGRIEDARHVFD 391
           T   I+  C  L +++  +  H  + +   G   +    ++L+D Y+K G IE A  VFD
Sbjct: 313 TMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFD 372

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
            +L K++ S NA+I G+  HGR + A +L  +M  +G+ P+ +TF+ +LSACS +GLS+ 
Sbjct: 373 TILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDL 432

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
           G +IF+SM+ D++I+P+  HY CMI+LLGR GL  EA  LI     +    +W +LL AC
Sbjct: 433 GRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKAC 492

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           +++ NLELG+  A+KL  +EP+   +YV+L NIY +S +  + A V   L  KGL+ +P 
Sbjct: 493 KIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPG 552

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQR 630
           CS IE+    H FL GD+ H Q KEIY+ ++ +   +++ G+V +   +L +++E+ ++ 
Sbjct: 553 CSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEELKEG 612

Query: 631 VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFH 690
            LSYHSEKLA+AFGLI+T   T L+IV++ R+C +CH A KLI+ +  REI+ RD SRFH
Sbjct: 613 ALSYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFH 672

Query: 691 HFKDGMC 697
           HFKDGMC
Sbjct: 673 HFKDGMC 679



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 134/447 (29%), Positives = 210/447 (46%), Gaps = 70/447 (15%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A  +F  + E N +S N +I G   S D + A  L++ +        S TF  + ++ A 
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA------------------ 285
            +    GKQ+H+  LK G   ++ V  +LI MY++ G +EDA                  
Sbjct: 91  SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150

Query: 286 -------------QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332
                        Q +FDE+  K  V WN +I+GYA  G  +EAL+L+ EM    VK D 
Sbjct: 151 ITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDE 210

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
            T + ++  CT   ++E  +Q H+ +  HGFG ++   +AL+D YSK G +E A  +F+ 
Sbjct: 211 STMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEG 270

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           +  K+VISWN LI GY      +EA+ +F++ML  G  PN VT L++L AC+  G  + G
Sbjct: 271 LQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIG 330

Query: 453 WEIFQSMSRDHK-IKPRAMHYACMIELLGREGLLDEA---------------FALIRG-- 494
             I   + +  K I         +I++  + G ++ A                A+I G  
Sbjct: 331 RWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFA 390

Query: 495 ------APFKTTKNM-----------WAALLTACRVNGNLELGK--FAAEKL-YGMEPEK 534
                 A F     M           +  LL+AC   G  +LG+  F +  L Y +EP K
Sbjct: 391 MHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEP-K 449

Query: 535 LSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           L +Y  ++++   SG  KEA E+I ++
Sbjct: 450 LEHYGCMIDLLGRSGLFKEAEELINSM 476



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 171/363 (47%), Gaps = 41/363 (11%)

Query: 109 RYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
           RY+EALELF E+++ +   D   ST   ++S C    ++   +++ S++ + GF  +L +
Sbjct: 190 RYKEALELFNEMMKMDVKPD--ESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKL 247

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            N ++ ++ +CG M  A  LF+ +  ++++S N +I G      + EA L+F ++ +   
Sbjct: 248 VNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGE 307

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALK--MGFGDNVFVSCALIDMYSKCGSIEDA 285
                T  +++ A A L  I +G+ +H    K   G   N  +  +LIDMY+KCG+IE A
Sbjct: 308 TPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAA 367

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
             VFD +  K+    N +I G+A+HG ++ A DL   M+  G++ D  TF  ++  C+  
Sbjct: 368 NQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACS-- 425

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
                    HAGL                   S  GR        D  +   +  +  +I
Sbjct: 426 ---------HAGL-------------------SDLGRKIFKSMTLDYRIEPKLEHYGCMI 457

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
              G  G  +EA EL   M    M P+ V + ++L AC      E G  I Q +    KI
Sbjct: 458 DLLGRSGLFKEAEELINSMT---MEPDGVIWGSLLKACKIHKNLELGELIAQKLM---KI 511

Query: 466 KPR 468
           +P+
Sbjct: 512 EPK 514


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/596 (35%), Positives = 363/596 (60%), Gaps = 8/596 (1%)

Query: 112  EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
            ++ E+F  ++ EG       TY +++  C  L ++   +++ ++++ TGF+ ++Y+ + +
Sbjct: 446  DSFEIFRQMQMEGMIP-NQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVL 504

Query: 172  LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE---EFSD 228
            + M+ + G +  A R+   +PE ++VS   +IAG +    + EA  LF ++     +F +
Sbjct: 505  IDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDN 564

Query: 229  CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
             G   FA+ I A AG+  +  G+Q+H+ +   GFG ++ ++ ALI +Y++CG I++A   
Sbjct: 565  IG---FASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLA 621

Query: 289  FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
            F+++ +K  + WN++++G A  GY EEAL ++  M  +  +++ FT+   I     LA++
Sbjct: 622  FEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANI 681

Query: 349  EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
            +  +Q H+ +++ G+  +   +++L+  Y+K G I DA   F+ M  +NVISWNA+I GY
Sbjct: 682  KQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGY 741

Query: 409  GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
              HG G EA+ LFE+M + G+ PNHVTF+ VLSACS  GL + G + F+SM + H + P+
Sbjct: 742  SQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPK 801

Query: 469  AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
            + HY C+++LLGR G LD A   I+  P      +W  LL+AC ++ N+E+G+ AA  L 
Sbjct: 802  SEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLL 861

Query: 529  GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
             +EPE  + YV++ NIY  S +        + ++  G++  P  SWIEVK   H F +GD
Sbjct: 862  ELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGD 921

Query: 589  QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLIN 647
            + H  T +IY  +  +    S+ GYV +  +LL + ++ Q+  +   HSEKLA+AFGL++
Sbjct: 922  KLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLS 981

Query: 648  TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              +  P++++++ R+C DCHN IK ++ ++ R I+VRDA RFHHF  G+CSC D+W
Sbjct: 982  LGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/384 (26%), Positives = 195/384 (50%), Gaps = 2/384 (0%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +++SA   ++     +++   ++  GF  + Y+ N ++ ++ R   +I A R+F  M  R
Sbjct: 266 SVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSR 325

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           + VS N +I+G++  G    A  LF  +  +       T A+++ A A +  +  G QLH
Sbjct: 326 DGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLH 385

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           S A+K G   ++ +  +L+D+YSKC  +E A   F     +  V WN ++  Y       
Sbjct: 386 SHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLS 445

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           ++ +++ +M+  G+  + FT+  I+R CT L +L   +Q H  +++ GF L++   S L+
Sbjct: 446 DSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLI 505

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D Y+K+G++  A  +  ++   +V+SW A+IAGY  H    EA++LFE+M   G++ +++
Sbjct: 506 DMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNI 565

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
            F + +SAC+      +G +I  + S              +I L  R G + EA+     
Sbjct: 566 GFASAISACAGIRALRQGQQI-HAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEK 624

Query: 495 APFKTTKNMWAALLTACRVNGNLE 518
              K   + W +L++    +G  E
Sbjct: 625 IGDKNNIS-WNSLVSGLAQSGYFE 647



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/391 (26%), Positives = 195/391 (49%), Gaps = 11/391 (2%)

Query: 125 GFDVGSSTYDALISACIGLR-SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183
           G      T+  ++ AC+G   +   VK+V S     GF+    + N ++ ++ + G +  
Sbjct: 154 GITPNGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIES 213

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A+++F+ +  +++V+   +I+G+  +G   EA LLF D+            ++++ AS  
Sbjct: 214 AKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTK 273

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           ++L  +G+QLH   +K GF    +V   L+ +YS+   +  A+ +F  M+ +  V +N++
Sbjct: 274 IQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSL 333

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I+G    G+S+ AL+L+ +M+   +K D  T + ++  C  + +L    Q H+  ++ G 
Sbjct: 334 ISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGM 393

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             DI+   +L+D YSK   +E A   F     +N++ WN ++  YG      ++ E+F Q
Sbjct: 394 SADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQ 453

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP--RAMHYAC--MIELL 479
           M + GM PN  T+ ++L  C+  G    G +I       H IK   +   Y C  +I++ 
Sbjct: 454 MQMEGMIPNQFTYPSILRTCTSLGALYLGEQI-----HTHVIKTGFQLNVYVCSVLIDMY 508

Query: 480 GREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
            + G L  A  ++R  P     + W A++  
Sbjct: 509 AKYGQLALALRILRRLPEDDVVS-WTAMIAG 538



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 178/355 (50%), Gaps = 7/355 (1%)

Query: 114 LELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLL 173
           ++L   +E E G       Y  L+  C+   S+ E  R+   +  +GF+ +  + + ++ 
Sbjct: 43  IQLMNFME-ERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVD 101

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
            + R G    A ++FDE   R++ S N +I   +      + F LF  +  E       T
Sbjct: 102 NYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYT 161

Query: 234 FATMIRASAGLEL-ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           FA +++A  G ++  +  KQ+HS     GF  +  V+  LID+YSK G IE A+ VF+ +
Sbjct: 162 FAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCI 221

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
             K  V W  +I+G + +G  EEA+ L+ +M  S +    +  S ++   T++   E  +
Sbjct: 222 CMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGE 281

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           Q H  +++ GF  +    + LV  YS+  ++  A  +F  M  ++ +S+N+LI+G    G
Sbjct: 282 QLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQG 341

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
             + A+ELF +M  + ++P+ +T  ++LSAC+  G   +G ++       H IK 
Sbjct: 342 FSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQL-----HSHAIKA 391



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 1/193 (0%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M + GV+ ++  +  ++  C    SL    + H  + + GF  + +   +LVD Y + G 
Sbjct: 49  MEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGD 108

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
              A  VFD+   ++V SWN +I  +       +   LF +ML  G+ PN  TF  VL A
Sbjct: 109 QHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKA 168

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
           C    ++    +   S +  +      +    +I+L  + G ++ A  +      K    
Sbjct: 169 CVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVT 228

Query: 503 MWAALLTACRVNG 515
            W A+++    NG
Sbjct: 229 -WVAMISGLSQNG 240


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/618 (36%), Positives = 357/618 (57%), Gaps = 18/618 (2%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   +K +      +   V N R  EA  LF         +  + +++AL+S  +    +
Sbjct: 155 DLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT-----EWDAISWNALMSGYVQWGKM 209

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
            E + +F  M       D+   N ++  + R G M++ARRLFD  P R++ +   +++G 
Sbjct: 210 SEARELFDRMPGR----DVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGY 265

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
             +G   EA  +F    +   +  + ++  M+ A     ++   K+L      M    NV
Sbjct: 266 AQNGMLEEARRVF----DAMPERNAVSWNAMVAAYIQRRMMDEAKEL----FNMMPCRNV 317

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
                ++  Y++ G +E+A+ VFD M +K  V W  ++A Y+  G SEE L L+ EM   
Sbjct: 318 ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRC 377

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           G  ++   F+ ++  C  +A+LE   Q H  L+R G+G+     +AL+  Y K G +EDA
Sbjct: 378 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           R+ F++M  ++V+SWN +IAGY  HG G+EA+E+F+ M     +P+ +T + VL+ACS S
Sbjct: 438 RNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 497

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           GL E+G   F SM  D  +  +  HY CMI+LLGR G L EA  L++  PF+    MW A
Sbjct: 498 GLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGA 557

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           LL A R++ N ELG+ AAEK++ +EPE    YV+L NIY SSGK ++A ++   +  +G+
Sbjct: 558 LLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV 617

Query: 567 RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE 626
           + +P  SWIEV+ + H F +GD  H + ++IY  ++ + + + K GYV     +L DV+E
Sbjct: 618 KKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEE 677

Query: 627 QE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
           +E + +L YHSEKLAVA+G++N     P++++++ R+C DCHNA K I+ + GR I++RD
Sbjct: 678 EEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRD 737

Query: 686 ASRFHHFKDGMCSCGDYW 703
           ++RFHHF+ G CSCGDYW
Sbjct: 738 SNRFHHFRGGSCSCGDYW 755



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 184/406 (45%), Gaps = 62/406 (15%)

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            EP++   N+ +  H+R G + DA RLF  MP R+  + N ++AG   +G    A     
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLA----- 88

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
                         A++ RA    +  S    LH+ A+                      
Sbjct: 89  --------------ASLFRAIPRPDNYSYNTLLHALAVS--------------------S 114

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           S+ DA+G+FDEM  + +V +N +I+ +A HG    A   +    D   + D  +++ ++ 
Sbjct: 115 SLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYF----DLAPEKDAVSWNGMLA 170

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
              R   +E A+    GL       D ++ +AL+  Y +WG++ +AR +FD+M  ++V+S
Sbjct: 171 AYVRNGRVEEAR----GLFNSRTEWDAISWNALMSGYVQWGKMSEARELFDRMPGRDVVS 226

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           WN +++GY   G   EA  LF+   +  +     T+ AV+S  +++G+ E    +F +M 
Sbjct: 227 WNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYAQNGMLEEARRVFDAMP 282

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
             +     A+ +  M+    +  ++DEA  L    P +   + W  +LT     G LE  
Sbjct: 283 ERN-----AVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS-WNTMLTGYAQAGMLE-- 334

Query: 521 KFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
              A+ ++   P+K + ++  +L  Y+  G  +E  ++   + R G
Sbjct: 335 --EAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCG 378


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/618 (36%), Positives = 358/618 (57%), Gaps = 18/618 (2%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   +K +      +   V N R  EA  LF        +DV S  ++AL+S  +    +
Sbjct: 30  DLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNS---RTEWDVIS--WNALMSGYVQWGKM 84

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
            E + +F  M       D+   N ++  + R G M++ARRLFD  P R++ +   +++G 
Sbjct: 85  SEARELFDRMPGR----DVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGY 140

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
             +G   EA  +F    +   +  + ++  M+ A     ++   K+L      M    NV
Sbjct: 141 AQNGMLEEARRVF----DAMPERNAVSWNAMVAAYIQRRMMDEAKEL----FNMMPCRNV 192

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
                ++  Y++ G +E+A+ VFD M +K  V W  ++A Y+  G SEE L L+ EM   
Sbjct: 193 ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRC 252

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           G  ++   F+ ++  C  +A+LE   Q H  L+R G+G+     +AL+  Y K G +EDA
Sbjct: 253 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 312

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           R+ F++M  ++V+SWN +IAGY  HG G+EA+E+F+ M     +P+ +T + VL+ACS S
Sbjct: 313 RNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 372

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           GL E+G   F SM  D  +  +  HY CMI+LLGR G L EA  L++  PF+    MW A
Sbjct: 373 GLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGA 432

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           LL A R++ N ELG+ AAEK++ +EPE    YV+L NIY SSGK ++A ++   +  +G+
Sbjct: 433 LLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV 492

Query: 567 RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE 626
           + +P  SWIEV+ + H F +GD  H + ++IY  ++ + + + K GYV     +L DV+E
Sbjct: 493 KKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEE 552

Query: 627 QE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
           +E + +L YHSEKLAVA+G++N     P++++++ R+C DCHNA K I+ + GR I++RD
Sbjct: 553 EEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRLILLRD 612

Query: 686 ASRFHHFKDGMCSCGDYW 703
           ++RFHHF+ G CSCGDYW
Sbjct: 613 SNRFHHFRGGSCSCGDYW 630



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 130/295 (44%), Gaps = 54/295 (18%)

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
           +I  ++  G +  A+  FD   EK  V WN ++A Y  +G  EEA  L+    +      
Sbjct: 12  MISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTE------ 65

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
                                             D+++ +AL+  Y +WG++ +AR +FD
Sbjct: 66  ---------------------------------WDVISWNALMSGYVQWGKMSEARELFD 92

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
           +M  ++V+SWN +++GY   G   EA  LF+   +  +     T+ AV+S  +++G+ E 
Sbjct: 93  RMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYAQNGMLEE 148

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
              +F +M   +     A+ +  M+    +  ++DEA  L    P +   + W  +LT  
Sbjct: 149 ARRVFDAMPERN-----AVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS-WNTMLTGY 202

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
              G LE     A+ ++   P+K + ++  +L  Y+  G  +E  ++   + R G
Sbjct: 203 AQAGMLE----EAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCG 253



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 45/238 (18%)

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           D V  + ++  ++  G +  ARH FD    K+ +SWN ++A Y  +GR EEA  LF    
Sbjct: 5   DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 64

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM-SRDHKIKPRAMHYACMIELLGREGL 484
                 + +++ A++S   + G      E+F  M  RD       + +  M+    R G 
Sbjct: 65  ----EWDVISWNALMSGYVQWGKMSEARELFDRMPGRD------VVSWNIMVSGYARRGD 114

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA--------------------- 523
           + EA  L   AP +     W A+++    NG LE  +                       
Sbjct: 115 MVEARRLFDAAPVRDVFT-WTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQ 173

Query: 524 ------AEKLYGMEP-EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
                 A++L+ M P   ++++  +L  Y  +G L+EA  V  T+ +K      A SW
Sbjct: 174 RRMMDEAKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK-----DAVSW 226


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/600 (36%), Positives = 355/600 (59%), Gaps = 6/600 (1%)

Query: 107 NKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           N  + +++ +F ++L+    FD  S+T   +++A   L+  R    +       G   D+
Sbjct: 192 NSYFEDSIRVFVDMLDVGLSFD--STTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
           Y+   ++ ++ +CG     R LFD++ + +L+S N +I+G   + +   A  LF +L   
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                S T   +I        + + + + + +LK+G      VS AL  +Y +   ++ A
Sbjct: 310 GQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
           + +FDE  EK+   WN +I+GY  +G ++ A+ L+ EM    +  +  T + I+  C +L
Sbjct: 370 RQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQL 428

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
            +L   K  H  +       ++  ++ALVD Y+K G I +AR +FD M+ KNV++WNA+I
Sbjct: 429 GALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMI 488

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
            GYG HG G+EA++LF +ML +G+ P  VTFL++L ACS SGL   G EIF SM+ ++  
Sbjct: 489 TGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGF 548

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
           +P + HYACM+++LGR G L  A   I   P +    +W ALL AC ++ N E+   A++
Sbjct: 549 QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASK 608

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
           +L+ ++PE +  YV+L NIY++     +AA V + ++++ L   P C+ IE+  Q +VF 
Sbjct: 609 RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFT 668

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEE-KTLLPDV-DEQEQRVLSYHSEKLAVAF 643
           SGD+SH Q   I+  ++++  ++ + GY  E   T L DV DE+++ +++ HSEKLA+AF
Sbjct: 669 SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF 728

Query: 644 GLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           GLI+T   T ++I+++ R+C DCH A K I+ +T R IVVRDA+RFHHFK+G+CSCGDYW
Sbjct: 729 GLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 222/438 (50%), Gaps = 18/438 (4%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY   ISA   L   R    + ++ +  G   +L++ + ++ ++ +      AR++FD M
Sbjct: 115 TYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVM 174

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           PER+ V  N +I+G   +  + ++  +F+D+ +      S T AT++ A A L+   +G 
Sbjct: 175 PERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGM 234

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            +   A K G   +V+V   LI +YSKCG     + +FD++ +   + +N +I+GY  + 
Sbjct: 235 GIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNH 294

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
            +E A+ L+ E+  SG +++  T   +I +      L+ ++      ++ G  L    ++
Sbjct: 295 ETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVST 354

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           AL   Y +   ++ AR +FD+   K++ SWNA+I+GY  +G  + A+ LF++M+   + P
Sbjct: 355 ALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSP 413

Query: 432 NHVTFLAVLSACSRSG-LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           N VT  ++LSAC++ G LS   W     + +  +++        ++++  + G + EA  
Sbjct: 414 NPVTVTSILSACAQLGALSIGKW--VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQ 471

Query: 491 LIRGAPFKTTKNM--WAALLTACRVNGNLELGKFAAEKLY-----GMEPEKLSNYVVLLN 543
           L         KN+  W A++T   ++G+   GK A +  Y     G+ P  ++ ++ +L 
Sbjct: 472 LF---DLMVDKNVVTWNAMITGYGLHGH---GKEALKLFYEMLQSGIPPTGVT-FLSILY 524

Query: 544 IYNSSGKLKEAAEVIRTL 561
             + SG + E  E+  ++
Sbjct: 525 ACSHSGLVSEGNEIFHSM 542



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 217/460 (47%), Gaps = 42/460 (9%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           ++ ++ ++ + ++  G   DL    ++       G +   R+LF+++ + +L   N++I 
Sbjct: 26  TLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIR 85

Query: 205 GMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
           G  D+G    +  L+  L +  +    + T+A  I A++ LE   VG  LH+ ++  G  
Sbjct: 86  GFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVA 145

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
            N+FV  A++D+Y K    E A+ VFD M E+ TV WNT+I+G++ + Y E+++ ++ +M
Sbjct: 146 SNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDM 205

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
            D G+  D  T + ++     L              + G   D+   + L+  YSK G+ 
Sbjct: 206 LDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKS 265

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA- 442
              R +FD++   ++IS+NA+I+GY  +   E AV LF ++L +G R N  T + ++   
Sbjct: 266 CKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVY 325

Query: 443 -------CSR--SGLSERGWEIFQ-SMSR-------------------DHKIKPRAMHYA 473
                   SR    LS +   I Q S+S                    D   +     + 
Sbjct: 326 LPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWN 385

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKN--MWAALLTACRVNGNLELGKFAAEKLYGM- 530
            MI    + GL D A +L +    + + N     ++L+AC   G L +GK+    ++G+ 
Sbjct: 386 AMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGKW----VHGLI 441

Query: 531 EPEKLSNYV----VLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           + E+L + V     L+++Y   G + EA ++   +  K +
Sbjct: 442 KSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481



 Score = 88.2 bits (217), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 110/217 (50%), Gaps = 6/217 (2%)

Query: 230 GSRTFATMIRASAGL-ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
           G R F T++  +  L +L+ +  QL    +  G   ++     L   +   G++   + +
Sbjct: 13  GQRFFLTLLNNATTLSQLLQIQAQL----ILHGIHYDLSSITKLTHKFFDLGAVAHVRQL 68

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSMIIRICTRLAS 347
           F+++S+     +N +I G++ +G  + ++ LY  +R  + ++ D+FT++  I   +RL  
Sbjct: 69  FNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLED 128

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
                  HA  +  G   ++   SA+VD Y K+ R E AR VFD M  ++ + WN +I+G
Sbjct: 129 ERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISG 188

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           +  +   E+++ +F  ML  G+  +  T   VL+A +
Sbjct: 189 FSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVA 225


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 216/600 (36%), Positives = 355/600 (59%), Gaps = 6/600 (1%)

Query: 107 NKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           N  + +++ +F ++L+    FD  S+T   +++A   L+  R    +       G   D+
Sbjct: 192 NSYFEDSIRVFVDMLDVGLSFD--STTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDV 249

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
           Y+   ++ ++ +CG     R LFD++ + +L+S N +I+G   + +   A  LF +L   
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                S T   +I        + + + + + +LK+G      VS AL  +Y +   ++ A
Sbjct: 310 GQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFA 369

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
           + +FDE  EK+   WN +I+GY  +G ++ A+ L+ EM    +  +  T + I+  C +L
Sbjct: 370 RQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQL 428

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
            +L   K  H  +       ++  ++ALVD Y+K G I +AR +FD M+ KNV++WNA+I
Sbjct: 429 GALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMI 488

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
            GYG HG G+EA++LF +ML +G+ P  VTFL++L ACS SGL   G EIF SM+ ++  
Sbjct: 489 TGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGF 548

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
           +P + HYACM+++LGR G L  A   I   P +    +W ALL AC ++ N E+   A++
Sbjct: 549 QPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASK 608

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
           +L+ ++PE +  YV+L NIY++     +AA V + ++++ L   P C+ IE+  Q +VF 
Sbjct: 609 RLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFT 668

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEE-KTLLPDV-DEQEQRVLSYHSEKLAVAF 643
           SGD+SH Q   I+  ++++  ++ + GY  E   T L DV DE+++ +++ HSEKLA+AF
Sbjct: 669 SGDRSHPQATAIFEMLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAF 728

Query: 644 GLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           GLI+T   T ++I+++ R+C DCH A K I+ +T R IVVRDA+RFHHFK+G+CSCGDYW
Sbjct: 729 GLISTKPGTEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 222/438 (50%), Gaps = 18/438 (4%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY   ISA   L   R    + ++ +  G   +L++ + ++ ++ +      AR++FD M
Sbjct: 115 TYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVM 174

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           PER+ V  N +I+G   +  + ++  +F+D+ +      S T AT++ A A L+   +G 
Sbjct: 175 PERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGM 234

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            +   A K G   +V+V   LI +YSKCG     + +FD++ +   + +N +I+GY  + 
Sbjct: 235 GIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNH 294

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
            +E A+ L+ E+  SG +++  T   +I +      L+ ++      ++ G  L    ++
Sbjct: 295 ETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVST 354

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           AL   Y +   ++ AR +FD+   K++ SWNA+I+GY  +G  + A+ LF++M+   + P
Sbjct: 355 ALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSP 413

Query: 432 NHVTFLAVLSACSRSG-LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           N VT  ++LSAC++ G LS   W     + +  +++        ++++  + G + EA  
Sbjct: 414 NPVTVTSILSACAQLGALSIGKW--VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQ 471

Query: 491 LIRGAPFKTTKNM--WAALLTACRVNGNLELGKFAAEKLY-----GMEPEKLSNYVVLLN 543
           L         KN+  W A++T   ++G+   GK A +  Y     G+ P  ++ ++ +L 
Sbjct: 472 LF---DLMVDKNVVTWNAMITGYGLHGH---GKEALKLFYEMLQSGIPPTGVT-FLSILY 524

Query: 544 IYNSSGKLKEAAEVIRTL 561
             + SG + E  E+  ++
Sbjct: 525 ACSHSGLVSEGNEIFHSM 542



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 218/460 (47%), Gaps = 42/460 (9%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           ++ ++ ++ + ++  G   DL    ++       G +   R+LF+++ + +L   N++I 
Sbjct: 26  TLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIR 85

Query: 205 GMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
           G  D+G    +  L+  L ++ +    + T+A  I A++ LE   VG  LH+ ++  G  
Sbjct: 86  GFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVA 145

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
            N+FV  A++D+Y K    E A+ VFD M E+ TV WNT+I+G++ + Y E+++ ++ +M
Sbjct: 146 SNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDM 205

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
            D G+  D  T + ++     L              + G   D+   + L+  YSK G+ 
Sbjct: 206 LDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKS 265

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA- 442
              R +FD++   ++IS+NA+I+GY  +   E AV LF ++L +G R N  T + ++   
Sbjct: 266 CKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVY 325

Query: 443 -------CSR--SGLSERGWEIFQ-SMSR-------------------DHKIKPRAMHYA 473
                   SR    LS +   I Q S+S                    D   +     + 
Sbjct: 326 LPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWN 385

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKN--MWAALLTACRVNGNLELGKFAAEKLYGM- 530
            MI    + GL D A +L +    + + N     ++L+AC   G L +GK+    ++G+ 
Sbjct: 386 AMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGKW----VHGLI 441

Query: 531 EPEKLSNYV----VLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           + E+L + V     L+++Y   G + EA ++   +  K +
Sbjct: 442 KSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 110/217 (50%), Gaps = 6/217 (2%)

Query: 230 GSRTFATMIRASAGL-ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
           G R F T++  +  L +L+ +  QL    +  G   ++     L   +   G++   + +
Sbjct: 13  GQRFFLTLLNNATTLSQLLQIQAQL----ILHGIHYDLSSITKLTHKFFDLGAVAHVRQL 68

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSMIIRICTRLAS 347
           F+++S+     +N +I G++ +G  + ++ LY  +R  + ++ D+FT++  I   +RL  
Sbjct: 69  FNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLED 128

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
                  HA  +  G   ++   SA+VD Y K+ R E AR VFD M  ++ + WN +I+G
Sbjct: 129 ERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISG 188

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           +  +   E+++ +F  ML  G+  +  T   VL+A +
Sbjct: 189 FSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVA 225


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 240/640 (37%), Positives = 369/640 (57%), Gaps = 50/640 (7%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           A+++FE +  + G    + +   ++ AC  + +    K+V  Y L +G   D+++ N V+
Sbjct: 214 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVV 273

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF------------- 219
            M+ +CGMM +A ++F+ M  +++VS N ++ G    G + +A  LF             
Sbjct: 274 DMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVV 333

Query: 220 ------------------LDLWEEFSDCGSR-TFATMIRASAGLELISV---GKQLHSCA 257
                             LD++ +   CGS     T++   +G  L      GK+ H  A
Sbjct: 334 TWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHA 393

Query: 258 LKMGF-------GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK--TTVGWNTIIAGYA 308
           +K          GD++ V  ALIDMYSKC S + A+ +FD +  K  + V W  +I G A
Sbjct: 394 IKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNA 453

Query: 309 LHGYSEEALDLYYEM--RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF--G 364
            HG + EAL+L+ +M   D+ V  + FT S  +  C RL +L   +Q HA ++R+ F   
Sbjct: 454 QHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESA 513

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
           +  VAN  L+D YSK G ++ AR VFD M  +N +SW +L+ GYG HGRGEEA+++F +M
Sbjct: 514 MLFVAN-CLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEM 572

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
              G+ P+ VTF+ VL ACS SG+ ++G   F  M++D  + P A HYACM++LL R G 
Sbjct: 573 QKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGR 632

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           LDEA  LIRG P K T  +W ALL+ACRV  N+ELG++AA +L  +E     +Y +L NI
Sbjct: 633 LDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNI 692

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           Y ++   K+ A +   ++  G++  P CSW++ +K    F +GD SH  +++IY  +  +
Sbjct: 693 YANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDL 752

Query: 605 MLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
           M  I   GYVP+ +  L DVD++E+  +LS HSEKLA+A+G++ T+   P++I ++ R C
Sbjct: 753 MQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRAC 812

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCH+A   I+++   EI+VRD+SRFHHFK+G CSC  YW
Sbjct: 813 GDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 143/478 (29%), Positives = 232/478 (48%), Gaps = 60/478 (12%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  ++ AC  + S R    V + + ++GFE ++++ N ++ M+ RCG   +AR++FDEM
Sbjct: 128 TFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEM 187

Query: 192 PER---NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGL 244
            ER   +LVS N I+A  +  GD + A  +F  + E   D G R    +   ++ A A +
Sbjct: 188 RERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTE---DLGIRPDAVSLVNVLPACASV 244

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN--- 301
              S GKQ+H  AL+ G  ++VFV  A++DMY+KCG +E+A  VF+ M  K  V WN   
Sbjct: 245 GAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMV 304

Query: 302 --------------------------------TIIAGYALHGYSEEALDLYYEMRDSGVK 329
                                            +IAGYA  G   EALD++ +MR  G +
Sbjct: 305 TGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSE 364

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVR-------HGFGLDIVANSALVDFYSKWGR 382
            +  T   ++  C    +L H K+ H   ++       +  G D++  +AL+D YSK   
Sbjct: 365 PNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKS 424

Query: 383 IEDARHVFDKMLCKN--VISWNALIAGYGNHGRGEEAVELFEQMLL--NGMRPNHVTFLA 438
            + AR +FD +  K+  V++W  LI G   HG   EA+ELF QML   N + PN  T   
Sbjct: 425 PKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISC 484

Query: 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK 498
            L AC+R G    G +I   + R+           C+I++  + G +D A  +      +
Sbjct: 485 ALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR 544

Query: 499 TTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
              + W +L+T   ++G  E  L  F   +  G+ P+ ++ +VV+L   + SG + + 
Sbjct: 545 NGVS-WTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVT-FVVVLYACSHSGMVDQG 600



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 145/306 (47%), Gaps = 19/306 (6%)

Query: 272 LIDMYSKCGSIEDAQGVFDEM--SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
           +I MY    S   A  V   +  S  T   WN +I      G+ E+ L LY  M+  G +
Sbjct: 64  IISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWR 123

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            DH+TF  +++ C  + S       HA +   GF  ++   + LV  Y + G  E+AR V
Sbjct: 124 PDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQV 183

Query: 390 FDKMLCKNV---ISWNALIAGYGNHGRGEEAVELFEQMLLN-GMRPNHVTFLAVLSACSR 445
           FD+M  + V   +SWN+++A Y   G    A+++FE+M  + G+RP+ V+ + VL AC+ 
Sbjct: 184 FDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACAS 243

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
            G   RG ++     R    +   +  A ++++  + G+++EA  +      K   + W 
Sbjct: 244 VGAWSRGKQVHGYALRSGLFEDVFVGNA-VVDMYAKCGMMEEANKVFERMKVKDVVS-WN 301

Query: 506 ALLTACRVNGNLELGKF--AAEKLYGMEPEKLSNYVV----LLNIYNSSGKLKEAAEVIR 559
           A++T     G  ++G+F  A      +  EK+   VV    ++  Y   G   EA +V R
Sbjct: 302 AMVT-----GYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFR 356

Query: 560 TLRRKG 565
            +R  G
Sbjct: 357 QMRLCG 362



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 3/189 (1%)

Query: 112 EALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD-LYMRN 169
           EALELF ++L+ +      + T    + AC  L ++R  +++ +Y+L   FE   L++ N
Sbjct: 460 EALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVAN 519

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+ + G +  AR +FD M +RN VS   ++ G    G   EA  +F ++ +     
Sbjct: 520 CLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVP 579

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
              TF  ++ A +   ++  G    +   K  G          ++D+ S+ G +++A  +
Sbjct: 580 DGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMEL 639

Query: 289 FDEMSEKTT 297
              M  K T
Sbjct: 640 IRGMPMKPT 648


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/594 (34%), Positives = 350/594 (58%), Gaps = 15/594 (2%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
            ++ ++F  ++ EG       TY +++  C  L +    +++ + +L TGF+ ++Y+ + 
Sbjct: 420 NKSFQIFTQMQIEG-IVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSV 478

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ M+ + G +  A ++F  + E ++VS   +IAG      + EA  LF ++ ++     
Sbjct: 479 LIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSD 538

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           +  FA+ I A AG++ +  G+Q+H+ +   G+ D++ +  AL+ +Y++CG + +A   FD
Sbjct: 539 NIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFD 598

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           ++  K  V WN++++G+A  GY EEAL+++ +M  +G++++ FTF   +     +A++  
Sbjct: 599 QIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRI 658

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            KQ H  + + G+  +   ++AL+  Y+K G I+D             ISWN++I GY  
Sbjct: 659 GKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD-------------ISWNSMITGYSQ 705

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           HG G EA++LFE M    + PNHVTF+ VLSACS  GL + G   F+SMS  H + P+  
Sbjct: 706 HGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPE 765

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HYAC+++LLGR GLL  A   +   P +    +W  LL+AC V+ N+++G+FAA  L  +
Sbjct: 766 HYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLEL 825

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           EP+  + YV++ N+Y  SGK        + ++ +G++  P  SW+EV    H F +GDQ+
Sbjct: 826 EPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQN 885

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTS 649
           H +   IY  +  +    +++GYVP   +LL D +  Q+      HSE+LA+AFGL++ +
Sbjct: 886 HPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLT 945

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             TPL + ++ R+C DCHN IK ++ +T R I+VRD+ RFHHFK G CSC DYW
Sbjct: 946 SSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 200/405 (49%), Gaps = 33/405 (8%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           ++SAC  +      K++   +L  GF  + Y+ N ++ ++ R G +  A ++F  M +R+
Sbjct: 257 VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRD 316

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLF--LDLWEEFSDCGSRTFATMIRASAGLELISVGKQL 253
            VS N +I+G+   G    A  LF  ++L  +  DC   T A+++ A A +  +  GKQ 
Sbjct: 317 RVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDC--VTVASLLSACASVGALPNGKQF 374

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           HS A+K G   ++ V  +L+D+Y KC  I+ A   F                 Y      
Sbjct: 375 HSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFF---------------LCYGQLDNL 419

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
            ++  ++ +M+  G+  + FT+  I++ CT L + +  +Q H  +++ GF  ++  +S L
Sbjct: 420 NKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVL 479

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           +D Y+K G+++ A  +F ++   +V+SW A+IAGY  H +  EA+ LF++M   G++ ++
Sbjct: 480 IDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDN 539

Query: 434 VTFLAVLSACSRSGLSERGWEI-----FQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           + F + +SAC+     ++G +I         S D  I         ++ L  R G + EA
Sbjct: 540 IGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIGN------ALVSLYARCGKVREA 593

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGME 531
           +A       K   + W +L++    +G  E  L  FA     G+E
Sbjct: 594 YAAFDQIYAKDNVS-WNSLVSGFAQSGYFEEALNIFAQMNKAGLE 637



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 173/349 (49%), Gaps = 30/349 (8%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           S R V+++ +  +++GFE   ++ N ++ ++ + G +  A+++F+ +  R+ VS   +I+
Sbjct: 179 SFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMIS 238

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
           G+  +G   EA LLF  +              ++ A   +E    GKQLH   LK GF  
Sbjct: 239 GLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLVLKQGFSS 284

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
             +V  AL+ +YS+ G++  A+ +F  MS++  V +N++I+G A  GY   AL L+ +M 
Sbjct: 285 ETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMN 344

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
               K D  T + ++  C  + +L + KQ H+  ++ G   DIV   +L+D Y K   I+
Sbjct: 345 LDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIK 404

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            A   F   LC            YG      ++ ++F QM + G+ PN  T+ ++L  C+
Sbjct: 405 TAHEFF---LC------------YGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCT 449

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
             G ++ G +I   + +    +      + +I++  + G LD A  + R
Sbjct: 450 TLGATDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKHGKLDHALKIFR 497



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 114/467 (24%), Positives = 206/467 (44%), Gaps = 63/467 (13%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           + G    S T+  L+  C+  RS  +  ++  + L+ G               + C    
Sbjct: 74  QHGVRANSQTFLWLLEGCLNSRSFYDGLKLIDFYLAFG--------------DLNC---- 115

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
            A  +FDEMP R+L   N I    I          LF  +  +  +   R FA ++R  +
Sbjct: 116 -AVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRGCS 174

Query: 243 GLEL-ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
           G  +     +Q+H+  +  GF  + F+   LID+Y K G +  A+ VF+ +  + +V W 
Sbjct: 175 GNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWV 234

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
            +I+G + +GY EEA+ L+ +              +++  CT++   E  KQ H  +++ 
Sbjct: 235 AMISGLSQNGYEEEAMLLFCQ--------------IVLSACTKVEFFEFGKQLHGLVLKQ 280

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           GF  +    +ALV  YS+ G +  A  +F  M  ++ +S+N+LI+G    G    A+ LF
Sbjct: 281 GFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALF 340

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERG-----WEIFQSMSRD-------------- 462
           ++M L+  +P+ VT  ++LSAC+  G    G     + I   M+ D              
Sbjct: 341 KKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKC 400

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK---TTKNMWAALLTACRVNGNLEL 519
             IK     + C     G+   L+++F +      +     +  + ++L  C   G  +L
Sbjct: 401 SDIKTAHEFFLCY----GQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDL 456

Query: 520 GKFAAEKLYGMEPEKLSNYV--VLLNIYNSSGKLKEAAEVIRTLRRK 564
           G+    ++     +  + YV  VL+++Y   GKL  A ++ R L+  
Sbjct: 457 GEQIHTQVLKTGFQ-FNVYVSSVLIDMYAKHGKLDHALKIFRRLKEN 502


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/621 (37%), Positives = 357/621 (57%), Gaps = 54/621 (8%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           ++ AC  L+++ + K V    +  G   D+++ N ++  + +CG+M +A ++F+ M  ++
Sbjct: 126 ILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 185

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEE---------------FSDCGSR-------- 232
           +VS N ++AG   SG++  AF LF ++ +E               +S  G          
Sbjct: 186 VVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFR 245

Query: 233 ------------TFATMIRASAGLELISVGKQLHSCALKM----------GFGDNVFVSC 270
                       T  +++ A A L   S G ++H+ +LK           G  +++ V  
Sbjct: 246 QMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYN 305

Query: 271 ALIDMYSKCGSIEDAQGVFDE--MSEKTTVGWNTIIAGYALHGYSEEALDLYYEM--RDS 326
           ALIDMYSKC S + A+ +FD+  + E+  V W  +I G+A +G S +AL L+ EM     
Sbjct: 306 ALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 365

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH---GFGLDIVANSALVDFYSKWGRI 383
           GV  + +T S I+  C  LA++   KQ HA ++RH         VAN  L++ YSK G +
Sbjct: 366 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVAN-CLINMYSKCGDV 424

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           + ARHVFD M  K+ ISW +++ GYG HGRG EA+++F++M   G  P+ +TFL VL AC
Sbjct: 425 DTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYAC 484

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S  G+ ++G   F SMS D+ + PRA HYA  I+LL R G LD+A+  ++  P + T  +
Sbjct: 485 SHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVV 544

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           W ALL+ACRV+ N+EL + A  KL  M  E   +Y ++ NIY ++G+ K+ A +   +++
Sbjct: 545 WVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKK 604

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
            G++  P CSW++ +K    F  GD+SH  + +IY  ++ ++  I   GYVPE    L D
Sbjct: 605 SGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHD 664

Query: 624 VDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           VDE+E+  +L  HSEKLA+A+GL+ T    P++I ++ R+C DCH+A   I+ +   EIV
Sbjct: 665 VDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIV 724

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           VRD SRFHHFK+G CSCG YW
Sbjct: 725 VRDPSRFHHFKNGSCSCGGYW 745



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 122/473 (25%), Positives = 215/473 (45%), Gaps = 66/473 (13%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T   ++ AC  L S R        +   GFE ++++ N ++ M+ RCG + +A  +FDE+
Sbjct: 12  TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 71

Query: 192 PER---NLVSCNMIIAGMIDSGDYLEAFLLFLDL--------WEEFSDCGSRTFATMIRA 240
            +R   +++S N I++  + S +   A  LF  +          E SD  S     ++ A
Sbjct: 72  TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIIS--IVNILPA 129

Query: 241 SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW 300
              L+ +   K++H  A++ G   +VFV  ALID Y+KCG +E+A  VF+ M  K  V W
Sbjct: 130 CGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSW 189

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII--------------------- 339
           N ++AGY+  G  + A +L+  MR   + +D  T++ +I                     
Sbjct: 190 NAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIF 249

Query: 340 --------------RICTRLASLEHAKQAHAGLVRH----------GFGLDIVANSALVD 375
                           C  L +     + HA  +++          G   D++  +AL+D
Sbjct: 250 SGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALID 309

Query: 376 FYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEAVELFEQMLLN--GMRP 431
            YSK    + AR +FD +    +NV++W  +I G+  +G   +A++LF +M+    G+ P
Sbjct: 310 MYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAP 369

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA-CMIELLGREGLLDEAFA 490
           N  T   +L AC+       G +I   + R H+    A   A C+I +  + G +D A  
Sbjct: 370 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARH 429

Query: 491 LIRGAPFKTTKNMWAALLTACRVN--GNLELGKFAAEKLYGMEPEKLSNYVVL 541
           +      K+  + W +++T   ++  G+  L  F   +  G  P+ ++  VVL
Sbjct: 430 VFDSMSQKSAIS-WTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVL 481



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 118/266 (44%), Gaps = 20/266 (7%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M  +G ++DHFT   +++ C  L S       H  +  +GF  ++   +ALV  YS+ G 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 383 IEDARHVFDKMLCK---NVISWNALIAGYGNHGRGEEAVELFEQMLL------NGMRPNH 433
           +E+A  +FD++  +   +VISWN++++ +        A++LF +M L         R + 
Sbjct: 61  LEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDI 120

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
           ++ + +L AC       +  E+  +  R+       +  A +I+   + GL++ A  +  
Sbjct: 121 ISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNA-LIDAYAKCGLMENAVKVFN 179

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS----NYVVLLNIYNSSG 549
              FK   + W A++     +GN    K A E    M  E +      +  ++  Y+  G
Sbjct: 180 MMEFKDVVS-WNAMVAGYSQSGNF---KAAFELFKNMRKENIPLDMVTWTAVIAGYSQRG 235

Query: 550 KLKEAAEVIRTLRRKGLRMLPACSWI 575
              EA  V R +   G   LP C  I
Sbjct: 236 CSHEALNVFRQMIFSG--SLPNCVTI 259



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 103/226 (45%), Gaps = 16/226 (7%)

Query: 111 REALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML-STGFEPDLY-M 167
            +AL+LF E++    G    + T   ++ AC  L +IR  K++ +Y+L    ++   Y +
Sbjct: 351 NDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFV 410

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            N ++ M+ +CG +  AR +FD M +++ +S   ++ G    G   EA    LD++++  
Sbjct: 411 ANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEA----LDIFDKMR 466

Query: 228 DCG----SRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
             G      TF  ++ A +   ++  G     S +   G           ID+ ++ G +
Sbjct: 467 KAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRL 526

Query: 283 EDAQGVFDEMS-EKTTVGWNTIIAGYALHG---YSEEALDLYYEMR 324
           + A     +M  E T V W  +++   +H     +E AL+   EM 
Sbjct: 527 DKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMN 572


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/621 (37%), Positives = 357/621 (57%), Gaps = 54/621 (8%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           ++ AC  L+++ + K V    +  G   D+++ N ++  + +CG+M +A ++F+ M  ++
Sbjct: 233 ILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 292

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEE---------------FSDCGSR-------- 232
           +VS N ++AG   SG++  AF LF ++ +E               +S  G          
Sbjct: 293 VVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFR 352

Query: 233 ------------TFATMIRASAGLELISVGKQLHSCALKM----------GFGDNVFVSC 270
                       T  +++ A A L   S G ++H+ +LK           G  +++ V  
Sbjct: 353 QMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYN 412

Query: 271 ALIDMYSKCGSIEDAQGVFDE--MSEKTTVGWNTIIAGYALHGYSEEALDLYYEM--RDS 326
           ALIDMYSKC S + A+ +FD+  + E+  V W  +I G+A +G S +AL L+ EM     
Sbjct: 413 ALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPY 472

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH---GFGLDIVANSALVDFYSKWGRI 383
           GV  + +T S I+  C  LA++   KQ HA ++RH         VAN  L++ YSK G +
Sbjct: 473 GVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVAN-CLINMYSKCGDV 531

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           + ARHVFD M  K+ ISW +++ GYG HGRG EA+++F++M   G  P+ +TFL VL AC
Sbjct: 532 DTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYAC 591

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S  G+ ++G   F SMS D+ + PRA HYA  I+LL R G LD+A+  ++  P + T  +
Sbjct: 592 SHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVV 651

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           W ALL+ACRV+ N+EL + A  KL  M  E   +Y ++ NIY ++G+ K+ A +   +++
Sbjct: 652 WVALLSACRVHSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKK 711

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
            G++  P CSW++ +K    F  GD+SH  + +IY  ++ ++  I   GYVPE    L D
Sbjct: 712 SGIKKRPGCSWVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHD 771

Query: 624 VDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           VDE+E+  +L  HSEKLA+A+GL+ T    P++I ++ R+C DCH+A   I+ +   EIV
Sbjct: 772 VDEEEKNNLLVEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIV 831

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           VRD SRFHHFK+G CSCG YW
Sbjct: 832 VRDPSRFHHFKNGSCSCGGYW 852



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 122/473 (25%), Positives = 215/473 (45%), Gaps = 66/473 (13%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T   ++ AC  L S R        +   GFE ++++ N ++ M+ RCG + +A  +FDE+
Sbjct: 119 TLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEI 178

Query: 192 PER---NLVSCNMIIAGMIDSGDYLEAFLLFLDL--------WEEFSDCGSRTFATMIRA 240
            +R   +++S N I++  + S +   A  LF  +          E SD  S     ++ A
Sbjct: 179 TQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIIS--IVNILPA 236

Query: 241 SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW 300
              L+ +   K++H  A++ G   +VFV  ALID Y+KCG +E+A  VF+ M  K  V W
Sbjct: 237 CGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSW 296

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII--------------------- 339
           N ++AGY+  G  + A +L+  MR   + +D  T++ +I                     
Sbjct: 297 NAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIF 356

Query: 340 --------------RICTRLASLEHAKQAHAGLVRH----------GFGLDIVANSALVD 375
                           C  L +     + HA  +++          G   D++  +AL+D
Sbjct: 357 SGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALID 416

Query: 376 FYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEAVELFEQMLLN--GMRP 431
            YSK    + AR +FD +    +NV++W  +I G+  +G   +A++LF +M+    G+ P
Sbjct: 417 MYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAP 476

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA-CMIELLGREGLLDEAFA 490
           N  T   +L AC+       G +I   + R H+    A   A C+I +  + G +D A  
Sbjct: 477 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARH 536

Query: 491 LIRGAPFKTTKNMWAALLTACRVN--GNLELGKFAAEKLYGMEPEKLSNYVVL 541
           +      K+  + W +++T   ++  G+  L  F   +  G  P+ ++  VVL
Sbjct: 537 VFDSMSQKSAIS-WTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVL 588



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 132/545 (24%), Positives = 225/545 (41%), Gaps = 110/545 (20%)

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           V+  ++ CG    A  + + +     V  N++I   I  G    A  +   +    +   
Sbjct: 57  VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLD 116

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             T   +++A   L     G   H      GF  NVF+  AL+ MYS+CGS+E+A  +FD
Sbjct: 117 HFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 176

Query: 291 EMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEM------RDSGVKMDHFTFSMIIRI 341
           E++++     + WN+I++ +     +  ALDL+ +M      + +  + D  +   I+  
Sbjct: 177 EITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPA 236

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C  L ++   K+ H   +R+G  LD+   +AL+D Y+K G +E+A  VF+ M  K+V+SW
Sbjct: 237 CGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSW 296

Query: 402 NALIAGYGNHG---------------------------------RG--EEAVELFEQMLL 426
           NA++AGY   G                                 RG   EA+ +F QM+ 
Sbjct: 297 NAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIF 356

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIF------------------------------ 456
           +G  PN VT ++VLSAC+  G   +G EI                               
Sbjct: 357 SGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALID 416

Query: 457 -----------QSMSRDHKIKPR-AMHYACMIELLGREGLLDEAFAL---IRGAPFKTTK 501
                      +S+  D  ++ R  + +  MI    + G  ++A  L   +   P+    
Sbjct: 417 MYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAP 476

Query: 502 NMW--AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV---LLNIYNSSGKLKEAAE 556
           N +  + +L AC     + +GK     +        S Y V   L+N+Y+  G +  A  
Sbjct: 477 NAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARH 536

Query: 557 VIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPE 616
           V  ++ +K      A SW  +       ++G   H +  E     D+M     K G+VP+
Sbjct: 537 VFDSMSQKS-----AISWTSM-------MTGYGMHGRGSEALDIFDKM----RKAGFVPD 580

Query: 617 EKTLL 621
           + T L
Sbjct: 581 DITFL 585



 Score = 49.7 bits (117), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 54/226 (23%), Positives = 103/226 (45%), Gaps = 16/226 (7%)

Query: 111 REALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML-STGFEPDLY-M 167
            +AL+LF E++    G    + T   ++ AC  L +IR  K++ +Y+L    ++   Y +
Sbjct: 458 NDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFV 517

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            N ++ M+ +CG +  AR +FD M +++ +S   ++ G    G   EA    LD++++  
Sbjct: 518 ANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEA----LDIFDKMR 573

Query: 228 DCG----SRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
             G      TF  ++ A +   ++  G     S +   G           ID+ ++ G +
Sbjct: 574 KAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRL 633

Query: 283 EDAQGVFDEMS-EKTTVGWNTIIAGYALHG---YSEEALDLYYEMR 324
           + A     +M  E T V W  +++   +H     +E AL+   EM 
Sbjct: 634 DKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMN 679


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/608 (35%), Positives = 366/608 (60%), Gaps = 5/608 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I  L+ N    +AL++ + +  EG   +   T  +++  C  L  I     +  Y++ 
Sbjct: 286 AMISGLIQNGNAAQALDVLDEMRLEG-IKMNFVTVVSILPVCPQLGDISTAMLIHLYVIK 344

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G E DL++ N ++ M+ + G + DAR+ F +M   ++VS N IIA    + D + A   
Sbjct: 345 HGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGF 404

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF-GDNVFVSCALIDMYS 277
           F+ +          T  ++    A        + +H   ++ G+  ++V +  A++DMY+
Sbjct: 405 FVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYA 464

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFS 336
           K G ++ A  VF+ +  K  + WNT+I GYA +G + EA+++Y  M +   +  +  T+ 
Sbjct: 465 KLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWV 524

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            I+     + +L+   + H  +++    LD+   + L+D Y K GR+ DA  +F ++  +
Sbjct: 525 SILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE 584

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           + ++WNA+I+ +G HG  E+ ++LF +ML  G++P+HVTF+++LSACS SG  E G   F
Sbjct: 585 SSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCF 644

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
           + M +++ IKP   HY CM++LLGR G L+ A+  I+  P +   ++W ALL ACR++GN
Sbjct: 645 RLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGN 703

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
           +ELGKFA+++L+ ++ + +  YV+L NIY + GK +   +V    R +GL+  P  S IE
Sbjct: 704 IELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIE 763

Query: 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYH 635
           V ++  VF +G+QSH + KEIY ++  +  ++   GY+P+   +L DV+E E + +L+ H
Sbjct: 764 VNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSH 823

Query: 636 SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
           SE+LA+AFG+I+T   +P++I ++ R+C DCHNA K I+ +T REIVVRD++RFHHFKDG
Sbjct: 824 SERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDG 883

Query: 696 MCSCGDYW 703
           +CSCGDYW
Sbjct: 884 ICSCGDYW 891



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/404 (28%), Positives = 210/404 (51%), Gaps = 23/404 (5%)

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA------FLL 218
           +++  R++ ++   G +  +R  FD++P++++ + N +I+  + +G + EA       LL
Sbjct: 151 IFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLL 210

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
             ++  +F      TF  +++A   L     G+++H  A K+GF  NVFV+ +LI MYS+
Sbjct: 211 VSEIRPDF-----YTFPPVLKACGTL---VDGRKIHCWAFKLGFQWNVFVAASLIHMYSR 262

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            G    A+ +FD+M  +    WN +I+G   +G + +ALD+  EMR  G+KM+  T   I
Sbjct: 263 FGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSI 322

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           + +C +L  +  A   H  +++HG   D+  ++AL++ Y+K+G +EDAR  F +M   +V
Sbjct: 323 LPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDV 382

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SWN++IA Y  +     A   F +M LNG +P+ +T +++ S  ++S   +    +   
Sbjct: 383 VSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGF 442

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           + R   +    +    ++++  + GLLD A  +    P K   + W  L+T    NG   
Sbjct: 443 IMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVIS-WNTLITGYAQNG--- 498

Query: 519 LGKFAAEKLYGME--PEKLSN---YVVLLNIYNSSGKLKEAAEV 557
           L   A E    ME   E + N   +V +L  Y   G L++  ++
Sbjct: 499 LASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKI 542



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 58/201 (28%), Positives = 96/201 (47%), Gaps = 20/201 (9%)

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
           AK  HA LV  G    I  ++ LV+ Y+  G +  +R  FD++  K+V +WN++I+ Y +
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 194

Query: 411 HGRGEEAVELFEQMLL-NGMRPNHVTFLAVLSACSR--SGLSERGWEIFQSMSRDHKIKP 467
           +G   EA+  F Q+LL + +RP+  TF  VL AC     G     W        +  +  
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVA- 253

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
                A +I +  R G    A +L    PF+   + W A+++    NGN      AA+ L
Sbjct: 254 -----ASLIHMYSRFGFTGIARSLFDDMPFRDMGS-WNAMISGLIQNGN------AAQAL 301

Query: 528 YGMEPEKLS----NYVVLLNI 544
             ++  +L     N+V +++I
Sbjct: 302 DVLDEMRLEGIKMNFVTVVSI 322


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/593 (36%), Positives = 340/593 (57%), Gaps = 1/593 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +AL LF  +  +        T    + +C  +  +   + V +Y    GF  D ++ N +
Sbjct: 153 DALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSL 212

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+  CG ++ A  LF  +  + +++ N +IAG + +GD+ E   +F  + E  +    
Sbjct: 213 IHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDE 272

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T  ++  A   L   ++G+ +   A + G   +  ++ AL+DMY+KCG ++ A+ +FD 
Sbjct: 273 VTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDR 332

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M  +  V W+ +I+GY       EAL ++ EM+ + V  +  T   ++  C  L +LE  
Sbjct: 333 MHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETG 392

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K  H+ + R    L ++  +ALVDFY+K G I+DA   F+ M  +N  +W ALI G  ++
Sbjct: 393 KWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIKGMASN 452

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           GR  EA+ELF  ML   + P  VTF+ VL ACS   L E G   F SM++D+ I PR  H
Sbjct: 453 GRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGICPRIEH 512

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           Y CM++LLGR GL+DEA+  IR  P +    +W ALL+AC V+ N+E+G+ A +++  ++
Sbjct: 513 YGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQIVPLD 572

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P    NY++L N Y S G+ K AA V + ++ KG+  +P CS IE++     F + D  H
Sbjct: 573 PCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFAEDSEH 632

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSD 650
            Q  EIY KV  M+  I   GY+P       DVDE E++V +S+HSEKLA+AFGL+ +  
Sbjct: 633 PQLTEIYEKVHEMIENIKMVGYIPNTADARLDVDEYEKQVSVSHHSEKLAIAFGLMKSRP 692

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              +++ ++ R+C DCH+A KLI+ V  REI+VRD +RFHHFKDG+CSC DYW
Sbjct: 693 GATIRLSKNLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 177/367 (48%), Gaps = 13/367 (3%)

Query: 184 ARRLF--DEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRA 240
           A RLF     P R+  S N++I   + +G   +A  LF+++ ++ +      T A  +++
Sbjct: 121 AIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKS 180

Query: 241 SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW 300
            + +  +SVG+ + + A K GF  + FV  +LI MY+ CG +  A  +F  +  K  + W
Sbjct: 181 CSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAW 240

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           N +IAGY  +G  +E ++++  M +     D  T   +   C RL      +        
Sbjct: 241 NAMIAGYVKNGDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEE 300

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
            G        +ALVD Y+K G ++ AR +FD+M  ++V++W+A+I+GY    R  EA+ +
Sbjct: 301 KGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAI 360

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERG-WEIFQSMSRDHKIKPRAMHYACMIELL 479
           F +M    + PN VT ++VLSAC+  G  E G W    S  R   +    +    +++  
Sbjct: 361 FNEMQGTEVNPNDVTMVSVLSACAVLGALETGKW--VHSYIRRKDLPLTVILGTALVDFY 418

Query: 480 GREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN----LELGKFAAEKLYGMEPEKL 535
            + G + +A       P + T   W AL+     NG     LEL  F++     +EP  +
Sbjct: 419 AKCGCIKDAVKAFESMPVRNTWT-WTALIKGMASNGRSREALEL--FSSMLEANIEPTDV 475

Query: 536 SNYVVLL 542
           +   VLL
Sbjct: 476 TFIGVLL 482


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/606 (36%), Positives = 351/606 (57%), Gaps = 2/606 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I  LV N  + ++++LF  +  +G   V SST  A++ A   L+ ++    +    L 
Sbjct: 179 TMINGLVKNCCFDDSIQLFREMVADG-VRVDSSTVTAVLPAAAELQELKVGMGIQCLALK 237

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF    Y+   ++ ++ +CG +  AR LF  +   +L++ N +I+G   +G    +  L
Sbjct: 238 IGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKL 297

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F +L        S T   +I   +    + +   +H   +K G   N  VS A   +Y+K
Sbjct: 298 FRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNK 357

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
              I+ A+ +FDE  EKT V WN +I+GY  +G +E A+ L+ EM  +    +  T + I
Sbjct: 358 LNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTI 417

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C +L SL   K  H  +       +I  ++ALVD Y+K G I +A  +FD M  KN 
Sbjct: 418 LSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNT 477

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           ++WN +I GYG HG G EA++L+ +ML  G  P+ VTFL+VL ACS +GL   G EIF +
Sbjct: 478 VTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHN 537

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M   ++I+P   HYACM+++LGR G L++A   I+  P +    +W  LL AC ++ + +
Sbjct: 538 MVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTD 597

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           + + A+E+L+ ++P  +  YV+L NIY+      +AA + + ++++ L   P C+ IEV 
Sbjct: 598 IARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVN 657

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSE 637
             PHVF+SGD+SH    +IY K++++  ++ + GY  E    L DV+E+E+ + ++ HSE
Sbjct: 658 GTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSE 717

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+AFGLI T     ++I+++ R+C DCH A K I+ +T R IVVRDA+RFHHFKDG+C
Sbjct: 718 KLAIAFGLITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGIC 777

Query: 698 SCGDYW 703
           SCGDYW
Sbjct: 778 SCGDYW 783



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 118/462 (25%), Positives = 233/462 (50%), Gaps = 10/462 (2%)

Query: 106 LNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           LN     ++ L+  L         + TY   ++AC    + + +  + ++ +  G+  ++
Sbjct: 87  LNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAAC---SNDKHLMLLHAHSIIDGYGSNV 143

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
           ++ + ++ ++ +   ++ AR++FD MPER+ V  N +I G++ +  + ++  LF ++  +
Sbjct: 144 FVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMVAD 203

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                S T   ++ A+A L+ + VG  +   ALK+GFG   +V   LI +YSKCG +  A
Sbjct: 204 GVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTA 263

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
           + +F  ++    + +N +I+G+  +G +E ++ L+ E+  SG ++   T   +I + +  
Sbjct: 264 RLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPF 323

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
             L  A   H   V+ G  L+   ++A    Y+K   I+ ARH+FD+   K V++WNA+I
Sbjct: 324 GHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMI 383

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG-LSERGWEIFQSMSRDHK 464
           +GY  +G  E A+ LF++M+     PN VT   +LSAC++ G LS   W     + +   
Sbjct: 384 SGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKW--VHHLIKSEN 441

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG-NLELGKFA 523
           ++P       ++++  + G + EA+ L      K T   W  ++    ++G   E  K  
Sbjct: 442 LEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVT-WNTMIFGYGLHGYGHEALKLY 500

Query: 524 AEKLY-GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
            E L+ G  P  ++ ++ +L   + +G + E  E+   +  K
Sbjct: 501 NEMLHLGYNPSAVT-FLSVLYACSHAGLVGEGEEIFHNMVNK 541


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/619 (37%), Positives = 357/619 (57%), Gaps = 7/619 (1%)

Query: 90  MKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV 149
           + K S    S I  L  NK + +A++ +  +   G      +   AL S+C  L  I   
Sbjct: 165 VDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISAL-SSCASLGCILLG 223

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           ++     +  G + D+ + N +L ++     + + +++F  M ER+ VS N +I  + DS
Sbjct: 224 QQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADS 283

Query: 210 GDYL-EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
           G  + EA  +FL++          TF  ++   + L    +  Q+H+  LK    D+  +
Sbjct: 284 GASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAI 343

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
             AL+  Y K G +E+ + +F  MSE+   V WN++I+GY  +    +A+DL + M   G
Sbjct: 344 ENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRG 403

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
            ++D FTF+ ++  C  +A+LE   + HA  +R     D+V  SALVD YSK GRI+ A 
Sbjct: 404 QRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYAS 463

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
             F+ M  +N+ SWN++I+GY  HG G+ A+ LF +M L+G  P+H+TF+ VLSACS  G
Sbjct: 464 RFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIG 523

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
           L + G+E F+SM+  + + PR  HY+CM++LLGR G LD+    I   P K    +W  +
Sbjct: 524 LVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTV 583

Query: 508 LTA-CRVNG-NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
           L A CR NG   ELG+ AAE L+ M+P+   NYV+L N+Y S GK ++ A   R +R   
Sbjct: 584 LGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAA 643

Query: 566 LRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD 625
           ++    CSW+ +K   HVF++GD SH +   IY K+  +  +I   GYVP+ K  L D++
Sbjct: 644 VKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLE 703

Query: 626 -EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVR 684
            E ++ +LSYHSEKLAVAF L   S   P++I+++ R+C DCH+A K I+ V  R IV+R
Sbjct: 704 PENKEELLSYHSEKLAVAFVLTRNSG-LPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLR 762

Query: 685 DASRFHHFKDGMCSCGDYW 703
           D++RFHHF+DG CSC DYW
Sbjct: 763 DSNRFHHFEDGKCSCRDYW 781



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 164/302 (54%), Gaps = 6/302 (1%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           +L  GF+ DL++ N ++ ++VR G  + AR+LFDEMP+RN V+   +I+G   +G   +A
Sbjct: 26  VLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDA 85

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRA-SAGLELISVGKQLHSCALKMGFGD-NVFVSCALI 273
             +  ++  E        F + IRA    +     G+Q+H  A++ G  D  V V   LI
Sbjct: 86  CGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLI 145

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           +MY+KCG I+ A+ VF  M +K +V WN++I G   +   E+A+  Y  MR +G+   +F
Sbjct: 146 NMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNF 205

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
                +  C  L  +   +Q H   ++ G  +D+  ++ L+  Y++  R+ + + VF  M
Sbjct: 206 ALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWM 265

Query: 394 LCKNVISWNALIAGYGNHGRG-EEAVELFEQMLLNGMRPNHVTF---LAVLSACSRSGLS 449
           L ++ +SWN +I    + G    EA+E+F +M+  G  PN VTF   LA +S+ S S LS
Sbjct: 266 LERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLS 325

Query: 450 ER 451
            +
Sbjct: 326 HQ 327



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/197 (30%), Positives = 102/197 (51%), Gaps = 2/197 (1%)

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
            H   LK GF  ++F+   LI++Y + G    A+ +FDEM ++  V W  +I+GY  +G 
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGM 81

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTR-LASLEHAKQAHAGLVRHGFG-LDIVAN 370
            E+A  +  EM   G   + F F   IR C   +      +Q H   +R G     +   
Sbjct: 82  PEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVG 141

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           + L++ Y+K G I+ AR VF  M+ K+ +SWN++I G   +   E+AV+ +  M   G+ 
Sbjct: 142 NGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLM 201

Query: 431 PNHVTFLAVLSACSRSG 447
           P++   ++ LS+C+  G
Sbjct: 202 PSNFALISALSSCASLG 218



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 54/97 (55%)

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414
           H  +++HGF  D+   + L++ Y + G    AR +FD+M  +N ++W  LI+GY  +G  
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
           E+A  + ++M+  G  PN   F + + AC  S L  R
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRR 119


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/608 (35%), Positives = 366/608 (60%), Gaps = 5/608 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I  L+ N    +AL++ + +  EG   +   T  +++  C  L  I     +  Y++ 
Sbjct: 286 AMISGLIQNGNAAQALDVLDEMRLEG-IKMNFVTVVSILPVCPQLGDISTAMLIHLYVIK 344

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G E DL++ N ++ M+ + G + DAR+ F +M   ++VS N IIA    + D + A   
Sbjct: 345 HGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGF 404

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF-GDNVFVSCALIDMYS 277
           F+ +          T  ++    A        + +H   ++ G+  ++V +  A++DMY+
Sbjct: 405 FVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYA 464

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFS 336
           K G ++ A  VF+ +  K  + WNT+I GYA +G + EA+++Y  M +   +  +  T+ 
Sbjct: 465 KLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWV 524

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            I+     + +L+   + H  +++    LD+   + L+D Y K GR+ DA  +F ++  +
Sbjct: 525 SILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE 584

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           + ++WNA+I+ +G HG  E+ ++LF +ML  G++P+HVTF+++LSACS SG  E G   F
Sbjct: 585 SSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCF 644

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
           + M +++ IKP   HY CM++LLGR G L+ A+  I+  P +   ++W ALL ACR++GN
Sbjct: 645 RLM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGN 703

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
           +ELGKFA+++L+ ++ + +  YV+L NIY + GK +   +V    R +GL+  P  S IE
Sbjct: 704 IELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIE 763

Query: 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYH 635
           V ++  VF +G+QSH + KEIY ++  +  ++   GY+P+   +L DV+E E + +L+ H
Sbjct: 764 VNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSH 823

Query: 636 SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
           SE+LA+AFG+I+T   +P++I ++ R+C DCHNA K I+ +T REIVVRD++RFHHFKDG
Sbjct: 824 SERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDG 883

Query: 696 MCSCGDYW 703
           +CSCGDYW
Sbjct: 884 ICSCGDYW 891



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 208/404 (51%), Gaps = 23/404 (5%)

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA------FLL 218
           +++  R++ ++   G +  +R  FD++P++++ + N +I+  + +G + EA       LL
Sbjct: 151 IFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLL 210

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
             ++  +F      TF  +++A   L     G+++H  A K+GF  NVFV+ +LI MYS+
Sbjct: 211 VSEIRPDF-----YTFPPVLKACGTL---VDGRRIHCWAFKLGFQWNVFVAASLIHMYSR 262

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            G    A+ +FD+M  +    WN +I+G   +G + +ALD+  EMR  G+KM+  T   I
Sbjct: 263 FGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSI 322

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           + +C +L  +  A   H  +++HG   D+  ++AL++ Y+K+G +EDAR  F +M   +V
Sbjct: 323 LPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDV 382

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SWN++IA Y  +     A   F +M LNG +P+ +T +++ S  ++S   +    +   
Sbjct: 383 VSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGF 442

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           + R   +    +    ++++  + GLLD A  +      K   + W  L+T    NG   
Sbjct: 443 IMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVIS-WNTLITGYAQNG--- 498

Query: 519 LGKFAAEKLYGME--PEKLSN---YVVLLNIYNSSGKLKEAAEV 557
           L   A E    ME   E + N   +V +L  Y   G L++   +
Sbjct: 499 LASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRI 542



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 97/209 (46%), Gaps = 36/209 (17%)

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
           AK  HA LV  G    I  ++ LV+ Y+  G +  +R  FD++  K+V +WN++I+ Y +
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVH 194

Query: 411 HGRGEEAVELFEQMLL-NGMRPNHVTFLAVLSACSRSGLSER----------GWEIFQSM 459
           +G   EA+  F Q+LL + +RP+  TF  VL AC       R           W +F + 
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQWNVFVA- 253

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
                        A +I +  R G    A +L    PF+   + W A+++    NGN   
Sbjct: 254 -------------ASLIHMYSRFGFTGIARSLFDDMPFRDMGS-WNAMISGLIQNGN--- 296

Query: 520 GKFAAEKLYGMEPEKLS----NYVVLLNI 544
              AA+ L  ++  +L     N+V +++I
Sbjct: 297 ---AAQALDVLDEMRLEGIKMNFVTVVSI 322


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/636 (36%), Positives = 352/636 (55%), Gaps = 45/636 (7%)

Query: 101 IEKLVLNKRYREALELFEILEFEG-GFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           I  L  + R REAL++  +++  G G    S+TY + ++AC  L S+   K++   ++  
Sbjct: 263 ISALSKSGRVREALDM--VVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRN 320

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
               D Y+ + ++ ++ +CG   +A+R+F  + +RN VS  ++I G +  G + E+  LF
Sbjct: 321 LPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELF 380

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
             +  E         AT+I        I +G QLHS  LK G    V VS +LI MY+KC
Sbjct: 381 NQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKC 440

Query: 280 GSIEDAQGV-------------------------------FDEMSEKTTVGWNTIIAGYA 308
           G++++A+ +                               FD+MS +  + WN ++  Y 
Sbjct: 441 GNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYI 500

Query: 309 LHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
            HG  E+ L +Y +M  +  V  D  T+  + R C  + + +   Q     V+ G  LD 
Sbjct: 501 QHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDT 560

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              +A++  YSK GRI +AR  FD +  K+++SWNA+I GY  HG G++A+E+F+ +L  
Sbjct: 561 SVVNAVITMYSKCGRISEARKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNK 620

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G +P++++++AVLS CS SGL E G   F  M RDH I P   H++CM++LLGR G L E
Sbjct: 621 GAKPDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIE 680

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A  LI   P K T  +W ALL+AC+ +GN +L + AA+ L+ ++      Y++L  +Y  
Sbjct: 681 AKNLIDEMPMKPTAEVWGALLSACKTHGNNDLAELAAKHLFDLDSPGSGGYMLLAKMYAD 740

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
           +GK  ++A+V + +R KG++  P  SW+EV  + HVF + D SH Q   I  K+D +M +
Sbjct: 741 AGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNNRVHVFKAEDVSHPQVIAIREKLDELMEK 800

Query: 608 ISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
           I+  GYV  E            R   +HSEKLAVAFG+++   W P+ I+++ RIC DCH
Sbjct: 801 IAHLGYVRTE----------SPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICDDCH 850

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             IKLI+ VT RE V+RD  RFHHFK G CSC DYW
Sbjct: 851 TVIKLISTVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 148/314 (47%), Gaps = 32/314 (10%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           EP++   N ++  + + G + DA  LF  MP R++ S N I++G   SG +L A  +F+ 
Sbjct: 89  EPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVS 148

Query: 222 LWEEFSDC-GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           + +       + TF  ++++   L    V  QL     K    D+  V  AL+DM  +CG
Sbjct: 149 MRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCG 208

Query: 281 S-------------------------------IEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           +                               ++ A  +F  M E+  V WN +I+  + 
Sbjct: 209 AMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSK 268

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G   EALD+  +M   GV+ D  T++  +  C RL+SLE  KQ H  ++R+   +D   
Sbjct: 269 SGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYV 328

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            SA+V+ Y+K G  ++A+ VF  +  +N +SW  LI G+  +G   E+VELF QM    M
Sbjct: 329 ASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELM 388

Query: 430 RPNHVTFLAVLSAC 443
             +      ++S C
Sbjct: 389 AVDQFALATLISGC 402



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/257 (27%), Positives = 115/257 (44%), Gaps = 35/257 (13%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           NV     +++ Y+K GS+ DA  +F  M  +    WNTI++GY   G    ALD++  MR
Sbjct: 91  NVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMR 150

Query: 325 DSGVKM-DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF------- 376
            +G  + + FTF  +++ C  L   E A Q    L +     D    +ALVD        
Sbjct: 151 QTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAM 210

Query: 377 ------------------------YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
                                   Y+K   ++ A  +F  M  ++V+SWN +I+     G
Sbjct: 211 DFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSG 270

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD-HKIKPRAMH 471
           R  EA+++   M   G+RP+  T+ + L+AC+R    E G ++   + R+   I P    
Sbjct: 271 RVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVA- 329

Query: 472 YACMIELLGREGLLDEA 488
            + M+EL  + G   EA
Sbjct: 330 -SAMVELYAKCGCFKEA 345



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/243 (24%), Positives = 118/243 (48%), Gaps = 25/243 (10%)

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           +++ ++ +++ Y+K G + DA  +F +M  ++V SWN +++GY   G+   A+++F  M 
Sbjct: 91  NVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMR 150

Query: 426 LNGMR-PNHVTFLAVLSACSRSGLSERGWEIFQSMSR-DHKIKPRAMHYACMIELLGREG 483
             G   PN  TF  V+ +C   G  E   ++   +S+ D +  P       ++++L R G
Sbjct: 151 QTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQ--TALVDMLVRCG 208

Query: 484 LLDEA---FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540
            +D A   F+ I+        +M      +  V+  LE+ K        M    + ++ +
Sbjct: 209 AMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFK-------SMPERDVVSWNM 261

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLR--------MLPAC---SWIEVKKQPHVFLSGDQ 589
           +++  + SG+++EA +++  +  KG+R         L AC   S +E  KQ HV +  + 
Sbjct: 262 VISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNL 321

Query: 590 SHV 592
            H+
Sbjct: 322 PHI 324


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/576 (36%), Positives = 354/576 (61%), Gaps = 5/576 (0%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S  ++AL+ +   LR++++V    ++++ +G      +  +++ +    G +  ARRLF 
Sbjct: 91  SPVHEALLRSGPRLRNLQQVH---AHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFP 147

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
            +P  +    + ++      G  ++  L +  +    +   + TF ++I+A A L  + +
Sbjct: 148 TVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRL 207

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           GK++HS  +  G+G +++V  ALI +Y+K   ++ A+ VFD M ++T + WN++I+GY  
Sbjct: 208 GKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQ 267

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +G  +E++ L++ M +SG + D  T   ++  C++L +L+     H     +GF L++V 
Sbjct: 268 NGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVL 327

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            ++L++ Y++ G +  AR VFD M  +NV++W A+I+GYG HG G +A+ELF +M   G 
Sbjct: 328 GTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGP 387

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
           RPN++TF+AVLSAC+ SGL + G  +F SM   + + P   H  CM+++ GR GLL++A+
Sbjct: 388 RPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAY 447

Query: 490 ALIRG-APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
             I+   P +    +W ++L ACR++ N +LG   AE +  +EPE   +YV+L NIY  +
Sbjct: 448 QFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALA 507

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           G++     V   + R+ L+     S IE+ ++ ++F  GD+SH QT  IYR +D +M   
Sbjct: 508 GRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRC 567

Query: 609 SKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
           S+ GYVP  ++L+ D++E+E+   L YHSEKLA+AFGL+ T+    ++IV++ RIC DCH
Sbjct: 568 SESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCH 627

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +AIK I+++  REI+VRD  RFHHFKDG CSC DYW
Sbjct: 628 SAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 663



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 101/204 (49%), Gaps = 6/204 (2%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +E++ LF ++  E GF   S+T  +L+S+C  L ++     +  Y    GF+ ++ +   
Sbjct: 272 QESIGLFHLM-MESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTS 330

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ M+ RCG +  AR +FD M ERN+V+   +I+G    G   +A  LF ++        
Sbjct: 331 LINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPN 390

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFG--DNVFVSCALIDMYSKCGSIEDAQGV 288
           + TF  ++ A A   LI  G+++ S ++K  +G    V  +  ++DM+ + G + DA   
Sbjct: 391 NITFVAVLSACAHSGLIDDGRRVFS-SMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQF 449

Query: 289 FDEM--SEKTTVGWNTIIAGYALH 310
             +    E     W +++    +H
Sbjct: 450 IKKFIPKEPGPAVWTSMLGACRMH 473


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/541 (41%), Positives = 326/541 (60%), Gaps = 11/541 (2%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D Y RNR          M +A  LF E    +LV+ N ++AG   S D  +   LF  + 
Sbjct: 460 DAYSRNRC---------MKEAEILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMH 509

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
           ++       T AT+ +    L  I+ GKQ+H+ A+K G+  +++VS  ++DMY KCG + 
Sbjct: 510 KQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMS 569

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
            AQ  FD +     V W T+I+G   +G  E A  ++ +MR  GV  D FT + + +  +
Sbjct: 570 AAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASS 629

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            L +LE  +Q HA  ++     D    ++LVD Y+K G I+DA  +F ++   N+ +WNA
Sbjct: 630 CLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNA 689

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           ++ G   HG G+E ++LF+QM   G++P+ VTF+ VLSACS SGL    ++  +SM  D+
Sbjct: 690 MLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDY 749

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            IKP   HY+C+ + LGR GL+ +A  LI     + + +M+  LL ACRV G+ E GK  
Sbjct: 750 GIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRV 809

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
           A KL  +EP   S YV+L N+Y ++ K  E       ++   ++  P  SWIEVK + H+
Sbjct: 810 ATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHI 869

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVA 642
           F+  D+S+ QT+ IYRKV  M+ +I + GYVPE    L DV+E+E +R L YHSEKLAVA
Sbjct: 870 FVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVA 929

Query: 643 FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           FGL++T   TP++++++ R+C DCHNA+K IA V  REIV+RDA+RFH FKDG+CSCGDY
Sbjct: 930 FGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDY 989

Query: 703 W 703
           W
Sbjct: 990 W 990



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 184/366 (50%), Gaps = 23/366 (6%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           + L+LF ++  +G       T   +   C  L +I + K+V +Y + +G++ DL++ + +
Sbjct: 500 KTLKLFALMHKQGERS-DDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGI 558

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD------LWEE 225
           L M+V+CG M  A+  FD +P  + V+   +I+G I++G+   AF +F        L +E
Sbjct: 559 LDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDE 618

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
           F      T AT+ +AS+ L  +  G+Q+H+ ALK+   ++ FV  +L+DMY+KCGSI+DA
Sbjct: 619 F------TIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDA 672

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
             +F  +       WN ++ G A HG  +E L L+ +M+  G+K D  TF  ++  C+  
Sbjct: 673 YCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHS 732

Query: 346 A----SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS- 400
                + +H +  H     +G   +I   S L D   + G ++ A ++ + M  +   S 
Sbjct: 733 GLVSEAYKHMRSMHGD---YGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASM 789

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           +  L+A     G  E    +  ++L   + P   +   +LS    +       ++ ++M 
Sbjct: 790 YRTLLAACRVQGDTETGKRVATKLL--ELEPLDSSAYVLLSNMYAAASKWDEMKLARTMM 847

Query: 461 RDHKIK 466
           + HK+K
Sbjct: 848 KGHKVK 853



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 164/346 (47%), Gaps = 32/346 (9%)

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
           + SG Y      F D+ E   +C   TF  M+  +  ++ +++G+Q+H  ALK+G    +
Sbjct: 291 LHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLML 350

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
            VS +LI+MY K      A+ VFD MSE+  + WN++IAG A +G   EA+ L+ ++   
Sbjct: 351 TVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRC 410

Query: 327 GVKMDHFTFSMIIRICTRLA-SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
           G+K D +T + +++  + L   L  +KQ H   ++     D   ++AL+D YS+   +++
Sbjct: 411 GLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKE 470

Query: 386 A-----RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
           A     RH FD      +++WNA++AGY     G + ++LF  M   G R +  T   V 
Sbjct: 471 AEILFERHNFD------LVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVF 524

Query: 441 SACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL--IRGAPFK 498
             C              ++++  ++   A+     ++L    G+LD       +  A F 
Sbjct: 525 KTCG----------FLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFA 574

Query: 499 ------TTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLS 536
                      W  +++ C  NG  E     F+  +L G+ P++ +
Sbjct: 575 FDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFT 620



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 101/184 (54%), Gaps = 5/184 (2%)

Query: 163 PDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL-----EAFL 217
           P+ ++ N ++ M+ +CG +  ARR+FD+MP+R+LVS N I+A    S + +     +AFL
Sbjct: 72  PERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENIQQAFL 131

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           LF  L ++       T + M++       +   +  H  A K+G   + FV+ AL+++Y 
Sbjct: 132 LFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYL 191

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           K G +++ + +F+EM  +  V WN ++  Y   G+ EEA+DL      SG+  +  T  +
Sbjct: 192 KFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNEITLRL 251

Query: 338 IIRI 341
           + RI
Sbjct: 252 LARI 255



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 149/334 (44%), Gaps = 33/334 (9%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           ++A  LF IL  +  +     T   ++  C+    +   +    Y    G + D ++   
Sbjct: 127 QQAFLLFRILRQDVVY-TSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGA 185

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ ++++ G + + + LF+EMP R++V  N+++   ++ G   EA    +DL   F   G
Sbjct: 186 LVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEA----IDLSSAFHSSG 241

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
                  +R  A +                  GD+           S  G ++      D
Sbjct: 242 LNPNEITLRLLARIS-----------------GDD-----------SDAGQVKSFANGND 273

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
             S    +  N  ++ Y   G     L  + +M +S V+ D  TF +++    ++ SL  
Sbjct: 274 ASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLAL 333

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            +Q H   ++ G  L +  +++L++ Y K  +   AR VFD M  +++ISWN++IAG   
Sbjct: 334 GQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQ 393

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           +G   EAV LF Q+L  G++P+  T  +VL A S
Sbjct: 394 NGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAAS 427



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 5/193 (2%)

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           +GK  H+  L        F+   LI MYSKCGS+  A+ VFD+M ++  V WN+I+A YA
Sbjct: 57  LGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYA 116

Query: 309 LHGYS-----EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
                     ++A  L+  +R   V     T S ++++C     +  ++  H    + G 
Sbjct: 117 QSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGL 176

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             D     ALV+ Y K+G++++ + +F++M  ++V+ WN ++  Y   G  EEA++L   
Sbjct: 177 DGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSA 236

Query: 424 MLLNGMRPNHVTF 436
              +G+ PN +T 
Sbjct: 237 FHSSGLNPNEITL 249


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/632 (35%), Positives = 369/632 (58%), Gaps = 35/632 (5%)

Query: 106 LNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           LN     AL+L+ +     G    S ++  L+ +C   +++ E +++  ++L  G++ D+
Sbjct: 42  LNSDSVTALKLY-VCMISLGLLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDM 100

Query: 166 YMRNRVLLMHVRCGMMIDA-------------------------------RRLFDEMPER 194
           Y+   ++ M+ + G + DA                               R+LFDE+  +
Sbjct: 101 YVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVK 160

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           ++VS N +I+G +++ ++ EA  L+ D+ +        T  T++ A A    I +G+QLH
Sbjct: 161 DVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLH 220

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           S     GFG N+ +   LID+YSKCG +E A G+F  +++K  + WNT+I G+      +
Sbjct: 221 SWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYK 280

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN--SA 372
           EAL L+ EM  SG   +  T   ++  C  L +++  +  H  + +   G+   ++  ++
Sbjct: 281 EALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTS 340

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D Y+K G IE A+ VFD ML +++ SWNA+I G+  HG+   A +LF +M  NG+ P+
Sbjct: 341 LIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPD 400

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            +TF+ +LSACS SG+ + G  IF+SMS+D+KI P+  HY CMI+LLG  GL  EA  +I
Sbjct: 401 DITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMI 460

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
           R  P +    +W +LL AC+++ N+ELG+  A+ L  +EPE   +YV+L NIY ++G+  
Sbjct: 461 RTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWD 520

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
           + A++   L  KG++  P CS IE+    H F+ GD+ H + +EIYR ++ M + + + G
Sbjct: 521 QVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETG 580

Query: 613 YVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           +VP+   +L +++E+ ++  L +HSEKLA+AFGLI+T   T L IV++ R+C +CH A K
Sbjct: 581 FVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATK 640

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           LI+ +  REI+ RD +R H  KDG+ SC DYW
Sbjct: 641 LISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 129/255 (50%), Gaps = 33/255 (12%)

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A  +F+ + E   + WNT+  G+AL+  S  AL LY  M   G+  + ++F  +++ C +
Sbjct: 18  AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK 77

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA---------RHV------ 389
             +L   +Q H  +++ G+ LD+  N++L+  Y++ GR+EDA         RHV      
Sbjct: 78  SKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTAL 137

Query: 390 ----------------FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
                           FD++  K+V+SWNA+I+GY      +EA+EL++ M+   ++P+ 
Sbjct: 138 ITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPDE 197

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
            T + V+SAC++SG  E G ++  S   DH           +I+L  + G ++ A  L +
Sbjct: 198 STMVTVVSACAQSGSIELGRQL-HSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACGLFQ 256

Query: 494 GAPFKTTKNMWAALL 508
           G   K   + W  L+
Sbjct: 257 GLAKKDVIS-WNTLI 270


>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic; Flags: Precursor
 gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
 gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/577 (36%), Positives = 339/577 (58%), Gaps = 11/577 (1%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           SS Y  L+ + +  R++   +++ ++++  G   +  +   ++ M+V+CG ++ A+R+FD
Sbjct: 184 SSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFD 243

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
           +M  +  V+C  ++ G   +G   +A  LF+DL  E  +  S  F+ +++A A LE +++
Sbjct: 244 QMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKACASLEELNL 303

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           GKQ+H+C  K+G    V V   L+D Y KC S E A   F E+ E   V W+ II+GY  
Sbjct: 304 GKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQ 363

Query: 310 HGYSEEALDLYYEMRDSGVK-MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
               EEA+  +  +R      ++ FT++ I + C+ LA      Q HA  ++        
Sbjct: 364 MSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQY 423

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             SAL+  YSK G ++DA  VF+ M   ++++W A I+G+  +G   EA+ LFE+M+  G
Sbjct: 424 GESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCG 483

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           M+PN VTF+AVL+ACS +GL E+G     +M R + + P   HY CMI++  R GLLDEA
Sbjct: 484 MKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEA 543

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
              ++  PF+     W   L+ C  + NLELG+ A E+L  ++PE  + YV+  N+Y  +
Sbjct: 544 LKFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLYTWA 603

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           GK +EAAE+++ +  + L+   +CSWI+ K + H F+ GD+ H QT+EIY K+       
Sbjct: 604 GKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEIYEKLKEF---- 659

Query: 609 SKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINT--SDWTPLQIVQSHRICCDC 666
              G++ E      ++ E+ +++L  HSE+LA+AFGLI+   +   P+++ ++ R C DC
Sbjct: 660 --DGFM-EGDMFQCNMTERREQLLD-HSERLAIAFGLISVHGNAPAPIKVFKNLRACPDC 715

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           H   K +++VTG EIV+RD+ RFHHFK+G CSC DYW
Sbjct: 716 HEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 752



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 155/564 (27%), Positives = 252/564 (44%), Gaps = 67/564 (11%)

Query: 100 QIEKL--VLNKRYREALELFEILEF--EGGFDVGSSTYDALISACIGLRSIREVKRVFSY 155
           Q+E L  V   ++R+  E FE L+   + G  V S +Y  L  AC  LRS+    R+   
Sbjct: 49  QVENLHLVSLSKHRKLNEAFEFLQEMDKAGVSVSSYSYQCLFEACRELRSLSH-GRLLHD 107

Query: 156 MLSTGFE-PDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLE 214
            +  G E P + ++N VL M+  C  + DA +LFDEM E N VS   +I+   + G   +
Sbjct: 108 RMRMGIENPSVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYAEQGILDK 167

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
           A  LF  +        S  + T++++      +  G+Q+H+  ++ G   N  +   +++
Sbjct: 168 AVGLFSGMLASGDKPPSSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVN 227

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MY KCG +  A+ VFD+M+ K  V    ++ GY   G + +AL L+ ++   GV+ D F 
Sbjct: 228 MYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFV 287

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           FS++++ C  L  L   KQ HA + + G   ++   + LVDFY K    E A   F ++ 
Sbjct: 288 FSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIR 347

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLSAC---------- 443
             N +SW+A+I+GY    + EEAV+ F+ +   N    N  T+ ++  AC          
Sbjct: 348 EPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIFQACSVLADCNIGG 407

Query: 444 -------------------------SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478
                                    S+ G  +   E+F+SM       P  + +   I  
Sbjct: 408 QVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMD-----NPDIVAWTAFISG 462

Query: 479 LGREGLLDEAFALIR---GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL---YGMEP 532
               G   EA  L         K     + A+LTAC   G +E GK   + +   Y + P
Sbjct: 463 HAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAP 522

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH- 591
             + +Y  +++IY  SG L EA + ++ +  +      A SW         FLSG  +H 
Sbjct: 523 -TIDHYDCMIDIYARSGLLDEALKFMKNMPFEP----DAMSW-------KCFLSGCWTHK 570

Query: 592 -VQTKEIYRKVDRMMLEISKHGYV 614
            ++  EI  +  R +      GYV
Sbjct: 571 NLELGEIAGEELRQLDPEDTAGYV 594


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/610 (36%), Positives = 356/610 (58%), Gaps = 7/610 (1%)

Query: 99   SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
            S I  L  N+R+ EA+  F  ++  G      S    L S+C  L  +   +++      
Sbjct: 527  SMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTL-SSCSSLGWLTLGRQIHGEGFK 585

Query: 159  TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID-SGDYLEAFL 217
             G + D+ + N +L ++     + + +++F +MPE + VS N  I  +       L+A  
Sbjct: 586  WGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALK 645

Query: 218  LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
             FL++ +        TF  ++ A +   ++ +G Q+H+  LK    D+  +  AL+  Y 
Sbjct: 646  YFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYG 705

Query: 278  KCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
            KC  +ED + +F  MSE+   V WN++I+GY   G   +A+DL + M   G K+D FTF+
Sbjct: 706  KCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFA 765

Query: 337  MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
             ++  C  +A+LE   + HA  VR     D+V  SALVD Y+K G+I+ A   F+ M  +
Sbjct: 766  TVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVR 825

Query: 397  NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
            N+ SWN++I+GY  HG G++A+++F +M  +G  P+HVTF+ VLSACS  GL + G++ F
Sbjct: 826  NIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHF 885

Query: 457  QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA-CRVNG 515
            +SM   + + PR  H++CM++LLGR G + +    I+  P      +W  +L A CR NG
Sbjct: 886  KSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANG 945

Query: 516  -NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
             N ELG+ AA+ L  +EP+   NYV+L N++ + G  ++  E    +R+  ++    CSW
Sbjct: 946  RNTELGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSW 1005

Query: 575  IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD-VDEQEQRVLS 633
            + +K   H+F++GDQ+H + ++IY K+  +M +I   GYVPE K  L D   E ++ +LS
Sbjct: 1006 VNMKDGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYALYDLELENKEELLS 1065

Query: 634  YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
            YHSEKLA+AF L   S+  P++I+++ R+C DCH A K I+ + GR+I++RD++RFHHF 
Sbjct: 1066 YHSEKLAIAFVLTRKSE-LPIRIMKNLRVCGDCHTAFKYISKIVGRQIILRDSNRFHHFG 1124

Query: 694  DGMCSCGDYW 703
             GMCSCGDYW
Sbjct: 1125 GGMCSCGDYW 1134



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 205/407 (50%), Gaps = 17/407 (4%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           S+ +   +   +  TGF  D++  N ++ ++VR G ++ AR+LFDEMP++NLVS + +I+
Sbjct: 155 SLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLIS 214

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA--SAGLELISVGKQLHSCALKMGF 262
           G   +    EA  LF  +             + +RA    G   I +G Q+H+   K+  
Sbjct: 215 GYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPC 274

Query: 263 GDNVFVSCALIDMYSKC-GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
             ++ +S  L+ MYS C GSI+DA  VFDE+  + +V WN+II+ Y   G +  A  L+ 
Sbjct: 275 VSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFS 334

Query: 322 EMRDSGVKM----DHFTFSMIIRICTRLA--SLEHAKQAHAGLVRHGFGLDIVANSALVD 375
            M+  GV++    + +T   ++     LA   L   +Q    + + GF  D+   SALV+
Sbjct: 335 VMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYVGSALVN 394

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            ++++G ++ A+ +F +M  +N ++ N L+ G     +GEEA ++F++M  + +  N  +
Sbjct: 395 GFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM-KDLVEINSES 453

Query: 436 FLAVLSACSR-SGLSE---RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
            + +LS  +  S L E   +G E+   + R   +  R      ++ + G+   +D A ++
Sbjct: 454 LVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSV 513

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLS 536
            +  P K T + W ++++    N   E  +  F   K  GM P   S
Sbjct: 514 FQLMPSKDTVS-WNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFS 559



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 174/342 (50%), Gaps = 10/342 (2%)

Query: 113 ALELFEILEFEG---GFDVGSSTYDALISACIGLRSIREV--KRVFSYMLSTGFEPDLYM 167
           A +LF +++ EG          T  +L++A   L     V  +++ + +  +GF  DLY+
Sbjct: 329 AFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRDLYV 388

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL---DLWE 224
            + ++    R G+M  A+ +F +M +RN V+ N ++ G+       EA  +F    DL E
Sbjct: 389 GSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVE 448

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD-NVFVSCALIDMYSKCGSIE 283
             S+      +T    S   E    G+++H+   + G  D  + +  AL++MY KC +I+
Sbjct: 449 INSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAID 508

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
           +A  VF  M  K TV WN++I+G   +   EEA+  ++ M+ +G+   +F+    +  C+
Sbjct: 509 NACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCS 568

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            L  L   +Q H    + G  LD+  ++AL+  Y++   I + + VF +M   + +SWN+
Sbjct: 569 SLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNS 628

Query: 404 LIAGYGNHGRGE-EAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            I     +     +A++ F +M+  G RPN VTF+ +L+A S
Sbjct: 629 FIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVS 670



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 159/334 (47%), Gaps = 23/334 (6%)

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
              LH    K GF D+VF    LI++Y + G++  A+ +FDEM +K  V W+ +I+GY  
Sbjct: 159 ANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQ 218

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS--LEHAKQAHAGLVRHGFGLDI 367
           +   +EA  L+  +  SG+  +HF     +R C +  S  ++   Q HA + +     D+
Sbjct: 219 NRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDM 278

Query: 368 VANSALVDFYSKW-GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           + ++ L+  YS   G I+DA  VFD++  +N ++WN++I+ Y   G    A +LF  M +
Sbjct: 279 ILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQM 338

Query: 427 NG----MRPNHVTFLA-VLSACSRSGLSERGWEIFQSM-SRDHKIKPRAMHY--ACMIEL 478
            G    +RPN  T  + V +ACS   L++ G  + + M +R  K       Y  + ++  
Sbjct: 339 EGVELNLRPNEYTLCSLVTAACS---LADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNG 395

Query: 479 LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE--KLYGMEPEKLS 536
             R GL+D A  + +    +    M   ++   R +   E  K   E   L  +  E L 
Sbjct: 396 FARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESL- 454

Query: 537 NYVVLLNIYNSSGKLKE----AAEVIRTLRRKGL 566
             VVLL+ +     LKE      EV   L R GL
Sbjct: 455 --VVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGL 486



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 101/216 (46%), Gaps = 3/216 (1%)

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           +SL  A   H  L + GF  D+   + L++ Y + G +  AR +FD+M  KN++SW+ LI
Sbjct: 154 SSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLI 213

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS--ERGWEIFQSMSRDH 463
           +GY  +   +EA  LF+ ++ +G+ PNH    + L AC + G +  + G +I   + +  
Sbjct: 214 SGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLP 273

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK-F 522
            +    +    M       G +D+A  +     F+ +    + +   CR    +   K F
Sbjct: 274 CVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLF 333

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVI 558
           +  ++ G+E     N   L ++  ++  L +   V+
Sbjct: 334 SVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVL 369


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/576 (36%), Positives = 355/576 (61%), Gaps = 5/576 (0%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S  ++AL+ +  G R +R +++V ++++ +G      +  +++ +    G +  ARRLF 
Sbjct: 27  SPVHEALLRS--GPR-LRNLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFP 83

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
            +P  +    + ++      G  ++  L +  +    +   + TF ++I+A A L  + +
Sbjct: 84  TVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRL 143

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           GK++HS  +  G+G +++V  ALI +Y+K   ++ A+ VFD M ++T + WN++I+GY  
Sbjct: 144 GKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQ 203

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +G  +E++ L++ M +SG + D  T   ++  C++L +L+     H     +GF L++V 
Sbjct: 204 NGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVL 263

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            ++L++ Y++ G +  AR VFD M  +NV++W A+I+GYG HG G +A+ELF +M   G 
Sbjct: 264 GTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGP 323

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
           RPN++TF+AVLSAC+ SGL + G  +F SM   + + P   H  CM+++ GR GLL++A+
Sbjct: 324 RPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAY 383

Query: 490 ALIRG-APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
             I+   P +    +W ++L ACR++ N +LG   AE +  +EPE   +YV+L NIY  +
Sbjct: 384 QFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVMLSNIYALA 443

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           G++     V   + R+ L+     S IE+ ++ ++F  GD+SH QT  IYR +D +M   
Sbjct: 444 GRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRYLDELMCRC 503

Query: 609 SKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
           S+ GYVP  ++L+ D++E+E+   L YHSEKLA+AFGL+ T+    ++IV++ RIC DCH
Sbjct: 504 SESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKNLRICEDCH 563

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +AIK I+++  REI+VRD  RFHHFKDG CSC DYW
Sbjct: 564 SAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 599



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 101/204 (49%), Gaps = 6/204 (2%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +E++ LF ++  E GF   S+T  +L+S+C  L ++     +  Y    GF+ ++ +   
Sbjct: 208 QESIGLFHLM-MESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTS 266

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ M+ RCG +  AR +FD M ERN+V+   +I+G    G   +A  LF ++        
Sbjct: 267 LINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPN 326

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFG--DNVFVSCALIDMYSKCGSIEDAQGV 288
           + TF  ++ A A   LI  G+++ S ++K  +G    V  +  ++DM+ + G + DA   
Sbjct: 327 NITFVAVLSACAHSGLIDDGRRVFS-SMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQF 385

Query: 289 FDEM--SEKTTVGWNTIIAGYALH 310
             +    E     W +++    +H
Sbjct: 386 IKKFIPKEPGPAVWTSMLGACRMH 409


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/577 (36%), Positives = 349/577 (60%), Gaps = 3/577 (0%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S T  +L+SAC           + SY +  G E +L++ N+++ ++   G + D +++FD
Sbjct: 247 SVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFD 306

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
            M  R+L+S N II     +   L A  LF ++          T  ++    + L  I  
Sbjct: 307 RMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRA 366

Query: 250 GKQLHSCALKMG-FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
            + +    L+ G F +++ +  A++ MY+K G ++ A+ VF+ +     + WNTII+GYA
Sbjct: 367 CRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYA 426

Query: 309 LHGYSEEALDLYYEMRDSG-VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
            +G++ EA+++Y  M + G +  +  T+  ++  C++  +L    + H  L+++G  LD+
Sbjct: 427 QNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDV 486

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              ++L D Y K GR+EDA  +F ++   N + WN LIA +G HG GE+AV LF++ML  
Sbjct: 487 FVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDE 546

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G++P+H+TF+ +LSACS SGL + G   F+ M  D+ I P   HY CM+++ GR G L+ 
Sbjct: 547 GVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLET 606

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A   I+    +   ++W ALL+ACRV+GN++LGK A+E L+ +EPE +  +V+L N+Y S
Sbjct: 607 ALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYAS 666

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
           +GK +   E+      KGLR  P  S +EV  +  VF +G+Q+H   +E+YR++  +  +
Sbjct: 667 AGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAK 726

Query: 608 ISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
           +   GYVP+ + +L DV D++++ +L  HSE+LA+AF LI T   T ++I ++ R+C DC
Sbjct: 727 LKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDC 786

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           H+  K I+ +T REI+VRD++RFHHFK+G+CSCGDYW
Sbjct: 787 HSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 133/489 (27%), Positives = 241/489 (49%), Gaps = 48/489 (9%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E +  F +     G      T+ +++ AC   R++ +  ++    L  GF  D+Y+   +
Sbjct: 135 EVIRCFSLFMLSSGLTPDYRTFPSVLKAC---RTVIDGNKIHCLALKFGFMWDVYVAASL 191

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + ++ R   + +AR LFDEMP R++ S N +I+G   SG+  EA    L L        S
Sbjct: 192 IHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEA----LTLSNGLRAMDS 247

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T  +++ A       + G  +HS ++K G    +FVS  LID+Y++ G + D Q VFD 
Sbjct: 248 VTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDR 307

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M  +  + WN+II  Y L+     A+ L+ EMR S ++ D  T   +  I ++L  +   
Sbjct: 308 MYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRAC 367

Query: 352 KQAHAGLVRHGFGL-DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
           +      +R G+ L DI   +A+V  Y+K G ++ AR VF+ +   +VISWN +I+GY  
Sbjct: 368 RSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQ 427

Query: 411 HGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
           +G   EA+E++  M   G +  N  T+++VL ACS++G   +G ++   + ++  +    
Sbjct: 428 NGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDV 486

Query: 470 MHYACMIELLGREGLLDEAFAL------IRGAPFKTT-----------------KNM--- 503
                + ++ G+ G L++A +L      +   P+ T                  K M   
Sbjct: 487 FVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDE 546

Query: 504 --------WAALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLK 552
                   +  LL+AC  +G ++ G++  E +   YG+ P  L +Y  ++++Y  +G+L+
Sbjct: 547 GVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPS-LKHYGCMVDMYGRAGQLE 605

Query: 553 EAAEVIRTL 561
            A + I+++
Sbjct: 606 TALKFIKSM 614



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 207/404 (51%), Gaps = 43/404 (10%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA------FLLFLDLWEEFSDCGSRTFATM 237
           AR  FD +  R++ + N++I+G   +G+  E       F+L   L  ++     RTF ++
Sbjct: 105 ARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDY-----RTFPSV 159

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           ++A      +  G ++H  ALK GF  +V+V+ +LI +YS+  ++ +A+ +FDEM  +  
Sbjct: 160 LKAC---RTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDM 216

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
             WN +I+GY   G ++EAL L   +R     MD  T   ++  CT           H+ 
Sbjct: 217 GSWNAMISGYCQSGNAKEALTLSNGLR----AMDSVTVVSLLSACTEAGDFNRGVTIHSY 272

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
            ++HG   ++  ++ L+D Y+++GR+ D + VFD+M  +++ISWN++I  Y  + +   A
Sbjct: 273 SIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRA 332

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSG-----LSERGWEIFQSMSRDHKIKPRAMHY 472
           + LF++M L+ ++P+ +T +++ S  S+ G      S +G+ + +    +      A   
Sbjct: 333 ISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNA--- 389

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE--KLYGM 530
             ++ +  + GL+D A A+    P  T    W  +++    NG      FA+E  ++Y +
Sbjct: 390 --VVVMYAKLGLVDSARAVFNWLP-NTDVISWNTIISGYAQNG------FASEAIEMYNI 440

Query: 531 ---EPEKLSN---YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
              E E  +N   +V +L   + +G L++  ++   L + GL +
Sbjct: 441 MEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYL 484



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 150/305 (49%), Gaps = 15/305 (4%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY-YEM 323
           NV +S  L+++Y   G++  A+  FD +  +    WN +I+GY   G S E +  +   M
Sbjct: 85  NVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFM 144

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
             SG+  D+ TF  +++ C  +       + H   ++ GF  D+   ++L+  YS++  +
Sbjct: 145 LSSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAV 201

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSA 442
            +AR +FD+M  +++ SWNA+I+GY   G  +EA+ L      NG+R  + VT +++LSA
Sbjct: 202 GNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLS-----NGLRAMDSVTVVSLLSA 256

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
           C+ +G   RG  I  S S  H ++        +I+L    G L +   +      +   +
Sbjct: 257 CTEAGDFNRGVTI-HSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLIS 315

Query: 503 MWAALLTACRVNGN--LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560
            W +++ A  +N      +  F   +L  ++P+ L+  + L +I +  G ++    V   
Sbjct: 316 -WNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLT-LISLASILSQLGDIRACRSVQGF 373

Query: 561 LRRKG 565
             RKG
Sbjct: 374 TLRKG 378



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 95/202 (47%), Gaps = 2/202 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA+E++ I+E EG       T+ +++ AC    ++R+  ++   +L  G   D+++   +
Sbjct: 433 EAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSL 492

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
             M+ +CG + DA  LF ++P  N V  N +IA     G   +A +LF ++ +E      
Sbjct: 493 ADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDH 552

Query: 232 RTFATMIRASAGLELISVGKQ-LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
            TF T++ A +   L+  G+          G   ++     ++DMY + G +E A     
Sbjct: 553 ITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIK 612

Query: 291 EMSEKTTVG-WNTIIAGYALHG 311
            MS +     W  +++   +HG
Sbjct: 613 SMSLQPDASIWGALLSACRVHG 634



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 59/107 (55%), Gaps = 4/107 (3%)

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           + R CT L S   AK  HA LV      ++  ++ LV+ Y   G +  ARH FD +  ++
Sbjct: 60  LFRYCTNLQS---AKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRD 116

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQ-MLLNGMRPNHVTFLAVLSAC 443
           V +WN +I+GYG  G   E +  F   ML +G+ P++ TF +VL AC
Sbjct: 117 VYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKAC 163


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/584 (37%), Positives = 342/584 (58%), Gaps = 34/584 (5%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           ++  ++   I +R I E + +F  M       D+  R  ++  + + G + +AR LFDEM
Sbjct: 142 SWTVMLGGLIQVRRIDEARGLFDIMPVK----DVVARTNMISGYCQEGRLAEARELFDEM 197

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMI----------RAS 241
           P RN++S   +I+G + +G    A  LF    E   +    ++  M+           AS
Sbjct: 198 PRRNVISWTTMISGYVQNGQVDVARKLF----EVMPEKNEVSWTAMLMGYTQGGRIEEAS 253

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
              + + V   +   A+ +GFG N              G +  A+ VFD++ EK    W+
Sbjct: 254 ELFDAMPVKAVVACNAMILGFGQN--------------GEVAKARQVFDQIREKDDGTWS 299

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
            +I  Y   G+  EAL+L+  M+  GV+ +  +   ++ +C  LASL+H +Q HA LV+ 
Sbjct: 300 AMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKS 359

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
            F  D+   S L+  Y K G +  AR +FD+   K+++ WN++I GY  HG  EEA+++F
Sbjct: 360 QFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVF 419

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
            +M  +GM  + VTF+ VLSACS +G  + G EIF+SM   + ++P+  HYACM++LLGR
Sbjct: 420 HEMCSSGMATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGR 479

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
            GL+++A  LI+  P +    +W ALL ACR + N+ L + AA+KL  +EP+    Y++L
Sbjct: 480 AGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILL 539

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG-DQSHVQTKEIYRK 600
            NIY S G+  + AE+ R +R K +   P CSWIEV+K+ H+F  G    H +   I + 
Sbjct: 540 SNIYASKGRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKM 599

Query: 601 VDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQS 659
           ++++   + + GY P+   +L DVDE+E+ R L +HSE+LAVAFGL+   +  P++++++
Sbjct: 600 LEKLDGMLREAGYYPDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKN 659

Query: 660 HRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            R+C DCH+AIKLIA +TGREI++RDA+RFHHFKDG CSC DYW
Sbjct: 660 LRVCGDCHSAIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/430 (23%), Positives = 182/430 (42%), Gaps = 81/430 (18%)

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N  +  + R G +  ARR+FDEMP++ +VS N ++AG   +    EA  LF  + E    
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPER--- 76

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
                                               N      LI  Y K   + +A+  
Sbjct: 77  ------------------------------------NTVSWNGLISGYVKNRMVSEARKA 100

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD M E+  V W  ++ GY   G   EA  L+++M +  V     ++++++    ++  +
Sbjct: 101 FDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNV----VSWTVMLGGLIQVRRI 156

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
           + A+    GL       D+VA + ++  Y + GR+ +AR +FD+M  +NVISW  +I+GY
Sbjct: 157 DEAR----GLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGY 212

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
             +G+ + A +LFE M       N V++ A+L   ++ G  E   E+F +M     +   
Sbjct: 213 VQNGQVDVARKLFEVMP----EKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAVVACN 268

Query: 469 AM--------------------------HYACMIELLGREGLLDEA---FALIRGAPFKT 499
           AM                           ++ MI++  R+G   EA   FAL++    ++
Sbjct: 269 AMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFALMQREGVQS 328

Query: 500 TKNMWAALLTACRVNGNLELGK-FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVI 558
                 ++L+ C    +L+ G+   AE +       +    VL+ +Y   G L +A ++ 
Sbjct: 329 NFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIF 388

Query: 559 RTLRRKGLRM 568
                K + M
Sbjct: 389 DRFSPKDIVM 398



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 100/201 (49%), Gaps = 17/201 (8%)

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
           +A ++ +  Y++ G+IE AR VFD+M  K ++SWN+++AGY  + R  EA  LF++M   
Sbjct: 17  IAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMP-- 74

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
               N V++  ++S   ++ +     + F +M   + +      +  M+    +EGL+ E
Sbjct: 75  --ERNTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVS-----WTAMVRGYVQEGLVSE 127

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF-AAEKLYGMEPEK-LSNYVVLLNIY 545
           A  L    P K   + W  +L      G +++ +   A  L+ + P K +     +++ Y
Sbjct: 128 AETLFWQMPEKNVVS-WTVML-----GGLIQVRRIDEARGLFDIMPVKDVVARTNMISGY 181

Query: 546 NSSGKLKEAAEVIRTLRRKGL 566
              G+L EA E+   + R+ +
Sbjct: 182 CQEGRLAEARELFDEMPRRNV 202


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/581 (37%), Positives = 357/581 (61%), Gaps = 4/581 (0%)

Query: 126 FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
           F V  S   +L+ A     S+     + + ++ +    D ++ +R++ M+ + G   DA+
Sbjct: 115 FIVVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQ 174

Query: 186 RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL-LFLDLWEEFS-DCGSRTFATMIRASAG 243
           RLFDEMP ++LVS N +++G+   G YL A L  F  +  E        T  +++ A A 
Sbjct: 175 RLFDEMPNKDLVSWNSLMSGLSGRG-YLGACLNAFCRMRTESGRQPNEVTLLSVVSACAD 233

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           +  +  GK LH   +K+G      V  +LI+MY K G ++ A  +F+EM  ++ V WN++
Sbjct: 234 MGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSM 293

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           +  +  +GY+E+ +DL+  M+ +G+  D  T   ++R CT       A+  HA + R GF
Sbjct: 294 VVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGF 353

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             DI+  +AL++ Y+K GR+  +  +F+++  ++ I+W A++AGY  H  G EA++LF+ 
Sbjct: 354 NADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDL 413

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           M+  G+  +HVTF  +LSACS SGL E G + F+ MS  ++++PR  HY+CM++LLGR G
Sbjct: 414 MVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSG 473

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
            L++A+ LI+  P + +  +W ALL ACRV GN+ELGK  AE+L  ++P    NY++L N
Sbjct: 474 RLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSN 533

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           IY+++G  ++A++V   ++ + L   P CS+IE   + H F+ GDQ H ++ EI+ K++ 
Sbjct: 534 IYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEE 593

Query: 604 MMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           ++ +I + G  P+ + +L D+DE+ +  +++ HSEKLA+AFGL+ T    PL I ++ RI
Sbjct: 594 LIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRI 653

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH+  K  +++  R I++RD+ RFHHF DG+CSC DYW
Sbjct: 654 CGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 167/340 (49%), Gaps = 9/340 (2%)

Query: 114 LELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLL 173
           L  F  +  E G      T  +++SAC  + ++ E K +   ++  G      + N ++ 
Sbjct: 205 LNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLIN 264

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+ + G +  A +LF+EMP R+LVS N ++     +G   +   LF  +     +    T
Sbjct: 265 MYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQAT 324

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
              ++RA     L    + +H+   + GF  ++ ++ AL+++Y+K G +  ++ +F+E+ 
Sbjct: 325 MVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIK 384

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK- 352
           ++  + W  ++AGYA+H    EA+ L+  M   GV++DH TF+ ++  C+    +E  K 
Sbjct: 385 DRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKK 444

Query: 353 --QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYG 409
             +  + + R    LD    S +VD   + GR+EDA  +   M +  +   W AL+    
Sbjct: 445 YFEIMSEVYRVEPRLD--HYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACR 502

Query: 410 NHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGL 448
            +G  E   E+ EQ+L   + P +H  ++ + +  S +GL
Sbjct: 503 VYGNVELGKEVAEQLL--SLDPSDHRNYIMLSNIYSAAGL 540



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 98/211 (46%), Gaps = 5/211 (2%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N    + ++LF +++   G +   +T  AL+ AC      R+ + + +Y+   GF  D+ 
Sbjct: 300 NGYAEKGMDLFNLMK-RAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADII 358

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   +L ++ + G +  +  +F+E+ +R+ ++   ++AG        EA  LF  + +E 
Sbjct: 359 IATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEG 418

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF--VSCALIDMYSKCGSIED 284
            +    TF  ++ A +   L+  GK+      ++   +      SC ++D+  + G +ED
Sbjct: 419 VEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSC-MVDLLGRSGRLED 477

Query: 285 AQGVFDEMSEKTTVG-WNTIIAGYALHGYSE 314
           A  +   M  + + G W  ++    ++G  E
Sbjct: 478 AYELIKSMPMEPSSGVWGALLGACRVYGNVE 508


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/640 (37%), Positives = 368/640 (57%), Gaps = 50/640 (7%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           A+++FE +  + G    + +   ++ AC  + +    K+V  Y L +G   D+++ N V+
Sbjct: 233 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVV 292

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF------------- 219
            M+ +CGMM +A ++F+ M  +++VS N ++ G    G + +A  LF             
Sbjct: 293 DMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVV 352

Query: 220 ------------------LDLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCA 257
                             LD++ +   CGS     T  +++   A    +  GK+ H  A
Sbjct: 353 TWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHA 412

Query: 258 LKMGF-------GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK--TTVGWNTIIAGYA 308
           +K          GD++ V  ALIDMYSKC S + A+ +FD +  K  + V W  +I G A
Sbjct: 413 IKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNA 472

Query: 309 LHGYSEEALDLYYEM--RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF--G 364
            HG + EAL+L+ +M   D+ V  + FT S  +  C RL +L   +Q HA ++R+ F   
Sbjct: 473 QHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESA 532

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
           +  VAN  L+D YSK G ++ AR VFD M  +N +SW +L+ GYG HGRGEEA+++F +M
Sbjct: 533 MLFVAN-CLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEM 591

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
               + P+ VTF+ VL ACS SG+ ++G   F  M++D  + P A HYACM++LL R G 
Sbjct: 592 QKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGR 651

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           LDEA  LIRG P K T  +W ALL+ACRV  N+ELG++AA +L  +E     +Y +L NI
Sbjct: 652 LDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNI 711

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           Y ++   K+ A +   ++  G++  P CSW++ +K    F +GD SH  +++IY  +  +
Sbjct: 712 YANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDL 771

Query: 605 MLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
           M  I   GYVP+ +  L DVD++E+  +LS HSEKLA+A+G++ T+   P++I ++ R C
Sbjct: 772 MQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRAC 831

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCH+A   I+++   EI+VRD+SRFHHFK+G CSC  YW
Sbjct: 832 GDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 139/481 (28%), Positives = 236/481 (49%), Gaps = 66/481 (13%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  ++ AC  + S R    V + + ++GFE ++++ N ++ M+ RCG   +AR++FDEM
Sbjct: 147 TFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEM 206

Query: 192 PER---NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGL 244
            ER   +LVS N I+A  +  GD + A  +F  + E   D G R    +   ++ A A +
Sbjct: 207 RERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTE---DLGIRPDAVSLVNVLPACASV 263

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
              S GKQ+H  AL+ G  ++VFV  A++DMY+KCG +E+A  VF+ M  K  V WN ++
Sbjct: 264 GAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMV 323

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII------------------------- 339
            GY+  G  ++AL L+ ++R+  ++++  T+S +I                         
Sbjct: 324 TGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSE 383

Query: 340 ----------RICTRLASLEHAKQAHAGLVR-------HGFGLDIVANSALVDFYSKWGR 382
                       C    +L H K+ H   ++       +  G D++  +AL+D YSK   
Sbjct: 384 PNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKS 443

Query: 383 IEDARHVFDKMLCKN--VISWNALIAGYGNHGRGEEAVELFEQMLL--NGMRPNHVTFLA 438
            + AR +FD +  K+  V++W  LI G   HG   EA+ELF QML   N + PN  T   
Sbjct: 444 PKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISC 503

Query: 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK 498
            L AC+R G    G +I   + R+           C+I++  + G +D A  +      +
Sbjct: 504 ALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQR 563

Query: 499 TTKNMWAALLTACRVNGNLELGKFAAEKLYGME-----PEKLSNYVVLLNIYNSSGKLKE 553
              + W +L+T   ++G    G+ A +  Y M+     P+ ++ +VV+L   + SG + +
Sbjct: 564 NGVS-WTSLMTGYGMHGR---GEEALQIFYEMQKVXLVPDGVT-FVVVLYACSHSGMVDQ 618

Query: 554 A 554
            
Sbjct: 619 G 619



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 126/257 (49%), Gaps = 13/257 (5%)

Query: 272 LIDMYSKCGSIEDAQGVFDEM--SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
           +I MY    S   A  V   +  S  T   WN +I      G+ E+ L LY  M+  G +
Sbjct: 83  IISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWR 142

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            DH+TF  +++ C  + S       HA +   GF  ++   + LV  Y + G  E+AR V
Sbjct: 143 PDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQV 202

Query: 390 FDKMLCKNV---ISWNALIAGYGNHGRGEEAVELFEQMLLN-GMRPNHVTFLAVLSACSR 445
           FD+M  + V   +SWN+++A Y   G    A+++FE+M  + G+RP+ V+ + VL AC+ 
Sbjct: 203 FDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACAS 262

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
            G   RG ++     R    +   +  A ++++  + G+++EA  +      K   + W 
Sbjct: 263 VGAWSRGKQVHGYALRSGLFEDVFVGNA-VVDMYAKCGMMEEANKVFERMKVKDVVS-WN 320

Query: 506 ALLTACRVNGNLELGKF 522
           A++T     G  ++G+F
Sbjct: 321 AMVT-----GYSQIGRF 332



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 89/189 (47%), Gaps = 3/189 (1%)

Query: 112 EALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD-LYMRN 169
           EALELF ++L+ +      + T    + AC  L ++R  +++ +Y+L   FE   L++ N
Sbjct: 479 EALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVAN 538

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+ + G +  AR +FD M +RN VS   ++ G    G   EA  +F ++ +     
Sbjct: 539 CLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVP 598

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
              TF  ++ A +   ++  G    +   K  G          ++D+ S+ G +++A  +
Sbjct: 599 DGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMEL 658

Query: 289 FDEMSEKTT 297
              M  K T
Sbjct: 659 IRGMPMKPT 667


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/617 (36%), Positives = 361/617 (58%), Gaps = 3/617 (0%)

Query: 89  QMKKPSAGIC-SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
           Q K+P+  +  + I  LVLN  ++E++E++  +  EG     S T+  ++ AC  +    
Sbjct: 67  QTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEG-LSPDSFTFPFVLKACARVLDSE 125

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
              ++ S ++  G E D +++  ++ ++ +CG + +A ++FD++P++N  S    I+G +
Sbjct: 126 LGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYV 185

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
             G   EA  +F  L E      S +   ++ A      +  G+ +     + G   NVF
Sbjct: 186 GVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVF 245

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
           V+ AL+D Y KCG++E A+ VFD M EK  V W+++I GYA +G  +EALDL+++M + G
Sbjct: 246 VATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEG 305

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           +K D +    ++  C RL +LE    A   +  + F  + V  +AL+D Y+K GR++ A 
Sbjct: 306 LKPDCYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAW 365

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
            VF  M  K+ + WNA I+G    G  ++A+ LF QM  +G++P+  TF+ +L AC+ +G
Sbjct: 366 EVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAG 425

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
           L E G   F SM     + P   HY CM++LLGR G LDEA  LI+  P +    +W AL
Sbjct: 426 LVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGAL 485

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           L  CR++ + +L +   +KL  +EP    NYV+L NIY +S K +EAA++   +  +G++
Sbjct: 486 LGGCRLHRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVK 545

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ 627
            +P  SWIEV    H FL GD SH  +++IY K+  +  ++   GYVP    +L D++E+
Sbjct: 546 KIPGYSWIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEE 605

Query: 628 E-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
           E +  +  HSEKLAVAFGLI+T+    + +V++ R+C DCH AIK I+ + GREI+VRD 
Sbjct: 606 EKEHFIGCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDN 665

Query: 687 SRFHHFKDGMCSCGDYW 703
           +RFH F DG+CSC DYW
Sbjct: 666 NRFHCFTDGLCSCKDYW 682



 Score =  199 bits (506), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 118/416 (28%), Positives = 226/416 (54%), Gaps = 7/416 (1%)

Query: 142 GLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNM 201
           G   ++ +K + + +L  G + D Y+ N+VL      G    + R+ D+  E N+   N 
Sbjct: 19  GFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNT 78

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           +I G++ +  + E+  ++  + +E     S TF  +++A A +    +G ++HS  +K G
Sbjct: 79  MIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAG 138

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
              + FV  +LI++Y+KCG I++A  VFD++ +K    W   I+GY   G   EA+D++ 
Sbjct: 139 CEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFR 198

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
            + + G++ D F+   ++  C R   L   +     +  +G   ++   +ALVDFY K G
Sbjct: 199 RLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCG 258

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            +E AR VFD ML KN++SW+++I GY ++G  +EA++LF +ML  G++P+    + VL 
Sbjct: 259 NMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLC 318

Query: 442 ACSRSGLSERG-WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTT 500
           +C+R G  E G W    ++   ++    ++    +I++  + G +D A+ + RG   K  
Sbjct: 319 SCARLGALELGDWA--SNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMR-KKD 375

Query: 501 KNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
           + +W A ++   ++G+++  LG F   +  G++P++ + +V LL     +G ++E 
Sbjct: 376 RVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDR-NTFVGLLCACTHAGLVEEG 430



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 171/350 (48%), Gaps = 38/350 (10%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           K +H+  L++G  ++ ++   ++      G+   +  + D+  E     +NT+I G  L+
Sbjct: 27  KHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLN 86

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
              +E++++Y+ MR  G+  D FTF  +++ C R+   E   + H+ +V+ G   D    
Sbjct: 87  DCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVK 146

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
            +L++ Y+K G I++A  VFD +  KN  SW A I+GY   G+  EA+++F ++L  G+R
Sbjct: 147 ISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLR 206

Query: 431 PNHVTFLAVLSACSRSG-----------LSERGW--EIF------------QSMSR---- 461
           P+  + + VLSAC R+G           ++E G    +F             +M R    
Sbjct: 207 PDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERARSV 266

Query: 462 -DHKIKPRAMHYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWAALLTACRVNGNL 517
            D  ++   + ++ MI+     GL  EA  L   +     K        +L +C   G L
Sbjct: 267 FDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGAL 326

Query: 518 ELGKFAAEKLYGMEPEKLSNYVV---LLNIYNSSGKLKEAAEVIRTLRRK 564
           ELG +A+  + G   E L N V+   L+++Y   G++  A EV R +R+K
Sbjct: 327 ELGDWASNLING--NEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKK 374


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/576 (38%), Positives = 337/576 (58%), Gaps = 36/576 (6%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D+   N ++ +H++ G M  A   F++M ER++V+ N +I+G    G  L A  +F  + 
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKML 270

Query: 224 EEFSDCGSR-TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
            +      R T A+++ A A LE + +GKQ+HS  +  GF  +  V  ALI MYS+CG +
Sbjct: 271 RDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGV 330

Query: 283 E---------------------------------DAQGVFDEMSEKTTVGWNTIIAGYAL 309
           E                                  A+ +F  + ++  V W  +I GY  
Sbjct: 331 ETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQ 390

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           HG   EA++L+  M   G + + +T + ++ + + LASL H KQ H   V+ G    +  
Sbjct: 391 HGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSV 450

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLC-KNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
           ++AL+  Y+K G I  A   FD + C ++ +SW ++I     HG  EEA+ELFE ML+ G
Sbjct: 451 SNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEG 510

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           +RP+H+T++ V SAC+ +GL  +G + F  M    KI P   HYACM++L GR GLL EA
Sbjct: 511 LRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEA 570

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
              I   P +     W +LL+ACRV+ N++LGK AAE+L  +EPE    Y  L N+Y++ 
Sbjct: 571 QEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSAC 630

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           GK +EAA++ ++++   ++     SWIEVK + HVF   D +H +  EIY  + ++  EI
Sbjct: 631 GKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEI 690

Query: 609 SKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
            K GYVP+  ++L D++E+ ++++L +HSEKLA+AFGLI+T D T L+I+++ R+C DCH
Sbjct: 691 KKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCH 750

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            AIK I+ + GREI+VRD +RFHHFKDG CSC DYW
Sbjct: 751 TAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 207/458 (45%), Gaps = 75/458 (16%)

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N VL  + + G M      FD++P+R+ VS   +I G  + G Y +A  +  D+ +E  +
Sbjct: 84  NTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIE 143

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               T   ++ + A    +  GK++HS  +K+G   NV VS +L++MY+KCG    A+ V
Sbjct: 144 PTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFV 203

Query: 289 FD-------------------------------EMSEKTTVGWNTIIAGYALHGYSEEAL 317
           FD                               +M+E+  V WN++I+G+   GY   AL
Sbjct: 204 FDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRAL 263

Query: 318 DLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
           D++ +M RDS +  D FT + ++  C  L  L   KQ H+ +V  GF +  +  +AL+  
Sbjct: 264 DIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISM 323

Query: 377 YSKWGRIEDAR---------------------------------HVFDKMLCKNVISWNA 403
           YS+ G +E AR                                 ++F  +  ++V++W A
Sbjct: 324 YSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTA 383

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           +I GY  HG   EA+ LF  M+  G RPN  T  A+LS  S       G +I  S  +  
Sbjct: 384 MIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSG 443

Query: 464 KIKPRAMHYACMIELLGREGLL---DEAFALIRGAPFKTTKNMWAALLTACRVNGNLE-- 518
           +I   ++  A +I +  + G +     AF LIR      +   W +++ A   +G+ E  
Sbjct: 444 EIYSVSVSNA-LITMYAKAGNITSASRAFDLIRCERDTVS---WTSMIIALAQHGHAEEA 499

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
           L  F    + G+ P+ ++ YV + +    +G + +  +
Sbjct: 500 LELFETMLMEGLRPDHIT-YVGVFSACTHAGLVNQGRQ 536



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 198/413 (47%), Gaps = 49/413 (11%)

Query: 75  IYTEELKESSL-PDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTY 133
           I+++ L++S L PD          C+ +EKL + K+    +          GFD+     
Sbjct: 265 IFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHI-------VTTGFDISGIVL 317

Query: 134 DALISA---CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLM--HVRCGMMIDARRLF 188
           +ALIS    C G+ + R        ++      DL +     L+  +++ G M  A+ +F
Sbjct: 318 NALISMYSRCGGVETARR-------LIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIF 370

Query: 189 DEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS 248
             + +R++V+   +I G    G Y EA  LF  +        S T A M+  ++ L  +S
Sbjct: 371 VSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLS 430

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGY 307
            GKQ+H  A+K G   +V VS ALI MY+K G+I  A   FD +  E+ TV W ++I   
Sbjct: 431 HGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIAL 490

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG-LD 366
           A HG++EEAL+L+  M   G++ DH T+  +   CT           HAGLV  G    D
Sbjct: 491 AQHGHAEEALELFETMLMEGLRPDHITYVGVFSACT-----------HAGLVNQGRQYFD 539

Query: 367 IVAN-----------SALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRG 414
           ++ +           + +VD + + G +++A+   +KM +  +V++W +L++    H   
Sbjct: 540 MMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNI 599

Query: 415 EEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           +      E++LL  + P N   + A+ +  S  G  E   +I +SM +D ++K
Sbjct: 600 DLGKVAAERLLL--LEPENSGAYSALANLYSACGKWEEAAKIRKSM-KDGRVK 649



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 151/310 (48%), Gaps = 13/310 (4%)

Query: 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL 317
           L+  F  N  +S      YSK G ++     FD++ ++ +V W T+I GY   G   +A+
Sbjct: 77  LRTAFSWNTVLSA-----YSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAI 131

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
            +  +M   G++   FT + ++        +E  K+ H+ +V+ G   ++  +++L++ Y
Sbjct: 132 RVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMY 191

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           +K G    A+ VFD+M+ +++ SWNA+IA +   G+ + A+  FEQM       + VT+ 
Sbjct: 192 AKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQM----AERDIVTWN 247

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL---LGREGLLDEAFALIRG 494
           +++S  ++ G   R  +IF  M RD  + P     A ++     L +  +  +  + I  
Sbjct: 248 SMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVT 307

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
             F  +  +  AL++     G +E  +   E+  G +  K+  +  LL+ Y   G + +A
Sbjct: 308 TGFDISGIVLNALISMYSRCGGVETARRLIEQ-RGTKDLKIEGFTALLDGYIKLGDMNQA 366

Query: 555 AEVIRTLRRK 564
             +  +L+ +
Sbjct: 367 KNIFVSLKDR 376



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 64/131 (48%), Gaps = 6/131 (4%)

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL-VRHGFGLDIVANSALVDFYSKWGRIE 384
           SG+    +  + ++ + ++     HA++    + +R  F  + V ++     YSK G ++
Sbjct: 43  SGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSA-----YSKRGDMD 97

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
                FD++  ++ +SW  +I GY N G+  +A+ +   M+  G+ P   T   VL++ +
Sbjct: 98  STCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVA 157

Query: 445 RSGLSERGWEI 455
            +   E G ++
Sbjct: 158 ATRCMETGKKV 168



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 333 FTFSMIIRICTRLASLE--------HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
            + S ++ +CT L             A+  H  +++ G    +   + L++ YSK G   
Sbjct: 7   LSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYAL 66

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            AR +FD+M  +   SWN +++ Y   G  +   E F+Q+
Sbjct: 67  HARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQL 106


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/610 (36%), Positives = 342/610 (56%), Gaps = 40/610 (6%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           GF     TY +++SAC     ++    + + +L      DL   N ++ M+ +CG +  A
Sbjct: 273 GFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLA 332

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           +R+F  + E + +S N +I G++  G   +A +LF  +             T++   +G 
Sbjct: 333 KRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGP 392

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS----------------------- 281
           +  S G+ LH   +K G G +  V  A+I MY+KCG                        
Sbjct: 393 DYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMI 452

Query: 282 --------IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
                   I  A+G FD M E+  V WN++++ Y  +G+SEE L LY  MR +GV+ D  
Sbjct: 453 TAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWI 512

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           TF+  IR C  LA ++   Q      + G  L++   +++V  YS+ G I++A++ FD +
Sbjct: 513 TFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSI 572

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             K++ISWNA++A +  +G G + ++ FE ML    +PNH+++++VLS CS  GL   G 
Sbjct: 573 DDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGK 632

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
             F SM+R   I P   H++CM++LLGR GLL++A  LI G PFK    +W+ALL +CRV
Sbjct: 633 HYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRV 692

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACS 573
           + +L L + AA+KL  ++ E    YV+L N+Y+ SG+L   A++ + ++ KG+R    CS
Sbjct: 693 HHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCS 752

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG-YVPEEKTLLPDVDEQEQRVL 632
           WIEV  + HVF   + SH Q KE+Y K++ MM  I   G Y+  E ++         R  
Sbjct: 753 WIEVDNRVHVFTVDETSHPQIKEVYLKLEEMMKMIEDTGKYITVESSV--------HRSK 804

Query: 633 SYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHF 692
            YHSEKLA AFGL+N   W P+ ++++ R+C DCH  IKL+++VT RE+++RD  RFHHF
Sbjct: 805 KYHSEKLAFAFGLLNLPSWMPIHVMKNLRVCDDCHLVIKLLSLVTSRELIMRDGYRFHHF 864

Query: 693 KDGMCSCGDY 702
           KDG+CSC DY
Sbjct: 865 KDGICSCKDY 874



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 114/442 (25%), Positives = 210/442 (47%), Gaps = 44/442 (9%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPER--NLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           +++  N ++   V    M DA +LFDEMP R  + VS   +I+G   +G +  +F  F  
Sbjct: 73  NIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSL 132

Query: 222 LWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           +  + +D G      +F ++++A   L    +  QLH+   K+GFG    +  +++ MY 
Sbjct: 133 MIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYV 192

Query: 278 KCGSIEDAQGV-------------------------------FDEMSEKTTVGWNTIIAG 306
           KCG ++ A+ V                               F+ M E+  V WNT+I+ 
Sbjct: 193 KCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISI 252

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           ++ HG+  + L ++ EM + G   +  T+  ++  C   + L+     HA ++R    LD
Sbjct: 253 FSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLD 312

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +V  + L+D Y+K G ++ A+ VF  +   + ISWN+LI G  + G GE+A+ LF QM  
Sbjct: 313 LVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRR 372

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
           + +  +      +L  CS    +  G E+    +    +   A     +I +  + G  D
Sbjct: 373 SSVVLDEFILPTILGVCSGPDYASTG-ELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTD 431

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIY 545
           +A  + R  P + T + W A++TA   +G  ++GK  A   + M PE+ +  +  +L+ Y
Sbjct: 432 KADLVFRLMPLRNTIS-WTAMITAFSRSG--DIGK--ARGYFDMMPERNIVTWNSMLSTY 486

Query: 546 NSSGKLKEAAEVIRTLRRKGLR 567
             +G  +E  ++  ++R  G++
Sbjct: 487 VQNGFSEEGLKLYVSMRSNGVQ 508



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 113/489 (23%), Positives = 210/489 (42%), Gaps = 67/489 (13%)

Query: 92  KPSAGICSQIEKLVLNKRYREALELFEIL---EFEGGFDVGSSTYDALISACIGLRSIRE 148
           K S    + I     N  +  + E F ++     +GG +    ++ +++ AC  L   R 
Sbjct: 105 KDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRL 164

Query: 149 VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG-------MMIDARR--------------- 186
             ++ + +   GF  +  ++N V+ M+V+CG       +  D  R               
Sbjct: 165 AIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQ 224

Query: 187 ---------LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATM 237
                    +F+ MPER+ VS N +I+     G  ++   +F+++  +       T+ ++
Sbjct: 225 MYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSV 284

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           + A A    +  G  LH+  L+M    ++     LIDMY+KCG ++ A+ VF  + E   
Sbjct: 285 LSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDH 344

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           + WN++I G    G  E+AL L+ +MR S V +D F    I+ +C+        +  H  
Sbjct: 345 ISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGY 404

Query: 358 LVRHGFGLDIVANSALVDFYSK---------------------W----------GRIEDA 386
            ++ G G      +A++  Y+K                     W          G I  A
Sbjct: 405 TIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKA 464

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           R  FD M  +N+++WN++++ Y  +G  EE ++L+  M  NG++P+ +TF   + AC+  
Sbjct: 465 RGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADL 524

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
            + + G ++    ++   +         ++ +  R GL+ EA         K   + W A
Sbjct: 525 AIVKLGMQVVTHATK-FGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLIS-WNA 582

Query: 507 LLTACRVNG 515
           +L A   NG
Sbjct: 583 MLAAFAQNG 591



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/216 (20%), Positives = 100/216 (46%), Gaps = 7/216 (3%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S +   V N    E L+L+  +    G      T+   I AC  L  ++   +V ++   
Sbjct: 481 SMLSTYVQNGFSEEGLKLYVSMR-SNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATK 539

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G   ++ + N ++ M+ RCG++ +A+  FD + +++L+S N ++A    +G  ++    
Sbjct: 540 FGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDT 599

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG---DNVFVSCALIDM 275
           F D+ +        ++ +++   + + L++ GK       ++ FG    N   SC ++D+
Sbjct: 600 FEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRV-FGISPTNEHFSC-MVDL 657

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALH 310
             + G +E A+ + + M  K     W+ ++    +H
Sbjct: 658 LGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVH 693


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/621 (37%), Positives = 356/621 (57%), Gaps = 33/621 (5%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N   +EA E+F+ +  +      S +++ +++A +    I + +R+F     +  + +L 
Sbjct: 155 NGYVKEAKEIFDEMPCKN-----SISWNGMLAAYVQNGRIEDARRLFE----SKADWELI 205

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD----- 221
             N ++  +V+   ++DAR +FD MPER+ VS N +I+G   +G+ LEA  LF +     
Sbjct: 206 SWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRD 265

Query: 222 --LWEEFS---------DCGSRTFATMI-RASAGLELISVG----KQLHSCA--LKMGFG 263
              W             D   R F  M  + S     I  G    K++       +    
Sbjct: 266 VFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPC 325

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
            NV     +I  Y++ G I  A+  FD M ++ ++ W  IIAGYA  GY EEAL L+ EM
Sbjct: 326 QNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 385

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
           +  G +++  TF+  +  C  +A+LE  KQ H  +V+ G        +AL+  Y K G I
Sbjct: 386 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNI 445

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           +DA  VF+ +  K V+SWN +IAGY  HG G+EA+ LFE M   G+ P+ VT + VLSAC
Sbjct: 446 DDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSAC 505

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S +GL ++G E F SM++D+ I   + HY CMI+LLGR G LD+A  L++  PF+     
Sbjct: 506 SHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAAT 565

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           W ALL A R++GN ELG+ AA+ ++ MEP+    YV+L N+Y +SG+  +   +   +R 
Sbjct: 566 WGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRD 625

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
           +G++ +P  SW+EV+ + H F  GD  H +   IY  ++ + L++ K GYV   K +L D
Sbjct: 626 RGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHD 685

Query: 624 VDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           V+E+E+  +L YHSEKLAVAFG++      P++++++ R+C DCHNA+K I+ + GR I+
Sbjct: 686 VEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLII 745

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           +RD+ RFHHF  G CSCGDYW
Sbjct: 746 LRDSHRFHHFNGGQCSCGDYW 766



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 97/437 (22%), Positives = 187/437 (42%), Gaps = 73/437 (16%)

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
           S   + D+   N  +  H+R G    A RLF+ MP R+ +S N +I+G + +    + F 
Sbjct: 42  SLATDADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSN----DKFY 97

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           L   L+E+       ++  MI        +   + L     +     +V    A++  Y+
Sbjct: 98  LARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFDQMPER----DVVSWNAMLSGYA 153

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           + G +++A+ +FDEM  K ++ WN ++A Y  +G  E+A  L+    D            
Sbjct: 154 QNGYVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKAD------------ 201

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
                                       ++++ + ++  Y K  R+ DAR +FD+M  ++
Sbjct: 202 ---------------------------WELISWNCMMGGYVKRNRLVDARGIFDRMPERD 234

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
            +SWN +I+GY  +G   EA  LFE+  +  +     T+ A++S   ++G+ +    +F 
Sbjct: 235 EVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRVFD 290

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
            M   + +      +  +I    +   +D+A  L    P +   + W  ++T    NG++
Sbjct: 291 GMPEKNSVS-----WNAIIAGYVQCKRMDQARELFEAMPCQNVSS-WNTMITGYAQNGDI 344

Query: 518 ELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM-------- 568
                 A   +   P++ S ++  ++  Y  SG  +EA  +   ++R G R+        
Sbjct: 345 A----QARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTST 400

Query: 569 LPACSWI---EVKKQPH 582
           L  C+ I   E+ KQ H
Sbjct: 401 LSTCAEIAALELGKQVH 417


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/594 (37%), Positives = 339/594 (57%), Gaps = 2/594 (0%)

Query: 112 EALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +AL LF E+L           T    + +C  + ++   + V +Y +  G   D ++ + 
Sbjct: 101 DALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSS 160

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ M+  CG +  AR +FD   E  +V  N I+A  + +GD++E   +F  + E      
Sbjct: 161 LIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFD 220

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             T  +++ A   +    +GK +     + G   N  +  AL+DMY+KCG I  A+ +FD
Sbjct: 221 EVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFD 280

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            M  +  V W+ +I+GY       EAL L+ EM+ + V+ +  T   ++  C  L +LE 
Sbjct: 281 GMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALET 340

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            K  H+ + R    L  +  +ALVDFY+K G I+DA   F+ M  KN  +W ALI G   
Sbjct: 341 GKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMAT 400

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           +GRG EA+ELF  M   G+ P  VTF+ VL ACS S L E G   F SM+RD+ IKPR  
Sbjct: 401 NGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVE 460

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HY CM++LLGR GL+DEA+  IR  P +    +W ALL++C V+ N+ +G+ A +++  +
Sbjct: 461 HYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISL 520

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
            P    +YV+L NIY S+G+ K+AA V + ++ +G+   P CS IE+      F + D  
Sbjct: 521 NPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSD 580

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTS 649
           H + +EIY+KV+ M+  I   GYVP    +  +V+E+E+ V +S+HSEKLA+AFGL+   
Sbjct: 581 HPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLD 640

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
               +++ ++ R+C DCH+A KLI+ V  REIVVRD + FHHFKDG CSC DYW
Sbjct: 641 PGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCSCNDYW 694


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/576 (36%), Positives = 355/576 (61%), Gaps = 4/576 (0%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           S   +L+ A     S+     + + ++ +    D ++ +R++ M+ + G   DA+RLFDE
Sbjct: 63  SIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDE 122

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFL-LFLDLWEEFS-DCGSRTFATMIRASAGLELIS 248
           MP ++LVS N +++G+   G YL A L  F  +  E        T  +++ A A +  + 
Sbjct: 123 MPNKDLVSWNSLMSGLSGRG-YLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALD 181

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
            GK LH   +K+G      V  +LI+MY K G ++ A  +F+EM  ++ V WN+++  + 
Sbjct: 182 EGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHN 241

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
            +GY+E+ +DL+  M+ +G+  D  T   ++R CT       A+  HA + R GF  DI+
Sbjct: 242 HNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADII 301

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             +AL++ Y+K GR+  +  +F+++  ++ I+W A++AGY  H  G EA++LF+ M+  G
Sbjct: 302 IATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEG 361

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           +  +HVTF  +LSACS SGL E G + F+ MS  ++++PR  HY+CM++LLGR G L++A
Sbjct: 362 VEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDA 421

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
           + LI+  P + +  +W ALL ACRV GN+ELGK  AE+L  ++P    NY++L NIY+++
Sbjct: 422 YELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAA 481

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           G  ++A++V   ++ + L   P CS+IE   + H F+ GDQ H ++ EI+ K++ ++ +I
Sbjct: 482 GLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKI 541

Query: 609 SKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
            + G  P+ + +L D+DE+ +  +++ HSEKLA+AFGL+ T    PL I ++ RIC DCH
Sbjct: 542 REAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCH 601

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +  K  +++  R I++RD+ RFHHF DG+CSC DYW
Sbjct: 602 STAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 167/340 (49%), Gaps = 9/340 (2%)

Query: 114 LELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLL 173
           L  F  +  E G      T  +++SAC  + ++ E K +   ++  G      + N ++ 
Sbjct: 148 LNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLIN 207

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+ + G +  A +LF+EMP R+LVS N ++     +G   +   LF  +     +    T
Sbjct: 208 MYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQAT 267

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
              ++RA     L    + +H+   + GF  ++ ++ AL+++Y+K G +  ++ +F+E+ 
Sbjct: 268 MVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIK 327

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK- 352
           ++  + W  ++AGYA+H    EA+ L+  M   GV++DH TF+ ++  C+    +E  K 
Sbjct: 328 DRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKK 387

Query: 353 --QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYG 409
             +  + + R    LD    S +VD   + GR+EDA  +   M +  +   W AL+    
Sbjct: 388 YFEIMSEVYRVEPRLD--HYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACR 445

Query: 410 NHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGL 448
            +G  E   E+ EQ+L   + P +H  ++ + +  S +GL
Sbjct: 446 VYGNVELGKEVAEQLL--SLDPSDHRNYIMLSNIYSAAGL 483



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 44/211 (20%), Positives = 98/211 (46%), Gaps = 5/211 (2%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N    + ++LF +++   G +   +T  AL+ AC      R+ + + +Y+   GF  D+ 
Sbjct: 243 NGYAEKGMDLFNLMK-RAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADII 301

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   +L ++ + G +  +  +F+E+ +R+ ++   ++AG        EA  LF  + +E 
Sbjct: 302 IATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEG 361

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF--VSCALIDMYSKCGSIED 284
            +    TF  ++ A +   L+  GK+      ++   +      SC ++D+  + G +ED
Sbjct: 362 VEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSC-MVDLLGRSGRLED 420

Query: 285 AQGVFDEMSEKTTVG-WNTIIAGYALHGYSE 314
           A  +   M  + + G W  ++    ++G  E
Sbjct: 421 AYELIKSMPMEPSSGVWGALLGACRVYGNVE 451


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/629 (34%), Positives = 362/629 (57%), Gaps = 40/629 (6%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           AL +F+  E +      S+TY  +IS       + E +++ + +++ GF+ DL +   ++
Sbjct: 192 ALRIFK--EMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALI 249

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            M+ +CG   +AR +FD+M +R++VS N++I   + +GD+ EA  L+  L  E       
Sbjct: 250 NMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKA 309

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           TF +++ A + ++ ++ G+ +HS  L+ G    V V+ AL++MY+KCGS+E+A+ VF+ M
Sbjct: 310 TFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAM 369

Query: 293 SEKTTVGWNTIIAGYALHGYSEEA----------------------------------LD 318
             +  V W+T+I  YA +GY ++A                                  + 
Sbjct: 370 KNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMK 429

Query: 319 LYYEMRDS-GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
           ++ EM  + G+K D  TF  ++  C  L  L   K  HA +       ++V  + L++ Y
Sbjct: 430 IFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMY 489

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           ++ G +E+A  +F     K V+SW A++A +  +GR  EA++LF++M L G++P+ VT+ 
Sbjct: 490 ARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYT 549

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
           ++L  C+  G  E+GW  F  M+  H + P A H+A M++LLGR G L +A  L+   PF
Sbjct: 550 SILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHFAAMVDLLGRSGRLFDAKELLESMPF 609

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
           +     W   LTACR++G LELG+ AAE++Y ++P   + Y+ + NIY + G  ++ A V
Sbjct: 610 EPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASV 669

Query: 558 IRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEE 617
            + +  +GL+ LP  S+IEV  + H F SG + H +T EI  ++ R+   +   GYVP+ 
Sbjct: 670 RKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDT 729

Query: 618 KTLLPDVDEQEQR-VLSYHSEKLAVAFGLINT-SDWTPLQIVQSHRICCDCHNAIKLIAM 675
           K +L DV E E+  +L YHSEK+A+AFGL+++     P+++V++ R+C DCH A K IA 
Sbjct: 730 KAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIAR 789

Query: 676 VTGREIVVRDASRFHHF-KDGMCSCGDYW 703
           + GR+I++RD +RFH F  DG CSCGDYW
Sbjct: 790 IAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 135/495 (27%), Positives = 241/495 (48%), Gaps = 49/495 (9%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV-KRVFSYML 157
           + I     N    EAL L+  +  +G       T+ +++ AC  L   RE+  RVF    
Sbjct: 80  AMIAAYAQNGHSTEALVLYWRMNLQG-LGTDHVTFVSVLGACSSLAQGREIHNRVFY--- 135

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
            +G +    + N ++ M+ R G + DA+R+F  +  R+  S N +I     SGD+  A  
Sbjct: 136 -SGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALR 194

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           +F ++  +     S T+  +I   +  E++  G+++H+  +  GF  ++ V+ ALI+MY 
Sbjct: 195 IFKEMKCDMKP-NSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYG 253

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           KCGS  +A+ VFD+M ++  V WN +I  Y  +G   EAL+LY ++   G K    TF  
Sbjct: 254 KCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVS 313

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           I+  C+ + +L   +  H+ ++  G   ++   +ALV+ Y+K G +E+AR VF+ M  ++
Sbjct: 314 ILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRD 373

Query: 398 VISWNALIAGYGNHGRGEE----------------------------------AVELFEQ 423
            ++W+ LI  Y ++G G++                                  A+++F +
Sbjct: 374 AVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFRE 433

Query: 424 ML-LNGMRPNHVTFLAVLSACSRSG-LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
           M    G++P+ VTF+AVL AC+  G LSE   +   +   + +++   +    +I +  R
Sbjct: 434 MTGAAGLKPDAVTFIAVLEACASLGRLSEV--KALHAQISESELESNVVVTNTLINMYAR 491

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL--ELGKFAAEKLYGMEPEKLSNYV 539
            G L+EA  L   A  KT  + W A++ A    G     L  F    L G++P+ ++ Y 
Sbjct: 492 CGSLEEAERLFAAAKEKTVVS-WTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVT-YT 549

Query: 540 VLLNIYNSSGKLKEA 554
            +L +    G L++ 
Sbjct: 550 SILFVCTHGGSLEQG 564



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 202/423 (47%), Gaps = 51/423 (12%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N  + EALEL++ L+ E GF    +T+ +++ AC  ++++ + + V S++L  G + +
Sbjct: 284 VQNGDFHEALELYQKLDME-GFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSE 342

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG---DYLEAFLLFLD 221
           + +   ++ M+ +CG + +AR++F+ M  R+ V+ + +I     +G   D  +A  +F  
Sbjct: 343 VAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDR 402

Query: 222 LWEEFSDC--------------------------------GSRTFATMIRASAGLELISV 249
           L    + C                                 + TF  ++ A A L  +S 
Sbjct: 403 LGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE 462

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
            K LH+   +     NV V+  LI+MY++CGS+E+A+ +F    EKT V W  ++A ++ 
Sbjct: 463 VKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQ 522

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIV 368
           +G   EALDL+ EM   GVK D  T++ I+ +CT   SLE   +    +   HG      
Sbjct: 523 YGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTAD 582

Query: 369 ANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGR---GEEAVELFEQM 424
             +A+VD   + GR+ DA+ + + M    + ++W   +     HG+   GE A E   ++
Sbjct: 583 HFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYEL 642

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
             +   P    ++A+ +  +  G+    WE   S+ +  K++ R +     +  +  +G 
Sbjct: 643 DPSSTAP----YIAMSNIYAAHGM----WEKVASVRK--KMEERGLKKLPGLSFIEVDGK 692

Query: 485 LDE 487
           L E
Sbjct: 693 LHE 695



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 170/369 (46%), Gaps = 42/369 (11%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           TF T++ + +    ++ G+ LH       F  +  V  ALI MY KC S+ DA+ VF+ M
Sbjct: 9   TFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESM 68

Query: 293 S--EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
              ++  V WN +IA YA +G+S EAL LY+ M   G+  DH TF  ++  C+ LA    
Sbjct: 69  DWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA---Q 125

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            ++ H  +   G        +ALV  Y+++G + DA+ +F  +  ++  SWNA+I  +  
Sbjct: 126 GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQ 185

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD-------- 462
            G    A+ +F++M  + M+PN  T++ V+S  S   +   G +I   +  +        
Sbjct: 186 SGDWSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVV 244

Query: 463 ---------------------HKIKPRAM-HYACMIELLGREGLLDEAFALIRG---APF 497
                                 K+K R M  +  MI    + G   EA  L +      F
Sbjct: 245 ATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGF 304

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLY--GMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           K TK  + ++L AC     L  G+     +   G++ E ++    L+N+Y   G L+EA 
Sbjct: 305 KRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSE-VAVATALVNMYAKCGSLEEAR 363

Query: 556 EVIRTLRRK 564
           +V   ++ +
Sbjct: 364 KVFNAMKNR 372



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 2/116 (1%)

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
           D+ TF  ++  C+    +   +  H  +    F  D +  +AL+  Y K   + DAR VF
Sbjct: 6   DNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVF 65

Query: 391 DKM--LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           + M    +NV+SWNA+IA Y  +G   EA+ L+ +M L G+  +HVTF++VL ACS
Sbjct: 66  ESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/612 (36%), Positives = 358/612 (58%), Gaps = 3/612 (0%)

Query: 90  MKKPSAGICSQ-IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIRE 148
           +KKP   + S  I  L    +  E+++LF ++   G       T  +L+SA     +++ 
Sbjct: 375 IKKPDIVVWSALITCLDQQGQSEESIKLFHLMRL-GDTLPNQYTICSLLSAATNTGNLQY 433

Query: 149 VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
            + + + +   GFE D+ + N ++ M+++ G + D  +L++ M +R+L+S N  ++G+ D
Sbjct: 434 GQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHD 493

Query: 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
            G Y     +F  + EE       TF +++ + + L  +  G+Q+H+  +K    DN FV
Sbjct: 494 CGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFV 553

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
             ALIDMY+KC  +EDA   F+ +S +    W  II  YA     E+AL+ + +M+  GV
Sbjct: 554 CTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGV 613

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
           K + FT +  +  C+ LASLE  +Q H+ + + G   D+   SALVD Y+K G +E+A  
Sbjct: 614 KPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEA 673

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           +F+ ++ ++ I+WN +I GY  +G+G +A+  F  ML  G+ P+ VTF  +LSACS  GL
Sbjct: 674 LFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGL 733

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
            E G E F SM RD  I P   H ACM+++LGR G  DE    I+         +W  +L
Sbjct: 734 VEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNALIWETVL 793

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
            A +++ NL LG+ AA KL+ ++PE+ S+Y++L NI+ + G+  +   V   +  KG++ 
Sbjct: 794 GASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLMSSKGVKK 853

Query: 569 LPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE 628
            P CSW+E   Q H F+S D SH Q +EI+ K+D +  E++   YVP+ + +L +V E E
Sbjct: 854 EPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVLHNVGETE 913

Query: 629 QR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDAS 687
           ++  L +HSE+LA+ F LI+TS    ++I ++ RIC DCH+ +K I+ +T +EIVVRD  
Sbjct: 914 KKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQEIVVRDVR 973

Query: 688 RFHHFKDGMCSC 699
           RFHHFK+G CSC
Sbjct: 974 RFHHFKNGACSC 985



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 180/344 (52%), Gaps = 1/344 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I+ LV      +++ LF+ ++ EG       T    + AC    ++   K++ +     G
Sbjct: 185 IQGLVAEGFANDSIYLFQEMQNEGIMP-NEFTLATGLKACSLCMALDLGKQMHAQAFKLG 243

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              DL++ + ++ ++ +CG +  A ++F  MPE+N V+ N+++ G    GD      LF 
Sbjct: 244 LLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFC 303

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            + E    C   T  T+++  A  + +  G+ +HS  +K G+  N F+ C L+DMYSKCG
Sbjct: 304 SMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCG 363

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
              DA GVF  + +   V W+ +I      G SEE++ L++ MR      + +T   ++ 
Sbjct: 364 LAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLS 423

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
             T   +L++ +  HA + ++GF  D+  ++ALV  Y K G + D   +++ M+ +++IS
Sbjct: 424 AATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLIS 483

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           WNA ++G  + G  +  + +F  ML  G  PN  TF+++L +CS
Sbjct: 484 WNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCS 527



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 169/323 (52%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y +++  C   RS+   K +   ++     PD ++   ++ ++ +C     AR +  +MP
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           +R++VS   +I G++  G   ++  LF ++  E       T AT ++A +    + +GKQ
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H+ A K+G   ++FV  AL+D+Y+KCG IE A  +F  M E+  V WN ++ GYA  G 
Sbjct: 235 MHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGD 294

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
               L L+  M +  VK + FT + +++ C    +L+  +  H+ +++ G+  +      
Sbjct: 295 VTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCG 354

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           LVD YSK G   DA  VF  +   +++ W+ALI      G+ EE+++LF  M L    PN
Sbjct: 355 LVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPN 414

Query: 433 HVTFLAVLSACSRSGLSERGWEI 455
             T  ++LSA + +G  + G  I
Sbjct: 415 QYTICSLLSAATNTGNLQYGQSI 437


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/629 (34%), Positives = 362/629 (57%), Gaps = 40/629 (6%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           AL +F+  E +      S+TY  +IS       + E +++ + +++ GF+ DL +   ++
Sbjct: 192 ALRIFK--EMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALI 249

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            M+ +CG   +AR +FD+M +R++VS N++I   + +GD+ EA  L+  L  E       
Sbjct: 250 NMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKA 309

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           TF +++ A + ++ ++ G+ +HS  L+ G    V V+ AL++MY+KCGS+E+A+ VF+ M
Sbjct: 310 TFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAM 369

Query: 293 SEKTTVGWNTIIAGYALHGYSEEA----------------------------------LD 318
             +  V W+T+I  YA +GY ++A                                  + 
Sbjct: 370 KNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMK 429

Query: 319 LYYEMRDS-GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
           ++ EM  + G+K D  TF  ++  C  L  L   K  HA +       ++V  + L++ Y
Sbjct: 430 IFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMY 489

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           ++ G +E+A  +F     K V+SW A++A +  +GR  EA++LF++M L G++P+ VT+ 
Sbjct: 490 ARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVTYT 549

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
           ++L  C+  G  E+GW  F  M+  H + P A H+A M++LLGR G L +A  L+   PF
Sbjct: 550 SILFVCTHGGSLEQGWRYFTDMAELHALAPTADHFAAMVDLLGRSGRLFDAKELLESMPF 609

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
           +     W   LTACR++G LELG+ AAE++Y ++P   + Y+ + NIY + G  ++ A V
Sbjct: 610 EPDPVAWMTFLTACRIHGKLELGEAAAERVYELDPSSTAPYIAMSNIYAAHGMWEKVASV 669

Query: 558 IRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEE 617
            + +  +GL+ LP  S+IEV  + H F SG + H +T EI  ++ R+   +   GYVP+ 
Sbjct: 670 RKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHPRTDEICEELTRLHGLMRAAGYVPDT 729

Query: 618 KTLLPDVDEQEQR-VLSYHSEKLAVAFGLINT-SDWTPLQIVQSHRICCDCHNAIKLIAM 675
           K +L DV E E+  +L YHSEK+A+AFGL+++     P+++V++ R+C DCH A K IA 
Sbjct: 730 KAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGSGEPIRVVKNLRVCSDCHTATKFIAR 789

Query: 676 VTGREIVVRDASRFHHF-KDGMCSCGDYW 703
           + GR+I+VRD +RFH F  DG CSCGDYW
Sbjct: 790 IAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 136/495 (27%), Positives = 242/495 (48%), Gaps = 49/495 (9%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV-KRVFSYML 157
           + I     N    EAL L+  +  +G       T+ +++ AC  L   RE+  RVF    
Sbjct: 80  AMIAAYAQNGHSTEALVLYWRMNLQG-LGTDHVTFVSVLGACSSLAQGREIHNRVFY--- 135

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
            +G +    + N ++ M+ R G + DA+R+F  +  R+  S N +I     SGD+  A  
Sbjct: 136 -SGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALR 194

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           +F ++  +     S T+  +I   +  E++  G+++H+  +  GF  ++ V+ ALI+MY 
Sbjct: 195 IFKEMKCDVKP-NSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYG 253

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           KCGS  +A+ VFD+M ++  V WN +I  Y L+G   EAL+LY ++   G K    TF  
Sbjct: 254 KCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVS 313

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           I+  C+ + +L   +  H+ ++  G   ++   +ALV+ Y+K G +E+AR VF+ M  ++
Sbjct: 314 ILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRD 373

Query: 398 VISWNALIAGYGNHGRGEE----------------------------------AVELFEQ 423
            ++W+ LI  Y ++G G++                                  A+++F +
Sbjct: 374 AVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFRE 433

Query: 424 ML-LNGMRPNHVTFLAVLSACSRSG-LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
           M    G++P+ VTF+AVL AC+  G LSE   +   +   + +++   +    +I +  R
Sbjct: 434 MTGAAGLKPDAVTFIAVLEACASLGRLSEV--KALHAQISESELESNVVVTNTLINMYAR 491

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL--ELGKFAAEKLYGMEPEKLSNYV 539
            G L+EA  L   A  KT  + W A++ A    G     L  F    L G++P+ ++ Y 
Sbjct: 492 CGSLEEAERLFAAAKEKTVVS-WTAMVAAFSQYGRYAEALDLFQEMDLEGVKPDDVT-YT 549

Query: 540 VLLNIYNSSGKLKEA 554
            +L +    G L++ 
Sbjct: 550 SILFVCTHGGSLEQG 564



 Score =  142 bits (357), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 204/423 (48%), Gaps = 51/423 (12%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           VLN  + EALEL++ L+ E GF    +T+ +++ AC  ++++ + + V S++L  G + +
Sbjct: 284 VLNGDFHEALELYQKLDME-GFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSE 342

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG---DYLEAFLLF-- 219
           + +   ++ M+ +CG + +AR++F+ M  R+ V+ + +I     +G   D  +A  +F  
Sbjct: 343 VAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDR 402

Query: 220 -------------------------LDLWEEFSDCG-----SRTFATMIRASAGLELISV 249
                                    + ++ E +        + TF  ++ A A L  +S 
Sbjct: 403 LGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE 462

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
            K LH+   +     NV V+  LI+MY++CGS+E+A+ +F    EKT V W  ++A ++ 
Sbjct: 463 VKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQ 522

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIV 368
           +G   EALDL+ EM   GVK D  T++ I+ +CT   SLE   +    +   H       
Sbjct: 523 YGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTAD 582

Query: 369 ANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGR---GEEAVELFEQM 424
             +A+VD   + GR+ DA+ + + M    + ++W   +     HG+   GE A E   ++
Sbjct: 583 HFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYEL 642

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
             +   P    ++A+ +  +  G+    WE   S+ +  K++ R +     +  +  +G 
Sbjct: 643 DPSSTAP----YIAMSNIYAAHGM----WEKVASVRK--KMEERGLKKLPGLSFIEVDGK 692

Query: 485 LDE 487
           L E
Sbjct: 693 LHE 695



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 168/369 (45%), Gaps = 42/369 (11%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           TF T++ + +    +  G+ LH       F  +  V  ALI MY KC S+ DA+ VF+ M
Sbjct: 9   TFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESM 68

Query: 293 S--EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
              ++  V WN +IA YA +G+S EAL LY+ M   G+  DH TF  ++  C+ LA    
Sbjct: 69  DWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLA---Q 125

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            ++ H  +   G        +ALV  Y+++G + DA+ +F  +  ++  SWNA+I  +  
Sbjct: 126 GREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQ 185

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD-------- 462
            G    A+ +F++M  + ++PN  T++ V+S  S   +   G +I   +  +        
Sbjct: 186 SGDWSGALRIFKEMKCD-VKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVV 244

Query: 463 ---------------------HKIKPRAM-HYACMIELLGREGLLDEAFALIRG---APF 497
                                 K+K R M  +  MI      G   EA  L +      F
Sbjct: 245 ATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGF 304

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLY--GMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           K TK  + ++L AC     L  G+     +   G++ E ++    L+N+Y   G L+EA 
Sbjct: 305 KRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSE-VAVATALVNMYAKCGSLEEAR 363

Query: 556 EVIRTLRRK 564
           +V   ++ +
Sbjct: 364 KVFNAMKNR 372



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 65/116 (56%), Gaps = 2/116 (1%)

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
           D+ TF  ++  C+    +   +  H  +    F  D +  +AL+  Y K   + DAR VF
Sbjct: 6   DNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVF 65

Query: 391 DKM--LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           + M    +NV+SWNA+IA Y  +G   EA+ L+ +M L G+  +HVTF++VL ACS
Sbjct: 66  ESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACS 121


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/530 (40%), Positives = 320/530 (60%), Gaps = 1/530 (0%)

Query: 175 HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF 234
           HV+ G +  A ++FDEM ERN+ + N +++G+I          LF ++ E        T 
Sbjct: 33  HVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFLPDEFTL 92

Query: 235 ATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE 294
            +++R  AGL     GKQ+H+  LK G+  N+ V  +L  MY K GS+ + + V   M  
Sbjct: 93  GSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRI 152

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
           +  V WNT+IAG A +G+ E  LDLY  M+ SG++ D  T   +I     LA+L   +Q 
Sbjct: 153 RNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQI 212

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414
           HA  ++ G    +   S+L+  YSK G +ED+          + + W+++IA YG HGRG
Sbjct: 213 HAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRG 272

Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474
           EEAV LFEQM   G+  N VTFL++L ACS +GL E+G   F+ M   + +KPR  HY C
Sbjct: 273 EEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTC 332

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534
           +++LLGR G LDEA A+IR  P +    +W  LL+ACR++ N ++    AE++  + P+ 
Sbjct: 333 VVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQD 392

Query: 535 LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQT 594
            + YV+L NI+ S+ + K+ ++V  T+R + ++  P  SW+EVK +   F  GD+SH  +
Sbjct: 393 SATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMS 452

Query: 595 KEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTP 653
           +EI   +  +M E+   GYVP+  T+  D D E+++  L  HSEKLA+AFGL+N    +P
Sbjct: 453 EEIDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSP 512

Query: 654 LQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++++++ RIC DCH AIKLI+ +  REI+VRD SRFHHFK G CSCGDYW
Sbjct: 513 IRVMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 166/350 (47%), Gaps = 12/350 (3%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           E GF     T  +++  C GLR+    K+V +Y+L  G+E +L + + +  M+++ G + 
Sbjct: 82  ELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLG 141

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMI 238
           +  ++   M  RN+V+ N +IAG   +G     F   LDL+      G R    T  ++I
Sbjct: 142 EGEKVIKAMRIRNVVAWNTLIAGNAQNGH----FEGVLDLYNMMKMSGLRPDKITLVSVI 197

Query: 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV 298
            +SA L  +  G+Q+H+ A+K G    V V  +LI MYSKCG +ED+     +     +V
Sbjct: 198 SSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSV 257

Query: 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
            W+++IA Y  HG  EEA+ L+ +M   G+  +  TF  ++  C+     E        +
Sbjct: 258 LWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLM 317

Query: 359 V-RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEE 416
           V ++G    +   + +VD   + G +++A  +   M L  +V+ W  L++    H   + 
Sbjct: 318 VEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADM 377

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           A    E++L   + P       +LS    S    +     ++  RD  +K
Sbjct: 378 ATRTAEEILR--LNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVK 425



 Score = 46.2 bits (108), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 4/83 (4%)

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           Y K G I++A   F+ M  +N++S N LI G+  HG  + A+++F++ML      N  T+
Sbjct: 2   YFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEML----ERNVATW 57

Query: 437 LAVLSACSRSGLSERGWEIFQSM 459
            A++S   +   +E G  +F+ M
Sbjct: 58  NAMVSGLIQFEFNENGLFLFREM 80


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/606 (36%), Positives = 347/606 (57%), Gaps = 4/606 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   V N R+  AL  F  +  +        T+     A   LRS    K+V +  +  G
Sbjct: 80  IAGSVQNGRFTSALFHFSNMRRDS-IQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAG 138

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              D+++      M+ + G+  +AR++FDEMPERN+ + N  ++  +  G Y +A   F+
Sbjct: 139 QISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFI 198

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           +   E  +    TF   + A AG   + +G+QLH   L+ GF  +V V+  LID Y KC 
Sbjct: 199 EFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCH 258

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            +  ++ +F  +S+   V W ++I  Y  +   E+A  ++   R  G++   F  S ++ 
Sbjct: 259 QVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLS 318

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C  L+ LE  K  H   V+     +I   SALVD Y K G IEDA   FD+M  +N+++
Sbjct: 319 ACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVT 378

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMR--PNHVTFLAVLSACSRSGLSERGWEIFQS 458
           WNA+I GY + G+ + AV LF++M     R  PN+VTF+ VLSACSR+G    G EIF+S
Sbjct: 379 WNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFES 438

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M   + I+P A HYAC+++LLGR G++++A+  I+  P + T ++W ALL A ++ G  E
Sbjct: 439 MRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSE 498

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           LGK AA+ L+ ++P    N+V+L N++ ++G+ +EA  V + ++  G++    CSWI   
Sbjct: 499 LGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAG 558

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSE 637
              HVF + D SH +  EI   + ++  E+   GY+P+    L D++E+E+ + + YHSE
Sbjct: 559 NAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSE 618

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           K+A+AFGLI+     P++I ++ RIC DCH+AIK I+ + GREI+VRD + FH F+D  C
Sbjct: 619 KIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQC 678

Query: 698 SCGDYW 703
           SC DYW
Sbjct: 679 SCRDYW 684



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 200/435 (45%), Gaps = 41/435 (9%)

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
           ++ N ++ M+ +      A+ L    P R++V+   +IAG + +G +  A   F ++  +
Sbjct: 43  FIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRD 102

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                  TF    +AS  L    VGKQ+H+ A+K G   +VFV C+  DMYSK G  E+A
Sbjct: 103 SIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEA 162

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
           + +FDEM E+    WN  ++   L G  ++AL  + E R  G + +  TF   +  C   
Sbjct: 163 RKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGA 222

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           + L   +Q H  +++ GF  D+   + L+DFY K  ++  +  +F  +   N +SW ++I
Sbjct: 223 SYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMI 282

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
             Y  +   E+A  +F +    G+ P      +VLSAC+   + E G  +  +++    +
Sbjct: 283 VSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSV-HTLAVKACV 341

Query: 466 KPRAMHYACMIELLGREGLLDEA---------------FALIRGAPFKTTKNMWAAL--- 507
                  + ++++ G+ G +++A                A+I G   +   +M   L   
Sbjct: 342 VGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDE 401

Query: 508 ------------------LTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYN 546
                             L+AC   G++ +G    E +   YG+EP    +Y  ++++  
Sbjct: 402 MTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEP-GAEHYACVVDLLG 460

Query: 547 SSGKLKEAAEVIRTL 561
            +G +++A + I+ +
Sbjct: 461 RAGMVEQAYQFIKKM 475


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/607 (36%), Positives = 352/607 (57%), Gaps = 35/607 (5%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  L+ +C   ++  E +++ + ++  G E D Y    ++ M+ R G + DAR++FD  
Sbjct: 85  TFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXS 144

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLF---------------------------LDLWE 224
            +R++VSC  +I G    GD   A  +F                           L+L++
Sbjct: 145 SQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFK 204

Query: 225 EFSDCGSR----TFATMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSCALIDMYSKC 279
           E      R    T  +++ A A    I +G+++H+      GFG ++ +  A I +YSKC
Sbjct: 205 EMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKC 264

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           G +E A G+F+ +S K  V WNT+I GY      +EAL L+ EM  SG   +  T   ++
Sbjct: 265 GDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVL 324

Query: 340 RICTRLASLEHAKQAHAGLVRH--GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
             C  L +++  +  H  + +   G        ++L+D Y+K G IE A  VF+ M+ K+
Sbjct: 325 PACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKS 384

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           + SWNA+I G+  HGR   A +LF +M  NG+ P+ +T + +LSACS SGL + G  IF+
Sbjct: 385 LSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFK 444

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
           S+++D+ I P+  HY CMI+LLG  GL  EA  +I   P +    +W +LL AC+++GNL
Sbjct: 445 SVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNL 504

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
           EL +  A+KL  +EPE   +YV+L NIY ++G+ ++ A +   L  KG++ +P CS IE+
Sbjct: 505 ELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEI 564

Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHS 636
               H F+ GD+ H Q++EIYR ++ M + + + G+VP+   +L +++E+ ++  L +HS
Sbjct: 565 DSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHS 624

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           EKLA+AFGLI+T   T L +V++ R+C +CH A KLI+ +  REIV RD +RFHHF+DG+
Sbjct: 625 EKLAIAFGLISTKPGTKLTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGV 684

Query: 697 CSCGDYW 703
           CSC DYW
Sbjct: 685 CSCCDYW 691



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/451 (26%), Positives = 205/451 (45%), Gaps = 77/451 (17%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A  +F+   E NL+  N ++ G+  S D +    +++ +        + TF  ++++ A 
Sbjct: 36  AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAK 95

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA------------------ 285
            +    G+Q+H+  +K+G   + +   +LI MY++ G +EDA                  
Sbjct: 96  SKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTAL 155

Query: 286 -------------QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332
                        + VFD ++E+  V WN +I GY  +   EEAL+L+ EM  + V+ D 
Sbjct: 156 ITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDE 215

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLV--RHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
            T   ++  C +  S+E  ++ H  LV   HGFG  +   +A +  YSK G +E A  +F
Sbjct: 216 GTLVSVLSACAQSGSIELGREIHT-LVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLF 274

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
           + + CK+V+SWN LI GY +    +EA+ LF++ML +G  PN VT L+VL AC+  G  +
Sbjct: 275 EGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAID 334

Query: 451 RG-W------------------------------------EIFQSMSRDHKIKPRAMHYA 473
            G W                                    ++F SM         AM + 
Sbjct: 335 IGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFG 394

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF---AAEKLYGM 530
               + GR     + F+ +R    +        LL+AC  +G L+LG+    +  + Y +
Sbjct: 395 --FAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNI 452

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            P KL +Y  ++++   +G  KEA E+I  +
Sbjct: 453 TP-KLEHYGCMIDLLGHAGLFKEAEEIIHMM 482



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 153/343 (44%), Gaps = 77/343 (22%)

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A  VF+   E   + WNT++ G A        L++Y  M   G   + +TF  +++ C +
Sbjct: 36  AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAK 95

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA------------------ 386
             + E  +Q HA +++ G  LD  A+++L+  Y++ GR+EDA                  
Sbjct: 96  SKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTAL 155

Query: 387 -------------RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
                        R VFD +  ++V+SWNA+I GY  +   EEA+ELF++M+   +RP+ 
Sbjct: 156 ITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDE 215

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
            T ++VLSAC++SG  E G EI   +   H                              
Sbjct: 216 GTLVSVLSACAQSGSIELGREIHTLVDDHHGF---------------------------- 247

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
           G+  K   N +  L + C   G++E+   A+    G+  + + ++  L+  Y      KE
Sbjct: 248 GSSLKIV-NAFIGLYSKC---GDVEI---ASGLFEGLSCKDVVSWNTLIGGYTHMNLYKE 300

Query: 554 AAEVIRTLRRKG--------LRMLPACSW---IEVKKQPHVFL 585
           A  + + + R G        L +LPAC+    I++ +  HV++
Sbjct: 301 ALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYI 343


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/595 (36%), Positives = 345/595 (57%), Gaps = 12/595 (2%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +A+ LF  +  E G    SS Y  L+ + +  R++   +++ ++++  G   +  +   +
Sbjct: 165 KAVGLFSRM-LESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGI 223

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+V+CG ++ A+R+FD+M  +  V+   ++ G   +G   +A  LF+DL  E  +  S
Sbjct: 224 VNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDS 283

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
             F+ +++A A LE +  GKQ+H+C  K+G    V V   L+D Y KC S E A   F E
Sbjct: 284 FVFSVVLKACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQE 343

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSMIIRICTRLASLEH 350
           + E   V W+ II+GY      EEA+  +  +R  + V ++ FT++ I + C+ LA    
Sbjct: 344 IREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNI 403

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
             Q HA  ++          SAL+  YSK G ++DA  VF+ M   ++++W A I+G+  
Sbjct: 404 GGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAY 463

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           +G   EA+ LFE+M+  GM+PN VTF+AVL+ACS +GL E+G     +M R + + P   
Sbjct: 464 YGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTID 523

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HY CMI++  R GLLDEA   ++  PF+     W   L+ C  + NLELGK A E+L  +
Sbjct: 524 HYDCMIDIYARSGLLDEALRFMKNMPFEPDAMSWKCFLSGCWTHKNLELGKIAGEELRQL 583

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           +PE  + YV+  N+Y  +GK +EAAEV++ +  + L+   +CSWI+ K + H F+ GD+ 
Sbjct: 584 DPEDTAGYVLPFNLYTWAGKWEEAAEVMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKH 643

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLI--NT 648
           H Q++EIY K+          G++ E       + E+ +++L  HSE+LA+AFGLI  N 
Sbjct: 644 HPQSQEIYEKLKEF------DGFM-EGDMFQCSMTERREQLLD-HSERLAIAFGLISVNG 695

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +   P+++ ++ R C DCH   K +++VTG EIV+RD+ RFHHFK+G CSC DYW
Sbjct: 696 NARAPIKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 750



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 141/510 (27%), Positives = 235/510 (46%), Gaps = 56/510 (10%)

Query: 100 QIEKLVL-----NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFS 154
           Q+E L L     + +  EA E F+ ++ + G  V   +Y  L  AC  LRS+    R+  
Sbjct: 47  QVENLHLVSLSKHGKLNEAFEFFQEMD-KAGVSVSLYSYQCLFEACRELRSLSH-GRLLH 104

Query: 155 YMLSTGFE-PDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
             +  G E P + ++N VL M+  CG + DA +LFDEM + N VS   +I+   + G   
Sbjct: 105 NRMRMGIENPSVLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLD 164

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           +A  LF  + E      S  + T++++      + +G+Q+H+  ++ G   N  +   ++
Sbjct: 165 KAVGLFSRMLESGDKPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIV 224

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           +MY KCG +  A+ VFD+M+ K  V W  ++ GY   G + +AL L+ ++   GV+ D F
Sbjct: 225 NMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSF 284

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
            FS++++ C  L  L   KQ HA + + G   ++   + LVDFY K    E A   F ++
Sbjct: 285 VFSVVLKACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEI 344

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLL-NGMRPNHVTFLAVLSAC--------- 443
              N +SW+A+I+GY    + EEAV+ F+ +   N +  N  T+ ++  AC         
Sbjct: 345 REPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIG 404

Query: 444 --------------------------SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
                                     S+ G  +   E+F+SM       P  + +   I 
Sbjct: 405 GQVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMD-----NPDIVAWTAFIS 459

Query: 478 LLGREGLLDEAFALIR---GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL---YGME 531
                G   EA  L         K     + A+LTAC   G +E GK   + +   Y + 
Sbjct: 460 GHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVA 519

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           P  + +Y  +++IY  SG L EA   ++ +
Sbjct: 520 P-TIDHYDCMIDIYARSGLLDEALRFMKNM 548


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/586 (36%), Positives = 344/586 (58%), Gaps = 12/586 (2%)

Query: 126 FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
           +    + Y  ++ +C+  R++R  +++ + +L +G   D  +  R++ ++  CG++  AR
Sbjct: 59  YPYNHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVAR 118

Query: 186 RLFDEMPER-NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-----TFATMIR 239
           RLFDEMP + N+   N++I      G    A    ++L+ E   CGS      T+  +++
Sbjct: 119 RLFDEMPNQGNVFLWNVLIRAYARDGPREAA----IELYREMLACGSMEPDNFTYPPVLK 174

Query: 240 ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
           A A L  +  G+++H   ++  +  +VFV   LIDMY+KCG +++A  VFD  + +  V 
Sbjct: 175 ACAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVV 234

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           WN++IA    +G   EAL L   M   G+     T    I       +L   ++ H    
Sbjct: 235 WNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGW 294

Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVE 419
           R GFG      ++L+D Y+K G +  AR +FD++  + +ISWNA+I G+G HG  + A E
Sbjct: 295 RRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACE 354

Query: 420 LFEQMLLNG-MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478
           LF +M     + P+H+TF+ VLSAC+  G+ +   E+F  M   + IKP   HY C++++
Sbjct: 355 LFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDV 414

Query: 479 LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538
           LG  G   EA  +I+G   K    +W ALL  C+++ N+EL + A  KL  +EPE   NY
Sbjct: 415 LGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNY 474

Query: 539 VVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIY 598
           V+L NIY  SGK +EAA V + +  +GL+ + ACSWIE+K + H FL GD SH ++ EIY
Sbjct: 475 VLLSNIYAQSGKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIY 534

Query: 599 RKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIV 657
            +++R+   IS+ GYVP+  ++  +V++ E+R ++  HSE+LA+AFGLI+T   T L + 
Sbjct: 535 EELERLEGLISQTGYVPDTTSVFHNVEDDEKRNMVRGHSERLAIAFGLISTPPGTKLLVT 594

Query: 658 QSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++ R+C DCH  IKLI+ +  REI++RD +R+HHF +G CSC D+W
Sbjct: 595 KNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 640



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 153/316 (48%), Gaps = 7/316 (2%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           A+EL+  +   G  +  + TY  ++ AC  L  +   + V   ++ T +  D+++   ++
Sbjct: 149 AIELYREMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWAADVFVCAGLI 208

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            M+ +CG + +A  +FD    R+ V  N +IA    +G   EA  L  ++  E       
Sbjct: 209 DMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIV 268

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T  + I A+A    +  G++LH    + GFG    +  +L+DMY+K G +  A+ +FD++
Sbjct: 269 TLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQL 328

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM-DHFTFSMIIRICTRLASLEHA 351
             +  + WN +I G+ +HG+++ A +L+  MR+    M DH TF  ++  C     ++ A
Sbjct: 329 FHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEA 388

Query: 352 KQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYG 409
           K+    +V  +     +   + LVD     GR ++A  V   ML K +   W AL+ G  
Sbjct: 389 KEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCK 448

Query: 410 NHGRGEEAVELFEQML 425
            H    + VEL E  L
Sbjct: 449 IH----KNVELAELAL 460


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/595 (37%), Positives = 350/595 (58%), Gaps = 12/595 (2%)

Query: 100 QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           Q++   L       + L  +L  +G    G+S +   I AC+      + K     +L T
Sbjct: 103 QMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGT 162

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
                      +L M+ +CG ++ ARR+FD MP RN V+ + +I G +      +AFLLF
Sbjct: 163 A----------LLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLF 212

Query: 220 LD-LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
              L +        + A+ +RA A L+ + +G+QLH+   K G   ++    +L+ MY+K
Sbjct: 213 KAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK 272

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            G I+ A  +FDEM+ K TV ++ +++GY  +G +EEA  ++ +M+   V+ D  T   +
Sbjct: 273 AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSL 332

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           I  C+ LA+L+H + +H  ++  G   +    +AL+D Y+K GRI+ +R VF+ M  +++
Sbjct: 333 IPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDI 392

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SWN +IAGYG HG G+EA  LF +M   G  P+ VTF+ +LSACS SGL   G   F  
Sbjct: 393 VSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHV 452

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M   + + PR  HY CM++LL R G LDEA+  I+  P +    +W ALL ACRV  N++
Sbjct: 453 MGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNID 512

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           LGK  +  +  + PE   N+V+L NIY+++G+  EAAEV    + +G +  P CSWIE+ 
Sbjct: 513 LGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 572

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSE 637
              H F+ GDQSH Q+ EIYR++D +++ I K GY P+   +L D+ +E++++ L  HSE
Sbjct: 573 GSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSE 632

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHF 692
           KLA+A+G+++ S+   + + ++ R+C DCH  IK I++V  R I+VRDA+RFHHF
Sbjct: 633 KLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 137/531 (25%), Positives = 243/531 (45%), Gaps = 64/531 (12%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+   + AC  L      + +  + +  G + DL++   +L M+V+C  + DA  +F  M
Sbjct: 12  TFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATM 71

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC--GSRTFATMIRASAGLELISV 249
           P R+LV+ N ++AG    G Y  A    L +  +       + T   ++   A    ++ 
Sbjct: 72  PARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQ 131

Query: 250 GKQLHSCAL----------KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
           G  +H+  +          K    D V +  AL+DMY+KCGS+  A+ VFD M  +  V 
Sbjct: 132 GTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 191

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGV-KMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
           W+ +I G+ L     +A  L+  M   G+  +   + +  +R C  L  L   +Q HA L
Sbjct: 192 WSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALL 251

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
            + G   D+ A ++L+  Y+K G I+ A  +FD+M  K+ +S++AL++GY  +GR EEA 
Sbjct: 252 AKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAF 311

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACS-----RSGLSERGWEIFQSMSRDHKIKPRA--MH 471
            +F++M    + P+  T ++++ ACS     + G    G  I + ++ +  I      M+
Sbjct: 312 LVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMY 371

Query: 472 YAC-----------------------MIELLGREGLLDEAFAL---IRGAPFKTTKNMWA 505
             C                       MI   G  GL  EA AL   +    F      + 
Sbjct: 372 AKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFI 431

Query: 506 ALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
            LL+AC  +G +  GK     +   YG+ P ++ +Y+ ++++ +  G L EA E I+++ 
Sbjct: 432 CLLSACSHSGLVIEGKHWFHVMGHGYGLTP-RMEHYICMVDLLSRGGFLDEAYEFIQSMP 490

Query: 563 -RKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
            R  +R+     W+ +     V+        +  ++ +KV RM+ E+   G
Sbjct: 491 LRADVRV-----WVALLGACRVY--------KNIDLGKKVSRMIQELGPEG 528



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 2/130 (1%)

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           V  +++TF   ++ C+ LA     +  H   +  G   D+  ++AL+D Y K   + DA 
Sbjct: 6   VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVE--LFEQMLLNGMRPNHVTFLAVLSACSR 445
           H+F  M  +++++WNA++AGY +HG    AV   L  QM ++ +RPN  T +A+L   ++
Sbjct: 66  HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125

Query: 446 SGLSERGWEI 455
            G   +G  +
Sbjct: 126 QGALAQGTSV 135


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/618 (35%), Positives = 359/618 (58%), Gaps = 18/618 (2%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   +K +      +   V N R +EA ELF+        +  + +++AL++  +    I
Sbjct: 224 DLAPEKDAVSWNGMLAAYVRNGRIQEARELFD-----SRTEWDAISWNALMAGYVQRSQI 278

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
            E +++F+ M     + D+   N ++  + R G M +ARRLFD  P R++ +   I++G 
Sbjct: 279 EEAQKMFNKMP----QRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGY 334

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
             +G   EA  +F    +   D  + ++  M+ A     ++   K+L           NV
Sbjct: 335 AQNGMLEEAKRVF----DAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMP----CRNV 386

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
                ++  Y++ G +++A+ +F  M +K  V W  ++A Y+  G+SEE L L+ EM   
Sbjct: 387 ASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRC 446

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           G  ++   F+ ++  C  +A+LE   Q H+ L++ G+G+     +AL+  Y K G +E+A
Sbjct: 447 GEWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEA 506

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
              F++M  ++V+SWN +IAGY  HG G+EA+E+F+ M     +P+ +T + VL+ACS S
Sbjct: 507 HSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHS 566

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           GL E+G   F SM RD  +  +  HY CMI+LLGR G LDEA  L++  PF+    MW A
Sbjct: 567 GLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGA 626

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           LL A R++ N ELG+ AAEK++ +EPE    YV+L NIY SSGK ++  ++   +  +G+
Sbjct: 627 LLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMHERGV 686

Query: 567 RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE 626
           + +P  SWIEV+ + H F  GD  H + ++IY  ++ + + + K GYV     +L DV+E
Sbjct: 687 KKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATDMVLHDVEE 746

Query: 627 QE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
           +E + +L YHSEKLAVA+G++      P++++++ R+C DCH A K I+ + GR I++RD
Sbjct: 747 EEKEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLIILRD 806

Query: 686 ASRFHHFKDGMCSCGDYW 703
           ++RFHHF+DG CSCGDYW
Sbjct: 807 SNRFHHFRDGSCSCGDYW 824



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 124/481 (25%), Positives = 210/481 (43%), Gaps = 87/481 (18%)

Query: 162 EPDLYM--RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           +PD+ +  RNR +  H+R G + DA RLF  MP R+  + N ++AG   +G   +A   F
Sbjct: 102 KPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFF 161

Query: 220 LD---------------------------LWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
                                        L++E     S ++  MI + A   L+S+ + 
Sbjct: 162 RSIPRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARH 221

Query: 253 LHSCAL------------------KMGFGDNVFVS---------CALIDMYSKCGSIEDA 285
               A                   ++     +F S          AL+  Y +   IE+A
Sbjct: 222 YFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQRSQIEEA 281

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
           Q +F++M ++  V WNT+++GYA  G   EA  L+    D     D FT++ I+    + 
Sbjct: 282 QKMFNKMPQRDVVSWNTMVSGYARRGDMAEARRLF----DVAPIRDVFTWTAIVSGYAQN 337

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
             LE AK+    +       + V+ +A++  Y +   +E+A+ +FD M C+NV SWN ++
Sbjct: 338 GMLEEAKRVFDAMPDK----NAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTML 393

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRP--NHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
            GY   G  +EA  +F      GM P  + V++ A+L+A S+ G SE   ++F+ M R  
Sbjct: 394 TGYAQAGMLDEARAIF------GMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCG 447

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWAALLTACRVNGNLELG 520
           +   R+  +AC++        L+    L   +  A +     +  ALL      G++E  
Sbjct: 448 EWVNRSA-FACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEA 506

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR--------MLPAC 572
             A E+   ME   + ++  ++  Y   G  KEA EV  T+R+   +        +L AC
Sbjct: 507 HSAFEE---MEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAAC 563

Query: 573 S 573
           S
Sbjct: 564 S 564


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/611 (36%), Positives = 366/611 (59%), Gaps = 9/611 (1%)

Query: 99  SQIEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKR-VFSYM 156
           S I     N     AL L+ ++L F  G    + TY  ++ AC G   +RE+ R V + +
Sbjct: 94  SMIRGYACNNSPSRALFLYLKMLHF--GQKPDNFTYPFVLKAC-GDLLLREMGRKVHALV 150

Query: 157 LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF 216
           +  G E D+Y+ N +L M+ + G +  AR +FD M  R+L S N +++G + +G+   AF
Sbjct: 151 VVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAF 210

Query: 217 LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV---FVSCALI 273
            +F D+  +       T   ++ A   +  + VGK++H   ++ G    V   F+  ++I
Sbjct: 211 EVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSII 270

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           DMY  C S+  A+ +F+ +  K  V WN++I+GY   G + +AL+L+  M   G   D  
Sbjct: 271 DMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEV 330

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           T   ++  C ++++L       + +V+ G+ +++V  +AL+  Y+  G +  A  VFD+M
Sbjct: 331 TVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEM 390

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             KN+ +   ++ G+G HGRG EA+ +F +ML  G+ P+   F AVLSACS SGL + G 
Sbjct: 391 PEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGK 450

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           EIF  M+RD+ ++PR  HY+C+++LLGR G LDEA+A+I     K  +++W ALL+ACR+
Sbjct: 451 EIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRL 510

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACS 573
           + N++L   +A+KL+ + P+ +S YV L NIY +  + ++   V   + ++ LR  P+ S
Sbjct: 511 HRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYS 570

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVL 632
           ++E+ K  H F  GD SH Q+ +IY K+  +  ++ K GY P+   +L DV+E+ ++++L
Sbjct: 571 FVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKML 630

Query: 633 SYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHF 692
             HSE+LA+AF LINT   T ++I ++ R+C DCH  IK+I+ +T REI++RD  RFHHF
Sbjct: 631 WDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHF 690

Query: 693 KDGMCSCGDYW 703
           +DG+CSCG YW
Sbjct: 691 RDGLCSCGGYW 701



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 123/229 (53%), Gaps = 1/229 (0%)

Query: 235 ATMIRASAGLELISVGKQLHSCALKMG-FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
            T++++    + ++   QLH+     G    N +++  L   Y+ CG +  AQ +FD++ 
Sbjct: 26  GTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIV 85

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
            K +  WN++I GYA +     AL LY +M   G K D+FT+  +++ C  L   E  ++
Sbjct: 86  LKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRK 145

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            HA +V  G   D+   ++++  Y K+G +E AR VFD+ML +++ SWN +++G+  +G 
Sbjct: 146 VHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGE 205

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
              A E+F  M  +G   +  T LA+LSAC      + G EI   + R+
Sbjct: 206 ARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRN 254



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 1/126 (0%)

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHG-FGLDIVANSALVDFYSKWGRIEDARHV 389
           D      +++  T   SL  A Q HA +   G    +    + L   Y+  G +  A+H+
Sbjct: 21  DSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHI 80

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449
           FD+++ KN   WN++I GY  +     A+ L+ +ML  G +P++ T+  VL AC    L 
Sbjct: 81  FDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLR 140

Query: 450 ERGWEI 455
           E G ++
Sbjct: 141 EMGRKV 146


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/565 (38%), Positives = 336/565 (59%), Gaps = 1/565 (0%)

Query: 140 CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSC 199
           C   +S+   K      +  G   D    N ++ ++ +CG    AR +FD M  R++VS 
Sbjct: 67  CAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSW 126

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK 259
           N +IAG   SG+ ++A  LF  +  E +     T ++ I A A    I+  KQLH+ ALK
Sbjct: 127 NTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTIALK 186

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDL 319
           +    N FV  A++D+Y+KC  I+DA  VF++M E+T V W+++ AGY  +G  EEAL L
Sbjct: 187 LALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHL 246

Query: 320 YYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379
           +   +  GV++  FT S I+  C  LA      Q HA +++ GF  +    ++LVD Y++
Sbjct: 247 FRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYAR 306

Query: 380 WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
            G+IE A  +F  M  KNV+ WNA+IA +  H    EA+ LFE+M   G+ PN VT+L+V
Sbjct: 307 CGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSV 366

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499
           LS CS +GL E+G   F  +  D  ++P  +HY+CM+++LGR G  DEA+ L+   PF+ 
Sbjct: 367 LSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEP 426

Query: 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
           T +MW +LL +CR   N+ L + AAE+L+ +EP+   N+V+L N+Y +SG  +      +
Sbjct: 427 TASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWENVLMARK 486

Query: 560 TLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKT 619
            L+  G +     SWIE K + HVF+ G++ H +  +IY K++ +  E+ K       + 
Sbjct: 487 YLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEMRKFARRTSIEC 546

Query: 620 LLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTG 678
            L DV  EQ++ +L +HSEKLA++FGLI+     P+ I ++ RIC DCH+ +K+ A +T 
Sbjct: 547 DLHDVHAEQKEELLKHHSEKLALSFGLISLPSNIPIIIHKNLRICGDCHSFMKIAAHITE 606

Query: 679 REIVVRDASRFHHFKDGMCSCGDYW 703
           R ++VRD +RFHHFKDG CSCGD+W
Sbjct: 607 RLVIVRDTNRFHHFKDGSCSCGDFW 631



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 176/348 (50%), Gaps = 31/348 (8%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +AL+LF  +  EG   +   T  + I AC    +I E K++ +  L    + + ++   +
Sbjct: 141 QALKLFSRMHREGT-HMSEFTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVGTAI 199

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L ++ +C M+ DA  +F++MPER LV+ + + AG + +G + EA  LF     E  +   
Sbjct: 200 LDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTE 259

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T + ++ A A L L   G QLH+  LK GF  N FV+ +L+D+Y++CG IE A  +F  
Sbjct: 260 FTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAY 319

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M  K  V WN +IA ++ H +S EA+ L+ +M+  G+  +  T+  ++ +C+        
Sbjct: 320 MEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCS-------- 371

Query: 352 KQAHAGLV---RHGFGL---------DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
              HAGLV   RH F L         +++  S +VD   + G+ ++A  + +KM  +   
Sbjct: 372 ---HAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTA 428

Query: 400 S-WNALIAGYGNHGRGE----EAVELFEQMLLNGMRPNHVTFLAVLSA 442
           S W +L+    N+         A +LF+    NG   NHV    V +A
Sbjct: 429 SMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNG--GNHVLLSNVYAA 474



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 62/115 (53%)

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
           +D    S  +++C +  SL   K  H   +  G   D +  + L++ Y+K GR + AR V
Sbjct: 55  IDVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLV 114

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           FD M  ++++SWN +IAGY + G   +A++LF +M   G   +  T  + + AC+
Sbjct: 115 FDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACA 169


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/571 (37%), Positives = 331/571 (57%), Gaps = 36/571 (6%)

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N ++ +H+ CG +  A   F+ + ER++VS N +IAG    G   EA   F  + ++ S 
Sbjct: 177 NAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSL 236

Query: 229 CGSR-TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE---- 283
              R + A+ + A A LE +S GKQ+H   ++  F  +  V  ALI MY+K G +E    
Sbjct: 237 KPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARR 296

Query: 284 -----------------------------DAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
                                         A+ +F+ + +   V W  +I GY  +G + 
Sbjct: 297 IIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNN 356

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           +A++++  M   G + + FT + ++   + + SL H KQ HA  +R G  L     +AL 
Sbjct: 357 DAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALT 416

Query: 375 DFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
             Y+K G I  AR VF+ +   ++ +SW ++I     HG GEEA+ELFEQML  G++P+H
Sbjct: 417 TMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDH 476

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
           +T++ VLSAC+  GL E+G   F  M   HKI P   HYACM++L GR GLL EA+  + 
Sbjct: 477 ITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVE 536

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
             P +     W +LL++C+V  N++L K AAE+L  +EP     Y  L N+Y+S GK  +
Sbjct: 537 NMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDD 596

Query: 554 AAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGY 613
           AA++ + ++ +G++     SW++++ + HVF   D  H Q  EIY+ +D++  EI K G+
Sbjct: 597 AAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGF 656

Query: 614 VPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKL 672
            P+ +++L D++ E + ++L YHSEKLA+AFG+I+T + T L+I+++ R+C DCHNAIK 
Sbjct: 657 APDTESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAIKF 716

Query: 673 IAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I+ +  REI+VRDA+RFHHFKDG CSC DYW
Sbjct: 717 ISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 124/495 (25%), Positives = 214/495 (43%), Gaps = 103/495 (20%)

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N +L  + + G +  A ++FD +P R+ VS   II G    G + +A  +F+D+ ++   
Sbjct: 45  NTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVL 104

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               T   ++ + A      +GK++HS  +K+G    V V+ +L++MY+K G ++ A+ V
Sbjct: 105 PTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVV 164

Query: 289 FDEM-------------------------------SEKTTVGWNTIIAGYALHGYSEEAL 317
           FD M                               SE+  V WN++IAG   HG+  EAL
Sbjct: 165 FDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEAL 224

Query: 318 DLYYE-MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF------------- 363
             +   ++D+ +K D F+ +  +  C  L  L   KQ H  +VR  F             
Sbjct: 225 QFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISM 284

Query: 364 --------------------GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
                                LD++A +AL++ Y K G I  AR +F+ +   +V++W A
Sbjct: 285 YAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTA 344

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD- 462
           +I GY  +G   +A+E+F+ M+  G RPN  T  A+LSA S       G +I  S  R  
Sbjct: 345 MIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSG 404

Query: 463 HKIKPR------------------------------AMHYACMIELLGREGLLDEAFALI 492
             + P                                + +  MI  L + GL +EA  L 
Sbjct: 405 EALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELF 464

Query: 493 R---GAPFKTTKNMWAALLTACRVNGNLELGKF---AAEKLYGMEPEKLSNYVVLLNIYN 546
                   K     +  +L+AC   G +E G+      + ++ ++P  LS+Y  +++++ 
Sbjct: 465 EQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPT-LSHYACMVDLFG 523

Query: 547 SSGKLKEAAEVIRTL 561
            +G L+EA + +  +
Sbjct: 524 RAGLLQEAYKFVENM 538



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 176/386 (45%), Gaps = 64/386 (16%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
            EAL+ F  +  +        +  + +SAC  L  +   K++  Y++ T F+    + N 
Sbjct: 221 NEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNA 280

Query: 171 VLLM---------------------------------HVRCGMMIDARRLFDEMPERNLV 197
           ++ M                                 +V+ G +  AR++F+ + + ++V
Sbjct: 281 LISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVV 340

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257
           +   +I G + +G   +A  +F  +  E     S T A M+ AS+ +  ++ GKQ+H+ A
Sbjct: 341 AWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASA 400

Query: 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE-KTTVGWNTIIAGYALHGYSEEA 316
           ++ G   +  V  AL  MY+K GSI  A+ VF+ + + + TV W ++I   A HG  EEA
Sbjct: 401 IRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEA 460

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG-LDIVAN----- 370
           ++L+ +M   G+K DH T+  ++  CT           H GLV  G    D++ N     
Sbjct: 461 IELFEQMLTLGIKPDHITYVGVLSACT-----------HGGLVEQGRSYFDLMKNVHKID 509

Query: 371 ------SALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
                 + +VD + + G +++A    + M +  +VI+W +L++    +   + A    E+
Sbjct: 510 PTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAER 569

Query: 424 MLLNGMRPN----HVTFLAVLSACSR 445
           +LL  + PN    +     V S+C +
Sbjct: 570 LLL--IEPNNSGAYSALANVYSSCGK 593



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 141/290 (48%), Gaps = 8/290 (2%)

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           Y+K G +E A  VFD +  + +V W TII GY   G  E+A+ ++ +M    V    FT 
Sbjct: 51  YAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTL 110

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
           + ++  C    S    K+ H+ +V+ G    +   ++L++ Y+K G ++ A+ VFD+M  
Sbjct: 111 TNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKL 170

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           +N  SWNA+I+ + N GR + A+  FE +       + V++ ++++ C++ G      + 
Sbjct: 171 RNTSSWNAMISLHMNCGRVDLALAQFELL----SERDIVSWNSMIAGCNQHGFDNEALQF 226

Query: 456 FQSMSRDHKIKPRAMHYACMIEL---LGREGLLDEAFALIRGAPFKTTKNMWAALLTACR 512
           F S+ +D  +KP     A  +     L +     +    I    F  +  +  AL++   
Sbjct: 227 FSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYA 286

Query: 513 VNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
            +G +E+ +   E+  G+    +  +  LLN Y   G +  A ++  +L+
Sbjct: 287 KSGGVEIARRIIEQ-SGISDLDVIAFTALLNGYVKLGDITPARQIFNSLK 335



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 59/110 (53%), Gaps = 5/110 (4%)

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           +V+ G    +   + L++ Y+K G   DA  +F++M  K   SWN +++GY   G+ E+A
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
            ++F+ + +     + V++  ++   ++ G  E   +IF  M +D K+ P
Sbjct: 61  HQVFDLIPVR----DSVSWTTIIVGYNQMGRFEDAIKIFVDMVKD-KVLP 105


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/627 (35%), Positives = 371/627 (59%), Gaps = 12/627 (1%)

Query: 84  SLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGL 143
           +L D  M +      + I    LN +  EALE+F+ + F+    + S T  +L+  C+ L
Sbjct: 195 NLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKS-VSMDSVTISSLLPICVQL 253

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
             I     +  Y +  G E DL++ N ++ M+ + G +  A  +F++M  R++VS N ++
Sbjct: 254 DDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLL 313

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGS----RTFATMIRASAGLELISVGKQLHS-CAL 258
           A    +   + A    L ++ +    G      T  ++   +A L      + +H     
Sbjct: 314 AAFEQNKKPVIA----LGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTR 369

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
           +  F  ++ +  A+IDMY+K G I+ A+ VF+ +  K  + WN++I GY+ +G + EA+D
Sbjct: 370 RCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAID 429

Query: 319 LYYEMRD-SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
           +Y  MR  SG   +  T+  I+   ++L +L+   +AH  L+++    DI  ++ LVD Y
Sbjct: 430 VYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMY 489

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
            K G++ DA  +F ++  ++ +SWNA+I+ +G HG G +AV+LF++M   G++P+H+TF+
Sbjct: 490 GKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFV 549

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
           ++LSACS SGL + G   FQ M   + I+P   HY CM++L GR G L++AF  ++  P 
Sbjct: 550 SLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPV 609

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
           +   ++W ALL ACR++ N+EL +  ++ L  +E E +  YV+L NIY   G  +   EV
Sbjct: 610 RPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEV 669

Query: 558 IRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEE 617
               R +GL+  P  S IEV K+  VF +G+Q+H + +EIY ++  +  ++   GYVP+ 
Sbjct: 670 RSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDY 729

Query: 618 KTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMV 676
             +L DV D++++ +L+ HSE+LA+AFG+I+T   T LQI ++ R+C DCHNA K I+ +
Sbjct: 730 NFVLQDVEDDEKENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKI 789

Query: 677 TGREIVVRDASRFHHFKDGMCSCGDYW 703
           T REI+VRD++RFHHFKDG+CSCGDYW
Sbjct: 790 TEREIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 208/410 (50%), Gaps = 11/410 (2%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           K++ + ++ +G    +++  +++  +   G +  AR  FD++  +++ + N +I+     
Sbjct: 60  KQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARI 119

Query: 210 GDYLEAFLLFLD-LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
           G +  A   F + L   F      TF  +IRA   L+    G+++H   LK+GF  +V++
Sbjct: 120 GHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLD---DGRKVHCLVLKLGFECDVYI 176

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
           + + I  YS+ G +  A  +FD M  +    WN +I+G+ L+G   EAL+++ EMR   V
Sbjct: 177 AASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSV 236

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
            MD  T S ++ IC +L  +      H   ++ G   D+   +AL++ Y+K+G +  A  
Sbjct: 237 SMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAET 296

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG- 447
           +F++M  ++++SWN+L+A +  + +   A+ ++ +M   G+ P+ +T +++ S  +  G 
Sbjct: 297 IFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGN 356

Query: 448 -LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
            LS R    F +  R   +   A+  A +I++  + G +D A  +  G P K   + W +
Sbjct: 357 FLSSRSIHGFVT-RRCWFLHDIALGNA-IIDMYAKLGFIDSARKVFEGLPVKDVIS-WNS 413

Query: 507 LLTACRVNG--NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
           L+T    NG  N  +  +++ + Y         +V +L  ++  G LK+ 
Sbjct: 414 LITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQG 463



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 61/198 (30%), Positives = 118/198 (59%), Gaps = 4/198 (2%)

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           + + KQLH+  +  G   ++F+S  LI+ Y+  G I  A+  FD++  K    WN++I+ 
Sbjct: 56  VHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISA 115

Query: 307 YALHGYSEEALDLYYE-MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
           YA  G+   A+D + E +  S ++ DH+TF  +IR C    +L+  ++ H  +++ GF  
Sbjct: 116 YARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRKVHCLVLKLGFEC 172

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           D+   ++ + FYS++G +  A ++FD M+ +++ +WNA+I+G+  +G+  EA+E+F++M 
Sbjct: 173 DVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMR 232

Query: 426 LNGMRPNHVTFLAVLSAC 443
              +  + VT  ++L  C
Sbjct: 233 FKSVSMDSVTISSLLPIC 250



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 59/110 (53%), Gaps = 4/110 (3%)

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           F+ I   CT++     AKQ HA LV  G    I  ++ L++ Y+  G I  AR  FD++ 
Sbjct: 46  FNRIFLYCTKV---HLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQ 102

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSAC 443
            K+V +WN++I+ Y   G    AV+ F + L    ++ +H TF  V+ AC
Sbjct: 103 TKDVYTWNSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC 152


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/627 (35%), Positives = 352/627 (56%), Gaps = 37/627 (5%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           +L LF  +    G    S T+ +L  +C   ++  E K++ ++ L        ++   ++
Sbjct: 111 SLHLFSQM-LHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLI 169

Query: 173 LMH-------------------------------VRCGMMIDARRLFDEMPERNLVSCNM 201
            M+                               V  G + DARRLFDE+P +++VS N 
Sbjct: 170 HMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNA 229

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           +IAG + SG + EA   F  + E        T  +++ A   L  + +GK + S     G
Sbjct: 230 MIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRG 289

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
           FG N+ +  AL+DMYSKCG I  A+ +FD M +K  + WNT+I GY      EEAL L+ 
Sbjct: 290 FGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFE 349

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN----SALVDFY 377
            M    V  +  TF  ++  C  L +L+  K  HA + ++  G   V N    ++++  Y
Sbjct: 350 VMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMY 409

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           +K G +E A  VF  M  +++ SWNA+I+G   +G  E A+ LFE+M+  G +P+ +TF+
Sbjct: 410 AKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFV 469

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
            VLSAC+++G  E G   F SM++D+ I P+  HY CMI+LL R G  DEA  L+     
Sbjct: 470 GVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEM 529

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
           +    +W +LL ACR++G +E G++ AE+L+ +EPE    YV+L NIY  +G+  + A++
Sbjct: 530 EPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKI 589

Query: 558 IRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEE 617
              L  KG++ +P C+ IE+    H FL GD+ H Q++ I+R +D +   + + G+VP+ 
Sbjct: 590 RTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDT 649

Query: 618 KTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMV 676
             +L D+DE+ ++  L+ HSEKLA+AFGLI+T   + ++IV++ R+C +CH+A KLI+ +
Sbjct: 650 SEVLYDMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKI 709

Query: 677 TGREIVVRDASRFHHFKDGMCSCGDYW 703
             REI+ RD +RFHHFKDG CSC D W
Sbjct: 710 FNREIIARDRNRFHHFKDGFCSCNDRW 736



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 173/334 (51%), Gaps = 11/334 (3%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I   V + R+ EAL  F  ++ E       ST  +++SAC  LRS+   K + S++  
Sbjct: 229 AMIAGYVQSGRFEEALACFTRMQ-EADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRD 287

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF  +L + N ++ M+ +CG +  AR+LFD M +++++  N +I G      Y EA +L
Sbjct: 288 RGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVL 347

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK----MGFGDNVFVSCALID 274
           F  +  E       TF  ++ A A L  + +GK +H+   K     G  +NV +  ++I 
Sbjct: 348 FEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIV 407

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MY+KCG +E A+ VF  M  ++   WN +I+G A++G++E AL L+ EM + G + D  T
Sbjct: 408 MYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDIT 467

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           F  ++  CT+   +E   +  + + + +G    +     ++D  ++ G+ ++A+ +   M
Sbjct: 468 FVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNM 527

Query: 394 -LCKNVISWNALIAGYGNHGR---GEEAVE-LFE 422
            +  +   W +L+     HG+   GE   E LFE
Sbjct: 528 EMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFE 561



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 101/228 (44%), Gaps = 35/228 (15%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDM--YSKCGSIEDAQGVFDEMSEK--TTVGWNTIIAG 306
           KQ+HS  +K G  + +F    LI+    S    +  A  +F  +  +      WNT+I  
Sbjct: 42  KQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRA 101

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           ++L      +L L+ +M  SG+  +  TF  + + C +  +   AKQ HA  ++    L 
Sbjct: 102 HSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLH 161

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL---------------------- 404
              +++L+  YS+ G +  AR VFDK   ++ +S+ AL                      
Sbjct: 162 PHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPA 221

Query: 405 ---------IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
                    IAGY   GR EEA+  F +M    + PN  T ++VLSAC
Sbjct: 222 KDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSAC 269



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 52/223 (23%), Positives = 102/223 (45%), Gaps = 24/223 (10%)

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF--YSKWGRIEDARHVFDKMLCK--N 397
           C  + SL   KQ H+ +++ G    + A S L++F   S    +  A  +F  +  +  N
Sbjct: 35  CPDIPSL---KQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPN 91

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           +  WN LI  +        ++ LF QML +G+ PN  TF ++  +C++S  +    ++  
Sbjct: 92  IFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQL-- 149

Query: 458 SMSRDHKIKPRAMH-----YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACR 512
                H +K  A+H     +  +I +  + G L  A  +   +  +   + + AL+T   
Sbjct: 150 ---HAHALK-LALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVS-FTALITGYV 204

Query: 513 VNGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEA 554
             G+++     A +L+   P K + ++  ++  Y  SG+ +EA
Sbjct: 205 SEGHVD----DARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEA 243


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/612 (36%), Positives = 354/612 (57%), Gaps = 38/612 (6%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S ++  L+ +C   ++  E +++ + +L  G   D Y+   ++ M+ R G + DAR++FD
Sbjct: 64  SYSFPFLLKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFD 123

Query: 190 -------------------------------EMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
                                          E+ ER++VS N +I G +++G Y EA  L
Sbjct: 124 ASSHRDVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALEL 183

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM----GFGDNVFVSCALID 274
           F ++          T  +++ A A    I +G+Q+HS         GF  ++ +  ALID
Sbjct: 184 FKEMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALID 243

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           +YSKCG +E A G+F+ +S K  V WNT+I GY      +EAL L+ EM  SG   +  T
Sbjct: 244 LYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVT 303

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRH--GFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
              ++  C  L +++  +  H  + +   G   +    ++L+D Y+K G IE A  VF+ 
Sbjct: 304 LLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNS 363

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           ML +++ SWNA+I G+  HGR   A +LF +M  N + P+ +TF+ +LSACS SGL + G
Sbjct: 364 MLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLG 423

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACR 512
            +IF+SM++D+ + P+  HY CMI+LLG  GL  EA  +I   P +    +W +LL AC+
Sbjct: 424 RQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACK 483

Query: 513 VNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPAC 572
            +GNLEL +  A+KL  +EPE   +YV+L NIY ++G+ ++ A V   L  KG++ +P C
Sbjct: 484 KHGNLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGC 543

Query: 573 SWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRV 631
           S IEV    H F+ GD+ H + +EIY  ++ M +++ + G+ P+   +L +++E+ ++  
Sbjct: 544 SSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGA 603

Query: 632 LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHH 691
           L +HSEKLA+AFGLI+T   T L IV++ R+C +CH A KLI+ +  REIV RD +RFHH
Sbjct: 604 LRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHH 663

Query: 692 FKDGMCSCGDYW 703
           F+DG+CSC DYW
Sbjct: 664 FRDGVCSCCDYW 675



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 164/337 (48%), Gaps = 12/337 (3%)

Query: 99  SQIEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           + I   V N RY EALELF E++      D G  T  +++SAC    SI   ++V S++ 
Sbjct: 166 AMITGYVENGRYEEALELFKEMMRTNVRPDEG--TLVSVVSACAQSGSIELGRQVHSWVD 223

Query: 158 ST----GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
                 GF   L + N ++ ++ +CG +  A  LF+ +  +++VS N +I G   +  Y 
Sbjct: 224 DDDDDHGFSSSLKIVNALIDLYSKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYK 283

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK--MGFGDNVFVSCA 271
           EA LLF ++          T  +++ A A L  I +G+ +H    K   G  +   +  +
Sbjct: 284 EALLLFQEMLRSGECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTS 343

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
           LIDMY+KCG IE A  VF+ M  ++   WN +I G+A+HG +  A DL+  MR + V+ D
Sbjct: 344 LIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPD 403

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVF 390
             TF  ++  C+    L+  +Q    + + +     +     ++D     G  ++A  + 
Sbjct: 404 DITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMI 463

Query: 391 DKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
             M +  + + W +L+     HG  E A E F Q L+
Sbjct: 464 HTMPMEPDGVIWCSLLKACKKHGNLELA-ESFAQKLI 499



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/354 (25%), Positives = 162/354 (45%), Gaps = 73/354 (20%)

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A  VF+ + E   + WNT++ G+A       AL++Y  M   G   + ++F  +++ C +
Sbjct: 17  AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA------------------ 386
             + E  +Q HA +++ G GLD   +++L+  Y++ G +EDA                  
Sbjct: 77  SKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTAL 136

Query: 387 -------------RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
                        R VFD++  ++V+SWNA+I GY  +GR EEA+ELF++M+   +RP+ 
Sbjct: 137 ITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDE 196

Query: 434 VTFLAVLSACSRSGLSERGWEIFQ---SMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
            T ++V+SAC++SG  E G ++         DH           +I+L  + G ++ AF 
Sbjct: 197 GTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFG 256

Query: 491 LIRGAPFK------------TTKNMWA----------------------ALLTACRVNGN 516
           L  G   K            T  N++                       ++L AC   G 
Sbjct: 257 LFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGA 316

Query: 517 LELGK----FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           +++G+    +  +KL G+  E  S    L+++Y   G ++ A +V  ++  + L
Sbjct: 317 IDIGRWIHVYIDKKLKGVTNET-SLRTSLIDMYAKCGDIEAAHQVFNSMLYRSL 369


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/621 (37%), Positives = 356/621 (57%), Gaps = 33/621 (5%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N   +EA E+F+ +  +      S +++ +++A +    I + +R+F     +  + +L 
Sbjct: 74  NGYVKEAKEIFDEMPCKN-----SISWNGMLAAYVQNGRIEDARRLFE----SKADWELI 124

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD----- 221
             N ++  +V+   ++DAR +FD MPER+ VS N +I+G   +G+ LEA  LF +     
Sbjct: 125 SWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRD 184

Query: 222 --LWEEFS---------DCGSRTFATMI-RASAGLELISVG----KQLHSCA--LKMGFG 263
              W             D   R F  M  + S     I  G    K++       +    
Sbjct: 185 VFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPC 244

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
            NV     +I  Y++ G I  A+  FD M ++ ++ W  IIAGYA  GY EEAL L+ EM
Sbjct: 245 QNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEM 304

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
           +  G +++  TF+  +  C  +A+LE  KQ H  +V+ G        +AL+  Y K G I
Sbjct: 305 KRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNI 364

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           +DA  VF+ +  K V+SWN +IAGY  HG G+EA+ LFE M   G+ P+ VT + VLSAC
Sbjct: 365 DDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSAC 424

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S +GL ++G E F SM++D+ I   + HY CMI+LLGR G LD+A  L++  PF+     
Sbjct: 425 SHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAAT 484

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           W ALL A R++GN ELG+ AA+ ++ MEP+    YV+L N+Y +SG+  +   +   +R 
Sbjct: 485 WGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRD 544

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
           +G++ +P  SW+EV+ + H F  GD  H +   IY  ++ + L++ K GYV   K +L D
Sbjct: 545 RGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHD 604

Query: 624 VDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           V+E+E+  +L YHSEKLAVAFG++      P++++++ R+C DCHNA+K I+ + GR I+
Sbjct: 605 VEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLII 664

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           +RD+ RFHHF  G CSCGDYW
Sbjct: 665 LRDSHRFHHFNGGQCSCGDYW 685



 Score =  120 bits (300), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 204/433 (47%), Gaps = 62/433 (14%)

Query: 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL 196
           +  C+  R++R  + +F  M     E D+   N +L  + + G + +A+ +FDEMP +N 
Sbjct: 37  LRGCVRYRNLRAARLLFDQMP----ERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNS 92

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256
           +S N ++A  + +G   +A  LF                    + A  ELIS      +C
Sbjct: 93  ISWNGMLAAYVQNGRIEDARRLF-------------------ESKADWELIS-----WNC 128

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
                          ++  Y K   + DA+G+FD M E+  V WNT+I+GYA +G   EA
Sbjct: 129 ---------------MMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEA 173

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
             L+ E   S V+ D FT++ ++    +   L+ A++   G+       + V+ +A++  
Sbjct: 174 QRLFEE---SPVR-DVFTWTAMVSGYVQNGMLDEARRVFDGMPEK----NSVSWNAIIAG 225

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           Y +  R++ AR +F+ M C+NV SWN +I GY  +G   +A   F++M     + + +++
Sbjct: 226 YVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMP----QRDSISW 281

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM---IELLGREGLLDEAFALIR 493
            A+++  ++SG  E    +F  M RD +   R+   + +    E+   E L  +    + 
Sbjct: 282 AAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALE-LGKQVHGRVV 340

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
            A  ++   +  ALL      GN++      E   G+E +++ ++  ++  Y   G  KE
Sbjct: 341 KAGLESGCYVGNALLVMYCKCGNIDDAYIVFE---GIEEKEVVSWNTMIAGYARHGFGKE 397

Query: 554 AAEVIRTLRRKGL 566
           A  +  ++++ G+
Sbjct: 398 ALMLFESMKKTGI 410



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/314 (23%), Positives = 152/314 (48%), Gaps = 34/314 (10%)

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           ++  A+ +FD+M E+  V WN +++GYA +GY +EA +++ EM       +  +++ ++ 
Sbjct: 45  NLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLA 100

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
              +   +E A++    L       ++++ + ++  Y K  R+ DAR +FD+M  ++ +S
Sbjct: 101 AYVQNGRIEDARR----LFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVS 156

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           WN +I+GY  +G   EA  LFE+  +  +     T+ A++S   ++G+ +    +F  M 
Sbjct: 157 WNTMISGYAQNGELLEAQRLFEESPVRDV----FTWTAMVSGYVQNGMLDEARRVFDGMP 212

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
             + +      +  +I    +   +D+A  L    P +   + W  ++T    NG++   
Sbjct: 213 EKNSVS-----WNAIIAGYVQCKRMDQARELFEAMPCQNVSS-WNTMITGYAQNGDIA-- 264

Query: 521 KFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM--------LPA 571
              A   +   P++ S ++  ++  Y  SG  +EA  +   ++R G R+        L  
Sbjct: 265 --QARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLST 322

Query: 572 CSWI---EVKKQPH 582
           C+ I   E+ KQ H
Sbjct: 323 CAEIAALELGKQVH 336


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 246/654 (37%), Positives = 371/654 (56%), Gaps = 29/654 (4%)

Query: 66  LKPRPKPNKIYTEE--LKESSLPDT----QMKKPSAGICSQIEKLVLNKRYREALELFEI 119
           +K   K +KI+       E+  PDT     +    A     +  +VL KR RE       
Sbjct: 81  VKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMREL------ 134

Query: 120 LEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG 179
                GF+V   T   LI+AC     +  +K++  + +S GF+    + N  +  + + G
Sbjct: 135 -----GFEVDGFTLSGLIAACCD--RVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGG 187

Query: 180 MMIDARRLFDEMPE-RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMI 238
           ++ +A  +F  M   R+ VS N +I       +  +A  L+ ++  +       T A+++
Sbjct: 188 LLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVL 247

Query: 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS---IEDAQGVFDEMSEK 295
            A   L+ +  G+Q H   +K GF  N  V   LID YSKCG    + D++ VF E+   
Sbjct: 248 NALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSP 307

Query: 296 TTVGWNTIIAGYALHG-YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
             V WNT+I+GY+++  +SEEA+  + +M+  G + D  +F  +   C+ L+S    KQ 
Sbjct: 308 DLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQI 367

Query: 355 HAGLVRHGFGLD-IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
           H   ++     + I  N+AL+  Y K G + DAR VFD+M   N +S+N +I GY  HG 
Sbjct: 368 HGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGH 427

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
           G EA+ L+++ML +G+ PN++TF+A+LSAC+  G  + G + F +M    KI+P A HY+
Sbjct: 428 GTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYS 487

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533
           CMI+LLGR G L+EA   I   P+K     WAALL ACR + N+ L + AA++L  M+P 
Sbjct: 488 CMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPL 547

Query: 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQ 593
             + YV+L N+Y  +GK +E A V +++R K +R  P CSWIEVKK+ HVF++ D SH  
Sbjct: 548 AATPYVMLANMYADAGKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPM 607

Query: 594 TKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV----LSYHSEKLAVAFGLINTS 649
            +E+   ++ MM ++ K GYV ++K  +   DE  +      L +HSEKLAVAFGL++T 
Sbjct: 608 IREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGEEEMRLGHHSEKLAVAFGLMSTR 667

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           D   + +V++ RIC DCHNAIK ++ V GREI+VRD  RFH FKDG CSCGDYW
Sbjct: 668 DGEEIVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 131/448 (29%), Positives = 216/448 (48%), Gaps = 51/448 (11%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           EP+++  N ++  + +   +  AR+LFDE P+ + VS N +I+G  D+ + + A +LF  
Sbjct: 71  EPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKR 130

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           + E   +    T + +I  +A  + + + KQLH  A+  GF     V+ A +  YSK G 
Sbjct: 131 MRELGFEVDGFTLSGLI--AACCDRVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGL 188

Query: 282 IEDAQGVFDEMSE-KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           + +A  VF  M   +  V WN++I  Y  H    +AL LY EM   G K+D FT + ++ 
Sbjct: 189 LREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLN 248

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG---RIEDARHVFDKMLCKN 397
             T L  L   +Q H  L++ GF  +    S L+DFYSK G    + D+  VF ++L  +
Sbjct: 249 ALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPD 308

Query: 398 VISWNALIAGYG-NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI- 455
           ++ WN +I+GY  N    EEAV+ F QM   G RP+  +F+ V SACS      +G +I 
Sbjct: 309 LVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIH 368

Query: 456 -----------------------FQSMSR-------DHKIKPRAMHYACMIELLGREGLL 485
                                  ++S +        D   +  A+ + CMI+   + G  
Sbjct: 369 GLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHG 428

Query: 486 DEAFALIRG------APFKTTKNMWAALLTACRVNGNLELGK---FAAEKLYGMEPEKLS 536
            EA  L +       AP   T   + A+L+AC   G ++ G+      ++ + +EPE   
Sbjct: 429 TEALRLYQRMLDSGIAPNNIT---FVAILSACAHCGKVDEGQKYFNTMKETFKIEPEA-E 484

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           +Y  ++++   +GKL+EA   I  +  K
Sbjct: 485 HYSCMIDLLGRAGKLEEAERFIDAMPYK 512


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/605 (35%), Positives = 342/605 (56%), Gaps = 4/605 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I     N    +A+ LF  ++   G    S+ Y +L+ +C+G   +   K++ S+++   
Sbjct: 160 ISAYAKNGELEKAIRLFSDMQ-ASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQ 218

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              ++ +   +  M+VRCG +  A+ +FD M  +N V+   ++ G   +     A  LF 
Sbjct: 219 LNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFA 278

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +  E  +     F+ +++   GLE   +G+Q+HS  +K+G    V V   L+D Y KCG
Sbjct: 279 RMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCG 338

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            IE A   F  +SE   V W+ +I+G++  G  E+ + ++  +R  GV ++ F ++ + +
Sbjct: 339 DIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQ 398

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C   A+L    QAH   ++ G    +   SA+V  YSK GR++ AR  F+ +   + ++
Sbjct: 399 ACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVA 458

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           W A+I+GY  HG   EA+  F +M   G+RPN VTF+AVL+ACS SGL     +   SMS
Sbjct: 459 WTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMS 518

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
           RD+ +KP   HY CMI+   R GLL EA  LI   PF+     W +LL  C  + +L+LG
Sbjct: 519 RDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLG 578

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
           K AAE L+ ++P   + Y++L N+Y++ GK +EA  V + +  + L+   +CSWI VK Q
Sbjct: 579 KIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQ 638

Query: 581 PHVFLSGDQSHVQTKEIYRKVDRMMLEI--SKHGYVPEEKTLLPDVDEQEQRVLSYHSEK 638
            H F+ GD+ H QT+ IY K++     +  S    + EE  +   +  +++++L  HSEK
Sbjct: 639 VHRFVVGDRHHPQTEAIYSKLEEFKCSVIDSPVRLLNEEDDVSCSLSARKEQLLD-HSEK 697

Query: 639 LAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCS 698
           LA+AFGLI+T D  P+ + ++ R C DCH   K ++MVTGR+IVVRD++RFHHFK G CS
Sbjct: 698 LAIAFGLISTEDNAPILVFKNLRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHFKSGKCS 757

Query: 699 CGDYW 703
           C DYW
Sbjct: 758 CNDYW 762



 Score =  199 bits (506), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 135/492 (27%), Positives = 243/492 (49%), Gaps = 17/492 (3%)

Query: 80  LKESSLPDTQMKKPSAGICSQIEKLVLNK--RYREALELFEILEFEGGFDVGSSTYDALI 137
           LK SS    + +K   G    +  + L+K  + +EA +  + ++ +    V   +Y  L 
Sbjct: 37  LKRSS-STIKTEKIQQGKLENLHLVSLSKQGKLKEAHDFLKEMD-DADVSVTPHSYQCLF 94

Query: 138 SACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLV 197
            AC  LRS+ + + +   +  T   P   + N +L M+  CG  ID +++FDEM  +NLV
Sbjct: 95  EACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLV 154

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257
           S  ++I+    +G+  +A  LF D+        S  + +++++  G   + +GKQ+HS  
Sbjct: 155 SWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHV 214

Query: 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL 317
           ++     N+ V  A+ +MY +CG +E A+ VFD M  +  V W  ++ GY      E AL
Sbjct: 215 IRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVAL 274

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
           +L+  M   GV++D F FS+++++C  L   +  +Q H+ +V+ G   ++   + LVDFY
Sbjct: 275 ELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFY 334

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
            K G IE A   F ++   N +SW+ALI+G+   GR E+ +++F  +   G+  N   + 
Sbjct: 335 VKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYT 394

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY----ACMIELLGREGLLDEAFALIR 493
           +V  AC+       G     S +    IK   + Y    + M+ +  + G LD A     
Sbjct: 395 SVFQACAAQANLNMG-----SQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFE 449

Query: 494 GAPFKTTKNMWAALLTACRVNGNL--ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
               +     W A+++    +GN    LG F   + YG+ P  ++ ++ +L   + SG +
Sbjct: 450 SID-EPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVT-FIAVLTACSHSGLV 507

Query: 552 KEAAEVIRTLRR 563
            EA + + ++ R
Sbjct: 508 AEAKQYLGSMSR 519


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/643 (35%), Positives = 370/643 (57%), Gaps = 35/643 (5%)

Query: 92  KPSAGICS---QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIRE 148
            P  G+ +    +  LV + R  EA+E+   +   G    G  T+ + + AC  L  +  
Sbjct: 231 SPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGI-TFASALPACSQLEMLSL 289

Query: 149 VKRVFSYML-STGFEPDLYMRNRVLLM---HVRCGMMIDARRLFDEMP--ERNLVSCNMI 202
            + + +Y+L  +    + ++ + ++ M   H R G+   ARR+FD +P   R L   N +
Sbjct: 290 GREMHAYVLKDSDLAANSFVASALVDMYASHERVGV---ARRVFDMVPGGHRQLGLWNAM 346

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT-FATMIRASAGLELISVGKQLHSCALKMG 261
           + G   +G   EA  LF  +  E     S T  A ++ A A  E  +  + +H   LK G
Sbjct: 347 VCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRG 406

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
             DN FV  AL+D+Y++ G +E A+ +F  +  +  V WNT+I G  + G+  +A  L  
Sbjct: 407 MADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVR 466

Query: 322 EMRDSG------------------VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           EM+  G                  V  ++ T   ++  C  LA+    K+ H   +RH  
Sbjct: 467 EMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHAL 526

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             DI   SALVD Y+K G +  +R VFD++  +NVI+WN LI  YG HG G+EA+ LF++
Sbjct: 527 DSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDR 586

Query: 424 MLL-NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           M++ N  +PN VTF+A L+ACS SG+ +RG E+F SM R+H ++P    +AC +++LGR 
Sbjct: 587 MVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRA 646

Query: 483 GLLDEAFALIRG-APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
           G LDEA+++I    P +   + W++ L ACR++ N+ LG+ AAE+L+ +EP++ S+YV+L
Sbjct: 647 GRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLL 706

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV 601
            NIY+++G  ++++EV   +R++G+   P CSWIE+    H F++G+ +H ++  ++  +
Sbjct: 707 CNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHM 766

Query: 602 DRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSH 660
           D +   +   GY P+  ++L D++E E+  +L YHSEKLA+AFGL+ T     +++ ++ 
Sbjct: 767 DALWERMRNQGYTPDTSSVLHDIEESEKAAILRYHSEKLAIAFGLLRTPPGATIRVAKNL 826

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           R+C DCH A K I+ + GREIV+RD  RFHHF DG CSCGDYW
Sbjct: 827 RVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 123/398 (30%), Positives = 194/398 (48%), Gaps = 32/398 (8%)

Query: 142 GLRSIREVKRVFSYMLST----GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLV 197
            LRS+  V+ +    L      GF P   + N +L  + RCG +  A  LF+ MP R+ V
Sbjct: 71  ALRSLIAVRSIHGAALRRDLLHGFTP--AVANALLTAYARCGDLTAALALFNAMPSRDAV 128

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL-ELISVGKQLHSC 256
           + N +IA +     +L A     D+  E     S T  +++ A + L E + +G++ H+ 
Sbjct: 129 TFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAF 188

Query: 257 ALKMGF--GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG-----WNTIIAGYAL 309
           ALK GF  GD  F   AL+ MY++ G ++DAQ +F  +    + G     WNT+++    
Sbjct: 189 ALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQ 248

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G   EA+++ Y+M   GV+ D  TF+  +  C++L  L   ++ HA +++     D+ A
Sbjct: 249 SGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDS---DLAA 305

Query: 370 N----SALVDFYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEAVELFEQ 423
           N    SALVD Y+   R+  AR VFD +    + +  WNA++ GY   G  EEA+ELF +
Sbjct: 306 NSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFAR 365

Query: 424 MLLN-GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           M    G+ P+  T   VL AC+RS  +  G E          +         +++L  R 
Sbjct: 366 MEAEAGVVPSETTIAGVLPACARSE-TFAGKEAVHGYVLKRGMADNPFVQNALMDLYARL 424

Query: 483 GLLDEA---FALIRGAPFKTTKNMWAALLTACRVNGNL 517
           G ++ A   FA I   P       W  L+T C V G++
Sbjct: 425 GDMEAARWIFAAIE--PRDVVS--WNTLITGCVVQGHI 458



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 136/269 (50%), Gaps = 13/269 (4%)

Query: 239 RASAGLELISVGKQLHSCALKMGF--GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
           +++A L  +   + +H  AL+     G    V+ AL+  Y++CG +  A  +F+ M  + 
Sbjct: 67  KSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALALFNAMPSRD 126

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA-SLEHAKQAH 355
            V +N++IA   L      ALD   +M   G  +  FT   ++  C+ LA  L   ++AH
Sbjct: 127 AVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAEDLRLGREAH 186

Query: 356 AGLVRHGF--GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN-----VISWNALIAGY 408
           A  +++GF  G +  A +AL+  Y++ G ++DA+ +F  +   +     V++WN +++  
Sbjct: 187 AFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLL 246

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
              GR  EA+E+   M+  G+RP+ +TF + L ACS+  +   G E+   + +D  +   
Sbjct: 247 VQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAAN 306

Query: 469 AMHYACMIELLG---REGLLDEAFALIRG 494
           +   + ++++     R G+    F ++ G
Sbjct: 307 SFVASALVDMYASHERVGVARRVFDMVPG 335


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/570 (37%), Positives = 348/570 (61%), Gaps = 3/570 (0%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           ++  C    ++ E K     ++    E D+ + N ++  + +CG +  AR++FD M ER+
Sbjct: 67  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 126

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG-KQLH 254
           LVS N +I     +    EA  +FL++  E       T ++++ A  G+   ++  K+LH
Sbjct: 127 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSA-CGVNCDALECKKLH 185

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
             ++K     N++V  AL+D+Y+KCG I+DA  VF+ M +K++V W++++AGY  +   E
Sbjct: 186 CLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYE 245

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EAL LY   +   ++ + FT S +I  C+ LA+L   KQ HA + + GFG ++   S+ V
Sbjct: 246 EALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAV 305

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D Y+K G + ++  +F ++  KN+  WN +I+G+  H R +E + LFE+M  +GM PN V
Sbjct: 306 DMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEV 365

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           TF ++LS C  +GL E G   F+ M   + + P  +HY+CM+++LGR GLL EA+ LI+ 
Sbjct: 366 TFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKS 425

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            PF  T ++W +LL +CRV  NLEL + AAEKL+ +EPE   N+V+L NIY ++ + +E 
Sbjct: 426 IPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEI 485

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
           A+  + LR   ++ +   SWI++K + H F  G+  H + +EI   +D ++++  K GY 
Sbjct: 486 AKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYK 545

Query: 615 PEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLI 673
           P  +  L DV+  +++ +L  HSEKLA+ FGL+   + +P++I+++ RIC DCH  +K  
Sbjct: 546 PSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAA 605

Query: 674 AMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +M T R I+VRD +RFHHF DG CSCGD+W
Sbjct: 606 SMATRRFIIVRDVNRFHHFSDGHCSCGDFW 635



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 101/222 (45%), Gaps = 3/222 (1%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           ++   K S    S +   V NK Y EAL L+   +     +    T  ++I AC  L ++
Sbjct: 221 ESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQ-RMSLEQNQFTLSSVICACSNLAAL 279

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
            E K++ + +  +GF  ++++ +  + M+ +CG + ++  +F E+ E+NL   N II+G 
Sbjct: 280 IEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGF 339

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA-LKMGFGDN 265
                  E  +LF  + ++       TF++++       L+  G++         G   N
Sbjct: 340 AKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPN 399

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAG 306
           V     ++D+  + G + +A  +   +  + T   W +++A 
Sbjct: 400 VVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLAS 441


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/603 (35%), Positives = 352/603 (58%), Gaps = 36/603 (5%)

Query: 110 YREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           + +AL LF  + E E G      T+  L++ C   R+  + +++ ++++      ++ + 
Sbjct: 257 FNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVE 316

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF--LDLWEEF 226
             ++ M+  CG +  A+ +F+ M ERN  S N +I G   +G+  EA  LF  + L    
Sbjct: 317 TELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIK 376

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            DC S   ++M+ +   L     G++LH+  ++    +   +   L+DMY+KCGS++ A 
Sbjct: 377 PDCFS--LSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAW 434

Query: 287 GVFDEM--SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
            V+D+    ++ T  WN+I+AGYA  G  +E+ + + EM +S ++ D  T   I+ +   
Sbjct: 435 KVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNL--- 491

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
                                 +V  +ALVD YSK G I  AR VFD M  KN++SWNA+
Sbjct: 492 ----------------------LVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAM 529

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I+GY  HG  +EA+ L+E+M   GM PN VTFLA+LSACS +GL E G  IF SM  D+ 
Sbjct: 530 ISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYN 589

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           I+ +A HY CM++LLGR G L++A   +   P +   + W ALL ACRV+ ++++G+ AA
Sbjct: 590 IEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAA 649

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
           ++L+ ++P+    YV++ NIY ++G+ KE  ++ + ++ KG++  P  SWIE+  +  +F
Sbjct: 650 QRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIF 709

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE----QEQRVLSYHSEKLA 640
            +G ++H +T+EIY  +  + L+    GY+P+   +L +V +    +E+  L  HSE+LA
Sbjct: 710 HAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLA 769

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           ++ GLI+    + +++ ++ RIC DCH A K I+ +TGR I+ RD +RFHHF++G CSCG
Sbjct: 770 LSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCG 829

Query: 701 DYW 703
           DYW
Sbjct: 830 DYW 832



 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 159/514 (30%), Positives = 264/514 (51%), Gaps = 38/514 (7%)

Query: 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID--- 183
           DV    Y +LI  CI   S +  K + + M+S G+ PD Y+  ++L+++ R G + D   
Sbjct: 68  DVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCY 127

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASA 242
           AR+LF+EMPERNL + N +I       DY+EA+ +F D   +   C    TFA+ +R   
Sbjct: 128 ARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIF-DRMLKIGVCPDNFTFASALRVCG 186

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
            L     GKQ+HS  +  GF  + FV  ALIDMY+KC   E    VFDEM E+  V WN+
Sbjct: 187 ALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNS 246

Query: 303 IIAGYALHGYSEEALDLYYEMRDS--GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           II+  A  G+  +AL L+  M++S  G++ D FTF+ ++ +C    +    +Q HA L+R
Sbjct: 247 IISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIR 306

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
                +I+  + LV  YS+ GR+  A+ +F++M  +N  SWN++I GY  +G  +EA+ L
Sbjct: 307 ANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRL 366

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
           F+QM LNG++P+  +  ++LS+C     S++G E+   + R+  ++   +    ++++  
Sbjct: 367 FKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRN-TMEEEGILQVVLVDMYA 425

Query: 481 REGLLDEAFALIRGAPFKTTKN--MWAALLTACRVNG------NLELGKFAAEKLYG-ME 531
           + G +D A+  +     K  +N  +W ++L      G      N  L    ++  Y  + 
Sbjct: 426 KCGSMDYAWK-VYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLT 484

Query: 532 PEKLSNYVV----LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
              + N +V    L+++Y+  G + +A  V   +  K +      SW       +  +SG
Sbjct: 485 MVTIVNLLVLETALVDMYSKCGAITKARTVFDNMNGKNI-----VSW-------NAMISG 532

Query: 588 DQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLL 621
              H  +KE       +  E+ K G  P E T L
Sbjct: 533 YSKHGCSKEAL----ILYEEMPKKGMYPNEVTFL 562



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 156/317 (49%), Gaps = 9/317 (2%)

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED-- 284
           SD     ++++I+          GK +H+  +  G+  + ++   ++ +Y++ G ++D  
Sbjct: 67  SDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLC 126

Query: 285 -AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
            A+ +F+EM E+    WNT+I  YA      EA  ++  M   GV  D+FTF+  +R+C 
Sbjct: 127 YARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCG 186

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            L S +  KQ H+ L+  GF  D    +AL+D Y+K    E    VFD+M  +N ++WN+
Sbjct: 187 ALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNS 246

Query: 404 LIAGYGNHGRGEEAVELFEQML--LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           +I+     G   +A+ LF +M    +G++P+  TF  +L+ C+      +G +I   + R
Sbjct: 247 IISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIR 306

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--L 519
            + I    +    ++ +    G L+ A  +      +   + W +++   + NG  +  L
Sbjct: 307 AN-ITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYS-WNSMIEGYQQNGETQEAL 364

Query: 520 GKFAAEKLYGMEPEKLS 536
             F   +L G++P+  S
Sbjct: 365 RLFKQMQLNGIKPDCFS 381


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/644 (36%), Positives = 361/644 (56%), Gaps = 35/644 (5%)

Query: 85  LPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLR 144
           L D   KK      + +     N    EA E+F  +         S +++ L++A +   
Sbjct: 130 LFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRN-----SISWNGLLAAYVHNG 184

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
            ++E +R+F     +    +L   N ++  +V+  M+ DAR+LFD MP R+++S N +I+
Sbjct: 185 RLKEARRLFE----SQSNWELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMIS 240

Query: 205 GMIDSGDYLEAFLLFLD-------LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257
           G    GD  +A  LF +        W      G      +  A    + + V  ++   A
Sbjct: 241 GYAQVGDLSQAKRLFNESPIRDVFTWTAMVS-GYVQNGMVDEARKYFDEMPVKNEISYNA 299

Query: 258 LKMGF---------GD--------NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW 300
           +  G+         G+        N+     +I  Y + G I  A+ +FD M ++  V W
Sbjct: 300 MLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSW 359

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
             II+GYA +G+ EEAL+++ EM+  G   +  TFS  +  C  +A+LE  KQ H  +V+
Sbjct: 360 AAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVK 419

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
            GF       +AL+  Y K G  ++A  VF+ +  K+V+SWN +IAGY  HG G +A+ L
Sbjct: 420 AGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVL 479

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
           FE M   G++P+ +T + VLSACS SGL +RG E F SM RD+ +KP + HY CMI+LLG
Sbjct: 480 FESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLG 539

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540
           R G L+EA  L+R  PF      W ALL A R++GN ELG+ AAE ++ MEP+    YV+
Sbjct: 540 RAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVL 599

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRK 600
           L N+Y +SG+  +  ++   +R  G++ +   SW+EV+ + H F  GD  H +   IY  
Sbjct: 600 LSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAF 659

Query: 601 VDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQS 659
           ++ + L++ + GYV   K +L DV+E+E + +L YHSEKLAVAFG++      P++++++
Sbjct: 660 LEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVMKN 719

Query: 660 HRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            R+C DCHNAIK I+ + GR I++RD+ RFHHF +G+CSCGDYW
Sbjct: 720 LRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW 763



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/405 (21%), Positives = 177/405 (43%), Gaps = 62/405 (15%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           +PD+   N+ +  H+R G    A R+F+ MP R+ VS N +I+G + +      F L  D
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAK----FSLARD 98

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           L+++  +    ++  M+        +    +L     K     +V    A++  Y++ G 
Sbjct: 99  LFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPK----KDVVSWNAMLSGYAQNGF 154

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           +++A+ VF++M  + ++ WN ++A Y  +G  +EA  L+    +                
Sbjct: 155 VDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSN---------------- 198

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
                                   ++++ + L+  Y K   + DAR +FD+M  ++VISW
Sbjct: 199 -----------------------WELISWNCLMGGYVKRNMLGDARQLFDRMPVRDVISW 235

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           N +I+GY   G   +A  LF +  +  +     T+ A++S   ++G+ +   + F  M  
Sbjct: 236 NTMISGYAQVGDLSQAKRLFNESPIRDV----FTWTAMVSGYVQNGMVDEARKYFDEMPV 291

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
            ++I      Y  M+    +   +  A  L    P +   + W  ++T    NG    G 
Sbjct: 292 KNEIS-----YNAMLAGYVQYKKMVIAGELFEAMPCRNISS-WNTMITGYGQNG----GI 341

Query: 522 FAAEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
             A KL+ M P++   ++  +++ Y  +G  +EA  +   ++R G
Sbjct: 342 AQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDG 386


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/618 (33%), Positives = 363/618 (58%), Gaps = 35/618 (5%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D  ++K        I   V N  Y EAL +F+++     F+    T+  ++ AC GL ++
Sbjct: 95  DRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVM-LSCAFNPDHYTFPCVLKACSGLDNL 153

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
           R   +V   ++  G + +L++ N ++ M+ +CG + +AR++ D+MP R++VS N ++AG 
Sbjct: 154 RVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGY 213

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
             SG + +A                               + + K++ S  L    G   
Sbjct: 214 AQSGQFDDA-------------------------------LEICKEMDSLNLNHDAG--T 240

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
             S + +  Y+   +++    +F+ M++K  + WN +IA Y  +    EA+ L+ +M + 
Sbjct: 241 MASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEEC 300

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           G+K D  T + ++  C  L++L   ++ H  + +     +++  +AL+D Y+K G +E+A
Sbjct: 301 GMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEEA 360

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           R VFDKM  ++V+SW ++++ YG  G+G +AV LF +ML +G  P+ + F++VLSACS +
Sbjct: 361 RDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHT 420

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           GL ++G   F+ M+  + I PR  H+ACM++L GR G ++EA++ I+  P +  + +W A
Sbjct: 421 GLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGA 480

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           LL+ACRV+  +++G  AA+ L+ + P++   YV+L NIY  +G  K+   V   +++ G+
Sbjct: 481 LLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGI 540

Query: 567 RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE 626
           + +P  S +E+  Q H FL+GDQ H Q K IY ++D ++ ++ + GY+P+ ++ L DV+ 
Sbjct: 541 KKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEV 600

Query: 627 QEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
           +++   L+ HSEKLA+ F ++NT   TP++I ++ R+C DCH AIKLI+ +  R I+VRD
Sbjct: 601 EDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRD 660

Query: 686 ASRFHHFKDGMCSCGDYW 703
            +RFHHF +G+CSCGDYW
Sbjct: 661 CNRFHHFSNGICSCGDYW 678



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 143/298 (47%), Gaps = 13/298 (4%)

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
           L+  YS  G    A+ +FD   EK  V +N +I  Y  +    EAL ++  M       D
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
           H+TF  +++ C+ L +L    Q H  +V+ G   ++   +ALV  Y K G + +AR V D
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
           +M  ++V+SWN+++AGY   G+ ++A+E+ ++M    +  +  T  ++      + L   
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENV 256

Query: 452 GW--EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWAA 506
            +   +F+ M++ + I      +  MI +     + +EA +L   +     K      A+
Sbjct: 257 QYIHNMFERMTKKNLIS-----WNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIAS 311

Query: 507 LLTACRVNGNLELGKFAAEKLY--GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           LL AC     L LG+   + +    ++P  L     LL++Y   G L+EA +V   +R
Sbjct: 312 LLPACGDLSALFLGRRLHKYIEKGNLQPNLLLEN-ALLDMYAKCGCLEEARDVFDKMR 368


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/570 (38%), Positives = 337/570 (59%), Gaps = 27/570 (4%)

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
           RE +++F  M  T    +    N ++  +V+ GM+ +AR++FD+MPERN+VS   +I G 
Sbjct: 11  REARKLFDKMPET----NTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGY 66

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
           +  G   EA LLF  + E      +     +I        +   +QL      M    +V
Sbjct: 67  VQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGR----VDEARQL----FDMMPVKDV 118

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG-------------YALHGYS 313
             S  +ID     G + +A+ +FDEM ++  V W ++I+G             Y   G+ 
Sbjct: 119 VASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFE 178

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
            EAL L+  M+  GV+    +   ++ +C  LASL+H +Q H+ LVR  F +DI  +S L
Sbjct: 179 LEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVL 238

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           +  Y K G +  A+ VFD+   K+++ WN++IAGY  HG GE+A+E+F  M  + + P+ 
Sbjct: 239 ITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDE 298

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
           +TF+ VLSACS +G  + G EIF+SM   +++ P+  HYACM++LLGR G L+EA  LI 
Sbjct: 299 ITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIE 358

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
             P +    +W ALL ACR + NL+L + AA+KL  +EP     Y++L N+Y+S  + K+
Sbjct: 359 NMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKD 418

Query: 554 AAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL-SGDQSHVQTKEIYRKVDRMMLEISKHG 612
             E+ +T+R K LR  P CSWIEV K+ H+F   G  SH + + I +K+ ++   + + G
Sbjct: 419 VVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAG 478

Query: 613 YVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           Y P+   ++ DVDE+E+   L  HSEKLAVA+GL+   +  P++++++ R+C D H+ IK
Sbjct: 479 YCPDGSFVMHDVDEEEKVHSLRDHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIK 538

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
           LIA VTGREI++RD +RFHHFKDG+CSC D
Sbjct: 539 LIAQVTGREIILRDTNRFHHFKDGLCSCSD 568



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 99/207 (47%), Gaps = 15/207 (7%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL LF +++ EG      S   +++S C  L S+   ++V S ++ + F+ D+Y+ + +
Sbjct: 180 EALALFSLMQREGVRPSFPSVI-SVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVL 238

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+++CG ++ A+R+FD    +++V  N IIAG    G   +A  +F D++        
Sbjct: 239 ITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDE 298

Query: 232 RTFATMIRASA-------GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
            TF  ++ A +       GLE+    K  +    K         +C ++D+  + G + +
Sbjct: 299 ITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPK-----TEHYAC-MVDLLGRAGKLNE 352

Query: 285 AQGVFDEMS-EKTTVGWNTIIAGYALH 310
           A  + + M  E   + W  ++     H
Sbjct: 353 AMNLIENMPVEADAIVWGALLGACRTH 379



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 90/208 (43%), Gaps = 34/208 (16%)

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           Y +  R  +AR +FDKM   N ISWN L++GY  +G   EA ++F++M       N V++
Sbjct: 4   YFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKM----PERNVVSW 59

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
            A++    + GL E    +F  M   + +      +  M+  L  +G +DEA  L    P
Sbjct: 60  TAMIRGYVQEGLIEEAELLFWRMPERNVVS-----WTVMLGGLIEDGRVDEARQLFDMMP 114

Query: 497 FK---TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL--------------SNYV 539
            K    + NM   L +  R+          A +++   P++                 + 
Sbjct: 115 VKDVVASTNMIDGLCSEGRL--------IEAREIFDEMPQRNVVAWTSMISGEKDDGTWS 166

Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
            ++ IY   G   EA  +   ++R+G+R
Sbjct: 167 TMIKIYERKGFELEALALFSLMQREGVR 194



 Score = 41.2 bits (95), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 77/165 (46%), Gaps = 19/165 (11%)

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           +AGY  + R  EA +LF++M       N +++  ++S   ++G+     ++F  M   + 
Sbjct: 1   MAGYFQNKRPREARKLFDKM----PETNTISWNGLVSGYVQNGMISEARKVFDKMPERNV 56

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           +      +  MI    +EGL++EA  L    P +   + W  +L     +G ++     A
Sbjct: 57  VS-----WTAMIRGYVQEGLIEEAELLFWRMPERNVVS-WTVMLGGLIEDGRVD----EA 106

Query: 525 EKLYGMEPEKLSNYVVLLNIYN---SSGKLKEAAEVIRTLRRKGL 566
            +L+ M P K  + V   N+ +   S G+L EA E+   + ++ +
Sbjct: 107 RQLFDMMPVK--DVVASTNMIDGLCSEGRLIEAREIFDEMPQRNV 149


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/577 (36%), Positives = 348/577 (60%), Gaps = 1/577 (0%)

Query: 128 VGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL 187
           V +S +  ++  C    ++ E K      +    + D+ + N ++  + +CG +  AR++
Sbjct: 61  VQASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQV 120

Query: 188 FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI 247
           FD M ER+LVS N +I     +    EA  +F ++  E       T ++++ A       
Sbjct: 121 FDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDA 180

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
              K+LH  ++K     N++V  AL+D+Y+KCG I DA  VF+ M +K++V W++++AGY
Sbjct: 181 LECKKLHCLSMKTSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGY 240

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
                 EEAL LY   +   ++ + FT S +I  C+ LA+L   KQ HA + + GFG ++
Sbjct: 241 VQSKNYEEALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNV 300

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              S+ VD Y+K G + ++  +F ++  KN+  WN +I+G+  H R +E + LFE+M  +
Sbjct: 301 FVASSAVDMYAKCGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQD 360

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           GM PN VTF ++LS C  +GL E G   F+ M   + + P  +HY+CM+++LGR GLL E
Sbjct: 361 GMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSE 420

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A+ LI+  PF+ T ++W +LL +CRV  NLEL + AA+KL+ +EPE   N+V+L NIY +
Sbjct: 421 AYELIKSIPFEPTASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAA 480

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
           + + +E A+  + LR   ++ +   SWI++K + H+F  G+ SH + +EI   +D +++E
Sbjct: 481 NKQWEEIAKSRKLLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNLVIE 540

Query: 608 ISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
           + K GY P  +  L DV+  +++ +L  HSEKLA+ FGL+   + + ++I+++ RIC DC
Sbjct: 541 LRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPEGSTVRIMKNLRICVDC 600

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           H  +K  +M T R I+VRDA+RFHHF DG CSCG++W
Sbjct: 601 HEFMKAASMATRRFIIVRDANRFHHFSDGHCSCGEFW 637



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 168/304 (55%), Gaps = 5/304 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N+   EAL++F  +  EG F     T  +++SAC       E K++    + T  + +LY
Sbjct: 142 NRMESEALDIFWEMRNEG-FKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNLY 200

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   +L ++ +CGM+ DA ++F+ M +++ V+ + ++AG + S +Y EA LL+       
Sbjct: 201 VGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMS 260

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            +    T +++I A + L  +  GKQ+H+   K GFG NVFV+ + +DMY+KCGS+ ++ 
Sbjct: 261 LEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESY 320

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +F E+ EK    WNTII+G+A H   +E + L+ +M+  G+  +  TFS ++ +C    
Sbjct: 321 IIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTG 380

Query: 347 SLEHAKQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WNA 403
            +E  ++    L+R  +GL  ++V  S +VD   + G + +A  +   +  +   S W +
Sbjct: 381 LVEEGRRFFK-LMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGS 439

Query: 404 LIAG 407
           L+A 
Sbjct: 440 LLAS 443


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/569 (37%), Positives = 334/569 (58%), Gaps = 3/569 (0%)

Query: 138 SACIGLRSIREVKRVFSYMLSTGFEP-DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL 196
           +AC   R      ++ +  L  G+ P D ++    + M+ + G +  ARRLF+EMP RN+
Sbjct: 121 AACAPPRCSTVGPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNV 180

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256
           ++ N ++   +  G  LE F  +  L E        +      A AG   +S+G+Q H  
Sbjct: 181 IAWNAVMTNAVIDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGF 240

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
            +  GF  +V VS A++D Y KC     A+ VFD M  + +V W ++I  YA HG  E+A
Sbjct: 241 VVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDA 300

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
           L +Y   R++G +   F  S ++  C  L  L   +  HA  VR     +I   SALVD 
Sbjct: 301 LAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDM 360

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVT 435
           Y K G +EDA  VF  M  +N+++WNA+I GY + G  + A+ +F+ M+ +G   PNH+T
Sbjct: 361 YGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHIT 420

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
            + V++ACSR GL++ G+E+F +M     ++PR  HYAC+++LLGR G+ + A+ +I+  
Sbjct: 421 LVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRM 480

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           P + + ++W ALL AC+++G  ELG+ A+EKL+ ++P+   N+V+L N+  S+G+  EA 
Sbjct: 481 PMRPSISVWGALLGACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEAT 540

Query: 556 EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
           +V + ++  G++  P CSWI  K   HVF + D  H +  EI   + ++  ++   GY+P
Sbjct: 541 DVRKEMKNVGIKKEPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQASGYMP 600

Query: 616 EEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
           + +  L DV+E+E+    + HSEKLA+AFGLI+     P++I ++ RIC DCH A K ++
Sbjct: 601 DTQYSLYDVEEEEKETEVFQHSEKLALAFGLIHIPPSVPIRITKNLRICVDCHRAFKFVS 660

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            + GREI+VRD +RFH+FK   CSC DYW
Sbjct: 661 GIVGREIIVRDNNRFHYFKQFECSCKDYW 689



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 104/352 (29%), Positives = 171/352 (48%), Gaps = 18/352 (5%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V++ R  E  + +  L   GG     S   A  +AC G   +   ++   ++++ GF+ D
Sbjct: 191 VIDGRPLETFKAYFGLREAGGMPNVVSVC-AFFNACAGAMFLSLGEQFHGFVVTCGFDMD 249

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVS-CNMIIAGMIDSG--DYLEAFLLFLD 221
           + + N ++  + +C     AR +FD M  RN VS C+MI+A        D L  ++   +
Sbjct: 250 VSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARN 309

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
             EE +D      ++++   AGL  ++ G+ LH+ A++     N+FV+ AL+DMY KCG 
Sbjct: 310 TGEEPTDF---MVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGG 366

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIR 340
           +EDA+ VF +M E+  V WN +I GYA  G ++ AL ++  M R  G   +H T   +I 
Sbjct: 367 VEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVIT 426

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVAN--SALVDFYSKWGRIEDARHVFDKMLCKNV 398
            C+R   L          +R  FG++      + +VD   + G  E A  +  +M  +  
Sbjct: 427 ACSR-GGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPS 485

Query: 399 IS-WNALIAGYGNHGRGE----EAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           IS W AL+     HG+ E     + +LFE  L      NHV    +L++  R
Sbjct: 486 ISVWGALLGACKMHGKTELGRIASEKLFE--LDPQDSGNHVLLSNMLASAGR 535



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 90/200 (45%), Gaps = 4/200 (2%)

Query: 249 VGKQLHSCALKM-GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           +G+  H+ AL++   G   F+   L+++YSK      A          T V +   I+G 
Sbjct: 27  LGRAAHARALRLLSPGLPPFICAHLVNLYSKLDLPAAAASALASDPNPTVVSFTAFISGA 86

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR--ICTRLASLEHAKQAHAGLVRHGF-G 364
           A H     AL  +  M   G++ + FTF    +   C          Q HA  +R G+  
Sbjct: 87  AQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGPQIHALALRFGYLP 146

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D   + A +D Y K G +  AR +F++M  +NVI+WNA++      GR  E  + +  +
Sbjct: 147 GDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFGL 206

Query: 425 LLNGMRPNHVTFLAVLSACS 444
              G  PN V+  A  +AC+
Sbjct: 207 REAGGMPNVVSVCAFFNACA 226



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 103/241 (42%), Gaps = 12/241 (4%)

Query: 81  KESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISA- 139
           K  ++ D    + S   CS I     +    +AL ++      G  + G    D ++S+ 
Sbjct: 268 KARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYM-----GARNTGEEPTDFMVSSV 322

Query: 140 ---CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL 196
              C GL  +   + + +  + +  + ++++ + ++ M+ +CG + DA ++F +MPERNL
Sbjct: 323 LTTCAGLLGLNFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNL 382

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQLHS 255
           V+ N +I G    GD   A  +F  +        +  T   +I A +   L   G +L  
Sbjct: 383 VTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFD 442

Query: 256 CAL-KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYS 313
               + G          ++D+  + G  E A  +   M  + ++  W  ++    +HG +
Sbjct: 443 TMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKT 502

Query: 314 E 314
           E
Sbjct: 503 E 503



 Score = 45.4 bits (106), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 8/200 (4%)

Query: 352 KQAHAGLVRH-GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
           + AHA  +R    GL     + LV+ YSK      A           V+S+ A I+G   
Sbjct: 29  RAAHARALRLLSPGLPPFICAHLVNLYSKLDLPAAAASALASDPNPTVVSFTAFISGAAQ 88

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVL--SACSRSGLSERGWEIFQSMSRDHKIKPR 468
           H R   A+  F  ML  G+RPN  TF +    +AC+    S  G +I     R   +   
Sbjct: 89  HARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGPQIHALALRFGYLPGD 148

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
                  +++  + G L  A  L    P +     W A++T   ++G   L  F A   +
Sbjct: 149 PFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVI-AWNAVMTNAVIDGR-PLETFKA--YF 204

Query: 529 GM-EPEKLSNYVVLLNIYNS 547
           G+ E   + N V +   +N+
Sbjct: 205 GLREAGGMPNVVSVCAFFNA 224


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/639 (33%), Positives = 363/639 (56%), Gaps = 67/639 (10%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD-- 189
           T   ++S+C   +++   +++ S+++  G    + +   +L M+ +CG  + A+ +FD  
Sbjct: 144 TVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRM 203

Query: 190 -----------------------------EMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
                                        +MP+R++VS N +I+G    G  LEA ++F 
Sbjct: 204 TVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFS 263

Query: 221 DLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKM------GFGD--------- 264
            +  E S    + T A+++ A A LE +++GKQ+H+  L+         G+         
Sbjct: 264 KMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKS 323

Query: 265 ------------------NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
                             N+    +L+D Y+K G+++ A+ +F+++ ++  V W  +I G
Sbjct: 324 GGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVG 383

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           Y  +G   +AL+L+  M + G + + +T + ++ + + L  LEH KQ HA  ++ G    
Sbjct: 384 YVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESST 443

Query: 367 IVANSALVDFYSKWGRIEDARHVFD-KMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
               +AL+  Y+K G I  A+ VFD     K ++SW ++I     HG G+EA+ LFE+ML
Sbjct: 444 PSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERML 503

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
             GM+P+H+T++ VLSAC+  GL E+G + +  M+  H+I+P   HYACMI+L GR GLL
Sbjct: 504 SVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLL 563

Query: 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
            EA+  I   P +     W +LL +C+++ N +L K AAE+L  ++P     Y+ L N+Y
Sbjct: 564 QEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVY 623

Query: 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
           ++ GK + AA+  + ++ +G+R     SWI +K + H F   D  H Q  EIY+ +  + 
Sbjct: 624 SACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIW 683

Query: 606 LEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICC 664
            EI K G++P+ +++L D++E+ ++++L YHSEKLA+AFGL+NT + T L+I+++ R+C 
Sbjct: 684 EEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCN 743

Query: 665 DCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           DCH+AIK I+ + GREI+VRDA+RFHHFKDG CSC DYW
Sbjct: 744 DCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 139/543 (25%), Positives = 233/543 (42%), Gaps = 115/543 (21%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYM-LSTGFEPDLYMRNRVLLMHVRCGMMID 183
           G  +G    + L++      S+R    VF  M L + F       N ++  + + G    
Sbjct: 40  GLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFS-----WNTLISGYAKQGNFEV 94

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           +RRL  EMP+ + VS   II G    G +  A  +F  +  E       T + ++ + A 
Sbjct: 95  SRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAA 154

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS---------- 293
            + + +G+++HS  +K+G G  V V+ +L++MY+KCG    A+ VFD M+          
Sbjct: 155 NQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNAL 214

Query: 294 ---------------------EKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMD 331
                                ++  V WN++I+GY+  GY+ EAL ++ +M  +  +K D
Sbjct: 215 ISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPD 274

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVR------------------------------- 360
           +FT + I+  C  L  L   KQ HA ++R                               
Sbjct: 275 NFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVE 334

Query: 361 --HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
                 L+I+A ++L+D Y+K G ++ AR +F+K+  ++V++W A+I GY  +G   +A+
Sbjct: 335 HNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDAL 394

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM------------------- 459
           ELF  M+  G  PN  T  A+LS  S   + E G +I  S                    
Sbjct: 395 ELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMY 454

Query: 460 SRDHKI------------KPRAMHYACMIELLGREGLLDEAFALIR---GAPFKTTKNMW 504
           ++   I            K   + +  MI  L + GL  EA  L         K     +
Sbjct: 455 AKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITY 514

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPE------KLSNYVVLLNIYNSSGKLKEAAEVI 558
             +L+AC   G +E G+    K Y M  E       LS+Y  ++++Y  +G L+EA   I
Sbjct: 515 VGVLSACTHVGLVEQGR----KYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFI 570

Query: 559 RTL 561
            ++
Sbjct: 571 ESM 573



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 171/379 (45%), Gaps = 53/379 (13%)

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
           S   S  FA +++ S  ++    G+ +H   +K G    V++   L+  Y+K GS+  A 
Sbjct: 6   SPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAH 65

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG------------------- 327
            VFDEM  K+T  WNT+I+GYA  G  E +  L YEM D                     
Sbjct: 66  HVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDN 125

Query: 328 ------------VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
                       V    FT S ++  C    +L+  ++ H+ +V+ G G  +   ++L++
Sbjct: 126 AIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLN 185

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-- 433
            Y+K G    A+ VFD+M  KN+ +WNALI+ Y   G+ E A   FE+M      P+   
Sbjct: 186 MYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKM------PDRDI 239

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL---LGREGLLDEAFA 490
           V++ +++S  S+ G +     IF  M  +  +KP     A ++     L +  +  +  A
Sbjct: 240 VSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHA 299

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN-----YVVLLNIY 545
            I  A  +T+  +  AL++    +G +E+ +   E        + SN     +  LL+ Y
Sbjct: 300 YILRAETETSGAVGNALISMYAKSGGVEIARLIVEH------NRTSNLNIIAFTSLLDGY 353

Query: 546 NSSGKLKEAAEVIRTLRRK 564
              G +K A E+   LR +
Sbjct: 354 TKLGNVKPAREIFNKLRDR 372



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 101/216 (46%), Gaps = 6/216 (2%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N  + +ALELF ++  EG  +  S T  A++S    L  +   K++ +  +  G    
Sbjct: 385 VQNGLWNDALELFRLMVNEGP-EPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESST 443

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMP--ERNLVSCNMIIAGMIDSGDYLEAFLLFLDL 222
             + N ++ M+ + G +  A+R+FD +P  ++ +VS   +I  +   G   EA  LF  +
Sbjct: 444 PSVTNALIAMYAKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERM 502

Query: 223 WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCA-LIDMYSKCGS 281
                     T+  ++ A   + L+  G++ ++   ++   +      A +ID+Y + G 
Sbjct: 503 LSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGL 562

Query: 282 IEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEA 316
           +++A    + M  E   + W +++A   +H  ++ A
Sbjct: 563 LQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLA 598


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/610 (37%), Positives = 346/610 (56%), Gaps = 40/610 (6%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S+   AL   C      R+ ++V   M     E D      +++ HVR G +  AR  F+
Sbjct: 199 SNALIALYMKCDAPGVTRDARKVLDEMP----EKDELTWTTIVVGHVRKGDVHAARSAFE 254

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
           E+     V  N +I+G + SG   EAF LF  +  +       TF +++ A A       
Sbjct: 255 EIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLH 314

Query: 250 GKQLHSCALKMGFG----DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
           GK +H   +++         + V+ AL+ +YSK G I  A  +FD M+ K  V WNTI++
Sbjct: 315 GKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILS 374

Query: 306 GYA------------------------------LHG-YSEEALDLYYEMRDSGVKMDHFT 334
           GY                               +HG  +E+AL L+ +MR   VK   +T
Sbjct: 375 GYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYT 434

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           ++  +  C  L +L+H KQ HA LV+ GF     A +AL+  Y++ G ++DAR VF  M 
Sbjct: 435 YAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMP 494

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
             + +SWNA+I+  G HG G EA+ELF+QM+  G+ P+ ++FL +L+AC+ +GL + G++
Sbjct: 495 NVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTACNHAGLVDDGFQ 554

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
            F+SM RD  I P   HYA +I+LLGR G + EA  LI+  PF+ T  +W A+L+ CR+N
Sbjct: 555 YFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRIN 614

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
           G++ELG +AA++L+ M PE    Y++L N Y+++G+  +AA V + +R +G++  P CSW
Sbjct: 615 GDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSW 674

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLS 633
           IEV  + HVFL GD  H    E+YR ++ +  ++ K GYVP+ K  L D+   E+  VL 
Sbjct: 675 IEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQDMAPHEKEYVLF 734

Query: 634 YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
            HSE+LAV+FGL+       + ++++ +IC DCH A+  ++   GREIVVRD  RFHHFK
Sbjct: 735 AHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREIVVRDVRRFHHFK 794

Query: 694 DGMCSCGDYW 703
           DG CSCG+YW
Sbjct: 795 DGECSCGNYW 804



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 166/382 (43%), Gaps = 60/382 (15%)

Query: 179 GMMIDARRLFDEMP--ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR---- 232
           G + D+   FD +P   R+ V  N +I+    +     A  +F  L    SD   R    
Sbjct: 103 GRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLA--SDDSLRPDDY 160

Query: 233 TFATMIRASAGLELISVG--KQLHSCALKMGFGDNVFVSCALIDMYSKC---GSIEDAQG 287
           +F +++ A   +  ++V    QLH    K+G G  + VS ALI +Y KC   G   DA+ 
Sbjct: 161 SFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARK 220

Query: 288 VFDEMSEK-----TT--------------------------VGWNTIIAGYALHGYSEEA 316
           V DEM EK     TT                          V WN +I+GY   G   EA
Sbjct: 221 VLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEA 280

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV------AN 370
            +L+  M    +  D FTF+ ++  C       H K  H   +R     D V       N
Sbjct: 281 FELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVHGQFIR--LQPDFVPEAALPVN 338

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           +ALV  YSK G+I  A  +FD M  K+V+SWN +++GY   G  + A  +F++M      
Sbjct: 339 NALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYK--- 395

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL---DE 487
            + ++++ ++S     GL+E   ++F  M R   +KP    YA  +   G  G L    +
Sbjct: 396 -SELSWMVMVSGYVHGGLAEDALKLFNQM-RSEDVKPCDYTYAGAVAACGELGALKHGKQ 453

Query: 488 AFALIRGAPFKTTKNMWAALLT 509
             A +    F+ + +   ALLT
Sbjct: 454 LHAHLVQCGFEASNSAGNALLT 475



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/371 (21%), Positives = 159/371 (42%), Gaps = 55/371 (14%)

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM--SEKTTVGWN 301
           L L ++   L + A+          + +L+  Y+  G + D+   FD +  + + TV  N
Sbjct: 67  LHLYTLSPDLATPAVLFRADPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHN 126

Query: 302 TIIAGYALHGYSEEALDLYYEM--RDSGVKMDHFTFSMIIRICTRLASL--EHAKQAHAG 357
            +I+ +A    +  A+ ++  +   D  ++ D ++F+ ++    ++  L   H  Q H  
Sbjct: 127 AMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCA 186

Query: 358 LVRHGFGLDIVANSALVDFYSKW---GRIEDARHVFDKMLCKNVIS-------------- 400
           + + G G  +  ++AL+  Y K    G   DAR V D+M  K+ ++              
Sbjct: 187 VHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDV 246

Query: 401 -----------------WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
                            WNA+I+GY   G   EA ELF +M+   + P+  TF ++LSAC
Sbjct: 247 HAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSAC 306

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYA------CMIELLGREGLLDEAFALIRGAPF 497
           + +G    G  +     R   ++P  +  A       ++ L  + G +  A  +      
Sbjct: 307 ANAGFFLHGKSVHGQFIR---LQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTL 363

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAE 556
           K   + W  +L+    +G L+     A +++   P K   +++V+++ Y   G  ++A +
Sbjct: 364 KDVVS-WNTILSGYIESGCLD----NAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALK 418

Query: 557 VIRTLRRKGLR 567
           +   +R + ++
Sbjct: 419 LFNQMRSEDVK 429


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/616 (37%), Positives = 331/616 (53%), Gaps = 73/616 (11%)

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER------------------------- 194
           G   D ++ + +L  ++R G   DAR + D MP R                         
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 195 ----------NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
                     N+++ N +++G+  SG   +A L  + +  E     +   +  + A   +
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDV 169

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS----------- 293
             ++VG+QLH   +K G   +  V+ ALIDMY KCG  ++   VFDE S           
Sbjct: 170 GDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALV 229

Query: 294 ------------------------EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
                                   E   V W +I+A    +G   EA+DL+ EM+  G++
Sbjct: 230 AGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIE 289

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            +  T   ++     +A+L H + AH   +R GF  DI   SALVD Y+K GR+ DAR +
Sbjct: 290 PNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMI 349

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449
           F+ M  +NV+SWNA+I GY  HG  E AV LF  M  +  +P+ VTF  VL ACS++G +
Sbjct: 350 FEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWT 409

Query: 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509
           E G   F  M   H I PR  HYACM+ LLGR G LD+A+ +I   PF+    +W +LL 
Sbjct: 410 EEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLG 469

Query: 510 ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK-GLRM 568
           +CRV+GN+ L + AAE L+ +EPE   NYV+L NIY +S K+ +    +R + +  GL+ 
Sbjct: 470 SCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIY-ASKKMWDGVNRLRDMMKTVGLKK 528

Query: 569 LPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE 628
              CSWIE+K + H+ L+GD SH     I  K+  + +E+ + G+ P    +L DV+EQE
Sbjct: 529 EKGCSWIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQE 588

Query: 629 Q-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDAS 687
           +  +LS HSEKLAVA GLI+TS  TPLQ++++ RIC DCH A+K I+    REI VRD +
Sbjct: 589 KDDILSVHSEKLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTN 648

Query: 688 RFHHFKDGMCSCGDYW 703
           RFHHFKDG CSC DYW
Sbjct: 649 RFHHFKDGKCSCADYW 664



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 158/345 (45%), Gaps = 38/345 (11%)

Query: 106 LNKRYREALELFEILEFEG-GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           LN+  R    +  ++   G GF   ++     +SA   +  +   +++  Y++  G   D
Sbjct: 131 LNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLD 190

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM------------------ 206
             +   ++ M+ +CG   +  R+FDE    ++ SCN ++AG+                  
Sbjct: 191 ACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVG 250

Query: 207 -----------------IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
                            + +G  LEA  LF ++  E  +  S T   ++ A A +  +  
Sbjct: 251 RGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMH 310

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G+  H  +L+ GF  +++V  AL+DMY+KCG + DA+ +F+ M  +  V WN +I GYA+
Sbjct: 311 GRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAM 370

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV-RHGFGLDIV 368
           HG +E A+ L+  M+ S  K D  TF+ ++  C++    E  +     +  +HG    + 
Sbjct: 371 HGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRME 430

Query: 369 ANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHG 412
             + +V    + G+++DA  + ++M    +   W +L+     HG
Sbjct: 431 HYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHG 475



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 3/209 (1%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N R  EA++LF  ++ EG  +  S T   ++ A   + ++   +    + L  GF  D
Sbjct: 268 VQNGRDLEAVDLFREMQSEG-IEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHD 326

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           +Y+ + ++ M+ +CG + DAR +F+ MP RN+VS N +I G    G+   A  LF  +  
Sbjct: 327 IYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQS 386

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQ-LHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
                   TF  ++ A +       G+   +    K G    +     ++ +  + G ++
Sbjct: 387 SKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLD 446

Query: 284 DAQGVFDEMS-EKTTVGWNTIIAGYALHG 311
           DA  + ++M  E     W +++    +HG
Sbjct: 447 DAYDIINQMPFEPDGCIWGSLLGSCRVHG 475


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/620 (37%), Positives = 340/620 (54%), Gaps = 75/620 (12%)

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP--ERNLVSCNMIIAGMIDSGDYLEAF 216
           +G   D ++ + +L  ++R G   +AR LFD MP  +R +V  + ++A     GD   A+
Sbjct: 46  SGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAW 105

Query: 217 LLFLDL------------WEEFSDCGSRT---------FATM----------------IR 239
            L  ++            W       +R+          ATM                + 
Sbjct: 106 RLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALS 165

Query: 240 ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
           A   + L+SVG+QLH  A+K G   +  V  ALIDMY KCG   +   VFDE S      
Sbjct: 166 AVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVAS 225

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR--------------- 344
            N +IAG + +    EAL L+ E  D GV+++  +++ I+  C +               
Sbjct: 226 CNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQ 285

Query: 345 --------------------LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
                               +A+L H + AH   +R GF  D+  +SALVD Y+K GR++
Sbjct: 286 AQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVK 345

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           DAR +FD M+ +NV+SWNA+I GY  +G    AV +F  ML    +P+ VTF  +L+AC+
Sbjct: 346 DARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACT 405

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
           ++GL+E G   F+ M  ++ + PR  HYACM+ LLGR G LDEA+ LI   PF+    +W
Sbjct: 406 QAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIW 465

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
            +LL +CRV+GN++L + AAEKL+ +EPE   NYV+L NIY S         V   ++  
Sbjct: 466 GSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDV 525

Query: 565 GLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV 624
           GL+    CSWIE+K + H+ L+GD SH     I  K++++ +++ K G+VP    +L DV
Sbjct: 526 GLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDV 585

Query: 625 DEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVV 683
           +EQE+  +L+ HSEKLAVA GLI+TS  T L+++++ RIC DCH A+K I+   GREI V
Sbjct: 586 EEQEKDDILAVHSEKLAVALGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISV 645

Query: 684 RDASRFHHFKDGMCSCGDYW 703
           RD +RFHHF  G CSCGD+W
Sbjct: 646 RDTNRFHHFSGGKCSCGDFW 665



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/354 (24%), Positives = 159/354 (44%), Gaps = 47/354 (13%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISAC--IGLRSIREVKRVFSYMLS 158
           +  L  + R R+A+     +  EG     ++     +SA   +GL S+ +  ++  Y + 
Sbjct: 128 VSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQ--QLHGYAVK 185

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM------------ 206
            G   D  +   ++ M+ +CG   +  R+FDE    ++ SCN +IAG+            
Sbjct: 186 AGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRL 245

Query: 207 -----------------------IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
                                  + +G  LEA   F ++  + ++  S T   ++ A A 
Sbjct: 246 FKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFAN 305

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           +  +  G+  H  AL+ GF  +V+VS AL+DMY+KCG ++DA+ +FD M  +  V WN +
Sbjct: 306 VAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAM 365

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA----KQAHAGLV 359
           I GYA++G +  A+ +++ M     K D  TF+ ++  CT+    E      K+ H    
Sbjct: 366 IGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHN--- 422

Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHG 412
            +G    +   + +V    + G++++A  +   M    +   W +L+     HG
Sbjct: 423 EYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHG 476



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 45/292 (15%)

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS--EKTTVGWNTII 304
           + + + LH+ A   G   + FV+ +L+  Y + G+  +A+ +FD M   ++T VGW+ ++
Sbjct: 33  LPLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALV 92

Query: 305 AGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA-----GL 358
           A +A  G +E A  L  EM RD GV+ +  T++ ++    R      A  A A     GL
Sbjct: 93  AAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGL 152

Query: 359 VR-------------------------HGFGL------DIVANSALVDFYSKWGRIEDAR 387
           +R                         HG+ +      D    +AL+D Y K G+  +  
Sbjct: 153 LRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVV 212

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
            VFD+    +V S NALIAG   + +  EA+ LF++ +  G+  N V++ ++++ C ++G
Sbjct: 213 RVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNG 272

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR-----EGLLDEAFALIRG 494
                 E F+ M +    +P ++   C++           G     FAL +G
Sbjct: 273 KDLEAVEFFREM-QAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKG 323



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 6/170 (3%)

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378
           L++ +R      D        + C    +L  A+  HA     G   D    S+L+  Y 
Sbjct: 7   LHHFLRHVSFPPDPHLLPTAFKSCP---TLPLARALHAVAEVSGLARDPFVASSLLHAYL 63

Query: 379 KWGRIEDARHVFDKML--CKNVISWNALIAGYGNHGRGEEAVELFEQMLLN-GMRPNHVT 435
           + G   +AR +FD M    + V+ W+AL+A +   G  E A  L E+M  + G+ PN +T
Sbjct: 64  RLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVIT 123

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
           +  ++S  +RSG +        +M  +  ++P A   +C +  +G  GL+
Sbjct: 124 WNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLV 173


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/626 (37%), Positives = 359/626 (57%), Gaps = 8/626 (1%)

Query: 84   SLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGL 143
            S+ +  ++K S    S I  L  N+   +A E F  +   G     + T  + +S+C  L
Sbjct: 916  SVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMP-SNFTLISTLSSCASL 974

Query: 144  RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
              I   +++    L  G + D+ + N +L ++   G   +  ++F  MPE + VS N +I
Sbjct: 975  GWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVI 1034

Query: 204  AGMIDS-GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
              + DS     +A   FL++          TF  ++ A + L L  V  Q+H+  LK   
Sbjct: 1035 GALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCL 1094

Query: 263  GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE-KTTVGWNTIIAGYALHGYSEEALDLYY 321
             D+  +  AL+  Y KCG + + + +F  MSE +  V WN++I+GY  +    +A+DL +
Sbjct: 1095 SDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVW 1154

Query: 322  EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
             M   G ++D FTF+ ++  C  +A+LE   + HA  +R     D+V  SALVD YSK G
Sbjct: 1155 FMMQKGQRLDSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCG 1214

Query: 382  RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT-FLAVL 440
            RI+ A   F+ M  +NV SWN++I+GY  HG GE+A++LF +M+L+G  P+HV   L VL
Sbjct: 1215 RIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVL 1274

Query: 441  SACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTT 500
            SACS  G  E G+E F+SMS  +++ PR  H++CM++LLGR G LDE    I   P K  
Sbjct: 1275 SACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPN 1334

Query: 501  KNMWAALLTAC-RVNG-NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVI 558
              +W  +L AC R NG N ELG+ AAE L  +EP+   NYV+L N+Y S  K ++ A+  
Sbjct: 1335 VLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKAR 1394

Query: 559  RTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEK 618
              ++   ++    CSW+ +K   HVF++GD+ H +   IY K+  +  ++   GY+P+ K
Sbjct: 1395 XAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDXIYDKLRELNRKMRDAGYIPQTK 1454

Query: 619  TLLPDVDEQEQRVL-SYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVT 677
              L D++ + +  L SYHSEK+AVAF L   S   P++I+++ R+C DCH+A   I+ + 
Sbjct: 1455 YALFDLELENKEELLSYHSEKIAVAFVLTRQSA-LPIRIMKNLRVCGDCHSAFGYISKIV 1513

Query: 678  GREIVVRDASRFHHFKDGMCSCGDYW 703
            GR+IV+RD++RFHHF+DG CSCGDYW
Sbjct: 1514 GRQIVLRDSNRFHHFEDGKCSCGDYW 1539



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 136/477 (28%), Positives = 229/477 (48%), Gaps = 60/477 (12%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S T+++LI+   G     E + +    +  GF  +L++ N ++ ++VR G +  A++LFD
Sbjct: 544 SETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFD 603

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA--SAGLELI 247
           EM  RNLV+   +I+G   +G   EA   F D+           F + +RA   +G    
Sbjct: 604 EMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGC 663

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKC-GSIEDAQGVFDEMSEKTTVGWNTIIAG 306
            +G Q+H    K  +G +V V   LI MY  C  S  DA+ VFD +  + ++ WN+II+ 
Sbjct: 664 KLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISV 723

Query: 307 YALHGYSEEALDLYYEMRDSGV----KMDHFTF-SMIIRICTRLA-SLEHAKQAHAGLVR 360
           Y+  G    A DL+  M+  G+    K + +TF S+I   C+ +   L   +Q  A + +
Sbjct: 724 YSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEK 783

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
            GF  D+   SALV  ++++G  +DA+++F++M  +NV+S N L+ G     +GE A ++
Sbjct: 784 SGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKV 843

Query: 421 FEQML-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479
           F +M  L G+  N  +++ +LSA S   + E G           + K R +H   +    
Sbjct: 844 FHEMKDLVGI--NSDSYVVLLSAFSEFSVLEEG-----------RRKGREVHAHVI---- 886

Query: 480 GREGLLDEAFALIRGAPFKTTKNMWA---ALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
            R GL D   A+  G       NM+A   A+  AC V    EL          M  +   
Sbjct: 887 -RTGLNDNKVAIGNG-----LVNMYAKSGAIADACSV---FEL----------MVEKDSV 927

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKG--------LRMLPACS---WIEVKKQPH 582
           ++  L++  + +   ++AAE    +RR G        +  L +C+   WI + +Q H
Sbjct: 928 SWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIH 984



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 184/354 (51%), Gaps = 12/354 (3%)

Query: 113  ALELFEILEFEG---GFDVGSSTYDALISA-CIGLR-SIREVKRVFSYMLSTGFEPDLYM 167
            A +LF  ++ EG    F     T+ +LI+A C  +   +  ++++ + +  +GF  DLY+
Sbjct: 733  AYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFLQDLYV 792

Query: 168  RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
             + ++    R G+  DA+ +F++M  RN+VS N ++ G++       A  +F ++ ++  
Sbjct: 793  GSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM-KDLV 851

Query: 228  DCGSRTFATMIRASAGLELIS----VGKQLHSCALKMGFGDN-VFVSCALIDMYSKCGSI 282
               S ++  ++ A +   ++      G+++H+  ++ G  DN V +   L++MY+K G+I
Sbjct: 852  GINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAI 911

Query: 283  EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
             DA  VF+ M EK +V WN++I+G   +  SE+A + +  MR +G    +FT    +  C
Sbjct: 912  ADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSC 971

Query: 343  TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
              L  +   +Q H   ++ G   D+  ++AL+  Y++ G   +   VF  M   + +SWN
Sbjct: 972  ASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWN 1031

Query: 403  ALIAGYGN-HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
            ++I    +      +AV+ F +M+  G   + VTF+ +LSA S   L E   +I
Sbjct: 1032 SVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQI 1085


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/618 (33%), Positives = 363/618 (58%), Gaps = 35/618 (5%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D  ++K        I   V N  Y EAL +F+++     F+    T+  ++ AC GL ++
Sbjct: 95  DRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVM-LSCAFNPDHYTFPCVLKACSGLDNL 153

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
           R   +V   ++  G + +L++ N ++ M+ +CG + +AR++ D+MP R++VS N ++AG 
Sbjct: 154 RVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGY 213

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
             SG + +A                               + + K++ S  L    G   
Sbjct: 214 AQSGQFDDA-------------------------------LEICKEMDSLNLNHDAG--T 240

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
             S + +  Y+   +++    +F+ M++K  + WN +IA Y  +    EA+ L+ +M + 
Sbjct: 241 MASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEEC 300

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           G+K D  T + ++  C  L++L   ++ H  + +     +++  +AL+D Y+K G +E+A
Sbjct: 301 GMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEEA 360

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           R VFDKM  ++V+SW ++++ YG  G+G +AV LF +ML +G  P+ + F++VLSACS +
Sbjct: 361 RDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSHT 420

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           GL ++G   F+ M+  + I PR  H+ACM++L GR G ++EA++ I+  P +  + +W A
Sbjct: 421 GLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWGA 480

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           LL+ACRV+  +++G  AA+ L+ + P++   YV+L NIY  +G  K+   V   +++ G+
Sbjct: 481 LLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIGI 540

Query: 567 RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE 626
           + +P  S +E+  Q H FL+GDQ H Q K IY ++D ++ ++ + GY+P+ ++ L DV+ 
Sbjct: 541 KKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVEV 600

Query: 627 QEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
           +++   L+ HSEKLA+ F ++NT   TP++I ++ R+C DCH AIKLI+ +  R I+VRD
Sbjct: 601 EDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVRD 660

Query: 686 ASRFHHFKDGMCSCGDYW 703
            +RFHHF +G+CSCGDYW
Sbjct: 661 CNRFHHFSNGICSCGDYW 678



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 142/298 (47%), Gaps = 13/298 (4%)

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
           L+  YS  G    A+ +FD   EK  V +N +I  Y  +    EAL ++  M       D
Sbjct: 77  LMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPD 136

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
           H+TF  +++ C+ L +L    Q H  +V+ G   ++   +ALV  Y K G + +AR V D
Sbjct: 137 HYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLD 196

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
           +M  ++V+SWN+++AGY   G+ ++A+E+ ++M    +  +  T  ++      + L   
Sbjct: 197 QMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDSLNLNHDAGTMASLSPVVCYTSLENV 256

Query: 452 GW--EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWAA 506
            +   +F+ M++ + I      +  MI +     + +EA +L   +     K      A+
Sbjct: 257 QYIHNMFERMTKKNLIS-----WNVMIAIYVNNSMPNEAVSLFLQMEECGMKPDAVTIAS 311

Query: 507 LLTACRVNGNLELGKFAAEKLY--GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           LL AC     L LG+   + +    + P  L     LL++Y   G L+EA +V   +R
Sbjct: 312 LLPACGDLSALFLGRRLHKYIEKGNLRPNLLLEN-ALLDMYAKCGCLEEARDVFDKMR 368


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/576 (37%), Positives = 348/576 (60%), Gaps = 6/576 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T  +++ AC  LR +   K +++YML  GF  +  +RN ++ ++ +CG MI AR +F+ M
Sbjct: 309 TVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSM 368

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLF--LDLWEEFSDCGSRTFATMIRASAGLELISV 249
             ++ VS N II+G I SGD +EA  LF  + + EE +D    T+  +I  S  L  +  
Sbjct: 369 ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQAD--HITYLMLISVSTRLADLKF 426

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           GK LHS  +K G   ++ VS ALIDMY+KCG + D+  +F  M    TV WNT+I+    
Sbjct: 427 GKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVR 486

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G     L +  +MR S V  D  TF + + +C  LA+    K+ H  L+R G+  ++  
Sbjct: 487 FGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQI 546

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            +AL++ YSK G +E++  VF++M  ++V++W  +I  YG +G GE+A+E F  M  +G+
Sbjct: 547 GNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGI 606

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
            P+ V F+A++ ACS SGL + G   F+ M   +KI P   HYAC+++LL R   + +A 
Sbjct: 607 VPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAE 666

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549
             I+  P K   ++WA++L ACR +G++E  +  + ++  + P+     ++  N Y +  
Sbjct: 667 EFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALR 726

Query: 550 KLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEIS 609
           K  + + + ++L+ K +   P  SWIEV K  HVF SGD S  Q++ IY+ ++ +   ++
Sbjct: 727 KWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMA 786

Query: 610 KHGYVPEEKTLLPDV--DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
           K GY+P+ + +  ++  +E+++R++  HSE+LA+AFGL+NT   TPLQ++++ R+C DCH
Sbjct: 787 KEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCH 846

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              KLI+ + GREI+VRDA+RFH FKDG CSC D W
Sbjct: 847 EVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 121/347 (34%), Positives = 191/347 (55%), Gaps = 2/347 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I     N  + EALE +  L  E        T+ ++I AC GL        V+  +L 
Sbjct: 76  SIIRAFSKNGLFPEALEFYGKLR-ESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILD 134

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GFE DL++ N ++ M+ R G++  AR++FDEMP R+LVS N +I+G    G Y EA  +
Sbjct: 135 MGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEI 194

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           + +L   +    S T ++++ A   L ++  G+ LH  ALK G    V V+  L+ MY K
Sbjct: 195 YHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLK 254

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
                DA+ VFDEM  + +V +NT+I GY      EE++ ++ E  D   K D  T S +
Sbjct: 255 FRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLDQ-FKPDLLTVSSV 313

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +R C  L  L  AK  +  +++ GF L+    + L+D Y+K G +  AR VF+ M CK+ 
Sbjct: 314 LRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDT 373

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           +SWN++I+GY   G   EA++LF+ M++   + +H+T+L ++S  +R
Sbjct: 374 VSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTR 420



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 165/300 (55%), Gaps = 2/300 (0%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM-PERNLVSCNMII 203
           ++ E++R+ + ++S G +   +   +++  +        +  +F  + P +N+   N II
Sbjct: 19  NLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSII 78

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
                +G + EA   +  L E        TF ++I+A AGL    +G  ++   L MGF 
Sbjct: 79  RAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFE 138

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
            ++FV  AL+DMYS+ G +  A+ VFDEM  +  V WN++I+GY+ HGY EEAL++Y+E+
Sbjct: 139 SDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHEL 198

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
           ++S +  D FT S ++     L  ++  +  H   ++ G    +V N+ LV  Y K+ R 
Sbjct: 199 KNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRP 258

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
            DAR VFD+M  ++ +S+N +I GY      EE+V +F +  L+  +P+ +T  +VL AC
Sbjct: 259 TDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLEN-LDQFKPDLLTVSSVLRAC 317



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 85/182 (46%), Gaps = 3/182 (1%)

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCK 396
           I R  +  ++L   ++ HA ++  G       +  L+D YS +     +  VF ++   K
Sbjct: 10  ISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAK 69

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           NV  WN++I  +  +G   EA+E + ++  + + P+  TF +V+ AC+    +E G  ++
Sbjct: 70  NVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVY 129

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
           + +  D   +        ++++  R GLL  A  +    P +   + W +L++    +G 
Sbjct: 130 EQI-LDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVS-WNSLISGYSSHGY 187

Query: 517 LE 518
            E
Sbjct: 188 YE 189



 Score = 40.8 bits (94), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 61/122 (50%), Gaps = 4/122 (3%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           +T+   +  C  L + R  K +   +L  G+E +L + N ++ M+ +CG + ++ R+F+ 
Sbjct: 510 ATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFER 569

Query: 191 MPERNLVS-CNMIIA-GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS 248
           M  R++V+   MI A GM   G+  +A   F D+ +      S  F  +I A +   L+ 
Sbjct: 570 MSRRDVVTWTGMIYAYGMYGEGE--KALETFADMEKSGIVPDSVVFIAIIYACSHSGLVD 627

Query: 249 VG 250
            G
Sbjct: 628 EG 629


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/592 (36%), Positives = 351/592 (59%), Gaps = 4/592 (0%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           AL +F  L      D  S+T+   +SAC  L  +R  + V       G++ D+++ + +L
Sbjct: 93  ALRVFRALPPAARPD--STTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLL 150

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            ++ R G M DA ++FD MP R+ V+ + ++AG + +G  L+A  ++  + E+       
Sbjct: 151 HLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEV 210

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
               +I+A      + +G  +H   L+ G   +V  + +L+DMY+K G ++ A  VF  M
Sbjct: 211 VMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLM 270

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
             +  V W+ +I+G+A +G S+EAL L+  M+ SG++ D       +  C+ +  L+  +
Sbjct: 271 VHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGR 330

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
             H  +VR  F  + +  +A +D YSK G +  A+ +F+ +  +++I WNA+IA  G HG
Sbjct: 331 SVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHG 389

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
           RG++A+ LF++M   GMRP+H TF ++LSA S SGL E G   F  M    KI P   HY
Sbjct: 390 RGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHY 449

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532
            C+++LL R GL++EA  L+     + T  +W ALL+ C  N  LELG+  A+ +  ++P
Sbjct: 450 VCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQP 509

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHV 592
           + +    ++ N+Y ++ K  +  +V + ++  G + +P CS IE++   H FL  DQSH 
Sbjct: 510 DDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHP 569

Query: 593 QTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDW 651
           Q +EI  KV ++ LE+ K GY+P  + +  D++E+ +++ LSYHSEKLA+AFGL+NT   
Sbjct: 570 QREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPG 629

Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T L I+++ R+C DCH+AIK I+ +  REIVVRDA RFHHFKDG+CSC DYW
Sbjct: 630 TRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 117/242 (48%), Gaps = 5/242 (2%)

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           ++  G    AL ++  +     + D  TF++ +  C RL  L   +         G+  D
Sbjct: 84  HSRRGSPASALRVFRAL-PPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +   S+L+  Y++WG + DA  VFD+M  ++ ++W+ ++AG+ + G+  +A++++ +M  
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
           +G++ + V  + V+ AC+ +     G  +   + R H ++   +    ++++  + GLLD
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLD 261

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNI 544
            A  +  G         W+A+++    NG  +  L  F   +  G++P+  +    LL  
Sbjct: 262 VACRVF-GLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 545 YN 546
            N
Sbjct: 321 SN 322


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/608 (36%), Positives = 350/608 (57%), Gaps = 6/608 (0%)

Query: 99  SQIEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           S I   V N      +E+F ++L F  G D+  +T   +  AC  + ++   K + SY +
Sbjct: 322 SMISGYVKNGLDDRGIEIFIKMLVF--GVDIDLATMVNVFVACANIGTLLLGKVLHSYSI 379

Query: 158 STG-FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF 216
                + ++   N +L M+ +CG +  A R+F+ M E+ +VS   +I G +  G    A 
Sbjct: 380 KAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAI 439

Query: 217 LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276
            LF ++             +++ A A    +  GK +H    +     N FVS AL DMY
Sbjct: 440 KLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMY 499

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
           +KCGS++DA  VF  M +K  + WNT+I GY  +    EAL L+ EM+    K D  T +
Sbjct: 500 AKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES-KPDGTTVA 558

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            I+  C  LA+L+  ++ H   +R+G+  D    +A+VD Y K G +  AR +FD +  K
Sbjct: 559 CILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNK 618

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           +++SW  +IAGYG HG G EA+  F QM + G+ P+ V+F+++L ACS SGL + GW+IF
Sbjct: 619 DLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIF 678

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
             M ++ +I+P   HYACM++LL R G L +A   I+  P K    +W ALL  CR++ +
Sbjct: 679 NIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHD 738

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
           ++L +  AE+++ +EPE    YV+L NIY  + K +E  ++ + + ++GL+  P CSWIE
Sbjct: 739 VKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIE 798

Query: 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYH 635
           +K + ++F++GD S  Q K+I   + R+  ++ + GY P+    L + DE+E+ V L  H
Sbjct: 799 IKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGH 858

Query: 636 SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
           SEKLA+AFG++N      +++ ++ R+C DCH   K ++    REI++RD+SRFHHFKDG
Sbjct: 859 SEKLAMAFGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDG 918

Query: 696 MCSCGDYW 703
            CSC  YW
Sbjct: 919 SCSCRGYW 926



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 197/364 (54%), Gaps = 4/364 (1%)

Query: 126 FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
           FD+G+  Y +++  C   +SIR+ +RV S + S+G   D  +  +++ M+V+CG + + R
Sbjct: 148 FDLGA--YCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGR 205

Query: 186 RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
            +FD++ E  +   N++I+    SG+Y E+  LF  + E      S TF+++++  A + 
Sbjct: 206 MVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVA 265

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
            +  G+Q+H    K+GF     V  +LI  Y     +  AQ +FDE++++  + WN++I+
Sbjct: 266 RVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMIS 325

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG-FG 364
           GY  +G  +  ++++ +M   GV +D  T   +   C  + +L   K  H+  ++     
Sbjct: 326 GYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLD 385

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            ++  N+ L+D YSK G +  A  VF++M  K V+SW ++I GY   G  + A++LF++M
Sbjct: 386 REVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEM 445

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
              G+ P+     ++L+AC+ +G  + G +I     R++ ++  +     + ++  + G 
Sbjct: 446 KSRGVVPDVYAVTSILNACAINGNLKSG-KIVHDYIRENNLETNSFVSNALTDMYAKCGS 504

Query: 485 LDEA 488
           + +A
Sbjct: 505 MKDA 508



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 190/393 (48%), Gaps = 43/393 (10%)

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
           GD   A  L         D G+  + ++++  A  + I  G+++ S     G   +  + 
Sbjct: 131 GDLKNAMELLCSSQNSNFDLGA--YCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILG 188

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
             L+ MY KCG +++ + VFD++SE     WN +I+ Y+  G   E+++L+ +M + G+K
Sbjct: 189 VKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIK 248

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG-LDIVANSALVDFYSKWGRIEDARH 388
            + +TFS I++    +A +E  +Q H  + + GF   + V NS L+ FY    ++  A+ 
Sbjct: 249 PNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNS-LISFYFVGRKVRCAQK 307

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           +FD++  ++VISWN++I+GY  +G  +  +E+F +ML+ G+  +  T + V  AC+  G 
Sbjct: 308 LFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGT 367

Query: 449 SERGWEI----FQSMSRDHKIK---------------------------PRAMHYACMIE 477
              G  +     ++ + D +++                              + +  MI 
Sbjct: 368 LLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMIT 427

Query: 478 LLGREGLLDEAFALIRGAPFK-TTKNMWA--ALLTACRVNGNLELGKFAAEKLYGMEPEK 534
              REGL D A  L      +    +++A  ++L AC +NGNL+ GK   +  Y  E   
Sbjct: 428 GYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHD--YIRENNL 485

Query: 535 LSNYVV---LLNIYNSSGKLKEAAEVIRTLRRK 564
            +N  V   L ++Y   G +K+A +V   +++K
Sbjct: 486 ETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKK 518


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/618 (37%), Positives = 358/618 (57%), Gaps = 7/618 (1%)

Query: 91   KKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVK 150
             K S    S I  L  NK++ EA++ F+ +     +    +   AL S+C  L  I   +
Sbjct: 452  NKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISAL-SSCASLGWISVGE 510

Query: 151  RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS- 209
            ++    L  G + D+ + N +L ++  CG + + ++ F  M + + VS N +I  + DS 
Sbjct: 511  QLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSE 570

Query: 210  GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
               LEA   FL +     D    TF T++ A + L L  +GKQ+H+  LK     +  + 
Sbjct: 571  PSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIE 630

Query: 270  CALIDMYSKCGSIEDAQGVFDEMSEKTT-VGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
             AL+  Y KCG +   + +F  MS++   V WN++I+GY  +    +A+D+ + M   G 
Sbjct: 631  NALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQ 690

Query: 329  KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
            ++D FTF+ ++  C  +A+LE   + H   VR     DIV  SALVD Y+K GRI+ A  
Sbjct: 691  RLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASR 750

Query: 389  VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
             F+ M  +N+ SWN++I+GY  HG G ++++LF QM L G  P+HVTF+ VLSACS +GL
Sbjct: 751  FFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGL 810

Query: 449  SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
               G+  F SMS  + + PR  H++CM++LLGR G L++    +   P K    +W  +L
Sbjct: 811  VNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVL 870

Query: 509  TA-CRVNG-NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
             A CR NG N  LG+ AAE L  MEP    NY++L N+Y S GK  + A+    +R+  +
Sbjct: 871  GACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFV 930

Query: 567  RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD- 625
            +    CSW+ +K   HVF++GD+SH +   IY K+  +  ++   GY+PE +  L D++ 
Sbjct: 931  KKEAGCSWVTMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRFALYDLEG 990

Query: 626  EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
            E ++ +LSYHSEK+AVAF L   S   P++I+++ R+C DCH+A K I+ +  R+IV+RD
Sbjct: 991  ESKEELLSYHSEKIAVAFVLTRPSK-MPIRILKNLRVCGDCHSAFKYISQIVERQIVLRD 1049

Query: 686  ASRFHHFKDGMCSCGDYW 703
            ++RFHHF++G CSCGD+W
Sbjct: 1050 SNRFHHFENGKCSCGDFW 1067



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 181/354 (51%), Gaps = 12/354 (3%)

Query: 113 ALELFEILEFE---GGFDVGSSTYDALISACIGLRS--IREVKRVFSYMLSTGFEPDLYM 167
           A ++F  ++ E    G      T+ +LISA   L +  +  ++++ + +  +GF  DLY+
Sbjct: 262 AFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYV 321

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            + ++    + G +  A+ +F +M  RN+VS N +I G++      EA  LF+++ ++  
Sbjct: 322 GSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM-KDSV 380

Query: 228 DCGSRTFATMIRASAGLELISVGK----QLHSCALKMGF-GDNVFVSCALIDMYSKCGSI 282
           +    ++  ++ A     ++  GK    ++H+  ++ G     + +   LI+MY+KCG+I
Sbjct: 381 ELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAI 440

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
            DA  VF  M  K +V WN++I G   +    EA+  + EMR + +   +FT    +  C
Sbjct: 441 NDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSC 500

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
             L  +   +Q H   ++ G  LD+  ++AL+  Y + G +++ +  F  ML  + +SWN
Sbjct: 501 ASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWN 560

Query: 403 ALIAGYGNHGRGE-EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           +LI    +      EAVE F  M+  G  PN VTF+ +L+A S   L E G +I
Sbjct: 561 SLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQI 614



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 182/372 (48%), Gaps = 15/372 (4%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           +   GF  DL++ N ++ ++ R G +   R++FDEMP RNLVS + +I+G   +    EA
Sbjct: 99  LFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEA 158

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRA--SAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
             LF  +  +        F ++IRA    G   +  G Q+H    K  + ++V  S  LI
Sbjct: 159 CELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLI 218

Query: 274 DMYSKC-GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD----SGV 328
            MY    G ++ A+  FD +  +  V  N++I+ Y   G +  A D++  M+      G+
Sbjct: 219 SMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGL 278

Query: 329 KMDHFTFSMIIRICTRLAS--LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           K + +TF  +I     LA+  L   +Q    + + GF  D+   SALV  ++K G I  A
Sbjct: 279 KPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYA 338

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           +++F KM  +NV+S N LI G     RGEEAVELF +M  + +  N  +++ +L+A    
Sbjct: 339 KNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM-KDSVELNPNSYMIILTAFPEF 397

Query: 447 GLSE----RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
            + E    +G E+   + R   +  +      +I +  + G +++A  + R    K +  
Sbjct: 398 HVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVT 457

Query: 503 MWAALLTACRVN 514
            W +++T    N
Sbjct: 458 -WNSMITGLDQN 468



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 113/209 (54%), Gaps = 10/209 (4%)

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
            ++LH    K GF +++F+   LI++Y++ G +   + VFDEM  +  V W+ +I+GY  
Sbjct: 92  AEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTR 151

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA--SLEHAKQAHAGLVRHGFGLDI 367
           +    EA +L+ +M   G   +H+ F  +IR C       L+   Q H  + +  +  D+
Sbjct: 152 NRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDV 211

Query: 368 VANSALVDFY-SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM-- 424
            A++ L+  Y +  G ++ AR  FD +  +N++S N++I+ Y   G    A ++F  M  
Sbjct: 212 TASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQK 271

Query: 425 --LLNGMRPNHVTFLAVLSA-CS--RSGL 448
             + +G++PN  TF +++SA CS   SGL
Sbjct: 272 EVMGDGLKPNEYTFGSLISATCSLANSGL 300


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/541 (38%), Positives = 323/541 (59%), Gaps = 3/541 (0%)

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
           ++ N ++ M+ +      A+ L    P R++V+   +IAG + +G +  A   F ++  +
Sbjct: 43  FIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRD 102

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                  TF    +AS  L    VGKQ+H+ A+K G   +VFV C+  DMYSK G  E+A
Sbjct: 103 SIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEA 162

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
           + +FDEM E+    WN  ++   L G  ++AL  + E R  G++   F  S ++  C  L
Sbjct: 163 RKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGL 222

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           + LE  K  H   V+     +I   SALVD Y K G IEDA   FD+M  +N+++WNA+I
Sbjct: 223 SVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMI 282

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMR--PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
            GY + G+ + AV LF++M     R  PN+VTF+ VLSACSR+G    G EIF+SM   +
Sbjct: 283 GGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRY 342

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            I+P A HYAC+++LLGR G++++A+  I+  P + T ++W ALL A ++ G  ELGK A
Sbjct: 343 GIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVA 402

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
           A+ L+ ++P    N+V+L N++ ++G+ +EA  V + ++  G++    CSWI      HV
Sbjct: 403 ADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHV 462

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVA 642
           F + D SH +  EI   + ++  E+   GY+P+    L D++E+E+ + + YHSEK+A+A
Sbjct: 463 FQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALA 522

Query: 643 FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           FGLI+     P++I ++ RIC DCH+AIK I+ + GREI+VRD + FH F+D  CSC DY
Sbjct: 523 FGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDY 582

Query: 703 W 703
           W
Sbjct: 583 W 583



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 175/354 (49%), Gaps = 13/354 (3%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   V N R+  AL  F  +  +        T+     A   LRS    K+V +  +  G
Sbjct: 80  IAGSVQNGRFTSALFHFSNMRRDS-IQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAG 138

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              D+++      M+ + G+  +AR++FDEMPERN+ + N  ++  +  G Y +A   F+
Sbjct: 139 QISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFI 198

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           +  +E  +      ++++ A AGL ++ VGK +H+ A+K     N+FV  AL+DMY KCG
Sbjct: 199 EARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCG 258

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR--DSGVKMDHFTFSMI 338
           SIEDA+  FDEM E+  V WN +I GYA  G ++ A+ L+ EM      V  ++ TF  +
Sbjct: 259 SIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCV 318

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVAN--SALVDFYSKWGRIEDARHVFDKMLCK 396
           +  C+R  S+    +    + R  +G++  A   + +VD   + G +E A     KM  +
Sbjct: 319 LSACSRAGSVNVGMEIFESM-RGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIR 377

Query: 397 NVIS-WNALIAGYGNHGRGE----EAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
             +S W AL+      G+ E     A  LFE   L+    NHV    + +A  R
Sbjct: 378 PTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDS--GNHVLLSNMFAAAGR 429


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/630 (36%), Positives = 363/630 (57%), Gaps = 22/630 (3%)

Query: 76  YTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDA 135
           Y +E +E  + D   +K S      +   V N R  EA  LFE    +  +D+ S  ++ 
Sbjct: 157 YVDEARE--VFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFES---KSDWDLIS--WNC 209

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           L+   +  + + + + +F  M       D    N ++  + + G +  ARRLFDE P R+
Sbjct: 210 LMGGFVRKKKLGDARWLFDKMPVR----DAISWNTMISGYAQGGGLSQARRLFDESPTRD 265

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL-H 254
           + +   +++G + +G   EA   F    +E  +    ++  MI      + + + ++L  
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFF----DEMPEKNEVSYNAMIAGYVQTKKMDIARELFE 321

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           S   +     N+     +I  Y + G I  A+  FD M ++  V W  IIAGYA  G+ E
Sbjct: 322 SMPCR-----NISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYE 376

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EAL+++ E++  G  ++  TF   +  C  +A+LE  KQ H   V+ G+G      +AL+
Sbjct: 377 EALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALL 436

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
             Y K G I++A   F+ +  K+V+SWN ++AGY  HG G +A+ +FE M   G++P+ +
Sbjct: 437 AMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEI 496

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           T + VLSACS +GL +RG E F SM++D+ + P + HY CMI+LLGR G L+EA  LIR 
Sbjct: 497 TMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRN 556

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            PF+     W ALL A R++GN ELG+ AAE ++ MEP+    YV+L N+Y +SG+  +A
Sbjct: 557 MPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDA 616

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
            ++   +R  G++ +P  SW+EV+ + H F  GD SH + + IY  ++ + L++ + GYV
Sbjct: 617 DKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYV 676

Query: 615 PEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLI 673
              K +L DV+E+E + +L YHSEKLAVAFG++      P++++++ R+C DCH+AIK I
Sbjct: 677 SLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHI 736

Query: 674 AMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + + GR I++RD+ RFHHF +G CSCGDYW
Sbjct: 737 SKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/259 (30%), Positives = 128/259 (49%), Gaps = 56/259 (21%)

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
           +GL + G E F  M+ ++ + P + HY CMI+LLGR   L+E                  
Sbjct: 777 TGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE-----------------G 819

Query: 506 ALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
           ALL A R++GN ELG+ AA+  + M P+             +SG        I  +R  G
Sbjct: 820 ALLGASRIHGNTELGEKAAQMFFKMGPQ-------------NSG--------ISKMRDVG 858

Query: 566 LRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD 625
           ++ +P  SW EV+ + H F  G         ++   +R  +     G++ E    + + +
Sbjct: 859 VQKVPGYSWFEVQNKIHTFSVG---------LFLSRERENI-----GFLEELDLKMRERE 904

Query: 626 EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSH-RICCDCHNAIKLIAMVTGREIVVR 684
           E+++R L Y SE LA A G++      P ++++    +C DC +AIK ++ + GR I +R
Sbjct: 905 EEKERTLKYLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLITLR 964

Query: 685 DASRFHHFKDGMCSCGDYW 703
           D+   H F + +CSCG+YW
Sbjct: 965 DS---HRFNESICSCGEYW 980



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 177/406 (43%), Gaps = 64/406 (15%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           +PD+   N+ +  H+R G    A  +F+ MP R+ VS N +I+G + +      F L  +
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRN----SKFNLARN 101

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           L+++  +    ++  M+        +   ++L     +     +V    +L+  Y++ G 
Sbjct: 102 LFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPE----KDVVSWNSLLSGYAQNGY 157

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           +++A+ VFD M EK ++ WN ++A Y  +G  EEA  L+    D                
Sbjct: 158 VDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSD---------------- 201

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
                                   D+++ + L+  + +  ++ DAR +FDKM  ++ ISW
Sbjct: 202 -----------------------WDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISW 238

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           N +I+GY   G   +A  LF++     +     T+ A++S   ++G+ +     F  M  
Sbjct: 239 NTMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVSGYVQNGMLDEAKTFFDEMPE 294

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
            +++      Y  MI    +   +D A  L    P +   + W  ++T     G  ++G 
Sbjct: 295 KNEVS-----YNAMIAGYVQTKKMDIARELFESMPCRNISS-WNTMIT-----GYGQIGD 343

Query: 522 FA-AEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
            A A K + M P++   ++  ++  Y  SG  +EA  +   +++ G
Sbjct: 344 IAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDG 389


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 227/630 (36%), Positives = 363/630 (57%), Gaps = 22/630 (3%)

Query: 76  YTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDA 135
           Y +E +E  + D   +K S      +   V N R  EA  LFE    +  +D+ S  ++ 
Sbjct: 157 YVDEARE--VFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFES---KSDWDLIS--WNC 209

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           L+   +  + + + + +F  M       D    N ++  + + G +  ARRLFDE P R+
Sbjct: 210 LMGGFVRKKKLGDARWLFDKMPVR----DAISWNTMISGYAQGGGLSQARRLFDESPTRD 265

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL-H 254
           + +   +++G + +G   EA   F    +E  +    ++  MI      + + + ++L  
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFF----DEMPEKNEVSYNAMIAGYVQTKKMDIARELFE 321

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           S   +     N+     +I  Y + G I  A+  FD M ++  V W  IIAGYA  G+ E
Sbjct: 322 SMPCR-----NISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYE 376

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EAL+++ E++  G  ++  TF   +  C  +A+LE  KQ H   V+ G+G      +AL+
Sbjct: 377 EALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALL 436

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
             Y K G I++A   F+ +  K+V+SWN ++AGY  HG G +A+ +FE M   G++P+ +
Sbjct: 437 AMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEI 496

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           T + VLSACS +GL +RG E F SM++D+ + P + HY CMI+LLGR G L+EA  LIR 
Sbjct: 497 TMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRN 556

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            PF+     W ALL A R++GN ELG+ AAE ++ MEP+    YV+L N+Y +SG+  +A
Sbjct: 557 MPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDA 616

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
            ++   +R  G++ +P  SW+EV+ + H F  GD SH + + IY  ++ + L++ + GYV
Sbjct: 617 DKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYV 676

Query: 615 PEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLI 673
              K +L DV+E+E + +L YHSEKLAVAFG++      P++++++ R+C DCH+AIK I
Sbjct: 677 SLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHI 736

Query: 674 AMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + + GR I++RD+ RFHHF +G CSCGDYW
Sbjct: 737 SKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 90/406 (22%), Positives = 177/406 (43%), Gaps = 64/406 (15%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           +PD+   N+ +  H+R G    A  +F+ MP R+ VS N +I+G + +      F L  +
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRN----SKFNLARN 101

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           L+++  +    ++  M+        +   ++L     +     +V    +L+  Y++ G 
Sbjct: 102 LFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPE----KDVVSWNSLLSGYAQNGY 157

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           +++A+ VFD M EK ++ WN ++A Y  +G  EEA  L+    D                
Sbjct: 158 VDEAREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSD---------------- 201

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
                                   D+++ + L+  + +  ++ DAR +FDKM  ++ ISW
Sbjct: 202 -----------------------WDLISWNCLMGGFVRKKKLGDARWLFDKMPVRDAISW 238

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           N +I+GY   G   +A  LF++     +     T+ A++S   ++G+ +     F  M  
Sbjct: 239 NTMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVSGYVQNGMLDEAKTFFDEMPE 294

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
            +++      Y  MI    +   +D A  L    P +   + W  ++T     G  ++G 
Sbjct: 295 KNEVS-----YNAMIAGYVQTKKMDIARELFESMPCRNISS-WNTMIT-----GYGQIGD 343

Query: 522 FA-AEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
            A A K + M P++   ++  ++  Y  SG  +EA  +   +++ G
Sbjct: 344 IAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDG 389


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/577 (37%), Positives = 330/577 (57%), Gaps = 8/577 (1%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           STY   + + +    +   K++ S+ + +G   +  +   +  M+V+CG +  A  +F++
Sbjct: 112 STYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEK 171

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           M E+N V+   I+ G   +   ++A  LF  +  E  +     F+ +++A AGLE ++ G
Sbjct: 172 MSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFG 231

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           +Q+H   +K+G    V V   L+D Y KC ++E A   F+ +SE   V W+ +I GY   
Sbjct: 232 RQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQM 291

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G  EEAL  +  +R   V ++ FT++ I + C+ LA      QAHA  ++          
Sbjct: 292 GEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGE 351

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           SA++  YS+ GR++ A  VF+ +   + ++W A+IAGY   G   EA++LF +M   G+R
Sbjct: 352 SAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVR 411

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           PN VTF+AVL+ACS SGL   G +  +SMS ++ +     HY CM+++  R G L EA  
Sbjct: 412 PNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALE 471

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
           LIR  PF      W  LL  C    NLE+G+ AAE L+ ++PE  + Y+++ N+Y S GK
Sbjct: 472 LIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGK 531

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
            KEAA V + +  + LR   +CSWI VK + H F+ GD+ H QT+EIY K++ +   + K
Sbjct: 532 WKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEALNDSVIK 591

Query: 611 H--GYVPEE--KTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
              G + EE     LP+  EQ    L  HSE+LA+AFGLI+T    P+ + ++ R C DC
Sbjct: 592 EETGLLTEEDVSNSLPERKEQ----LLVHSERLALAFGLISTPSSAPVVVFKNLRACKDC 647

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           H+  K ++++TGREIVVRD+ RFHHFK G CSC DYW
Sbjct: 648 HDFGKQVSLITGREIVVRDSFRFHHFKLGECSCNDYW 684



 Score =  228 bits (581), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 143/480 (29%), Positives = 238/480 (49%), Gaps = 47/480 (9%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           + G  V   +Y  L  AC  ++S+ + +     M  T   P  ++ N VL M+ +CG + 
Sbjct: 3   DAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLA 62

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
           DAR++FDEM ERNLVS N II+   ++G + + F +F ++ E  +     T+   +R+  
Sbjct: 63  DARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLL 122

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
               + +GKQ+HS A++ G G N  V+ A+ +MY KCG +E A+ VF++MSEK  V W  
Sbjct: 123 NPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTG 182

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           I+ GY       +AL L+ +M + GV++D + FS++++ C  L  L   +Q H  +V+ G
Sbjct: 183 IMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLG 242

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
              ++   + LVDFY K   +E A   F+ +   N +SW+ALI GY   G  EEA++ FE
Sbjct: 243 LESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFE 302

Query: 423 QMLLNGMRPNHVTFLAVLSAC-----------------------------------SRSG 447
            +    +  N  T+ ++  AC                                   SR G
Sbjct: 303 SLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHGESAMITMYSRCG 362

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR---GAPFKTTKNMW 504
             +    +F+S+       P A+ +  +I     +G   EA  L R       +     +
Sbjct: 363 RLDYATRVFESID-----DPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTF 417

Query: 505 AALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            A+LTAC  +G +  G+   E +   YG+    + +Y  +++IY+ +G L+EA E+IR++
Sbjct: 418 IAVLTACSHSGLVIEGRQYLESMSSNYGV-ATTIDHYDCMVDIYSRAGFLQEALELIRSM 476


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/578 (36%), Positives = 347/578 (60%), Gaps = 5/578 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           Y EA+ LF  +  + G      T+  ++ A +GL      +++    ++TGF  D  + N
Sbjct: 225 YTEAIHLFLKMR-QSGHKPSDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGN 283

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
           ++L  + +   +++ R LF+EMPE + VS N++I+    +  Y E+  LF ++     D 
Sbjct: 284 QILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDR 343

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF-VSCALIDMYSKCGSIEDAQGV 288
            +  FATM+  +A L  + VG+Q+H C   +   D++  V  +L+DMY+KC   ++A+ +
Sbjct: 344 RNFPFATMLSIAANLSSLQVGRQVH-CQAIVATADSILHVGNSLVDMYAKCEMFDEAELI 402

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F  +S+++TV W  +I+GY   G     L L+ +MR + ++ D  TF+ +++     ASL
Sbjct: 403 FKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKASAGFASL 462

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
              KQ HA ++R G   ++ + S LVD Y+K G I+DA  VF++M  +N +SWNALI+ Y
Sbjct: 463 LLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAY 522

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
            ++G GE A+  F +M+ +G++P+ V+ L VL ACS  G  E+G E FQ+MS  + I P+
Sbjct: 523 ADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPK 582

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
             HYACM++LLGR G   EA  L+   PF+  + MW+++L ACR+  N  L + AAE+L+
Sbjct: 583 KKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLF 642

Query: 529 GMEP-EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
            ME     + YV + NIY ++GK +    V + +R +G++ +PA SW+EV  + HVF S 
Sbjct: 643 SMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRERGIKKVPAYSWVEVNHKIHVFSSN 702

Query: 588 DQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLI 646
           DQ+H    EI +K++ +  EI + GY P+  +++ D+DEQ +   L YHSE+LAVAF LI
Sbjct: 703 DQTHPNGDEIVKKINELTTEIEREGYKPDTSSVVQDIDEQMKIESLKYHSERLAVAFALI 762

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVR 684
           +T +  P+ ++++ R C DCH AIKLI+ +  R I  +
Sbjct: 763 STPEGCPIVVMKNLRACRDCHAAIKLISKIVKRVITTQ 800



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 207/420 (49%), Gaps = 16/420 (3%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL---- 187
           T+  L+  C        V +V ++ +  GF+ +L++    +L+   C    + RRL    
Sbjct: 143 TFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYC----EVRRLDLAC 198

Query: 188 --FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
             F+E+ +++ V+ N +I G    G Y EA  LFL + +        TF+ +++A  GL 
Sbjct: 199 VLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLH 258

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
             ++G+QLH  ++  GF  +  V   ++  YSK   + + + +F+EM E   V +N +I+
Sbjct: 259 DFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVIS 318

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH-AGLVRHGFG 364
            Y+     EE+L+L+ EM+  G    +F F+ ++ I   L+SL+  +Q H   +V     
Sbjct: 319 SYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATADS 378

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
           +  V NS LVD Y+K    ++A  +F  +  ++ +SW ALI+GY   G     ++LF +M
Sbjct: 379 ILHVGNS-LVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKM 437

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
               +R +  TF  VL A +       G ++   + R   ++      + ++++  + G 
Sbjct: 438 RGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLE-NVFSGSGLVDMYAKCGS 496

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLL 542
           + +A  +    P +   + W AL++A   NG+ E  +G F      G++P+ +S   VL+
Sbjct: 497 IKDAVQVFEEMPDRNAVS-WNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLI 555



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 221/505 (43%), Gaps = 80/505 (15%)

Query: 143 LRSIRE----VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVS 198
           LR +R+     +RV + ++ TGF  D    N  +   +R G +  A +++DEMP +N VS
Sbjct: 18  LRQLRQPPPATRRVDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVS 77

Query: 199 CNMIIAGMIDSGD-------------------------------YLEAFLLFLDLWEEFS 227
            N +I+G +  GD                               + EAF LF  +    +
Sbjct: 78  TNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCT 137

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC--ALIDMYSKCGSIEDA 285
                TF T++         +   Q+H+ A+K+GF  N+F++    L+  Y +   ++ A
Sbjct: 138 LPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLA 197

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
             +F+E+ +K +V +NT+I GY   G   EA+ L+ +MR SG K   FTFS +++    L
Sbjct: 198 CVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGL 257

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
                 +Q H   V  GF  D    + ++ FYSK  R+ + R++F++M   + +S+N +I
Sbjct: 258 HDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVI 317

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE----------- 454
           + Y    + EE++ LF +M   G    +  F  +LS  +     + G +           
Sbjct: 318 SSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAIVATAD 377

Query: 455 ------------------------IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
                                   IF+S+S+   +   A+    + + L   GL  + F 
Sbjct: 378 SILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGL--KLFT 435

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGK-FAAEKLYGMEPEKLSNYVVLLNIYNSSG 549
            +RGA  +  ++ +A +L A     +L LGK   A  +     E + +   L+++Y   G
Sbjct: 436 KMRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCG 495

Query: 550 KLKEAAEVIRTLRRKGLRMLPACSW 574
            +K+A +V   +  +      A SW
Sbjct: 496 SIKDAVQVFEEMPDRN-----AVSW 515


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/558 (39%), Positives = 337/558 (60%), Gaps = 11/558 (1%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMI-DARRLFDEMPERNLVSCNMIIAGMIDSGDYLE 214
           + S+   PD+   N ++    R    +  AR LFD MP+R+  + + +++G    G    
Sbjct: 85  LFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEA 144

Query: 215 AFLLFLDLWEEFSDCGSR---TFATMIRASAGLELISVGKQLHSCALKMGF----GDNVF 267
           A  L+  + EE  + G+    T ++ + A+A       G++LH   ++ G     GD V 
Sbjct: 145 ALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVL 204

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDS 326
            S AL DMY+KCG ++DA+ VFD M  +  V W  ++  Y   G   E   L+  M R  
Sbjct: 205 WS-ALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTR 263

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           GV+ + FT++ ++R C + A     +Q H  + + G G    A SAL+  YSK G +  A
Sbjct: 264 GVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSA 323

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
             VF+ M   +++SW A+I+GY  +G+ EEA+  F+  L +G++P+HVTF+ VLSAC+ +
Sbjct: 324 VRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHA 383

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           GL ++G EIF S+   + I+  A HYAC+I+LL R G  + A  +I     K  K +WA+
Sbjct: 384 GLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWAS 443

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           LL  CR++ N+ L + AAE L+ +EPE  + YV L NIY S G   E  +V R +  KG+
Sbjct: 444 LLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGI 503

Query: 567 RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-D 625
             +PA SWIEV ++ HVFL GD+SH +  EIY  + ++ +++ + GYV + + +L DV D
Sbjct: 504 TKMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHDVED 563

Query: 626 EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
           EQ+++ + YHSE+LAVAFG+I T + +P+++ ++ RIC DCH AIKLI+ +  R+I+VRD
Sbjct: 564 EQKEQDIGYHSERLAVAFGIIATPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRD 623

Query: 686 ASRFHHFKDGMCSCGDYW 703
           ++RFHHFKDG+CSC DYW
Sbjct: 624 SNRFHHFKDGICSCRDYW 641



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 94/230 (40%), Gaps = 5/230 (2%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + +E+     R  E   LF  +    G      TY  ++ AC         ++V   M  
Sbjct: 238 AMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAK 297

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           +G     +  + +L M+ +CG M  A R+F+ M + +LVS   +I+G   +G   EA   
Sbjct: 298 SGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRY 357

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL-HSCALKMGFGDNVFVSCALIDMYS 277
           F             TF  ++ A A   L+  G ++ HS   +            +ID+ S
Sbjct: 358 FDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLS 417

Query: 278 KCGSIEDAQGVFDEMSEKTT-VGWNTIIAGYALH---GYSEEALDLYYEM 323
           + G  E A+ +   M+ K     W +++ G  +H   G +  A +  +E+
Sbjct: 418 RSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEI 467


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/639 (33%), Positives = 362/639 (56%), Gaps = 67/639 (10%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD-- 189
           T   ++S+C   +++   +++ S+++  G    + +   +L M+ +CG  + A+ +FD  
Sbjct: 144 TVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRM 203

Query: 190 -----------------------------EMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
                                        +MP+R++VS N +I+G    G  LEA  +F 
Sbjct: 204 TVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFS 263

Query: 221 DLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKM------GFGD--------- 264
            +  E S    + T A+++ A A LE +++GKQ+H+  L+         G+         
Sbjct: 264 KMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKS 323

Query: 265 ------------------NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
                             N+    +L+D Y+K G+++ A+ +F+++ ++  V W  +I G
Sbjct: 324 GGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVG 383

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           Y  +G   +AL+L+  M + G + + +T + ++ + + L  LEH KQ HA  ++ G    
Sbjct: 384 YVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESST 443

Query: 367 IVANSALVDFYSKWGRIEDARHVFD-KMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
               +AL+  Y+K G I  A+ VFD     K ++SW ++I     HG G+EA+ LFE+ML
Sbjct: 444 PSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERML 503

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
             GM+P+H+T++ VLSAC+  GL E+G + +  M+  H+I+P   HYACMI+L GR GLL
Sbjct: 504 SVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLL 563

Query: 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
            EA+  I   P +     W +LL +C+++ N +L K AAE+L  ++P     Y+ L N+Y
Sbjct: 564 QEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVY 623

Query: 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
           ++ GK + AA+  + ++ +G+R     SWI +K + H F   D  H Q  EIY+ +  + 
Sbjct: 624 SACGKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIW 683

Query: 606 LEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICC 664
            EI K G++P+ +++L D++E+ ++++L YHSEKLA+AFGL+NT + T L+I+++ R+C 
Sbjct: 684 EEIKKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCN 743

Query: 665 DCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           DCH+AIK I+ + GREI+VRDA+RFHHFKDG CSC DYW
Sbjct: 744 DCHSAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 139/543 (25%), Positives = 233/543 (42%), Gaps = 115/543 (21%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYM-LSTGFEPDLYMRNRVLLMHVRCGMMID 183
           G  +G    + L++      S+R    VF  M L + F       N ++  + + G    
Sbjct: 40  GLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFS-----WNTLISGYAKQGNFEV 94

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           +RRL  EMP+ + VS   II G    G +  A  +F  +  E       T + ++ + A 
Sbjct: 95  SRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAA 154

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS---------- 293
            + + +G+++HS  +K+G G  V V+ +L++MY+KCG    A+ VFD M+          
Sbjct: 155 NQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNAL 214

Query: 294 ---------------------EKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMD 331
                                ++  V WN++I+GY+  GY+ EAL ++ +M  +  +K D
Sbjct: 215 ISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPD 274

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVR------------------------------- 360
           +FT + I+  C  L  L   KQ HA ++R                               
Sbjct: 275 NFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVE 334

Query: 361 --HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
                 L+I+A ++L+D Y+K G ++ AR +F+K+  ++V++W A+I GY  +G   +A+
Sbjct: 335 HNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDAL 394

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM------------------- 459
           ELF  M+  G  PN  T  A+LS  S   + E G +I  S                    
Sbjct: 395 ELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMY 454

Query: 460 SRDHKI------------KPRAMHYACMIELLGREGLLDEAFALIR---GAPFKTTKNMW 504
           ++   I            K   + +  MI  L + GL  EA  L         K     +
Sbjct: 455 AKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITY 514

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPE------KLSNYVVLLNIYNSSGKLKEAAEVI 558
             +L+AC   G +E G+    K Y M  E       LS+Y  ++++Y  +G L+EA   I
Sbjct: 515 VGVLSACTHVGLVEQGR----KYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFI 570

Query: 559 RTL 561
            ++
Sbjct: 571 ESM 573



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 171/379 (45%), Gaps = 53/379 (13%)

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
           S   S  FA +++ S  ++    G+ +H   +K G    V++   L+  Y+K GS+  A 
Sbjct: 6   SPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAH 65

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG------------------- 327
            VFDEM  K+T  WNT+I+GYA  G  E +  L YEM D                     
Sbjct: 66  HVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDN 125

Query: 328 ------------VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
                       V    FT S ++  C    +L+  ++ H+ +V+ G G  +   ++L++
Sbjct: 126 AIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLN 185

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-- 433
            Y+K G    A+ VFD+M  KN+ +WNALI+ Y   G+ E A   FE+M      P+   
Sbjct: 186 MYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKM------PDRDI 239

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL---LGREGLLDEAFA 490
           V++ +++S  S+ G +     IF  M  +  +KP     A ++     L +  +  +  A
Sbjct: 240 VSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHA 299

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN-----YVVLLNIY 545
            I  A  +T+  +  AL++    +G +E+ +   E        + SN     +  LL+ Y
Sbjct: 300 YILRAETETSGAVGNALISMYAKSGGVEIARLIVEH------NRTSNLNIIAFTSLLDGY 353

Query: 546 NSSGKLKEAAEVIRTLRRK 564
              G +K A E+   LR +
Sbjct: 354 TKLGNVKPAREIFNKLRDR 372


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/615 (37%), Positives = 360/615 (58%), Gaps = 16/615 (2%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACI--GLRSIREVKRVFSYM 156
           + +  L  N R  +A+ L   +  EG     + T  +++  C+  G R++  V  V  Y 
Sbjct: 138 AMLSGLCRNTRAADAVTLLGRMVGEG-VAGDAVTLSSVLPMCVVLGDRALALVMHV--YA 194

Query: 157 LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF 216
           +  G   +L++ N ++ ++ + GM+ +A  +F  M  R+LV+ N II+     G    A 
Sbjct: 195 VKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAV 254

Query: 217 LLFLDLWEEFSDCGSRTFATMIRASA--GLELISVGKQLHSCALKMGF--GDNVFVSCAL 272
            LF  + E        T  ++  A A  G EL +  K +H    + G+  GD +    A+
Sbjct: 255 ELFHGMMESGVCPDVLTLVSLASAVAQCGDELGA--KSVHCYVRRRGWDVGD-IIAGNAM 311

Query: 273 IDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMD 331
           +DMY+K   I+ AQ VFD + ++  V WNT+I GY  +G + EA+ +Y +M +  G+K  
Sbjct: 312 VDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPI 371

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
             TF  ++   + L  L+   + HA  ++ G  LD+   + L+D Y+K G++ +A  +F+
Sbjct: 372 QGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFE 431

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
            M  ++   WNA+IAG G HG G +A+ LF QM    ++P+HVTF+++L+ACS +GL ++
Sbjct: 432 HMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQ 491

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
           G   F  M   + I P A HY CM+++LGR G LDEAF  I+  P K    +W ALL AC
Sbjct: 492 GRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGAC 551

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           R++GN+E+GK A++ L+ ++PE +  YV++ N+Y   GK      V   +RR+ L+  P 
Sbjct: 552 RIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPG 611

Query: 572 CSWIEVKKQPHVFLSGDQS--HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE- 628
            S +EVK    VF SG Q+  H Q +EI R +  ++ ++   GYVP+   +L DV+E E 
Sbjct: 612 WSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEK 671

Query: 629 QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
           +++L+ HSE+LA+AFG+INT   TPL I ++ R+C DCH+A K I+ +T REI+VRDA+R
Sbjct: 672 EQILNNHSERLAIAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANR 731

Query: 689 FHHFKDGMCSCGDYW 703
           FHHFKDG CSCGD+W
Sbjct: 732 FHHFKDGHCSCGDFW 746



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 200/390 (51%), Gaps = 8/390 (2%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGF-EPDLYMRNRVLLMHVRCGMMIDARRLF 188
           S T+  L+ A  G  S     ++ +  L  G   P+++    ++  ++R G + +A R+F
Sbjct: 69  SFTFPPLVRAAPGPAS---AAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVF 125

Query: 189 DEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS 248
           DEMPER++ + N +++G+  +    +A  L   +  E     + T ++++     L   +
Sbjct: 126 DEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRA 185

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           +   +H  A+K G    +FV  ALID+Y K G + +A  VF  M+ +  V WN+II+   
Sbjct: 186 LALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANE 245

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL-DI 367
             G    A++L++ M +SGV  D  T   +     +      AK  H  + R G+ + DI
Sbjct: 246 QGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDI 305

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
           +A +A+VD Y+K  +I+ A+ VFD +  ++V+SWN LI GY  +G   EA+ ++  M  +
Sbjct: 306 IAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNH 365

Query: 428 -GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
            G++P   TF++VL A S  G  ++G  +  ++S    +        C+I+L  + G L 
Sbjct: 366 EGLKPIQGTFVSVLPAYSYLGGLQQGMRM-HALSIKTGLNLDVYVTTCLIDLYAKCGKLV 424

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGN 516
           EA  L    P ++T   W A++    V+G+
Sbjct: 425 EAMFLFEHMPRRST-GPWNAIIAGLGVHGH 453



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 171/357 (47%), Gaps = 39/357 (10%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGF-GDNVFVSCALIDMYSKCGSIEDAQGVF 289
           S TF  ++RA+ G    +   QLH+CAL++G    NVF S +L+  Y + G + +A  VF
Sbjct: 69  SFTFPPLVRAAPG---PASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVF 125

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           DEM E+    WN +++G   +  + +A+ L   M   GV  D  T S ++ +C  L    
Sbjct: 126 DEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRA 185

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
            A   H   V+HG   ++   +AL+D Y K G + +A  VF  M  +++++WN++I+   
Sbjct: 186 LALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANE 245

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG-----------LSERGWEIFQS 458
             G+   AVELF  M+ +G+ P+ +T +++ SA ++ G           +  RGW++   
Sbjct: 246 QGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDI 305

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           ++ +            M+++  +   +D A  +    P +   + W  L+T    NG   
Sbjct: 306 IAGN-----------AMVDMYAKMSKIDAAQKVFDNLPDRDVVS-WNTLITGYMQNGLAN 353

Query: 519 LGKFAAEKLY-------GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
                A ++Y       G++P +   +V +L  Y+  G L++   +     + GL +
Sbjct: 354 ----EAIRIYNDMHNHEGLKPIQ-GTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNL 405


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/607 (35%), Positives = 360/607 (59%), Gaps = 4/607 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S +   + N  Y EALE F  L+          +  ++I A   L  +   K + +Y + 
Sbjct: 231 SMLTGFIQNGLYSEALEFFYDLQ-NADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIK 289

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF+ ++ + N ++ M+ +C  M    R FD M  ++L+S     AG   +  YL+A  L
Sbjct: 290 NGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALEL 349

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
              L  E  D  +    +++ A  GL  +   K++H   ++ G  D V  +  +ID+Y +
Sbjct: 350 LRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQN-TIIDVYGE 408

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG I+ A  +F+ +  K  V W ++I+ Y  +G + +AL+++  M+++G++ D+ T   I
Sbjct: 409 CGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSI 468

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +     L++L+  K+ H  ++R GF L+   ++ LVD Y++ G +EDA  +F     +N+
Sbjct: 469 LSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNL 528

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           I W A+I+ YG HG GE AVELF +M    + P+H+TFLA+L ACS SGL   G    + 
Sbjct: 529 ILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEI 588

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M  +++++P   HY C+++LLGR   L+EA+ +++    + T  +W ALL ACR++ N E
Sbjct: 589 MKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKE 648

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           +G+ AAEKL  ++ +   NYV++ N++ ++G+ K+  EV   ++  GL   P CSWIEV 
Sbjct: 649 IGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVG 708

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH-GYVPEEKTLLPDVDEQEQRVLSY-HS 636
            + H FLS D+ H +  +IY+K+ ++  ++ +  GYV + K +L +V E+E+  + Y HS
Sbjct: 709 NKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEKVQMLYGHS 768

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           E+LA+A+GL+ T++ TP+++ ++ R+C DCH+   L++    RE++VRDASRFHHFKDGM
Sbjct: 769 ERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDGM 828

Query: 697 CSCGDYW 703
           CSCGD+W
Sbjct: 829 CSCGDFW 835



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/478 (27%), Positives = 229/478 (47%), Gaps = 21/478 (4%)

Query: 95  AGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFS 154
            G  S  E L   + YRE   L        G    S T+  L+ AC  +  +     +  
Sbjct: 31  GGYVSNGEALGALEMYREMRHL--------GVSFDSYTFPVLLKACGIVEDLFCGAEIHG 82

Query: 155 YMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN-LVSCNMIIAGMIDSGDYL 213
             +  G +  +++ N ++ ++ +C  +  AR+LFD M  RN +VS N II+    +G   
Sbjct: 83  LAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCT 142

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA  LF ++ +      + TFA  ++A      I +G Q+H+  LK G   +V+V+ AL+
Sbjct: 143 EALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALV 202

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
            MY + G + +A  +F  +  K  V WN+++ G+  +G   EAL+ +Y+++++ +K D  
Sbjct: 203 AMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQV 262

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           +   II    RL  L + K+ HA  +++GF  +I+  + L+D Y+K   +      FD M
Sbjct: 263 SIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLM 322

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             K++ISW    AGY  +    +A+EL  Q+ + GM  +     ++L AC       +  
Sbjct: 323 AHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIK 382

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           EI     R     P   +   +I++ G  G++D A  +      K   + W ++++    
Sbjct: 383 EIHGYTIRGGLSDPVLQN--TIIDVYGECGIIDYAVRIFESIECKDVVS-WTSMISCYVH 439

Query: 514 NG--NLELGKFAAEKLYGMEPEKLSNYVVLLNIYN---SSGKLKEAAEVIRTLRRKGL 566
           NG  N  L  F++ K  G+EP+    YV L++I +   S   LK+  E+   + RKG 
Sbjct: 440 NGLANKALEVFSSMKETGLEPD----YVTLVSILSAVCSLSTLKKGKEIHGFIIRKGF 493



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 163/283 (57%), Gaps = 1/283 (0%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+ +CG ++DA  +FD+M ER++ + N ++ G + +G+ L A  ++ ++        S T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
           F  +++A   +E +  G ++H  A+K G    VFV  +L+ +Y+KC  I  A+ +FD M 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 294 EKT-TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            +   V WN+II+ Y+ +G   EAL L+ EM  +GV  + +TF+  ++ C   + ++   
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           Q HA +++ G  LD+   +ALV  Y ++G++ +A  +F  +  K++++WN+++ G+  +G
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
              EA+E F  +    ++P+ V+ ++++ A  R G    G EI
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEI 283



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 151/279 (54%), Gaps = 7/279 (2%)

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MY KCGS+ DA+ +FD+MSE++   WN ++ GY  +G +  AL++Y EMR  GV  D +T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           F ++++ C  +  L    + H   +++G    +   ++LV  Y+K   I  AR +FD+M 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 395 CKN-VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
            +N V+SWN++I+ Y  +G   EA+ LF +ML  G+  N  TF A L AC  S   + G 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           +I  ++ +  ++    +  A ++ +  R G + EA A+I G         W ++LT    
Sbjct: 181 QIHAAILKSGRVLDVYVANA-LVAMYVRFGKMPEA-AVIFGNLEGKDIVTWNSMLTGFIQ 238

Query: 514 NGNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKL 551
           NG   L   A E  Y ++   L  + V +++I  +SG+L
Sbjct: 239 NG---LYSEALEFFYDLQNADLKPDQVSIISIIVASGRL 274


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/612 (35%), Positives = 365/612 (59%), Gaps = 12/612 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I     N    EAL + + ++ E    + + T  +++  C     +     V  Y++ 
Sbjct: 218 AMISGFCQNGNVAEALRVLDRMKTEE-VKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIK 276

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G E D+++ N ++ M+ + G + DA+R+FD M  R+LVS N IIA    + D + A   
Sbjct: 277 HGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTA--- 333

Query: 219 FLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGFGD-NVFVSCALI 273
            L  ++E    G R    T  ++      L    +G+ +H   ++  + + ++ +  AL+
Sbjct: 334 -LGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALV 392

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS-GVKMDH 332
           +MY+K GSI+ A+ VF+++  +  + WNT+I GYA +G + EA+D Y  M +   +  + 
Sbjct: 393 NMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQ 452

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
            T+  I+   + + +L+   + H  L+++   LD+   + L+D Y K GR+EDA  +F +
Sbjct: 453 GTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYE 512

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           +  +  + WNA+I+  G HG GE+A++LF+ M  +G++ +H+TF+++LSACS SGL +  
Sbjct: 513 IPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEA 572

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACR 512
              F +M ++++IKP   HY CM++L GR G L++A+ L+   P +   ++W  LL ACR
Sbjct: 573 QWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACR 632

Query: 513 VNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPAC 572
           ++GN ELG FA+++L  ++ E +  YV+L NIY + GK + A +V    R +GLR  P  
Sbjct: 633 IHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGW 692

Query: 573 SWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRV 631
           S + V     VF +G+QSH Q  EIY ++  +  ++   GYVP+   +L DV+E E + +
Sbjct: 693 SSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEEDEKEEI 752

Query: 632 LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHH 691
           L+ HSE+LA+ FG+I+T   +P++I ++ R+C DCHNA K I+ +T REI+VRD++RFHH
Sbjct: 753 LTSHSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNRFHH 812

Query: 692 FKDGMCSCGDYW 703
           FKDG+CSCGDYW
Sbjct: 813 FKDGICSCGDYW 824



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 138/471 (29%), Positives = 250/471 (53%), Gaps = 12/471 (2%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S +   V   RYR++++    L    G      T+  ++ AC+   S+ + +++  ++L 
Sbjct: 119 SMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACL---SLADGEKMHCWVLK 175

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GFE D+Y+   ++ ++ R G +  A ++F +MP R++ S N +I+G   +G+  EA  +
Sbjct: 176 MGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRV 235

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
              +  E     + T ++M+   A    +  G  +H   +K G   +VFVS ALI+MYSK
Sbjct: 236 LDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSK 295

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            G ++DAQ VFD M  +  V WN+IIA Y  +     AL  + EM   G++ D  T   +
Sbjct: 296 FGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSL 355

Query: 339 IRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
             I  +L+     +  H  +VR     +DIV  +ALV+ Y+K G I+ AR VF+++  ++
Sbjct: 356 ASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRD 415

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNG--MRPNHVTFLAVLSACSRSGLSERGWEI 455
           VISWN LI GY  +G   EA++ +  M+  G  + PN  T++++L A S  G  ++G +I
Sbjct: 416 VISWNTLITGYAQNGLASEAIDAY-NMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKI 474

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
              + ++  +        C+I++ G+ G L++A +L    P + T   W A++++  ++G
Sbjct: 475 HGRLIKN-CLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIP-QETSVPWNAIISSLGIHG 532

Query: 516 NLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           + E  L  F   +  G++ + ++ +V LL+  + SG + EA     T++++
Sbjct: 533 HGEKALQLFKDMRADGVKADHIT-FVSLLSACSHSGLVDEAQWCFDTMQKE 582



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 216/424 (50%), Gaps = 23/424 (5%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           +I   K++ + +L  G   D+ +  +++ ++   G +  +   F  +  +N+ S N +++
Sbjct: 63  NINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVS 122

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKM 260
             +  G Y ++     +L    S  G R    TF  +++A   L   + G+++H   LKM
Sbjct: 123 AYVRRGRYRDSMDCVTEL---LSLSGVRPDFYTFPPVLKACLSL---ADGEKMHCWVLKM 176

Query: 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY 320
           GF  +V+V+ +LI +YS+ G++E A  VF +M  +    WN +I+G+  +G   EAL + 
Sbjct: 177 GFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVL 236

Query: 321 YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380
             M+   VKMD  T S ++ IC +   +      H  +++HG   D+  ++AL++ YSK+
Sbjct: 237 DRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKF 296

Query: 381 GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
           GR++DA+ VFD M  ++++SWN++IA Y  +     A+  F++ML  GMRP+ +T +++ 
Sbjct: 297 GRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLA 356

Query: 441 SACSRSGLSER--GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK 498
           S   +  LS+R  G  +   + R   ++   +    ++ +  + G +D A A+    P +
Sbjct: 357 SIFGQ--LSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSR 414

Query: 499 TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL-----SNYVVLLNIYNSSGKLKE 553
              + W  L+T    NG   L   A +    ME  +        +V +L  Y+  G L++
Sbjct: 415 DVIS-WNTLITGYAQNG---LASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQ 470

Query: 554 AAEV 557
             ++
Sbjct: 471 GMKI 474


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/576 (36%), Positives = 343/576 (59%), Gaps = 3/576 (0%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           STY  L+  C   +++ E KRV S ++  G+  D  + N ++ M+ +CG + +AR +FD+
Sbjct: 25  STYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQ 84

Query: 191 MPERN--LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS 248
           + E+N  ++S N II     +G   EA  LF  +  E       T    I A A L    
Sbjct: 85  IQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEE 144

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
            G+ +H+ A+      +  V  +L++M+ KC +++ A+ VFD +  K  V WN ++A Y+
Sbjct: 145 EGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYS 204

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
            +   ++A+ ++  M   GV+ D  TF  II  C  LA+    +  H  +   G  +D+ 
Sbjct: 205 QNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVA 264

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             +A++ FY K GR+++AR +FD +  KN ++W+A++A Y  +G   EA+EL+ +M+  G
Sbjct: 265 LGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGG 324

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           +  N +TFL +L ACS +G S  G + F SM RD  + P   HY  +I+LLGR G L  +
Sbjct: 325 LEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLS 384

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
             LI   P++   + W ALL ACR++G+++ G   AE +Y ++PE    Y++L N+Y+S+
Sbjct: 385 EDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLYSST 444

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           G++ EA    + +R +G+   P  S IEVK + H F++  + H Q   I+ +++R+   +
Sbjct: 445 GRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKARV 504

Query: 609 SKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
            + GYV + + +L DV+E+E +++L YHSE+LA+AFGLI+T   T L IV++ R+C DCH
Sbjct: 505 KEAGYVADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVCFDCH 564

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            A+K I+ V GR+IVVRDA RFHHF++G CSCGDYW
Sbjct: 565 AAVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 111/231 (48%), Gaps = 14/231 (6%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N + ++A+++F  ++ EG     + T+  +I AC  L +  E + V   + ++G   D+ 
Sbjct: 206 NWQCKKAIQVFRFMDLEG-VQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVA 264

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   V+  + +CG + +AR +FD + ++N V+ + I+A    +G   EA  L+ ++ +  
Sbjct: 265 LGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGG 324

Query: 227 SDCGSRTFATMIRA--SAGLELISVGKQLHSCALKMGFG-DNVFVS-CALIDMYSKCGSI 282
            +    TF  ++ A   AG  +  V    +  ++   FG   VF     LID+  + G +
Sbjct: 325 LEVNGITFLGLLFACSHAGRSMDGVD---YFVSMIRDFGVVPVFEHYLNLIDLLGRSGQL 381

Query: 283 EDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEA---LDLYYEM--RDSG 327
           + ++ + + M  E  +  W  ++    +HG  +      +L YE+   DSG
Sbjct: 382 QLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSG 432


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/607 (35%), Positives = 367/607 (60%), Gaps = 4/607 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S +   V N  Y EAL+ +  +  + G         ++I+A     +     ++ +Y + 
Sbjct: 389 SMLSGFVQNGLYHEALQFYHEMR-DAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMK 447

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G + DL + N ++ M+ +   M     +FD+MP++++VS   IIAG   +G +  A  L
Sbjct: 448 NGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALEL 507

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F ++  E  D      ++++ A +GL+LIS  K++HS  ++ G  D V  +  ++D+Y +
Sbjct: 508 FREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQN-GIVDVYGE 566

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG+++ A  +F+ +  K  V W ++I+ Y  +G + EAL+L++ M+++GV+ D  +   I
Sbjct: 567 CGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSI 626

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +     L++L+  K+ H  L+R GF L+    S LVD Y++ G +E +R+VF+ +  K++
Sbjct: 627 LSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDL 686

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           + W ++I  YG HG G  A++LF +M    + P+H+ F+AVL ACS SGL   G    +S
Sbjct: 687 VLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLES 746

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M  +++++P   HY C+++LLGR   L+EA+  ++G   + T  +W ALL AC+++ N E
Sbjct: 747 MKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKE 806

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           LG+ AA+KL  M+PE   NYV++ N+Y +  + K+  EV   ++  GL+  P CSWIEV 
Sbjct: 807 LGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVG 866

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH-GYVPEEKTLLPDVDEQEQRVLSY-HS 636
            + H F++ D+SH Q+ EIY K+ ++  +++K  GYV + K +L +  E+E+  + Y HS
Sbjct: 867 NKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHS 926

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           E+LA+A+G++ T +   L+I ++ R+C DCHN  KLI+    RE+V+RDA+RFHHFK G+
Sbjct: 927 ERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGV 986

Query: 697 CSCGDYW 703
           CSCGD W
Sbjct: 987 CSCGDVW 993



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 138/471 (29%), Positives = 237/471 (50%), Gaps = 8/471 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I   V N     +LEL+  +   G   + + T+  ++ AC  L+  R    V    + 
Sbjct: 186 AMIGAYVTNGEPLGSLELYREMRVSG-IPLDACTFPCILKACGLLKDRRCGAEVHGLAIK 244

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER-NLVSCNMIIAGMIDSGDYLEAFL 217
            G+   +++ N ++ M+ +C  +  AR+LFD MPE+ ++VS N +I+    +G  +EA  
Sbjct: 245 EGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALR 304

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           LF ++ +      + TF   ++A      I  G  +H+  LK  +  NVFV+ ALI MY+
Sbjct: 305 LFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYA 364

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           + G + +A  +F  M +  T+ WN++++G+  +G   EAL  Y+EMRD+G K D      
Sbjct: 365 RFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVIS 424

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           II    R  +  +  Q HA  +++G   D+   ++LVD Y+K+  ++    +FDKM  K+
Sbjct: 425 IIAASARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKD 484

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           V+SW  +IAG+  +G    A+ELF ++ L G+  + +   ++L ACS   L     EI  
Sbjct: 485 VVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHS 544

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG-- 515
            + R  K     +    ++++ G  G +D A  +     FK   + W ++++    NG  
Sbjct: 545 YIIR--KGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVS-WTSMISCYVHNGLA 601

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           N  L  F   K  G+EP+ +S  V +L+   S   LK+  E+   L RKG 
Sbjct: 602 NEALELFHLMKETGVEPDSIS-LVSILSAAASLSALKKGKEIHGFLIRKGF 651



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 219/394 (55%), Gaps = 9/394 (2%)

Query: 66  LKPRPKPNKIY-TEELKESSLPDTQMKKPSA-GICSQIEKLVLNKRYREALELFEILEFE 123
           L   P   KI+    LK S  P   ++ PS   IC   ++  +N+ ++   +LF   +  
Sbjct: 53  LNCHPVLKKIHQNPPLKISKFPLKPVETPSLREIC---KRGSVNEAFQSLTDLFAN-QSP 108

Query: 124 GGFDVGSSTYDALISACIGLRSIREVKRVFSYML-STGFEPDLYMRNRVLLMHVRCGMMI 182
             F +  + Y +++  C   +++ E ++V ++M+ S      +++  R++ M+ +CG ++
Sbjct: 109 SQFSLDEA-YSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 167

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
           DA +LFD MP + + + N +I   + +G+ L +  L+ ++        + TF  +++A  
Sbjct: 168 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACG 227

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWN 301
            L+    G ++H  A+K G+   VFV+ +++ MY+KC  +  A+ +FD M EK   V WN
Sbjct: 228 LLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWN 287

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           ++I+ Y+ +G S EAL L+ EM+ + +  + +TF   ++ C   + ++     HA +++ 
Sbjct: 288 SMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKS 347

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
            + +++   +AL+  Y+++G++ +A ++F  M   + ISWN++++G+  +G   EA++ +
Sbjct: 348 SYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFY 407

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
            +M   G +P+ V  +++++A +RSG +  G +I
Sbjct: 408 HEMRDAGQKPDLVAVISIIAASARSGNTLNGMQI 441


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 237/629 (37%), Positives = 354/629 (56%), Gaps = 41/629 (6%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +EA+ LF  +  E G +    T   +ISAC  L+ +   K+V SY+   G E    M N 
Sbjct: 213 KEAVSLFFQMG-EAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNA 271

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ M+++CG +  AR++FDE   +NLV  N I++  +   ++    L+ LD   E    G
Sbjct: 272 LVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHH-EWASDVLVILD---EMLQKG 327

Query: 231 SR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            R    T  + I A A L  +SVGK  H+  L+ G      +S A+IDMY KCG  E A 
Sbjct: 328 PRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAAC 387

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHG-------------------------------YSEE 315
            VF+ M  KT V WN++IAG    G                                 EE
Sbjct: 388 KVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEE 447

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           A++L+ EM++ G+  D  T   I   C  L +L+ AK     + ++   +D+   +ALVD
Sbjct: 448 AIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVD 507

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            +S+ G    A HVF +M  ++V +W A I      G  E A+ELF +ML   ++P+ V 
Sbjct: 508 MFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVV 567

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
           F+A+L+ACS  G  ++G ++F SM + H I+P  +HY CM++LLGR GLL+EA  LI+  
Sbjct: 568 FVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSM 627

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           P +    +W +LL ACR + N+EL  +AAEKL  + PE++  +V+L NIY S+GK  + A
Sbjct: 628 PIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVA 687

Query: 556 EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
            V   ++ KG++ +P  S IEV+   H F SGD+SH +   I   ++ +   +S+ GYVP
Sbjct: 688 RVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVP 747

Query: 616 EEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
           +   +L DVDEQE + +LS HSEKLA+A+GLI T    P+++V++ R+C DCH+  KL++
Sbjct: 748 DTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRVVKNLRMCSDCHSFAKLVS 807

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            +  REI VRD +R+H FK+G CSC DYW
Sbjct: 808 KLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 222/435 (51%), Gaps = 16/435 (3%)

Query: 141 IGLRSIREVKRVFSYMLSTGF---EPDLYMRNRVLLMHVRCGMM--ID-ARRLF--DEMP 192
           +  ++++E+K++   M+  G    +P   + N+++   V+ G +  +D AR  F  D+  
Sbjct: 33  VNCKTLKELKQLHCDMMKKGLLCHKPASNL-NKLIASSVQIGTLESLDYARNAFGDDDGN 91

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
             +L   N +I G   +G   +A LL++ +          TF  ++ A + +  +S G Q
Sbjct: 92  MASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSACSKILALSEGVQ 151

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H   LKMG   ++FVS +LI  Y++CG ++  + +FD M E+  V W ++I GY+    
Sbjct: 152 VHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDL 211

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
           S+EA+ L+++M ++GV+ +  T   +I  C +L  LE  K+  + +   G  L  +  +A
Sbjct: 212 SKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNA 271

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           LVD Y K G I  AR +FD+   KN++ +N +++ Y +H    + + + ++ML  G RP+
Sbjct: 272 LVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPD 331

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            VT L+ ++AC++ G    G      + R+       +  A +I++  + G  + A  + 
Sbjct: 332 KVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNA-IIDMYMKCGKREAACKVF 390

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG-MEPEKLSNYVVLLNIYNSSGKL 551
              P KT    W +L+     +G++EL    A +++  M    L ++  ++         
Sbjct: 391 EHMPNKTVVT-WNSLIAGLVRDGDMEL----AWRIFDEMLERDLVSWNTMIGALVQVSMF 445

Query: 552 KEAAEVIRTLRRKGL 566
           +EA E+ R ++ +G+
Sbjct: 446 EEAIELFREMQNQGI 460


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/607 (35%), Positives = 368/607 (60%), Gaps = 4/607 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S +   V N  Y EAL+ +  +  + G         ++I+A     +     ++ +Y + 
Sbjct: 353 SMLSGFVQNGLYHEALQFYHEMR-DAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMK 411

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G + DL + N ++ M+ +   M     +FD+MP++++VS   IIAG   +G +  A  L
Sbjct: 412 NGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALEL 471

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F ++  E  D      ++++ A +GL+LIS  K++HS  ++ G  D V  +  ++D+Y +
Sbjct: 472 FREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQN-GIVDVYGE 530

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG+++ A  +F+ +  K  V W ++I+ Y  +G + EAL+L++ M+++GV+ D  +   I
Sbjct: 531 CGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISLVSI 590

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +     L++L+  K+ H  L+R GF L+    S LVD Y++ G +E +R+VF+ +  K++
Sbjct: 591 LSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDL 650

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           + W ++I  YG HG G  A++LF +M    + P+H+ F+AVL ACS SGL   G    +S
Sbjct: 651 VLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLES 710

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M  +++++P   HYAC+++LLGR   L+EA+  ++G   + T  +W ALL AC+++ N E
Sbjct: 711 MKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKE 770

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           LG+ AA+KL  M+PE   NYV++ N+Y++  + K+   V   ++  GL+  P CSWIEV 
Sbjct: 771 LGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVG 830

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH-GYVPEEKTLLPDVDEQEQRVLSY-HS 636
            + H F++ D+SH Q+ EIY K+ ++  +++K  GYV + K +L +  E+E+  + Y HS
Sbjct: 831 NKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHS 890

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           E+LA+A+G++ T +   L+I ++ R+C DCHN  KLI+    RE+V+RDA+RFHHFK G+
Sbjct: 891 ERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGV 950

Query: 697 CSCGDYW 703
           CSCGD W
Sbjct: 951 CSCGDVW 957



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 139/471 (29%), Positives = 237/471 (50%), Gaps = 8/471 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I   V N     +LEL+  +   G   + + T+  ++ AC  L+  R    V    + 
Sbjct: 150 AMIGAYVTNGEPLGSLELYREMRVSG-IPLDACTFPCILKACGLLKDRRYGAEVHGLAIK 208

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER-NLVSCNMIIAGMIDSGDYLEAFL 217
            G+   +++ N ++ M+ +C  +  AR+LFD MPE+ ++VS N +I+    +G  +EA  
Sbjct: 209 EGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALR 268

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           LF ++ +      + TF   ++A      I  G  +H+  LK  +  NVFV+ ALI MY+
Sbjct: 269 LFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYA 328

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           + G + +A  +F  M +  T+ WN++++G+  +G   EAL  Y+EMRD+G K D      
Sbjct: 329 RFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVIS 388

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           II    R  +  H  Q HA  +++G   D+   ++LVD Y+K+  ++    +FDKM  K+
Sbjct: 389 IIAASARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKD 448

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           V+SW  +IAG+  +G    A+ELF ++ L G+  + +   ++L ACS   L     EI  
Sbjct: 449 VVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHS 508

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG-- 515
            + R  K     +    ++++ G  G +D A  +     FK   + W ++++    NG  
Sbjct: 509 YIIR--KGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVS-WTSMISCYVHNGLA 565

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           N  L  F   K  G+EP+ +S  V +L+   S   LK+  E+   L RKG 
Sbjct: 566 NEALELFHLMKETGVEPDSIS-LVSILSAAASLSALKKGKEIHGFLIRKGF 615



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 219/394 (55%), Gaps = 9/394 (2%)

Query: 66  LKPRPKPNKIY-TEELKESSLPDTQMKKPSA-GICSQIEKLVLNKRYREALELFEILEFE 123
           L   P   KI+    LK S  P   ++ PS   IC   ++  +N+ ++   +LF   +  
Sbjct: 17  LNCHPVLKKIHQNPPLKISKFPLKPVETPSLREIC---KRGSVNEAFQSLTDLFAN-QSP 72

Query: 124 GGFDVGSSTYDALISACIGLRSIREVKRVFSYML-STGFEPDLYMRNRVLLMHVRCGMMI 182
             F +  + Y +++  C   +++ E ++V ++M+ S      +++  R++ M+ +CG ++
Sbjct: 73  SQFSLDEA-YSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLV 131

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
           DA +LFD MP + + + N +I   + +G+ L +  L+ ++        + TF  +++A  
Sbjct: 132 DAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACG 191

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWN 301
            L+    G ++H  A+K G+   VFV+ +++ MY+KC  +  A+ +FD M EK   V WN
Sbjct: 192 LLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWN 251

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           ++I+ Y+ +G S EAL L+ EM+ + +  + +TF   ++ C   + ++     HA +++ 
Sbjct: 252 SMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKS 311

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
            + +++   +AL+  Y+++G++ +A ++F  M   + ISWN++++G+  +G   EA++ +
Sbjct: 312 SYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFY 371

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
            +M   G +P+ V  +++++A +RSG +  G +I
Sbjct: 372 HEMRDAGQKPDLVAVISIIAASARSGNTLHGMQI 405


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/613 (36%), Positives = 359/613 (58%), Gaps = 34/613 (5%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC------ 178
           G    S T+  L+ +C   ++  E +++   +L  GF+ DLY+   ++ M+V+       
Sbjct: 59  GLLPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDA 118

Query: 179 -------------------------GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
                                    G +  A++LFDE+P +++VS N +I+G  ++G Y 
Sbjct: 119 YKVFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYK 178

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA  LF ++ +        T+ T++ A A    I +G+Q+HS     GF  N+ +  ALI
Sbjct: 179 EALELFEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALI 238

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           D+YSKCG +E A G+F  +S K  + WNT+I GY      +EAL L+ EM  SG   +  
Sbjct: 239 DLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 298

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN--SALVDFYSKWGRIEDARHVFD 391
           T   ++  C  L +++  +  H  + +   G+   ++  ++L+D Y+K G IE A  VF+
Sbjct: 299 TMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFN 358

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
            ML K++ SWNA+I G+  HGR + + +LF +M   G+ P+ +TF+ +LSACS SG+ + 
Sbjct: 359 SMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDL 418

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
           G  IF+SM++D+K+ P+  HY CMI+LLG  GL  EA  +I     +    +W +LL AC
Sbjct: 419 GRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKAC 478

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           +++GN+EL +  A+ L  +EPE  S+Y++L NIY S+G+ ++ A +   L  K ++ +P 
Sbjct: 479 KMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPG 538

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQR 630
           CS IEV      F+ GD+ H Q +EIY  ++ M + + + G+VP+   +L +++E+ ++ 
Sbjct: 539 CSSIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEG 598

Query: 631 VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFH 690
            L +HSEKLA+AFGLI+T   T L IV++ R+C +CH A KL++ +  REIV RD +RFH
Sbjct: 599 ALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFH 658

Query: 691 HFKDGMCSCGDYW 703
           HF+DG+CSC DYW
Sbjct: 659 HFRDGVCSCNDYW 671



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 207/447 (46%), Gaps = 70/447 (15%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A  +F+ + E N +  N +I G   S D + +  L++ +        S TF  ++++ A 
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC------------------------ 279
            +  + G+Q+H   LK+GF  +++V  +LI MY +                         
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 280 -------GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332
                  G I  AQ +FDE+  K  V WN +I+GYA  G  +EAL+L+ EM    V+ D 
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
            T+  ++  C    S+E  +Q H+ +  HGF  ++   +AL+D YSK G +E A  +F  
Sbjct: 197 STYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQG 256

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           +  K+VISWN LI GY +    +EA+ LF++ML +G  PN VT L+VL AC+  G  + G
Sbjct: 257 LSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIG 316

Query: 453 WEIFQSMSR---------------------------DHKIKPRAMH-----YACMIELLG 480
             I   + +                            H++    +H     +  MI    
Sbjct: 317 RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFA 376

Query: 481 REGLLDEAFAL---IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL---YGMEPEK 534
             G  D +F L   +R    +     +  LL+AC  +G L+LG+     +   Y M P K
Sbjct: 377 MHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTP-K 435

Query: 535 LSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           L +Y  ++++   SG  KEA E+I T+
Sbjct: 436 LEHYGCMIDLLGHSGLFKEAEEMINTM 462



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 171/365 (46%), Gaps = 49/365 (13%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           Y+EALELFE +  +       STY  ++SAC    SI   ++V S++   GF+ +L + N
Sbjct: 177 YKEALELFEEM-MKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVN 235

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ ++ +CG +  A  LF  +  ++++S N +I G      Y EA LLF ++       
Sbjct: 236 ALIDLYSKCGEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETP 295

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALK--MGFGDNVFVSCALIDMYSKCGSIEDAQG 287
              T  +++ A A L  I +G+ +H    K   G  +   +  +LIDMY+KCG IE A  
Sbjct: 296 NDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQ 355

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           VF+ M  K+   WN +I G+A+HG ++ + DL+  MR  G++ D  TF  ++  C+    
Sbjct: 356 VFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACS---- 411

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-----LCKNVISWN 402
                  H+G++  G                        RH+F  M     +   +  + 
Sbjct: 412 -------HSGMLDLG------------------------RHIFRSMTQDYKMTPKLEHYG 440

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
            +I   G+ G  +EA E+   M    M P+ V + ++L AC   G  E      Q++   
Sbjct: 441 CMIDLLGHSGLFKEAEEMINTM---EMEPDGVIWCSLLKACKMHGNVELAESFAQNLI-- 495

Query: 463 HKIKP 467
            KI+P
Sbjct: 496 -KIEP 499



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 153/343 (44%), Gaps = 78/343 (22%)

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A  VF+ + E   + WNT+I G+AL      +L LY  M   G+  + +TF  +++ C +
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK------------ 392
             +    +Q H  +++ GF LD+  +++L+  Y +  R+EDA  VFD+            
Sbjct: 77  SKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTAL 136

Query: 393 -------------------MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
                              +  K+V+SWNA+I+GY   G  +EA+ELFE+M+   +RP+ 
Sbjct: 137 ITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPDE 196

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
            T++ VLSAC+ SG  E G ++  S   DH           +I+L  + G ++ A  L +
Sbjct: 197 STYVTVLSACAHSGSIELGRQV-HSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQ 255

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
           G  +K              ++ N  +G +    LY                       KE
Sbjct: 256 GLSYKDV------------ISWNTLIGGYTHMNLY-----------------------KE 280

Query: 554 AAEVIRTLRRKG--------LRMLPACSW---IEVKKQPHVFL 585
           A  + + + R G        L +LPAC+    I++ +  HV++
Sbjct: 281 ALLLFQEMLRSGETPNDVTMLSVLPACAHLGAIDIGRWIHVYI 323


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/610 (36%), Positives = 354/610 (58%), Gaps = 15/610 (2%)

Query: 97  ICSQIEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSY 155
           +C+Q      + R +EAL LF E+L+   G    S ++ A I+AC          R    
Sbjct: 109 VCAQ------HGRSQEALALFYEMLK--QGIQPHSVSFTAAINACSAGPEFLPAGRALHA 160

Query: 156 MLST-GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLE 214
           +L   GF+  +     ++ M+ +CG + ++ + F+ M E N VS N +IA   +    LE
Sbjct: 161 LLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLE 220

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
           A      ++ E     S T+ T++ A      +   + +H C L+ GF  +V     +++
Sbjct: 221 ALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQDVV--NVILN 278

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MY KCG ++DA+ +F  MS+   + WNT+IA Y+ HG++ EAL  Y  M++ GV  D +T
Sbjct: 279 MYGKCGCLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYT 338

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           +  +I  C  L  +E  KQ H  L    F +  +ANS LV+ Y K G ++ AR +FDK  
Sbjct: 339 YVSVIDACATLGDMEVGKQVHRRLGDRAFQVTELANS-LVNMYGKCGILDVARSIFDKT- 396

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
            K  ++WNA+I  Y  H   ++A ELF  M L+G  P+++TF++VLSAC+ +GL E    
Sbjct: 397 AKGSVTWNAMIGAYAQHSHEQQAFELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAHS 456

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
            F  M +DH ++P   HY CM+E LG+ G L +A ALI+G PF+     W + L  CR +
Sbjct: 457 YFVCMQQDHGVRPGGGHYGCMVESLGKAGRLSDAEALIQGMPFEPDVLTWTSFLANCRSH 516

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
           G+++ GKFAA+    ++PE  + YV L  I+  +G  +EA+ + + +  +G+R     S 
Sbjct: 517 GDMKRGKFAAKGAIRIDPEASTGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSI 576

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLS 633
           I++    + F +GDQS+ ++KEI+ ++ R+  E+ + GY P+   +  DV+  Q++ +L 
Sbjct: 577 IKLGTSVYEFTAGDQSNPRSKEIFDELKRLDKEMKRAGYDPDMTHVAHDVEAGQKEPLLF 636

Query: 634 YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
            HSE+LA+AFG+I+TS  TPL+I+++ R+C DCH   KL + +T REI+VRD++RFHHFK
Sbjct: 637 AHSERLAIAFGIISTSQGTPLRIMKNLRVCGDCHAMTKLTSKITRREIIVRDSNRFHHFK 696

Query: 694 DGMCSCGDYW 703
           +G CSC D+W
Sbjct: 697 NGSCSCKDFW 706



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 125/427 (29%), Positives = 225/427 (52%), Gaps = 20/427 (4%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           +I +C  L ++ E +R+   +   G   D+Y+ N +++M+ +CG + +AR +F+  P +N
Sbjct: 40  VIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA-SAGLELISVGKQLH 254
           + S  ++I      G   EA  LF ++ ++     S +F   I A SAG E +  G+ LH
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALH 159

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           +   + GF D V  + +L+ MYSKCGS+E++   F+ M+E   V WN +IA +A H    
Sbjct: 160 ALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGL 219

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EAL    +M   G++    T+  ++    + + L+ A+  H  ++R GF  D+V  + ++
Sbjct: 220 EALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQDVV--NVIL 277

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           + Y K G ++DA  +F  M   +VI+WN +IA Y  HG   EA+  +E M   G+ P+  
Sbjct: 278 NMYGKCGCLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDY 337

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMS-RDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
           T+++V+ AC+  G  E G ++ + +  R  ++   A     ++ + G+ G+LD A ++  
Sbjct: 338 TYVSVIDACATLGDMEVGKQVHRRLGDRAFQVTELA---NSLVNMYGKCGILDVARSIFD 394

Query: 494 GAPFKTTKN--MWAALLTACRVNGN----LELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
               KT K    W A++ A   + +     EL  F   +L G EP  ++ ++ +L+   +
Sbjct: 395 ----KTAKGSVTWNAMIGAYAQHSHEQQAFEL--FLLMRLDGEEPSYIT-FMSVLSACAN 447

Query: 548 SGKLKEA 554
           +G  +EA
Sbjct: 448 AGLPEEA 454



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 182/377 (48%), Gaps = 46/377 (12%)

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
           +D  ++  D   +    +I++ A L  ++ G+++H    ++G G +V+VS  L+ MY KC
Sbjct: 23  IDALQKRKDADLKECVRVIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKC 82

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           GS+E+A+ VF+    K    W  +I   A HG S+EAL L+YEM   G++    +F+  I
Sbjct: 83  GSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAI 142

Query: 340 RICTRLASLEHAKQA-HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
             C+       A +A HA L R+GF   +VA ++LV  YSK G +E++   F+ M   N 
Sbjct: 143 NACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNA 202

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA---------------C 443
           +SWNA+IA +  H RG EA+   ++M L G+R   VT++ ++SA               C
Sbjct: 203 VSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDC 262

Query: 444 ------------------SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
                              + G  +    +F+SMS     +P  + +  MI    + G  
Sbjct: 263 ILRTGFDQDVVNVILNMYGKCGCLQDAEAMFKSMS-----QPDVIAWNTMIAAYSQHGHT 317

Query: 486 DEA---FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL--YGMEPEKLSNYVV 540
            EA   + L++          + +++ AC   G++E+GK    +L     +  +L+N   
Sbjct: 318 SEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGKQVHRRLGDRAFQVTELAN--S 375

Query: 541 LLNIYNSSGKLKEAAEV 557
           L+N+Y   G L  A  +
Sbjct: 376 LVNMYGKCGILDVARSI 392



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/320 (26%), Positives = 138/320 (43%), Gaps = 47/320 (14%)

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           +I+ C RL +L   ++ H  + R G G D+  ++ LV  Y K G +E+AR VF+    KN
Sbjct: 40  VIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           V SW  LI     HGR +EA+ LF +ML  G++P+ V+F A ++ACS             
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALH 159

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM-------WAALLTA 510
           ++ R +  +   +    ++ +  + G L+E+         KT ++M       W A++ A
Sbjct: 160 ALLRRYGFQDAVVATTSLVSMYSKCGSLEES--------VKTFESMTELNAVSWNAMIAA 211

Query: 511 CRVNGNLELGKFAAEKLYGMEPEKLS----NYVVLLNIYNSSGKLKEAAEVIRTLRRKG- 565
                    G  A   L  M  E +      Y+ L++ Y+   +LK A  +   + R G 
Sbjct: 212 F---AEHRRGLEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGF 268

Query: 566 --------LRMLPACSWIEVKK-------QPHVF-----LSGDQSHVQTKEIYRKVDRMM 605
                   L M   C  ++  +       QP V      ++    H  T E  R  + M 
Sbjct: 269 DQDVVNVILNMYGKCGCLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQ 328

Query: 606 LEISKHGYVPEEKTLLPDVD 625
            E    G VP++ T +  +D
Sbjct: 329 EE----GVVPDDYTYVSVID 344


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/600 (38%), Positives = 341/600 (56%), Gaps = 15/600 (2%)

Query: 112 EALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREV------KRVFSYMLSTGFEPD 164
           +AL LF E+L      DV S   D    AC  L+S   +      + + +Y +  G   D
Sbjct: 101 DALHLFVEML------DVASVCPDQHTVAC-ALKSCSRMCTLDVGRGIQAYAVKRGLMAD 153

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
            ++ + ++ M+  C  +  A+ LFD + E  +V  N II   + +G+++E   +F  + E
Sbjct: 154 RFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLE 213

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                   T  +++ A   +    +GK +     + G   N  +  ALIDMY+KCG +  
Sbjct: 214 VGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGK 273

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+ +FD M  +  V W+ +I+GY       EAL L+ EM+ + V+ +  T   ++  C  
Sbjct: 274 ARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSVLSACAV 333

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           L +LE  K  H+ + R    L I+  +ALVDFY+K G I+DA   F+ M  KN  +W AL
Sbjct: 334 LGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTAL 393

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I G   +GRG EA+ELF  M    + P  VTF+ VL ACS S L E G   F SM++D+ 
Sbjct: 394 IKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDYG 453

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           IKPRA HY C+++LLGR GL+DEA+  IR  P +    +W ALL++C V+ N+E+G+ A 
Sbjct: 454 IKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEAL 513

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
           +++  + P    +Y++L NIY S G+ K AA + + ++ +G+   P CS IE+      F
Sbjct: 514 KQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVEF 573

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAF 643
            + D  H Q KEIY+KV+ M+  I   GY+P    +  +VDE E+ V +S+HSEKLA+AF
Sbjct: 574 FAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIAF 633

Query: 644 GLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           GL+       +++ ++ R+C DCH+A KLI+ V  REIVVRD +RFHHFKDG CSC DYW
Sbjct: 634 GLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDYW 693


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/591 (37%), Positives = 334/591 (56%), Gaps = 67/591 (11%)

Query: 180 MMIDARRLFDEMPERNLVSCNMIIAGMIDSGD---------------------------- 211
           +M +AR+LFDEMP R+ +S   II G + + D                            
Sbjct: 207 LMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAH 266

Query: 212 ---YLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN--- 265
              YLEAF +F  +          TF ++I   A      +GK++H+  LK         
Sbjct: 267 RGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDV 326

Query: 266 -VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY----------------- 307
            + V+ ALI  Y KCG ++ AQ +F++M E+  V WN I++GY                 
Sbjct: 327 AMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMP 386

Query: 308 --------------ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
                         A  G++EEAL  +  M+  G +   + F+  I  C+ L SL+H +Q
Sbjct: 387 EKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQ 446

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            HA +VR+G+   + A +AL+  Y++ G ++ A  +F  M C + ISWNA+IA  G HG+
Sbjct: 447 LHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQ 506

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
           G +A+ELFE+ML  G+ P+ ++FL V+SACS +GL + G + F SM   + + P   HYA
Sbjct: 507 GTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYA 566

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533
            +I+LL R G   EA  ++   PF+    +W ALL  CR++GN++LG  AAE+L+ ++P+
Sbjct: 567 RIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQ 626

Query: 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQ 593
               YV+L N+Y  +G+  + A+V + +R +G++  P CSWIEV+ + H FL GD +H +
Sbjct: 627 HDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPE 686

Query: 594 TKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWT 652
            ++IY  +++++LE+ K GYVP+ K +L DV+   ++  LS HSEKLAVA+G +      
Sbjct: 687 VRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMKLPHGA 746

Query: 653 PLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            +++ ++ RIC DCHNA K ++ V GREIVVRD  RFHHF+DG CSCGDYW
Sbjct: 747 TVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 128/542 (23%), Positives = 232/542 (42%), Gaps = 120/542 (22%)

Query: 128 VGSSTYDALISACIGLRSIRE--VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
             ++ Y +L+  C     I     + V ++M+++GF+P  ++ NR++ ++ +   +  AR
Sbjct: 9   TAANRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYAR 68

Query: 186 RLFDEMPERNLVSCNMIIA--------------------GMIDS-------------GDY 212
            LFDE+P+ ++V+   +IA                    GM DS              D 
Sbjct: 69  YLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDG 128

Query: 213 LEAFLLFLDLWEEFSDCGSRTFATMIRASAGL-ELISVGKQLHSCALKMGFGDNVFVSCA 271
             A  LF D+  +     + TF +++ A A + E     +QLH   +K G G    V  A
Sbjct: 129 HAAIELFCDMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNA 188

Query: 272 LIDMYSKCGS---------IEDAQGVFDEM------------------------------ 292
           LI  Y KC +         + +A+ +FDEM                              
Sbjct: 189 LISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNG 248

Query: 293 -SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
            S+K  V WN +I+GYA  G   EA +++ +M  S +++D FTF+ +I +C         
Sbjct: 249 TSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLG 308

Query: 352 KQAHAGLVRH----GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           K+ HA  ++        + +  N+AL+ FY K G+++ A+ +F+KM  ++++SWN +++G
Sbjct: 309 KEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSG 368

Query: 408 YGNH-------------------------------GRGEEAVELFEQMLLNGMRPNHVTF 436
           Y N                                G  EEA++ F +M L G  P    F
Sbjct: 369 YVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAF 428

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
              + +CS  G  + G ++   + R +  +        +I +  R G++D A  L    P
Sbjct: 429 AGAIISCSVLGSLKHGRQLHAQVVR-YGYESSLSAGNALITMYARCGVVDAAHCLFINMP 487

Query: 497 FKTTKNMWAALLTACRVNGN----LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
                + W A++ A   +G     +EL  F      G+ P+++S ++ +++  + +G +K
Sbjct: 488 CVDAIS-WNAMIAALGQHGQGTQAIEL--FEEMLKEGILPDRIS-FLTVISACSHAGLVK 543

Query: 553 EA 554
           E 
Sbjct: 544 EG 545



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 169/381 (44%), Gaps = 64/381 (16%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST--GFEPDLYM 167
           Y EA E+F  +       +   T+ ++IS C      R  K + +Y L T     PD+ M
Sbjct: 270 YLEAFEMFRKM-IMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAM 328

Query: 168 --RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
              N ++  + +CG +  A+ +F++MPER+LVS N+I++G ++     EA   F ++ E+
Sbjct: 329 PVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEK 388

Query: 226 --------------------------------FSDCGSRTFATMIRASAGLELISVGKQL 253
                                           F  C    FA  I + + L  +  G+QL
Sbjct: 389 NILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPC-DYAFAGAIISCSVLGSLKHGRQL 447

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           H+  ++ G+  ++    ALI MY++CG ++ A  +F  M     + WN +IA    HG  
Sbjct: 448 HAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQG 507

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG----------F 363
            +A++L+ EM   G+  D  +F  +I  C+           HAGLV+ G          +
Sbjct: 508 TQAIELFEEMLKEGILPDRISFLTVISACS-----------HAGLVKEGRKYFDSMHNVY 556

Query: 364 GL--DIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVEL 420
           G+  D    + ++D   + G+  +A+ V + M        W AL+AG   HG  +  +E 
Sbjct: 557 GVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEA 616

Query: 421 FEQMLLNGMRPNHVTFLAVLS 441
            E++    ++P H     +LS
Sbjct: 617 AERLF--ELKPQHDGTYVLLS 635


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/598 (35%), Positives = 353/598 (59%), Gaps = 7/598 (1%)

Query: 110 YREALELFEILE-FEGGFDVGSSTYDALISACIGLRSIREVKR-VFSYMLSTGFEPDLYM 167
           + E++++F  LE   GG      T   L+ AC G   +++V     SY+L+ G   D+++
Sbjct: 227 FWESIQMF--LEMIGGGLRPSPVTMANLLKAC-GQSGLKKVGMCAHSYVLALGMGNDVFV 283

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
              ++ M+   G    A  +FD M  R+L+S N +I+G + +G   E++ LF  L +  S
Sbjct: 284 LTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGS 343

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
              S T  ++IR  +    +  G+ LHSC ++     ++ +S A++DMYSKCG+I+ A  
Sbjct: 344 GFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATI 403

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           VF  M +K  + W  ++ G + +GY+E+AL L+ +M++  V  +  T   ++  C  L S
Sbjct: 404 VFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGS 463

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-CKNVISWNALIA 406
           L   +  HA  +RHG+  D V  SAL+D Y+K G+I  A  +F+     K+VI  N++I 
Sbjct: 464 LTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIM 523

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GYG HG G  A+ ++ +M+   ++PN  TF+++L+ACS SGL E G  +F SM RDH ++
Sbjct: 524 GYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVR 583

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P+  HYAC+++L  R G L+EA  L++  PF+ + ++  ALL+ CR + N  +G   A++
Sbjct: 584 PQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADR 643

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           L  ++      YV+L NIY  + K +    +   +R +G++ +P  S IEV  + + F +
Sbjct: 644 LISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVYTFFA 703

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGL 645
            D SH    +IY+ ++ + LE+   GY+P+   +L DV+E  + ++L  HSE+LA+AFGL
Sbjct: 704 SDDSHPSWADIYQLLENLRLEVEAEGYIPDTSCVLRDVNEPMKVKLLWGHSERLAIAFGL 763

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++T   + ++I ++ R+C DCHN  K I+ +  REI+VRDA+RFHHF +G CSC D+W
Sbjct: 764 LSTPCGSLIKITKNLRVCVDCHNVTKYISKIVQREIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  205 bits (522), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 150/558 (26%), Positives = 270/558 (48%), Gaps = 57/558 (10%)

Query: 89  QMKKPSAGIC-SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDAL--ISACIGLRS 145
           Q   P   +C + I   + N+++ E   LF ++   G  D+  ++Y  +  + AC  L  
Sbjct: 104 QCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMM---GSCDIEINSYTCMFALKACTDLLD 160

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
                 +    +  GF   LY+ + ++   V+ G + DA+++FD MPE+++V  N II G
Sbjct: 161 DEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGG 220

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
            +  G + E+  +FL++          T A +++A     L  VG   HS  L +G G++
Sbjct: 221 YVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGND 280

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
           VFV  +L+DMYS  G    A  VFD M  ++ + WN +I+GY  +G   E+  L+  +  
Sbjct: 281 VFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQ 340

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
           SG   D  T   +IR C++ + LE+ +  H+ ++R      +V ++A+VD YSK G I+ 
Sbjct: 341 SGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQ 400

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           A  VF +M  KNVI+W A++ G   +G  E+A++LF QM    +  N VT ++++  C+ 
Sbjct: 401 ATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAH 460

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR-------EGLLDEAF--------- 489
            G   +G  +     R H     A+  + +I++  +       E L +  F         
Sbjct: 461 LGSLTKGRTVHAHFIR-HGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCN 519

Query: 490 ALIRG-------------------APFKTTKNMWAALLTACRVNGNLELGK---FAAEKL 527
           ++I G                      K  +  + +LLTAC  +G +E GK    + E+ 
Sbjct: 520 SMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERD 579

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
           + + P+   +Y  L+++++ +G+L+EA E+++ +  +     P+   +E        LSG
Sbjct: 580 HDVRPQH-KHYACLVDLHSRAGRLEEADELVKQMPFQ-----PSTDVLE------ALLSG 627

Query: 588 DQSHVQTKEIYRKVDRMM 605
            ++H  T    +  DR++
Sbjct: 628 CRTHKNTNMGIQIADRLI 645



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 203/409 (49%), Gaps = 8/409 (1%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           ++  VK + + ++      + ++  +++ ++   G +  AR +FD+        CN +IA
Sbjct: 59  TLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCNAMIA 118

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
           G + +  ++E   LF  +     +  S T    ++A   L    VG ++   A++ GF  
Sbjct: 119 GFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHL 178

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           +++V  ++++   K G + DAQ VFD M EK  V WN+II GY   G   E++ ++ EM 
Sbjct: 179 HLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMI 238

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
             G++    T + +++ C +    +    AH+ ++  G G D+   ++LVD YS  G   
Sbjct: 239 GGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTG 298

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            A  VFD M  +++ISWNA+I+GY  +G   E+  LF +++ +G   +  T ++++  CS
Sbjct: 299 SAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCS 358

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
           ++   E G  I  S     +++   +    ++++  + G + +A  ++ G   K     W
Sbjct: 359 QTSDLENG-RILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQA-TIVFGRMGKKNVITW 416

Query: 505 AALLTACRVNGNLELGKFAAEKLY-GMEPEKL-SNYVVLLNIYNSSGKL 551
            A+L     NG  E     A KL+  M+ EK+ +N V L+++ +    L
Sbjct: 417 TAMLVGLSQNGYAE----DALKLFCQMQEEKVAANSVTLVSLVHCCAHL 461


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/610 (37%), Positives = 365/610 (59%), Gaps = 26/610 (4%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +E+L LF  +  EG    G  T  ++++AC    S+ +V    +++L    E     R+ 
Sbjct: 335 QESLRLFFAMNLEGTKPSGV-TLVSVLNAC----SMLQVGSATAFVLEQAMEVVSATRDN 389

Query: 171 VL-----LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
           VL       + R   +  AR  FD +   ++VS N + A  +      EA +LF  +  E
Sbjct: 390 VLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLE 449

Query: 226 FSDCGSRTFATMIRASAGLE---LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
                  TF T + A A        ++GK++ S   + G   +  V+ A ++MY+KCGS+
Sbjct: 450 GVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSL 509

Query: 283 EDAQGVFDEMS--EKTTVGWNTIIAGYALHGYSEEALDLYYEMR-DSGVKMDHFTFSMII 339
            DA+ VF+ +S   +  + WN+++A Y  HG  +EA +L+  M  +  VK +  TF  ++
Sbjct: 510 ADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVL 569

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KN 397
              T   S+   ++ HA +V +GF  D V  +AL++ Y+K G ++DA+ +FDK     ++
Sbjct: 570 DASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQED 629

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           VI+W +LIAGY  +G+ E A++LF  M   G+RPNHVTF++ L+AC+  G  E+G E+  
Sbjct: 630 VIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQGCELLS 689

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN---MWAALLTACRVN 514
            M+ DH I P + H++C+++LLGR G LDEA  L+     +T++     W ALL AC+ +
Sbjct: 690 GMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLE----RTSQADVITWMALLDACKNS 745

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
             LE G+  AE++  ++PE  S+Y+VL ++Y ++G+  EAA + +T+  KG+R  P CS 
Sbjct: 746 KELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSA 805

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLS 633
           +EV ++ H F +GD+SH +++EIY +++R+   I   GYV +   +L DV  E ++R+L 
Sbjct: 806 VEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLM 865

Query: 634 YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
            HSEKLA+AFGL++T   +PL+++++ R+C DCH A KLI+ VTGR+I++RD+SR+HHF 
Sbjct: 866 RHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFT 925

Query: 694 DGMCSCGDYW 703
            G CSCGDYW
Sbjct: 926 SGTCSCGDYW 935



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 133/476 (27%), Positives = 230/476 (48%), Gaps = 42/476 (8%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R  +A+ELF+ +E             AL++AC  L ++   +R+ S +    FE +  + 
Sbjct: 124 RPDKAMELFDRMEVRPN----CHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLG 179

Query: 169 NRVLLMHVRCGMMIDARRLFDEMP---ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
           N ++ M+ +CG +IDA++ FD +P   +R++V+ N +I+  + +G   EA  LF D+  +
Sbjct: 180 NALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRD 239

Query: 226 FS-DCGSRTFATMIRA--SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
            +    S TF +++ +   AGL  +   + +H   +  G     FV  AL+D Y K GS+
Sbjct: 240 GAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSL 299

Query: 283 EDAQGVF----DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           +DA  VF    DE    + V  + +I+    +G+ +E+L L++ M   G K    T   +
Sbjct: 300 DDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSV 359

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGL-----DIVANSALVDFYSKWGRIEDARHVFDKM 393
           +  C+ L        A A ++     +     D V  + L+  Y++   +  AR  FD +
Sbjct: 360 LNACSML----QVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLPRARATFDAI 415

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC------SRSG 447
              +V+SWNA+ A Y  H R  EA+ LFE+MLL G+RP+  TF+  L+AC      + S 
Sbjct: 416 QSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASA 475

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI-RGAPFKTTKNMWAA 506
           + +R     QS+  +  ++         + +  + G L +A A+  R +P +     W +
Sbjct: 476 IGKR----IQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPARRDCITWNS 531

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKL-----SNYVVLLNIYNSSGKLKEAAEV 557
           +L A    G+  LGK A E    ME EKL       +V +L+   S   + +  E+
Sbjct: 532 MLAA---YGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREI 584



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 127/481 (26%), Positives = 231/481 (48%), Gaps = 28/481 (5%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACI--GLRSIREVKRVFSYM 156
           + I   + N   REAL+LF  ++ +G     S T+ +++ +C+  GL S+ +V+ +   +
Sbjct: 215 AMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRI 274

Query: 157 LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLF----DEMPERNLVSCNMIIAGMIDSGDY 212
           +  G E + ++R  ++  + + G + DA  +F    DE P  +LV+C+ +I+    +G  
Sbjct: 275 VGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWP 334

Query: 213 LEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM--GFGDNVFVSC 270
            E+  LF  +  E +     T  +++ A + L++ S    +   A+++     DNV    
Sbjct: 335 QESLRLFFAMNLEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQAMEVVSATRDNVL-GT 393

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
            L+  Y++   +  A+  FD +     V WN + A Y  H  S EAL L+  M   GV+ 
Sbjct: 394 TLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRP 453

Query: 331 DHFTFSMIIRICTRLASLEHA---KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
              TF   +  C        +   K+  + L   G   D    +A ++ Y+K G + DAR
Sbjct: 454 SVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADAR 513

Query: 388 HVFDKMLC--KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM-RPNHVTFLAVLSACS 444
            VF+++    ++ I+WN+++A YG+HG G+EA ELF+ M    + +PN VTF+AVL A +
Sbjct: 514 AVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDAST 573

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM- 503
                 +G EI   +  +       +  A ++ +  + G LD+A A+      K++ N  
Sbjct: 574 SRTSIAQGREIHARVVSNGFESDTVIQNA-LLNMYAKCGSLDDAQAIFD----KSSSNQE 628

Query: 504 ----WAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
               W +L+      G  E  L  F   +  G+ P  ++ ++  L   N  GKL++  E+
Sbjct: 629 DVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVT-FISALTACNHGGKLEQGCEL 687

Query: 558 I 558
           +
Sbjct: 688 L 688



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/326 (30%), Positives = 175/326 (53%), Gaps = 17/326 (5%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLS--TGFEPDLYMRNRVLLMHVRCGMMIDARRLF 188
           STY  L+ AC  LR++++ +R+ +++LS         ++ + +++MH +CG + +A  L 
Sbjct: 44  STYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALA 103

Query: 189 DEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS 248
           D     ++ SC  +I   ++ G   +A  LF D  E   +C       ++ A + L  ++
Sbjct: 104 DRFA--SVYSCTAMIRAWMEHGRPDKAMELF-DRMEVRPNC--HALIALVNACSCLGNLA 158

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM---SEKTTVGWNTIIA 305
            G+++HS      F +N  +  ALI MYSKCGS+ DA+  FD +   S++  V WN +I+
Sbjct: 159 AGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMIS 218

Query: 306 GYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTR--LASLEHAKQAHAGLVRHG 362
            +  +G + EAL L+ +M RD     +  TF  ++  C    L SLE  +  H  +V  G
Sbjct: 219 AFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAG 278

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVF----DKMLCKNVISWNALIAGYGNHGRGEEAV 418
              +    +ALVD Y K G ++DA  VF    D+    ++++ +A+I+    +G  +E++
Sbjct: 279 IEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESL 338

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACS 444
            LF  M L G +P+ VT ++VL+ACS
Sbjct: 339 RLFFAMNLEGTKPSGVTLVSVLNACS 364



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 107/224 (47%), Gaps = 12/224 (5%)

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA--NSALVDFYSKWGRIEDARHVFD 391
           T+  +++ C RL +L+  ++ HA ++     L   +   S L+  ++K G + +A  + D
Sbjct: 45  TYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALAD 104

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
           +    +V S  A+I  +  HGR ++A+ELF++M    +RPN    +A+++ACS  G    
Sbjct: 105 RF--ASVYSCTAMIRAWMEHGRPDKAMELFDRM---EVRPNCHALIALVNACSCLGNLAA 159

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM--WAALLT 509
           G  I   +S D   +  ++    +I +  + G L +A       P  + +++  W A+++
Sbjct: 160 GRRIHSQIS-DRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMIS 218

Query: 510 ACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           A   NG+    L  F      G  P     +V +L+    +G L
Sbjct: 219 AFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLL 262


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/550 (38%), Positives = 328/550 (59%), Gaps = 8/550 (1%)

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F  D +  + +L M+  C   IDAR+ FDE+P  N V    + +G + +     +  LF 
Sbjct: 121 FPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYVRNNLVYPSLALFR 180

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVG--KQLHSCALKMGFGDNVFVSCALIDMYSK 278
            L    S       A ++  SA   +   G    LH+  +K G   +  V   ++D Y+K
Sbjct: 181 KLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGDAGVVNTMLDAYAK 240

Query: 279 CG--SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD--SGVKMDHFT 334
            G   +  A+ VFD M EK  V WN++IA YA +G S +AL LY +M +    +K +  T
Sbjct: 241 GGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVT 299

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
            S I+  C    +++  K  H  +VR G   ++   +++VD YSK GR+E AR  F K+ 
Sbjct: 300 LSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIK 359

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
            KN++SW+A+I GYG HG G+EA+++F +M  +G  PN++TF++VL+ACS +GL ++G  
Sbjct: 360 EKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRY 419

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
            + +M +   I+P   HY CM++LLGR G LDEA+ LI+    K    +W ALL+ACR++
Sbjct: 420 WYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIH 479

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
            N+EL + +A++L+ ++      YV+L NIY  +G  K+   +   ++ +G+   P  S 
Sbjct: 480 KNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSS 539

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLS 633
           +E+K + H+F  GD+SH Q KEIY  + +++ ++ + GYVP   ++L D+DE+E+   L 
Sbjct: 540 VELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLDEEEKASALH 599

Query: 634 YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
            HSEKLA+AF L+N+   + + ++++ R+C DCH AIKLI  +  REI+VRD  RFHHFK
Sbjct: 600 IHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHFK 659

Query: 694 DGMCSCGDYW 703
           DG CSCGDYW
Sbjct: 660 DGSCSCGDYW 669



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 110/231 (47%), Gaps = 5/231 (2%)

Query: 90  MKKPSAGICSQIEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIRE 148
           M+K      S I     N    +AL L+ ++L   G     + T  A++ AC    +I+ 
Sbjct: 256 MEKDVVSWNSMIALYAQNGMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQT 315

Query: 149 VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
            K + + ++  G E ++Y+   V+ M+ +CG +  AR+ F ++ E+N++S + +I G   
Sbjct: 316 GKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGM 375

Query: 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
            G   EA  +F ++     +    TF +++ A +   L+  G+  ++ A+K  FG    V
Sbjct: 376 HGHGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYN-AMKKRFGIEPGV 434

Query: 269 S--CALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYSEEA 316
                ++D+  + G +++A G+  EM  K     W  +++   +H   E A
Sbjct: 435 EHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELA 485


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/571 (38%), Positives = 344/571 (60%), Gaps = 36/571 (6%)

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N ++  H++ G++  A+  F++M ER++VS N +I+G    G   EA  +F  +  + S 
Sbjct: 215 NTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSS 274

Query: 229 CGSR-TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
              + T A+ + A A LE + +GKQ+H+  ++  F     V  ALI MYSK G +E AQ 
Sbjct: 275 KPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQK 334

Query: 288 V---------------------------------FDEMSEKTTVGWNTIIAGYALHGYSE 314
           +                                 FD +  +  V W  +I GY  +G+++
Sbjct: 335 IIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQ 394

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           +A++L+  M   G K +++T + ++ + + LASL+H +Q HA   R G    +  ++AL+
Sbjct: 395 DAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALI 454

Query: 375 DFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
             Y+K G I DAR VF+ +  K + I+W ++I     HG GEEA+ LFE+ML NG++P+H
Sbjct: 455 TMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDH 514

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
           +T++ VLSAC+  GL E+G   +  M   HKI P   HYACMI+L GR GLL EA A I 
Sbjct: 515 ITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIE 574

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
             P +     W +LL +C+V+ N+EL + AAE+L  +EPE    Y  L N+Y++ G+ + 
Sbjct: 575 NMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWEN 634

Query: 554 AAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGY 613
           AA + ++++ KG++     SW+++K + H+F   D  H Q   IY  + ++  EI K G+
Sbjct: 635 AANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGF 694

Query: 614 VPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKL 672
           VP+ +++L D++E+ ++++LS+HSEKLA+AFGLI T + T L+I+++ R+C DCH+AIK 
Sbjct: 695 VPDTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAIKF 754

Query: 673 IAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I+ + GREI+VRDA+RFHHFK+G+CSC DYW
Sbjct: 755 ISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 131/542 (24%), Positives = 238/542 (43%), Gaps = 101/542 (18%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S  Y + +   +  +     K + + ++  G    +++ N ++  + + G + DA R+FD
Sbjct: 13  SDPYTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFD 72

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE-----------------EFSDC--- 229
           EMP +++ S N+I++G    G   EA  +F ++ E                 +F +    
Sbjct: 73  EMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGM 132

Query: 230 -----------GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
                         T   ++ + A +E + +G+++HS  +K G    + V+ +L++MY+K
Sbjct: 133 FREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAK 192

Query: 279 CGSIEDAQGVFDEMSEKTT-------------------------------VGWNTIIAGY 307
            G    A+ VFD M  K+T                               V WN +I+GY
Sbjct: 193 SGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGY 252

Query: 308 ALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF--- 363
             HG+  EALD++ +M  DS  K D FT +  +  C  L +L+  KQ HA ++R  F   
Sbjct: 253 NQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTF 312

Query: 364 ------------------------------GLDIVANSALVDFYSKWGRIEDARHVFDKM 393
                                          LD++A +AL+D Y K G I  AR +FD +
Sbjct: 313 GAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSL 372

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             ++V++W A+I GY  +G  ++A+ELF  M+  G +PN+ T   +LS  S     + G 
Sbjct: 373 RVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGR 432

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           +I  S +R       ++  A +I +  + G +++A  +     +K     W +++ A   
Sbjct: 433 QIHASATRSGNASSVSVSNA-LITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQ 491

Query: 514 NGNLELGKFAAEKLY--GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           +G  E      E++   G++P+ ++ YV +L+     G L E       L +   +++P 
Sbjct: 492 HGLGEEALTLFERMLENGIKPDHIT-YVGVLSACTHVG-LVEQGRSYYNLMQNAHKIIPT 549

Query: 572 CS 573
            S
Sbjct: 550 PS 551



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 197/392 (50%), Gaps = 18/392 (4%)

Query: 80  LKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISA 139
           +  SS PD      +   C+ +E L L K+         I+  E  FD   +  +ALIS 
Sbjct: 270 MDSSSKPDKFTLASALSACANLENLKLGKQIHA-----HIIRTE--FDTFGAVGNALISM 322

Query: 140 CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSC 199
                 +   +++    + +    D+     +L  +V+ G +  ARR+FD +  R++V+ 
Sbjct: 323 YSKSGGVEIAQKIIEQSMISNL--DVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAW 380

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK 259
             +I G + +G   +A  LF  + +E     + T ATM+  S+ L  +  G+Q+H+ A +
Sbjct: 381 TAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATR 440

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALD 318
            G   +V VS ALI MY+K GSI DA+ VF+ +  ++ T+ W ++I   A HG  EEAL 
Sbjct: 441 SGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALT 500

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN--SALVDF 376
           L+  M ++G+K DH T+  ++  CT +  +E  + ++  L+++   +    +  + ++D 
Sbjct: 501 LFERMLENGIKPDHITYVGVLSACTHVGLVEQGR-SYYNLMQNAHKIIPTPSHYACMIDL 559

Query: 377 YSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHV 434
           + + G +++A    + M +  +VI+W +L+A    H   E A    E++LL  + P N  
Sbjct: 560 FGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLL--IEPENSG 617

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
            + A+ +  S  G  E    I +SM +D  +K
Sbjct: 618 AYSALANVYSACGQWENAANIRKSM-KDKGVK 648


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/636 (35%), Positives = 356/636 (55%), Gaps = 45/636 (7%)

Query: 101 IEKLVLNKRYREALELFEILEFE-GGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           I  L  + R REAL L  ++E    G  + S+TY + ++AC  L S+   K++ + ++ +
Sbjct: 232 IAALSQSGRVREALGL--VVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRS 289

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
             + D Y+ + ++ ++ +CG   +A+R+F+ + +RN VS  ++I G +    + ++  LF
Sbjct: 290 LPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELF 349

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
             +  E         AT+I        + +G+QLHS  LK G    + VS +LI +Y+KC
Sbjct: 350 NQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKC 409

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYAL------------------------------ 309
           G +++A+ VF  MSE+  V W ++I  Y+                               
Sbjct: 410 GDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYI 469

Query: 310 -HGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
            HG  E+ L +Y  M     V  D  T+  + R C  + + +   Q     V+ G  L++
Sbjct: 470 QHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNV 529

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              +A +  YSK GRI +A+ +FD +  K+V+SWNA+I GY  HG G++A + F+ ML  
Sbjct: 530 SVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSK 589

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G +P++++++AVLS CS SGL + G   F  M+R H I P   H++CM++LLGR G L E
Sbjct: 590 GAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTE 649

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A  LI   P K T  +W ALL+AC+++GN EL + AA+ ++ ++     +Y++L  IY+ 
Sbjct: 650 AKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSD 709

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
           +GK  ++A+V + +R KG++  P  SW+EV+ + HVF + D SH Q   I  K+D +M +
Sbjct: 710 AGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEK 769

Query: 608 ISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
           I+  GYV  E            R   +HSEKLAVAFG+++   W P+ I+++ RIC DCH
Sbjct: 770 IAHLGYVRTE----------SPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCH 819

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             IKLI+ VT RE V+RD  RFHHFK G CSCGDYW
Sbjct: 820 TVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 855



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 224/460 (48%), Gaps = 20/460 (4%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           + L LF   +F G  DV +    AL+   +    +    R+FS +      P ++ RN +
Sbjct: 149 QLLGLFWKFDFWGDPDVET----ALVDMFVRCGYVDFASRLFSQIE----RPTIFCRNSM 200

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L  + +   +  A   F++M ER++VS NM+IA +  SG   EA  L +++  +     S
Sbjct: 201 LAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDS 260

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T+ + + A A L  +  GKQLH+  ++     + +V+ ALI++Y+KCGS ++A+ VF+ 
Sbjct: 261 TTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNS 320

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           + ++ +V W  +I G   +    ++++L+ +MR   + +D F  + +I  C     L   
Sbjct: 321 LQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLG 380

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           +Q H+  ++ G    IV +++L+  Y+K G +++A  VF  M  ++++SW ++I  Y   
Sbjct: 381 RQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQI 440

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G   +A E F+ M       N +T+ A+L A  + G  E G +++ +M     + P  + 
Sbjct: 441 GNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVT 496

Query: 472 YACMIEL---LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
           Y  +      +G   L D+       A      ++  A +T     G +      A+KL+
Sbjct: 497 YVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRIS----EAQKLF 552

Query: 529 G-MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
             +  + + ++  ++  Y+  G  K+AA+    +  KG +
Sbjct: 553 DLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAK 592



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 160/355 (45%), Gaps = 41/355 (11%)

Query: 128 VGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL 187
           V  +  DAL S C    ++   + +   +++ G    ++++N +L  ++ CG + DARRL
Sbjct: 19  VTQALADALRS-CGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRL 77

Query: 188 F-DEMPERNLVSCNMIIAGMIDSGDYLEAFLLF-------LDLWEEFSDCGSRTFATMIR 239
              ++ E N+++ N+++ G    G   +A  LF       +  W       SR   + + 
Sbjct: 78  LRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMS 137

Query: 240 ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG------------------- 280
             A L    +  QL     K  F  +  V  AL+DM+ +CG                   
Sbjct: 138 CGA-LGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFC 196

Query: 281 ------------SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
                        I+ A   F++M+E+  V WN +IA  +  G   EAL L  EM   GV
Sbjct: 197 RNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGV 256

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
           ++D  T++  +  C RL SL   KQ HA ++R    +D    SAL++ Y+K G  ++A+ 
Sbjct: 257 RLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKR 316

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           VF+ +  +N +SW  LI G   +    ++VELF QM    M  +      ++S C
Sbjct: 317 VFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGC 371



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 124/302 (41%), Gaps = 51/302 (16%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF- 289
           ++  A  +R+      ++  + LH   + +G    VF+   L+  Y  CG++ DA+ +  
Sbjct: 20  TQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLR 79

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI------CT 343
            ++ E   +  N ++ GYA  G   +A +L+  M    V   +   S   R       C 
Sbjct: 80  ADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCG 139

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK-----MLCKN- 397
            L   E A Q      +  F  D    +ALVD + + G ++ A  +F +     + C+N 
Sbjct: 140 ALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNS 199

Query: 398 -------------------------VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
                                    V+SWN +IA     GR  EA+ L  +M   G+R +
Sbjct: 200 MLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLD 259

Query: 433 HVTFLAVLSACSRSGLSERGW------EIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
             T+ + L+AC+R  L   GW      ++ +S+    +I P     + +IEL  + G   
Sbjct: 260 STTYTSSLTACAR--LFSLGWGKQLHAKVIRSLP---QIDPYVA--SALIELYAKCGSFK 312

Query: 487 EA 488
           EA
Sbjct: 313 EA 314


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/636 (35%), Positives = 356/636 (55%), Gaps = 45/636 (7%)

Query: 101 IEKLVLNKRYREALELFEILEFE-GGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           I  L  + R REAL L  ++E    G  + S+TY + ++AC  L S+   K++ + ++ +
Sbjct: 242 IAALSQSGRVREALGL--VVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRS 299

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
             + D Y+ + ++ ++ +CG   +A+R+F+ + +RN VS  ++I G +    + ++  LF
Sbjct: 300 LPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELF 359

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
             +  E         AT+I        + +G+QLHS  LK G    + VS +LI +Y+KC
Sbjct: 360 NQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKC 419

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYAL------------------------------ 309
           G +++A+ VF  MSE+  V W ++I  Y+                               
Sbjct: 420 GDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYI 479

Query: 310 -HGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
            HG  E+ L +Y  M     V  D  T+  + R C  + + +   Q     V+ G  L++
Sbjct: 480 QHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNV 539

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              +A +  YSK GRI +A+ +FD +  K+V+SWNA+I GY  HG G++A + F+ ML  
Sbjct: 540 SVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSK 599

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G +P++++++AVLS CS SGL + G   F  M+R H I P   H++CM++LLGR G L E
Sbjct: 600 GAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTE 659

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A  LI   P K T  +W ALL+AC+++GN EL + AA+ ++ ++     +Y++L  IY+ 
Sbjct: 660 AKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSD 719

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
           +GK  ++A+V + +R KG++  P  SW+EV+ + HVF + D SH Q   I  K+D +M +
Sbjct: 720 AGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLDELMEK 779

Query: 608 ISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
           I+  GYV  E            R   +HSEKLAVAFG+++   W P+ I+++ RIC DCH
Sbjct: 780 IAHLGYVRTE----------SPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCH 829

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             IKLI+ VT RE V+RD  RFHHFK G CSCGDYW
Sbjct: 830 TVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 224/460 (48%), Gaps = 20/460 (4%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           + L LF   +F G  DV +    AL+   +    +    R+FS +      P ++ RN +
Sbjct: 159 QLLGLFWKFDFWGDPDVET----ALVDMFVRCGYVDFASRLFSQIE----RPTIFCRNSM 210

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L  + +   +  A   F++M ER++VS NM+IA +  SG   EA  L +++  +     S
Sbjct: 211 LAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDS 270

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T+ + + A A L  +  GKQLH+  ++     + +V+ ALI++Y+KCGS ++A+ VF+ 
Sbjct: 271 TTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNS 330

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           + ++ +V W  +I G   +    ++++L+ +MR   + +D F  + +I  C     L   
Sbjct: 331 LQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLG 390

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           +Q H+  ++ G    IV +++L+  Y+K G +++A  VF  M  ++++SW ++I  Y   
Sbjct: 391 RQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQI 450

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G   +A E F+ M       N +T+ A+L A  + G  E G +++ +M     + P  + 
Sbjct: 451 GNIIKAREFFDGMDTR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVT 506

Query: 472 YACMIEL---LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
           Y  +      +G   L D+       A      ++  A +T     G +      A+KL+
Sbjct: 507 YVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRIS----EAQKLF 562

Query: 529 G-MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
             +  + + ++  ++  Y+  G  K+AA+    +  KG +
Sbjct: 563 DLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAK 602



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 145/314 (46%), Gaps = 32/314 (10%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           EP++   N ++  + + G + DA  LFD MP R++ S N +++G   +  +L+    F+ 
Sbjct: 68  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 222 LWEEFSDC-GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           +         + TF  ++++   L    +  QL     K  F  +  V  AL+DM+ +CG
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCG 187

Query: 281 -------------------------------SIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
                                           I+ A   F++M+E+  V WN +IA  + 
Sbjct: 188 YVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQ 247

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G   EAL L  EM   GV++D  T++  +  C RL SL   KQ HA ++R    +D   
Sbjct: 248 SGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYV 307

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            SAL++ Y+K G  ++A+ VF+ +  +N +SW  LI G   +    ++VELF QM    M
Sbjct: 308 ASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELM 367

Query: 430 RPNHVTFLAVLSAC 443
             +      ++S C
Sbjct: 368 AIDQFALATLISGC 381



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 131/328 (39%), Gaps = 77/328 (23%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA----- 285
           ++  A  +R+      ++  + LH   + +G    VF+   L+  Y  CG++ DA     
Sbjct: 4   TQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLR 63

Query: 286 --------------------QG-------VFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
                               QG       +FD M  +    WNT+++GY       + L+
Sbjct: 64  ADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLE 123

Query: 319 LYYEMRDSGVKM-DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
            +  M  SG  + + FTF  +++ C  L   E A Q      +  F  D    +ALVD +
Sbjct: 124 TFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMF 183

Query: 378 SKWGRIEDARHVFDK-----MLCKN--------------------------VISWNALIA 406
            + G ++ A  +F +     + C+N                          V+SWN +IA
Sbjct: 184 VRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIA 243

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW------EIFQSMS 460
                GR  EA+ L  +M   G+R +  T+ + L+AC+R  L   GW      ++ +S+ 
Sbjct: 244 ALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACAR--LFSLGWGKQLHAKVIRSLP 301

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEA 488
              +I P     + +IEL  + G   EA
Sbjct: 302 ---QIDPYVA--SALIELYAKCGSFKEA 324



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 100/208 (48%), Gaps = 14/208 (6%)

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           +++ ++ +++ Y+K G + DA  +FD+M  ++V SWN L++GY    R  + +E F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 426 LNGMR-PNHVTFLAVLSACSRSGLSERGWEIFQSMSR-DHKIKPRAMHYACMIELLGREG 483
            +G   PN  TF  V+ +C   G  E   ++     + D    P       ++++  R G
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDV--ETALVDMFVRCG 187

Query: 484 LLDEA---FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540
            +D A   F+ I         +M A       ++  +E  +  AE+        + ++ +
Sbjct: 188 YVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAER-------DVVSWNM 240

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
           ++   + SG+++EA  ++  + RKG+R+
Sbjct: 241 MIAALSQSGRVREALGLVVEMHRKGVRL 268


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/636 (35%), Positives = 356/636 (55%), Gaps = 45/636 (7%)

Query: 101 IEKLVLNKRYREALELFEILEFE-GGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           I  L  + R REAL L  ++E    G  + S+TY + ++AC  L S+   K++ + ++ +
Sbjct: 242 IAALSQSGRVREALGL--VVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRS 299

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
             + D Y+ + ++ ++ +CG   +A+R+F+ + +RN VS  ++I G +    + ++  LF
Sbjct: 300 LPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELF 359

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
             +  E         AT+I        + +G+QLHS  LK G    + VS +LI +Y+KC
Sbjct: 360 NQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKC 419

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYAL------------------------------ 309
           G +++A+ VF  MSE+  V W ++I  Y+                               
Sbjct: 420 GDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYI 479

Query: 310 -HGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
            HG  E+ L +Y  M     V  D  T+  + R C  + + +   Q     V+ G  L++
Sbjct: 480 QHGAEEDGLKMYSAMLSQKDVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNV 539

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              +A +  YSK GRI +A+ +FD +  K+V+SWNA+I GY  HG G++A + F+ ML  
Sbjct: 540 SVANAAITMYSKCGRISEAQKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSK 599

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G +P++++++AVLS CS SGL + G   F  M+R H I P   H++CM++LLGR G L E
Sbjct: 600 GAKPDYISYVAVLSGCSHSGLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTE 659

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A  LI   P K T  +W ALL+AC+++GN EL + AA+ ++ ++     +Y++L  IY+ 
Sbjct: 660 AKDLIDKMPMKPTAEVWGALLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSD 719

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
           +GK  ++A+V + +R KG++  P  SW+EV+ + HVF + D SH Q   I  K+D +M +
Sbjct: 720 AGKSDDSAQVRKLMRDKGIKKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEK 779

Query: 608 ISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
           I+  GYV  E            R   +HSEKLAVAFG+++   W P+ I+++ RIC DCH
Sbjct: 780 IAHLGYVRTE----------SPRSEIHHSEKLAVAFGIMSLPAWMPIHIMKNLRICGDCH 829

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             IKLI+ VT RE V+RD  RFHHFK G CSCGDYW
Sbjct: 830 TVIKLISSVTDREFVIRDGVRFHHFKSGSCSCGDYW 865



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 224/460 (48%), Gaps = 20/460 (4%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           + L LF   +F G  DV +    AL+   +    +    R+FS +      P ++ RN +
Sbjct: 159 QLLGLFWKFDFWGDPDVET----ALVDMFVRCGYVDFASRLFSQIE----RPTIFCRNSM 210

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L  + +   +  A   F++M ER++VS NM+IA +  SG   EA  L +++  +     S
Sbjct: 211 LAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDS 270

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T+ + + A A L  +  GKQLH+  ++     + +V+ ALI++Y+KCGS ++A+ VF+ 
Sbjct: 271 TTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNS 330

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           + ++ +V W  +I G   +    ++++L+ +MR   + +D F  + +I  C     L   
Sbjct: 331 LQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLG 390

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           +Q H+  ++ G    IV +++L+  Y+K G +++A  VF  M  ++++SW ++I  Y   
Sbjct: 391 RQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQI 450

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G   +A E F+ M       N +T+ A+L A  + G  E G +++ +M     + P  + 
Sbjct: 451 GNIIKAREFFDGMATR----NAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVT 506

Query: 472 YACMIEL---LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
           Y  +      +G   L D+       A      ++  A +T     G +      A+KL+
Sbjct: 507 YVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRIS----EAQKLF 562

Query: 529 G-MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
             +  + + ++  ++  Y+  G  K+AA+    +  KG +
Sbjct: 563 DLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAK 602



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 145/314 (46%), Gaps = 32/314 (10%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           EP++   N ++  + + G + DA  LFD MP R++ S N +++G   +  +L+    F+ 
Sbjct: 68  EPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 222 LWEEFSDC-GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           +         + TF  ++++   L    +  QL     K  F  +  V  AL+DM+ +CG
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCG 187

Query: 281 -------------------------------SIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
                                           I+ A   F++M+E+  V WN +IA  + 
Sbjct: 188 YVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQ 247

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G   EAL L  EM   GV++D  T++  +  C RL SL   KQ HA ++R    +D   
Sbjct: 248 SGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYV 307

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            SAL++ Y+K G  ++A+ VF+ +  +N +SW  LI G   +    ++VELF QM    M
Sbjct: 308 ASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELM 367

Query: 430 RPNHVTFLAVLSAC 443
             +      ++S C
Sbjct: 368 AIDQFALATLISGC 381



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 131/328 (39%), Gaps = 77/328 (23%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA----- 285
           ++  A  +R+      ++  + LH   + +G    VF+   L+  Y  CG++ DA     
Sbjct: 4   TQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLR 63

Query: 286 --------------------QG-------VFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
                               QG       +FD M  +    WNT+++GY       + L+
Sbjct: 64  ADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLE 123

Query: 319 LYYEMRDSGVKM-DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
            +  M  SG  + + FTF  +++ C  L   E A Q      +  F  D    +ALVD +
Sbjct: 124 TFVSMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMF 183

Query: 378 SKWGRIEDARHVFDK-----MLCKN--------------------------VISWNALIA 406
            + G ++ A  +F +     + C+N                          V+SWN +IA
Sbjct: 184 VRCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIA 243

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW------EIFQSMS 460
                GR  EA+ L  +M   G+R +  T+ + L+AC+R  L   GW      ++ +S+ 
Sbjct: 244 ALSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACAR--LFSLGWGKQLHAKVIRSLP 301

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEA 488
              +I P     + +IEL  + G   EA
Sbjct: 302 ---QIDPYVA--SALIELYAKCGSFKEA 324



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 100/208 (48%), Gaps = 14/208 (6%)

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           +++ ++ +++ Y+K G + DA  +FD+M  ++V SWN L++GY    R  + +E F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 426 LNGMR-PNHVTFLAVLSACSRSGLSERGWEIFQSMSR-DHKIKPRAMHYACMIELLGREG 483
            +G   PN  TF  V+ +C   G  E   ++     + D    P       ++++  R G
Sbjct: 130 RSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDV--ETALVDMFVRCG 187

Query: 484 LLDEA---FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540
            +D A   F+ I         +M A       ++  +E  +  AE+        + ++ +
Sbjct: 188 YVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAER-------DVVSWNM 240

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
           ++   + SG+++EA  ++  + RKG+R+
Sbjct: 241 MIAALSQSGRVREALGLVVEMHRKGVRL 268


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/589 (39%), Positives = 347/589 (58%), Gaps = 12/589 (2%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           GF+V   T   LI+AC     +  +K++  + +S GF+    + N  +  + + G++ +A
Sbjct: 135 GFEVDGFTLSGLIAACCD--RVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREA 192

Query: 185 RRLFDEMPE-RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
             +F  M E R+ VS N +I       +  +A  L+ ++  +       T A+++ A   
Sbjct: 193 VSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTS 252

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE---DAQGVFDEMSEKTTVGW 300
           L+ +  G+Q H   +K GF  N  V   LID YSKCG  +   D++ VF E+     V W
Sbjct: 253 LDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPDLVVW 312

Query: 301 NTIIAGYALHG-YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           NT+I+GY+++   SEEA+  + +M+  G + D  +F  +   C+ L+S    KQ H   +
Sbjct: 313 NTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIHGLAI 372

Query: 360 R-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
           + H     I  N+AL+  Y K G ++DAR VFD+M   N +S+N +I GY  HG G EA+
Sbjct: 373 KSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHGTEAL 432

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478
            L+++ML +G+ PN +TF+AVLSAC+  G  + G E F +M    KI+P A HY+CMI+L
Sbjct: 433 LLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAEHYSCMIDL 492

Query: 479 LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538
           LGR G L+EA   I   P+K     WAALL ACR + N+ L + AA +L  M+P   + Y
Sbjct: 493 LGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVMQPLAATPY 552

Query: 539 VVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIY 598
           V+L N+Y  + K +E A V +++R K +R  P CSWIEVKK+ HVF++ D SH   +E+ 
Sbjct: 553 VMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVN 612

Query: 599 RKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV----LSYHSEKLAVAFGLINTSDWTPL 654
             ++ MM ++ K GYV ++K  +   DE  +      L +HSEKLAVAFGL++T D   L
Sbjct: 613 EYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEEL 672

Query: 655 QIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            +V++ RIC DCHNAIK ++ V GREI+VRD  RFH FKDG CSCGDYW
Sbjct: 673 VVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 130/448 (29%), Positives = 214/448 (47%), Gaps = 51/448 (11%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           EP+++  N ++  + +   +  AR+LFDE+P+ + VS N +I+G  D+ +   A +LF  
Sbjct: 71  EPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKR 130

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           + +   +    T + +I  +A  + + + KQLH  ++  GF     V+ A +  YSK G 
Sbjct: 131 MRKLGFEVDGFTLSGLI--AACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGL 188

Query: 282 IEDAQGVFDEMSE-KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           + +A  VF  M E +  V WN++I  Y  H    +AL LY EM   G K+D FT + ++ 
Sbjct: 189 LREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLN 248

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE---DARHVFDKMLCKN 397
             T L  L   +Q H  L++ GF  +    S L+DFYSK G  +   D+  VF ++L  +
Sbjct: 249 ALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEILSPD 308

Query: 398 VISWNALIAGYG-NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           ++ WN +I+GY  N    EEAV+ F QM   G RP+  +F+ V SACS      +  +I 
Sbjct: 309 LVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQCKQIH 368

Query: 457 QSMSRDHKIKPR-------------------------------AMHYACMIELLGREGLL 485
               + H    R                               A+ + CMI+   + G  
Sbjct: 369 GLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQHGHG 428

Query: 486 DEAFALIRG------APFKTTKNMWAALLTACRVNGNLELGK---FAAEKLYGMEPEKLS 536
            EA  L +       AP K T   + A+L+AC   G ++ G+      ++ + +EPE   
Sbjct: 429 TEALLLYQRMLDSGIAPNKIT---FVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEA-E 484

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           +Y  ++++   +GKL+EA   I  +  K
Sbjct: 485 HYSCMIDLLGRAGKLEEAERFIDAMPYK 512


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/620 (37%), Positives = 344/620 (55%), Gaps = 51/620 (8%)

Query: 76  YTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDA 135
           +++ L    +PD ++   +   C+ +  L   K  R+   +  +     GFD  S    +
Sbjct: 102 FSQMLTRGLMPDNRVLPSAVKACAGLSAL---KPARQVHGIASV----SGFDSDSFVQSS 154

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER- 194
           L+   I    IR+  RVF  M    FEPD+   + ++  + R G + +A+RLF EM +  
Sbjct: 155 LVHMYIKCNQIRDAHRVFDRM----FEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSG 210

Query: 195 ---NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
              NL+S N +IAG   SG Y EA L+FLD+     +    T ++++ A   LE + +G 
Sbjct: 211 VQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGI 270

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS------------------ 293
            +H   +K G   +  VS ALIDMY KC    +   VFD+M                   
Sbjct: 271 LIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNG 330

Query: 294 -----------------EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
                            E   V W ++IA  + +G   EAL+L+ EM+ +GVK +  T  
Sbjct: 331 QVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIP 390

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            ++  C  +A+L H K AH   +R G   D+   SAL+D Y+K GRI+ +R  FD +  K
Sbjct: 391 CLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTK 450

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           N++ WNA+IAGY  HG+ +EA+E+F+ M  +G +P+ ++F  VLSACS+SGL+E G   F
Sbjct: 451 NLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYF 510

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
            SMS  + I+ R  HYACM+ LL R G L++A+A+IR  P      +W ALL++CRV+ N
Sbjct: 511 NSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNN 570

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
           + LG+ AAEKL+ +EP    NY++L NIY S G   E   V   ++ KGLR  P CSWIE
Sbjct: 571 VSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIE 630

Query: 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYH 635
           VK + H+ L+GD+SH Q  +I   +D++ +E+ K GY PE   +L DV+EQ+ +++L  H
Sbjct: 631 VKNKVHMLLAGDKSHPQMTQIIENLDKLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGH 690

Query: 636 SEKLAVAFGLINTSDWTPLQ 655
           SEKLAV FGL+NT    PLQ
Sbjct: 691 SEKLAVVFGLLNTPPGYPLQ 710



 Score =  157 bits (398), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 123/477 (25%), Positives = 207/477 (43%), Gaps = 54/477 (11%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           S+ + ++  +++L TG   D ++  ++L  +       DA  + D +PE N+ S + +I 
Sbjct: 28  SLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIY 87

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
                  +  A   F  +        +R   + ++A AGL  +   +Q+H  A   GF  
Sbjct: 88  AFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDS 147

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           + FV  +L+ MY KC  I DA  VFD M E   V W+ ++A YA  G  +EA  L+ EM 
Sbjct: 148 DSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMG 207

Query: 325 DSGVK-----------------------------------MDHFTFSMIIRICTRLASLE 349
           DSGV+                                    D  T S ++     L  L 
Sbjct: 208 DSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLV 267

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
                H  +++ G   D   +SAL+D Y K     +   VFD+M   +V S NA I G  
Sbjct: 268 MGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLS 327

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            +G+ E ++ LF Q+   GM  N V++ ++++ CS++G      E+F+ M +   +KP +
Sbjct: 328 RNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREM-QIAGVKPNS 386

Query: 470 MHYACMIELLGR-----EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           +   C++   G       G     F+L RG    T   + +AL+      G ++  +   
Sbjct: 387 VTIPCLLPACGNIAALMHGKAAHCFSLRRG--ISTDVYVGSALIDMYAKCGRIQASRICF 444

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR--------MLPACS 573
           +   G+  + L  +  ++  Y   GK KEA E+   ++R G +        +L ACS
Sbjct: 445 D---GIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACS 498



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 2/120 (1%)

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
           +D    +++  + +  ASL   +QAHA +++ G   D    + L+  Y+      DA  V
Sbjct: 11  LDSVQHTILNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLV 70

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449
            D +   NV S++ LI  +    +   A+  F QML  G+ P++    + + AC  +GLS
Sbjct: 71  LDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKAC--AGLS 128


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/610 (36%), Positives = 364/610 (59%), Gaps = 26/610 (4%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +E+L LF  +  EG    G  T  ++++AC    S+  V    +++L    E     R+ 
Sbjct: 201 QESLRLFYAMNLEGTKPSGV-TLVSVLNAC----SMLPVGSATAFVLEQAMEVVSATRDN 255

Query: 171 VL-----LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
           VL       + R   +  AR  FD +   ++VS N + A  +      EA +LF  +  E
Sbjct: 256 VLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLE 315

Query: 226 FSDCGSRTFATMIRASAGLE---LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
                  TF T + A A        ++GK++ S   + G   +  V+ A ++MY+KCGS+
Sbjct: 316 GVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSL 375

Query: 283 EDAQGVFDEMS--EKTTVGWNTIIAGYALHGYSEEALDLYYEMR-DSGVKMDHFTFSMII 339
            DA+ VF+ +S   +  + WN+++A Y  HG  +EA +L+  M  +  VK +  TF  ++
Sbjct: 376 ADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVL 435

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KN 397
              T   S+   ++ HA +V +GF  D V  +AL++ Y+K G ++DA+ +FDK     ++
Sbjct: 436 DASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQED 495

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           VI+W +L+AGY  +G+ E A++LF  M   G+RPNH+TF++ L+AC+  G  E+G E+  
Sbjct: 496 VIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKLEQGCELLS 555

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN---MWAALLTACRVN 514
            M+ DH I P + H++C+++LLGR G LDEA  L+     +T++     W ALL AC+ +
Sbjct: 556 GMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLE----RTSQADVITWMALLDACKNS 611

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
             LE G+  AE++  ++PE  S+Y+VL ++Y ++G+  EAA + +T+  KG+R  P CS 
Sbjct: 612 KELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPGCSA 671

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLS 633
           +EV ++ H F +GD+SH +++EIY +++R+   I   GYV +   +L DV  E ++R+L 
Sbjct: 672 VEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKERLLM 731

Query: 634 YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
            HSEKLA+AFGL++T   +PL+++++ R+C DCH A KLI+ VTGR+I++RD+SR+HHF 
Sbjct: 732 RHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYHHFT 791

Query: 694 DGMCSCGDYW 703
            G CSCGDYW
Sbjct: 792 SGTCSCGDYW 801



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 220/450 (48%), Gaps = 38/450 (8%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP-- 192
           AL++AC  L ++   +R+ S +    FE +  + N ++ M+ +CG +IDA++ FD +P  
Sbjct: 12  ALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRA 71

Query: 193 -ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRA--SAGLELIS 248
            +R++V+ N +I+  + +G   EA  LF D+  + +    S TF +++ +   AGL  + 
Sbjct: 72  SKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLSLE 131

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF----DEMSEKTTVGWNTII 304
             + +H   +  G     FV  AL+D Y K GS++DA  VF    DE    + V  + +I
Sbjct: 132 DVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMI 191

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           +    +G+ +E+L L+Y M   G K    T   ++  C+ L        A A ++     
Sbjct: 192 SACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLP----VGSATAFVLEQAME 247

Query: 365 L-----DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVE 419
           +     D V  + L+  Y++   +  AR  FD +   +V+SWNA+ A Y  H R  EA+ 
Sbjct: 248 VVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALV 307

Query: 420 LFEQMLLNGMRPNHVTFLAVLSAC------SRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
           LFE+MLL G+RP+  TF+  L+AC      + S + +R     QS+  +  ++       
Sbjct: 308 LFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKR----IQSLLEEAGLEGDTAVAN 363

Query: 474 CMIELLGREGLLDEAFALI-RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532
             + +  + G L +A A+  R +P +     W ++L A    G+  LGK A E    ME 
Sbjct: 364 ATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAA---YGHHGLGKEAFELFQAMEA 420

Query: 533 EKL-----SNYVVLLNIYNSSGKLKEAAEV 557
           EKL       +V +L+   S   + +  E+
Sbjct: 421 EKLVKPNKVTFVAVLDASTSRTSIAQGREI 450



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/481 (26%), Positives = 229/481 (47%), Gaps = 28/481 (5%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACI--GLRSIREVKRVFSYM 156
           + I   + N   REAL+LF  ++ +G     S T+ +++ +C+  GL S+ +V+ +   +
Sbjct: 81  AMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRI 140

Query: 157 LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLF----DEMPERNLVSCNMIIAGMIDSGDY 212
           +  G E + ++R  ++  + + G + DA  +F    DE P  +LV+C+ +I+    +G  
Sbjct: 141 VGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWP 200

Query: 213 LEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM--GFGDNVFVSC 270
            E+  LF  +  E +     T  +++ A + L + S    +   A+++     DNV    
Sbjct: 201 QESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFVLEQAMEVVSATRDNVL-GT 259

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
            L+  Y++   +  A+  FD +     V WN + A Y  H    EAL L+  M   GV+ 
Sbjct: 260 TLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEGVRP 319

Query: 331 DHFTFSMIIRICTRLASLEHA---KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
              TF   +  C        +   K+  + L   G   D    +A ++ Y+K G + DAR
Sbjct: 320 SVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADAR 379

Query: 388 HVFDKM--LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM-RPNHVTFLAVLSACS 444
            VF+++    ++ I+WN+++A YG+HG G+EA ELF+ M    + +PN VTF+AVL A +
Sbjct: 380 AVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDAST 439

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM- 503
                 +G EI   +  +       +  A ++ +  + G LD+A A+      K++ N  
Sbjct: 440 SRTSIAQGREIHARVVSNGFESDTVIQNA-LLNMYAKCGSLDDAQAIFD----KSSSNQE 494

Query: 504 ----WAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
               W +L+      G  E  L  F   +  G+ P  ++ ++  L   N  GKL++  E+
Sbjct: 495 DVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHIT-FISALTACNHGGKLEQGCEL 553

Query: 558 I 558
           +
Sbjct: 554 L 554


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/652 (34%), Positives = 367/652 (56%), Gaps = 38/652 (5%)

Query: 89  QMKKPSAGICSQ-IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
            + +P    CS  I  L  +    EA++++  L+ E G       + A   AC       
Sbjct: 123 NIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQ-ERGIKPDMPVFLAAAKACAVSGDAL 181

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
            VK V       G   D+++ N ++  + +C  +  ARR+FD++  R++VS   + +  +
Sbjct: 182 RVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYV 241

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
             G   +   +F ++          T ++++ A A L+ +  GK++H  A++ G   N+F
Sbjct: 242 KCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLF 301

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA----------GYAL-------- 309
           V  AL+ +Y+KC S+ +A+ VFD M  +  V WN ++           G++L        
Sbjct: 302 VCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDG 361

Query: 310 -----------------HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
                            +G SEEA++++ +M+  G K +  T S I+  C+   +L   K
Sbjct: 362 VRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGK 421

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           + H  + RH    D+ + +AL+  Y+K G +  +R+VFD M  K+V++WN +I     HG
Sbjct: 422 EIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHG 481

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
            G+EA+ LF++MLL+ ++PN VTF  VLS CS S L E G +IF SM RDH ++P A HY
Sbjct: 482 NGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHY 541

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532
           +C++++  R G L+EA+  I+G P + T + W ALL ACRV  N+EL K +A+KL+ +EP
Sbjct: 542 SCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEP 601

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHV 592
               NYV L NI  ++    EA++V   ++ +G+   P CSW++V  + H F+ GD+S++
Sbjct: 602 NNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNI 661

Query: 593 QTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDW 651
           ++ +IY  +D ++ ++   GY P+   +L D+D++E+   L  HSEKLAVAFG++N +  
Sbjct: 662 ESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQ 721

Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + +++ ++ RIC DCHNAIK ++ V G  IVVRD+ RFHHFK+G CSC D W
Sbjct: 722 STIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 773



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 199/438 (45%), Gaps = 46/438 (10%)

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
           R++ + +  G    AR+LFD +P+ +  +C+ +I+ +   G   EA  ++  L E     
Sbjct: 103 RLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKP 162

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
               F    +A A        K++H  A + G   +VFV  ALI  Y KC  +E A+ VF
Sbjct: 163 DMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 222

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           D++  +  V W ++ + Y   G+  + +D++ EM  SGVK +  T S I+  C  L  L+
Sbjct: 223 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLK 282

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             K+ H   VRHG  +++   SALV  Y+K   + +AR VFD M  ++V+SWN ++  Y 
Sbjct: 283 SGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYF 342

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            +   E+   LF +M  +G+R +  T+ AV+  C  +G SE   E+F+ M +        
Sbjct: 343 KNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQK-------- 394

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK-FAAEKLY 528
                    +G                FK  +   +++L AC  + NL +GK        
Sbjct: 395 ---------MG----------------FKPNEITISSILPACSFSENLRMGKEIHCYVFR 429

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
             +   L++   LL +Y   G L  +  V   +RRK +      +W       +  +  +
Sbjct: 430 HWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDV-----VAW-------NTMIIAN 477

Query: 589 QSHVQTKEIYRKVDRMML 606
             H   KE     D+M+L
Sbjct: 478 AMHGNGKEALFLFDKMLL 495


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/616 (36%), Positives = 352/616 (57%), Gaps = 40/616 (6%)

Query: 124 GGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183
           GG    S+   AL   C  L + R+ ++V   M     + D      +++ +VR G +  
Sbjct: 191 GGVLSVSNALVALYMKCEALEATRDARKVLDEMP----DKDALTWTTMVVGYVRRGDVGA 246

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           AR +F+E+  +  V  N +I+G + SG  +EAF LF  +  E       TF +++ A A 
Sbjct: 247 ARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACAN 306

Query: 244 LELISVGKQLHS--CALKMGFGDN--VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
               + GK +H     L+  F     + V+ AL+ +YSKCG+I  A+ +FD M  K  V 
Sbjct: 307 AGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVS 366

Query: 300 WNTIIAGYA------------------------------LHG-YSEEALDLYYEMRDSGV 328
           WNTI++GY                               +HG +SE+AL L+  MR   V
Sbjct: 367 WNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDV 426

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
           K   +T++  I  C  L SL+H KQ H  LV+ GF     A +AL+  Y++ G +++A  
Sbjct: 427 KPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANL 486

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           +F  M   + +SWNA+I+  G HG G EA+ELF++M+  G+ P+ ++FL VL+AC+ SGL
Sbjct: 487 MFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGL 546

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
            + G++ F+SM RD  I P   HY  +I+LLGR G + EA  LI+  PF+ T ++W A+L
Sbjct: 547 VDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAIL 606

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
           + CR +G++ELG  AA++L+ M P+    Y++L N Y+++G+  +AA V + +R +G++ 
Sbjct: 607 SGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKK 666

Query: 569 LPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQ 627
            P CSWIE   + HVF+ GD  H +  ++Y+ ++ +   + K GYVP+ K +L D++  Q
Sbjct: 667 EPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLHDMEPHQ 726

Query: 628 EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDAS 687
           ++ +L  HSE+LAV FGL+       + ++++ RIC DCH  +  ++   GREIVVRD  
Sbjct: 727 KEHILFAHSERLAVGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMSKAVGREIVVRDVR 786

Query: 688 RFHHFKDGMCSCGDYW 703
           RFHHFKDG CSCG+YW
Sbjct: 787 RFHHFKDGECSCGNYW 802



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 131/467 (28%), Positives = 198/467 (42%), Gaps = 91/467 (19%)

Query: 179 GMMIDARRLFDEMPE--RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFA 235
           G +  A   FD +P+  R+ V  N +I+    +     A  +F  L    S      +F 
Sbjct: 102 GRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFT 161

Query: 236 TMIRASAGLELISVG--KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE---DAQGVFD 290
            ++ A+  L  ISV    QL    LK G G  + VS AL+ +Y KC ++E   DA+ V D
Sbjct: 162 ALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLD 221

Query: 291 EMSEK-----TT--------------------------VGWNTIIAGYALHGYSEEALDL 319
           EM +K     TT                          V WN +I+GY   G   EA +L
Sbjct: 222 EMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFEL 281

Query: 320 YYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL----DIVANSALVD 375
           +  M    V +D FTF+ ++  C       H K  H  + R          +  N+ALV 
Sbjct: 282 FRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVT 341

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            YSK G I  AR +FD M  K+V+SWN +++GY      ++AVE+FE+M       N ++
Sbjct: 342 LYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYK----NELS 397

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL----------------- 478
           ++ ++S     G SE   ++F  M R   +KP    YA  I                   
Sbjct: 398 WMVMVSGYVHGGFSEDALKLFNRM-RAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHL 456

Query: 479 --LGREGLLDEAFALI----RGAPFKTTKNM-----------WAALLTACRVNGN----L 517
             LG EG      ALI    R    K    M           W A+++A   +G+    L
Sbjct: 457 VQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREAL 516

Query: 518 EL-GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           EL  +  AE +Y   P+++S ++ +L   N SG + E  +   +++R
Sbjct: 517 ELFDRMVAEGIY---PDRIS-FLTVLTACNHSGLVDEGFQYFESMKR 559



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 106/232 (45%), Gaps = 39/232 (16%)

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSE--KTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
           + +L+  Y+  G +  A   FD + +  + TV  N +I+ YA   ++  A+ ++  +  S
Sbjct: 91  ATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPAVAVFRSLLAS 150

Query: 327 G-VKMDHFTFSMIIRICTRLA--SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
           G ++ D ++F+ ++     L   S+ H  Q    +++ G G  +  ++ALV  Y K   +
Sbjct: 151 GSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNALVALYMKCEAL 210

Query: 384 E---DARHVFDKMLCKNVISWNALIAGY---GNHGRGE---------------------- 415
           E   DAR V D+M  K+ ++W  ++ GY   G+ G                         
Sbjct: 211 EATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMISGYV 270

Query: 416 ------EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
                 EA ELF +M+L  +  +  TF +VLSAC+ +G    G  +   ++R
Sbjct: 271 HSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITR 322



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 96/202 (47%), Gaps = 13/202 (6%)

Query: 112 EALELFEILEFEGGFDVGSS--TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           +AL+LF  +  E   DV     TY   ISAC  L S++  K++  +++  GFE      N
Sbjct: 413 DALKLFNRMRAE---DVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGN 469

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+ RCG + +A  +F  MP  + VS N +I+ +   G   EA  LF  +  E    
Sbjct: 470 ALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYP 529

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGF----GDNVFVSCALIDMYSKCGSIEDA 285
              +F T++ A     L+  G Q    ++K  F    G++ +    LID+  + G I +A
Sbjct: 530 DRISFLTVLTACNHSGLVDEGFQYFE-SMKRDFGIIPGEDHYTR--LIDLLGRAGRIGEA 586

Query: 286 QGVFDEMS-EKTTVGWNTIIAG 306
           + +   M  E T   W  I++G
Sbjct: 587 RDLIKTMPFEPTPSIWEAILSG 608


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/616 (37%), Positives = 326/616 (52%), Gaps = 71/616 (11%)

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           +G   D ++ + +L  ++R G    AR +FD MPE+N+V  + +IAG    GD   A+ L
Sbjct: 46  SGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGL 105

Query: 219 FLDL-----------WEEFSDCGSRT------------------------FATMIRASAG 243
              +           W       +R+                         +  + A   
Sbjct: 106 LEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGD 165

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS---------- 293
           ++ +SVGKQ+H   +K G   +  V  ALIDMY KCG  ++   VF E S          
Sbjct: 166 VKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNAL 225

Query: 294 -------------------------EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
                                    E   V W +I+A    +G   EA+DL+  M+  GV
Sbjct: 226 VAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGV 285

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
           + +  T   ++     +A+L H + AH   +R GF  D+   SALVD Y+K G+   AR 
Sbjct: 286 EPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHART 345

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           +FD M  +NV+SWNA+I GY  HG    AV+LF  M     +P+ VTF  VL ACS++GL
Sbjct: 346 IFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGL 405

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
           +E G   F  M + H I PR  HYACM+ LLGR G LDEA+ LI   PF+    +W +LL
Sbjct: 406 TEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLL 465

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
            +CRV GN+ L + AAEKL+ +EP    NYV+L NIY S         V   ++  GL+ 
Sbjct: 466 GSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKK 525

Query: 569 LPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE 628
              CSWIE+K + H+ L+GD SH     I  K++++ +E+++ G+ P    +L DV+EQE
Sbjct: 526 EKGCSWIEIKNKVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQE 585

Query: 629 Q-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDAS 687
           +  +L+ HSEKLAVA GLI+T   TPL+++++ RIC DCH A+K I+    REI VRD +
Sbjct: 586 KDNILAVHSEKLAVALGLISTRPGTPLRVIKNLRICGDCHEAMKFISSFEQREISVRDTN 645

Query: 688 RFHHFKDGMCSCGDYW 703
           RFHHFKDG CSCGDYW
Sbjct: 646 RFHHFKDGKCSCGDYW 661



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 152/340 (44%), Gaps = 40/340 (11%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           GF   ++     +SA   ++ +   K+V  Y++  G   D  +   ++ M+ +CG   + 
Sbjct: 148 GFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEI 207

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF------------------------- 219
            R+F E    ++ SCN ++AG+  +    EA LLF                         
Sbjct: 208 VRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQN 267

Query: 220 ------LDLWEEFSDCG----SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
                 +DL+      G    S T   ++ A A +  +  G+  H  +L+ GF  +V+V 
Sbjct: 268 GRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVG 327

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            AL+DMY+KCG    A+ +FD M  +  V WN +I GYA+HG +  A+ L+  M+    K
Sbjct: 328 SALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQK 387

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARH 388
            D  TF+ ++  C++    E  ++    + + HG    +   + +V    + G++++A  
Sbjct: 388 PDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYD 447

Query: 389 VFDKM-LCKNVISWNALIAG---YGNHGRGEEAVELFEQM 424
           + ++M    +   W +L+     YGN    E A E   Q+
Sbjct: 448 LINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQL 487



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 129/263 (49%), Gaps = 36/263 (13%)

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           + + LH+ A+  G  ++ FV+ +L+  Y + G+   A+ VFD M EK  VGW+ +IAGY+
Sbjct: 35  LARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNVVGWSALIAGYS 94

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR------------------------ 344
             G +E A  L  +MR +GV+ +  T++ ++    R                        
Sbjct: 95  ARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVRMHSEGFFPDAT 154

Query: 345 -----------LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
                      +  +   KQ H  +V+ G  LD    +AL+D Y K GR ++   VF + 
Sbjct: 155 GVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMYGKCGRADEIVRVFHES 214

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
              +V S NAL+AG   + +  EA+ LF + +  G+  N V++ ++++ C ++G      
Sbjct: 215 SHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAV 274

Query: 454 EIFQSMSRDHKIKPRAMHYACMI 476
           ++F++M +   ++P ++   C++
Sbjct: 275 DLFRTM-QSIGVEPNSVTIPCVL 296



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 8/164 (4%)

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378
           LY+ +R      D       ++ C    +   A+  HA  V  G   D    S+L+  Y 
Sbjct: 7   LYHFLRHVSFPPDPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVASSLLHSYI 63

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
           + G    AR VFD+M  KNV+ W+ALIAGY   G  E A  L EQM   G+ PN +T+  
Sbjct: 64  RLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNG 123

Query: 439 VLSACSRSGLSERGWEIFQSMSRDHK--IKPRAMHYACMIELLG 480
           ++S  +RSG   R  +   ++ R H     P A   +C +  +G
Sbjct: 124 LVSGLNRSG---RALDAVTALVRMHSEGFFPDATGVSCALSAVG 164



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 100/210 (47%), Gaps = 5/210 (2%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N R  EA++LF  ++   G +  S T   ++ A   + ++   +    + L  GF  D
Sbjct: 265 VQNGRDLEAVDLFRTMQ-SIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHD 323

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           +Y+ + ++ M+ +CG    AR +FD MP RN+VS N +I G    GD   A  LF  + +
Sbjct: 324 VYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQK 383

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS--CALIDMYSKCGSI 282
                   TF  ++ A +   L   G++  +  ++ G G +  +     ++ +  + G +
Sbjct: 384 CKQKPDLVTFTCVLGACSQAGLTEEGRRYFN-EMQQGHGISPRMEHYACMVTLLGRSGKL 442

Query: 283 EDAQGVFDEMS-EKTTVGWNTIIAGYALHG 311
           ++A  + +EM  E  +  W +++    ++G
Sbjct: 443 DEAYDLINEMPFEPDSCIWGSLLGSCRVYG 472


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/634 (36%), Positives = 362/634 (57%), Gaps = 31/634 (4%)

Query: 99  SQIEKLVLNKRYREALE-LFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           + I  LV   R  EA++ L++++    G      T+ + + AC  L  +   + V +++L
Sbjct: 230 TMISLLVQGGRCEEAVQVLYDMVAL--GVRPDGVTFASALPACSRLELLGVGREVHAFVL 287

Query: 158 -STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE--RNLVSCNMIIAGMIDSGDYLE 214
                  + ++ + ++ M+     +  ARR+FD +PE  R L   N +I G    G   E
Sbjct: 288 KDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDE 347

Query: 215 AFLLFLDLWEEFSDCGSR--TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCAL 272
             +      E  + C     T A ++ A A  E+ +  + +H   +K     N FV  AL
Sbjct: 348 EAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNAL 407

Query: 273 IDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR-----DSG 327
           +DMY++ G +++A  +F  +  +  V WNT+I G  + G   EA  L  EM+      SG
Sbjct: 408 MDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASG 467

Query: 328 VKM---------------DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
             M               ++ T   ++  C  LA+    K+ H   VRH    D+   SA
Sbjct: 468 ETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSA 527

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRP 431
           LVD Y+K G +  AR VFD++  +NVI+WN LI  YG HG G+EA+ LF++M+ NG   P
Sbjct: 528 LVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATP 587

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           N VTF+A L+ACS SGL +RG E+FQ M RD+  +P    +AC++++LGR G LDEA+ +
Sbjct: 588 NEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGI 647

Query: 492 IRG-APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
           I   AP +   + W+ +L ACR++ N++LG+ AAE+L+ +EP++ S+YV+L NIY+++G 
Sbjct: 648 ISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGL 707

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
            + + EV   +R++G+   P CSWIE+    H F++G+ +H ++ +++  +D +   + +
Sbjct: 708 WENSTEVRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDALWERMRR 767

Query: 611 HGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
            GYVP+   +L DVDE E+  +L YHSEKLA+AFGL+       +++ ++ R+C DCH A
Sbjct: 768 EGYVPDTSCVLHDVDEAEKAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNLRVCNDCHEA 827

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            K I+ + GREIV+RD  RFHHF+DG CSCGDYW
Sbjct: 828 AKFISRMVGREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 142/533 (26%), Positives = 237/533 (44%), Gaps = 74/533 (13%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGL--RSIREVKRVFSYM 156
           S I  L L +R+  AL+     +     +V S T  +++ AC  L  +  R  +   ++ 
Sbjct: 123 SLISALCLFRRWGHALDALR--DMLADHEVSSFTLVSVLLACSHLADQGHRLGREAHAFA 180

Query: 157 LSTGF---EPDLYMRNRVLLMHVRCGMMIDARRLF--DEMPERNLVSCNMIIAGMIDSGD 211
           L  GF     + +  N +L M+ R G++ DA+RLF        +LV+ N +I+ ++  G 
Sbjct: 181 LKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGR 240

Query: 212 YLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSC 270
             EA  +  D+          TFA+ + A + LEL+ VG+++H+  LK      N FV+ 
Sbjct: 241 CEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVAS 300

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSE--KTTVGWNTIIAGYALH-GYSEEALDLYYEMR-DS 326
           AL+DMY+    +  A+ VFD + E  +    WN +I GYA H G  EEA++L+  M  ++
Sbjct: 301 ALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEA 360

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           G      T + ++  C R       +  H  +V+     +    +AL+D Y++ GR+++A
Sbjct: 361 GCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEA 420

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL------------------NG 428
             +F  +  ++++SWN LI G    G   EA +L  +M L                  +G
Sbjct: 421 HTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDG 480

Query: 429 MR--PNHVTFLAVLSACSRSGLSERGWEIFQSMSR------------------------- 461
            R  PN++T + +L  C+      RG EI     R                         
Sbjct: 481 QRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLAL 540

Query: 462 -----DHKIKPRAMHYACMIELLGREGLLDEAFALIRG--APFKTTKN--MWAALLTACR 512
                D   +   + +  +I   G  GL DEA AL     A  + T N   + A L AC 
Sbjct: 541 ARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACS 600

Query: 513 VNG----NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            +G     LEL +   ++ YG EP    +  V +++   +G+L EA  +I ++
Sbjct: 601 HSGLVDRGLELFQ-GMKRDYGFEPTPYLHACV-VDVLGRAGRLDEAYGIISSM 651



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/293 (24%), Positives = 141/293 (48%), Gaps = 13/293 (4%)

Query: 238 IRASAGLELISVGKQLHSCALKMGF--GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE- 294
           I+++A L      + +H  +L+          VS AL+  Y++CG ++ A  +F      
Sbjct: 55  IKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALALFAATPPD 114

Query: 295 -KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH--A 351
            +  V +N++I+   L      ALD   +M  +  ++  FT   ++  C+ LA   H   
Sbjct: 115 LRDAVSYNSLISALCLFRRWGHALDALRDML-ADHEVSSFTLVSVLLACSHLADQGHRLG 173

Query: 352 KQAHAGLVRHGF---GLDIVANSALVDFYSKWGRIEDARHVF--DKMLCKNVISWNALIA 406
           ++AHA  ++HGF   G +    +AL+  Y++ G ++DA+ +F        ++++WN +I+
Sbjct: 174 REAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMIS 233

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
                GR EEAV++   M+  G+RP+ VTF + L ACSR  L   G E+   + +D  + 
Sbjct: 234 LLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLA 293

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK-NMWAALLTACRVNGNLE 518
             +   + ++++      +  A  +    P    +  MW A++     +G ++
Sbjct: 294 ANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMD 346


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/605 (36%), Positives = 351/605 (58%), Gaps = 40/605 (6%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           AL   C    + R+ ++V   M +     D      +++ +VR G +  AR +F+E+  +
Sbjct: 202 ALYMKCESPEATRDARKVLDEMPNK----DDLTWTTMVVGYVRRGDVGAARSVFEEVDGK 257

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
             V  N +I+G + SG  +EAF LF  +  E       TF +++ A A + L + GK +H
Sbjct: 258 FDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVH 317

Query: 255 SCALKMGFG----DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA-- 308
              +++         + V+ AL+  YSKCG+I  A+ +FD M+ K  V WNTI++GY   
Sbjct: 318 GQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVES 377

Query: 309 ----------------------------LH-GYSEEALDLYYEMRDSGVKMDHFTFSMII 339
                                       +H G++E+AL L+ +MR   VK   +T++  I
Sbjct: 378 SCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAI 437

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
             C  L +L+H KQ H  +V+ GF     A +AL+  Y++ G +++A  +F  M   + +
Sbjct: 438 AACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSV 497

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           SWNA+I+  G HG G EA+ELF++M+  G+ P+ ++FL VL+AC+ SGL + G+  F+SM
Sbjct: 498 SWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESM 557

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
            RD  I P   HY  +I+LLGR G + EA  LI+  PF+ T ++W A+L+ CR +G++EL
Sbjct: 558 KRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMEL 617

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
           G  AA++L+ M P+    Y++L N Y+++G   +AA V + +R +G++  P CSWIE   
Sbjct: 618 GAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGN 677

Query: 580 QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEK 638
           + HVFL GD  H +  E+Y+ ++ +  ++ K GYVP+ K +L D++  Q++ +L  HSE+
Sbjct: 678 KVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSER 737

Query: 639 LAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCS 698
           LAV FGL+N      + ++++ RIC DCH AI  ++   GREIVVRD  RFHHFKDG CS
Sbjct: 738 LAVGFGLLNLPPGATVTVLKNLRICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECS 797

Query: 699 CGDYW 703
           CG+YW
Sbjct: 798 CGNYW 802



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 160/370 (43%), Gaps = 62/370 (16%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYM--LSTGFEPD--LYM 167
           EA ELF  +  E    +   T+ +++SAC  +      K V   +  L   F P+  L +
Sbjct: 277 EAFELFRRMVLER-VPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPV 335

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS------------------ 209
            N ++  + +CG +  ARR+FD M  +++VS N I++G ++S                  
Sbjct: 336 NNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNE 395

Query: 210 ------------GDYLE-AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256
                       G + E A  LF  +  E       T+A  I A   L  +  GKQLH  
Sbjct: 396 LSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQLHGH 455

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
            +++GF  +     ALI MY++CG++++A  +F  M    +V WN +I+    HG+  EA
Sbjct: 456 IVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREA 515

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF--------GLDIV 368
           L+L+  M   G+  D  +F  ++  C            H+GLV  GF           I+
Sbjct: 516 LELFDRMVAEGIYPDRISFLTVLTACN-----------HSGLVDEGFRYFESMKRDFGII 564

Query: 369 AN----SALVDFYSKWGRIEDARHVFDKMLCKNVIS-WNALIAGYGNHGRGEEAVELFEQ 423
                 + L+D   + GRI +AR +   M  +   S W A+++G    G  E      +Q
Sbjct: 565 PGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQ 624

Query: 424 MLLNGMRPNH 433
           +    M P H
Sbjct: 625 LF--KMTPQH 632


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/605 (34%), Positives = 347/605 (57%), Gaps = 36/605 (5%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +++ AC  L+ ++  K +  + +  G   D+++   ++ ++  C  + +A+ +FD MP R
Sbjct: 348 SILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHR 407

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           N+V+ N + +  ++ G   +   +F ++          T  +++ A + L+ +  GK +H
Sbjct: 408 NVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIH 467

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY------- 307
             A++ G  ++VFV  AL+ +Y+KC  + +AQ VFD +  +    WN I+  Y       
Sbjct: 468 GFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYE 527

Query: 308 -ALHGYS---------------------------EEALDLYYEMRDSGVKMDHFTFSMII 339
             L+ +S                           EEA++++ +M+  G K D  T   I+
Sbjct: 528 KGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSIL 587

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
           R C+    L   K+ H  + RH    D+   +ALVD Y+K G +  +R+VFD M  K+V 
Sbjct: 588 RACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVF 647

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           SWN +I   G HG G+EA+ LFE+MLL+ ++P+  TF  VLSACS S L E G +IF SM
Sbjct: 648 SWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSM 707

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
           SRDH ++P A HY C++++  R G L+EA+  I+  P + T   W A L  CRV  N+EL
Sbjct: 708 SRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVEL 767

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
            K +A+KL+ ++P   +NYV L NI  ++    EA+++ + ++ +G+   P CSW  V  
Sbjct: 768 AKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGN 827

Query: 580 QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEK 638
           + H F++GD+S++++ +IY  +D +  +I   GY P+   +L D+D++E+   L  HSEK
Sbjct: 828 RVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKAESLCNHSEK 887

Query: 639 LAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCS 698
           LAVAFG++N +  + +++ ++ RIC DCHNAIK ++ V G  IVVRD+ RFHHFK+G CS
Sbjct: 888 LAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRFHHFKNGNCS 947

Query: 699 CGDYW 703
           C D+W
Sbjct: 948 CKDFW 952



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 241/462 (52%), Gaps = 27/462 (5%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T  +++  C  L+ ++  K +  +++  G   D+++ +  +  + +C  + +A+ +FD M
Sbjct: 143 TVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLM 202

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P R++V+ N + +  ++ G   +   +F ++  +       T + ++ A + L+ +  GK
Sbjct: 203 PHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGK 262

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            +H  ALK G  +NVFVS AL+++Y  C  + +AQ VFD M  +  + WN++ + Y   G
Sbjct: 263 AIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCG 322

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
           + ++ L+++ EM  +GVK D    S I+  C++L  L+  K  H   V+HG   D+   +
Sbjct: 323 FPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCT 382

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           ALV+ Y+    + +A+ VFD M  +NV++WN+L + Y N G  ++ + +F +M+LNG++P
Sbjct: 383 ALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKP 442

Query: 432 NHVTFLAVLSACS-----RSGLSERGWEIFQSMSRDHKIKPRAMHYAC--MIELLGREGL 484
           + VT L++L ACS     +SG    G+ +   M  D         + C  ++ L  +   
Sbjct: 443 DLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVED--------VFVCNALLSLYAKCVC 494

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY--GMEPEKLSNYVVLL 542
           + EA  +    P +   + W  +LTA   N   E G +   ++    ++ ++++  VV+ 
Sbjct: 495 VREAQVVFDLIPHREVAS-WNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIG 553

Query: 543 NIYNSSGKLKEAAEVIRTLRRKGLR--------MLPACSWIE 576
               +S +++EA E+ R ++  G +        +L ACS  E
Sbjct: 554 GCVKNS-RIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSE 594



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 216/439 (49%), Gaps = 24/439 (5%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G       + A+  AC   R   +VK+        G   D+ + N  +  + +C  +  A
Sbjct: 35  GIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGA 94

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           RR+FD++  R++V+ N + A  ++ G   +   +F  +          T ++++   + L
Sbjct: 95  RRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDL 154

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
           + +  GK++H   ++ G  ++VFVS A ++ Y+KC  + +AQ VFD M  +  V WN++ 
Sbjct: 155 QDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLS 214

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           + Y   G+ ++ L+++ EM   GVK D  T S I+  C+ L  L+  K  H   ++HG  
Sbjct: 215 SCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMV 274

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            ++  ++ALV+ Y     + +A+ VFD M  +NVI+WN+L + Y N G  ++ + +F +M
Sbjct: 275 ENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREM 334

Query: 425 LLNGMRPNHVTFLAVLSACS-----RSGLSERGWEIFQSMSRDHKIKPRAMHYAC--MIE 477
            LNG++P+ +   ++L ACS     +SG +  G+ +   M  D         + C  ++ 
Sbjct: 335 GLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVED--------VFVCTALVN 386

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE---LGKFAAEKLYGMEPEK 534
           L      + EA  +    P +     W + L++C VN       L  F    L G++P+ 
Sbjct: 387 LYANCLCVREAQTVFDLMPHRNVVT-WNS-LSSCYVNCGFPQKGLNVFREMVLNGVKPD- 443

Query: 535 LSNYVVLLNIYNSSGKLKE 553
               V +L+I ++   L++
Sbjct: 444 ---LVTMLSILHACSDLQD 459



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 106/235 (45%), Gaps = 6/235 (2%)

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           HG   EA+ +Y   R  G+K D   F  + + C         KQ H    R G   D+  
Sbjct: 18  HGLPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSI 77

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            +A +  Y K   +E AR VFD ++ ++V++WN+L A Y N G  ++ + +F +M LN +
Sbjct: 78  GNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKV 137

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
           + N +T  ++L  CS     + G EI   + R H +       +  +    +   + EA 
Sbjct: 138 KANPLTVSSILPGCSDLQDLKSGKEIHGFVVR-HGMVEDVFVSSAFVNFYAKCLCVREAQ 196

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLE---LGKFAAEKLYGMEPEKLSNYVVL 541
            +    P +     W + L++C VN       L  F    L G++P+ ++   +L
Sbjct: 197 TVFDLMPHRDVVT-WNS-LSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCIL 249



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 102/215 (47%), Gaps = 5/215 (2%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N R  EA+E+F  ++   GF    +T  +++ AC     +R  K +  Y+     + D
Sbjct: 556 VKNSRIEEAMEIFRKMQ-TMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKDWD 614

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           L   N ++ M+ +CG +  +R +FD MP +++ S N +I      G+  EA  LF  +  
Sbjct: 615 LARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLL 674

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALK--MGFGDNVFVSCALIDMYSKCGSI 282
                 S TF  ++ A +   L+  G Q+ +   +  +   +    +C ++D+YS+ G +
Sbjct: 675 SMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTC-VVDIYSRAGCL 733

Query: 283 EDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEA 316
           E+A G    M  E T + W   +AG  ++   E A
Sbjct: 734 EEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELA 768


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/626 (34%), Positives = 352/626 (56%), Gaps = 36/626 (5%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           ALE + +     G +    T+ ++  +C  +R   E K+V +++L  G E + ++   ++
Sbjct: 112 ALEYY-VHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLI 170

Query: 173 LMHVRCGMMIDA-------------------------------RRLFDEMPERNLVSCNM 201
            M+ + G +++A                               R LFDE+P R++VS N 
Sbjct: 171 NMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNA 230

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA-GLELISVGKQLHSCALKM 260
           +I+G   SG   EA   F ++          T  +++ A A     + +G  + S     
Sbjct: 231 MISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDR 290

Query: 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY 320
           G G N+ +   LIDMY KCG +E+A  +F+++ +K  V WN +I GY      +EAL L+
Sbjct: 291 GLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLF 350

Query: 321 YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD--IVANSALVDFYS 378
             M  S +  +  TF  I+  C  L +L+  K  HA + ++   +   +   ++L+D Y+
Sbjct: 351 RRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYA 410

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
           K G +  A+ +FD M  K++ +WNA+I+G+  HG  + A+ LF +M   G  P+ +TF+ 
Sbjct: 411 KCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVG 470

Query: 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK 498
           VL+AC  +GL   G   F SM +D+K+ P+  HY CMI+L GR GL DEA  L++    K
Sbjct: 471 VLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMK 530

Query: 499 TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVI 558
               +W +LL ACR++  +EL +  A+ L+ +EPE  S YV+L NIY  +G+ ++ A++ 
Sbjct: 531 PDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIR 590

Query: 559 RTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEK 618
             L    ++ +P CS IEV    H FL GD+ H Q+ EIY+ +D + + + K G+VP+  
Sbjct: 591 TRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTS 650

Query: 619 TLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVT 677
            +L D+DE+ ++ VLS+HSEKLA+AFGLI+T   T ++I+++ R+C +CH+A KLI+ + 
Sbjct: 651 EVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIF 710

Query: 678 GREIVVRDASRFHHFKDGMCSCGDYW 703
            REI+ RD +RFHHFKDG CSC DYW
Sbjct: 711 NREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 120/502 (23%), Positives = 227/502 (45%), Gaps = 76/502 (15%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC--GMMIDARRLFDEMP 192
            L+S C   ++++ +K++ S ++ TG     +  ++++        G +  A  LF  + 
Sbjct: 33  TLLSNC---KTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIR 89

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
             N V  N +I G+  S     A   ++ +    ++    TF ++ ++   +     GKQ
Sbjct: 90  NPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQ 149

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGS------------------------------- 281
           +H+  LK+G   N FV  +LI+MY++ G                                
Sbjct: 150 VHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGF 209

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           +++A+ +FDE+  +  V WN +I+GYA  G  EEA+  + EMR + V  +  T   ++  
Sbjct: 210 LDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSA 269

Query: 342 CTRL-ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
           C +  +SL+      + +   G G +I   + L+D Y K G +E+A ++F+K+  KNV+S
Sbjct: 270 CAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVS 329

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           WN +I GY +    +EA+ LF +M+ + + PN VTFL++L AC+  G  + G  +   + 
Sbjct: 330 WNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVD 389

Query: 461 RDHK-IKPRAMHYACMIELLGREGLLDEA------------------------------- 488
           ++ K +K     +  +I++  + G L  A                               
Sbjct: 390 KNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTA 449

Query: 489 ---FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLL 542
              F+ +    F      +  +LTAC+  G L LG+     +   Y + P KL +Y  ++
Sbjct: 450 LGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSP-KLPHYGCMI 508

Query: 543 NIYNSSGKLKEAAEVIRTLRRK 564
           +++  +G   EA  +++ +  K
Sbjct: 509 DLFGRAGLFDEAETLVKNMEMK 530



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 161/338 (47%), Gaps = 37/338 (10%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKR-VFSYMLSTGFEPDLYM 167
           R  EA+  FE +          ST  +++SAC    S  ++   V S++   G   ++ +
Sbjct: 240 RVEEAMAFFEEMR-RAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRL 298

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            N ++ M+V+CG + +A  LF+++ ++N+VS N++I G      Y EA  LF  + +   
Sbjct: 299 VNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNI 358

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALK--MGFGDNVFVSCALIDMYSKCGSIEDA 285
           D    TF +++ A A L  + +GK +H+   K      + V +  +LIDMY+KCG +  A
Sbjct: 359 DPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVA 418

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
           + +FD M+ K+   WN +I+G+A+HG+++ AL L+  M   G   D  TF  ++  C   
Sbjct: 419 KRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACK-- 476

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
                    HAGL+                     GR   +  + D  +   +  +  +I
Sbjct: 477 ---------HAGLL-------------------SLGRRYFSSMIQDYKVSPKLPHYGCMI 508

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
             +G  G  +EA  L + M    M+P+   + ++L AC
Sbjct: 509 DLFGRAGLFDEAETLVKNM---EMKPDGAIWCSLLGAC 543



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 106/441 (24%), Positives = 176/441 (39%), Gaps = 86/441 (19%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDM--YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           KQ+HS  +K G  +  F    LI+    S  G +  A  +F  +     V WN +I G +
Sbjct: 45  KQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLS 104

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
                  AL+ Y  M  SG + + +TF  I + CT++      KQ HA +++ G   +  
Sbjct: 105 SSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAF 164

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL------------------------ 404
            +++L++ Y++ G + +AR VFDK   ++ +S+ AL                        
Sbjct: 165 VHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRD 224

Query: 405 -------IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
                  I+GY   GR EEA+  FE+M    + PN  T L+VLSAC++SG S +     +
Sbjct: 225 VVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVR 284

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN--------------- 502
           S   D  +         +I++  + G L+EA  L      K   +               
Sbjct: 285 SWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYK 344

Query: 503 -------------------MWAALLTACRVNGNLELGKFA---AEKLYGMEPEKLSNYVV 540
                               + ++L AC   G L+LGK+     +K        ++ +  
Sbjct: 345 EALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVALWTS 404

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRK 600
           L+++Y   G L  A  +   +  K L      +W       +  +SG   H  T      
Sbjct: 405 LIDMYAKCGDLAVAKRIFDCMNTKSL-----ATW-------NAMISGFAMHGHTDTALGL 452

Query: 601 VDRMMLEISKHGYVPEEKTLL 621
             RM  E    G+VP++ T +
Sbjct: 453 FSRMTSE----GFVPDDITFV 469



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/254 (21%), Positives = 115/254 (45%), Gaps = 21/254 (8%)

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF--YSKWGRIEDARH 388
           DH + +++    +   +L+  KQ H+ +++ G      A S L++F   S  G +  A  
Sbjct: 28  DHPSLTLL----SNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALS 83

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           +F  +   N + WN +I G  +      A+E +  M+ +G  PN  TF ++  +C++   
Sbjct: 84  LFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRG 143

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
           +  G ++   + +   ++  A  +  +I +  + G L  A  +   +  +   + + AL+
Sbjct: 144 AHEGKQVHAHVLK-LGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVS-FTALI 201

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG-- 565
           T     G L+     A +L+   P + + ++  +++ Y  SG+++EA      +RR    
Sbjct: 202 TGYASKGFLD----EARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVT 257

Query: 566 ------LRMLPACS 573
                 L +L AC+
Sbjct: 258 PNVSTMLSVLSACA 271


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/663 (35%), Positives = 363/663 (54%), Gaps = 72/663 (10%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSI--REVKRVFSYMLSTGFEPDLYMRNR 170
           A+ +F  L   G       ++ ALISA   + ++      ++   +L +G    L + N 
Sbjct: 146 AVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNA 205

Query: 171 VLLMHVRCGM---MIDARRLFDEMPERNL------------------------------- 196
           ++ ++++C       DAR++ DEMP+++                                
Sbjct: 206 LIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFD 265

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256
           V  N +I+G + SG   +AF LF  +  E       TF +++ A A       GK +H  
Sbjct: 266 VVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQ 325

Query: 257 ALKMGFG----DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA---- 308
            +++         + V+ AL+ +YSK G I  A+ +FD M+ K  V WNTI++GY     
Sbjct: 326 IIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGC 385

Query: 309 --------------------------LHG-YSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
                                     +HG  SE+AL L+ +MR   VK   +T++  I  
Sbjct: 386 LDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAA 445

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C  L +L+H +Q HA LV+ GF     A +AL+  Y+K G + DAR VF  M   + +SW
Sbjct: 446 CGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSW 505

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           NA+I+  G HG G EA+ELF+QM+  G+ P+ ++FL +L+AC+ +GL + G+  F+SM R
Sbjct: 506 NAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKR 565

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           D  I P   HYA +I+LLGR G + EA  LI+  PF+ T ++W A+L+ CR NG++E G 
Sbjct: 566 DFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGA 625

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
           +AA++L+ M P+    Y++L N Y+++G+  +AA V + +R +G++  P CSWIEV  + 
Sbjct: 626 YAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKI 685

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLA 640
           HVFL GD  H + +E+Y+ ++ +   + K GYVP+ K +L D++  E+  +L  HSEKLA
Sbjct: 686 HVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLA 745

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           V FGL+       + ++++ RIC DCH A+  ++   GREIVVRD  RFHHFKDG CSCG
Sbjct: 746 VGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCG 805

Query: 701 DYW 703
           +YW
Sbjct: 806 NYW 808



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 163/372 (43%), Gaps = 66/372 (17%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYM--LSTGFEPD--LYM 167
           +A ELF  +  E    +   T+ +++SAC         K V   +  L   F P+  L +
Sbjct: 283 DAFELFRRMVSEK-VPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPV 341

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG----------------- 210
            N ++ ++ + G ++ A+R+FD M  +++VS N I++G IDSG                 
Sbjct: 342 NNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKND 401

Query: 211 --------DYL------EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256
                    Y+      +A  LF  +  E       T+A  I A   L  +  G+QLH+ 
Sbjct: 402 LSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAH 461

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
            ++ GF  +     AL+ MY+KCG++ DA+ VF  M    +V WN +I+    HG+  EA
Sbjct: 462 LVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREA 521

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF------------- 363
           L+L+ +M   G+  D  +F  I+  C            HAGLV  GF             
Sbjct: 522 LELFDQMVAEGIDPDRISFLTILTACN-----------HAGLVDEGFHYFESMKRDFGIS 570

Query: 364 -GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WNALIAGYGNHGRGEEAVELF 421
            G D  A   L+D   + GRI +AR +   M  +   S W A+++G   +G  E      
Sbjct: 571 PGEDHYAR--LIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAA 628

Query: 422 EQMLLNGMRPNH 433
           +Q+    M P H
Sbjct: 629 DQLFR--MIPQH 638


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/652 (34%), Positives = 364/652 (55%), Gaps = 38/652 (5%)

Query: 89  QMKKPSAGICSQ-IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
            + +P    CS  I  L  +    EA++++  L+ E G       + A   AC       
Sbjct: 37  NIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQ-ERGIKPDMPVFLAAAKACAVSGDAL 95

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
            VK V       G   D+++ N ++  + +C  +  ARR+FD++  R++VS   + +  +
Sbjct: 96  RVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYV 155

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
             G   +   +F ++          T ++++ A A L+ +  GK++H  A++ G   N+F
Sbjct: 156 KCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLF 215

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN-------------------------- 301
           V  AL+ +Y+KC S+ +A+ VFD M  +  V WN                          
Sbjct: 216 VCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDG 275

Query: 302 ---------TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
                     +I G   +G SEEA++++ +M+  G K +  T S I+  C+   +L   K
Sbjct: 276 VRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGK 335

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           + H  + RH    D+ + +AL+  Y+K G +  +R+VFD M  K+V++WN +I     HG
Sbjct: 336 EIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHG 395

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
            G+EA+ LF++MLL+ ++PN VTF  VLS CS S L E G +IF SM RDH ++P A HY
Sbjct: 396 NGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHY 455

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532
           +C++++  R G L+EA+  I+G P + T + W ALL ACRV  N+EL K +A+KL+ +EP
Sbjct: 456 SCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEP 515

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHV 592
               NYV L NI  ++    EA++V   ++ +G+   P CSW++V  + H F+ GD+S++
Sbjct: 516 NNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNI 575

Query: 593 QTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDW 651
           ++ +IY  +D ++ ++   GY P+   +L D+D++E+   L  HSEKLAVAFG++N +  
Sbjct: 576 ESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQ 635

Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + +++ ++ RIC DCHNAIK ++ V G  IVVRD+ RFHHFK+G CSC D W
Sbjct: 636 STIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 687



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/438 (27%), Positives = 199/438 (45%), Gaps = 46/438 (10%)

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
           R++ + +  G    AR+LFD +P+ +  +C+ +I+ +   G   EA  ++  L E     
Sbjct: 17  RLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKP 76

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
               F    +A A        K++H  A + G   +VFV  ALI  Y KC  +E A+ VF
Sbjct: 77  DMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 136

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           D++  +  V W ++ + Y   G+  + +D++ EM  SGVK +  T S I+  C  L  L+
Sbjct: 137 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLK 196

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             K+ H   VRHG  +++   SALV  Y+K   + +AR VFD M  ++V+SWN ++  Y 
Sbjct: 197 SGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYF 256

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            +   E+   LF +M  +G+R +  T+ AV+  C  +G SE   E+F+ M +        
Sbjct: 257 KNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQK-------- 308

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK-FAAEKLY 528
                    +G                FK  +   +++L AC  + NL +GK        
Sbjct: 309 ---------MG----------------FKPNEITISSILPACSFSENLRMGKEIHCYVFR 343

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
             +   L++   LL +Y   G L  +  V   +RRK +      +W       +  +  +
Sbjct: 344 HWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRRKDV-----VAW-------NTMIIAN 391

Query: 589 QSHVQTKEIYRKVDRMML 606
             H   KE     D+M+L
Sbjct: 392 AMHGNGKEALFLFDKMLL 409


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/596 (37%), Positives = 348/596 (58%), Gaps = 6/596 (1%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EALE F  +   G     S+T  + + A      +   + V  Y +  G     ++   +
Sbjct: 194 EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGL 253

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + ++ +CG M  A+ LFD M   +LV+ N +I+G   +G    +  LF +L        S
Sbjct: 254 MSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNS 313

Query: 232 RTFATMIRASA--GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
            T   +I   +  G EL++  + LH+  +K     +  VS AL  +Y +   +E A+ +F
Sbjct: 314 STLVAVIPVYSPFGHELLA--RCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIF 371

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           D M EKT   WN +I+GYA +G +E A+ L+  M++  V+ +  T S  +  C  L +L 
Sbjct: 372 DAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALS 431

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             K  H  + +    L++   +AL+D Y+K G I +AR +FD+M  KNV+SWNA+I+GYG
Sbjct: 432 LGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYG 491

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            HG+G EA++L++ ML   + P   TFL+V+ ACS  GL + G ++F+ M+ +++I P  
Sbjct: 492 LHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGI 551

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTT-KNMWAALLTACRVNGNLELGKFAAEKLY 528
            H  CM++LLGR G L+EA  LI   P       +W ALL AC V+ N +L K A++KL+
Sbjct: 552 EHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLF 611

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
            ++ E    YV+L N+Y S     EAA V +  + + L   P C+ IE+  +PHVF++GD
Sbjct: 612 ELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGD 671

Query: 589 QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLIN 647
             H Q++ IY  ++R+  ++ + GY P  +  L DV+E+E + ++  HSEKLA+AFGL++
Sbjct: 672 HLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLS 731

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T   T ++I+++ R+C DCHNA K I+ VT R IVVRDASRFHHF+DG+CSCGDYW
Sbjct: 732 TEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 194/360 (53%), Gaps = 5/360 (1%)

Query: 157 LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF 216
           ++ G+  D ++ + +  ++ +     DAR++FD +P  + +  N ++AG+  S + LEAF
Sbjct: 141 VAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPGS-EALEAF 199

Query: 217 LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276
           +  +D      D  S T A+ +RA+A    +++G+ +H   +K G  ++  V   L+ +Y
Sbjct: 200 VRMVDAGRVRPD--STTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLY 257

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
           SKCG ++ AQ +FD M     V +N +I+GY+++G  E +++L+ E+  SG + +  T  
Sbjct: 258 SKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLV 317

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            +I + +       A+  HA +V+     D + ++AL   Y +   +E AR +FD ML K
Sbjct: 318 AVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEK 377

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
            + SWNA+I+GY  +G  E AV LF+ M    ++PN +T  + LSAC+  G    G  + 
Sbjct: 378 TMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVH 437

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
           + +S++ K++        +I++  + G + EA ++      K   + W A+++   ++G 
Sbjct: 438 RIISKE-KLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVS-WNAMISGYGLHGQ 495



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 175/394 (44%), Gaps = 53/394 (13%)

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           +  + LH  ++  G+  + FV+ AL  +Y K    +DA+ VFD +    T+ WNT++AG 
Sbjct: 131 AAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGL 190

Query: 308 ALHGYSEEALDLYYEMRDSG-VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
                  EAL+ +  M D+G V+ D  T +  +R     + +   +  H   V+ G    
Sbjct: 191 P----GSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEH 246

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
               + L+  YSK G ++ A+ +FD+M   +++++NALI+GY  +G  E +VELF+++  
Sbjct: 247 EHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTA 306

Query: 427 NGMRPNHVTFLAVLSACSRSG--LSERGWEIFQSMSR----------------------- 461
           +G RPN  T +AV+   S  G  L  R    F   +R                       
Sbjct: 307 SGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMES 366

Query: 462 -----DHKIKPRAMHYACMIELLGREGLLDEA---FALIRGAPFKTTKNMWAALLTACRV 513
                D  ++     +  MI    + GL + A   F L++    +      ++ L+AC  
Sbjct: 367 ARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAH 426

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVV--LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
            G L LGK+   ++   E  +L+ YV+  L+++Y   G + EA  +   +  K +     
Sbjct: 427 LGALSLGKW-VHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNV----- 480

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
            SW       +  +SG   H Q  E  +    M+
Sbjct: 481 VSW-------NAMISGYGLHGQGAEALKLYKDML 507


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/607 (35%), Positives = 360/607 (59%), Gaps = 37/607 (6%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N  + EA+  F  L           T+  ++ AC    ++ + +++  +   
Sbjct: 87  SMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFK 143

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF+ ++++   ++ M+ R G    AR LFD+MP R++ S N +I+G+I +G+  +A   
Sbjct: 144 LGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQA--- 200

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
            LD+ +E                  LE            +KM F   V +    +DMY+K
Sbjct: 201 -LDVLDEMR----------------LE-----------GIKMNFVTVVSILPVFVDMYAK 232

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSM 337
            G ++ A  VF+ +  K  + WNT+I GYA +G + EA+++Y  M +   +  +  T+  
Sbjct: 233 LGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVS 292

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           I+     + +L+   + H  +++    LD+   + L+D Y K GR+ DA  +F ++  ++
Sbjct: 293 ILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQES 352

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
            ++WNA+I+ +G HG  E+ ++LF +ML  G++P+HVTF+++LSACS SG  E G   F+
Sbjct: 353 SVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFR 412

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
            M +++ IKP   HY CM++LLGR G L+ A+  I+  P +   ++W ALL ACR++GN+
Sbjct: 413 LM-QEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNI 471

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
           ELGKFA+++L+ ++ + +  YV+L NIY + GK +   +V    R +GL+  P  S IEV
Sbjct: 472 ELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEV 531

Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHS 636
            ++  VF +G+QSH + KEIY ++  +  ++   GY+P+   +L DV+E E + +L+ HS
Sbjct: 532 NRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHS 591

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           E+LA+AFG+I+T   +P++I ++ R+C DCHNA K I+ +T REIVVRD++RFHHFKDG+
Sbjct: 592 ERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGI 651

Query: 697 CSCGDYW 703
           CSCGDYW
Sbjct: 652 CSCGDYW 658



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/421 (26%), Positives = 212/421 (50%), Gaps = 51/421 (12%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           ++  G    +++  R++ ++   G +  +R  FD++P++++ + N +I+  + +G + EA
Sbjct: 42  LVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEA 101

Query: 216 ------FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
                  LL  ++  +F      TF  +++A   L     G+++H  A K+GF  NVFV+
Sbjct: 102 IGCFYQLLLVSEIRPDF-----YTFPPVLKACGTL---VDGRKIHCWAFKLGFQWNVFVA 153

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            +LI MYS+ G    A+ +FD+M  +    WN +I+G   +G + +ALD+  EMR  G+K
Sbjct: 154 ASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIK 213

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
           M+  T   I+ +                                VD Y+K G ++ A  V
Sbjct: 214 MNFVTVVSILPV-------------------------------FVDMYAKLGLLDSAHKV 242

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM-LLNGMRPNHVTFLAVLSACSRSGL 448
           F+ +  K+VISWN LI GY  +G   EA+E+++ M     + PN  T++++L A +  G 
Sbjct: 243 FEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGA 302

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
            ++G +I   + + + +        C+I++ G+ G L +A +L    P + +   W A++
Sbjct: 303 LQQGMKIHGRVIKTN-LHLDVFVATCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAII 360

Query: 509 TACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           +   ++G+ E  L  F      G++P+ ++ +V LL+  + SG ++E     R ++  G+
Sbjct: 361 SCHGIHGHAEKTLKLFGEMLDEGVKPDHVT-FVSLLSACSHSGFVEEGKWCFRLMQEYGI 419

Query: 567 R 567
           +
Sbjct: 420 K 420



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 104/228 (45%), Gaps = 27/228 (11%)

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
           AK  HA LV  G    I  ++ LV+ Y+  G +  +R  FD++  K+V +WN++I+ Y +
Sbjct: 35  AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 94

Query: 411 HGRGEEAVELFEQMLL-NGMRPNHVTFLAVLSACSR--SGLSERGWEIFQSMSRDHKIKP 467
           +G   EA+  F Q+LL + +RP+  TF  VL AC     G     W        +  +  
Sbjct: 95  NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVA- 153

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
                A +I +  R G    A +L    PF+   + W A+++    NGN      AA+ L
Sbjct: 154 -----ASLIHMYSRFGFTGIARSLFDDMPFRDMGS-WNAMISGLIQNGN------AAQAL 201

Query: 528 YGMEPEKLS----NYV-------VLLNIYNSSGKLKEAAEVIRTLRRK 564
             ++  +L     N+V       V +++Y   G L  A +V   +  K
Sbjct: 202 DVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVK 249


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 196/524 (37%), Positives = 327/524 (62%), Gaps = 4/524 (0%)

Query: 184 ARRLFDEMPER-NLVSCNMIIAGMIDSGDYLEAFLLFLDL-WEEFSDCGSRTFATMIRAS 241
           A ++F ++ +  N+   N +I G  + G+ + AF L+ ++      +  + T+  +I+A 
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
             +  + +G+ +HS  ++ GFG  ++V  +L+ +Y+ CG +  A  VFD+M EK  V WN
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           ++I G+A +G  EEAL LY EM   G+K D FT   ++  C ++ +L   K+ H  +++ 
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV 251

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           G   ++ +++ L+D Y++ GR+E+A+ +FD+M+ KN +SW +LI G   +G G+EA+ELF
Sbjct: 252 GLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELF 311

Query: 422 EQM-LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
           + M    G+ P  +TF+ +L ACS  G+ + G+E F+ M  ++KI+PR  H+ CM++LL 
Sbjct: 312 KYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLA 371

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540
           R G + +A+  I+  P +    +W  LL AC V+G+ +L +FA  ++  +EP    +YV+
Sbjct: 372 RAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVL 431

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRK 600
           L N+Y S  +  +  ++ + + R G++ +P  S +EV  + H FL GD+SH Q+  IY K
Sbjct: 432 LSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAK 491

Query: 601 VDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQS 659
           +  M   +   GYVP+   +  DV+E+E +  + YHSEK+A+AF LI+T + +P+ +V++
Sbjct: 492 LKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKN 551

Query: 660 HRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            R+C DCH AIKL++ V  REIVVRD SRFHHFK+G CSC DYW
Sbjct: 552 LRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/405 (26%), Positives = 198/405 (48%), Gaps = 43/405 (10%)

Query: 84  SLPDTQMKKPSAGICSQIEKLV-------LNKRYRE------ALELFEILEFEGGFDVGS 130
           SLP       +  + S+IEK +       L + Y E      A  L+  +   G  +  +
Sbjct: 62  SLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDT 121

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
            TY  LI A   +  +R  + + S ++ +GF   +Y++N +L ++  CG +  A ++FD+
Sbjct: 122 HTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDK 181

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           MPE++LV+ N +I G  ++G   EA  L+ ++  +       T  +++ A A +  +++G
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 241

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           K++H   +K+G   N+  S  L+D+Y++CG +E+A+ +FDEM +K +V W ++I G A++
Sbjct: 242 KRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVN 301

Query: 311 GYSEEALDLYYEMRDS-GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL---- 365
           G+ +EA++L+  M  + G+     TF  I+  C+           H G+V+ GF      
Sbjct: 302 GFGKEAIELFKYMESTEGLLPCEITFVGILYACS-----------HCGMVKEGFEYFRRM 350

Query: 366 --------DIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEE 416
                    I     +VD  ++ G+++ A      M +  NV+ W  L+     HG  + 
Sbjct: 351 REEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDL 410

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           A   F ++ +  + PNH     +LS       SE+ W   Q + +
Sbjct: 411 AE--FARIQILQLEPNHSGDYVLLSNMYA---SEQRWSDVQKIRK 450


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/593 (36%), Positives = 351/593 (59%), Gaps = 4/593 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
            AL +F  L      D  S+T+   +SAC  L  +R  + V       G++ D+++ + +
Sbjct: 92  SALRVFRALPPAARPD--STTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSL 149

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L ++ R G M DA ++F  MP R+ V+ + ++AG + +G  L+A  ++  + E+      
Sbjct: 150 LHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDE 209

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
                +I+A      + +G  +H   L+ G   +V  + +L+DMY+K G ++ A  VF  
Sbjct: 210 VVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGL 269

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M  +  V W+ +I+G+A +G S+EAL L+  M+ SG++ D       +  C+ +  L+  
Sbjct: 270 MVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLG 329

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           +  H  +VR  F  + +  +A +D YSK G +  A+ +F+ +  +++I WNA+IA  G H
Sbjct: 330 RSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAH 388

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           GRG++A+ LF++M   GMRP+H TF ++LSA S SGL E G   F  M    KI P   H
Sbjct: 389 GRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKH 448

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           Y C+++LL R GL++EA  L+     + T  +W ALL+ C  N  LELG+  A+ +  ++
Sbjct: 449 YVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQ 508

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P+ +    ++ N+Y ++ K  +  +V + ++  G + +P CS IE++   HVF+  DQSH
Sbjct: 509 PDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSH 568

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSD 650
            Q +EI  KV ++ LE+ K GY+P  + +  D++E+ +++ LSYHSE+LA+AFGL+NT  
Sbjct: 569 PQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGP 628

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            T L I+++ R+C DCH+AIK I+ +  REIVVRDA RFHHFKDG+CSC DYW
Sbjct: 629 GTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score = 83.2 bits (204), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 116/242 (47%), Gaps = 5/242 (2%)

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           ++  G    AL ++  +     + D  TF++ +  C RL  L   +         G+  D
Sbjct: 84  HSRRGSPASALRVFRAL-PPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +   S+L+  Y++WG + DA  VF +M  ++ ++W+ ++AG+ + G+  +A++++ +M  
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
           +G++ + V  + V+ AC+ +     G  +   + R H ++   +    ++++  + GLLD
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLD 261

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNI 544
            A  +  G         W+A+++    NG  +  L  F   +  G++P+  +    LL  
Sbjct: 262 VACRVF-GLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 545 YN 546
            N
Sbjct: 321 SN 322


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/603 (36%), Positives = 353/603 (58%), Gaps = 8/603 (1%)

Query: 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP 163
           L+LN+   EAL+LF          +  STY  +I  C  L+ +   +++ S +L  GF  
Sbjct: 277 LLLNEHQLEALQLFHDSRASMA-KLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHS 335

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMP-ERNLVSCNMIIAGMIDSGDYLEAFLLFLDL 222
           D  +   ++  + +CG + DA  +F  MP  +N+VS   +I G I + D   A  LF  +
Sbjct: 336 DGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRM 395

Query: 223 WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
            E+       T++T++ AS  + L     Q+H+  +K  +     V  AL+  YSK G+ 
Sbjct: 396 REDNVKPNEFTYSTVLTASIPILL----PQIHAQIIKTNYQHAPSVGTALLASYSKLGNT 451

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           E+A  +F  +  K  V W+ +++ Y+  G  + A +++ +M   G+K + FT S  I  C
Sbjct: 452 EEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDAC 511

Query: 343 -TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
            +  A ++  +Q HA  +++ +   I   SALV  Y++ G I+ AR VF++   ++++SW
Sbjct: 512 ASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSW 571

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           N++I+GY  HG  +EA++ F QM   G+  +  TFLAV+  C+ +GL + G + F SM  
Sbjct: 572 NSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQQYFDSMVM 631

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           DH I P   HY+CM++L  R G LDE   LI G PF     +W  LL ACRV+ N+ELGK
Sbjct: 632 DHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRVHKNVELGK 691

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
            AA+KL  +EP+  + YV+L NIY ++G+ KE  EV + +  K ++    CSWI++K + 
Sbjct: 692 LAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCSWIQIKNKV 751

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLA 640
           H F++ D+SH  +++IY K+  M   + + GY P    +L D+ +EQ++ +L  HSE+LA
Sbjct: 752 HSFIACDKSHPLSEQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAEEQKETMLVMHSERLA 811

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AFGLI T   TPLQIV++ R+C DCH  +K+++++  REI++RD SRFHHF  G CSCG
Sbjct: 812 LAFGLIATPPRTPLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRDCSRFHHFNAGACSCG 871

Query: 701 DYW 703
           D+W
Sbjct: 872 DFW 874



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/366 (29%), Positives = 197/366 (53%), Gaps = 9/366 (2%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+++CG + D R +F+ MP+RN+V+   ++ G +      +   LF  +  E       T
Sbjct: 144 MYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFT 203

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
           F +++ A A    + +G+++H+ ++K G    VFV  +LI+MYSKCG +E+A+ VF +M 
Sbjct: 204 FTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQME 263

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
            +  V WNT++AG  L+ +  EAL L+++ R S  K+   T+S +I++C  L  L  A+Q
Sbjct: 264 TRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQ 323

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-CKNVISWNALIAGYGNHG 412
            H+ +++HGF  D    +A++D YSK G ++DA ++F  M   +NV+SW A+I G   + 
Sbjct: 324 LHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNA 383

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
               A  LF +M  + ++PN  T+  VL+A     L +   +I ++   +++  P     
Sbjct: 384 DIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIKT---NYQHAPSV--G 438

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGM 530
             ++    + G  +EA ++ +    K     W+A+L+     G+ +     F    + GM
Sbjct: 439 TALLASYSKLGNTEEALSIFKMIDHKDVV-AWSAMLSCYSQAGDCDGATNVFIKMSMQGM 497

Query: 531 EPEKLS 536
           +P + +
Sbjct: 498 KPNEFT 503



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 188/358 (52%), Gaps = 5/358 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+ +++SA     ++   +RV +  +  G    +++ N ++ M+ +CG++ +A+ +F +M
Sbjct: 203 TFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQM 262

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
             R++VS N ++AG++ +   LEA  LF D     +     T++T+I+  A L+ +++ +
Sbjct: 263 ETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALAR 322

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM-SEKTTVGWNTIIAGYALH 310
           QLHSC LK GF  +  V  A++D YSKCG ++DA  +F  M   +  V W  +I G   +
Sbjct: 323 QLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQN 382

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
                A  L+  MR+  VK + FT+S ++     +       Q HA +++  +       
Sbjct: 383 ADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPIL----LPQIHAQIIKTNYQHAPSVG 438

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           +AL+  YSK G  E+A  +F  +  K+V++W+A+++ Y   G  + A  +F +M + GM+
Sbjct: 439 TALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMK 498

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           PN  T  + + AC+           F ++S  ++ +      + ++ +  R+G +D A
Sbjct: 499 PNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSA 556



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 172/367 (46%), Gaps = 12/367 (3%)

Query: 184 ARRLFDEMPERNLV---SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA 240
           AR+  D MP R+     S N +   ++D G   +     LD + +   CG    A + R 
Sbjct: 48  ARQALDGMPSRDAAAGSSSNPV--AIVDYGRRGKGRGEALDHFVDVHRCGRVQGAAVSRV 105

Query: 241 SAGLELIS---VGKQLHSCALKMGFG-DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
                LI     G+QLH   +K GF    V V  AL+DMY KCG +ED + VF+ M ++ 
Sbjct: 106 LKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRN 165

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
            V W +++ GY       + + L++ MR  GV  + FTF+ ++       +++  ++ HA
Sbjct: 166 VVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHA 225

Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
             V+ G    +   ++L++ YSK G +E+A+ VF +M  ++++SWN L+AG   +    E
Sbjct: 226 QSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLE 285

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
           A++LF     +  + +  T+  V+  C+         ++   + + H           ++
Sbjct: 286 ALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLK-HGFHSDGNVMTAIM 344

Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK--FAAEKLYGMEPEK 534
           +   + G LD+AF +    P       W A++  C  N ++ L    F+  +   ++P +
Sbjct: 345 DAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNE 404

Query: 535 LSNYVVL 541
            +   VL
Sbjct: 405 FTYSTVL 411


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/631 (35%), Positives = 355/631 (56%), Gaps = 38/631 (6%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           REA+ L+  +  +G     + T+  L+++C  L S+     V S+++  GFE DL++RN 
Sbjct: 92  REAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNA 151

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ ++   G +  AR LFDE   R+LVS N +I G  +      A  LF ++        
Sbjct: 152 LIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPD 211

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALK--MGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
             TF  +    + L   +VGKQ+H+   K       N+ +  A++DMY+KCG I  A+ V
Sbjct: 212 EFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERV 271

Query: 289 --------------------------------FDEMSEKTTVGWNTIIAGYALHGYSEEA 316
                                           F+ M E+  + W  +I+GY+  G   EA
Sbjct: 272 FSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEA 331

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG-FGLDIVANSALVD 375
           L+L+ EM   G+K D  T   ++  C RL + +  K+ +   + +G F  + +  +A++D
Sbjct: 332 LELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMD 391

Query: 376 FYSKWGRIEDARHVFDKM--LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
            Y+K G I+ A  +F ++    K    +N++IAG   HG GE A+ +F +++  G++P+ 
Sbjct: 392 MYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDE 451

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
           VTF+ VL AC  SGL E G ++F+SM   + IKP+  HY CM++LLGR G L+EA+ L++
Sbjct: 452 VTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQ 511

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
             PF+    +W ALL+ACR +GN+++G+ A +KL  ME +  + YV+L NI   + + +E
Sbjct: 512 KMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEE 571

Query: 554 AAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGY 613
           A +V + +   G+R  P  S+IE+    H F++ D+SH Q KEI   +  M + +   GY
Sbjct: 572 ARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGY 631

Query: 614 VPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKL 672
           VP    ++ D+DE+E+  V+SYHSEKLA+AFGL+  S    ++IV++ RIC DCH A KL
Sbjct: 632 VPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKL 691

Query: 673 IAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++ + GREI VRD  RFHHF++G CSC D+W
Sbjct: 692 VSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 166/324 (51%), Gaps = 10/324 (3%)

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGS---IEDAQGVFDEMSEKTTVGWNTIIAG 306
           G Q+H+  +  G    +F    LI  +S  GS   ++ ++ +F ++       WNT+I G
Sbjct: 25  GLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRG 84

Query: 307 YALHGYSEEALDLYYEMRDSGV-KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
           Y+      EA+ LY  M   G+   ++FTF  ++  C RL+SLE   + H+ +++HGF  
Sbjct: 85  YSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFES 144

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           D+   +AL+  YS +G +  AR +FD+ L ++++S+N +I GY    + E A+ LF +M 
Sbjct: 145 DLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQ 204

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD-HKIKPRAMHYACMIELLGREGL 484
            +G+ P+  TF+A+ S CS       G +I   + ++   I    +  + ++++  + GL
Sbjct: 205 NSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGL 264

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG-MEPEKLSNYVVLLN 543
           ++ A  +        +   W++++      G + +    A KL+  M    + ++  +++
Sbjct: 265 INIAERVFSTMGTSKSAAAWSSMVCGYARCGEINV----ARKLFNHMHERDVISWTAMIS 320

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLR 567
            Y+ +G+  EA E+ + +   G++
Sbjct: 321 GYSQAGQCSEALELFKEMEALGIK 344


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/569 (38%), Positives = 343/569 (60%), Gaps = 9/569 (1%)

Query: 137 ISACIGLRSIREV-KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           +++C  + + RE+  RVF  +L      D ++ ++++  + + G   DA +LFD+MP ++
Sbjct: 49  VNSCPSISNCREIHARVFKSLLYR----DGFIGDQLVTCYNKLGYAEDALKLFDDMPHKD 104

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
           LVS N +I+G      ++     +   +E        T  +MI A +G   +  GK +H 
Sbjct: 105 LVSWNSLISGF-SRCLHMSLTAFYTMKFEMSVKPNEVTILSMISACSG--ALDAGKYIHG 161

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
             +K+G    V V+ +LI+MY K G +  A  +F+ + +  TV WN+IIA    +G + E
Sbjct: 162 FGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCARE 221

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
            +D + +MR  G++ D  T   +++ C  L   + A+  H  +   GFG  I   +AL+D
Sbjct: 222 GIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLD 281

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            Y+K GR+  +  VF ++   + ++W A++AGY  HG G EA++LFE M   G+ P+HVT
Sbjct: 282 TYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVT 341

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
           F  +LSACS SGL   G   F  MS  + I+PR  HY+CM++LLGR GLL++A+ +I+  
Sbjct: 342 FTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNM 401

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           P +    +W ALL ACRV+GN+ELGK  AE L  MEP    NY++L N+Y++S   K+AA
Sbjct: 402 PMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAA 461

Query: 556 EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
           +V   L+ +GL+  P  S IE   + H F  GD+SH +T++IY K++ ++ +I K GY  
Sbjct: 462 KVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSS 521

Query: 616 EEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
           + + +L DV+E+ ++ +++ HSEKLA+AFGL+ + +   L I ++ RIC DCH+  KLI+
Sbjct: 522 KTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLIS 581

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++  R I++RD  RFHHF DG CSC DYW
Sbjct: 582 LIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 117/286 (40%), Gaps = 12/286 (4%)

Query: 36  SLLSGCYFSLDKRKWKRSFQ-----RVECCLMEQGLKPRPKPNKIYTEELKESSLPDTQM 90
           S++S C  +LD  K+   F       +E  +    +    K   + +      ++PD   
Sbjct: 144 SMISACSGALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNT 203

Query: 91  KKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVK 150
              ++ I +Q    V N   RE ++ F  +    G +    T  AL+ AC+ L   +  +
Sbjct: 204 VSWNSIIAAQ----VTNGCAREGIDYFNKMR-RLGIEQDEGTILALLQACLHLGVGKLAE 258

Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG 210
            +   M  TGF   + +   +L  + + G +  +  +F E+   + V+   ++AG    G
Sbjct: 259 SIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHG 318

Query: 211 DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM-GFGDNVFVS 269
              EA  LF  +  +  +    TF  ++ A +   L++ GK   +   ++ G    V   
Sbjct: 319 LGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHY 378

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYSE 314
             ++D+  +CG + DA  V   M  +   G W  ++    +HG  E
Sbjct: 379 SCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIE 424


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/553 (38%), Positives = 324/553 (58%), Gaps = 11/553 (1%)

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
           S GF+ +L++ + +  M+ +CG++ +A R+FD+MP+++ V+   +I G   +G    A L
Sbjct: 299 SVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVL 358

Query: 218 LFLDLWEE-FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276
            F D+  E         F +++ AS GL+   + K +H C  K GF   V V  ALIDMY
Sbjct: 359 SFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMY 418

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY-----SEEALDLYYEMRDSGVKMD 331
           +K   +E A  V     +    GWN +     + GY      EEAL +Y E+R  GV+ +
Sbjct: 419 AKSMDVESASRVL----KIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPN 474

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
            FTFS +I+ C   A LE   Q HA +++     D    S LVD Y K G I  +  +F+
Sbjct: 475 EFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFN 534

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
           ++  +  I+WNA+I  +  HG G EA++ F++M+ +G+RPNH+ F+++L+ACS +GL + 
Sbjct: 535 EIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDE 594

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
           G + F SM   H I+P+  HY+C+I+  GR G LDEA+  I   P K     W +LL AC
Sbjct: 595 GLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGAC 654

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           R+ G+ ELG+ AA+ L  +EP     +V L  IY S G+ ++   V + +R   ++ LP 
Sbjct: 655 RMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPG 714

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQR 630
            SW++  K+ HVF S D SH Q K+IY K++ +   I + GY+P+   L  ++++  ++R
Sbjct: 715 FSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKER 774

Query: 631 VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFH 690
           +L YHSE++AVAF LI+     P+ + ++ RIC DCH A K I  V  R+I+VRD SRFH
Sbjct: 775 ILRYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFH 834

Query: 691 HFKDGMCSCGDYW 703
           HF +G CSCGDYW
Sbjct: 835 HFVNGRCSCGDYW 847



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 171/367 (46%), Gaps = 34/367 (9%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   +K +    + I+    N     A+  F  ++ EG        + +++SA  GL+  
Sbjct: 330 DQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDG 389

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER-NLVSCNMIIAG 205
              K +   +   GFE ++ +RN ++ M+ +   +  A R+    P   N+VS   +I G
Sbjct: 390 WLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDG 449

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
            I++    EA +++++L  +  +    TF++MI+  A   L+  G QLH+  +K     +
Sbjct: 450 YIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRD 509

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
            FV   L+DMY KCG I  +  +F+E+  +T + WN +I  +A HG+  EA+  +  M  
Sbjct: 510 SFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIY 569

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
           SG++ +H  F  ++  C+           HAGLV  G          L  FYS    +++
Sbjct: 570 SGIRPNHIAFVSLLTACS-----------HAGLVDEG----------LKYFYS----MKE 604

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           A  +  K        ++ +I  YG  GR +EA +   +M    ++PN   + ++L AC  
Sbjct: 605 AHGIEPKEE-----HYSCIIDTYGRAGRLDEAYKFISEM---PIKPNAYGWCSLLGACRM 656

Query: 446 SGLSERG 452
            G  E G
Sbjct: 657 RGSKELG 663



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 80/399 (20%), Positives = 144/399 (36%), Gaps = 86/399 (21%)

Query: 222 LWEEFSDCGSRT--FATMIRASAGLELISVGKQLHS-CALKMGFGDNVFVSCALIDMYSK 278
           LW   +   + T   A+++++      +  G+ LH+   L      + F++  LI MYS 
Sbjct: 9   LWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSH 68

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF--- 335
           C  +  A  +F  M  +  V W T+++G + +    +AL  +  MR +GV      +   
Sbjct: 69  CADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETK 128

Query: 336 ---------------------------------------------SMIIRICTRLASLEH 350
                                                        + +++ C R   L  
Sbjct: 129 FHNTLGPKHTLAASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRR 188

Query: 351 AKQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
            +  HA LV  G       +AN  L+  YS    +  A  +F  M  +N +SW  L++G 
Sbjct: 189 GRLLHARLVLSGAAAASTFLANH-LITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGL 247

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS------------ACSRSGLSERGWEIF 456
             +    +A+  F  M   G+ P      +               +C+ S       E+F
Sbjct: 248 SQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCTASASVGFDTELF 307

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
            + +              + ++  + GLL EA  +    P K     W A++     NG+
Sbjct: 308 VASN--------------LADMYSKCGLLSEACRVFDQMPQKDAV-AWTAMIDGYAKNGS 352

Query: 517 LELGKFAAEKLYGMEPEKL--SNYVVLLNIYNSSGKLKE 553
           LE    A      M+ E L  ++  V  ++ ++SG LK+
Sbjct: 353 LEA---AVLSFRDMKREGLVGADQHVFCSVLSASGGLKD 388


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/629 (36%), Positives = 358/629 (56%), Gaps = 26/629 (4%)

Query: 99  SQIEKLVLNKRYREALE-LFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           + I  LV   R  EA+E L++++    G      T+ + + AC  L  +   + + + +L
Sbjct: 252 TMISLLVQGGRCAEAVEVLYDMVSL--GVRPDGVTFASALPACSRLEMLALGREMHAVVL 309

Query: 158 STG-FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE--RNLVSCNMIIAGMIDSGDYLE 214
                  + ++ + ++ M+     +  ARR+FD +PE  R L   N +I G   +G   E
Sbjct: 310 KDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEE 369

Query: 215 AFLLFLDLWEEFSDCGSRT-FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           A  LF  +  E     S T  + ++ A A  E  +  + +H   +K G   N FV  AL+
Sbjct: 370 ALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALM 429

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM--- 330
           DMY++ G ++ A+ +F  +  +  V WNT+I G  + G++ EA  L  EM+         
Sbjct: 430 DMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSS 489

Query: 331 -------------DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
                        ++ T   ++  C  LA+    K+ H   VRH    DI   SALVD Y
Sbjct: 490 STTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMY 549

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTF 436
           +K G +  +R VFD++  +NVI+WN LI  YG HG G+EAV LF++M   G   PN VTF
Sbjct: 550 AKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTF 609

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-A 495
           +A L+ACS SGL +RG E+F  M RDH +KP    +AC++++LGR G LDEA+++I    
Sbjct: 610 IAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSME 669

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           P +   + W++LL ACR++ N+ELG+ AAE+L+ +EP + S+YV+L NIY+++G   ++ 
Sbjct: 670 PGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSV 729

Query: 556 EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
            V   +RR+G+   P CSWIE+    H F++G+ SH  + E++  +D +   + + GY P
Sbjct: 730 AVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRREGYAP 789

Query: 616 EEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
           +   +L DVDE E+  +L YHSEKLA+AFGL+       +++ ++ R+C DCH A K ++
Sbjct: 790 DTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEAAKFMS 849

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            + GR+IV+RD  RFHHF+DG CSCGDYW
Sbjct: 850 KMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 130/275 (47%), Gaps = 18/275 (6%)

Query: 252 QLHSCALKMGF--GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE--KTTVGWNTIIAGY 307
            LH+ AL+       +  V  AL+  Y++CG ++ A  +F   +   +  V +N++I+  
Sbjct: 84  SLHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISAL 143

Query: 308 ALHGYSEEALDLYYEMRDSGV-KMDHFTFSMIIRICTRLASLEH---AKQAHAGLVRHGF 363
            L    E ALD   +M   G   +  FT   ++  C+ L   +     ++AHA  ++ GF
Sbjct: 144 CLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGF 203

Query: 364 ---GLDIVANSALVDFYSKWGRIEDARHVFDKMLCK------NVISWNALIAGYGNHGRG 414
              G +    +AL+  Y++ G ++DA+ +F            +V++WN +I+     GR 
Sbjct: 204 LDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRC 263

Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474
            EAVE+   M+  G+RP+ VTF + L ACSR  +   G E+   + +D  +   +   + 
Sbjct: 264 AEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASA 323

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTK-NMWAALL 508
           ++++      +  A  +    P  + +  MW A++
Sbjct: 324 LVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMI 358


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/592 (36%), Positives = 351/592 (59%), Gaps = 4/592 (0%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           AL +F  L      D  S+T+   +SAC  L  +R  + V       G++ D+++ + +L
Sbjct: 93  ALRVFRALPPAARPD--STTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLL 150

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            ++ R G M DA ++F  MP R+ V+ + ++AG + +G  L+A  ++  + E+       
Sbjct: 151 HLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEV 210

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
               +I+A      + +G  +H   L+ G   +V  + +L+DMY+K G ++ A  VF  M
Sbjct: 211 VMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLM 270

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
             +  V W+ +I+G+A +G S+EAL L+  M+ SG++ D       +  C+ +  L+  +
Sbjct: 271 VHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGR 330

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
             H  +VR  F  + +  +A +D YSK G +  A+ +F+ +  +++I WNA+IA  G HG
Sbjct: 331 SVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHG 389

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
           RG++A+ LF++M   GMRP+H TF ++LSA S SGL E G   F  M    KI P   HY
Sbjct: 390 RGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHY 449

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532
            C+++LL R GL++EA  L+     + T  +W ALL+ C  N  LELG+  A+ +  ++P
Sbjct: 450 VCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQP 509

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHV 592
           + +    ++ N+Y ++ K  +  +V + ++  G + +P CS IE++   HVF+  DQSH 
Sbjct: 510 DDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHP 569

Query: 593 QTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDW 651
           Q +EI  KV ++ LE+ K GY+P  + +  D++E+ +++ LSYHSE+LA+AFGL+NT   
Sbjct: 570 QREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPG 629

Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T L I+++ R+C DCH+AIK I+ +  REIVVRDA RFHHFKDG+CSC DYW
Sbjct: 630 TRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 53/242 (21%), Positives = 116/242 (47%), Gaps = 5/242 (2%)

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           ++  G    AL ++  +     + D  TF++ +  C RL  L   +         G+  D
Sbjct: 84  HSRRGSPASALRVFRAL-PPAARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDD 142

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +   S+L+  Y++WG + DA  VF +M  ++ ++W+ ++AG+ + G+  +A++++ +M  
Sbjct: 143 VFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE 202

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
           +G++ + V  + V+ AC+ +     G  +   + R H ++   +    ++++  + GLLD
Sbjct: 203 DGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLD 261

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNI 544
            A  +  G         W+A+++    NG  +  L  F   +  G++P+  +    LL  
Sbjct: 262 VACRVF-GLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 545 YN 546
            N
Sbjct: 321 SN 322


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/603 (35%), Positives = 346/603 (57%), Gaps = 35/603 (5%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMH----------------- 175
           +  L  AC   R++R ++++ ++  ++G   D +  N ++L +                 
Sbjct: 109 FSHLFRAC---RALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIP 165

Query: 176 --------------VRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
                         ++ G +  AR+LFDEMPERN+ + N ++AG+ + G   E+   FLD
Sbjct: 166 RRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLD 225

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           +  E          ++ R  AGL  +  G+Q+H+  ++ G   ++ V  +L  MY +CG 
Sbjct: 226 MRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGC 285

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           +++ + V   +   + V  NTIIAG   +G SE AL+ +  MR  GV  D  TF   I  
Sbjct: 286 LQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISS 345

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C+ LA+L   +Q H  +++ G    +   + LV  YS+ G + D+  VF      +    
Sbjct: 346 CSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLL 405

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           +A+I+ YG HG G++A+ELF+QM+  G  P+ VTFLA+L ACS SGL E G + F+ M++
Sbjct: 406 SAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTK 465

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
            + ++P   HY C+++LLGR G LDEA ALI   P      +W  LL+AC+   N ++ +
Sbjct: 466 TYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAE 525

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
             A+++  ++P   ++YV+L NI  +S +  + +EV + +R   +R  P  SW+E+K   
Sbjct: 526 RIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHI 585

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLA 640
           H F +GD+SH + KEI   ++ MM +I + GY P+   +L D++++E+ V LS+HSEKLA
Sbjct: 586 HQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLA 645

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AF  ++  +  P++++++ R+C DCH AIKL++ VTGREIVVRD SRFHHFKDG CSC 
Sbjct: 646 IAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCR 705

Query: 701 DYW 703
           DYW
Sbjct: 706 DYW 708


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/621 (37%), Positives = 364/621 (58%), Gaps = 12/621 (1%)

Query: 92  KPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDV--GSSTYDALISACIGLRSIREV 149
           K S    S I  L  N  + EA+E ++ +      D+  GS T  + +S+C  L+  +  
Sbjct: 378 KDSVSWNSMITGLDQNGCFIEAVERYKSMRRH---DILPGSFTLISSLSSCASLKWAKLG 434

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           +++    L  G + ++ + N ++ ++   G + + R++F  MPE + VS N II  +  S
Sbjct: 435 QQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARS 494

Query: 210 GDYL-EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
              L EA + FL+           TF++++ A + L    +GKQ+H  ALK    D    
Sbjct: 495 ERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATT 554

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
             ALI  Y KCG ++  + +F  M+E+   V WN++I+GY  +    +ALDL + M  +G
Sbjct: 555 ENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTG 614

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
            ++D F ++ ++     +A+LE   + HA  VR     D+V  SALVD YSK GR++ A 
Sbjct: 615 QRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYAL 674

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR-PNHVTFLAVLSACSRS 446
             F+ M  +N  SWN++I+GY  HG+GEEA++LFE M L+G   P+HVTF+ VLSACS +
Sbjct: 675 RFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHA 734

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           GL E G++ F+SMS  + + PR  H++CM ++LGR G LD+    I   P K    +W  
Sbjct: 735 GLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRT 794

Query: 507 LLTA-CRVNG-NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           +L A CR NG   ELGK AAE L+ +EPE   NYV+L N+Y + G+ ++  +  + ++  
Sbjct: 795 VLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDA 854

Query: 565 GLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV 624
            ++     SW+ +K   H+F++GD+SH     IY+K+  +  ++   GYVP+    L D+
Sbjct: 855 DVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDL 914

Query: 625 D-EQEQRVLSYHSEKLAVAFGL-INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           + E ++ +LSYHSEKLAVAF L    S   P++I+++ R+C DCH+A K I+ + GR+I+
Sbjct: 915 EQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQII 974

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           +RD++RFHHF+DG CSC D+W
Sbjct: 975 LRDSNRFHHFQDGACSCSDFW 995



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 148/296 (50%), Gaps = 9/296 (3%)

Query: 135 ALISACIGLRSIREVKRVF-SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193
           + + +C+G R      R F S +     + D+Y+ N ++  ++  G  + AR++FDEMP 
Sbjct: 8   SFVQSCVGHRG---AARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPL 64

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV--GK 251
           RN VS   I++G   +G++ EA +   D+ +E        F +++RA   +  + +  G+
Sbjct: 65  RNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGR 124

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKC-GSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           Q+H    K+ +  +  VS  LI MY KC GS+  A   F ++  K +V WN+II+ Y+  
Sbjct: 125 QIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQA 184

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA--SLEHAKQAHAGLVRHGFGLDIV 368
           G    A  ++  M+  G +   +TF  ++     L    +   +Q    + + G   D+ 
Sbjct: 185 GDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLF 244

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
             S LV  ++K G +  AR VF++M  +N ++ N L+ G      GEEA +LF  M
Sbjct: 245 VGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDM 300



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 100/385 (25%), Positives = 187/385 (48%), Gaps = 12/385 (3%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLR--SIREVKRVFSYMLSTGFEPDLYMR 168
           R A  +F  ++++G       T+ +L++    L    +R ++++   +  +G   DL++ 
Sbjct: 188 RSAFRIFSSMQYDGSRPT-EYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVG 246

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           + ++    + G +  AR++F++M  RN V+ N ++ G++      EA  LF+D+     D
Sbjct: 247 SGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDM-NSMID 305

Query: 229 CGSRTFATMIRASAGLEL-----ISVGKQLHSCALKMGFGD-NVFVSCALIDMYSKCGSI 282
               ++  ++ +     L     +  G+++H   +  G  D  V +   L++MY+KCGSI
Sbjct: 306 VSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSI 365

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
            DA+ VF  M++K +V WN++I G   +G   EA++ Y  MR   +    FT    +  C
Sbjct: 366 ADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSC 425

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
             L   +  +Q H   ++ G  L++  ++AL+  Y++ G + + R +F  M   + +SWN
Sbjct: 426 ASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWN 485

Query: 403 ALIAGYGNHGRG-EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           ++I       R   EAV  F      G + N +TF +VLSA S     E G +I   ++ 
Sbjct: 486 SIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQI-HGLAL 544

Query: 462 DHKIKPRAMHYACMIELLGREGLLD 486
            + I   A     +I   G+ G +D
Sbjct: 545 KNNIADEATTENALIACYGKCGEMD 569



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 97/196 (49%), Gaps = 4/196 (2%)

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
            HS   K     +V++   LI+ Y + G    A+ VFDEM  +  V W  I++GY+ +G 
Sbjct: 23  FHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGE 82

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE--HAKQAHAGLVRHGFGLDIVAN 370
            +EAL    +M   G+  + + F  ++R C  + S+     +Q H  + +  + +D V +
Sbjct: 83  HKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVS 142

Query: 371 SALVDFYSK-WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
           + L+  Y K  G +  A   F  +  KN +SWN++I+ Y   G    A  +F  M  +G 
Sbjct: 143 NVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGS 202

Query: 430 RPNHVTFLA-VLSACS 444
           RP   TF + V +ACS
Sbjct: 203 RPTEYTFGSLVTTACS 218



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 52/97 (53%)

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
           A+  H+ L ++    D+   + L++ Y + G    AR VFD+M  +N +SW  +++GY  
Sbjct: 20  ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSR 79

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
           +G  +EA+     M+  G+  N   F++VL AC   G
Sbjct: 80  NGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIG 116


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/535 (39%), Positives = 324/535 (60%), Gaps = 43/535 (8%)

Query: 174 MHVRC---GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDY-LEAFLLFLDLWEEFSDC 229
           M+ +C   G + D+R++F++MPE N++S   II   + SG+   EA  LF          
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELF---------- 50

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
                  MI AS             +C           V  +LI MY++ G +EDA+  F
Sbjct: 51  -----CKMISASV------------NC-----------VGNSLISMYARSGRMEDARKAF 82

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           D + EK  V +N I+ GYA +  SEEA  L+ E+ D+G+ +  FTF+ ++     + ++ 
Sbjct: 83  DILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMG 142

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             +Q H  L++ G+  +    +AL+  YS+ G IE A  VF++M  +NVISW ++I G+ 
Sbjct: 143 KGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFA 202

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            HG    A+E+F +ML  G +PN +T++AVLSACS  G+   G + F SM ++H I PR 
Sbjct: 203 KHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRM 262

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HYACM++LLGR GLL EA   I   P      +W  LL ACRV+GN ELG+ AAE +  
Sbjct: 263 EHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILE 322

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
            EP+  + Y++L N++ S+G+ K+  ++ ++++ + L     CSWIEV+ + H F  G+ 
Sbjct: 323 QEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGET 382

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINT 648
           SH Q  +IY+++D++  +I + GY+P+   +L D+ +EQ+++ L  HSEK+AVAFGLI+T
Sbjct: 383 SHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLIST 442

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           S   P++I ++ R+C DCH AIK I+M TGREIVVRD++RFHH K+G+CSC DYW
Sbjct: 443 SQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 497



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 149/280 (53%), Gaps = 8/280 (2%)

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
           +E   +F  M+S        + N ++ M+ R G M DAR+ FD + E+NLVS N I+ G 
Sbjct: 44  KEAIELFCKMISASVNC---VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGY 100

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
             +    EAFLLF ++ +      + TFA+++  +A +  +  G+Q+H   LK G+  N 
Sbjct: 101 AKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQ 160

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
            +  ALI MYS+CG+IE A  VF+EM ++  + W ++I G+A HG++  AL+++++M ++
Sbjct: 161 CICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLET 220

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIED 385
           G K +  T+  ++  C+ +  +   ++    + + HG    +   + +VD   + G + +
Sbjct: 221 GTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVE 280

Query: 386 ARHVFDKM-LCKNVISWNALIAG---YGNHGRGEEAVELF 421
           A    + M L  + + W  L+     +GN   G  A E+ 
Sbjct: 281 AMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMI 320



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 101/210 (48%), Gaps = 3/210 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N +  EA  LF  +  + G  + + T+ +L+S    + ++ + +++   +L  G++ +  
Sbjct: 103 NLKSEEAFLLFNEIA-DTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC 161

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N ++ M+ RCG +  A ++F+EM +RN++S   +I G    G    A  +F  + E  
Sbjct: 162 ICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETG 221

Query: 227 SDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
           +     T+  ++ A + + +IS G K  +S   + G    +     ++D+  + G + +A
Sbjct: 222 TKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEA 281

Query: 286 QGVFDEMS-EKTTVGWNTIIAGYALHGYSE 314
               + M      + W T++    +HG +E
Sbjct: 282 MEFINSMPLMADALVWRTLLGACRVHGNTE 311


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/551 (38%), Positives = 323/551 (58%), Gaps = 11/551 (1%)

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           GF+ +L++ + +  M+ +CG++ +A R+FD+MP+++ V+   +I G   +G    A L F
Sbjct: 71  GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSF 130

Query: 220 LDLWEE-FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
            D+  E         F +++ AS GL+   + K +H C  K GF   V V  ALIDMY+K
Sbjct: 131 RDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAK 190

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY-----SEEALDLYYEMRDSGVKMDHF 333
              +E A  V     +    GWN +     + GY      EEAL +Y E+R  GV+ + F
Sbjct: 191 SMDVESASRVL----KIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEF 246

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           TFS +I+ C   A LE   Q HA +++     D    S LVD Y K G I  +  +F+++
Sbjct: 247 TFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEI 306

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             +  I+WNA+I  +  HG G EA++ F++M+ +G+RPNH+ F+++L+ACS +GL + G 
Sbjct: 307 EYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGL 366

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           + F SM   H I+P+  HY+C+I+  GR G LDEA+  I   P K     W +LL ACR+
Sbjct: 367 KYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRM 426

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACS 573
            G+ ELG+ AA+ L  +EP     +V L  IY S G+ ++   V + +R   ++ LP  S
Sbjct: 427 RGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFS 486

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVL 632
           W++  K+ HVF S D SH Q K+IY K++ +   I + GY+P+   L  ++++  ++R+L
Sbjct: 487 WVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERIL 546

Query: 633 SYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHF 692
            YHSE++AVAF LI+     P+ + ++ RIC DCH A K I  V  R+I+VRD SRFHHF
Sbjct: 547 RYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHF 606

Query: 693 KDGMCSCGDYW 703
            +G CSCGDYW
Sbjct: 607 VNGRCSCGDYW 617



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 171/367 (46%), Gaps = 34/367 (9%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   +K +    + I+    N     A+  F  ++ EG        + +++SA  GL+  
Sbjct: 100 DQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDG 159

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER-NLVSCNMIIAG 205
              K +   +   GFE ++ +RN ++ M+ +   +  A R+    P   N+VS   +I G
Sbjct: 160 WLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDG 219

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
            I++    EA +++++L  +  +    TF++MI+  A   L+  G QLH+  +K     +
Sbjct: 220 YIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRD 279

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
            FV   L+DMY KCG I  +  +F+E+  +T + WN +I  +A HG+  EA+  +  M  
Sbjct: 280 SFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIY 339

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
           SG++ +H  F  ++  C+           HAGLV  G          L  FYS    +++
Sbjct: 340 SGIRPNHIAFVSLLTACS-----------HAGLVDEG----------LKYFYS----MKE 374

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           A  +  K        ++ +I  YG  GR +EA +   +M +   +PN   + ++L AC  
Sbjct: 375 AHGIEPKEE-----HYSCIIDTYGRAGRLDEAYKFISEMPI---KPNAYGWCSLLGACRM 426

Query: 446 SGLSERG 452
            G  E G
Sbjct: 427 RGSKELG 433



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 80/164 (48%), Gaps = 6/164 (3%)

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M  +  V W T+++G + +    +AL  +  MR +GV    F  S   R    L +    
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 60

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
            Q H   VR GF  ++   S L D YSK G + +A  VFD+M  K+ ++W A+I GY  +
Sbjct: 61  AQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKN 120

Query: 412 GRGEEAVELFEQMLLNGM--RPNHVTFLAVLSACSRSGLSERGW 453
           G  E AV  F  M   G+     HV F +VLSA   SG  + GW
Sbjct: 121 GSLEAAVLSFRDMKREGLVGADQHV-FCSVLSA---SGGLKDGW 160


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/569 (38%), Positives = 342/569 (60%), Gaps = 9/569 (1%)

Query: 137 ISACIGLRSIREVK-RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           +++C  + + RE+  RVF  +L      D ++ ++++  + + G   DA +LFD+MP ++
Sbjct: 49  VNSCPSISNCREIHARVFKSLLYR----DGFIGDQLVTCYNKLGYAEDALKLFDDMPHKD 104

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
           LVS N +I+G      ++     +   +E        T  +MI A  G   +  GK +H 
Sbjct: 105 LVSWNSLISGF-SRCLHMSLTAFYTMKFEMSVKPNEVTILSMISACNG--ALDAGKYIHG 161

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
             +K+G    V V+ +LI+MY K G +  A  +F+ + +  TV WN+IIA    +G + E
Sbjct: 162 FGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCARE 221

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
            +D + +MR  G++ D  T   +++ C  L   + A+  H  +   GFG  I   +AL+D
Sbjct: 222 GIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLD 281

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            Y+K GR+  +  VF ++   + ++W A++AGY  HG G EA++LFE M   G+ P+HVT
Sbjct: 282 TYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVT 341

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
           F  +LSACS SGL   G   F  MS  + I+PR  HY+CM++LLGR GLL++A+ +I+  
Sbjct: 342 FTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNM 401

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           P +    +W ALL ACRV+GN+ELGK  AE L  MEP    NY++L N+Y++S   K+AA
Sbjct: 402 PMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAA 461

Query: 556 EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
           +V   L+ +GL+  P  S IE   + H F  GD+SH +T++IY K++ ++ +I K GY  
Sbjct: 462 KVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSS 521

Query: 616 EEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
           + + +L DV+E+ ++ +++ HSEKLA+AFGL+ + +   L I ++ RIC DCH+  KLI+
Sbjct: 522 KTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLIS 581

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++  R I++RD  RFHHF DG CSC DYW
Sbjct: 582 LIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/286 (21%), Positives = 117/286 (40%), Gaps = 12/286 (4%)

Query: 36  SLLSGCYFSLDKRKWKRSFQ-----RVECCLMEQGLKPRPKPNKIYTEELKESSLPDTQM 90
           S++S C  +LD  K+   F       +E  +    +    K   + +      ++PD   
Sbjct: 144 SMISACNGALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNT 203

Query: 91  KKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVK 150
              ++ I +Q    V N   RE ++ F  +    G +    T  AL+ AC+ L   +  +
Sbjct: 204 VSWNSIIAAQ----VTNGCAREGIDYFNKMR-RLGIEQDEGTILALLQACLHLGVGKLAE 258

Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG 210
            +   M  TGF   + +   +L  + + G +  +  +F E+   + V+   ++AG    G
Sbjct: 259 SIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHG 318

Query: 211 DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM-GFGDNVFVS 269
              EA  LF  +  +  +    TF  ++ A +   L++ GK   +   ++ G    V   
Sbjct: 319 LGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHY 378

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYSE 314
             ++D+  +CG + DA  V   M  +   G W  ++    +HG  E
Sbjct: 379 SCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIE 424


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/603 (35%), Positives = 346/603 (57%), Gaps = 35/603 (5%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMH----------------- 175
           +  L  AC   R++R ++++ ++  ++G   D +  N ++L +                 
Sbjct: 47  FSHLFRAC---RALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIP 103

Query: 176 --------------VRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
                         ++ G +  AR+LFDEMPERN+ + N ++AG+ + G   E+   FLD
Sbjct: 104 RRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLD 163

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           +  E          ++ R  AGL  +  G+Q+H+  ++ G   ++ V  +L  MY +CG 
Sbjct: 164 MRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGC 223

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           +++ + V   +   + V  NTIIAG   +G SE AL+ +  MR  GV  D  TF   I  
Sbjct: 224 LQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISS 283

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C+ LA+L   +Q H  +++ G    +   + LV  YS+ G + D+  VF      +    
Sbjct: 284 CSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLL 343

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           +A+I+ YG HG G++A+ELF+QM+  G  P+ VTFLA+L ACS SGL E G + F+ M++
Sbjct: 344 SAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTK 403

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
            + ++P   HY C+++LLGR G LDEA ALI   P      +W  LL+AC+   N ++ +
Sbjct: 404 TYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAE 463

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
             A+++  ++P   ++YV+L NI  +S +  + +EV + +R   +R  P  SW+E+K   
Sbjct: 464 RIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHI 523

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLA 640
           H F +GD+SH + KEI   ++ MM +I + GY P+   +L D++++E+ V LS+HSEKLA
Sbjct: 524 HQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLA 583

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AF  ++  +  P++++++ R+C DCH AIKL++ VTGREIVVRD SRFHHFKDG CSC 
Sbjct: 584 IAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRDVSRFHHFKDGRCSCR 643

Query: 701 DYW 703
           DYW
Sbjct: 644 DYW 646


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/527 (39%), Positives = 314/527 (59%), Gaps = 4/527 (0%)

Query: 181 MIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT---FATM 237
           +  AR LFD MP R+  S + I++  +  G    A  ++  +  E    G+      ++ 
Sbjct: 109 LASARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSA 168

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           + A+        G++LH   ++ G   +  V  AL DMY+K G ++DA+ VFD M  +  
Sbjct: 169 LAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDV 228

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           V W  ++  Y   G   E   L+  M  SG+  + FT++ ++R C    S +  KQ H  
Sbjct: 229 VSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGR 288

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           + +   G    A SALV  YSK+G +  A  VF  M   +++SW A+I+GY  +G+ +EA
Sbjct: 289 MAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEA 348

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           +  F+ +L +G RP+HVTF+ VLSAC+ +GL ++G  IF S+   + I+  A HYAC+I+
Sbjct: 349 LHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVID 408

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
           LL R GL + A  +I   P K  K +WA+LL  CR++ N+ L  +AAE L+ +EPE  + 
Sbjct: 409 LLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPAT 468

Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI 597
           YV L NIY S G   E   + RT+  +G+  +PA SWIEV  + HVFL GD+SH Q +EI
Sbjct: 469 YVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEEI 528

Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQI 656
           Y  + ++ +++ + GYV +   +L DV DEQ+Q+ + YHSE+LAVAFG+I T   +P+++
Sbjct: 529 YALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSPIKV 588

Query: 657 VQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++ RIC DCH  IKLI+ +  REI+VRD++RFHHFK+G CSC DYW
Sbjct: 589 FKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 129/266 (48%), Gaps = 24/266 (9%)

Query: 155 YMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLE 214
           +++  G + D  + + +  M+ + G + DAR +FD MP R++VS   ++    D+G   E
Sbjct: 187 HVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGE 246

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
            F LF+ +          T+A ++RA A      +GKQ+H    K   GD+ F   AL+ 
Sbjct: 247 GFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSALVH 306

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MYSK G +  A  VF  M +   V W  +I+GYA +G  +EAL  +  +  SG + DH T
Sbjct: 307 MYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVT 366

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHG----------FGLDIVAN--SALVDFYSKWGR 382
           F  ++  C           AHAGLV  G          +G++  A+  + ++D  S+ G 
Sbjct: 367 FVGVLSAC-----------AHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGL 415

Query: 383 IEDARHVFDKMLCK-NVISWNALIAG 407
            E A  + + M  K N   W +L+ G
Sbjct: 416 FERAEDMINTMPVKPNKFLWASLLGG 441


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/551 (38%), Positives = 323/551 (58%), Gaps = 11/551 (1%)

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           GF+ +L++ + +  M+ +CG++ +A R+FD+MP+++ V+   +I G   +G    A L F
Sbjct: 152 GFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSF 211

Query: 220 LDLWEE-FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
            D+  E         F +++ AS GL+   + K +H C  K GF   V V  ALIDMY+K
Sbjct: 212 RDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAK 271

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY-----SEEALDLYYEMRDSGVKMDHF 333
              +E A  V     +    GWN +     + GY      EEAL +Y E+R  GV+ + F
Sbjct: 272 SMDVESASRVL----KIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEF 327

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           TFS +I+ C   A LE   Q HA +++     D    S LVD Y K G I  +  +F+++
Sbjct: 328 TFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEI 387

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             +  I+WNA+I  +  HG G EA++ F++M+ +G+RPNH+ F+++L+ACS +GL + G 
Sbjct: 388 EYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGL 447

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           + F SM   H I+P+  HY+C+I+  GR G LDEA+  I   P K     W +LL ACR+
Sbjct: 448 KYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRM 507

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACS 573
            G+ ELG+ AA+ L  +EP     +V L  IY S G+ ++   V + +R   ++ LP  S
Sbjct: 508 RGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFS 567

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVL 632
           W++  K+ HVF S D SH Q K+IY K++ +   I + GY+P+   L  ++++  ++R+L
Sbjct: 568 WVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERIL 627

Query: 633 SYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHF 692
            YHSE++AVAF LI+     P+ + ++ RIC DCH A K I  V  R+I+VRD SRFHHF
Sbjct: 628 RYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHF 687

Query: 693 KDGMCSCGDYW 703
            +G CSCGDYW
Sbjct: 688 VNGRCSCGDYW 698



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 171/367 (46%), Gaps = 34/367 (9%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   +K +    + I+    N     A+  F  ++ EG        + +++SA  GL+  
Sbjct: 181 DQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDG 240

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER-NLVSCNMIIAG 205
              K +   +   GFE ++ +RN ++ M+ +   +  A R+    P   N+VS   +I G
Sbjct: 241 WLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDG 300

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
            I++    EA +++++L  +  +    TF++MI+  A   L+  G QLH+  +K     +
Sbjct: 301 YIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRD 360

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
            FV   L+DMY KCG I  +  +F+E+  +T + WN +I  +A HG+  EA+  +  M  
Sbjct: 361 SFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIY 420

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
           SG++ +H  F  ++  C+           HAGLV  G          L  FYS    +++
Sbjct: 421 SGIRPNHIAFVSLLTACS-----------HAGLVDEG----------LKYFYS----MKE 455

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           A  +  K        ++ +I  YG  GR +EA +   +M    ++PN   + ++L AC  
Sbjct: 456 AHGIEPKEE-----HYSCIIDTYGRAGRLDEAYKFISEM---PIKPNAYGWCSLLGACRM 507

Query: 446 SGLSERG 452
            G  E G
Sbjct: 508 RGSKELG 514



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 100/207 (48%), Gaps = 7/207 (3%)

Query: 250 GKQLHS-CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           G+ LH+   L      + F++  LI MYS C  +  A  +F  M  +  V W T+++G +
Sbjct: 39  GRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLS 98

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
            +    +AL  +  MR +GV    F  S   R    L +     Q H   VR GF  ++ 
Sbjct: 99  QNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELF 158

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             S L D YSK G + +A  VFD+M  K+ ++W A+I GY  +G  E AV  F  M   G
Sbjct: 159 VASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREG 218

Query: 429 M--RPNHVTFLAVLSACSRSGLSERGW 453
           +     HV F +VLSA   SG  + GW
Sbjct: 219 LVGADQHV-FCSVLSA---SGGLKDGW 241


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/663 (34%), Positives = 370/663 (55%), Gaps = 44/663 (6%)

Query: 83  SSLPDTQMKKPSAGIC---SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISA 139
           SS    ++  PS  +    S I  L  N  + EAL L+   +        + T+ ++I+A
Sbjct: 66  SSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQ-RIRLQPDTYTFPSVINA 124

Query: 140 CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSC 199
           C GL      K +   +L  GF  DLY+ N ++ M+ R   +  AR++F+EMP R++VS 
Sbjct: 125 CAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSW 184

Query: 200 NMIIAGMIDSG-------DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           N +I+G   +G        Y ++  LF+++  +F      T  ++++A   L  +  GK 
Sbjct: 185 NSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKP-DLLTITSILQACGHLGDLEFGKY 243

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG- 311
           +H   +  G+  +   S  LI+MY+KCG++  +Q VF  M  K +V WN++I  Y  +G 
Sbjct: 244 VHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGK 303

Query: 312 ---------------------------YSEE---ALDLYYEMRDSGVKMDHFTFSMIIRI 341
                                      +SE+    L +   MR  GV  D  T   I+ +
Sbjct: 304 MGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPV 363

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C+ LA+    K+ H  + + G   D+   + L++ YSK G + ++  VF  M  K+V++W
Sbjct: 364 CSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTW 423

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
            ALI+  G +G G++AV  F +M   G+ P+HV F+A++ ACS SGL E G   F  M +
Sbjct: 424 TALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKK 483

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           D+KI+PR  HYAC+++LL R  LLD+A   I   P K   ++W ALL+ACR++G+ E+ +
Sbjct: 484 DYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAE 543

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
             +E++  + P+    YV++ NIY + GK  +   + ++++ +GL+  P CSW+E++ + 
Sbjct: 544 RVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKV 603

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLA 640
           +VF +G +   Q +E+ + +  +   ++K GY+   + +L D+DE E+R +L  HSE+LA
Sbjct: 604 YVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLA 663

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AFGL+NT   TPLQ++++ R+C DCH   K I+ +  RE++VRDA+RFH FKDG CSCG
Sbjct: 664 IAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCG 723

Query: 701 DYW 703
           DYW
Sbjct: 724 DYW 726



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 172/373 (46%), Gaps = 29/373 (7%)

Query: 228 DCGSRT-FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
           +C  +T F+++ RA A     +   +LHS  + +G   +V  S  LI  Y+       + 
Sbjct: 9   ECSRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSF 68

Query: 287 GVFDEMSEKTTVG-WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
            VF   S    V  WN+II     +G   EAL LY E +   ++ D +TF  +I  C  L
Sbjct: 69  SVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGL 128

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
              E AK  H  ++  GFG D+   +AL+D Y ++  ++ AR VF++M  ++V+SWN+LI
Sbjct: 129 LDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLI 188

Query: 406 AGYGNHGRGEEAVELFEQM------LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           +GY  +G   EA+E++ Q       ++N  +P+ +T  ++L AC   G  E G  +   M
Sbjct: 189 SGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYM 248

Query: 460 -SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
            +  ++    A +   +I +  + G L  +  +  G   K + + W +++     NG + 
Sbjct: 249 ITSGYECDTTASN--ILINMYAKCGNLLASQEVFSGMKCKDSVS-WNSMINVYIQNGKM- 304

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNS---SGKLKEAAEVIRTLRRKG--------LR 567
                 + L   E  K  + +    I  S   S        +I  +R +G        L 
Sbjct: 305 -----GDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLS 359

Query: 568 MLPACSWIEVKKQ 580
           +LP CS +  K+Q
Sbjct: 360 ILPVCSLLAAKRQ 372


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/548 (37%), Positives = 336/548 (61%), Gaps = 7/548 (1%)

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS-GDYLEAF 216
           S G    +++ N ++ M+ + G++ DA RLFD MPERN+V+   ++A + ++ G   EA 
Sbjct: 108 SGGAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEAL 167

Query: 217 LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276
              + +W +     + TF++++ A     +++    LH+  +K+G   +VFV  +LID Y
Sbjct: 168 RFLVAMWRDGVAPNAYTFSSVLGACGTPGVLAA---LHASTVKVGLDSDVFVRSSLIDAY 224

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
            K G ++  + VFDEM  +  V WN+IIAG+A  G    A++L+  M+D+G   +  T +
Sbjct: 225 MKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLT 284

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            ++R CT +  LE  +Q HA +++  +  D++ ++AL+D Y K G +EDA  +F +M  +
Sbjct: 285 SVLRACTGMVMLEAGRQVHAHVLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQR 342

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           +VISW+ +I+G   +G+  EA+ +F+ M   G+ PN +T + VL ACS +GL E GW  F
Sbjct: 343 DVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYF 402

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
           +SM +   I+P   H+ CM++LLGR G LDEA   IR    +    +W  LL ACR++ +
Sbjct: 403 RSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKS 462

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
             L  +AA ++  +EP+     V+L N Y    +  +A +  + +R +G++  P  SWIE
Sbjct: 463 GNLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIE 522

Query: 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYH 635
           ++K  HVF++GD SH  +  I ++++R++  IS  GYVP+ + +L D+  EQ++ +L YH
Sbjct: 523 LEKHVHVFIAGDLSHPCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYH 582

Query: 636 SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
           SEK+A+AFG ++     P++I+++ RIC DCH   KL++   GR I++RD  RFHHF+DG
Sbjct: 583 SEKMAIAFGTMHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDG 642

Query: 696 MCSCGDYW 703
            CSCGDYW
Sbjct: 643 ACSCGDYW 650



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 169/332 (50%), Gaps = 30/332 (9%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           + R  EAL  F +  +  G    + T+ +++ AC G   +  +  + +  +  G + D++
Sbjct: 160 DGRKEEALR-FLVAMWRDGVAPNAYTFSSVLGAC-GTPGV--LAALHASTVKVGLDSDVF 215

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +R+ ++  +++ G +   RR+FDEM  R+LV  N IIAG   SGD + A  LF+ + +  
Sbjct: 216 VRSSLIDAYMKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAG 275

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 T  +++RA  G+ ++  G+Q+H+  LK  +  ++ +  AL+DMY KCGS+EDA+
Sbjct: 276 FSANQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YERDLILHNALLDMYCKCGSLEDAE 333

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +F  M ++  + W+T+I+G A +G S EAL ++  M+  GV  +  T   ++  C+   
Sbjct: 334 ALFHRMPQRDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACS--- 390

Query: 347 SLEHAKQAHAGLVRHG----------FGL--DIVANSALVDFYSKWGRIEDA-RHVFDKM 393
                   HAGLV  G          FG+  +   ++ +VD   + G++++A   + D  
Sbjct: 391 --------HAGLVEDGWYYFRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMN 442

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           L  + + W  L+     H  G  A     ++L
Sbjct: 443 LEPDAVIWRTLLGACRMHKSGNLAAYAAREIL 474



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 9/129 (6%)

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH--------GFGLDIVANSALVDFYSKW 380
           + D  + + ++++C R  +    +  H  +  H        G G  I  +++LV  Y+K+
Sbjct: 69  RADPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKF 128

Query: 381 GRIEDARHVFDKMLCKNVISWNALIAGYGN-HGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
           G ++DA  +FD+M  +NV++W  ++A   N  GR EEA+     M  +G+ PN  TF +V
Sbjct: 129 GLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSV 188

Query: 440 LSACSRSGL 448
           L AC   G+
Sbjct: 189 LGACGTPGV 197


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/574 (36%), Positives = 340/574 (59%), Gaps = 8/574 (1%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL---LMHVRCGMMIDARRLFDEM 191
           +L+S C    S+ E+K++ +Y + T  + D+ +  +++    ++     M  A  LFD++
Sbjct: 34  SLLSKCT---SLNELKQIQAYTIKTNLQSDISVLTKLINFCTLNPTTSYMDHAHHLFDQI 90

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            +++++  N++  G   S     AF LF +L          TF+++++A A  + +  G 
Sbjct: 91  LDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGM 150

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            LH  A+K+G   N+++   LI+MY++C  +  A+GVFDEM +   V +N II GYA   
Sbjct: 151 GLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSS 210

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
              EAL L+ E++ S ++    T   +I  C  L +L+  K  H  + + GF   +  N+
Sbjct: 211 QPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNT 270

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           AL+D ++K G + DA  +F+ M  ++  +W+A+I  +  HG G +A+ +FE+M   G+RP
Sbjct: 271 ALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRP 330

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           + +TFL +L ACS +GL E+G   F SMS+ + I P   HY CM++LLGR G LDEA+  
Sbjct: 331 DEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNF 390

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           +     K T  +W  LL+AC  +GN+E+ K   E+++ ++     +YV+L N+Y   G+ 
Sbjct: 391 VDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRW 450

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
           ++   + + ++ +G+  +P CS +EV    H F SGD  H  + E+ R +D +M EI   
Sbjct: 451 EDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLV 510

Query: 612 GYVPEEKTLL-PDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
           GYVP+   +   D++E+ ++ VL YHSEKLA+AFGL+NT   T +++ ++ RIC DCHNA
Sbjct: 511 GYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNA 570

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            KLI+ + GR+IV+RD  RFH F+DG CSCGD+W
Sbjct: 571 AKLISFIFGRKIVIRDVQRFHRFEDGKCSCGDFW 604



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 149/296 (50%), Gaps = 2/296 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+ +L+ AC   +++RE   +  + +  G   ++Y+   ++ M+  C  M  AR +FDEM
Sbjct: 132 TFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEM 191

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            +  +VS N II G   S    EA  LF +L     +    T  ++I + A L  + +GK
Sbjct: 192 EQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGK 251

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            +H    K GF   V V+ ALIDM++KCGS+ DA  +F+ M  + T  W+ +I  +A HG
Sbjct: 252 WIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFATHG 311

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVAN 370
              +A+ ++ EM+  GV+ D  TF  ++  C+    +E  +     + + +G    I   
Sbjct: 312 DGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGIKHY 371

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNV-ISWNALIAGYGNHGRGEEAVELFEQML 425
             +VD   + G +++A +  DK+  K   I W  L++    HG  E A  + E++ 
Sbjct: 372 GCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIF 427


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/526 (41%), Positives = 318/526 (60%), Gaps = 6/526 (1%)

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDS-GDYLEAFLLFLDLWEEFSDCGSRTFATMIRAS 241
           DA  +F  MPE + VS N +I  + DS     +A   FL +          TF  ++ A 
Sbjct: 389 DAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAV 448

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE-KTTVGW 300
           + L L  V  Q+H+  LK    D+  +  AL+  Y KCG + + + +F  MSE +  V W
Sbjct: 449 SSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSW 508

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           N++I+GY  +    +A+DL + M   G ++D FTF+ I+  C  +A+LE   + HA  +R
Sbjct: 509 NSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIR 568

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
                D+V  SALVD YSK GRI+ A   F+ M  +NV SWN++I+GY  HG GE+A++L
Sbjct: 569 ACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKL 628

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
           F +M+L+G  P+HVTF+ VLSACS  G  E G+E F+SMS  +++ PR  H++CM++LLG
Sbjct: 629 FTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLG 688

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTA-CRVNG-NLELGKFAAEKLYGMEPEKLSNY 538
           R G LDE    I   P K    +W  +L A CR NG N ELG+ AAE L  +EP+   NY
Sbjct: 689 RAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNY 748

Query: 539 VVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIY 598
           V+L N+Y S  K ++ A+    ++   ++    CSW+ +K   HVF++GD+ H +   IY
Sbjct: 749 VLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIY 808

Query: 599 RKVDRMMLEISKHGYVPEEKTLLPD-VDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIV 657
            K+  +  ++   GY+P+ K  L D   E ++ +LSYHSEK+AVAF L   S   P++I+
Sbjct: 809 DKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAFVLTRQSA-LPIRIM 867

Query: 658 QSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++ R+C DCH+A   I+ + GR+IV+RD++RFHHF+DG CSCGDYW
Sbjct: 868 KNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 913



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/362 (28%), Positives = 167/362 (46%), Gaps = 36/362 (9%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S T+++LI+   G     E + +    +  GF  +L++ N ++ ++VR G +  A++LFD
Sbjct: 99  SETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFD 158

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA--SAGLELI 247
           EM  RNLV+   +I+G   +G   EA   F D+           F + +RA   +G    
Sbjct: 159 EMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGC 218

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKC-GSIEDAQGVFDEMSEKTTVGWNTIIAG 306
            +G Q+H    K  +G +V V   LI MY  C  S  DA+ VFD +  + ++ WN+II+ 
Sbjct: 219 KLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISV 278

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           Y+  G +  A DL+  M+  G+                       ++ HA ++R G   +
Sbjct: 279 YSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRKGREVHAHVIRTGLNDN 338

Query: 367 IVA-NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE--- 422
            VA  + LV+ Y+K G I DA  VF+ M+ K+ +SWN+LI+G   +   E+A E+F    
Sbjct: 339 KVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMP 398

Query: 423 -----------------------------QMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
                                        QM+  G   + VTF+ +LSA S   L E   
Sbjct: 399 EYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSH 458

Query: 454 EI 455
           +I
Sbjct: 459 QI 460



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 177/376 (47%), Gaps = 31/376 (8%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           S TF ++I    G       ++LH  ++K GF  N+F+S  LI++Y + G +  AQ +FD
Sbjct: 99  SETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFD 158

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC--TRLASL 348
           EMS +  V W  +I+GY  +G  +EA   + +M  +G   +H+ F   +R C  +  +  
Sbjct: 159 EMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGC 218

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFY-SKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           +   Q H  + +  +G D+V  + L+  Y S      DAR VFD +  +N ISWN++I+ 
Sbjct: 219 KLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISV 278

Query: 408 YGNHGRGEEAVELFEQMLLNGM----RPNHV-TFLAVLSACSRSGLSERGWEIFQSMSRD 462
           Y   G    A +LF  M   G+    +PN   +  +VL    R G  E    + ++   D
Sbjct: 279 YSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRKG-REVHAHVIRTGLND 337

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
           +K+         ++ +  + G + +A ++      K + + W +L++    N   E  + 
Sbjct: 338 NKVAIG----NGLVNMYAKSGAIADACSVFELMVEKDSVS-WNSLISGLDQN---ECSED 389

Query: 523 AAEKLYGMEPE--KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG--------LRMLPAC 572
           AAE ++ + PE  ++S   V+  + +S   + +A +    + R G        + +L A 
Sbjct: 390 AAE-MFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAV 448

Query: 573 SWI---EVKKQPHVFL 585
           S +   EV  Q H  +
Sbjct: 449 SSLSLHEVSHQIHALV 464



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/210 (21%), Positives = 93/210 (44%), Gaps = 3/210 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   + N+   +A++L   +  + G  + S T+  ++SAC  + ++     V +  + 
Sbjct: 510 SMISGYIHNELLHKAMDLVWFM-MQKGQRLDSFTFATILSACASVATLERGMEVHACGIR 568

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
              E D+ + + ++ M+ +CG +  A R F+ MP RN+ S N +I+G    G   +A  L
Sbjct: 569 ACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKL 628

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYS 277
           F  +  +       TF  ++ A + +  +  G +   S +        V     ++D+  
Sbjct: 629 FTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLG 688

Query: 278 KCGSIEDAQGVFDEMSEKTTV-GWNTIIAG 306
           + G +++     + M  K  V  W T++  
Sbjct: 689 RAGKLDEVGDFINSMPMKPNVLIWRTVLGA 718


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/596 (36%), Positives = 361/596 (60%), Gaps = 8/596 (1%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E++++F  LE    F     T  +++ AC  LR +   K +++YML  GF  +  ++N +
Sbjct: 291 ESVKMF--LENLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNIL 348

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF--LDLWEEFSDC 229
           + ++ +CG MI AR +F+ M  ++ VS N II+G I SGD +EA  LF  + + EE +D 
Sbjct: 349 IDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQAD- 407

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              T+  +I  S  L  +  GK LHS  +K G   ++ VS ALIDMY+KCG + D+  +F
Sbjct: 408 -HITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIF 466

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           + M    TV WNT+I+     G     L +  +MR + V  D  TF + + +C  LA+  
Sbjct: 467 NSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKR 526

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             K+ H  L+R G+  ++   +AL++ YSK G +E +  VF++M  ++V++W  +I  YG
Sbjct: 527 LGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYG 586

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            +G GE+A+E F  M  +G+ P+ V F+A++ ACS SGL E+G   F+ M   +KI P  
Sbjct: 587 MYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMI 646

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HYAC+++LL R   + +A   I+  P +   ++WA++L ACR +G++E  +  + ++  
Sbjct: 647 EHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIE 706

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           + P+     ++  N Y +  K  + + + +++R K ++  P  SWIE+ K+ HVF SGD 
Sbjct: 707 LNPDDPGYSILASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDD 766

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV--DEQEQRVLSYHSEKLAVAFGLIN 647
           S  Q++ I++ ++ +   ++K GY+P+ + +  ++  +E+++R++  HSE+LA+AFGL+N
Sbjct: 767 SAPQSEAIHKSLEILYSLMAKEGYIPDSREVSQNLEEEEEKRRLICGHSERLAIAFGLLN 826

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T   TPLQ++++ R+C DCH   KLI+ + GREI+VRDA+RFH FKDG+CSC D W
Sbjct: 827 TEPGTPLQVMKNLRVCSDCHEVTKLISKIVGREILVRDANRFHLFKDGICSCKDRW 882



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/347 (34%), Positives = 189/347 (54%), Gaps = 2/347 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I     N  + +ALE +  L  E        T+ ++I AC GL        V+  +L 
Sbjct: 76  SIIRAFSKNGWFPKALEFYGKLR-ESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILE 134

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GFE DLY+ N ++ M+ R G++  AR++FDEMP R+LVS N +I+G    G Y EA  +
Sbjct: 135 MGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEI 194

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           + +L   +    S T ++++ A A L ++  G+ LH   LK G      V+  L+ MY K
Sbjct: 195 YHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLK 254

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
                DA+ VFDEM  + +V +NT+I GY      EE++ ++ E  D   K D  T + +
Sbjct: 255 FSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENLDQ-FKPDILTVTSV 313

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C  L  L  AK  +  ++R GF L+    + L+D Y+K G +  AR VF+ M CK+ 
Sbjct: 314 LCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDT 373

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           +SWN++I+GY   G   EA++LF+ M++   + +H+T+L ++S  +R
Sbjct: 374 VSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTR 420



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 167/300 (55%), Gaps = 2/300 (0%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM-PERNLVSCNMII 203
           ++ E++R+ + ++S G +   +   +++  +        +  +F  + P +N+   N II
Sbjct: 19  NLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSII 78

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
                +G + +A   +  L E        TF ++I+A AGL    +G  ++   L+MGF 
Sbjct: 79  RAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFE 138

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
            +++V  AL+DMYS+ G +  A+ VFDEM  +  V WN++I+GY+ HGY EEAL++Y+E+
Sbjct: 139 SDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHEL 198

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
           R+S +  D FT S ++     L  ++  +  H   ++ G     V N+ L+  Y K+ R 
Sbjct: 199 RNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRP 258

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
            DAR VFD+M+ ++ +++N +I GY      EE+V++F +  L+  +P+ +T  +VL AC
Sbjct: 259 TDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLEN-LDQFKPDILTVTSVLCAC 317



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 39/184 (21%), Positives = 86/184 (46%), Gaps = 3/184 (1%)

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-L 394
           + I R  +  ++L   ++ HA ++  G       +  L+D YS +     +  VF ++  
Sbjct: 8   AFISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSP 67

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
            KNV  WN++I  +  +G   +A+E + ++  + + P+  TF +V+ AC+    +E G  
Sbjct: 68  AKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDL 127

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
           +++ +  +   +        ++++  R GLL  A  +    P +   + W +L++    +
Sbjct: 128 VYKQI-LEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVS-WNSLISGYSSH 185

Query: 515 GNLE 518
           G  E
Sbjct: 186 GYYE 189


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/581 (37%), Positives = 348/581 (59%), Gaps = 16/581 (2%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           S++ ++I  C  L+ +R  +++   ++  GF  D  +R  +++ + +C  M+DA RLF E
Sbjct: 296 SSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKE 355

Query: 191 MP-ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLE 245
           +    N+VS   +I+G + +    EA    +DL+ E    G R    T++ ++ A   L 
Sbjct: 356 IGCVGNVVSWTAMISGFLQNDGKEEA----VDLFSEMKRKGVRPNEFTYSVILTA---LP 408

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
           +IS   ++H+  +K  +  +  V  AL+D Y K G +E+A  VF  + +K  V W+ ++A
Sbjct: 409 VIS-PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLA 467

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL-ASLEHAKQAHAGLVRHGFG 364
           GYA  G +E A+ ++ E+   G+K + FTFS I+ +C    AS+   KQ H   ++    
Sbjct: 468 GYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLD 527

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
             +  +SAL+  Y+K G IE A  VF +   K+++SWN++I+GY  HG+  +A+++F++M
Sbjct: 528 SSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEM 587

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
               ++ + VTF+ V +AC+ +GL E G + F  M RD KI P   H +CM++L  R G 
Sbjct: 588 KKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQ 647

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L++A  +I   P      +W  +L ACRV+   ELG+ AAEK+  M+PE  + YV+L N+
Sbjct: 648 LEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNM 707

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           Y  SG  +E A+V + +  + ++  P  SWIEVK + + FL+GD+SH    +IY K++ +
Sbjct: 708 YAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDL 767

Query: 605 MLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
              +   GY P+   +L D+ DE ++ VL+ HSE+LA+AFGLI T   +PL I+++ R+C
Sbjct: 768 STRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVC 827

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHF-KDGMCSCGDYW 703
            DCH  IKLIA +  REIVVRD++RFHHF  DG+CSCGD+W
Sbjct: 828 GDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 196/371 (52%), Gaps = 11/371 (2%)

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           GF  D+ +   ++  +++     D R++FDEM ERN+V+   +I+G   +    E   LF
Sbjct: 123 GFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLF 182

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
           + +  E +   S TFA  +   A   +   G Q+H+  +K G    + VS +LI++Y KC
Sbjct: 183 MRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKC 242

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           G++  A+ +FD+   K+ V WN++I+GYA +G   EAL ++Y MR + V++   +F+ +I
Sbjct: 243 GNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVI 302

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-KNV 398
           ++C  L  L   +Q H  +V++GF  D    +AL+  YSK   + DA  +F ++ C  NV
Sbjct: 303 KLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNV 362

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SW A+I+G+  +   EEAV+LF +M   G+RPN  T+  +L+A      SE   ++ ++
Sbjct: 363 VSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKT 422

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
                     A     +++   + G ++EA  +  G   K     W+A+L      G  E
Sbjct: 423 NYERSSTVGTA-----LLDAYVKLGKVEEAAKVFSGIDDKDIV-AWSAMLAGYAQTGETE 476

Query: 519 LGKFAAEKLYG 529
               AA K++G
Sbjct: 477 ----AAIKMFG 483



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 126/477 (26%), Positives = 219/477 (45%), Gaps = 49/477 (10%)

Query: 176 VRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFA 235
           V    + +A  LFD+ P R+  S   ++ G    G   EA  LFL++     +     F+
Sbjct: 38  VSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFS 97

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
           ++++ SA L     G+QLH   +K GF D+V V  +L+D Y K  + +D + VFDEM E+
Sbjct: 98  SVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKER 157

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             V W T+I+GYA +  ++E L L+  M++ G + + FTF+  + +           Q H
Sbjct: 158 NVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVH 217

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
             +V++G    I  +++L++ Y K G +  AR +FDK   K+V++WN++I+GY  +G   
Sbjct: 218 TVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDL 277

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
           EA+ +F  M LN +R +  +F +V+  C+         ++  S+ +   +  + +  A M
Sbjct: 278 EALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALM 337

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPE 533
           +       +LD A  L +          W A+++    N   E  +  F+  K  G+ P 
Sbjct: 338 VAYSKCTAMLD-ALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPN 396

Query: 534 KLSNYVV------------------------------LLNIYNSSGKLKEAAEVIRTLRR 563
           + +  V+                              LL+ Y   GK++EAA+V   +  
Sbjct: 397 EFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDD 456

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTL 620
           K +      +W          L+G   + QT E    + +M  E++K G  P E T 
Sbjct: 457 KDI-----VAW-------SAMLAG---YAQTGETEAAI-KMFGELTKGGIKPNEFTF 497


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/590 (35%), Positives = 340/590 (57%), Gaps = 19/590 (3%)

Query: 124 GGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV------- 176
              +  SS+  +LI  C    S+RE+K++ +Y + T      +  N  +L  +       
Sbjct: 29  AALEPPSSSILSLIPKCT---SLRELKQIQAYTIKT------HQNNPTVLTKLINFCTSN 79

Query: 177 -RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFA 235
                M  A R+FD++P+ ++V  N +  G     D L A LL   +          TF+
Sbjct: 80  PTIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFS 139

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
           ++++A A L+ +  GKQLH  A+K+G GDN++V   LI+MY+ C  ++ A+ VFD++ E 
Sbjct: 140 SLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEP 199

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             V +N II   A +    EAL L+ E+++SG+K    T  + +  C  L +L+  +  H
Sbjct: 200 CVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSCALLGALDLGRWIH 259

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
             + ++GF   +  N+AL+D Y+K G ++DA  VF  M  ++  +W+A+I  Y  HG G 
Sbjct: 260 EYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGS 319

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
           +A+ +  +M    ++P+ +TFL +L ACS +GL E G+E F SM+ ++ I P   HY CM
Sbjct: 320 QAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCM 379

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535
           I+LLGR G L+EA   I   P K T  +W  LL++C  +GN+E+ K   ++++ ++    
Sbjct: 380 IDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDSHG 439

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTK 595
            +YV+L N+   +G+  +   + + +  KG   +P CS IEV    H F SGD  H  + 
Sbjct: 440 GDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSIEVNNVVHEFFSGDGVHSTST 499

Query: 596 EIYRKVDRMMLEISKHGYVPEEKTLL-PDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTP 653
            ++  +D ++ E+   GYVP+   +   D+ DE+++ VL YHSEKLA+ +GL+NT   T 
Sbjct: 500 ILHHALDELVKELKLAGYVPDTSLVFYADIEDEEKEIVLRYHSEKLAITYGLLNTPPGTT 559

Query: 654 LQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +++V++ R+C DCHNA K I+++ GR+I++RD  RFHHFKDG CSCGDYW
Sbjct: 560 IRVVKNLRVCVDCHNAAKFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 609



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 6/225 (2%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N R  EAL LF  L+ E G      T    +S+C  L ++   + +  Y+   GF+  + 
Sbjct: 214 NSRPNEALALFRELQ-ESGLKPTDVTMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVK 272

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   ++ M+ +CG + DA  +F +MP R+  + + +I      G   +A  +  ++ +  
Sbjct: 273 VNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAK 332

Query: 227 SDCGSRTFATMIRASAGLELISVGKQ-LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                 TF  ++ A +   L+  G +  HS   + G   ++     +ID+  + G +E+A
Sbjct: 333 VQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEA 392

Query: 286 QGVFDEMSEK-TTVGWNTIIAGYALHGYSEEA---LDLYYEMRDS 326
               DE+  K T + W T+++  + HG  E A   +   +E+ DS
Sbjct: 393 CKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELDDS 437


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/608 (35%), Positives = 355/608 (58%), Gaps = 44/608 (7%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   V N RY + L +F  +   GGF   + TY  ++ AC    ++R    +   +L  G
Sbjct: 91  IRSYVNNHRYDDGLLVFREM-VNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVG 149

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            + +L++ N ++ M+ +CG + +ARR+FDEM  +++VS N ++AG   +  + +A    L
Sbjct: 150 LDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDA----L 205

Query: 221 DLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276
           ++  E  D G +    T A+++ A A                     +NV          
Sbjct: 206 EICREMEDYGQKPDGCTMASLMPAVANTS-----------------SENVLY-------- 240

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
                    + +F  +  K  + WN +I  Y  +    +A+DLY +M    V+ D  TF+
Sbjct: 241 --------VEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITFA 292

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            ++  C  L++L   ++ H  + +     +++  ++L+D Y++ G ++DA+ VFD+M  +
Sbjct: 293 SVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFR 352

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           +V SW +LI+ YG  G+G  AV LF +ML +G  P+ + F+A+LSACS SGL + G   F
Sbjct: 353 DVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYF 412

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
           + M+ D++I PR  HYAC+++LLGR G +DEA+ +I+  P +  + +WA LL++CRV  N
Sbjct: 413 KQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFTN 472

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
           +++G  AA+ L  + PE+   YV+L NIY  +G+ KE  E+   ++RK +R  P  S +E
Sbjct: 473 MDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNVE 532

Query: 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYH 635
           +  Q H FL+GD SH Q+KEIY ++  ++ ++ + GYVPE  + L DV+E+++   L+ H
Sbjct: 533 LNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLAVH 592

Query: 636 SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
           SEKLA+ F L+NT ++  ++I ++ R+C DCH A KLI+ +  REI+VRD +RFHHFKDG
Sbjct: 593 SEKLAIVFALLNTQEYQ-IRITKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFKDG 651

Query: 696 MCSCGDYW 703
           +CSCGDYW
Sbjct: 652 VCSCGDYW 659



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 169/342 (49%), Gaps = 23/342 (6%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           +F  + +A      I   K+LH+    +    N  +   L+  Y+ CG     + VFDEM
Sbjct: 20  SFGLLAKALDQNPDIKTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEM 79

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
           S++  V +N +I  Y  +   ++ L ++ EM + G + D++T+  +++ C+   +L +  
Sbjct: 80  SDRNVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGL 139

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
             H  +++ G   ++   + L+  Y K G + +AR VFD+M+ K+V+SWN+++AGY ++ 
Sbjct: 140 LIHGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNM 199

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW--EIFQSMSRDHKIKPRAM 470
           R ++A+E+  +M   G +P+  T  +++ A + +      +  +IF ++ R + I     
Sbjct: 200 RFDDALEICREMEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLIS---- 255

Query: 471 HYACMIELLGREGLLDEAFALI------RGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
            +  MI +  +  L  +A  L       R  P   T   +A++L AC     L LG+   
Sbjct: 256 -WNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAIT---FASVLPACGDLSALLLGRRIH 311

Query: 525 EKLYGMEPEKLSNYVV----LLNIYNSSGKLKEAAEVIRTLR 562
           E +   E +KL   ++    L+++Y   G L +A  V   ++
Sbjct: 312 EYV---EKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMK 350


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/593 (36%), Positives = 350/593 (59%), Gaps = 3/593 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL L+  +  EG     SSTY  ++ AC     +R  +  +   +  G+  D+++   V
Sbjct: 88  EALSLYHRMASEG-VRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAV 146

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L ++ +CG M +A R+FD+M  R+LV    +I G+  +G   EA  ++  + ++  +   
Sbjct: 147 LNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKKRVEGDG 206

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
                +I+A   L    +G  +H   ++     +V V  +L+DMY+K G +E A  VF  
Sbjct: 207 VVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRR 266

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M  K  + W+ +I+G+A +G++  AL L  +M+  G K D  +   ++  C+++  L+  
Sbjct: 267 MLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFLKLG 326

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K  H  +VR     D V+++A++D YSK G +  AR VFD++  ++ ISWNA+IA YG H
Sbjct: 327 KSVHGYIVRR-LHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIH 385

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G GEEA+ LF QM    ++P+H TF ++LSA S SGL E+G   F  M  ++KI+P   H
Sbjct: 386 GSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSEKH 445

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           YACM++LL R G ++EA  LI     +    +W ALL+ C  +G   +G+ AA+K+  + 
Sbjct: 446 YACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLIGEMAAKKVLELN 505

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P+    Y ++ N + ++ +  E AEV + +++ G++ +P  S +EV  + H FL  D+SH
Sbjct: 506 PDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNGKLHAFLMEDKSH 565

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSD 650
            Q +EI + + ++  E+   GYVP+ + +L +++E+ ++R+L  HSE+LA+AFGL+NT  
Sbjct: 566 HQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCNHSERLAIAFGLLNTGP 625

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            T L I ++ R+C DCH A K I+ +  REIVVRD  RFHHFKDG+CSCGDYW
Sbjct: 626 GTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKDGVCSCGDYW 678


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/649 (34%), Positives = 370/649 (57%), Gaps = 43/649 (6%)

Query: 93  PSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRV 152
           PSA     I       + R AL ++  L  +  F+V +    +++ AC  +   +  K +
Sbjct: 88  PSAQWNFVITSYTKRNQPRNALNVYAQLR-KMDFEVDNFMAPSVLKACGQVSWTQLGKEI 146

Query: 153 FSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDY 212
             ++L  G + D+++ N ++LM+  C  +  AR +FD+M ER++VS     + MI S   
Sbjct: 147 HGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSW----STMIRSLSR 202

Query: 213 LEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
            + F + L+L  E +    R       +M+   A    + +GK +H+  ++    +++ V
Sbjct: 203 NKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGV 262

Query: 269 --SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG-------------------- 306
             + AL+DMY+KCG +  A+ +F+ +++KT V W  +IAG                    
Sbjct: 263 PTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNR 322

Query: 307 -----------YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
                      YA     ++A +L+ +MR SGV+    T   ++ +C    +L+  K  H
Sbjct: 323 DVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVH 382

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
           + + +    +D + N+ALVD Y+K G I  A  +F + + +++  WNA+I G+  HG GE
Sbjct: 383 SYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGE 442

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
           EA+++F +M   G++PN +TF+ +L ACS +GL   G ++F+ M     + P+  HY CM
Sbjct: 443 EALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCM 502

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535
           ++LLGR GLLDEA  +I+  P K    +W AL+ ACR++ N +LG+ AA +L  +EPE  
Sbjct: 503 VDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENC 562

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTK 595
              V++ NIY ++ +  +AA V +T++  G++  P  S IEV    H FL GDQSH Q +
Sbjct: 563 GYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIR 622

Query: 596 EIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPL 654
            I   +  M  ++++ GYVP+  T+L ++DE+E+   L+YHSEKLA+AFGLI+T+  TP+
Sbjct: 623 RINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPI 682

Query: 655 QIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +IV++ R+C DCH A KL++ + GR I+VRD +RFHHF++G CSCGDYW
Sbjct: 683 RIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 168/378 (44%), Gaps = 46/378 (12%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYD--ALISACIGLR 144
           D  M++      + I  L  NK +  ALEL   + F     V  S     ++++      
Sbjct: 183 DKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNF---MQVRPSEVAMVSMVNLFADTA 239

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLL--MHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           ++R  K + +Y++       + +     L  M+ +CG +  AR+LF+ + ++ +VS   +
Sbjct: 240 NMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAM 299

Query: 203 IAGMIDSGDYLEAFLLF---------------------------LDLWEEFSDCGSR--- 232
           IAG I S    EA  LF                            +L+++    G R   
Sbjct: 300 IAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTK 359

Query: 233 -TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T  +++   A    + +GK +HS   K     +  ++ AL+DMY+KCG I  A  +F E
Sbjct: 360 VTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIE 419

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
              +    WN II G+A+HGY EEALD++ EM   GVK +  TF  ++  C+    +   
Sbjct: 420 AISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEG 479

Query: 352 KQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAG- 407
           K+    +V H FGL   I     +VD   + G +++A  +   M  K N I W AL+A  
Sbjct: 480 KKLFEKMV-HTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAAC 538

Query: 408 --YGNHGRGE-EAVELFE 422
             + N   GE  A +L E
Sbjct: 539 RLHKNPQLGELAATQLLE 556


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/541 (37%), Positives = 330/541 (60%), Gaps = 7/541 (1%)

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS-GDYLEAFLLFLDLW 223
           L++ N +  M+ + G++ DA R+FD MP RN+V+   ++A +  + G   EA    + + 
Sbjct: 104 LFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMR 163

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
            +     + TF++++ A     +++    +H+  +K G   +VFV  +LID Y K G ++
Sbjct: 164 RDGVAPNAYTFSSVLGACTTPGMLTA---VHASTVKAGLDSDVFVRSSLIDAYVKLGDLD 220

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
             + VFDEM  +  V WN+IIAG+A  G    A++L+  M+D+G   +  T + ++R CT
Sbjct: 221 GGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACT 280

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            +  LE  +Q HA +++  +  D++ ++AL+D Y K G +EDA  +F +M  ++VISW+ 
Sbjct: 281 GMVMLEAGRQVHAHVLK--YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWST 338

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           +++G   +G+  EA+ +F+ M   G+ PNHVT + VL ACS +GL E GW  F+SM R  
Sbjct: 339 MVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLF 398

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            I+P   H+ CM++LLGR G LDEA   I G   +    +W  LL ACR++ N  L  +A
Sbjct: 399 GIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYA 458

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
           A ++  +EP+     V+L N Y    +  +A +  + +R +G+R  P  SWIE++K+ HV
Sbjct: 459 AREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHV 518

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVA 642
           F++GD SH  +  I ++++R++  I   GYVP+ + +L D+  EQ++ +L YHSEK+A+ 
Sbjct: 519 FIAGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKMAIV 578

Query: 643 FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           FG ++  D  P++I+++ RIC DCH   KL++   GR IV+RD  RFHHF+DG CSCGDY
Sbjct: 579 FGTMHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDY 638

Query: 703 W 703
           W
Sbjct: 639 W 639



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 164/337 (48%), Gaps = 39/337 (11%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           + R +EAL  F +     G    + T+ +++ AC    +   +  V +  +  G + D++
Sbjct: 149 DGRKQEALR-FLVAMRRDGVAPNAYTFSSVLGACT---TPGMLTAVHASTVKAGLDSDVF 204

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +R+ ++  +V+ G +   RR+FDEM  R+LV  N IIAG   SGD + A  LF+ + +  
Sbjct: 205 VRSSLIDAYVKLGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAG 264

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 T  +++RA  G+ ++  G+Q+H+  LK  +  ++ +  AL+DMY KCGS+EDA 
Sbjct: 265 FSSNQGTLTSVLRACTGMVMLEAGRQVHAHVLK--YDRDLILHNALLDMYCKCGSLEDAD 322

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +F  M ++  + W+T+++G A +G S EAL ++  M+  GV  +H T   ++  C+   
Sbjct: 323 ALFHRMPQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACS--- 379

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
                   HAGLV  G                 W      + +F     +     N ++ 
Sbjct: 380 --------HAGLVEDG-----------------WHYFRSMKRLFGIQPERE--HHNCMVD 412

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
             G  G+ +EAVE    M L    P+ V +  +L AC
Sbjct: 413 LLGRAGKLDEAVEFIHGMSLE---PDSVIWRTLLGAC 446



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 70/127 (55%), Gaps = 8/127 (6%)

Query: 329 KMDHFTFSMIIRICTRLASLEHAK------QAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           + D  + + ++++C R  + +H +      +AH  L   G G   V+NS L   Y+K+G 
Sbjct: 61  RADPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNS-LASMYAKFGL 119

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGN-HGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
           ++DA  +FD M  +NV++W  ++A   +  GR +EA+     M  +G+ PN  TF +VL 
Sbjct: 120 LDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLG 179

Query: 442 ACSRSGL 448
           AC+  G+
Sbjct: 180 ACTTPGM 186


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/565 (37%), Positives = 346/565 (61%), Gaps = 5/565 (0%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           R I +V  + + ++  G   D +M   +L    +C  +  A R+F      N+     +I
Sbjct: 50  RHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALI 109

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
            G + SG+YLEA  L+  +  E     +   A++++A      +  G+++HS ALK+GF 
Sbjct: 110 DGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFS 169

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSE----KTTVGWNTIIAGYALHGYSEEALDL 319
            N  V   ++++Y KCG + DA+ VF+EM E    K TV W  +I G+  +  +  AL+ 
Sbjct: 170 SNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEA 229

Query: 320 YYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379
           +  M+   V+ + FT   ++  C++L +LE  +  H+ + +    L++   +AL++ YS+
Sbjct: 230 FRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSR 289

Query: 380 WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
            G I++A+ VFD+M  ++VI++N +I+G   +G+  +A+ELF  M+   +RP +VTF+ V
Sbjct: 290 CGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGV 349

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499
           L+ACS  GL + G+EIF SM+RD++++P+  HY CM++LLGR G L+EA+ LIR      
Sbjct: 350 LNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTP 409

Query: 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
              M   LL+AC+++ NLELG+  A++L          YV+L ++Y SSGK KEAA+V  
Sbjct: 410 DHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRA 469

Query: 560 TLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKT 619
            ++  G++  P CS IEV  + H FL GD  H Q + IY K++ +   +   GY PE++ 
Sbjct: 470 KMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEV 529

Query: 620 LLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTG 678
           +L D+++ E+   L+ HSE+LA+ +GLI+T   T ++++++ R+C DCH+AIKLIA +T 
Sbjct: 530 VLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITR 589

Query: 679 REIVVRDASRFHHFKDGMCSCGDYW 703
           R+IVVRD +RFH+F++G CSCGDYW
Sbjct: 590 RKIVVRDRNRFHYFENGACSCGDYW 614



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 178/363 (49%), Gaps = 38/363 (10%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I+  V +  Y EA++L+  +  E      +    +++ AC    ++RE + V S  L  G
Sbjct: 109 IDGFVSSGNYLEAIQLYSRMLHESILP-DNYLMASILKACGSQLALREGREVHSRALKLG 167

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE----RNLVSCNMIIAGMIDSGDYLEAF 216
           F  +  +R R++ ++ +CG + DARR+F+EMPE    ++ V    +I G + + +   A 
Sbjct: 168 FSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRAL 227

Query: 217 LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276
             F  +  E       T   ++ A + L  + +G+ +HS   K     N+FV  ALI+MY
Sbjct: 228 EAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMY 287

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
           S+CGSI++AQ VFDEM ++  + +NT+I+G +++G S +A++L+  M    ++  + TF 
Sbjct: 288 SRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFV 347

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            ++  C+           H GLV  GF    + +S   D+     R+E            
Sbjct: 348 GVLNACS-----------HGGLVDFGFE---IFHSMARDY-----RVE-----------P 377

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
            +  +  ++   G  GR EEA +L   M    M P+H+    +LSAC      E G ++ 
Sbjct: 378 QIEHYGCMVDLLGRVGRLEEAYDLIRTM---KMTPDHIMLGTLLSACKMHKNLELGEQVA 434

Query: 457 QSM 459
           + +
Sbjct: 435 KEL 437



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 128/281 (45%), Gaps = 4/281 (1%)

Query: 85  LPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLR 144
           +P+  + K +    + I+  V N+    ALE F  ++ E        T   ++SAC  L 
Sbjct: 198 MPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGEN-VRPNEFTIVCVLSACSQLG 256

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           ++   + V SYM     E +L++ N ++ M+ RCG + +A+ +FDEM +R++++ N +I+
Sbjct: 257 ALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMIS 316

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL-HSCALKMGFG 263
           G+  +G   +A  LF  +        + TF  ++ A +   L+  G ++ HS A      
Sbjct: 317 GLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVE 376

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             +     ++D+  + G +E+A  +   M      +   T+++   +H   E    +  E
Sbjct: 377 PQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKE 436

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           + D G + D  T+ ++  +       + A Q  A +   G 
Sbjct: 437 LEDRG-QADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 476


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 200/514 (38%), Positives = 319/514 (62%), Gaps = 2/514 (0%)

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           M  R++ S   +IAG   +    EA  L L +          TFA++++A+       +G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           +Q+H+  +K  + D+V+V  AL+DMY++CG ++ A  VFD++  K  V WN +IAG+A  
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G  E  L ++ EM+ +G +  HFT+S +      + +LE  K  HA +++ G  L     
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVG 180

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           + ++D Y+K G + DAR VFD +  K++++WN+++  +  +G G EAV  FE+M   G+ 
Sbjct: 181 NTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVH 240

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
            N +TFL++L+ACS  GL + G + F  M ++H ++P   HY  +++LLGR GLL++A  
Sbjct: 241 LNQITFLSILTACSHGGLVKEGKQYFD-MMKEHNLEPEIDHYVTVVDLLGRAGLLNDALV 299

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
            I   P K T  +W ALL +CR++ N ++G+FAA+ ++ ++P+     V+L NIY S+G+
Sbjct: 300 FIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQ 359

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
              AA V + ++  G++  PACSW+E++   H+F++ D +H +++EIY+K + + ++I K
Sbjct: 360 WDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRK 419

Query: 611 HGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
            GYVP    +L  VDEQE Q  L YHSEK+A+AF LIN      ++I+++ RIC DCH+A
Sbjct: 420 AGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSA 479

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            + I+ V  REIVVRD +RFHHF  G CSCGDYW
Sbjct: 480 FRYISKVFEREIVVRDTNRFHHFSSGSCSCGDYW 513



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 141/282 (50%), Gaps = 1/282 (0%)

Query: 126 FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
           F     T+ +L+ A     S    +++ +  +   +  D+Y+ + +L M+ RCG M  A 
Sbjct: 37  FKPNGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAI 96

Query: 186 RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
            +FD++  +N VS N +IAG    GD     L+F ++     +    T++++  A AG+ 
Sbjct: 97  AVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIG 156

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
            +  GK +H+  +K G   + FV   ++DMY+K GS+ DA+ VFD + +K  V WN+++ 
Sbjct: 157 ALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLT 216

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
            +A +G   EA+  + EMR  GV ++  TF  I+  C+    ++  KQ    +  H    
Sbjct: 217 AFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEP 276

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WNALIA 406
           +I     +VD   + G + DA     KM  K   + W AL+ 
Sbjct: 277 EIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLG 318


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 346/577 (59%), Gaps = 10/577 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  ++ AC G       K++       GF  +++++N ++ M+ + G +  AR +FD++
Sbjct: 87  TFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKL 146

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELI 247
            +R +VS   II+G + +GD +EA    L++++E   C  +       +++ A   +E +
Sbjct: 147 HDRTVVSWTSIISGYVQNGDPMEA----LNVFKEMRQCNVKPDWIALVSVMTAYTNVEDL 202

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
             GK +H    K+G      +  +L  MY+K G +E A+  F+ M +   + WN +I+GY
Sbjct: 203 GQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGY 262

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           A +GY EEA+ L+ EM    +++D  T    +    ++ SLE A+     + +  +  D 
Sbjct: 263 ANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDT 322

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
             N+ L+D Y+K G I  AR VFD++  K+V+ W+ +I GYG HG G+EA+ L+ +M   
Sbjct: 323 FVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQA 382

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G+ PN  TF+ +L+AC  SGL + GWE+F  M  DH I+P   HY+C+++LLGR G L++
Sbjct: 383 GVCPNDGTFIGLLTACKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQ 441

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A+  I   P K   ++W ALL+AC+++  + LG+ AAE+L+ ++P    +YV L N+Y S
Sbjct: 442 AYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYAS 501

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
           +      A V   + +KGL      S IE+      F  GD+SH ++KEI+ ++DR+   
Sbjct: 502 AHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKR 561

Query: 608 ISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
           +   GYVP  +++L D++ +E +  L +HSE+LAVA+G+I+T+  T L+I ++ R C +C
Sbjct: 562 LKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINC 621

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           H+AIKLI+ +  REI++RDA RFHHFKDG+CSCGD+W
Sbjct: 622 HSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 133/295 (45%), Gaps = 45/295 (15%)

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
           F+    I+     G +  A   F E+SE   + WN II GY      +  + +Y +M+ S
Sbjct: 20  FLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQIS 79

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
            V  + FTF  +++ C   +     KQ H    ++GFG ++   ++LV  Y+K+G+I  A
Sbjct: 80  QVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYA 139

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS-- 444
           R VFDK+  + V+SW ++I+GY  +G   EA+ +F++M    ++P+ +  ++V++A +  
Sbjct: 140 RIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNV 199

Query: 445 ---------------------------------RSGLSERGWEIFQSMSRDHKIKPRAMH 471
                                            + GL E     F  M      KP  + 
Sbjct: 200 EDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-----KPNLIL 254

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTK----NMWAALLTACRVNGNLELGKF 522
           +  MI      G  +EA  L R    K  +     M +A+L + +V G+LEL ++
Sbjct: 255 WNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQV-GSLELARW 308



 Score = 44.3 bits (103), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 97/225 (43%), Gaps = 3/225 (1%)

Query: 88  TQMKKPSAGICSQIEKLVLNKRY-REALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
            +M+KP+  + + +     N  Y  EA++LF  +       V S T  + + A   + S+
Sbjct: 245 NRMEKPNLILWNAMISGYANNGYGEEAIKLFREM-ITKNIRVDSITMRSAVLASAQVGSL 303

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
              + +  Y+  + +  D ++   ++ M+ +CG +  AR +FD + ++++V  +++I G 
Sbjct: 304 ELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGY 363

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
              G   EA  L+ ++ +        TF  ++ A     L+  G +L       G   + 
Sbjct: 364 GLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHH 423

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALH 310
                ++D+  + G +  A      M  K  V  W  +++   +H
Sbjct: 424 QHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIH 468


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/535 (38%), Positives = 332/535 (62%), Gaps = 10/535 (1%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y+A I+ACI  R++ E ++V + M++  + P +++  R++ M+VRCG + DAR + D MP
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           ER++VS   +I+G   +  ++EA  LF+ +          T AT++ + +G + I  GKQ
Sbjct: 73  ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 132

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +HS  +K  F  ++FV  +L+DMY+K  +I++A+ VFD + E+  V    II+GYA  G 
Sbjct: 133 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGL 192

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            EEALDL+ ++   G++ +H TF+ ++   + LASL++ KQ HA ++R      +   ++
Sbjct: 193 DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS 252

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D YSK G++  +R VFD ML ++V+SWNA++ GYG HG G E + LF+  L   ++P+
Sbjct: 253 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKD-LHKEVKPD 311

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            VT LAVLS CS  GL + G +IF ++ ++        HY C+I+LLGR G L++A  LI
Sbjct: 312 SVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLI 371

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
              PF++T ++W +LL ACRV+ N+ +G+  A+KL  MEPE   NYV+L NIY ++G  K
Sbjct: 372 ENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWK 431

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
           +  +V + +  K +   P  SWI + K  H F S ++ H   K+I  K+  + ++I   G
Sbjct: 432 DVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAG 491

Query: 613 YVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTS--------DWTPLQIVQ 658
           +VP+   +L DV DEQ++R+L  HSEKLA+ FGL+NT         DW+ + ++Q
Sbjct: 492 FVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRTEDWSMIFLIQ 546



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 111/348 (31%), Positives = 174/348 (50%), Gaps = 28/348 (8%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
            +R+ EAL+LF I     G      T   ++++C G +SI + K+V S ++ T FE  ++
Sbjct: 89  TERHVEALDLF-IKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMF 147

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + + +L M+ +   + +ARR+FD +PER++VSC  II+G    G   EA  LF  L+ E 
Sbjct: 148 VGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEG 207

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
             C   TF T++ A +GL  +  GKQ+H+  L+      V +  +LIDMYSKCG +  ++
Sbjct: 208 MQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSR 267

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VFD M E++ V WN ++ GY  HG   E + L+ ++    VK D  T   ++  C+   
Sbjct: 268 RVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE-VKPDSVTLLAVLSGCS--- 323

Query: 347 SLEHAKQAHAGLVRHG---FGLDIVANSAL---------VDFYSKWGRIEDARHVFDKML 394
                   H GLV  G   F   +   SAL         +D   + GR+E A ++ + M 
Sbjct: 324 --------HGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMP 375

Query: 395 CKNVIS-WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            ++  S W +L+     H       EL  Q LL  M P +     +LS
Sbjct: 376 FESTPSIWGSLLGACRVHANVHVG-ELVAQKLLE-MEPENAGNYVILS 421


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/605 (37%), Positives = 346/605 (57%), Gaps = 38/605 (6%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           ++  AC     +   K++    +  GF  DL + N ++ M  +C  +  AR +FD+M  +
Sbjct: 82  SVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVK 141

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           ++VS   +    ++ G   +  LLF ++        S T ++++ A A  + I +G+++H
Sbjct: 142 DVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACA--DYIKLGREVH 199

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
              L+     NV+VS AL++MY+    ++ A+ VFD M  +  V WN ++  Y L+   E
Sbjct: 200 GFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYE 259

Query: 315 EALDLYYEMR-----------------------------------DSGVKMDHFTFSMII 339
             L L+++MR                                   DSG+K +  T    +
Sbjct: 260 RGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSAL 319

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
             CT L SL   K+ H  + RH F  D+   +ALV  Y+K G +E +RHVF+ M  K+V+
Sbjct: 320 PGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVV 379

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           +WN +I     HG+G E++ LF +ML +G+ PN VTF+ VLS CS S L++ G  +F SM
Sbjct: 380 AWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSM 439

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
           S +H I P A HY+CM+++L R G L+EA+  IR  P + T   W ALL ACRV  N+EL
Sbjct: 440 SSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYKNVEL 499

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
           G  AA +L+ +EP+   NYV+L NI  ++ K  EA+E+ + +R KGL   P  SW++VK 
Sbjct: 500 GTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQVKN 559

Query: 580 QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEK 638
           + + F++GD+S+ Q   IYR +D +  ++   GY P    +L +VD EQ +  L  HSE+
Sbjct: 560 KVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQEQREETLCSHSER 619

Query: 639 LAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCS 698
           LAVAFG++N+S  T +++ ++ RIC DCHNAIKLIA + G +I+VRD+ RFHHF+DG C+
Sbjct: 620 LAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFRDGYCT 679

Query: 699 CGDYW 703
           C D+W
Sbjct: 680 CNDFW 684



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 144/284 (50%), Gaps = 3/284 (1%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A  LFD++PE +L +  ++I+G    G   +A  ++  L             ++ +A A 
Sbjct: 30  ALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVAKACAA 89

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
              + V K++H  A++ GF  ++ +  ALIDM+ KC  +  A+ VFD+M  K  V W ++
Sbjct: 90  SGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSM 149

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
              Y   G   + + L+ EM  +G++ +  T S I+  C     L   ++ H  ++R+  
Sbjct: 150 TYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKL--GREVHGFILRNEM 207

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             ++  +SALV+ Y+    ++ AR VFD M  ++++SWN ++  Y  +   E  + LF Q
Sbjct: 208 EGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQ 267

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           M   G++ N  ++ A +S C ++G  E    I   M +D  IKP
Sbjct: 268 MRKEGIKLNQASWNAAISGCMQNGQHELALGILCKM-QDSGIKP 310



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 96/178 (53%), Gaps = 3/178 (1%)

Query: 270 CALIDMYSKC---GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
           C  I +   C   G ++ A  +FD++ E     W  +I+G+  HG+ ++A+D+Y  +   
Sbjct: 12  CQSIKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSR 71

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
            V+ D F    + + C     L  AK+ H   ++ GF  D+V  +AL+D + K   +  A
Sbjct: 72  NVRPDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGA 131

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           R VFD M+ K+V+SW ++   Y N G   + + LF +M LNG+R N +T  ++L AC+
Sbjct: 132 RCVFDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACA 189



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 42/67 (62%)

Query: 381 GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
           G ++ A ++FDK+   ++ +W  LI+G+  HG  ++A++++  +L   +RP+    L+V 
Sbjct: 25  GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVA 84

Query: 441 SACSRSG 447
            AC+ SG
Sbjct: 85  KACAASG 91


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/616 (35%), Positives = 348/616 (56%), Gaps = 40/616 (6%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI-- 182
           G    S T+  L  +C   ++  E K++ ++ L      + ++   V+ M+   G M   
Sbjct: 126 GVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFA 185

Query: 183 -----------------------------DARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
                                        DARRLFDE+P +++VS N +I+G + SG + 
Sbjct: 186 RLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFE 245

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA + F ++ E        T   ++ A        +GK + S     GFG N+ ++ ALI
Sbjct: 246 EAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALI 305

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           DMY KCG  + A+ +FD + EK  + WNT+I GY+     EEAL L+  M  S VK +  
Sbjct: 306 DMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDV 365

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN----SALVDFYSKWGRIEDARHV 389
           TF  I+  C  L +L+  K  HA + ++   L   +N    ++L+D Y+K G IE A  V
Sbjct: 366 TFLGILHACACLGALDLGKWVHAYIDKN---LRNSSNASLWTSLIDMYAKCGCIEAAERV 422

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM-RPNHVTFLAVLSACSRSGL 448
           F  M  +N+ SWNA+++G+  HG  E A+ LF +M+  G+ RP+ +TF+ VLSAC+++GL
Sbjct: 423 FRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGL 482

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
            + G + F+SM +D+ I P+  HY CMI+LL R    +EA  L++    +    +W +LL
Sbjct: 483 VDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLL 542

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
           +AC+ +G +E G++ AE+L+ +EPE    +V+L NIY  +G+  + A +   L  KG++ 
Sbjct: 543 SACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKK 602

Query: 569 LPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ- 627
           +P C+ IE+    H FL GD+ H +   IY+ ++ +   + ++G+VP    +L D+DE+ 
Sbjct: 603 VPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEEW 662

Query: 628 EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDAS 687
           ++  LS HSEKLA++FGLI T   T ++IV++ R+C +CH+A KLI+ +  REI+ RD +
Sbjct: 663 KEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRN 722

Query: 688 RFHHFKDGMCSCGDYW 703
           RFHHFKDG CSC D W
Sbjct: 723 RFHHFKDGFCSCNDCW 738



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/424 (27%), Positives = 201/424 (47%), Gaps = 44/424 (10%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV----RCGMMIDARRLF 188
           Y  L+  C   ++I   K++ S ++ TG    ++++++  L+H       G +  A  LF
Sbjct: 31  YLNLLEKC---KNINTFKQIHSLIIKTGLNNTVFVQSK--LIHFCAVSPSGDLSYALSLF 85

Query: 189 DEMPER---NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
           +E  +    N+   N +I G   S   L +  LF  +        S TF  + ++    +
Sbjct: 86  EENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAK 145

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS------------------------ 281
               GKQLH+ ALK+    N  V  ++I MY+  G                         
Sbjct: 146 ATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALIT 205

Query: 282 -------IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
                  ++DA+ +FDE+  K  V WN +I+GY   G  EEA+  +YEM+++ V  +  T
Sbjct: 206 GYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKST 265

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
             +++  C    S E  K   + +  +GFG ++   +AL+D Y K G  + AR +FD + 
Sbjct: 266 MVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIE 325

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
            K+VISWN +I GY      EEA+ LFE ML + ++PN VTFL +L AC+  G  + G  
Sbjct: 326 EKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKW 385

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
           +   + ++ +    A  +  +I++  + G ++ A  + R    +   + W A+L+   ++
Sbjct: 386 VHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLAS-WNAMLSGFAMH 444

Query: 515 GNLE 518
           G+ E
Sbjct: 445 GHAE 448



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 171/347 (49%), Gaps = 7/347 (2%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I   V + R+ EA+  F  ++ E       ST   ++SAC   RS    K + S++  
Sbjct: 233 AMISGYVQSGRFEEAIVCFYEMQ-EANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRD 291

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF  +L + N ++ M+ +CG    AR LFD + E++++S N +I G      Y EA  L
Sbjct: 292 NGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALAL 351

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSCALIDMYS 277
           F  +          TF  ++ A A L  + +GK +H+   K +    N  +  +LIDMY+
Sbjct: 352 FEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYA 411

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV-KMDHFTFS 336
           KCG IE A+ VF  M  +    WN +++G+A+HG++E AL L+ EM + G+ + D  TF 
Sbjct: 412 KCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFV 471

Query: 337 MIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-L 394
            ++  CT+   ++   Q    +++ +G    +     ++D  ++  + E+A  +   M +
Sbjct: 472 GVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEM 531

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
             +   W +L++    HGR E    + E++    + P +     +LS
Sbjct: 532 EPDGAIWGSLLSACKAHGRVEFGEYVAERLF--QLEPENAGAFVLLS 576



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 161/392 (41%), Gaps = 73/392 (18%)

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDM--YSKCGSIEDAQGVFDEMSEK---TTVGWN 301
           I+  KQ+HS  +K G  + VFV   LI     S  G +  A  +F+E  +        WN
Sbjct: 41  INTFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWN 100

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           ++I GY+L      +L L+  M   GV+ +  TF  + + CT+  +    KQ HA  ++ 
Sbjct: 101 SLIRGYSLSSSPLSSLHLFSRMLYYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKL 160

Query: 362 GFGL-------------------------------DIVANSALVDFYSKWGRIEDARHVF 390
                                              D V+ +AL+  Y   G ++DAR +F
Sbjct: 161 ALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLF 220

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
           D++  K+V+SWNA+I+GY   GR EEA+  F +M    + PN  T + VLSAC  +   E
Sbjct: 221 DEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGE 280

Query: 451 RGWEIFQSMSRDHKIKPRAMHYACMIEL--------LGRE-------------------- 482
            G  I  S  RD+           +I++        + RE                    
Sbjct: 281 LGKWI-GSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGY 339

Query: 483 ---GLLDEAFALIR---GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG--MEPEK 534
               L +EA AL      +  K     +  +L AC   G L+LGK+    +         
Sbjct: 340 SYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSN 399

Query: 535 LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
            S +  L+++Y   G ++ A  V R++  + L
Sbjct: 400 ASLWTSLIDMYAKCGCIEAAERVFRSMHSRNL 431


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/606 (37%), Positives = 362/606 (59%), Gaps = 20/606 (3%)

Query: 111 REALELFEILEFEGGF-DVGSSTYDALISAC---IGLRSIREVKRVFSYMLSTGFEPDLY 166
           + A +LF  LE    F D+   T   +I+AC   +GL     ++++ +  + TG +  + 
Sbjct: 122 QPAFQLF--LEMREAFLDMDGFTLSGIITACGINVGL-----IRQLHALSVVTGLDSYVS 174

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPE-RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
           + N ++  + + G + +ARR+F  + E R+ VS N ++   +   +  +A  L+L++   
Sbjct: 175 VGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVR 234

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS-IED 284
                  T A+++ A   ++ +  G Q H+  +K G+  N  V   LID+YSKCG  + D
Sbjct: 235 GLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLD 294

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALH-GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
            + VFDE+S    V WNT+I+GY+L+   S+EAL+ + +++  G + D  +   +I  C+
Sbjct: 295 CRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACS 354

Query: 344 RLASLEHAKQAHAGLVRHGFGLD-IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
            ++S    +Q H   ++     + I  N+AL+  YSK G + DA+ +FD M   N +S+N
Sbjct: 355 NMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYN 414

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           ++IAGY  HG G +++ LF++ML  G  P ++TF++VL+AC+ +G  E G   F  M + 
Sbjct: 415 SMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQK 474

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
             I+P A H++CMI+LLGR G L EA  LI   PF      W+ALL ACR++GN+EL   
Sbjct: 475 FGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIK 534

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPH 582
           AA +L  ++P   + YV+L NIY+ +G+L++AA V + +R +G++  P CSWIEV ++ H
Sbjct: 535 AANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIH 594

Query: 583 VFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-----QEQRVLSYHSE 637
           +F++ D  H   K+I   ++ MM +I K GY PE ++ L   D+     +E+  L +HSE
Sbjct: 595 IFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVGGDDRVWQREEELRLGHHSE 654

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLAV+FGL++T +  P+ + ++ RIC DCHNAIK I+ V  REI VRD+ RFH FKDG C
Sbjct: 655 KLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQC 714

Query: 698 SCGDYW 703
           SCG YW
Sbjct: 715 SCGGYW 720



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 137/503 (27%), Positives = 226/503 (44%), Gaps = 78/503 (15%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR----- 186
            +   +  CI  R +R  K + +  + +      Y+ N  LL++ +C  +  ARR     
Sbjct: 10  NFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 187 --------------------------LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
                                     LFDEMP+ + VS N +IA     GD   AF LFL
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFL 129

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVG--KQLHSCALKMGFGDNVFVSCALIDMYSK 278
           ++ E F D    T + +I A      I+VG  +QLH+ ++  G    V V  ALI  YSK
Sbjct: 130 EMREAFLDMDGFTLSGIITACG----INVGLIRQLHALSVVTGLDSYVSVGNALITSYSK 185

Query: 279 CGSIEDAQGVFDEMSE-KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
            G +++A+ +F  +SE +  V WN+++  Y  H    +AL+LY EM   G+ +D FT + 
Sbjct: 186 NGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLAS 245

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR-IEDARHVFDKMLCK 396
           ++   T +  L    Q HA L++ G+  +    S L+D YSK G  + D R VFD++   
Sbjct: 246 VLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNP 305

Query: 397 NVISWNALIAGYGNH-GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           +++ WN +I+GY  +    +EA+E F Q+ + G RP+  + + V+SACS      +G ++
Sbjct: 306 DLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQV 365

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP------------------- 496
                +      R      +I +  + G L +A  L    P                   
Sbjct: 366 HGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGM 425

Query: 497 ---------------FKTTKNMWAALLTACRVNGNLELGKF---AAEKLYGMEPEKLSNY 538
                          F  T   + ++L AC   G +E GK      ++ +G+EPE   ++
Sbjct: 426 GFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEA-GHF 484

Query: 539 VVLLNIYNSSGKLKEAAEVIRTL 561
             ++++   +GKL EA  +I T+
Sbjct: 485 SCMIDLLGRAGKLSEAERLIETI 507



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 45/238 (18%)

Query: 330 MDHFT-----FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           M HF+     F   ++ C     L   K  HA  ++         ++  +  YSK  R+ 
Sbjct: 1   MHHFSSLLHNFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLS 60

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            AR VFD     NV S+N LI+ Y      E A +LF++M     +P+ V++  +++A +
Sbjct: 61  AARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEM----PQPDSVSYNTLIAAYA 116

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD-EAFALIRGAPFKTTKNM 503
           R G ++  +++F  M                     RE  LD + F L            
Sbjct: 117 RRGDTQPAFQLFLEM---------------------REAFLDMDGFTL------------ 143

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            + ++TAC +N  L     A   + G++   +S    L+  Y+ +G LKEA  +   L
Sbjct: 144 -SGIITACGINVGLIRQLHALSVVTGLD-SYVSVGNALITSYSKNGFLKEARRIFHWL 199


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 346/577 (59%), Gaps = 10/577 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  ++ AC G       K++       GF  +++++N ++ M+ + G +  AR +FD++
Sbjct: 102 TFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKL 161

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELI 247
            +R +VS   II+G + +GD +EA    L++++E   C  +       +++ A   +E +
Sbjct: 162 HDRTVVSWTSIISGYVQNGDPMEA----LNVFKEMRQCNVKPDWIALVSVMTAYTNVEDL 217

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
             GK +H    K+G      +  +L  MY+K G +E A+  F+ M +   + WN +I+GY
Sbjct: 218 GQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGY 277

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           A +GY EEA+ L+ EM    +++D  T    +    ++ SLE A+     + +  +  D 
Sbjct: 278 ANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDT 337

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
             N+ L+D Y+K G I  AR VFD++  K+V+ W+ +I GYG HG G+EA+ L+ +M   
Sbjct: 338 FVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQA 397

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G+ PN  TF+ +L+AC  SGL + GWE+F  M  DH I+P   HY+C+++LLGR G L++
Sbjct: 398 GVCPNDGTFIGLLTACKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQ 456

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A+  I   P K   ++W ALL+AC+++  + LG+ AAE+L+ ++P    +YV L N+Y S
Sbjct: 457 AYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYAS 516

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
           +      A V   + +KGL      S IE+      F  GD+SH ++KEI+ ++DR+   
Sbjct: 517 AHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKR 576

Query: 608 ISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
           +   GYVP  +++L D++ +E +  L +HSE+LAVA+G+I+T+  T L+I ++ R C +C
Sbjct: 577 LKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINC 636

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           H+AIKLI+ +  REI++RDA RFHHFKDG+CSCGD+W
Sbjct: 637 HSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 133/295 (45%), Gaps = 45/295 (15%)

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
           F+    I+     G +  A   F E+SE   + WN II GY      +  + +Y +M+ S
Sbjct: 35  FLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQIS 94

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
            V  + FTF  +++ C   +     KQ H    ++GFG ++   ++LV  Y+K+G+I  A
Sbjct: 95  QVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYA 154

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS-- 444
           R VFDK+  + V+SW ++I+GY  +G   EA+ +F++M    ++P+ +  ++V++A +  
Sbjct: 155 RIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNV 214

Query: 445 ---------------------------------RSGLSERGWEIFQSMSRDHKIKPRAMH 471
                                            + GL E     F  M      KP  + 
Sbjct: 215 EDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRME-----KPNLIL 269

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTK----NMWAALLTACRVNGNLELGKF 522
           +  MI      G  +EA  L R    K  +     M +A+L + +V G+LEL ++
Sbjct: 270 WNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQV-GSLELARW 323



 Score = 44.3 bits (103), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 45/225 (20%), Positives = 97/225 (43%), Gaps = 3/225 (1%)

Query: 88  TQMKKPSAGICSQIEKLVLNKRY-REALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
            +M+KP+  + + +     N  Y  EA++LF  +       V S T  + + A   + S+
Sbjct: 260 NRMEKPNLILWNAMISGYANNGYGEEAIKLFREM-ITKNIRVDSITMRSAVLASAQVGSL 318

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
              + +  Y+  + +  D ++   ++ M+ +CG +  AR +FD + ++++V  +++I G 
Sbjct: 319 ELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGY 378

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
              G   EA  L+ ++ +        TF  ++ A     L+  G +L       G   + 
Sbjct: 379 GLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHH 438

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALH 310
                ++D+  + G +  A      M  K  V  W  +++   +H
Sbjct: 439 QHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIH 483



 Score = 42.7 bits (99), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 49/108 (45%)

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           L+H  Q +  L+  G           ++    +G +  A   F ++   +++ WNA+I G
Sbjct: 15  LKHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKG 74

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           Y      +  + ++  M ++ + PN  TFL VL AC  + +   G +I
Sbjct: 75  YTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQI 122


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/606 (35%), Positives = 355/606 (58%), Gaps = 38/606 (6%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA--RRLFDEMPE 193
           L+S   G   I +VK+V +++   G E   ++  ++L    +  + +D   R +F ++  
Sbjct: 42  LVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEY 101

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL 253
            N      +I G    G ++E+ LL+  +  +     S TF  +++A +    +++G+Q+
Sbjct: 102 PNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQV 161

Query: 254 HSCALKMG-FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA---- 308
           H+  + +G FG +++V   LIDMY KCG +     VFDEM ++  + W ++I  YA    
Sbjct: 162 HTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGN 221

Query: 309 ----------------------LHGYSE-----EALDLYYEMRDSGVKMDHFTFSMIIRI 341
                                 + GY++     EAL+++  M+ +GVK D  T   +I  
Sbjct: 222 MEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISA 281

Query: 342 CTRLASLEHAKQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
           C +L + ++A        + GFG   ++V  SAL+D Y+K G +EDA  VF++M  +NV 
Sbjct: 282 CAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVY 341

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           S++++I G+  HG    A+ELF++ML   ++PN VTF+ VL+ACS +G+ E+G ++F  M
Sbjct: 342 SYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMM 401

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
              H + P   HYACM++LLGR G L+EA  L++  P      +W ALL ACR++GN ++
Sbjct: 402 EECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDM 461

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
            + AA  L+ +EP  + NY++L NIY S+G+  + ++V + +R KGL+  P CSW+E KK
Sbjct: 462 AQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKK 521

Query: 580 Q-PHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSE 637
              H F +GD SH +++EI + ++ ++  +   GY P   ++  D+ DE+++R+L  HSE
Sbjct: 522 GIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSE 581

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+AFGL+ T+    ++IV++ RIC DCH+ +   + +TGREIVVRD  RFHHF+DG C
Sbjct: 582 KLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRC 641

Query: 698 SCGDYW 703
           SCG++W
Sbjct: 642 SCGNFW 647



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 106/229 (46%), Gaps = 8/229 (3%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP--D 164
           N R REALE+FE ++   G      T   +ISAC  L + +    V      +GF P  +
Sbjct: 250 NARPREALEVFERMQ-AAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSN 308

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           + + + ++ M+ +CG + DA ++F+ M ERN+ S + +I G    G    A  LF ++ +
Sbjct: 309 VVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLK 368

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM-GFGDNVFVSCALIDMYSKCGSIE 283
                   TF  ++ A +   ++  G+QL +   +  G   +      ++D+  + G +E
Sbjct: 369 TEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSEDHYACMVDLLGRAGRLE 428

Query: 284 DAQGVFDEMSEKTTVG-WNTIIAGYALHG---YSEEALDLYYEMRDSGV 328
           +A  +   M      G W  ++    +HG    ++ A    +E+  +G+
Sbjct: 429 EALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFELEPNGI 477


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/473 (41%), Positives = 305/473 (64%), Gaps = 6/473 (1%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T++T++ A  G+       ++H+ A+K  +  +  V  AL+D Y K G++++A  VF  +
Sbjct: 12  TYSTILTAQPGVSPF----EMHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASKVFQRI 67

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR-LASLEHA 351
            EK  V W+ +I GYA  G +E A+ ++ +M    +K + +TFS II  C    A +E  
Sbjct: 68  EEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTAGVEQG 127

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           KQ HA  ++  F   +  +SAL+  YSK G IE A  VF +   ++++SWN++I+GY  H
Sbjct: 128 KQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQH 187

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G G +A+E+FE+M    +  + VTF+ V+SAC+ +GL+  G   F  M +DH I+PR  H
Sbjct: 188 GYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEH 247

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           Y+CM++L GR G+L +A  +I   PF  + N+W  LL A  ++ NLE+GK AA+KL  ++
Sbjct: 248 YSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASCIHRNLEVGKLAADKLISLQ 307

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P+  ++YV+L N+Y S G  KE A+V + +  K ++ +   SWIEVK + + FL+GD SH
Sbjct: 308 PQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKVAGYSWIEVKNKTYTFLAGDVSH 367

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSD 650
             + +IY K++ +  ++   GY P+   +  DVDE+ ++ +LS HSE+LA+AFGLI T  
Sbjct: 368 PLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEHKEAILSQHSERLAIAFGLIGTPP 427

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            TPLQIV++ R+C DCH+ IKLI+++ GR+IVVRD++RFHHFK G+CSCGDYW
Sbjct: 428 GTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNRFHHFKGGLCSCGDYW 480



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 87/183 (47%), Gaps = 5/183 (2%)

Query: 132 TYDALISACIGLRS-IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           T+  +I+AC    + + + K++ ++ + + F   L + + +L M+ + G +  A  +F  
Sbjct: 109 TFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKR 168

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
             ER+LVS N II+G    G   +A  +F ++  +  +    TF  +I A     L + G
Sbjct: 169 QRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEG 228

Query: 251 KQLHSCALKMGFGDNVF--VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGY 307
           ++     +K    +      SC ++D+Y + G +  A  + +EM    +   W T++A  
Sbjct: 229 QRYFDIMVKDHHIEPRMEHYSC-MVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAAS 287

Query: 308 ALH 310
            +H
Sbjct: 288 CIH 290


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/561 (38%), Positives = 332/561 (59%), Gaps = 16/561 (2%)

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
           I E  R+F  M     E D+  R  ++  + + G +++AR LFDEMP RN+VS   +I G
Sbjct: 238 IDEACRLFDMMP----EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITG 293

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
            + +     A  LF    E   +    ++  M++        + G+   +  L       
Sbjct: 294 YVQNQQVDIARKLF----EVMPEKNEVSWTAMLKG-----YTNCGRLDEASELFNAMPIK 344

Query: 266 VFVSC-ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
             V+C A+I  + + G +  A+ VFD+M EK    W+ +I  Y   G   +AL+L+  M+
Sbjct: 345 SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQ 404

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
             G++ +  +   ++ +C  LA+L+H ++ HA LVR  F LD+   S L+  Y K G + 
Sbjct: 405 REGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLA 464

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            A+ VFD+   K+V+ WN++I GY  HG G EA+ +F  M  +G+ P+ VTF+ VLSACS
Sbjct: 465 KAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACS 524

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
            +G  ++G EIF SM   ++++ +  HYACM++LLGR G L+EA  LI   P +    +W
Sbjct: 525 YTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIW 584

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
            ALL ACR +  L+L + AA+KL  +EP+    +++L NIY S G+  + AE+ R +R +
Sbjct: 585 GALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDR 644

Query: 565 GLRMLPACSWIEVKKQPHVFLSGDQS-HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
            +   P CSWI V+K+ H F  GD S H +  EI R ++ +   + + GY P++  +L D
Sbjct: 645 RVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHD 704

Query: 624 VDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           VDE+E+ + L YHSEKLAVA+GL+      P++++++ R+C DCH AIKLIA VTGREI+
Sbjct: 705 VDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREII 764

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           +RDA+RFHHFKDG CSC DYW
Sbjct: 765 LRDANRFHHFKDGSCSCRDYW 785



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 207/467 (44%), Gaps = 59/467 (12%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           +++++++     +  +E + +F  M     E +    N ++  ++  GM+ +AR +FD M
Sbjct: 131 SWNSIVAGYFQNKRPQEAQNMFDKM----SERNTISWNGLVSGYINNGMINEAREVFDRM 186

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           PERN+VS   ++ G +  G   EA  LF  + E+       ++  M+       L+  G+
Sbjct: 187 PERNVVSWTAMVRGYVKEGMISEAETLFWQMPEK----NVVSWTVMLGG-----LLQEGR 237

Query: 252 QLHSCAL-KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
              +C L  M    +V     +I  Y + G + +A+ +FDEM  +  V W T+I GY  +
Sbjct: 238 IDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQN 297

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
              + A  L+  M +     +  +++ +++  T    L+ A +    +        +VA 
Sbjct: 298 QQVDIARKLFEVMPEK----NEVSWTAMLKGYTNCGRLDEASELFNAMPIKS----VVAC 349

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           +A++  + + G +  AR VFD+M  K+  +W+A+I  Y   G   +A+ELF  M   G+R
Sbjct: 350 NAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIR 409

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSR----------------------------- 461
           PN  + ++VLS C+     + G EI   + R                             
Sbjct: 410 PNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQV 469

Query: 462 -DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK---TTKNMWAALLTACRVNGNL 517
            D       + +  +I    + GL  EA  +     F         +  +L+AC   GN+
Sbjct: 470 FDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNV 529

Query: 518 ELGK---FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           + G     + E  Y +E +K+ +Y  ++++   +GKL EA ++I  +
Sbjct: 530 KKGLEIFNSMETKYQVE-QKIEHYACMVDLLGRAGKLNEAMDLIEKM 575



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 189/395 (47%), Gaps = 31/395 (7%)

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
           RN ++  + R G +  AR +FDEM ++N++S N I+AG   +    EA  +F    ++ S
Sbjct: 101 RNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMF----DKMS 156

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
           +  + ++  ++       +I+  +++     +     NV    A++  Y K G I +A+ 
Sbjct: 157 ERNTISWNGLVSGYINNGMINEAREVFDRMPER----NVVSWTAMVRGYVKEGMISEAET 212

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           +F +M EK  V W  ++ G    G  +EA  L+  M +     D  T + +I    ++  
Sbjct: 213 LFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK----DVVTRTNMIGGYCQVGR 268

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           L  A+     + R     ++V+ + ++  Y +  +++ AR +F+ M  KN +SW A++ G
Sbjct: 269 LVEARMLFDEMPRR----NVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKG 324

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           Y N GR +EA ELF  M +  +    V   A++    ++G   +  ++F  M    +   
Sbjct: 325 YTNCGRLDEASELFNAMPIKSV----VACNAMILCFGQNGEVPKARQVFDQMREKDE--- 377

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL---LTACRVNGNLELGKFAA 524
               ++ MI++  R+GL  +A  L R    +  +  + +L   L+ C    NL+ G+   
Sbjct: 378 --GTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIH 435

Query: 525 EKLYGMEPEKLSNYV--VLLNIYNSSGKLKEAAEV 557
            +L   + + L  YV  VLL++Y   G L +A +V
Sbjct: 436 AQLVRSQFD-LDVYVASVLLSMYIKCGNLAKAKQV 469



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 129/293 (44%), Gaps = 56/293 (19%)

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
           +LI  YS+ G IE A+ VFDEM +K  + WN+I+AGY  +   +EA +++ +M +     
Sbjct: 103 SLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER---- 158

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
                                              + ++ + LV  Y   G I +AR VF
Sbjct: 159 -----------------------------------NTISWNGLVSGYINNGMINEAREVF 183

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
           D+M  +NV+SW A++ GY   G   EA  LF QM       N V++  +L    + G  +
Sbjct: 184 DRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM----PEKNVVSWTVMLGGLLQEGRID 239

Query: 451 RGWEIFQSM-SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509
               +F  M  +D   +   +   C +      G L EA  L    P +   + W  ++T
Sbjct: 240 EACRLFDMMPEKDVVTRTNMIGGYCQV------GRLVEARMLFDEMPRRNVVS-WTTMIT 292

Query: 510 ACRVNGNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTL 561
               N  +++    A KL+ + PEK   ++  +L  Y + G+L EA+E+   +
Sbjct: 293 GYVQNQQVDI----ARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAM 341



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           I++ ++L+  YS+ G+IE AR VFD+M  KN+ISWN+++AGY  + R +EA  +F++M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM-- 155

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
                N +++  ++S    +G+     E+F  M   + +      +  M+    +EG++ 
Sbjct: 156 --SERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVS-----WTAMVRGYVKEGMIS 208

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIY 545
           EA  L    P K   + W  +L      G ++     A +L+ M PEK +     ++  Y
Sbjct: 209 EAETLFWQMPEKNVVS-WTVMLGGLLQEGRID----EACRLFDMMPEKDVVTRTNMIGGY 263

Query: 546 NSSGKLKEAAEVIRTLRRKGL 566
              G+L EA  +   + R+ +
Sbjct: 264 CQVGRLVEARMLFDEMPRRNV 284



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 110/227 (48%), Gaps = 8/227 (3%)

Query: 89  QMKKPSAGICSQIEKLVLNKRYR-EALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
           QM++   G  S + K+   K    +ALELF +++ EG       +  +++S C GL ++ 
Sbjct: 371 QMREKDEGTWSAMIKVYERKGLELDALELFRMMQREG-IRPNFPSLISVLSVCAGLANLD 429

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
             + + + ++ + F+ D+Y+ + +L M+++CG +  A+++FD    +++V  N II G  
Sbjct: 430 HGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYA 489

Query: 208 DSGDYLEAFLLFLDLWEEFSDC--GSRTFATMIRASAGLELISVGKQL-HSCALKMGFGD 264
             G  +EA  +F D+   FS       TF  ++ A +    +  G ++ +S   K     
Sbjct: 490 QHGLGVEALRVFHDM--HFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQ 547

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALH 310
            +     ++D+  + G + +A  + ++M  E   + W  ++     H
Sbjct: 548 KIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTH 594


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/561 (38%), Positives = 332/561 (59%), Gaps = 16/561 (2%)

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
           I E  R+F  M     E D+  R  ++  + + G +++AR LFDEMP RN+VS   +I G
Sbjct: 238 IDEACRLFDMMP----EKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITG 293

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
            + +     A  LF    E   +    ++  M++        + G+   +  L       
Sbjct: 294 YVQNQQVDIARKLF----EVMPEKNEVSWTAMLKG-----YTNCGRLDEASELFNAMPIK 344

Query: 266 VFVSC-ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
             V+C A+I  + + G +  A+ VFD+M EK    W+ +I  Y   G   +AL+L+  M+
Sbjct: 345 SVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQ 404

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
             G++ +  +   ++ +C  LA+L+H ++ HA LVR  F LD+   S L+  Y K G + 
Sbjct: 405 REGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLA 464

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            A+ VFD+   K+V+ WN++I GY  HG G EA+ +F  M  +G+ P+ VTF+ VLSACS
Sbjct: 465 KAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACS 524

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
            +G  ++G EIF SM   ++++ +  HYACM++LLGR G L+EA  LI   P +    +W
Sbjct: 525 YTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIW 584

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
            ALL ACR +  L+L + AA+KL  +EP+    +++L NIY S G+  + AE+ R +R +
Sbjct: 585 GALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDR 644

Query: 565 GLRMLPACSWIEVKKQPHVFLSGDQS-HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
            +   P CSWI V+K+ H F  GD S H +  EI R ++ +   + + GY P++  +L D
Sbjct: 645 RVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQSFVLHD 704

Query: 624 VDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           VDE+E+ + L YHSEKLAVA+GL+      P++++++ R+C DCH AIKLIA VTGREI+
Sbjct: 705 VDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVTGREII 764

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           +RDA+RFHHFKDG CSC DYW
Sbjct: 765 LRDANRFHHFKDGSCSCRDYW 785



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 109/467 (23%), Positives = 207/467 (44%), Gaps = 59/467 (12%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           +++++++     +  +E + +F  M     E +    N ++  ++  GM+ +AR +FD M
Sbjct: 131 SWNSIVAGYFQNKRPQEAQNMFDKM----SERNTISWNGLVSGYINNGMINEAREVFDRM 186

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           PERN+VS   ++ G +  G   EA  LF  + E+       ++  M+       L+  G+
Sbjct: 187 PERNVVSWTAMVRGYVKEGMISEAETLFWQMPEK----NVVSWTVMLGG-----LLQEGR 237

Query: 252 QLHSCAL-KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
              +C L  M    +V     +I  Y + G + +A+ +FDEM  +  V W T+I GY  +
Sbjct: 238 IDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQN 297

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
              + A  L+  M +     +  +++ +++  T    L+ A +    +        +VA 
Sbjct: 298 QQVDIARKLFEVMPEK----NEVSWTAMLKGYTNCGRLDEASELFNAMPIKS----VVAC 349

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           +A++  + + G +  AR VFD+M  K+  +W+A+I  Y   G   +A+ELF  M   G+R
Sbjct: 350 NAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIR 409

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSR----------------------------- 461
           PN  + ++VLS C+     + G EI   + R                             
Sbjct: 410 PNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQV 469

Query: 462 -DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK---TTKNMWAALLTACRVNGNL 517
            D       + +  +I    + GL  EA  +     F         +  +L+AC   GN+
Sbjct: 470 FDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNV 529

Query: 518 ELGK---FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           + G     + E  Y +E +K+ +Y  ++++   +GKL EA ++I  +
Sbjct: 530 KKGLEIFNSMETKYQVE-QKIEHYACMVDLLGRAGKLNEAMDLIEKM 575



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 189/395 (47%), Gaps = 31/395 (7%)

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
           RN ++  + R G +  AR +FDEM ++N++S N I+AG   +    EA  +F    ++ S
Sbjct: 101 RNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMF----DKMS 156

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
           +  + ++  ++       +I+  +++     +     NV    A++  Y K G I +A+ 
Sbjct: 157 ERNTISWNGLVSGYINNGMINEAREVFDRMPER----NVVSWTAMVRGYVKEGMISEAET 212

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           +F +M EK  V W  ++ G    G  +EA  L+  M +     D  T + +I    ++  
Sbjct: 213 LFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEK----DVVTRTNMIGGYCQVGR 268

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           L  A+     + R     ++V+ + ++  Y +  +++ AR +F+ M  KN +SW A++ G
Sbjct: 269 LVEARMLFDEMPRR----NVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKG 324

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           Y N GR +EA ELF  M +  +    V   A++    ++G   +  ++F  M    +   
Sbjct: 325 YTNCGRLDEASELFNAMPIKSV----VACNAMILCFGQNGEVPKARQVFDQMREKDE--- 377

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL---LTACRVNGNLELGKFAA 524
               ++ MI++  R+GL  +A  L R    +  +  + +L   L+ C    NL+ G+   
Sbjct: 378 --GTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIH 435

Query: 525 EKLYGMEPEKLSNYV--VLLNIYNSSGKLKEAAEV 557
            +L   + + L  YV  VLL++Y   G L +A +V
Sbjct: 436 AQLVRSQFD-LDVYVASVLLSMYIKCGNLAKAKQV 469



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 129/293 (44%), Gaps = 56/293 (19%)

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
           +LI  YS+ G IE A+ VFDEM +K  + WN+I+AGY  +   +EA +++ +M +     
Sbjct: 103 SLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER---- 158

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
                                              + ++ + LV  Y   G I +AR VF
Sbjct: 159 -----------------------------------NTISWNGLVSGYINNGMINEAREVF 183

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
           D+M  +NV+SW A++ GY   G   EA  LF QM       N V++  +L    + G  +
Sbjct: 184 DRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM----PEKNVVSWTVMLGGLLQEGRID 239

Query: 451 RGWEIFQSM-SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509
               +F  M  +D   +   +   C +      G L EA  L    P +   + W  ++T
Sbjct: 240 EACRLFDMMPEKDVVTRTNMIGGYCQV------GRLVEARMLFDEMPRRNVVS-WTTMIT 292

Query: 510 ACRVNGNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTL 561
               N  +++    A KL+ + PEK   ++  +L  Y + G+L EA+E+   +
Sbjct: 293 GYVQNQQVDI----ARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAM 341



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 102/201 (50%), Gaps = 15/201 (7%)

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           I++ ++L+  YS+ G+IE AR VFD+M  KN+ISWN+++AGY  + R +EA  +F++M  
Sbjct: 98  IISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM-- 155

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
                N +++  ++S    +G+     E+F  M   + +      +  M+    +EG++ 
Sbjct: 156 --SERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVS-----WTAMVRGYVKEGMIS 208

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIY 545
           EA  L    P K   + W  +L      G ++     A +L+ M PEK +     ++  Y
Sbjct: 209 EAETLFWQMPEKNVVS-WTVMLGGLLQEGRID----EACRLFDMMPEKDVVTRTNMIGGY 263

Query: 546 NSSGKLKEAAEVIRTLRRKGL 566
              G+L EA  +   + R+ +
Sbjct: 264 CQVGRLVEARMLFDEMPRRNV 284



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 52/227 (22%), Positives = 110/227 (48%), Gaps = 8/227 (3%)

Query: 89  QMKKPSAGICSQIEKLVLNKRYR-EALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
           QM++   G  S + K+   K    +ALELF +++ EG       +  +++S C GL ++ 
Sbjct: 371 QMREKDEGTWSAMIKVYERKGLELDALELFRMMQREG-IRPNFPSLISVLSVCAGLANLD 429

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
             + + + ++ + F+ D+Y+ + +L M+++CG +  A+++FD    +++V  N II G  
Sbjct: 430 HGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYA 489

Query: 208 DSGDYLEAFLLFLDLWEEFSDC--GSRTFATMIRASAGLELISVGKQL-HSCALKMGFGD 264
             G  +EA  +F D+   FS       TF  ++ A +    +  G ++ +S   K     
Sbjct: 490 QHGLGVEALRVFHDM--HFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQ 547

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALH 310
            +     ++D+  + G + +A  + ++M  E   + W  ++     H
Sbjct: 548 KIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTH 594


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 241/712 (33%), Positives = 389/712 (54%), Gaps = 55/712 (7%)

Query: 19  SCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECCLMEQGLKPRPKPNKIYTE 78
           S + +CS   N +L GK + +   F L    W R+F       M   L       ++Y  
Sbjct: 191 SVAHACSNLINGLLLGKQVHA---FVLRNGDW-RTFTNNALVTMYAKL------GRVY-- 238

Query: 79  ELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALIS 138
             +  +L D    K      + I  L  N R+ EAL    ++  + G      T  +++ 
Sbjct: 239 --EAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVM-LQSGVRPNGVTLASVLP 295

Query: 139 ACIGLRSIREVKRVFSYML-STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLV 197
           AC  L  +   K + +++L +     + ++   ++ M+  C      R +FD M  R + 
Sbjct: 296 ACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIA 355

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSC 256
             N +IAG + +    EA  LF+++  E      S T ++++ A    E     + +HSC
Sbjct: 356 VWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSC 415

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
            +K GF  + +V  AL+DMYS+ G IE A+ +F  M+ K  V WNT+I GY + G  ++A
Sbjct: 416 VVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDA 475

Query: 317 LDLYYEM------------------RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
           L+L ++M                  ++  +K +  T   ++  C  LA+L   K+ HA  
Sbjct: 476 LNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYA 535

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
           V+     D+   SALVD Y+K G +  +R VF++M  +NVI+WN LI  YG HG+GEEA+
Sbjct: 536 VKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEAL 595

Query: 419 ELFEQMLLNG-----MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
           +LF +M+  G     +RPN VT++A+ ++ S SG+ + G  +F +M   H I+P + HYA
Sbjct: 596 KLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYA 655

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTK-NMWAALLTACRVNGNLELGKFAAEKLYGMEP 532
           C+++LLGR G ++EA+ LI+  P    K + W++LL AC+++ NLE+G+ AA+ L+ ++P
Sbjct: 656 CLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDP 715

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHV 592
             L         Y +   +     + R ++ KG+R  P CSWIE   + H FL+GD SH 
Sbjct: 716 NVLD--------YGTKQSM-----LGRKMKEKGVRKEPGCSWIEHGDEVHKFLAGDVSHP 762

Query: 593 QTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDW 651
           Q+KE++  ++ + L + K GYVP+   +L +V E+E+  +L  HSE+LA+AFGL+NTS  
Sbjct: 763 QSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEKETMLCGHSERLAIAFGLLNTSPG 822

Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T +++ ++ R+C DCH A K I+ +  REI++RD  RFHHF++G CSCGDYW
Sbjct: 823 TTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFHHFRNGTCSCGDYW 874



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/330 (32%), Positives = 173/330 (52%), Gaps = 14/330 (4%)

Query: 124 GGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183
            G    +  + A++ A  G++ +   K++ +++   G      + N ++ M+ +CG +  
Sbjct: 79  AGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDA 138

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           ARR+FDE+  R+ VS N +I       ++  A  LF  +  E  + G  +F  +  A A 
Sbjct: 139 ARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLE--NVGPTSFTLVSVAHAC 196

Query: 244 LELIS---VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW 300
             LI+   +GKQ+H+  L+ G     F + AL+ MY+K G + +A+ +FD   +K  V W
Sbjct: 197 SNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSW 255

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           NTII+  + +   EEAL   + M  SGV+ +  T + ++  C+ L  L   K+ HA ++ 
Sbjct: 256 NTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLM 315

Query: 361 HGFGLDIVANS----ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
           +    D++ NS    ALVD Y    + E  R VFD M  + +  WNA+IAGY  +    E
Sbjct: 316 NN---DLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYE 372

Query: 417 AVELFEQMLLN-GMRPNHVTFLAVLSACSR 445
           A+ELF +M+   G+ PN VT  +VL AC R
Sbjct: 373 AIELFVEMVFELGLSPNSVTLSSVLPACVR 402



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/232 (35%), Positives = 129/232 (55%), Gaps = 4/232 (1%)

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
           F  +++A+AG++ +++GKQLH+   K G      V  +L++MY KCG I+ A+ VFDE++
Sbjct: 88  FPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEIT 147

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS-LEHAK 352
            +  V WN++I         E A+ L+  M    V    FT   +   C+ L + L   K
Sbjct: 148 NRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGK 207

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           Q HA ++R+G       N+ALV  Y+K GR+ +A+ +FD    K+++SWN +I+    + 
Sbjct: 208 QVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQND 266

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI--FQSMSRD 462
           R EEA+     ML +G+RPN VT  +VL ACS   +   G EI  F  M+ D
Sbjct: 267 RFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNND 318



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 126/286 (44%), Gaps = 55/286 (19%)

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           +A+  Y  M  +GV  D+F F  +++    +  L   KQ HA + + G  L     ++LV
Sbjct: 68  QAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLV 127

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           + Y K G I+ AR VFD++  ++ +SWN++I         E AV LF  MLL  + P   
Sbjct: 128 NMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSF 187

Query: 435 TFLAVLSACSR--SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
           T ++V  ACS   +GL                             LLG++     AF L 
Sbjct: 188 TLVSVAHACSNLINGL-----------------------------LLGKQV---HAFVLR 215

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGK-FAAEKLYGMEPEK-LSNYVVLLNIYNSSGK 550
            G         W        V    +LG+ + A+ L+ +  +K L ++  +++  + + +
Sbjct: 216 NGD--------WRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDR 267

Query: 551 LKEAAEVIRTLRRKGLR--------MLPACSWIEV---KKQPHVFL 585
            +EA   +  + + G+R        +LPACS +E+    K+ H F+
Sbjct: 268 FEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFV 313


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/577 (36%), Positives = 336/577 (58%), Gaps = 9/577 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY  ++  C     I   +++ S  +  GF+ D+Y+   ++ M+ + G +  A+R+ D +
Sbjct: 347 TYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMI 406

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG----SRTFATMIRASAGLELI 247
            E+++VS   +IAG +      EA    L+ ++E   CG    +   A+ I A AG++ +
Sbjct: 407 EEKDVVSWTSMIAGYVQHEFCKEA----LETFKEMQACGIWPDNIGLASAISACAGIKAV 462

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
             G Q+H+     G+  +V +   L+ +Y++CG  ++A   F+ +  K  + WN +I+G+
Sbjct: 463 HQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGF 522

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           A  G  EEAL ++ +M  +G K + FTF   I     LA ++  KQ HA +++ G+  + 
Sbjct: 523 AQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSET 582

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
             ++AL+  Y K G IEDA+  F +M  +N +SWN +I     HGRG EA++LF+QM   
Sbjct: 583 EISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQ 642

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G++P+ VTF+ VL+ACS  GL E G   F+SMS +H I PR  HYAC++++LGR G LD 
Sbjct: 643 GLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDR 702

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A   +   P      +W  LL+AC+V+ NLE+G+FAA+ L  +EP   ++YV+L N Y  
Sbjct: 703 AKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAV 762

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
           +GK     ++ + ++ +G+R  P  SWIEVK   H F  GD+ H    +IY  +  +   
Sbjct: 763 TGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDR 822

Query: 608 ISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
           + K GY  E   L  + +++ +   ++ HSEKLAVAFGL++     PL+++++ R+C DC
Sbjct: 823 LYKIGYKQENYHLFHEKEKEGKDPTAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDC 882

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           H  +K  + V GREIV+RD  RFHHF +G CSCGDYW
Sbjct: 883 HTWMKFTSGVMGREIVLRDVYRFHHFNNGSCSCGDYW 919



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 127/447 (28%), Positives = 229/447 (51%), Gaps = 12/447 (2%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           AL +F+ ++  G     S T  +L++AC  +  +R+ K++ SY+L  G   D  M   +L
Sbjct: 228 ALGIFDEMQLSG-LSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLL 286

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            ++V+ G + +A ++FD     N+V  N+++       D  ++F +F  +          
Sbjct: 287 DLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKF 346

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T+  M+R       I +G+Q+HS  +K GF  +++VS  LIDMYSK G ++ AQ + D +
Sbjct: 347 TYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMI 406

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            EK  V W ++IAGY  H + +EAL+ + EM+  G+  D+   +  I  C  + ++    
Sbjct: 407 EEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGS 466

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           Q HA +   G+  D+   + LV  Y++ G  ++A   F+ +  K  I+WN LI+G+   G
Sbjct: 467 QIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSG 526

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
             EEA+++F +M   G + N  TF++ +SA +     ++G +I   + +        +  
Sbjct: 527 LYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISN 586

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKN---MWAALLTACRVNG-NLE-LGKFAAEKL 527
           A +I L G+ G +++A    +   F+ TK     W  ++T C  +G  LE L  F   K 
Sbjct: 587 A-LISLYGKCGSIEDA----KMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQ 641

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            G++P  ++ +V +L   +  G ++E 
Sbjct: 642 QGLKPSDVT-FVGVLTACSHVGLVEEG 667



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 193/389 (49%), Gaps = 12/389 (3%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +++SAC      +  + +   +   GF  + ++ N ++ +++RC     A R+F +M   
Sbjct: 148 SILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYC 207

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           + V+ N +I+G    G    A  +F ++        S T A+++ A + +  +  GKQLH
Sbjct: 208 DSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLH 267

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           S  LK G   +  +  +L+D+Y K G IE+A  +FD       V WN ++  Y       
Sbjct: 268 SYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLA 327

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           ++ D++Y M  +GV+ + FT+  ++R CT    +   +Q H+  +++GF  D+  +  L+
Sbjct: 328 KSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLI 387

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D YSK+G ++ A+ + D +  K+V+SW ++IAGY  H   +EA+E F++M   G+ P+++
Sbjct: 388 DMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNI 447

Query: 435 TFLAVLSACSRSGLSERGWEI-----FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
              + +SAC+      +G +I         S D  I      +  ++ L  R G+  EAF
Sbjct: 448 GLASAISACAGIKAVHQGSQIHARVYVSGYSADVSI------WNGLVYLYARCGISKEAF 501

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           +       K     W  L++    +G  E
Sbjct: 502 SSFEAIEHKEGIT-WNGLISGFAQSGLYE 529



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 183/362 (50%), Gaps = 2/362 (0%)

Query: 128 VGSSTYDALISACIGL-RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186
           +G+  +   + AC G  R    V  + +  +  G      + N ++ ++ + G +  ARR
Sbjct: 39  LGAVDFACALRACRGSGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARR 98

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           +F+E+  R+ VS   +++G   +G   EA  L+ ++            ++++ A    EL
Sbjct: 99  VFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTEL 158

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
             +G+ +H    K GF    FV  ALI +Y +C S   A  VF +M    +V +NT+I+G
Sbjct: 159 FQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISG 218

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           +A  G+ + AL ++ EM+ SG+  D  T + ++  C+ +  L   KQ H+ L++ G  LD
Sbjct: 219 HAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLD 278

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
            +   +L+D Y K G IE+A  +FD     NV+ WN ++  YG      ++ ++F +ML 
Sbjct: 279 YIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLA 338

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
            G+RPN  T+  +L  C+ +G    G +I  S++  +  +        +I++  + G LD
Sbjct: 339 AGVRPNKFTYPCMLRTCTHTGEIGLGEQI-HSLTIKNGFQSDMYVSGVLIDMYSKYGWLD 397

Query: 487 EA 488
           +A
Sbjct: 398 KA 399



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 160/326 (49%), Gaps = 13/326 (3%)

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL-ELISV 249
           M  R   S N  +AG +   D  +   LF     ++   G+  FA  +RA  G      +
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPL 60

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
             ++H+ A+  G      +   LID+Y+K G +  A+ VF+E+S +  V W  +++GYA 
Sbjct: 61  VPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQ 120

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +G  EEA+ LY EM  SGV    +  S I+  CT+    +  +  H  + + GF  +   
Sbjct: 121 NGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFV 180

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            +AL+  Y +      A  VF  ML  + +++N LI+G+   G G+ A+ +F++M L+G+
Sbjct: 181 GNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGL 240

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQ-----SMSRDHKIKPRAMHYACMIELLGREGL 484
            P+ VT  ++L+ACS  G   +G ++        MS D+ ++        +++L  + G 
Sbjct: 241 SPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIME------GSLLDLYVKSGD 294

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTA 510
           ++EA  +      +T   +W  +L A
Sbjct: 295 IEEALQIFDSGD-RTNVVLWNLMLVA 319


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/603 (36%), Positives = 355/603 (58%), Gaps = 8/603 (1%)

Query: 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP 163
           LVLN    EAL+LF          +  STY  +I  C  ++ +   +++ S +L  GF  
Sbjct: 281 LVLNGHDLEALQLFHDSRSSITM-LTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHS 339

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMP-ERNLVSCNMIIAGMIDSGDYLEAFLLFLDL 222
              +   ++  + + G + +A  +F  M   +N+VS   +I G I +GD   A  LF  +
Sbjct: 340 YGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRM 399

Query: 223 WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
            E+       T++T++ AS    + S+  Q+H+  +K  +     V  AL+  YSK  + 
Sbjct: 400 REDGVAPNDFTYSTILTAS----VASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNT 455

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           E+A  +F  + +K  V W+ ++  YA  G S+ A +++ +M   G+K + FT S +I  C
Sbjct: 456 EEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDAC 515

Query: 343 -TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
            +  A ++  +Q HA  ++H     +  +SALV  Y++ G IE A+ +F++   ++++SW
Sbjct: 516 ASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSW 575

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           N++++GY  HG  ++A+++F QM   G+  + VTFL+V+  C+ +GL E G   F SM+R
Sbjct: 576 NSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMAR 635

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           D+ I P   HYACM++L  R G LDEA +LI G  F     +W  LL AC+V+ N+ELGK
Sbjct: 636 DYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGK 695

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
            AAEKL  +EP   + YV+L NIY+++GK KE  EV + +  K ++    CSWI++K + 
Sbjct: 696 LAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKV 755

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLA 640
           H F++ D+SH  +++IY K+  M  ++ + GY P+    L +V +EQ++ +L+ HSE+LA
Sbjct: 756 HSFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEEQKEAMLAMHSERLA 815

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AFGLI T    PL I ++ R+C DCH  IK+++ +  REIV+RD SRFHHF  G+CSCG
Sbjct: 816 LAFGLIATPPGAPLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCG 875

Query: 701 DYW 703
           D+W
Sbjct: 876 DFW 878



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 164/280 (58%), Gaps = 1/280 (0%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D+ +   ++ M+++   ++D R++F+ MP+RN+V+   ++ G I  G   +   LF  + 
Sbjct: 138 DVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMR 197

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
            E     S TFA+++   A   ++ +G+++H+ ++K G    VFV  +L++MY+KCG +E
Sbjct: 198 AEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVE 257

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
           +A+ VF  M  +  V WNT++AG  L+G+  EAL L+++ R S   +   T++ +I++C 
Sbjct: 258 EARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCA 317

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-CKNVISWN 402
            +  L  A+Q H+ +++ GF       +AL+D YSK G++ +A  +F  M   +NV+SW 
Sbjct: 318 NIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWT 377

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           A+I G   +G    A  LF +M  +G+ PN  T+  +L+A
Sbjct: 378 AMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA 417



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 184/396 (46%), Gaps = 38/396 (9%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE-EFSDCGSRTFATMIRASA 242
           AR+ FDE+P RN +  +  +      G   +A   FLD+        G      +++   
Sbjct: 57  ARQAFDEIPHRNTL--DHALFDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGVLKVCG 114

Query: 243 GLELISVGKQLHSCALKMGF--GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW 300
            +    +GKQLH   ++ G   GD V V  +L+DMY K  S+ D + VF+ M ++  V W
Sbjct: 115 SVPDRVLGKQLHGLCIRCGHDRGD-VGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTW 173

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
            +++ GY   G   + ++L++ MR  GV  +  TF+ ++ +      ++  ++ HA  V+
Sbjct: 174 TSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVK 233

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
            G    +   ++L++ Y+K G +E+AR VF  M  ++++SWN L+AG   +G   EA++L
Sbjct: 234 FGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQL 293

Query: 421 FEQMLLNGMRPNHVTFLAVLSACS-----------RSGLSERGWEIFQSMSRDHKIKPRA 469
           F     +       T+  V+  C+            S + +RG+  + ++          
Sbjct: 294 FHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNV---------- 343

Query: 470 MHYACMIELLGREGLLDEA---FALIRGAPFKTTKNMWAALLTACRVNGNLELGK--FAA 524
                +++   + G L  A   F L+ G+    +   W A++  C  NG++ L    F+ 
Sbjct: 344 --MTALMDAYSKAGQLGNALDIFLLMSGSQNVVS---WTAMINGCIQNGDVPLAAALFSR 398

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560
            +  G+ P   + Y  +L    +S   +  A+VI+T
Sbjct: 399 MREDGVAPNDFT-YSTILTASVASLPPQIHAQVIKT 433


>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
          Length = 719

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/630 (36%), Positives = 350/630 (55%), Gaps = 69/630 (10%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EALELF  +++EG       T+ +++  C     + + K++ ++ + T F+ + ++   +
Sbjct: 121 EALELFWEMQYEGE-RPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGL 179

Query: 172 LLMHVRCGMMIDARRLFDEMPE-RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           + M+ +C  +++A  LF+  P+ RN V    ++ G   +GD  +A   F D+  E  +C 
Sbjct: 180 VDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECN 239

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             TF +++ A   +     G Q+H C ++ GFG NVFV  AL+DMYSKCG + +A+ + +
Sbjct: 240 QFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLE 299

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            M     V WN++I G    G  EEAL L+  M    +K+D FT+  ++           
Sbjct: 300 TMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSLV----------- 348

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
                              N+ALVD Y+K G  + A  VF+KM  K+VISW +L+ G  +
Sbjct: 349 -------------------NNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVH 389

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS--------------------- 449
           +G  EEA+ LF +M + G+ P+ +   AVLSA   S +S                     
Sbjct: 390 NGSYEEALRLFCEMRIMGIHPDQIVIAAVLSALDNSLVSMYAKCGCIEDANKVFDSMEIQ 449

Query: 450 ---------------ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
                           RG + FQSM   + IKP   HYACMI+LLGR G L EA  L+  
Sbjct: 450 DVITWTALIVGYAQNGRGRDYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQ 509

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
              +    +W ALL ACRV+GN+ELG+ AA  L+ +EP+    YV+L N+Y+++GK +EA
Sbjct: 510 MAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEA 569

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
           A+  R ++ +G+   P CSWIE+  + H F+S D+SH +T EIY KVD +M+ I + GYV
Sbjct: 570 AKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYV 629

Query: 615 PEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLI 673
           P+    L D+DE+ + + L+YHSEKLAVAFGL+      P++I ++ RIC DCH A+K +
Sbjct: 630 PDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYV 689

Query: 674 AMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + V  R +++RD++ FHHF++G CSC DYW
Sbjct: 690 SGVFHRHVILRDSNCFHHFREGACSCSDYW 719



 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 159/371 (42%), Gaps = 81/371 (21%)

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
            +I  Y+  G + +A+ +F E   ++ + W+++I+GY  +G   EAL+L++EM+  G + 
Sbjct: 77  TMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGERP 136

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
           + FT+  ++R+C+    LE  KQ HA  ++  F  +    + LVD Y+K   I +A ++F
Sbjct: 137 NQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLF 196

Query: 391 DKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC------ 443
           +    K N + W A++ GY  +G G +A+E F  M   G+  N  TF ++L+AC      
Sbjct: 197 ELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISAC 256

Query: 444 -----------------------------SRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474
                                        S+ G       + ++M  D  +   +M   C
Sbjct: 257 GFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGC 316

Query: 475 MIELLGRE-----------------------------------GLLDEAFALIRGAPFKT 499
           + + LG E                                   G  D AF +      K 
Sbjct: 317 VRQGLGEEALSLFRIMHLRHMKIDEFTYPSLVNNALVDMYAKRGYFDYAFDVFEKMTDKD 376

Query: 500 TKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVV-------LLNIYNSSGK 550
             + W +L+T C  NG+ E  L  F   ++ G+ P+++    V       L+++Y   G 
Sbjct: 377 VIS-WTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSALDNSLVSMYAKCGC 435

Query: 551 LKEAAEVIRTL 561
           +++A +V  ++
Sbjct: 436 IEDANKVFDSM 446


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/678 (32%), Positives = 370/678 (54%), Gaps = 66/678 (9%)

Query: 89   QMKKPSAGICSQIEKLVLN---KRYREALELFEILEFEGGFDVGSSTYDALISACIGLRS 145
            +M  P A + +  E ++LN   ++ ++ +ELF  ++F       ++T   ++ AC  + +
Sbjct: 734  EMPNPEALLWN--EAIILNLQSEKLQKGVELFRKMQF-SFLKAETATIVRVLQACGKMGA 790

Query: 146  IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
            +   K++  Y+   G + D+ + N ++ M+ + G +  ARR+FD M  RN  S N +I+ 
Sbjct: 791  LNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISS 850

Query: 206  MIDSGDYLEAFLLFLDL-----------WE------------------------EFSDCG 230
                G   +A+ LF +L           W                         E     
Sbjct: 851  YAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPN 910

Query: 231  SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
            S +  ++++A + L  +++GK+ H   L+ GF  +V+V  +LIDMY K  S+  AQ VFD
Sbjct: 911  SSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFD 970

Query: 291  EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII----------- 339
             M  +    WN++++GY+  G  E+AL L  +M   G+K D  T++ +I           
Sbjct: 971  NMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARK 1030

Query: 340  -------------RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
                         R C  L+ L+  K+ H   +R+GF  D+   +AL+D YSK   +++A
Sbjct: 1031 AFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNA 1090

Query: 387  RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
              VF ++  K + SWN +I G+   G G+EA+ +F +M   G+ P+ +TF A+LSAC  S
Sbjct: 1091 HKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNS 1150

Query: 447  GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
            GL   GW+ F SM  D++I PR  HY CM++LLGR G LDEA+ LI   P K    +W A
Sbjct: 1151 GLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGA 1210

Query: 507  LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
            LL +CR++ NL   + AA+ L+ +EP   +NY++++N+Y+   + ++   +   +   G+
Sbjct: 1211 LLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGV 1270

Query: 567  RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE 626
            R     SWI++ ++ HVF S ++ H    +IY ++ +++ E+ K GYVP+   +  ++DE
Sbjct: 1271 RNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDE 1330

Query: 627  QE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
             E Q++L  H+EKLA+ +GLI      P++++++ RIC DCH+A K I++V  RE+ +RD
Sbjct: 1331 VEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRD 1390

Query: 686  ASRFHHFKDGMCSCGDYW 703
              RFHHF++G CSC D+W
Sbjct: 1391 GVRFHHFREGKCSCNDFW 1408



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 134/548 (24%), Positives = 235/548 (42%), Gaps = 99/548 (18%)

Query: 113  ALELFEILEFEGG-FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
             LE+F+ L  +G  FD  S  Y   +  C  +  I     +   ++  GF+ D+Y+R  +
Sbjct: 658  VLEVFKELHGKGVVFD--SEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCAL 715

Query: 172  LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
            +  + RC  +  A ++F EMP    +  N  I   + S    +   LF  +   F    +
Sbjct: 716  MNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAET 775

Query: 232  RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
             T   +++A   +  ++  KQ+H    + G   +V +   LI MYSK G +E A+ VFD 
Sbjct: 776  ATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDS 835

Query: 292  MSEKTTVGWNTIIAGYA-----------------------------------LHGYSEEA 316
            M  + T  WN++I+ YA                                   LHGY EE 
Sbjct: 836  MENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEV 895

Query: 317  LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
            L++   M+  G K +  + + +++  + L  L   K+ H  ++R+GF  D+   ++L+D 
Sbjct: 896  LNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDM 955

Query: 377  YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
            Y K   +  A+ VFD M  +N+ +WN+L++GY   G  E+A+ L  QM   G++P+ VT+
Sbjct: 956  YVKNHSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTW 1015

Query: 437  LAVLS------------------------ACSRSGLSERGWEIF---------------- 456
              ++S                        AC+   L ++G EI                 
Sbjct: 1016 NGMISGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVAT 1075

Query: 457  ---------QSMSRDHKIKPRAMH-----YACMIELLGREGLLDEAFAL---IRGAPFKT 499
                      S+   HK+  R  +     + CMI      GL  EA ++   ++      
Sbjct: 1076 ALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGP 1135

Query: 500  TKNMWAALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
                + ALL+AC+ +G +  G    + +   Y + P +L +Y  ++++   +G L EA +
Sbjct: 1136 DAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVP-RLEHYCCMVDLLGRAGYLDEAWD 1194

Query: 557  VIRTLRRK 564
            +I T+  K
Sbjct: 1195 LIHTMPLK 1202


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/609 (36%), Positives = 342/609 (56%), Gaps = 6/609 (0%)

Query: 99  SQIEKLVLNKRYREAL-ELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           S I  L  N  +  AL E FE+     G      T+     A   LR     K++ +  +
Sbjct: 78  SLISGLAQNGHFSTALVEFFEMRR--EGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAV 135

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
             G   D+++      M+ +  +  DAR+LFDE+PERNL + N  I+  +  G   EA  
Sbjct: 136 KCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIE 195

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
            F++         S TF   + A +    +++G QLH   L+ GF  +V V   LID Y 
Sbjct: 196 AFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYG 255

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           KC  I  ++ +F EM  K  V W +++A Y  +   E+A  LY   R   V+   F  S 
Sbjct: 256 KCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISS 315

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           ++  C  +A LE  +  HA  V+      I   SALVD Y K G IED+   FD+M  KN
Sbjct: 316 VLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKN 375

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGM--RPNHVTFLAVLSACSRSGLSERGWEI 455
           +++ N+LI GY + G+ + A+ LFE+M   G    PN++TF+++LSACSR+G  E G +I
Sbjct: 376 LVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKI 435

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F SM   + I+P A HY+C++++LGR G+++ A+  I+  P + T ++W AL  ACR++G
Sbjct: 436 FDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHG 495

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575
             +LG  AAE L+ ++P+   N+V+L N + ++G+  EA  V   L+  G++     SWI
Sbjct: 496 KPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWI 555

Query: 576 EVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSY 634
            VK Q H F + D+SH+  KEI   + ++  E+   GY P+ K  L D++E+E+   +S+
Sbjct: 556 TVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSH 615

Query: 635 HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKD 694
           HSEKLA+AFGL++     P++I ++ RIC DCH+  K ++    REI+VRD +RFH FKD
Sbjct: 616 HSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKD 675

Query: 695 GMCSCGDYW 703
           G+CSC DYW
Sbjct: 676 GICSCKDYW 684



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 121/470 (25%), Positives = 214/470 (45%), Gaps = 50/470 (10%)

Query: 136 LISACIGLRSIREVKRVFSYMLST-GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           L+   I   S+R  + V + ++ T    P  ++ N ++ M+ +      AR +    P R
Sbjct: 12  LLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPAR 71

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           N+VS   +I+G+  +G +  A + F ++  E       TF    +A A L L   GKQ+H
Sbjct: 72  NVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIH 131

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           + A+K G   +VFV C+  DMY K    +DA+ +FDE+ E+    WN  I+     G   
Sbjct: 132 ALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPR 191

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EA++ + E R      +  TF   +  C+    L    Q H  ++R GF  D+   + L+
Sbjct: 192 EAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLI 251

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           DFY K  +I  +  +F +M  KN +SW +L+A Y  +   E+A  L+ +   + +  +  
Sbjct: 252 DFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDF 311

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP---RAMHY-ACMIELLGR--------- 481
              +VLSAC  +G++  G E+ +S+   H +K    R +   + ++++ G+         
Sbjct: 312 MISSVLSAC--AGMA--GLELGRSI-HAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQ 366

Query: 482 ----------------------EGLLDEAFALI-----RGAPFKTTKNMWAALLTACRVN 514
                                 +G +D A AL      RG         + +LL+AC   
Sbjct: 367 AFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRA 426

Query: 515 GNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           G +E G    + +   YG+EP    +Y  ++++   +G ++ A E I+ +
Sbjct: 427 GAVENGMKIFDSMRSTYGIEPGA-EHYSCIVDMLGRAGMVERAYEFIKKM 475


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/577 (36%), Positives = 343/577 (59%), Gaps = 8/577 (1%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           S++ ++I  C  L+ +R  +++   ++  GF  D  +R  +++ + +C  M+DA RLF E
Sbjct: 300 SSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKE 359

Query: 191 MP-ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
                N+VS   +I+G + +    EA  LF ++  +       T++ ++ A   L +IS 
Sbjct: 360 TGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTA---LPVIS- 415

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
             ++H+  +K  +  +  V  AL+D Y K G +++A  VF  +  K  V W+ ++AGYA 
Sbjct: 416 PSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQ 475

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT-RLASLEHAKQAHAGLVRHGFGLDIV 368
            G +E A+ ++ E+   GVK + FTFS I+ +C    AS+   KQ H   ++      + 
Sbjct: 476 AGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLC 535

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
            +SAL+  Y+K G IE A  VF +   K+++SWN++I+GY  HG+  +A+++F++M    
Sbjct: 536 VSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRK 595

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           ++ + VTF+ V +AC+ +GL E G + F  M RD KI P   H +CM++L  R G L++A
Sbjct: 596 VKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKA 655

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
             +I   P      +W  +L ACRV+   ELG+ AAEK+  M PE  + YV+L N+Y  S
Sbjct: 656 MKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAES 715

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           G  +E A+V + +  + ++  P  SWIEVK + + FL+GD+SH    +IY K++ +   +
Sbjct: 716 GDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRL 775

Query: 609 SKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
              GY P+   +L D+ DE ++ VL+ HSE+LA+AFGLI T   +PL I+++ R+C DCH
Sbjct: 776 KDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCH 835

Query: 668 NAIKLIAMVTGREIVVRDASRFHHF-KDGMCSCGDYW 703
             IKLIA +  REIVVRD++RFHHF  DG+CSCGD+W
Sbjct: 836 VVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 203/392 (51%), Gaps = 18/392 (4%)

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           GF  D+ +   ++  +++     D R +FDEM ERN+V+   +I+G   +    E   LF
Sbjct: 127 GFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLF 186

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
           + + +E +   S TFA  +   A   +   G Q+H+  +K G    + VS +LI++Y KC
Sbjct: 187 MRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKC 246

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           G++  A+ +FD+   K+ V WN++I+GYA +G   EAL ++Y MR + V++   +F+ II
Sbjct: 247 GNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASII 306

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNV 398
           ++C  L  L   +Q H  +V++GF  D    +AL+  YSK   + DA  +F +     NV
Sbjct: 307 KLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNV 366

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SW A+I+G+  +   EEAV LF +M   G+RPN  T+  +L+A      SE   ++ ++
Sbjct: 367 VSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKT 426

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
                     A     +++   + G +DEA  +  G   K     W+A+L      G  E
Sbjct: 427 NYERSSTVGTA-----LLDAYVKLGKVDEAAKVFSGIDNKDIV-AWSAMLAGYAQAGETE 480

Query: 519 LGKFAAEKLY------GMEPEKLSNYVVLLNI 544
               AA K++      G++P + + +  +LN+
Sbjct: 481 ----AAIKIFSELTKGGVKPNEFT-FSSILNV 507



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 110/379 (29%), Positives = 192/379 (50%), Gaps = 4/379 (1%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A  LFD+ P+R+  S   ++ G    G   EA  LFL++     +     F+++++ SA 
Sbjct: 50  AHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSAT 109

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L     G+QLH   +K GF D+V V  +L+D Y K  + +D + VFDEM E+  V W T+
Sbjct: 110 LCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTL 169

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I+GYA +  +EE L L+  M+D G + + FTF+  + +           Q H  +V++G 
Sbjct: 170 ISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGL 229

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
              I  +++L++ Y K G +  AR +FDK   K+V++WN++I+GY  +G   EA+ +F  
Sbjct: 230 DKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYS 289

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           M LN +R +  +F +++  C+         ++  S+ +   +  + +  A M+       
Sbjct: 290 MRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMA 349

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVL 541
           +LD A  L +   F      W A+++    N   E  +G F+  K  G+ P + + Y V+
Sbjct: 350 MLD-ALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFT-YSVI 407

Query: 542 LNIYNSSGKLKEAAEVIRT 560
           L         +  A+V++T
Sbjct: 408 LTALPVISPSEVHAQVVKT 426


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/609 (36%), Positives = 342/609 (56%), Gaps = 6/609 (0%)

Query: 99  SQIEKLVLNKRYREAL-ELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           S I  L  N  +  AL E FE+     G      T+     A   LR     K++ +  +
Sbjct: 28  SLISGLAQNGHFSTALVEFFEMRR--EGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAV 85

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
             G   D+++      M+ +  +  DAR+LFDE+PERNL + N  I+  +  G   EA  
Sbjct: 86  KCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIE 145

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
            F++         S TF   + A +    +++G QLH   L+ GF  +V V   LID Y 
Sbjct: 146 AFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYG 205

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           KC  I  ++ +F EM  K  V W +++A Y  +   E+A  LY   R   V+   F  S 
Sbjct: 206 KCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISS 265

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           ++  C  +A LE  +  HA  V+      I   SALVD Y K G IED+   FD+M  KN
Sbjct: 266 VLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKN 325

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGM--RPNHVTFLAVLSACSRSGLSERGWEI 455
           +++ N+LI GY + G+ + A+ LFE+M   G    PN++TF+++LSACSR+G  E G +I
Sbjct: 326 LVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKI 385

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F SM   + I+P A HY+C++++LGR G+++ A+  I+  P + T ++W AL  ACR++G
Sbjct: 386 FDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHG 445

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575
             +LG  AAE L+ ++P+   N+V+L N + ++G+  EA  V   L+  G++     SWI
Sbjct: 446 KPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWI 505

Query: 576 EVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSY 634
            VK Q H F + D+SH+  KEI   + ++  E+   GY P+ K  L D++E+E+   +S+
Sbjct: 506 TVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSH 565

Query: 635 HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKD 694
           HSEKLA+AFGL++     P++I ++ RIC DCH+  K ++    REI+VRD +RFH FKD
Sbjct: 566 HSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKD 625

Query: 695 GMCSCGDYW 703
           G+CSC DYW
Sbjct: 626 GICSCKDYW 634



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 183/421 (43%), Gaps = 49/421 (11%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           AR +    P RN+VS   +I+G+  +G +  A + F ++  E       TF    +A A 
Sbjct: 11  ARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVAS 70

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L L   GKQ+H+ A+K G   +VFV C+  DMY K    +DA+ +FDE+ E+    WN  
Sbjct: 71  LRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAF 130

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I+     G   EA++ + E R      +  TF   +  C+    L    Q H  ++R GF
Sbjct: 131 ISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGF 190

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             D+   + L+DFY K  +I  +  +F +M  KN +SW +L+A Y  +   E+A  L+ +
Sbjct: 191 DTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLR 250

Query: 424 MLLNGMRPNHVTFLAVLSACS-----------------------------------RSGL 448
              + +  +     +VLSAC+                                   + G 
Sbjct: 251 SRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGC 310

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI-----RGAPFKTTKNM 503
            E   + F  M   + +   +     +I     +G +D A AL      RG         
Sbjct: 311 IEDSEQAFDEMPEKNLVTRNS-----LIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMT 365

Query: 504 WAALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560
           + +LL+AC   G +E G    + +   YG+EP    +Y  ++++   +G ++ A E I+ 
Sbjct: 366 FVSLLSACSRAGAVENGMKIFDSMRSTYGIEP-GAEHYSCIVDMLGRAGMVERAYEFIKK 424

Query: 561 L 561
           +
Sbjct: 425 M 425



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 86/170 (50%)

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MYSK    E A+ V      +  V W ++I+G A +G+   AL  ++EMR  GV  + FT
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           F    +    L      KQ HA  V+ G  LD+    +  D Y K    +DAR +FD++ 
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 120

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            +N+ +WNA I+     GR  EA+E F +       PN +TF A L+ACS
Sbjct: 121 ERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACS 170



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 37/79 (46%)

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           YSK    E AR V      +NV+SW +LI+G   +G    A+  F +M   G+ PN  TF
Sbjct: 2   YSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTF 61

Query: 437 LAVLSACSRSGLSERGWEI 455
                A +   L   G +I
Sbjct: 62  PCAFKAVASLRLPVTGKQI 80


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/622 (35%), Positives = 357/622 (57%), Gaps = 9/622 (1%)

Query: 88  TQMKKPSAGICSQIEKLVLNKRYRE-----ALELFEILEFEGGFDVGSSTYDALISACIG 142
           T    PS+  C      +L  R R      AL +F  L      D  S+T+   ++AC  
Sbjct: 66  TLAASPSSRSCIPAWNALLAARSRAGSPGAALRVFRALPSSARPD--STTFTLALTACAR 123

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           L  +   + V     + G+  D+++ + +L ++ RCG M DA R+FD MP ++ V+ + +
Sbjct: 124 LGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTM 183

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           +AG + +G  +EA  ++  + E            +I+A        +G  +H   L+ G 
Sbjct: 184 VAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGM 243

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             +V ++ +L+DMY+K G  + A+ VF  M  +  V WN +I+G+A +G+++EALDL+ E
Sbjct: 244 RMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFRE 303

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M  SG++ D       +  C  +  L+  K  H  ++R       +  +A++D YSK G 
Sbjct: 304 MSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRR-LEFQCILGTAVLDMYSKCGS 362

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           +E AR +F+K+  ++++ WNA+IA  G HG G +A+ LF+++   G++P+H TF ++LSA
Sbjct: 363 LESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSA 422

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
            S SGL E G   F  M  +  I+P   H  C+++LL R GL++EA  ++     + T  
Sbjct: 423 LSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIP 482

Query: 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           +W ALL+ C  N  LELG+  A+K+   +PE +    ++ N+Y ++ K  +  E+ + ++
Sbjct: 483 IWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMK 542

Query: 563 RKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLP 622
             G + +P  S IEV    H F+  DQSH Q +EI + + ++  E+ K GYVP  + +  
Sbjct: 543 DSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVPRTEFVYH 602

Query: 623 DVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREI 681
           D+DE  ++++LSYHSE+LA+AFGL+NTS  T L I+++ R+C DCH+AIK I+ +  REI
Sbjct: 603 DLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREI 662

Query: 682 VVRDASRFHHFKDGMCSCGDYW 703
           VVRDA RFHHFKDG CSCGDYW
Sbjct: 663 VVRDAKRFHHFKDGACSCGDYW 684


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/606 (35%), Positives = 352/606 (58%), Gaps = 3/606 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N    + L+LFE +   G  +   +T  ++++ C     +   + +  Y + 
Sbjct: 221 SMISGYVSNGLSEKGLDLFEQMLLLG-INTDLATMVSVVAGCSNTGMLLLGRALHGYAIK 279

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
             F  +L + N +L M+ + G +  A ++F+ M ER++VS   +IAG    G    +  L
Sbjct: 280 ASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRL 339

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F ++ +E       T  T++ A A   L+  GK +H+   +     ++FVS AL+DMY+K
Sbjct: 340 FHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAK 399

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CGS+ DA  VF EM  K  V WNT+I GY+ +    EAL+L+ EM+ +  K +  T + I
Sbjct: 400 CGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACI 458

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C  LA+LE  ++ H  ++R+GF LD    +ALVD Y K G +  AR +FD +  K++
Sbjct: 459 LPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDL 518

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SW  +IAGYG HG G EA+  F +M  +G+ P+ V+F+++L ACS SGL + GW  F  
Sbjct: 519 VSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNM 578

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M  +  I+P++ HYAC+++LL R G L +A+  I+  P +    +W ALL  CR+  +++
Sbjct: 579 MRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVK 638

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           L +  AE ++ +EPE    YV+L NIY  + K +E  ++   + R+GLR  P CSWIE+K
Sbjct: 639 LAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIK 698

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSE 637
            + H+F++GD SH    +I   + +    + + G+ P+ +  L   D+ E+ + L  HSE
Sbjct: 699 GKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSE 758

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           K+A+AFG+++      +++ ++ R+C DCH   K ++ +  R+I++RD++RFHHFKDG C
Sbjct: 759 KIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSC 818

Query: 698 SCGDYW 703
           SC  +W
Sbjct: 819 SCRGHW 824



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 136/489 (27%), Positives = 237/489 (48%), Gaps = 55/489 (11%)

Query: 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186
           D+   TY +++  C  L+SI++ +R+ S + S   E D  + ++++ M+V CG + + RR
Sbjct: 98  DLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRR 157

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF--------------------------- 219
           +FD++    +   N+++ G    G++ E+  LF                           
Sbjct: 158 IFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVI 217

Query: 220 ------------------LDLWEEFSDCGSRT-FATMIRASAGLE---LISVGKQLHSCA 257
                             LDL+E+    G  T  ATM+   AG     ++ +G+ LH  A
Sbjct: 218 SWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYA 277

Query: 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL 317
           +K  FG  + ++  L+DMYSK G++  A  VF+ M E++ V W ++IAGYA  G S+ ++
Sbjct: 278 IKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSV 337

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
            L++EM   G+  D FT + I+  C     LE+ K  H  +  +    D+  ++AL+D Y
Sbjct: 338 RLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMY 397

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           +K G + DA  VF +M  K+++SWN +I GY  +    EA+ LF +M  N  +PN +T  
Sbjct: 398 AKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMA 456

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
            +L AC+     ERG EI   + R+     R +  A ++++  + G L  A  L    P 
Sbjct: 457 CILPACASLAALERGQEIHGHILRNGFSLDRHVANA-LVDMYLKCGALGLARLLFDMIPE 515

Query: 498 KTTKNMWAALLTACRVN--GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           K   + W  ++    ++  G+  +  F   +  G+EP+++S ++ +L   + SG L E  
Sbjct: 516 KDLVS-WTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVS-FISILYACSHSGLLDEGW 573

Query: 556 EVIRTLRRK 564
                +R  
Sbjct: 574 GFFNMMRNN 582



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 69/311 (22%), Positives = 134/311 (43%), Gaps = 57/311 (18%)

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           ++Y  C +I  +    + +  K T  +N  I  +   G    A++L  +     +++   
Sbjct: 46  NLYHSCATIGTSVLPSETIDCKIT-DYNIEICRFCELGNLRRAMELINQSPKPDLELR-- 102

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           T+  ++++C  L S++  ++ H+ +  +   +D V  S LV  Y   G + + R +FDK+
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKV 162

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR--------------PNHVTFLAV 439
             + V  WN L+ GY   G   E++ LF++M   G+R               + +++ ++
Sbjct: 163 ANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSM 222

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499
           +S    +GLSE+G ++F+ M                  LLG                  T
Sbjct: 223 ISGYVSNGLSEKGLDLFEQML-----------------LLG----------------INT 249

Query: 500 TKNMWAALLTACRVNGNLELGK----FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
                 +++  C   G L LG+    +A +  +G E   L+    LL++Y+ SG L  A 
Sbjct: 250 DLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKE---LTLNNCLLDMYSKSGNLNSAI 306

Query: 556 EVIRTLRRKGL 566
           +V  T+  + +
Sbjct: 307 QVFETMGERSV 317


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  404 bits (1038), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/578 (36%), Positives = 337/578 (58%), Gaps = 11/578 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY  L+  C     I   +++    + TGFE D+Y+   ++ M+ + G +  ARR+ + +
Sbjct: 347 TYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVL 406

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDL-----WEEFSDCGSRTFATMIRASAGLEL 246
             +++VS   +IAG +      EA   F D+     W +     +   A+ I A AG++ 
Sbjct: 407 EAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPD-----NIGLASAISACAGIKA 461

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           +  G+Q+HS     G+  +V +  AL+++Y++CG  ++A  +F+ +  K  + WN +++G
Sbjct: 462 MRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSG 521

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           +A  G  EEAL+++ +M  +GVK + FTF   I     LA ++  KQ HA +++ G   +
Sbjct: 522 FAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSE 581

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
               +AL+  Y K G IEDA+  F +M  +N +SWN +I     HG G EA++LF+QM  
Sbjct: 582 TEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQ 641

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
            G++PN VTF+ VL+ACS  GL E G   F+SMS +H I PR  HYAC++++LGR G LD
Sbjct: 642 EGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLD 701

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546
            A   +   P      +W  LL+ACRV+ N+E+G+ AA+ L  +EP   ++YV+L N Y 
Sbjct: 702 RARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYA 761

Query: 547 SSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMML 606
            +GK      V + ++ +G+R  P  SWIEVK   H F  GD+ H    +IY+ +  +  
Sbjct: 762 VTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDD 821

Query: 607 EISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCD 665
            ++K GY+     L  + +++++   ++ HSEKLAVAFGL++     PL+++++ R+C D
Sbjct: 822 RLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVCND 881

Query: 666 CHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           CH  +K  + V GREIV+RD  RFHHF +G CSCGD+W
Sbjct: 882 CHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDFW 919



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 195/393 (49%), Gaps = 20/393 (5%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +++SAC       + + V + +   G   +  + N ++ +++R G +  A R+F EMP  
Sbjct: 148 SVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYC 207

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLF----LDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           + V+ N +I+     G+   A  +F    L  W    DC   T A+++ A A +  ++ G
Sbjct: 208 DRVTFNTLISRHAQCGNGESALEIFEEMRLSGWT--PDC--VTIASLLAACASIGDLNKG 263

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           KQLHS  LK G   +  +  +L+D+Y KCG I +A  +F        V WN ++  Y   
Sbjct: 264 KQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQI 323

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
               ++ DL+ +M  +GV+ + FT+  ++R CT    +   +Q H   ++ GF  D+  +
Sbjct: 324 SDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMYVS 383

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
             L+D YSK+G ++ AR + + +  K+V+SW ++IAGY  H   +EA+E F+ M L G+ 
Sbjct: 384 GVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIW 443

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSM-----SRDHKIKPRAMHYACMIELLGREGLL 485
           P+++   + +SAC+      +G +I   +     S D  I      +  ++ L  R G  
Sbjct: 444 PDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSI------WNALVNLYARCGRS 497

Query: 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
            EAF+L      K  K  W  +++    +G  E
Sbjct: 498 KEAFSLFEAIEHK-DKITWNGMVSGFAQSGLYE 529



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 166/324 (51%), Gaps = 9/324 (2%)

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG----LEL 246
           M  R   S N  + G +   D  +   LF     +    GS  FA  +R   G      L
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPL 60

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           + V   +H+ A+  G G++      LID+Y+K G ++ A+ VF+++S +  V W  +++G
Sbjct: 61  VPV---IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSG 117

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           YA +G  EEA+ LY++M  SGV    +  S ++  CT+ A  E  +  HA + + G   +
Sbjct: 118 YARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSE 177

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
            V  +AL+  Y ++G +  A  VF +M   + +++N LI+ +   G GE A+E+FE+M L
Sbjct: 178 TVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRL 237

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
           +G  P+ VT  ++L+AC+  G   +G ++   + +   + P  +    +++L  + G++ 
Sbjct: 238 SGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKA-GMSPDYIIEGSLLDLYVKCGVIV 296

Query: 487 EAFALIRGAPFKTTKNMWAALLTA 510
           EA  + +    +T   +W  +L A
Sbjct: 297 EALEIFKSGD-RTNVVLWNLMLVA 319



 Score =  135 bits (340), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 174/362 (48%), Gaps = 2/362 (0%)

Query: 128 VGSSTYDALISACIG-LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186
           +GS  +   +  C G ++    V  + +  ++ G   D    N ++ ++ + G++  ARR
Sbjct: 39  LGSVDFACALRECRGSVKHWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARR 98

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           +F+++  R+ VS   +++G   +G   EA  L+  +            ++++ A     L
Sbjct: 99  VFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAAL 158

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
              G+ +H+   K G      V  ALI +Y + GS+  A+ VF EM     V +NT+I+ 
Sbjct: 159 FEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISR 218

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           +A  G  E AL+++ EMR SG   D  T + ++  C  +  L   KQ H+ L++ G   D
Sbjct: 219 HAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPD 278

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
            +   +L+D Y K G I +A  +F      NV+ WN ++  YG      ++ +LF QM+ 
Sbjct: 279 YIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVA 338

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
            G+RPN  T+  +L  C+ +G    G +I   +S     +        +I++  + G LD
Sbjct: 339 AGVRPNEFTYPCLLRTCTYAGEINLGEQI-HLLSIKTGFESDMYVSGVLIDMYSKYGWLD 397

Query: 487 EA 488
           +A
Sbjct: 398 KA 399



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 3/203 (1%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           Y EALE+F I  ++ G      T+ + ISA   L  I++ K++ + ++ TG   +  + N
Sbjct: 528 YEEALEVF-IKMYQAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVAN 586

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ ++ +CG + DA+  F EM ERN VS N II      G  LEA  LF  + +E    
Sbjct: 587 ALISLYGKCGSIEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKP 646

Query: 230 GSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
              TF  ++ A + + L+  G     S + + G          ++D+  + G ++ A+  
Sbjct: 647 NDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKF 706

Query: 289 FDEMS-EKTTVGWNTIIAGYALH 310
            +EM      + W T+++   +H
Sbjct: 707 VEEMPVSANAMVWRTLLSACRVH 729


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  404 bits (1038), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/575 (36%), Positives = 346/575 (60%), Gaps = 2/575 (0%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           S   ALI+A     SI   + +   ++ +      ++ ++++  +V  G   DA  LFDE
Sbjct: 39  SLVSALITAISTCSSISYCRALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDALELFDE 98

Query: 191 MPERNLVSCNMIIAGMIDSGDY-LEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
           +P+++LVS N +I+G     D  +   LLF   +E        T   ++ A AG+  + V
Sbjct: 99  LPDKDLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDV 158

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           GK +H  A+K G    V V  +LI++Y KCG +E A  +F+ MS ++ V WN+++A +  
Sbjct: 159 GKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVH 218

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G +E+ +  +  MR +G+  D  T   ++  C  L   + A+  H  ++  G   ++  
Sbjct: 219 MGLAEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYILNGGLDGNLAI 278

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            +AL+D Y+K G + D+  VF  M+  + ++W A+++ Y  HGRG EA+E FE M+  G+
Sbjct: 279 ATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGV 338

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
            P+HVTF  +LSACS SGL E G   F+ M   + ++ R  HY+CM++LLGR G L++A+
Sbjct: 339 VPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAY 398

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549
            LI+  P +    +W AL+ ACRV GN+ELGK  AE+L+ ++P    NY+ L N+Y+++G
Sbjct: 399 KLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPSDSRNYITLSNMYSAAG 458

Query: 550 KLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEIS 609
           + ++A++V   ++ + L   P CS+IE   + H F+ GDQSH  T++IY K++ ++ +  
Sbjct: 459 QWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQSHPDTEQIYNKLEELVRKNR 518

Query: 610 KHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHN 668
           + G+  + + +L DVDE+ ++ +++ HSEKLA+AFGL+ T+   PL I ++ RIC DCH 
Sbjct: 519 EVGFASKTEYVLHDVDEEVKEDLINKHSEKLAIAFGLLVTNAGMPLIITKNIRICGDCHG 578

Query: 669 AIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             KLI+++  R I++RD  RFHHF +G+CSCGDYW
Sbjct: 579 FAKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 143/308 (46%), Gaps = 2/308 (0%)

Query: 120 LEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG 179
           + FE G      T   ++SAC G+  +   K +    + +G   ++ + N ++ ++ +CG
Sbjct: 130 MRFEMGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCG 189

Query: 180 MMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIR 239
            +  A  LF+ M  ++LVS N ++A  +  G   +    F+ +     +    T  +++ 
Sbjct: 190 CLEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLLL 249

Query: 240 ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
           A   L +  + + +H   L  G   N+ ++ AL+D+Y+K G++ D+  VF  M     V 
Sbjct: 250 ACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVA 309

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           W  +++ YA+HG   EA++ +  M   GV  DH TF+ ++  C+    +E  K     + 
Sbjct: 310 WTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMY 369

Query: 360 R-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEA 417
             +G  L +   S +VD   + G + DA  +   M +  N   W ALI      G  E  
Sbjct: 370 EFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELG 429

Query: 418 VELFEQML 425
            E+ E++ 
Sbjct: 430 KEVAERLF 437



 Score = 39.3 bits (90), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 45/204 (22%), Positives = 89/204 (43%), Gaps = 10/204 (4%)

Query: 117 FEILEFEGGFDVGSSTYDALISAC--IGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLM 174
           + I+    G +   +T  +L+ AC  +G+R + E   V  Y+L+ G + +L +   +L +
Sbjct: 228 YFIMMRRAGINSDQATVVSLLLACENLGVRKLAEA--VHGYILNGGLDGNLAIATALLDL 285

Query: 175 HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF 234
           + + G + D+ ++F  M   + V+   +++     G   EA   F  +  E       TF
Sbjct: 286 YAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTF 345

Query: 235 ATMIRASAGLELISVGKQLHSCALKMGFGDNVFV---SCALIDMYSKCGSIEDAQGVFDE 291
             ++ A +   L+  GK       +  +G  + V   SC ++D+  + G + DA  +   
Sbjct: 346 THLLSACSHSGLVEEGKNYFKIMYEF-YGVELRVEHYSC-MVDLLGRSGHLNDAYKLIKS 403

Query: 292 MSEKTTVG-WNTIIAGYALHGYSE 314
           M  +   G W  +I    + G  E
Sbjct: 404 MPMEPNSGVWGALIGACRVRGNIE 427


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/609 (36%), Positives = 339/609 (55%), Gaps = 6/609 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFE-GGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           S +  L  N  +  AL  FE  E    G      T+  +  A   LR     K++ +  +
Sbjct: 78  SLVSGLAQNGHFSTAL--FEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAV 135

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
             G   D+++      M+ +  +  DAR+LFDE+PERNL + N  I+  +  G   EA  
Sbjct: 136 KCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPKEAIE 195

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
            F++         S TF   + A +   L+ +G Q+H    + GF  +V V   LID Y 
Sbjct: 196 AFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYG 255

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           KC  I  ++ +F EM  K  V W +++A Y  +   E+A  LY   R   V+   F  S 
Sbjct: 256 KCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDFMISS 315

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           ++  C  +A LE  +  HA  V+     +I   SALVD Y K G IED+   FD+M  KN
Sbjct: 316 VLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKN 375

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGM--RPNHVTFLAVLSACSRSGLSERGWEI 455
           +++ N+LI GY + G+ + A+ LFE M   G    PN++TF+++LSACSR+G  E G +I
Sbjct: 376 LVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKI 435

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F SM   + I+P A HY+C++++LGR G++++AF  I+  P K T ++W AL  ACR++G
Sbjct: 436 FDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHG 495

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575
              LG  AAE L+ ++P+   N+V+L N + ++G+  EA  V   ++  G++     SWI
Sbjct: 496 KPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWI 555

Query: 576 EVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSY 634
            VK Q H F + D+SH   KEI   + ++  ++   GY P+ K  L D++E+E+   +S+
Sbjct: 556 TVKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEEEKAAEVSH 615

Query: 635 HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKD 694
           HSEKLA+AFGL+      P++I ++ RIC DCH+  K ++    REI+VRD +RFH FKD
Sbjct: 616 HSEKLALAFGLVALPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKD 675

Query: 695 GMCSCGDYW 703
           G+CSC DYW
Sbjct: 676 GICSCKDYW 684



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 206/468 (44%), Gaps = 40/468 (8%)

Query: 136 LISACIGLRSIREVKRVFSYMLST-GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           L+   I   S+R  + V + ++ T    P  ++ N ++ M+ +      AR +    P R
Sbjct: 12  LLKNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPAR 71

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           N+VS   +++G+  +G +  A   F ++  E       TF  + +A A L L   GKQ+H
Sbjct: 72  NVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIH 131

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           + A+K G   +VFV C+  DMY K    +DA+ +FDE+ E+    WN  I+     G  +
Sbjct: 132 ALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPK 191

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EA++ + E R  G + +  TF   +  C+    L+   Q H  + R GF  D+   + L+
Sbjct: 192 EAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGLI 251

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           DFY K  +I  +  +F +M  KN +SW +L+A Y  +   E+A  L+ +     +  +  
Sbjct: 252 DFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSDF 311

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSR------------------------------DHK 464
              +VLSAC+     E G  I     +                              D  
Sbjct: 312 MISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSEQAFDEM 371

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALI-----RGAPFKTTKNMWAALLTACRVNGNLEL 519
            +   +    +I     +G +D A AL      RG         + +LL+AC   G +E 
Sbjct: 372 PEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGAVEN 431

Query: 520 GKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           G    + +   YG+EP    +Y  ++++   +G +++A E I+ +  K
Sbjct: 432 GMKIFDSMKSTYGIEPGA-EHYSCIVDMLGRAGMVEQAFEFIKKMPIK 478


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 192/474 (40%), Positives = 308/474 (64%), Gaps = 3/474 (0%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T+ T++        +  G+++HS     G   +V V  AL++MY KC S+E+A+  F+++
Sbjct: 12  TYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAFEKI 71

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS--GVKMDHFTFSMIIRICTRLASLEH 350
           S    V W+ ++A YA +G++  AL+LY EM  +  G+  +  TF  ++  C+ L +L  
Sbjct: 72  SRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGALAE 131

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            ++ HA +   GF  D+V  +ALV+FY + G + DA+ VFD M  ++VISW+++I+ +  
Sbjct: 132 GRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQ 191

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
            GR +EA+EL+ +ML  G  P+ + F++VL ACS SG+ E   + F+S+  D +++P   
Sbjct: 192 RGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLE 251

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HYACM+++LGR G L +A  L+R  PF     ++  +L+AC++  ++E G+ AAE ++ +
Sbjct: 252 HYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFEL 311

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           +PE  S Y+ L NIY+++ + K+AA + + +  +G++  P CSWIEV  + H F++GD+ 
Sbjct: 312 DPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKM 371

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTS 649
           H Q  EIY ++ R+  ++ + GY  + K +L DV+E E + +L YHSEKLA+AFGLI+T 
Sbjct: 372 HPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTP 431

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              PL+IV++ R+C DCH A K+I+ VTGREI+VRD +RFHHF DGMCSC DYW
Sbjct: 432 PGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFLDGMCSCNDYW 485



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 166/350 (47%), Gaps = 10/350 (2%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G +    TY  ++S      S+ E +RV S +   G E D+ +   ++ M+ +C  + +A
Sbjct: 5   GVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEA 64

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR--TFATMIRASA 242
           R  F+++   N+VS + ++A    +G    A  L+ ++            TF T++ A +
Sbjct: 65  RAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACS 124

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
            L  ++ G+++H+   + GF  ++ V  AL++ Y +CGS+ DA+ VFD M  +  + W++
Sbjct: 125 FLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSS 184

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I+ +A  G  +EA++LY+ M   G   D   F  ++  C+    +E +      +V   
Sbjct: 185 MISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDT 244

Query: 363 FGLDIVANSA-LVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAG---YGNHGRGEEA 417
                + + A +VD   + G++ DA  +   M      + +  +++    Y +  RGE A
Sbjct: 245 QVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAA 304

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
            E+  ++      P ++T   + SA  R   + R  ++ +   R  K KP
Sbjct: 305 AEVVFELDPENSSP-YITLANIYSAAKRPKDAARIRKLME--ERGIKKKP 351



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 86/188 (45%), Gaps = 2/188 (1%)

Query: 107 NKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           N   R ALEL+ E+     G      T+  L+ AC  L ++ E +++ + +   GF+ DL
Sbjct: 89  NGHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDL 148

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            + N ++  + RCG + DA+ +FD M  R+++S + +I+     G   EA  L+  +  E
Sbjct: 149 VVCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSE 208

Query: 226 FSDCGSRTFATMIRASAGLELISV-GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
            +      F +++ A +   ++   G    S          +     ++D+  + G + D
Sbjct: 209 GTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRD 268

Query: 285 AQGVFDEM 292
           A+ +   M
Sbjct: 269 AEDLLRLM 276


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/662 (34%), Positives = 369/662 (55%), Gaps = 74/662 (11%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISA-CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           A+ LF  ++ EG F     TY ++++   + +   ++  +  +  L +G      + N +
Sbjct: 132 AINLFCKMKHEG-FKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNAL 190

Query: 172 LLMHVRCG----MMIDARRLFDEMPERN-------------------------------- 195
           + ++ RC     ++  AR++FD++PE++                                
Sbjct: 191 VSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMK 250

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
           LV+ N +I+G ++ G Y EA  +   +     +    T+ ++IRA A   L+ +GKQ+H+
Sbjct: 251 LVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHA 310

Query: 256 CALKMGFGDNVF-VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY------- 307
             L+    D  F    +L+ +Y KCG   +A+ +F++M  K  V WN +++GY       
Sbjct: 311 YVLRRE--DFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIG 368

Query: 308 ------------------------ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
                                   A +G+ EE L L+  M+  G +   + FS  I+ C 
Sbjct: 369 EAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCA 428

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            L +  + +Q HA LV+ GF   + A +AL+  Y+K G +E+A+ VF  M C + +SWNA
Sbjct: 429 VLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNA 488

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           LIA  G HG G EAV+++E+ML  G+RP+ +TFL VL+ACS +GL ++G + F SM   +
Sbjct: 489 LIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVY 548

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
           +I P A HYA +I+LL R G   EA ++I   PFK T  +W ALL+ CRV+GN+ELG  A
Sbjct: 549 RIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIA 608

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
           A+KL+G+ PE    Y++L N+Y ++G+ +E A V + +R +G++   ACSWIE++ Q H 
Sbjct: 609 ADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHT 668

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV--DEQEQRVLSYHSEKLAV 641
           FL  D SH + + +Y+ +  +  E+ + GYVP+   +L DV  D  ++ +L+ HSEK+AV
Sbjct: 669 FLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAV 728

Query: 642 AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
           AFGL+     T ++I ++ R C DCHN  + ++ V  R+I++RD  RFHHF++G CSCG+
Sbjct: 729 AFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGN 788

Query: 702 YW 703
           +W
Sbjct: 789 FW 790



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 141/534 (26%), Positives = 244/534 (45%), Gaps = 106/534 (19%)

Query: 130 SSTYDALISACIGLR--SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL 187
           ++ Y A +  C+ LR  S++  + V   +++ GF+P  ++ NR++ ++ +   +  AR+L
Sbjct: 12  ANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQL 71

Query: 188 FDEMPE---------------------------------RNLVSCNMIIAGMIDSGDYLE 214
           FDE+ E                                 R+ V  N +I G   + D   
Sbjct: 72  FDEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYS 131

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK----QLHSCALKMGFGDNVFVSC 270
           A  LF  +  E       T+A+++   AGL L+   +    Q H+ ALK G G    VS 
Sbjct: 132 AINLFCKMKHEGFKPDDFTYASVL---AGLALVVDDEKQCVQFHAAALKSGAGYVTSVSN 188

Query: 271 ALIDMYSKCGS----IEDAQGVFDEMSEK-----TT------------------------ 297
           AL+ +YS+C S    +  A+ VFD++ EK     TT                        
Sbjct: 189 ALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDEN 248

Query: 298 ---VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
              V +N +I+GY   G  +EAL++   M  SG+++D FT+  +IR C     L+  KQ 
Sbjct: 249 MKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQV 308

Query: 355 HAGLVRH---GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           HA ++R     F  D    ++LV  Y K G+  +AR +F+KM  K+++SWNAL++GY + 
Sbjct: 309 HAYVLRREDFSFHFD----NSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSS 364

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G   EA  +F++M       N ++++ ++S  + +G  E G ++F  M R+   +P    
Sbjct: 365 GHIGEAKLIFKEM----KEKNILSWMIMISGLAENGFGEEGLKLFSCMKRE-GFEPCDYA 419

Query: 472 YACMIE---LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
           ++  I+   +LG      +  A +    F ++ +   AL+T     G +E     A++++
Sbjct: 420 FSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVE----EAQQVF 475

Query: 529 GMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR--------MLPACS 573
              P   S ++  L+      G   EA +V   + +KG+R        +L ACS
Sbjct: 476 RTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACS 529



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 177/359 (49%), Gaps = 41/359 (11%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           Y+EALE+   +    G ++   TY ++I AC   R ++  K+V +Y+L    +   +  N
Sbjct: 267 YQEALEMVRRM-VSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRRE-DFSFHFDN 324

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE---- 225
            ++ ++ +CG   +AR +F++MP ++LVS N +++G + SG   EA L+F ++ E+    
Sbjct: 325 SLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILS 384

Query: 226 ------------FSDCGSRTFATM---------------IRASAGLELISVGKQLHSCAL 258
                       F + G + F+ M               I++ A L     G+Q H+  +
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLV 444

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
           K+GF  ++    ALI MY+KCG +E+AQ VF  M    +V WN +IA    HG+  EA+D
Sbjct: 445 KIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVD 504

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ---AHAGLVRHGFGLDIVANSALVD 375
           +Y EM   G++ D  TF  ++  C+    ++  ++   +   + R   G D  A   L+D
Sbjct: 505 VYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYAR--LID 562

Query: 376 FYSKWGRIEDARHVFDKMLCKNVIS-WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
              + G+  +A  + + +  K     W AL++G   HG  E  +   +++   G+ P H
Sbjct: 563 LLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLF--GLIPEH 619


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/579 (36%), Positives = 339/579 (58%), Gaps = 7/579 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+   + AC  L  +    ++    + +GFE    + N  + M+ +CG +  A ++F++M
Sbjct: 107 TFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKM 166

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P RNLVS N +IAG    G+  ++ +LF  +  +       TF + ++A   L  I  G 
Sbjct: 167 PFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGT 226

Query: 252 QLHSCALKMGFGDNV--FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           Q+H+  +  GF  ++   ++ A++D+Y+KCG + +AQ VFD + +K  + W+ +I G+A 
Sbjct: 227 QIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQ 286

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G   EA+DL+ ++R+S   +D F  S+++ +   LA +E  KQ H  +++   GLDI  
Sbjct: 287 EGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISV 346

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            ++++D Y K G  E+A  +F +M  +NV+SW  +I GYG HG GE+A+ LF +M L+G+
Sbjct: 347 ANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGI 406

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
             + V +LA+LSACS SGL     E F  +  +H++KP   HYACM+++LGR G L EA 
Sbjct: 407 ELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAK 466

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549
            LI     K  + +W  LL+ACRV+GNLE+G+   E L+ M+ +   NYV++ NIY  +G
Sbjct: 467 NLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAG 526

Query: 550 KLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEIS 609
             KE   V + ++ KGL+     SW+E+ K+ H F  GD +H  T++I+  +  M   + 
Sbjct: 527 YWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTEKIHEMLKEMERRVK 586

Query: 610 KH-GYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLI---NTSDWTPLQIVQSHRICC 664
           +  GY    +  L DV+E+ ++  L  HSEKLA+   L+          +++ ++ R+C 
Sbjct: 587 EEVGYAYGLRFALHDVEEESKEENLRVHSEKLAIGLALVCDGMEKKGGVIRVFKNLRVCG 646

Query: 665 DCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           DCH  IK ++ +  +  VVRDA+RFH F+DG+CSCGDYW
Sbjct: 647 DCHEFIKGLSKILKKVFVVRDANRFHRFEDGLCSCGDYW 685



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 107/307 (34%), Positives = 163/307 (53%), Gaps = 6/307 (1%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           +  A ++R  +   L   G Q+H+ A+ MGFG ++ ++  LIDMY KC  ++ A  VFD 
Sbjct: 5   QRLAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDR 64

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M E+  V W  ++ GY   G ++ +L L  EM  SGVK + FTFS  ++ C  L  +E+ 
Sbjct: 65  MLERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENG 124

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
            Q H   V+ GF    V  +A +D YSK GRI  A  VF+KM  +N++SWNA+IAG+ + 
Sbjct: 125 MQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHE 184

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM-SRDHKIKPRAM 470
           G G +++ LF++M   G  P+  TF + L AC   G    G +I  S+ +R   I  R +
Sbjct: 185 GNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNI 244

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
             + +++L  + G L EA  +      K   + W+AL+      GNL      A  L+  
Sbjct: 245 IASAIVDLYAKCGYLFEAQKVFDRIEQKNLIS-WSALIQGFAQEGNL----LEAMDLFRQ 299

Query: 531 EPEKLSN 537
             E +SN
Sbjct: 300 LRESVSN 306


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/537 (39%), Positives = 322/537 (59%), Gaps = 30/537 (5%)

Query: 179 GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMI 238
           G + +AR +FDEMP+RN+V+   +I+G   +     A  LF    E   D    T+  M+
Sbjct: 185 GRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDVARKLF----EVMPDKNEVTWTAML 240

Query: 239 -------RASAGLELISVG--KQLHSC-ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
                  R +   EL      K + +C  + MGFG N              G +  A+ V
Sbjct: 241 KGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLN--------------GEVGKARWV 286

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD+M EK    W+ +I  Y   G+  EAL L+  M+  GV+ +  +   I+ +C  LASL
Sbjct: 287 FDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASL 346

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
           +H +Q H+ LVR  F LDI  +S L+  Y K G +   + VFD+   K+++ WN++IAGY
Sbjct: 347 DHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGY 406

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
             HG GE+A+E+F +M  +G  P+ +TF+ VLSAC  +G  + G EIF+SM   +++  +
Sbjct: 407 AQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQK 466

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
             HYACM++LLGR G L+EA  LI   P +    +W ALL+ACR + NL+L + AA+KL 
Sbjct: 467 TEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLL 526

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL-SG 587
            +EP     Y++L N+Y S  + K+ AE+ +T+R + +   P CSWIEV  + H+F   G
Sbjct: 527 QLEPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGG 586

Query: 588 DQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLI 646
             SH + + I +K++++   + + GY P+   ++ DVDE+++   L +HSEK+AVA+GL+
Sbjct: 587 SASHPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLL 646

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
                 P++++++ R+C DCH+AIKLIA VTGREI++RDA+RFHHFKDG+CSC D+W
Sbjct: 647 KVPVGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 207/440 (47%), Gaps = 33/440 (7%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           ++++A+++     +   E +++F  M     E +    N ++  +V+ GM+ +AR++FD+
Sbjct: 48  TSWNAIVAGYFHNKRPAEAQKLFDKMP----ERNTISWNGLVSGYVKNGMISEARKVFDK 103

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           MPERN+VS   ++ G +  G   EA LLF  + E+       ++  M+       LI  G
Sbjct: 104 MPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEK----NVVSWTVMLGG-----LIEDG 154

Query: 251 KQLHSCAL-KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           +   +  L  M    +V  S  +I      G + +A+ +FDEM ++  V W ++I+GYA+
Sbjct: 155 RVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAM 214

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +   + A  L+  M D     +  T++ +++  TR   +  A +    +        + A
Sbjct: 215 NNKVDVARKLFEVMPDK----NEVTWTAMLKGYTRSGRINEAAELFKAMPVK----PVAA 266

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            + ++  +   G +  AR VFD+M  K+  +W+ALI  Y   G   EA+ LF  M   G+
Sbjct: 267 CNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGV 326

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
           RPN  + +++LS C      + G ++   + R H         + +I +  + G L    
Sbjct: 327 RPNFPSIISILSVCGSLASLDHGRQVHSQLVRSH-FDLDIYVSSVLITMYIKCGDLVTGK 385

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY-----GMEPEKLSNYVVLLNI 544
            +      K    MW +++     +G    G+ A E  +     G  P++++ ++ +L+ 
Sbjct: 386 RVFDRFSSKDIV-MWNSIIAGYAQHG---FGEKALEVFHEMFSSGAAPDEIT-FIGVLSA 440

Query: 545 YNSSGKLKEAAEVIRTLRRK 564
              +GK+KE  E+  +++ K
Sbjct: 441 CGYTGKVKEGLEIFESMKSK 460



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 170/391 (43%), Gaps = 64/391 (16%)

Query: 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
           R G +  AR +FD++  + + S N I+AG   +    EA  LF  + E            
Sbjct: 28  RLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPER----------- 76

Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
                                       N      L+  Y K G I +A+ VFD+M E+ 
Sbjct: 77  ----------------------------NTISWNGLVSGYVKNGMISEARKVFDKMPERN 108

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
            V W +++ GY   G  +EA  L++ M +  V     ++++++        ++ A++   
Sbjct: 109 VVSWTSMVRGYVQEGLIDEAELLFWRMPEKNV----VSWTVMLGGLIEDGRVDEARRLFD 164

Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
            +       D+VA++ ++      GR+ +AR +FD+M  +NV++W ++I+GY  + + + 
Sbjct: 165 MIPVK----DVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVDV 220

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC-- 474
           A +LFE M       N VT+ A+L   +RSG      E+F++M     +KP A   AC  
Sbjct: 221 ARKLFEVM----PDKNEVTWTAMLKGYTRSGRINEAAELFKAMP----VKPVA---ACNG 269

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG-NLE-LGKFAAEKLYGMEP 532
           MI   G  G + +A  +      K     W+AL+      G  LE L  F+  +  G+ P
Sbjct: 270 MIMGFGLNGEVGKARWVFDQMKEK-DDGTWSALIKIYERKGFELEALALFSLMQREGVRP 328

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
               + + +L++  S   L    +V   L R
Sbjct: 329 -NFPSIISILSVCGSLASLDHGRQVHSQLVR 358



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 129/304 (42%), Gaps = 54/304 (17%)

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
           F  +  ++   I  +++ G I+ A+ +FD++  KT   WN I+AGY  +    EA  L+ 
Sbjct: 12  FSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFD 71

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
           +M +                                        + ++ + LV  Y K G
Sbjct: 72  KMPER---------------------------------------NTISWNGLVSGYVKNG 92

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            I +AR VFDKM  +NV+SW +++ GY   G  +EA  LF +M       N V++  +L 
Sbjct: 93  MISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRM----PEKNVVSWTVMLG 148

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
                G  +    +F  +     +         MI  L  EG L EA  +    P +   
Sbjct: 149 GLIEDGRVDEARRLFDMIPVKDVVAS-----TNMIGGLCSEGRLSEAREIFDEMPQRNVV 203

Query: 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRT 560
             W ++++   +N  +++    A KL+ + P+K    +  +L  Y  SG++ EAAE+ + 
Sbjct: 204 -AWTSMISGYAMNNKVDV----ARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKA 258

Query: 561 LRRK 564
           +  K
Sbjct: 259 MPVK 262



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 100/196 (51%), Gaps = 19/196 (9%)

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           + ++++ G+I+ AR++FD +  K V SWNA++AGY ++ R  EA +LF++M       N 
Sbjct: 23  ISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKM----PERNT 78

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
           +++  ++S   ++G+     ++F  M   + +      +  M+    +EGL+DEA  L  
Sbjct: 79  ISWNGLVSGYVKNGMISEARKVFDKMPERNVVS-----WTSMVRGYVQEGLIDEAELLFW 133

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN---SSGK 550
             P K   + W  +L     +G ++     A +L+ M P K  + V   N+     S G+
Sbjct: 134 RMPEKNVVS-WTVMLGGLIEDGRVD----EARRLFDMIPVK--DVVASTNMIGGLCSEGR 186

Query: 551 LKEAAEVIRTLRRKGL 566
           L EA E+   + ++ +
Sbjct: 187 LSEAREIFDEMPQRNV 202



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/231 (23%), Positives = 110/231 (47%), Gaps = 16/231 (6%)

Query: 89  QMKKPSAGICSQIEKLVLNKRYR-EALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
           QMK+   G  S + K+   K +  EAL LF +++ EG       +  +++S C  L S+ 
Sbjct: 289 QMKEKDDGTWSALIKIYERKGFELEALALFSLMQREG-VRPNFPSIISILSVCGSLASLD 347

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
             ++V S ++ + F+ D+Y+ + ++ M+++CG ++  +R+FD    +++V  N IIAG  
Sbjct: 348 HGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYA 407

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA-------GLELISVGKQLHSCALKM 260
             G   +A  +F +++   +     TF  ++ A         GLE+    K  +    K 
Sbjct: 408 QHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQK- 466

Query: 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALH 310
                   +C ++D+  + G + +A  + + M  E   + W  +++    H
Sbjct: 467 ----TEHYAC-MVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTH 512


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/616 (35%), Positives = 349/616 (56%), Gaps = 48/616 (7%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           ++ AC  + +++  K+V  + +  G   D+++ N ++ M+ +C  M +A ++F+ + +++
Sbjct: 240 ILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKD 299

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLF-------------------------------LDLWE 224
           +VS N ++ G    G +  A  LF                               LD++ 
Sbjct: 300 VVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFR 359

Query: 225 EFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGFG-------DNVFVSCALI 273
           +    G      T A+++   A +  +  GKQ H+  +K           D++ V   LI
Sbjct: 360 QMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLI 419

Query: 274 DMYSKCGSIEDAQGVFD--EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM--RDSGVK 329
           DMY+KC S   A+ +FD  E  +K  V W  +I GYA HG + +AL L+ ++  + + +K
Sbjct: 420 DMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLK 479

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV-ANSALVDFYSKWGRIEDARH 388
            + FT S  +  C RL  L   +Q HA  +R+    +++   + L+D YSK G I+ AR 
Sbjct: 480 PNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARA 539

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           VFD M  +NV+SW +L+ GYG HGRGEEA+ LF+QM   G   + +TFL VL ACS SG+
Sbjct: 540 VFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGM 599

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
            ++G   F  M +   I P A HYACM++LLGR G L+EA  LI+    + T  +W ALL
Sbjct: 600 VDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALL 659

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
           +A R++ N+ELG++AA KL  +  E   +Y +L N+Y ++ + K+ A +   ++  G+R 
Sbjct: 660 SASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRK 719

Query: 569 LPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE 628
            P CSWI+ KK    F  GD+SH ++++IY  +  ++  I   GYVP+    L DVD++E
Sbjct: 720 RPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDEE 779

Query: 629 QRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDAS 687
           +  L + HSEKLAVA+G++ T+   P++I ++ RIC DCH+A+  I+M+   EIV+RD+S
Sbjct: 780 KGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMIIDHEIVLRDSS 839

Query: 688 RFHHFKDGMCSCGDYW 703
           RFHHFK G CSC  YW
Sbjct: 840 RFHHFKKGSCSCRSYW 855



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 121/464 (26%), Positives = 219/464 (47%), Gaps = 55/464 (11%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  ++ AC  + S+R    V + + + G   ++++ N ++ M+ RCG + DA ++FDE+
Sbjct: 129 TFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEV 188

Query: 192 PER---NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS---DCGSRTFATMIRASAGLE 245
            ER   ++VS N I+A  +  G    A  +   +   +S      + T   ++ A A + 
Sbjct: 189 LERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVF 248

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN---- 301
            +  GKQ+H  +++ G  D+VFV  AL+ MY+KC  + +A  VF+ + +K  V WN    
Sbjct: 249 ALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVT 308

Query: 302 -------------------------------TIIAGYALHGYSEEALDLYYEMRDSGVKM 330
                                           +IAGYA  G+  EALD++ +M+  G++ 
Sbjct: 309 GYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEP 368

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL-------DIVANSALVDFYSKWGRI 383
           +  T + ++  C  + +L + KQ HA ++++   L       D++  + L+D Y+K    
Sbjct: 369 NVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSY 428

Query: 384 EDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEAVELFEQML--LNGMRPNHVTFLAV 439
             AR +FD +    KNV++W  +I GY  HG   +A++LF Q+      ++PN  T    
Sbjct: 429 RVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCA 488

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499
           L AC+R G    G ++     R+           C+I++  + G +D A A+      + 
Sbjct: 489 LMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRN 548

Query: 500 TKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVL 541
             + W +L+T   ++G  E  L  F   +  G   + ++  VVL
Sbjct: 549 VVS-WTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVL 591



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 157/335 (46%), Gaps = 23/335 (6%)

Query: 273 IDMYSKCGSIEDAQGVFDEM--SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
           +  Y +CG+  +A  +   +  S  T   WN +I      G  ++ L  Y +M+  G   
Sbjct: 66  VGAYIECGASAEAVSLLQRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLP 125

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
           DH+TF  +++ C  + SL H    HA +  +G G ++   +++V  Y + G ++DA  +F
Sbjct: 126 DHYTFPFVLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMF 185

Query: 391 DKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLN---GMRPNHVTFLAVLSACS 444
           D++L    ++++SWN+++A Y   G+   A+ +  +M  +    +RP+ +T + +L AC+
Sbjct: 186 DEVLERKIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACA 245

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
                + G ++     R+  +    +  A ++ +  +   ++EA  +  G   K   + W
Sbjct: 246 SVFALQHGKQVHGFSVRNGLVDDVFVGNA-LVSMYAKCSKMNEANKVFEGIKKKDVVS-W 303

Query: 505 AALLTACRVNGNLELGKF-AAEKLYGMEPEK-----LSNYVVLLNIYNSSGKLKEAAEVI 558
            A++T     G  ++G F +A  L+ M  E+     +  +  ++  Y   G   EA +V 
Sbjct: 304 NAMVT-----GYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVF 358

Query: 559 RTLRRKGL--RMLPACSWIEVKKQPHVFLSGDQSH 591
           R ++  GL   ++   S +         L G Q+H
Sbjct: 359 RQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTH 393


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/599 (35%), Positives = 351/599 (58%), Gaps = 2/599 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGF-EPDL 165
           ++ +R A EL   ++ E    V   T   ++  C       ++K +  Y L  GF + D 
Sbjct: 377 DRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDE 436

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            + N  +  + +CG +  A  +F  M  + + S N +I G + +G   +A  L+L +   
Sbjct: 437 LVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGS 496

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
             +    T A+++ A A L+ +S GK++H   L+ GF  + F+  +L+ +Y +CG I  A
Sbjct: 497 GLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLA 556

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
           +  FD M EK  V WNT+I G++ + +  +ALD++++M  S +  D  +    +  C+++
Sbjct: 557 KLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQV 616

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           ++L   K+ H   V+           +L+D Y+K G +E ++++FD++  K  ++WN LI
Sbjct: 617 SALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLI 676

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
            GYG HG G +A+ELF+ M   G RP+ VTF+A+L+AC+ +GL   G E    M     I
Sbjct: 677 TGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGI 736

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
           KP+  HYAC++++LGR G L+EA  L+   P K    +W++LL++CR   +L++G+  A 
Sbjct: 737 KPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVAN 796

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
           KL  + P+K  NYV++ N Y   GK  E  ++ + ++  GL+    CSWIE+  +   FL
Sbjct: 797 KLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFL 856

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFG 644
            GD+S +Q+ +I +    +  +I+K GY P+   +L +++E E+ ++L  HSEKLA++FG
Sbjct: 857 VGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAISFG 916

Query: 645 LINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           L+NT+  T L++ ++ RIC DCHNAIKL++ +  REI+VRD  RFHHFK+G CSCGDYW
Sbjct: 917 LLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/361 (32%), Positives = 194/361 (53%), Gaps = 7/361 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N  +R+A+ +F  +     F   + T   +I AC+G+  +R  + V  + L T    D++
Sbjct: 173 NSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVF 232

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW--E 224
           + N ++ M+ + G +  A ++FD+MP+RNLVS N ++   +++G + E++ LF  L   +
Sbjct: 233 VGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGD 292

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
           E       T  T+I   A    + +G   H  ALK+G    + V+ +L+DMYSKCG + +
Sbjct: 293 EGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCE 352

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR-DSGVKMDHFTFSMIIRICT 343
           A+ +FD  +EK  + WN++I GY+       A +L  +M+ +  VK++  T   ++ +C 
Sbjct: 353 ARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCE 411

Query: 344 RLASLEHAKQAHAGLVRHGF--GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
                   K+ H   +RHGF    ++VAN A V  Y+K G +  A  VF  M  K V SW
Sbjct: 412 EEIQFLKLKEIHGYALRHGFIQSDELVAN-AFVAGYAKCGSLHYAEGVFCGMESKMVSSW 470

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           NALI G+  +G   +A++L+  M  +G+ P+  T  ++LSAC+R      G EI  SM R
Sbjct: 471 NALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLR 530

Query: 462 D 462
           +
Sbjct: 531 N 531



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 163/314 (51%), Gaps = 8/314 (2%)

Query: 136 LISACIGLRSIREVKRVFSYM-LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           L+  C   ++I   +++ +++  S  F+ D+ +  R++ M+  C    D+  +F+    +
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDL--WEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           NL   N +++G + +  + +A  +F+++    EF    + T   +I+A  G+  + +G+ 
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVP-DNFTLPCVIKACVGVYDVRLGEA 217

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H  ALK     +VFV  ALI MY K G +E A  VFD+M ++  V WN+++     +G 
Sbjct: 218 VHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGV 277

Query: 313 SEEALDLYYEMR--DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
            EE+  L+  +   D G+  D  T   +I +C R   +      H   ++ G   ++  N
Sbjct: 278 FEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVN 337

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL-NGM 429
           S+L+D YSK G + +AR +FD    KNVISWN++I GY        A EL  +M + + +
Sbjct: 338 SSLLDMYSKCGYLCEARVLFDTNE-KNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKV 396

Query: 430 RPNHVTFLAVLSAC 443
           + N VT L VL  C
Sbjct: 397 KVNEVTLLNVLPVC 410


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/536 (38%), Positives = 318/536 (59%), Gaps = 2/536 (0%)

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N +L M+ +CG++  A  +FD M  R +V+   +IA     G   EA  LF ++  E   
Sbjct: 37  NTLLDMYAKCGVLDGAILVFDLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVS 96

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               T  T++ A A    +  GK +H+   +     N+FV  AL+DMY+KCGS+EDA  V
Sbjct: 97  PDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSV 156

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F EM  K  + WNT+I GY+ +    EAL L+ +M    +K D  T + I+  C  LASL
Sbjct: 157 FLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLE-MKPDGTTLACILPACASLASL 215

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
           +  K+ H  ++R+GF  D    +ALVD Y K G    AR +FD +  K++I+W  +IAGY
Sbjct: 216 DRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGY 275

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
           G HG G  A+  F +M   G+ P+ V+F+++L ACS SGL + GW  F  M  +  +KP+
Sbjct: 276 GMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPK 335

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
             HYAC+++LL R G L  A+  I+  P +    +W ALL+ CR++ +++L +  AE ++
Sbjct: 336 LEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVF 395

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
            +EPE    YV+L N Y  + K +E  ++ + + R+GL+  P CSWIEVK + H+FL+G+
Sbjct: 396 ELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGN 455

Query: 589 QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLIN 647
            SH Q K+I   + R+  ++ + GY P+ +  L + D  Q++  L  HSEKLA+AFG++N
Sbjct: 456 SSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYALINADSLQKETALCGHSEKLAMAFGILN 515

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
                 +++ ++ R+C DCH   K I+   GREIV+RD++RFHHFKDG+C C  +W
Sbjct: 516 LPPARTIRVSKNLRVCGDCHEMAKFISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 166/343 (48%), Gaps = 28/343 (8%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA+ LF  ++ EG       T   ++ AC    S+   K V +Y+     + ++++ N +
Sbjct: 82  EAIRLFHEMDREG-VSPDIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNAL 140

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG M DA  +F EMP ++++S N +I G   +    EA  LF D+  E    G+
Sbjct: 141 MDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLEMKPDGT 200

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T A ++ A A L  +  GK++H   L+ GF  +  V+ AL+DMY KCG    A+ +FD 
Sbjct: 201 -TLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDM 259

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           +  K  + W  +IAGY +HG+   A+  + EMR +G++ D  +F  I+  C+        
Sbjct: 260 IPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACS-------- 311

Query: 352 KQAHAGLVRHGFGLDIVAN------------SALVDFYSKWGRIEDARHVFDKM-LCKNV 398
              H+GL+  G+    V              + +VD  ++ G++  A      M +  + 
Sbjct: 312 ---HSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDA 368

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
             W AL++G   H   + A ++ E +    + P +  +  +L+
Sbjct: 369 TIWGALLSGCRIHHDVKLAEKVAEHVF--ELEPENTGYYVLLA 409



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 97/210 (46%), Gaps = 12/210 (5%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N    EAL LF  +  E   D   +T   ++ AC  L S+   K V  ++L  GF  D  
Sbjct: 178 NSLPNEALSLFGDMVLEMKPD--GTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQ 235

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N ++ M+V+CG+ + AR LFD +P ++L++  ++IAG    G    A   F ++ +  
Sbjct: 236 VANALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAG 295

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHS-----CALKMGFGDNVFVSCALIDMYSKCGS 281
            +    +F +++ A +   L+  G +  +     C +K         +C ++D+ ++ G 
Sbjct: 296 IEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLE---HYAC-IVDLLARSGK 351

Query: 282 IEDAQGVFDEMS-EKTTVGWNTIIAGYALH 310
           +  A      M  E     W  +++G  +H
Sbjct: 352 LAMAYKFIKSMPIEPDATIWGALLSGCRIH 381


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/604 (34%), Positives = 359/604 (59%), Gaps = 35/604 (5%)

Query: 101  IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
            I   V N  Y +AL +F+ +   G  D    TY  ++ A  G   +    ++ + ++  G
Sbjct: 1098 IRSYVNNHLYSDALLVFKNMAGHG-IDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVG 1156

Query: 161  FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
             + ++++ N ++ M+ +CG +++A R+ DZMP R++VS N ++AG   +G + +A    L
Sbjct: 1157 LDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDA----L 1212

Query: 221  DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            ++ +E    G       ++  AG     +    ++C   + F   +F+            
Sbjct: 1213 EVCKEMELLG-------LKPDAGTMASLLPAVTNTCLDNVSFVKEMFM------------ 1253

Query: 281  SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
                      +++ K+ V WN +IA Y  +    EA+D++ +M D  V  D  + + ++ 
Sbjct: 1254 ----------KLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLP 1303

Query: 341  ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
             C  L++L   ++ H  +VR     +++  +AL+D Y+K G +E AR VFD+M  ++V+S
Sbjct: 1304 ACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVS 1363

Query: 401  WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
            W ++I+ YG +G+G +AV LF +M   G+ P+ + F++VLSACS +GL + G   F+ M+
Sbjct: 1364 WTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMT 1423

Query: 461  RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
             + KI PR  H+ CM++LLGR G +DEA+  I+  P +  + +W ALL+ACRV  N+ +G
Sbjct: 1424 EECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIG 1483

Query: 521  KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
              AA++L+ + PE+   YV+L NIY  +G+ ++   V   ++ KG++ +P  S  E+  +
Sbjct: 1484 LLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNR 1543

Query: 581  PHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKL 639
             H FL+GDQSH Q+K+IY ++D ++ ++ + GYVPE  + L DV+E+++   L+ HSEKL
Sbjct: 1544 VHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKL 1603

Query: 640  AVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSC 699
            A+AF ++NT+  +P++I ++ R+C DCH A KLI+ + GREI +RD +RFHHF +G+CSC
Sbjct: 1604 AIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSC 1663

Query: 700  GDYW 703
            GDYW
Sbjct: 1664 GDYW 1667



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 197/387 (50%), Gaps = 38/387 (9%)

Query: 170  RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            +++  +  CG     R +FDE+P++N+V  N++I   +++  Y +A L+F ++     D 
Sbjct: 1065 KLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDP 1124

Query: 230  GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
               T+  +++AS+G E + VG Q+H+  +++G   NVFV   LI MY KCG + +A  V 
Sbjct: 1125 DHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVL 1184

Query: 290  DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
            DZM  +  V WN+++AG A +G  ++AL++  EM   G+K D  T          +ASL 
Sbjct: 1185 DZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGT----------MASL- 1233

Query: 350  HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
                           L  V N+ L         +   + +F K+  K+++SWN +IA Y 
Sbjct: 1234 ---------------LPAVTNTCL-------DNVSFVKEMFMKLANKSLVSWNVMIAVYM 1271

Query: 410  NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            N+    EAV++F QM  + + P+ ++  +VL AC        G  I + + R  +++P  
Sbjct: 1272 NNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVR-KRLQPNL 1330

Query: 470  MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKL 527
            +    +I++  + G L+ A  +     F+   + W ++++A  +NG     +  F+  + 
Sbjct: 1331 LLENALIDMYAKCGCLEYAREVFDQMKFRDVVS-WTSMISAYGMNGKGRDAVSLFSRMQD 1389

Query: 528  YGMEPEKLSNYVVLLNIYNSSGKLKEA 554
             G+ P+ ++ +V +L+  + +G L E 
Sbjct: 1390 LGLNPDSIA-FVSVLSACSHAGLLDEG 1415



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 167/372 (44%), Gaps = 57/372 (15%)

Query: 251  KQLHS-CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
            K+LHS   +      N  +   L+  Y+ CG     + +FDE+ +K  V +N +I  Y  
Sbjct: 1044 KKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVN 1103

Query: 310  HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            +    +AL ++  M   G+  DH+T+  +++  +    L    Q HA +VR G  L++  
Sbjct: 1104 NHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFV 1163

Query: 370  NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
             + L+  Y K G + +A  V D+M C++V+SWN+L+AG   +G+ ++A+E+ ++M L G+
Sbjct: 1164 GNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGL 1223

Query: 430  RPNHVTFLAVLSACSRSGLSERGW--EIFQSMSR-------------------------- 461
            +P+  T  ++L A + + L    +  E+F  ++                           
Sbjct: 1224 KPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIF 1283

Query: 462  ----DHKIKPRAMHYACMIE--------LLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509
                DH + P A+  A ++         LLGR   + E     R  P    +N    +  
Sbjct: 1284 LQMEDHAVDPDAISIASVLPACGDLSALLLGRR--IHEYVVRKRLQPNLLLENALIDMYA 1341

Query: 510  ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR-- 567
             C   G LE   +A E    M+   + ++  +++ Y  +GK ++A  +   ++  GL   
Sbjct: 1342 KC---GCLE---YAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPD 1395

Query: 568  ------MLPACS 573
                  +L ACS
Sbjct: 1396 SIAFVSVLSACS 1407


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/593 (35%), Positives = 345/593 (58%), Gaps = 1/593 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E L LF+ +            +  +IS+C     + E  +   Y L +G     Y++N +
Sbjct: 111 EVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNAL 170

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ R   +  A  ++ E+P  ++ S N+II G++++G   EA  +   + +E     +
Sbjct: 171 ICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDN 230

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T+ T     + L+ + +G Q+H    + G   + FVS A+IDMY KCG+I +A+ VF+ 
Sbjct: 231 VTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNR 290

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           +  K  V W  I+A Y+ +G  EEAL+ + EM   G+  + +TF++++  C  +++L H 
Sbjct: 291 LQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHG 350

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K  H  + + GF   I+  +AL++ YSK G IE A  VF +M+C++ I+W+A+I G  +H
Sbjct: 351 KLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHH 410

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G G EA+ +F++ML     P++VTF+ VLSAC+  G  + G+     + +   I+P   H
Sbjct: 411 GLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEH 470

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           Y C++ LL + G LDEA   ++  P K     W  LL+AC V+ N  LGK  AE +  M+
Sbjct: 471 YTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMD 530

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P  +  Y++L N+Y  + +     ++ + +R + ++  P  SWIE++   HVF+S  ++H
Sbjct: 531 PGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTH 590

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSD 650
            ++ +IY KV  ++  I   GYVP+   +  DV DEQ++  +SYHSEKLA+A+GL+ T  
Sbjct: 591 PESNQIYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPS 650

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             P++++++ R+C DCH+A+KLI+ VT R I+VRDA+RFH F DG CSC DYW
Sbjct: 651 GAPIRVIKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 150/314 (47%), Gaps = 12/314 (3%)

Query: 237 MIRASAGLELISVGKQLHSCAL--KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE 294
           +++ SA  + +  GK +H+  +       DN+    +LI++Y+KC  I  A+ +FD M +
Sbjct: 31  LLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRK 90

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG-VKMDHFTFSMIIRICTRLASLEHAKQ 353
           +  V W  ++AGY  +G   E L L+  M     ++ + + F+ II  C+    +    Q
Sbjct: 91  RNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQ 150

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            H   ++ G        +AL+  YS+   ++ A  V+ ++   +V S+N +I G   +G 
Sbjct: 151 CHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGY 210

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
             EA+E+ ++M+   +  ++VT++     CS       G ++   M R    +  +   +
Sbjct: 211 PSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRT-GAEYDSFVSS 269

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNM--WAALLTACRVNGNLE--LGKFAAEKLYG 529
            +I++ G+ G +  A  +        TKN+  W A+L A   NG  E  L  F   ++ G
Sbjct: 270 AIIDMYGKCGNILNARKVFNRL---QTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDG 326

Query: 530 MEPEKLSNYVVLLN 543
           + P + + + VLLN
Sbjct: 327 LLPNEYT-FAVLLN 339


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 193/438 (44%), Positives = 285/438 (65%), Gaps = 1/438 (0%)

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
            V+ AL+DMY+K G  + A  VF++M++K  + W +++ G   +G  EEAL L+ EMR  
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           G+  D    + ++  C  L  LE  KQ HA  ++ G G  +  +++LV  Y+K G IEDA
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
             VFD M  ++VI+W ALI GY  +GRG E++  +  M+ +G++P+ +TF+ +L ACS +
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHA 182

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           GL E G   FQSM   + IKP   HYACMI+LLGR G L EA  L+     +    +W A
Sbjct: 183 GLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKA 242

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           LL ACRV+GN+ELG+ AA  L+ +EP+    YV+L N+Y+++GK +EAA+  R ++ +G+
Sbjct: 243 LLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGV 302

Query: 567 RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE 626
              P CSWIE+  + H F+S D+SH +T EIY KVD +M+ I + GYVP+    L D+DE
Sbjct: 303 SKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDE 362

Query: 627 QEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
           + + + L+YHSEKLAVAFGL+      P++I ++ RIC DCH A+K ++ V  R +++RD
Sbjct: 363 EGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRD 422

Query: 686 ASRFHHFKDGMCSCGDYW 703
           ++ FHHF++G CSC DYW
Sbjct: 423 SNCFHHFREGACSCSDYW 440



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 137/262 (52%), Gaps = 6/262 (2%)

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N ++ M+ + G    A  +F++M +++++S   ++ G + +G Y EA  LF ++    
Sbjct: 4   VNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG 63

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                   A ++ A A L ++  GKQ+H+  LK G G ++ V  +L+ MY+KCG IEDA 
Sbjct: 64  IHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDAN 123

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VFD M  +  + W  +I GYA +G   E+L+ Y +M  SGVK D  TF  ++  C+   
Sbjct: 124 KVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAG 183

Query: 347 SLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNAL 404
            +EH +     +   +G        + ++D   + G++ +A+ + ++M  + +   W AL
Sbjct: 184 LVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKAL 243

Query: 405 IAG---YGNHGRGEEAV-ELFE 422
           +A    +GN   GE A   LFE
Sbjct: 244 LAACRVHGNVELGERAANNLFE 265



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 96/218 (44%), Gaps = 3/218 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S +   V N  Y EAL LF  +   G          A++SAC  L  +   K+V +  L 
Sbjct: 38  SLVTGCVHNGSYEEALRLFCEMRIMG-IHPDQIVIAAVLSACAELTVLEFGKQVHANFLK 96

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           +G    L + N ++ M+ +CG + DA ++FD M  +++++   +I G   +G   E+   
Sbjct: 97  SGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNF 156

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ-LHSCALKMGFGDNVFVSCALIDMYS 277
           + B+          TF  ++ A +   L+  G+    S     G          +ID+  
Sbjct: 157 YNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLG 216

Query: 278 KCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSE 314
           + G + +A+ + ++M+ +     W  ++A   +HG  E
Sbjct: 217 RSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVE 254


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/579 (36%), Positives = 346/579 (59%), Gaps = 9/579 (1%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S+ Y+A++ A  G R ++++++V ++++ TG+     +  +++ +      +     LF 
Sbjct: 9   SAAYEAIVRA--GPR-VKQLQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFL 65

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
            +P  +    N +I         L     +  +        + TF ++I++ A L  + +
Sbjct: 66  SVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALRI 125

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           GK +H  A+  GFG + +V  AL+  YSKCG +E A+ VFD M EK+ V WN++++G+  
Sbjct: 126 GKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQ 185

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +G ++EA+ ++Y+MR+SG + D  TF  ++  C +  ++      H  ++  G  L++  
Sbjct: 186 NGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKL 245

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN-G 428
            +AL++ YS+ G +  AR VFDKM   NV +W A+I+ YG HG G++AVELF +M  + G
Sbjct: 246 GTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCG 305

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
             PN+VTF+AVLSAC+ +GL E G  +++ M++ +++ P   H+ CM+++LGR G LDEA
Sbjct: 306 PIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEA 365

Query: 489 FALIR---GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
           +  I         T   +W A+L AC+++ N +LG   A++L  +EP+   ++V+L NIY
Sbjct: 366 YKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIY 425

Query: 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
             SGK  E + +   + R  LR     S IEV+ + ++F  GD+SH +T EIYR ++ ++
Sbjct: 426 ALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLI 485

Query: 606 LEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICC 664
               + GY P  + ++  V+E+E+   L YHSEKLAVAFGL+ T D   + IV++ RIC 
Sbjct: 486 SRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRICE 544

Query: 665 DCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           DCH+A K I++V+ R+I VRD  RFHHF++G CSC DYW
Sbjct: 545 DCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 128/299 (42%), Gaps = 55/299 (18%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA+++F  +  E GF+  S+T+ +L+SAC    ++     V  Y++S G + ++ +   +
Sbjct: 191 EAIQVFYQMR-ESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTAL 249

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG- 230
           + ++ RCG +  AR +FD+M E N+ +   +I+     G   +A  LF  + +   DCG 
Sbjct: 250 INLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMED---DCGP 306

Query: 231 ---SRTFATMIRASAGLELISVGKQLH-----SCALKMGFGDNVFVSCALIDMYSKCGSI 282
              + TF  ++ A A   L+  G+ ++     S  L  G   +V     ++DM  + G +
Sbjct: 307 IPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHV----CMVDMLGRAGFL 362

Query: 283 EDAQGV---FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           ++A       D   + T     T + G                      KM H  + + +
Sbjct: 363 DEAYKFIHQLDATGKATAPALWTAMLG--------------------ACKM-HRNYDLGV 401

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
            I  RL +LE     H              +  L + Y+  G+ ++  H+ D M+  N+
Sbjct: 402 EIAKRLIALEPDNPGH--------------HVMLSNIYALSGKTDEVSHIRDGMMRNNL 446


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/641 (34%), Positives = 366/641 (57%), Gaps = 12/641 (1%)

Query: 70  PKPNKIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVG 129
           P   +  T +L  SS        P++     I+ L      ++AL L   L  E   +  
Sbjct: 14  PSSPRYSTSKLSVSSFSFNPSTPPNSNNNHLIQSLCKQGNLKQALYL---LSHES--NPT 68

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
             T + LI +     S+ +   V   ++  GF+ D ++  +++ M      + +AR++FD
Sbjct: 69  QQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFD 128

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE---- 245
           +  +R +   N +   +  +G   +   L+  +          T+  +++A    E    
Sbjct: 129 KTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVS 188

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
            +  GK++H+  L+ G+G +V V   L+DMY++ G +  A  VFDEM  K  V W+ +IA
Sbjct: 189 FLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIA 248

Query: 306 GYALHGYSEEALDLYYEM--RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
            YA +G   EAL+L+ EM         +  T   +++ C   A+LE  K  HA ++R G 
Sbjct: 249 CYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGL 308

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
              +   SAL+  Y++ G++E  + +FD+M  K+V+ WN+LI+ YG HG G +A+++FE+
Sbjct: 309 DSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEE 368

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           M+ +G  P+H++F++VL ACS +GL E G ++F+SM ++H I+P   HYACM++LLGR  
Sbjct: 369 MIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRAN 428

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
            LDEA  +I     +    +W +LL ACR++ ++EL + A+++L+ +EP    NYV+L +
Sbjct: 429 RLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLAD 488

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           IY  +    E   V + L  + L+ +P  SWIEV+++ + F S D+ + Q ++++  +  
Sbjct: 489 IYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVN 548

Query: 604 MMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           +  E+ + GY P+ K +L D+D++E +R++  HSEKLAVAFGLINTS    ++I ++ R+
Sbjct: 549 LSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSEKLAVAFGLINTSKGDTIRITKNLRL 608

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH+  K I+    REI+VRD +RFHHFKDG+CSCGDYW
Sbjct: 609 CEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSCGDYW 649


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 224/609 (36%), Positives = 350/609 (57%), Gaps = 6/609 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N+R+  AL  F  +  +        T+  +  A   ++     K++    L 
Sbjct: 78  SLISGCVHNRRFLPALLHFTNMRRDN-VQPNDFTFPCVFKASAFVQIPMTGKQIHGLALK 136

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G   D+++      M+ + G   DA  +FDEMP+RNL + N  I+  +     L+A + 
Sbjct: 137 GGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVA 196

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F +      +  S TF   + A   +  +++G+QLH+  ++ G+ ++V V+  LID Y K
Sbjct: 197 FKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGK 256

Query: 279 CGSIEDAQGVFDEM-SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           CG I  A+ VF+ + + K  V W +++A    +   E A  ++ + R   V+   F  S 
Sbjct: 257 CGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKE-VEPTDFMISS 315

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           ++  C  L  LE  +  HA  V+     +I   SALVD Y K G IE+A  VF ++  +N
Sbjct: 316 VLSACAELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERN 375

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLL--NGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           +++WNA+I GY + G  + A+ LFE+M L  +G+RP++VT +++LS CSR G  ERG +I
Sbjct: 376 LVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQI 435

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F+SM  ++ I+P A H+AC+++LLGR GL+D A+  I+    + T ++W ALL ACR++G
Sbjct: 436 FESMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHG 495

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575
             ELGK AAEKL+ ++     N+VVL N+  S+G+ +EA  V + ++  G++     SWI
Sbjct: 496 KTELGKIAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWI 555

Query: 576 EVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSY 634
            VK + HVF + D SH +  EI   + ++   + + GYVP+    L D+ DE++   + Y
Sbjct: 556 AVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWY 615

Query: 635 HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKD 694
           HSEK+A+AFGLI      P++I ++ RIC DCH+AIK I+ + GREI+VRD  RFH FKD
Sbjct: 616 HSEKIALAFGLIALPQGVPIRITKNLRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKD 675

Query: 695 GMCSCGDYW 703
           G CSC DYW
Sbjct: 676 GCCSCKDYW 684



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 202/419 (48%), Gaps = 10/419 (2%)

Query: 150 KRVFSYMLSTGFEP-DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
           + + ++++ T   P   ++ N ++ M+ +  ++  A+ +      R +V+   +I+G + 
Sbjct: 26  RTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISGCVH 85

Query: 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
           +  +L A L F ++  +       TF  + +ASA +++   GKQ+H  ALK G   +VFV
Sbjct: 86  NRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFV 145

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
            C+  DMY K G   DA  +FDEM ++    WN  I+       S +A+  + E      
Sbjct: 146 GCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHG 205

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
           + +  TF   +  C  +  L   +Q HA +VR G+  D+   + L+DFY K G I  A  
Sbjct: 206 EPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEM 265

Query: 389 VFDKMLC-KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
           VF+++   KNV+SW +++A    +   E A  +F Q     + P      +VLSAC+  G
Sbjct: 266 VFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQA-RKEVEPTDFMISSVLSACAELG 324

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
             E G  +  +++    ++      + ++++ G+ G ++ A  +    P +     W A+
Sbjct: 325 GLELGRSV-HALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVT-WNAM 382

Query: 508 LTACRVNGNLELGKFAAEKL----YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           +      G++++     E++    +G+ P  ++  + +L++ +  G ++   ++  ++R
Sbjct: 383 IGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVT-LISILSVCSRVGAVERGIQIFESMR 440


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/524 (37%), Positives = 325/524 (62%), Gaps = 4/524 (0%)

Query: 184 ARRLFDEMPER-NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE-FSDCGSRTFATMIRAS 241
           A ++F ++ +  N+   N +I G  + G+ + A  L+ ++    F +  + T+  +++A 
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAV 131

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
             +  + +G+ +HS  ++ GFG  ++V  +L+ +Y+ CG +  A  VFD+M EK  V WN
Sbjct: 132 GKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           ++I G+A +G  EEAL LY EM   G+K D FT   ++  C ++ +L   K+ H  +++ 
Sbjct: 192 SVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKV 251

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           G   ++ +++ L+D Y++ GR+E+A+ +FD+M+ KN +SW +LI G   +G G+EA+ELF
Sbjct: 252 GLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELF 311

Query: 422 EQM-LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
           + M    G+ P  +TF+ +L ACS  G+ + G+E F+ MS ++KI+PR  H+ CM++LL 
Sbjct: 312 KNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLA 371

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540
           R G + +A+  I   P +    +W  LL AC V+G+ +L + A  K+  +EP    +YV+
Sbjct: 372 RAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVL 431

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRK 600
           L N+Y S  +  +  ++ + + R G+R +P  S +EV  + H FL GD+SH Q   IY K
Sbjct: 432 LSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAK 491

Query: 601 VDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQS 659
           +  M   +   GYVP+   +  DV+E+E +  L YHSEK+A+AF LI+T +  P+++V++
Sbjct: 492 LKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPIRVVKN 551

Query: 660 HRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++C DCH AIKL++ V  REIVVRD SRFHHFK+G CSC DYW
Sbjct: 552 LKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 197/405 (48%), Gaps = 43/405 (10%)

Query: 84  SLPDTQMKKPSAGICSQIEKLV-------LNKRYRE------ALELFEILEFEGGFDVGS 130
           SLP       +  + S+IEK +       L + Y E      A+ L+  +   G  +  +
Sbjct: 62  SLPSPPPMSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDT 121

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
            TY  L+ A   +  +R  + + S ++ +GF   +Y++N +L ++  CG +  A ++FD+
Sbjct: 122 HTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDK 181

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           MPE++LV+ N +I G  ++G   EA  L+ ++  +       T  +++ A A +  +++G
Sbjct: 182 MPEKDLVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLG 241

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           K+ H   +K+G   N+  S  L+D+Y++CG +E+A+ +FDEM +K +V W ++I G A++
Sbjct: 242 KRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVN 301

Query: 311 GYSEEALDLYYEMRDS-GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL---- 365
           G  +EA++L+  M    G+     TF  I+  C+           H G+V+ GF      
Sbjct: 302 GLGKEAIELFKNMESKEGLLPCEITFVGILYACS-----------HCGMVKEGFEYFRRM 350

Query: 366 --------DIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEE 416
                    I     +VD  ++ G+++ A     KM +  NV+ W  L+     HG  + 
Sbjct: 351 SEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDL 410

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           A EL    +L  + PNH     +LS       SE+ W   Q + +
Sbjct: 411 A-ELARMKILQ-LEPNHSGDYVLLSNMYA---SEQRWSDVQKIRK 450


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/527 (38%), Positives = 310/527 (58%), Gaps = 4/527 (0%)

Query: 181 MIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT---FATM 237
           +  AR LFD MP R+  S + I++     G    A  ++  +  E    G       ++ 
Sbjct: 109 LASARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSA 168

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           + A+        G++LH   ++ G   +  V  AL DMY+KCG ++DA+ VFD M  +  
Sbjct: 169 LAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDV 228

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           V W  ++  Y       E   L+  M  SG++ + FT++ ++R C    S +  KQ H  
Sbjct: 229 VSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGR 288

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           + +   G    A SALV  YSK+G +  A  VF  M   +++SW A+I+GY  +G+ +EA
Sbjct: 289 MTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEA 348

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           +  F+ +L +G RP+HVTF+ VLSAC+ +GL ++G  IF S+  ++ I+  A HYAC+I+
Sbjct: 349 LRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVID 408

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
           LL R GL + A  +I     K  K +WA+LL  CR++ N+ L ++AAE L+ +EPE  + 
Sbjct: 409 LLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPAT 468

Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI 597
           YV L NIY S G   E     R +  KG+  +PA SWIEV  + HVFL GD+ H Q +++
Sbjct: 469 YVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQV 528

Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQI 656
           Y  + ++ +++ + GYV +   +L DV DEQ+Q+ + YHSE+LAVAFG+I T    P+++
Sbjct: 529 YALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAPIKV 588

Query: 657 VQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++ RIC DCH  IKLI+ +  REI+VRD++RFHHFK+G CSC DYW
Sbjct: 589 FKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/266 (30%), Positives = 129/266 (48%), Gaps = 24/266 (9%)

Query: 155 YMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLE 214
           +++  G + D  + + +  M+ +CG + DAR +FD MP R++VS   ++    D+    E
Sbjct: 187 HVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGE 246

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
            F LF+ +          T+A ++RA A      +GKQ+H    K   GD+ F   AL+ 
Sbjct: 247 GFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVH 306

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MYSK G +  A  VF  M +   V W  +I+GYA +G  +EAL  +  +  SG + DH T
Sbjct: 307 MYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVT 366

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHG----------FGLDIVAN--SALVDFYSKWGR 382
           F  ++  C           AHAGLV  G          +G++  A+  + ++D  S+ G 
Sbjct: 367 FVGVLSAC-----------AHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGL 415

Query: 383 IEDARHVFDKMLCK-NVISWNALIAG 407
            E A  + + M  K N   W +L+ G
Sbjct: 416 FERAEEMINTMSVKPNKFLWASLLGG 441



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 90/214 (42%), Gaps = 3/214 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + +E+    +R  E   LF +     G      TY  ++ AC    S +  K+V   M  
Sbjct: 233 AMVERYFDARRDGEGFRLF-VRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTK 291

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           +      +  + ++ M+ + G M  A R+F  MP+ +LVS   +I+G   +G   EA   
Sbjct: 292 SRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRY 351

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL-HSCALKMGFGDNVFVSCALIDMYS 277
           F  L          TF  ++ A A   L+  G  + HS   + G          +ID+ S
Sbjct: 352 FDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLS 411

Query: 278 KCGSIEDAQGVFDEMSEKTT-VGWNTIIAGYALH 310
           + G  E A+ + + MS K     W +++ G  +H
Sbjct: 412 RSGLFERAEEMINTMSVKPNKFLWASLLGGCRIH 445


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/587 (37%), Positives = 347/587 (59%), Gaps = 23/587 (3%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T++ LI +C    S+ +   V   ++S+GF+ D ++  +++ M+   G +  AR++FDE 
Sbjct: 80  TFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDET 139

Query: 192 PERNLVSCNMII--AGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLE 245
            ER +   N +     M+  G  L      LDL+ + +  G      T+  +++A    E
Sbjct: 140 RERTIYVWNALFRALAMVGCGKEL------LDLYVQMNWIGIPSDRFTYTFVLKACVVSE 193

Query: 246 L----ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
           L    +  GK++H+  L+ G+  N+ V   L+D+Y+K GS+  A  VF  M  K  V W+
Sbjct: 194 LSVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWS 253

Query: 302 TIIAGYALHGYSEEALDLY----YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
            +IA +A +    +AL+L+     E  DS    +  T   +++ C  LA+LE  K  H  
Sbjct: 254 AMIACFAKNEMPMKALELFQLMMLEAHDS--VPNSVTMVNVLQACAGLAALEQGKLIHGY 311

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           ++R G    +   +AL+  Y + G I   + VFD M  ++V+SWN+LI+ YG HG G++A
Sbjct: 312 ILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKA 371

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           +++FE M+  G  P++++F+ VL ACS +GL E G  +F+SM   ++I P   HYACM++
Sbjct: 372 IQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVD 431

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
           LLGR   LDEA  LI    F+    +W +LL +CR++ N+EL + A+  L+ +EP    N
Sbjct: 432 LLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGN 491

Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI 597
           YV+L +IY  +    EA  V++ L  +GL+ LP CSWIEVK++ + F+S D+ + Q +EI
Sbjct: 492 YVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEI 551

Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQI 656
           +  + ++  E+   GYVP+   +L D+DE+E +R++  HSEKLAVAFGLINT     ++I
Sbjct: 552 HALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTVKGETIRI 611

Query: 657 VQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++ R+C DCH   K I+    REI+VRD +RFHHFKDG+CSCGDYW
Sbjct: 612 RKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDGVCSCGDYW 658



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 178/372 (47%), Gaps = 43/372 (11%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           RTF  +I + A    +S G  +H   +  GF  + F++  LI+MY + GSI+ A+ VFDE
Sbjct: 79  RTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDE 138

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT----RLAS 347
             E+T   WN +    A+ G  +E LDLY +M   G+  D FT++ +++ C      ++ 
Sbjct: 139 TRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVSP 198

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           L+  K+ HA ++RHG+  +I   + L+D Y+K+G +  A  VF  M  KN +SW+A+IA 
Sbjct: 199 LQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIAC 258

Query: 408 YGNHGRGEEAVELFEQMLLNGMR--PNHVTFLAVLSACS----------------RSGLS 449
           +  +    +A+ELF+ M+L      PN VT + VL AC+                R GL 
Sbjct: 259 FAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLD 318

Query: 450 E-------------RGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLLDEAFALIRGA 495
                         R  EI         +K R  + +  +I + G  G   +A  +    
Sbjct: 319 SILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENM 378

Query: 496 PFKTTKNMWAALLT---ACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSG 549
             + +   + + +T   AC   G +E GK   E +   Y + P  + +Y  ++++   + 
Sbjct: 379 IHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHP-GMEHYACMVDLLGRAN 437

Query: 550 KLKEAAEVIRTL 561
           +L EA ++I  +
Sbjct: 438 RLDEAIKLIEDM 449



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 114/229 (49%), Gaps = 8/229 (3%)

Query: 107 NKRYREALELFEILEFEGGFDVGSS-TYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           N+   +ALELF+++  E    V +S T   ++ AC GL ++ + K +  Y+L  G +  L
Sbjct: 262 NEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSIL 321

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            + N ++ M+ RCG ++  +R+FD M  R++VS N +I+     G   +A  +F ++  +
Sbjct: 322 PVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQ 381

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCAL-KMGFGDNVFVSCALIDMYSKCGSIED 284
            S     +F T++ A +   L+  GK L    L K      +     ++D+  +   +++
Sbjct: 382 GSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDE 441

Query: 285 AQGVFDEMS-EKTTVGWNTIIAGYALH---GYSEEALDLYYEM--RDSG 327
           A  + ++M  E     W +++    +H     +E A  L +E+  R++G
Sbjct: 442 AIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAG 490


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/578 (36%), Positives = 345/578 (59%), Gaps = 5/578 (0%)

Query: 128 VGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL 187
           + S+ Y+A++SA   LR +++     ++++ TG      +  ++L +    G +   RRL
Sbjct: 8   IKSAEYEAVVSAGPHLRRLQQAH---AHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRL 64

Query: 188 FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI 247
           F  + + +    N +I      G  L+A L +  +        + TF ++I+A A L L+
Sbjct: 65  FRSVSDPDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLL 124

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
            +G  +HS     G+  + FV  ALI  Y+K  +   A+ VFDEM +++ V WN++I+GY
Sbjct: 125 CIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGY 184

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
             +G + EA++++ +MR+S V+ D  TF  ++  C++L SL+     H  +V  G  +++
Sbjct: 185 EQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNV 244

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
           V  ++LV+ +S+ G +  AR VF  M+  NV+ W A+I+GYG HG G EA+E+F +M   
Sbjct: 245 VLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKAR 304

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G+ PN VTF+AVLSAC+ +GL + G  +F SM +++ + P   H+ CM+++ GR GLL+E
Sbjct: 305 GVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNE 364

Query: 488 AFALIRG-APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546
           A+  ++G    +    +W A+L AC+++ N +LG   AE L   EPE   +YV+L N+Y 
Sbjct: 365 AYQFVKGLNSDELVPAVWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMYA 424

Query: 547 SSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMML 606
            +G++     V   + ++GL+     S I+V  + ++F  GD+SH +T EIY  +D ++ 
Sbjct: 425 LAGRMDRVESVRNVMIQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELIW 484

Query: 607 EISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCD 665
                GY P  ++ + +++ E+ +  L YHSEKLAVAFGL+ T D   L+IV++ RIC D
Sbjct: 485 RCKDAGYAPVPESAMHELEGEEREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRICED 544

Query: 666 CHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           CH+AIK I+ V  REI+VRD  RFHHF++G CSC DYW
Sbjct: 545 CHSAIKFISAVMNREIIVRDKLRFHHFREGSCSCSDYW 582


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/660 (34%), Positives = 372/660 (56%), Gaps = 34/660 (5%)

Query: 73  NKIYTEELKESSLPDTQMKKPSAGICSQ-IEKLVLNKRYREALELFEILEFEGGFDVGSS 131
           N +  + L ++ L   ++  P+  + ++ I     N R  +AL+LF+ +      DV S 
Sbjct: 21  NHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVR---DVVS- 76

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN------------RVLL-MHVR- 177
            ++++I  C+   ++    R+F  M          M N            R+ L MHV+ 
Sbjct: 77  -WNSMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKD 135

Query: 178 -------------CGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
                         G + +  RLF+EMP R+++S   +I G+  +G   EA  +F  +  
Sbjct: 136 VAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLR 195

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
              +    TFA ++ A A     ++G Q+H   +K+G   + F+S +LI  Y+ C  IE 
Sbjct: 196 SGVEPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEH 255

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A  +F+E   K  V W  ++  Y  +   ++AL ++ +M   G   +  TFS+ ++ C  
Sbjct: 256 AHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCG 315

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           L +L+  K+ H   ++ G   D+   ++LV  Y++ G +  A  VF  +  K+++SWN++
Sbjct: 316 LEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSI 375

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I G   HG G  A+  F QM+  G+ PN +TF  +LSACSRSG+  +G   F+ +SR   
Sbjct: 376 IVGSAQHGFGLWALIFFNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKS 435

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
              R  HYACM+++LGR G LDEA  L+R  P K    +W ALL+ACRV+ NLE+ + AA
Sbjct: 436 NVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAERAA 495

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
           + +  +EP   S YV+L NIY S+G+  + + +   +++ GL   P  SW+ ++ + H F
Sbjct: 496 KHILDLEPNCSSAYVLLSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKKHEF 555

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAF 643
           LS D+SH  ++ IY K+D +  ++ + GYVP++K  L DV DEQ++ +LS+HSE+LA+AF
Sbjct: 556 LSADRSHPLSERIYEKLDWLGKKLKEFGYVPDQKFALHDVEDEQKEEMLSFHSERLAIAF 615

Query: 644 GLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           GL++T + + + ++++ R+C DCH+ IKL++ + GR+IVVRD+ RFHHFK+G+CSC DYW
Sbjct: 616 GLVSTVEGSTITVMKNLRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFKNGICSCSDYW 675


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 225/606 (37%), Positives = 360/606 (59%), Gaps = 20/606 (3%)

Query: 111 REALELFEILEFEGGF-DVGSSTYDALISAC---IGLRSIREVKRVFSYMLSTGFEPDLY 166
           + A +LF  LE    F D+   T   +I+AC   +GL     ++++ +  + TG +  + 
Sbjct: 122 QPAFQLF--LEMREAFLDMDGFTLSGIITACGINVGL-----IRQLHALSVVTGLDSYVS 174

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPE-RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
           + N ++  + + G + +ARR+F  + E R+ VS N ++   +   +  +A  L+L++   
Sbjct: 175 VGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVR 234

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS-IED 284
                  T A+++ A   ++ +  G Q H+  +K G+  N  V   LID+YSKCG  + D
Sbjct: 235 GLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLD 294

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALH-GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
            + VFDE+S    V WNT+I+GY+L+   S+EAL+ + +++  G + D  +   +I  C+
Sbjct: 295 CRKVFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACS 354

Query: 344 RLASLEHAKQAHAGLVRHGFGLD-IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
            ++S    +Q H   ++     + I  N+AL+  YSK G + DA+ +FD M   N +S+N
Sbjct: 355 NMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYN 414

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           ++IAGY  HG G +++ LF++ML     P ++TF++VL+AC+ +G  E G   F  M + 
Sbjct: 415 SMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQK 474

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
             I+P A H++CMI+LLGR G L EA  LI   PF      W+ALL ACR++GN+EL   
Sbjct: 475 FGIEPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIK 534

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPH 582
           AA +L  ++P   + YV+L NIY+ +G+L++AA V + +R +G++  P CSWIEV ++ H
Sbjct: 535 AANRLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIH 594

Query: 583 VFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-----QEQRVLSYHSE 637
           +F++ D  H   K+I   ++ MM +I K GY PE ++     D+     +E+  L +HSE
Sbjct: 595 IFVAEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSASVGGDDRVWQREEELRLGHHSE 654

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLAV+FGL++T +  P+ + ++ RIC DCHNAIK I+ V  REI VRD+ RFH FKDG C
Sbjct: 655 KLAVSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQC 714

Query: 698 SCGDYW 703
           SCG YW
Sbjct: 715 SCGGYW 720



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 137/503 (27%), Positives = 226/503 (44%), Gaps = 78/503 (15%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR----- 186
           ++   +  CI  R +R  K + +  + +      Y+ N  LL++ +C  +  ARR     
Sbjct: 10  SFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 187 --------------------------LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
                                     LFDEMP+ + VS N +IA     GD   AF LFL
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFL 129

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVG--KQLHSCALKMGFGDNVFVSCALIDMYSK 278
           ++ E F D    T + +I A      I+VG  +QLH+ ++  G    V V  ALI  YSK
Sbjct: 130 EMREAFLDMDGFTLSGIITACG----INVGLIRQLHALSVVTGLDSYVSVGNALITSYSK 185

Query: 279 CGSIEDAQGVFDEMSE-KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
            G +++A+ +F  +SE +  V WN+++  Y  H    +AL+LY EM   G+ +D FT + 
Sbjct: 186 NGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLAS 245

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR-IEDARHVFDKMLCK 396
           ++   T +  L    Q HA L++ G+  +    S L+D YSK G  + D R VFD++   
Sbjct: 246 VLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNP 305

Query: 397 NVISWNALIAGYGNH-GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           +++ WN +I+GY  +    +EA+E F Q+   G RP+  + + V+SACS      +G ++
Sbjct: 306 DLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQV 365

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP------------------- 496
                +      R      +I +  + G L +A  L    P                   
Sbjct: 366 HGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGM 425

Query: 497 ---------------FKTTKNMWAALLTACRVNGNLELGKF---AAEKLYGMEPEKLSNY 538
                          F  T   + ++L AC   G +E GK      ++ +G+EPE   ++
Sbjct: 426 GFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGIEPEA-GHF 484

Query: 539 VVLLNIYNSSGKLKEAAEVIRTL 561
             ++++   +GKL EA  +I T+
Sbjct: 485 SCMIDLLGRAGKLSEAERLIETI 507



 Score = 60.8 bits (146), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 99/238 (41%), Gaps = 45/238 (18%)

Query: 330 MDHFT-----FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           M HF+     F   ++ C     L   K  HA  ++         ++  +  YSK  R+ 
Sbjct: 1   MHHFSSLLHSFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLS 60

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            AR VFD     NV S+N LI+ Y      E A +LF++M     +P+ V++  +++A +
Sbjct: 61  AARRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEM----PQPDSVSYNTLIAAYA 116

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD-EAFALIRGAPFKTTKNM 503
           R G ++  +++F  M                     RE  LD + F L            
Sbjct: 117 RRGDTQPAFQLFLEM---------------------REAFLDMDGFTL------------ 143

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            + ++TAC +N  L     A   + G++   +S    L+  Y+ +G LKEA  +   L
Sbjct: 144 -SGIITACGINVGLIRQLHALSVVTGLD-SYVSVGNALITSYSKNGFLKEARRIFHWL 199


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/561 (36%), Positives = 340/561 (60%), Gaps = 2/561 (0%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           RS+ + +++ ++++ +G +    + + ++  + +  + + + ++F+E   ++  + + +I
Sbjct: 68  RSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSSVI 127

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
           +    + + + A   F  +  E        F +  +A A L    VGK +H   +K G+ 
Sbjct: 128 SSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSVHCLVIKTGYD 187

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
            +VFV  +L+DMY+KCG I++A+ VFDEM  +  V W+ +I GY   G  EEA+ L+ E 
Sbjct: 188 VDVFVGSSLVDMYAKCGDIKEARNVFDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEA 247

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
              G+ ++ FT S +IR+C     LE  KQ H    +  + L     S+L+  YSK G I
Sbjct: 248 LLEGLDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLI 307

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           E A  VFD++  KN+  WNA++     H   +EA +LF +M   GMRPN +TFL VL AC
Sbjct: 308 EGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYAC 367

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S +GL E G + F  M + ++I+P   HYA M++LLGR G L EA ++I+G P + T+++
Sbjct: 368 SHAGLVEEGKKYFALMKK-YEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESV 426

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           W A +T CR++GN +L  FAA+K++ +       +V+L N Y ++G+ ++AA+  + LR 
Sbjct: 427 WGAFITGCRIHGNTDLAAFAADKVFELGAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRD 486

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
           +G++     SWIE   + H F +GD+ HV+ KEIY+K++ +  E+ + GYV +   +L +
Sbjct: 487 RGVKKETGLSWIEEGNRVHKFAAGDRFHVRMKEIYQKLEDLGEEMERAGYVADTSFVLRE 546

Query: 624 V-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           V  E++ + + YHSE+LA+AFGLI+     P++I+++ R+C DCHNAIK I+ ++GR I+
Sbjct: 547 VGSEEKNQTIRYHSERLAIAFGLISIPLGRPIRIMKNLRVCGDCHNAIKFISKLSGRVII 606

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           VRD +RFH F+DG CSC DYW
Sbjct: 607 VRDNNRFHRFEDGKCSCADYW 627



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 151/286 (52%), Gaps = 1/286 (0%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           + +   AC  L      K V   ++ TG++ D+++ + ++ M+ +CG + +AR +FDEMP
Sbjct: 158 FPSATKACAILGRCDVGKSVHCLVIKTGYDVDVFVGSSLVDMYAKCGDIKEARNVFDEMP 217

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
            RN+VS + +I G    G++ EA  LF +   E  D    T +++IR      L+ +GKQ
Sbjct: 218 HRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVNDFTLSSVIRVCGSATLLELGKQ 277

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H    K  +  + FV  +LI +YSKCG IE A  VFDE+  K    WN ++   A H +
Sbjct: 278 IHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAH 337

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
           ++EA DL+ +M ++G++ +  TF  ++  C+    +E  K+  A + ++         ++
Sbjct: 338 TKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYFALMKKYEIEPGTQHYAS 397

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVIS-WNALIAGYGNHGRGEEA 417
           +VD   + G++++A  V   M  +   S W A I G   HG  + A
Sbjct: 398 MVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLA 443



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 10/212 (4%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + EA+ LF+    EG  DV   T  ++I  C     +   K++      T ++   ++ +
Sbjct: 237 HEEAMRLFKEALLEG-LDVNDFTLSSVIRVCGSATLLELGKQIHGLCFKTSYDLSGFVGS 295

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ ++ +CG++  A R+FDE+P +NL   N ++          EAF    DL+ +  + 
Sbjct: 296 SLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIACAQHAHTKEAF----DLFTKMENA 351

Query: 230 GSR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
           G R    TF  ++ A +   L+  GK+  +   K           +++D+  + G +++A
Sbjct: 352 GMRPNFITFLCVLYACSHAGLVEEGKKYFALMKKYEIEPGTQHYASMVDLLGRAGKLQEA 411

Query: 286 QGVFDEM-SEKTTVGWNTIIAGYALHGYSEEA 316
             V   M +E T   W   I G  +HG ++ A
Sbjct: 412 LSVIKGMPTEPTESVWGAFITGCRIHGNTDLA 443



 Score = 43.5 bits (101), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 27/113 (23%), Positives = 56/113 (49%)

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
           TR  SL   +Q HA +++ G  +  +    L++FYSK      +  VF++   K+  +W+
Sbjct: 65  TRSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWS 124

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           ++I+ +  +     A++ F +M+   + P+   F +   AC+  G  + G  +
Sbjct: 125 SVISSFAQNEEPVLAIQYFCRMIGENLCPDDHIFPSATKACAILGRCDVGKSV 177


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/522 (38%), Positives = 325/522 (62%), Gaps = 2/522 (0%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
            RRLF  +P+ +    + +I          E+ L +  +        + TF+ +I++SA 
Sbjct: 71  TRRLFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAVIKSSAD 130

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L   S+G+ +H      G+G + +V  AL+  Y+K G +  A+ VFD+M EKT V WN++
Sbjct: 131 LTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSM 190

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I+GY  +G+ +EA++L++ M+D GVK D  TF  ++  C ++ ++      H  + R+ F
Sbjct: 191 ISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCF 250

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
            L++V  +AL++ YS+ G +  AR VFD M  KN+++W A+I+GYG HG G +A+ELF +
Sbjct: 251 DLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNE 310

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           M  +G RPN+VTF+AVLSAC+ +GL + G +IF +M +++ + P   H  CM+++LGR G
Sbjct: 311 MSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAG 370

Query: 484 LLDEAFALIRG-APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
            L+EA+  I+  +P +    +W A+L AC+++ N +LG   AE L  +EPE   +YV+L 
Sbjct: 371 HLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLS 430

Query: 543 NIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVD 602
           NIY  +G++    ++   + R  L+     S I+V  + ++F  GD+SH +T +IY  +D
Sbjct: 431 NIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLD 490

Query: 603 RMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHR 661
            +M    + GY+P  ++++ +V+E+E+   L YHSEKLA+AFGL+ T     ++IV++ R
Sbjct: 491 ELMSRCREAGYIPASESVMHEVEEEEREYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLR 550

Query: 662 ICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +C DCH AIK I+++  REI VRD  RFHHFKDG CSC DYW
Sbjct: 551 MCEDCHTAIKYISIIANREINVRDRLRFHHFKDGSCSCQDYW 592



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 165/335 (49%), Gaps = 6/335 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+ A+I +   L +    + +  ++   G+  D Y++  ++  + + G ++ AR++FD+M
Sbjct: 120 TFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKM 179

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           PE+ +V+ N +I+G   +G   EA  LF  + +      S TF +++ A A +  I +G 
Sbjct: 180 PEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGF 239

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            +H    +  F  NV +  AL++MYS+CG++  A+ VFD M EK  V W  +I+GY +HG
Sbjct: 240 WVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHG 299

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVAN 370
           +  +A++L+ EM   G + ++ TF  ++  C     ++  +Q    + + +G    +   
Sbjct: 300 HGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQ 359

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVIS--WNALIAGYGNHGRGEEAVELFEQML-LN 427
             +VD   + G + +A         K      W A++     H   +  VE+ E +L + 
Sbjct: 360 VCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIE 419

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
              P H   L+ + A   +G  +R  +I   M R+
Sbjct: 420 PENPGHYVMLSNIYAL--AGRMDRVEKIRNIMIRN 452



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 162/356 (45%), Gaps = 48/356 (13%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDM-YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           +Q+H+  +  G G    +   L+   Y+    I   + +F  + +  T  ++++I   + 
Sbjct: 36  QQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSK 95

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
             + +E+L  Y  M  + +   ++TFS +I+    L +    +  H  +   G+GLD   
Sbjct: 96  FSFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYV 155

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            +ALV FY+K G +  AR VFDKM  K V++WN++I+GY  +G G+EAVELF  M   G+
Sbjct: 156 QAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGV 215

Query: 430 RPNHVTFLAVLSAC-----------------------------------SRSGLSERGWE 454
           +P+  TF+++LSAC                                   SR G   +  E
Sbjct: 216 KPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKARE 275

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF---KTTKNMWAALLTAC 511
           +F SM   + +      +  MI   G  G   +A  L     F   +     + A+L+AC
Sbjct: 276 VFDSMEEKNIVA-----WTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSAC 330

Query: 512 RVNGNLELGK--FAAEKL-YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
              G ++ G+  F   K  YG+ P  + + V ++++   +G L EA + I+    K
Sbjct: 331 AHAGLVDEGRQIFTTMKQEYGLVPS-VEHQVCMVDMLGRAGHLNEAYQFIKNTSPK 385



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 101/204 (49%), Gaps = 6/204 (2%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +EA+ELF +++ + G    SST+ +L+SAC  + +I     V  Y+    F+ ++ +   
Sbjct: 201 KEAVELFFLMQ-DLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTA 259

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ M+ RCG +  AR +FD M E+N+V+   +I+G    G   +A  LF ++  +     
Sbjct: 260 LMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPN 319

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFG--DNVFVSCALIDMYSKCGSIEDAQGV 288
           + TF  ++ A A   L+  G+Q+ +  +K  +G   +V     ++DM  + G + +A   
Sbjct: 320 NVTFVAVLSACAHAGLVDEGRQIFT-TMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQF 378

Query: 289 FDEMS--EKTTVGWNTIIAGYALH 310
               S  E     W  ++    +H
Sbjct: 379 IKNTSPKEPAPAVWTAMLGACKMH 402


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/621 (34%), Positives = 354/621 (57%), Gaps = 30/621 (4%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E+L LFE +  EG      +    ++ AC  L ++ + + +  Y+    F+ D+ +   +
Sbjct: 242 ESLVLFEKMREEGVVPDKVAMV-TVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAM 300

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG +  AR +FD M E+N++S + +IA     G   +A  LF  +         
Sbjct: 301 IDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDK 360

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T A+++ A      ++  +Q+H+ A   G   N+ V+  L+  YS   +++DA G+FD 
Sbjct: 361 ITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDG 420

Query: 292 MSEKTTVGWNTIIAGYA----------------------------LHGYSEEALDLYYEM 323
           M  + +V W+ ++ G+A                              G + E+L L+ +M
Sbjct: 421 MCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKM 480

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
           R+ GV  D      ++  C +L ++  A+     + R  F LD++  +A++D ++K G +
Sbjct: 481 REEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCV 540

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           E AR +FD+M  KNVISW+A+IA YG HG+G +A++LF  ML +G+ PN +T +++L AC
Sbjct: 541 ESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYAC 600

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S +GL E G   F  M  D+ ++    HY C+++LLGR G LDEA  LI     +  + +
Sbjct: 601 SHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGL 660

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           W A L ACR + ++ L + AA  L  ++P+   +Y++L NIY ++G+ ++ A+    + +
Sbjct: 661 WGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQ 720

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
           + L+ +P  +WIEV  + H F  GD +H ++KEIY  +  +  ++   GYVP+   +L D
Sbjct: 721 RRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHD 780

Query: 624 VDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           VDE+ +  +L  HSEKLA+AFGLI T + TP++I+++ R+C DCH   KL++ +TGR I+
Sbjct: 781 VDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVII 840

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           VRDA+RFHHFK+G CSCGDYW
Sbjct: 841 VRDANRFHHFKEGACSCGDYW 861



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/311 (34%), Positives = 170/311 (54%), Gaps = 29/311 (9%)

Query: 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL 196
           ISA +  R++ +V++V +     G   ++ + N+++  +     + DA  LFD M  R+ 
Sbjct: 85  ISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDS 144

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQ 252
           VS ++++ G    GDY+  F  F     E   CG+R    T   +IRA   L+ + +   
Sbjct: 145 VSWSVMVGGFAKVGDYINCFGTF----RELIRCGARPDNYTLPFVIRACRDLKNLQM--- 197

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
                             AL+DMY KC  IEDA+ +FD+M E+  V W  +I GYA  G 
Sbjct: 198 ------------------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGK 239

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
           + E+L L+ +MR+ GV  D      ++  C +L ++  A+     + R  F LD++  +A
Sbjct: 240 ANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTA 299

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           ++D Y+K G +E AR +FD+M  KNVISW+A+IA YG HG+G +A++LF  ML +GM P+
Sbjct: 300 MIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPD 359

Query: 433 HVTFLAVLSAC 443
            +T  ++L AC
Sbjct: 360 KITLASLLYAC 370



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 198/411 (48%), Gaps = 33/411 (8%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+V+C  + DAR LFD+M ER+LV+  ++I G  + G   E+ +LF  + EE        
Sbjct: 202 MYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVA 261

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
             T++ A A L  +   + +     +  F  +V +  A+IDMY+KCG +E A+ +FD M 
Sbjct: 262 MVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRME 321

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
           EK  + W+ +IA Y  HG   +ALDL+  M  SG+  D  T + ++  C    +L   +Q
Sbjct: 322 EKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQ 381

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY---GN 410
            HA    HG   +++  + LV FYS +  ++DA  +FD M  ++ +SW+ ++ G+   G+
Sbjct: 382 VHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGD 441

Query: 411 H-------------------------GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           +                         G   E++ LF++M   G+ P+ V  + V+ AC++
Sbjct: 442 YMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAK 501

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
            G   +   I   + R  K +   +    MI++  + G ++ A  +      K   + W+
Sbjct: 502 LGAMHKARTIDDYIQRK-KFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVIS-WS 559

Query: 506 ALLTACRVNGN--LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
           A++ A   +G     L  F      G+ P K++  V LL   + +G ++E 
Sbjct: 560 AMIAAYGYHGQGRKALDLFPMMLRSGILPNKIT-LVSLLYACSHAGLVEEG 609



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 138/288 (47%), Gaps = 25/288 (8%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           +Q+H+ A   G  +N+ V+  LI  YS   +++DA G+FD M  + +V W+ ++ G+A  
Sbjct: 98  RQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKV 157

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G        + E+   G + D++T   +IR C  L +L+                     
Sbjct: 158 GDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQ--------------------- 196

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
            ALVD Y K   IEDAR +FDKM  +++++W  +I GY   G+  E++ LFE+M   G+ 
Sbjct: 197 MALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVV 256

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           P+ V  + V+ AC++ G   +   I     +  K +   +    MI++  + G ++ A  
Sbjct: 257 PDKVAMVTVVFACAKLGAMHKA-RIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESARE 315

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGN--LELGKFAAEKLYGMEPEKLS 536
           +      K   + W+A++ A   +G     L  F      GM P+K++
Sbjct: 316 IFDRMEEKNVIS-WSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKIT 362


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/557 (36%), Positives = 328/557 (58%), Gaps = 3/557 (0%)

Query: 150 KRVFSYMLSTGFEP-DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
            ++ S  +  G+ P D ++    L M+ + G +  AR LF EMP RN+V+ N ++   + 
Sbjct: 138 PQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVL 197

Query: 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
            G  LE    +  L E        +      A AG   +S+G+Q H   +K GF  +V V
Sbjct: 198 DGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSV 257

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
             +++D Y KC     A+ VFD M  + +V W +++A YA +G  EEA   Y   R SG 
Sbjct: 258 LNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGE 317

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
           +   F  S  +  C  L  L   +  HA  VR     +I   SALVD Y K G +EDA  
Sbjct: 318 EPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQ 377

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSG 447
           +F +   +N+++WNA+I GY + G  + A+ +F+ M+ +G   PN++T + V+++CSR G
Sbjct: 378 IFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGG 437

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
           L++ G+E+F++M     I+PR  HYAC+++LLGR G+ ++A+ +I+G P + + ++W AL
Sbjct: 438 LTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGAL 497

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           L AC+++G  ELG+ AAEKL+ ++P+   N+V+L N++ S+G+  EA ++ + ++  G++
Sbjct: 498 LGACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIK 557

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ 627
             P CSW+  K   HVF + D  H    EI   + ++  ++   GY+P+ +  L D++E+
Sbjct: 558 KDPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEE 617

Query: 628 EQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
           E+    + HSEKLA+AFGLI      P++I+++ RIC DCH A K I+ + GREI+VRD 
Sbjct: 618 EKESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREIIVRDN 677

Query: 687 SRFHHFKDGMCSCGDYW 703
           +RFHHFK   CSCGDYW
Sbjct: 678 NRFHHFKQYQCSCGDYW 694



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 160/327 (48%), Gaps = 12/327 (3%)

Query: 105 VLNKRYREALELFEILEFEGGF-DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP 163
           VL+ R  E +E +  L   GG  +V S+   A  +AC G   +   ++   +++  GFE 
Sbjct: 196 VLDGRPLETIEAYFGLREAGGLPNVVSAC--AFFNACAGAMYLSLGEQFHGFVVKCGFEM 253

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D+ + N ++  + +C     AR +FD M  RN VS   ++A    +G   EAF  +L   
Sbjct: 254 DVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGAR 313

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
               +      ++ +   AGL  + +G+ LH+ A++     N+FV+ AL+DMY KCG +E
Sbjct: 314 RSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVE 373

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG-VKMDHFTFSMIIRIC 342
           DA+ +F E  ++  V WN +I GYA  G ++ AL ++ +M  SG    ++ T   +I  C
Sbjct: 374 DAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSC 433

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVAN--SALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
           +R    +   +    + R  FG++      + +VD   + G  E A  V   M  +  IS
Sbjct: 434 SRGGLTKDGYELFETM-RERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSIS 492

Query: 401 -WNALIAGYGNHGRGE----EAVELFE 422
            W AL+     HG+ E     A +LFE
Sbjct: 493 VWGALLGACKMHGKTELGRIAAEKLFE 519



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 125/289 (43%), Gaps = 7/289 (2%)

Query: 249 VGKQLHSCALKM-GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           +G+  H+ AL++     + F+   L+++YSK      A          T V +   I+G 
Sbjct: 33  LGRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGA 92

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH-AKQAHAGLVRHGF-GL 365
           A HG    AL  +  M   G++ + FTF    +             Q H+  +R G+  +
Sbjct: 93  AQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPV 152

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           D   + A +D Y K GR++ ARH+F +M  +NV++WNA++      GR  E +E +  + 
Sbjct: 153 DPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLR 212

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
             G  PN V+  A  +AC+ +     G E F         +        M++  G+    
Sbjct: 213 EAGGLPNVVSACAFFNACAGAMYLSLG-EQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCA 271

Query: 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEP 532
            +A A+  G   + + + W +++ A   NG  E     +   +  G EP
Sbjct: 272 GKARAVFDGMGVRNSVS-WCSMVAAYAQNGAEEEAFAAYLGARRSGEEP 319



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 102/241 (42%), Gaps = 12/241 (4%)

Query: 81  KESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISA- 139
           K  ++ D    + S   CS +     N    EA        + G    G    D ++S+ 
Sbjct: 273 KARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFA-----AYLGARRSGEEPTDFMVSSA 327

Query: 140 ---CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL 196
              C GL  +   + + +  + +  + ++++ + ++ M+ +CG + DA ++F E P+RNL
Sbjct: 328 LTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNL 387

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQL-H 254
           V+ N +I G    GD   A L+F D+        +  T   +I + +   L   G +L  
Sbjct: 388 VTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFE 447

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYS 313
           +   + G          ++D+  + G  E A  V   M  + ++  W  ++    +HG +
Sbjct: 448 TMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKT 507

Query: 314 E 314
           E
Sbjct: 508 E 508


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/580 (35%), Positives = 340/580 (58%), Gaps = 6/580 (1%)

Query: 130 SSTYDALISACIG-LRSIREVKRVFSYMLSTGFEPDLYMRNRVL---LMHVRCGMMIDAR 185
           ++TY + + +C+    S++E+K++ ++ + T  + DL +  +++     +     M  A 
Sbjct: 22  NTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLINSCTQNPTTASMDYAH 81

Query: 186 RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
           +LF+ +P+ ++V  N +  G   S   L+A  LF+            TF ++++A    +
Sbjct: 82  QLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVVAK 141

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
               GKQLH  A+K+G  +N +V   LI+MY+ C  ++ AQ VFDE+ E   V +N II 
Sbjct: 142 AFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIIT 201

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
           GYA      EAL L+ +++   +K +  T   ++  C  L +L+  K  H  + ++G   
Sbjct: 202 GYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDK 261

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
            +  N+AL+D Y+K G ++ A  VF+ M  ++  +W+A+I  Y  HG+G++ + +FE+M 
Sbjct: 262 YVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMA 321

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
              ++P+ +TFL +L ACS +GL + G+  F SMS  + I P   HY CM++LLGR GLL
Sbjct: 322 RAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLL 381

Query: 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
            EA+  I   P K T  +W  LL++C  +GNLEL K    ++  ++     +YV+L N+ 
Sbjct: 382 HEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLC 441

Query: 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
             +GK ++   + + +  KG   +P CS IEV    H F SGD  H  +  ++R +D ++
Sbjct: 442 ARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALDELV 501

Query: 606 LEISKHGYVPEEKTLL-PDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
            E+   GYVP+   ++ PD++++E+ + L YHSEKLA++FGL+NT   T +++V++ R+C
Sbjct: 502 KELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVVKNLRVC 561

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCH+A KLI+ +  REI++RD  RFHHFKDG CSCGDYW
Sbjct: 562 GDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/652 (33%), Positives = 355/652 (54%), Gaps = 38/652 (5%)

Query: 89  QMKKPSAGICSQ-IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
            + +P    CS  I          EA+ L+  L   G     +S +  +  AC       
Sbjct: 91  NIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARG-IKPHNSVFLTVAKACGASGDAS 149

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
            VK V    +  G   D ++ N ++  + +C  +  ARR+FD++  +++VS   + +  +
Sbjct: 150 RVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYV 209

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
           + G       +F ++        S T ++++ A + L+ +  G+ +H  A++ G  +NVF
Sbjct: 210 NCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVF 269

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY----------AL-------- 309
           V  AL+ +Y++C S++ A+ VFD M  +  V WN ++  Y          AL        
Sbjct: 270 VCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKG 329

Query: 310 -----------------HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
                            +G +E+A+++  +M++ G K +  T S  +  C+ L SL   K
Sbjct: 330 VEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRMGK 389

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           + H  + RH    D+   +ALV  Y+K G +  +R+VFD +  K+V++WN +I     HG
Sbjct: 390 EVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAMHG 449

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
            G E + LFE ML +G++PN VTF  VLS CS S L E G +IF SM RDH ++P A HY
Sbjct: 450 NGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDANHY 509

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532
           ACM+++  R G L EA+  I+  P + T + W ALL ACRV  N+EL K +A KL+ +EP
Sbjct: 510 ACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEIEP 569

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHV 592
               NYV L NI  ++    EA+E    ++ +G+   P CSW++V  + H F+ GD++++
Sbjct: 570 NNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDKNNM 629

Query: 593 QTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDW 651
           ++ +IY  +D +  ++   GY P+   +L D+D++E+   L  HSEKLAVAFG++N +  
Sbjct: 630 ESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESLCSHSEKLAVAFGILNLNGQ 689

Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + +++ ++ RIC DCHNAIK ++ V G  I+VRD+ RFHHF++G CSC D W
Sbjct: 690 SSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNCSCQDLW 741



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 154/311 (49%), Gaps = 4/311 (1%)

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
           R+L   +  G    A++LFD +P+ +  +C+ +I+     G   EA  L+  L       
Sbjct: 71  RLLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKP 130

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
            +  F T+ +A       S  K++H  A++ G   + F+  ALI  Y KC  +E A+ VF
Sbjct: 131 HNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVF 190

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           D++  K  V W ++ + Y   G     L ++ EM  +GVK +  T S I+  C+ L  L+
Sbjct: 191 DDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLK 250

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             +  H   VRHG   ++   SALV  Y++   ++ AR VFD M  ++V+SWN ++  Y 
Sbjct: 251 SGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYF 310

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS----RDHKI 465
            +   ++ + LF QM   G+  +  T+ AV+  C  +G +E+  E+ + M     + ++I
Sbjct: 311 TNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQI 370

Query: 466 KPRAMHYACMI 476
              +   AC I
Sbjct: 371 TISSFLPACSI 381


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/604 (34%), Positives = 358/604 (59%), Gaps = 35/604 (5%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   V N  Y +AL +F+ +   G  D    TY  ++ A  G   +    ++ + ++  G
Sbjct: 109 IRSYVNNHLYSDALLVFKNMAGHG-IDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVG 167

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            + ++++ N ++ M+ +CG +++A R+ D+MP R++VS N ++AG   +G + +A    L
Sbjct: 168 LDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDA----L 223

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           ++ +E    G       ++  AG     +    ++C   + F   +F+            
Sbjct: 224 EVCKEMELLG-------LKPDAGTMASLLPAVTNTCLDNVSFVKEMFM------------ 264

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
                     +++ K+ V WN +IA Y  +    EA+D++ +M D  V  D  + + ++ 
Sbjct: 265 ----------KLANKSLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLP 314

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C  L++L   ++ H  +VR     +++  +AL+D Y+K G +E AR VFD+M  ++V+S
Sbjct: 315 ACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVS 374

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           W ++I+ YG +G+G +AV LF +M   G+ P+ + F++VLSACS +GL + G   F+ M+
Sbjct: 375 WTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMT 434

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
            + KI PR  H+ CM++LLGR G +DEA+  I+  P +  + +W ALL+ACRV  N+ +G
Sbjct: 435 EECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIG 494

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
             AA++L+ + PE+   YV+L NIY  +G+ ++   V   ++ KG++ +P  S  E+  +
Sbjct: 495 LLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNR 554

Query: 581 PHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKL 639
            H FL+GDQSH Q+K+IY ++D  + ++ + GYVPE  + L DV+E+++   L+ HSEKL
Sbjct: 555 VHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKL 614

Query: 640 AVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSC 699
           A+AF ++NT+  +P++I ++ R+C DCH A KLI+ + GREI +RD +RFHHF +G+CSC
Sbjct: 615 AIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSC 674

Query: 700 GDYW 703
           GDYW
Sbjct: 675 GDYW 678



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 197/387 (50%), Gaps = 38/387 (9%)

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
           +++  +  CG     R +FDE+P++N+V  N++I   +++  Y +A L+F ++     D 
Sbjct: 76  KLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDP 135

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              T+  +++AS+G E + VG Q+H+  +++G   NVFV   LI MY KCG + +A  V 
Sbjct: 136 DHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVL 195

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           D+M  +  V WN+++AG A +G  ++AL++  EM   G+K D  T          +ASL 
Sbjct: 196 DQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGT----------MASL- 244

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
                          L  V N+ L         +   + +F K+  K+++SWN +IA Y 
Sbjct: 245 ---------------LPAVTNTCL-------DNVSFVKEMFMKLANKSLVSWNVMIAVYM 282

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
           N+    EAV++F QM  + + P+ ++  +VL AC        G  I + + R  +++P  
Sbjct: 283 NNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVR-KRLQPNL 341

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKL 527
           +    +I++  + G L+ A  +     F+   + W ++++A  +NG     +  F+  + 
Sbjct: 342 LLENALIDMYAKCGCLEYAREVFDQMKFRDVVS-WTSMISAYGMNGKGRDAVSLFSRMQD 400

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            G+ P+ ++ +V +L+  + +G L E 
Sbjct: 401 LGLNPDSIA-FVSVLSACSHAGLLDEG 426



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 167/372 (44%), Gaps = 57/372 (15%)

Query: 251 KQLHS-CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           K+LHS   +      N  +   L+  Y+ CG     + +FDE+ +K  V +N +I  Y  
Sbjct: 55  KKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYVN 114

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +    +AL ++  M   G+  DH+T+  +++  +    L    Q HA +VR G  L++  
Sbjct: 115 NHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFV 174

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            + L+  Y K G + +A  V D+M C++V+SWN+L+AG   +G+ ++A+E+ ++M L G+
Sbjct: 175 GNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGL 234

Query: 430 RPNHVTFLAVLSACSRSGLSERGW--EIFQSMSR-------------------------- 461
           +P+  T  ++L A + + L    +  E+F  ++                           
Sbjct: 235 KPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVDIF 294

Query: 462 ----DHKIKPRAMHYACMIE--------LLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509
               DH + P A+  A ++         LLGR   + E     R  P    +N    +  
Sbjct: 295 LQMEDHAVDPDAISIASVLPACGDLSALLLGRR--IHEYVVRKRLQPNLLLENALIDMYA 352

Query: 510 ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR-- 567
            C   G LE   +A E    M+   + ++  +++ Y  +GK ++A  +   ++  GL   
Sbjct: 353 KC---GCLE---YAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPD 406

Query: 568 ------MLPACS 573
                 +L ACS
Sbjct: 407 SIAFVSVLSACS 418


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 205/529 (38%), Positives = 316/529 (59%), Gaps = 1/529 (0%)

Query: 176 VRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFA 235
           ++ G +  AR LFD+MP RN+ + N ++AG+ + G   ++   FL +  E          
Sbjct: 119 IKNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRREGMHPDEFGLG 178

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
           ++ R  AGL  +  G+Q+H+  ++ G   ++ V  +L  MY +CG + + + V   +   
Sbjct: 179 SVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSL 238

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
           T V +NT IAG   +G SE AL+ +  MR   V  D  TF   I  C+ LA+L   +Q H
Sbjct: 239 TIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVVTFVSAISCCSDLAALAQGQQVH 298

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
           A +++ G    +   ++LV  YS+ G + D+  V+D     ++   +A+I+  G HG+G 
Sbjct: 299 AQVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGH 358

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
           +AVELF+QM+  G  PN VTFLA+L ACS SGL + G E F+ M++ +  +P   HY C+
Sbjct: 359 KAVELFKQMMNGGAEPNEVTFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCI 418

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535
           ++LLGR G LDEA ALI   P +    +W  LL+AC+   N ++ +  AE++   +P   
Sbjct: 419 VDLLGRSGCLDEAEALILSMPVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDPRDS 478

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTK 595
           + YV+L NI  +S +  +  EV + +R K +R  P  SW+E K Q H F +GD+SH +  
Sbjct: 479 APYVLLSNIRATSKRWGDVTEVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSHPRQG 538

Query: 596 EIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPL 654
           EI   +  MM +I + GY P+   +  D++++E+ V L++HSEKLA+AF  +N  +  P+
Sbjct: 539 EIDEYLKEMMGKIRQCGYAPDMTMVFHDMEDEEKEVSLTHHSEKLAIAFAFLNLPEGVPI 598

Query: 655 QIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +++++ R+C DCH AIKLI+ VTGREIVVRD SRFHHF+DG CSCGDYW
Sbjct: 599 RVMKNLRVCDDCHVAIKLISQVTGREIVVRDVSRFHHFRDGRCSCGDYW 647



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/302 (22%), Positives = 142/302 (47%), Gaps = 11/302 (3%)

Query: 112 EALELFEILEFEG----GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
           ++L+ F  +  EG     F +GS     +   C GL  +   ++V +Y++ +G + D+ +
Sbjct: 157 DSLQFFLAMRREGMHPDEFGLGS-----VFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCV 211

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            N +  M++RCG + +   +   +P   +VS N  IAG   +GD   A   F  +     
Sbjct: 212 GNSLAHMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEV 271

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
                TF + I   + L  ++ G+Q+H+  +K G    V V  +L+ MYS+CG + D++ 
Sbjct: 272 APDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVITSLVHMYSRCGCLGDSER 331

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           V+D          + +I+    HG   +A++L+ +M + G + +  TF  ++  C+    
Sbjct: 332 VYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAEPNEVTFLALLYACSHSGL 391

Query: 348 LEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALI 405
            +   +    + + +GF   +   + +VD   + G +++A  +   M  + + + W  L+
Sbjct: 392 KDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEALILSMPVRADGVIWKTLL 451

Query: 406 AG 407
           + 
Sbjct: 452 SA 453



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 64/132 (48%), Gaps = 7/132 (5%)

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
           D   FS I R C  +  L   +Q HA     G   D    + L+  Y+  G +  ARH+F
Sbjct: 44  DASLFSHIFRACRAIPLL---RQLHAFAATSGAAADRFTTNNLLLAYADLGDLPTARHLF 100

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
           + +  +NV+SWN LI G   +G    A ELF++M       N  T+ A+++  +  GL E
Sbjct: 101 EGISKRNVMSWNILIGGCIKNGDLGSARELFDKMPTR----NVATWNAMVAGLTNVGLDE 156

Query: 451 RGWEIFQSMSRD 462
              + F +M R+
Sbjct: 157 DSLQFFLAMRRE 168


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/531 (36%), Positives = 318/531 (59%), Gaps = 1/531 (0%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+V+C  +  ARR+FD + + +++S   +IA  I   +  E   LF+ +  E       T
Sbjct: 271 MYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEIT 330

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
             ++++       + +GK LH+  L+ GF  ++ ++ A IDMY KCG +  A+ VFD   
Sbjct: 331 MLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFK 390

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
            K  + W+ +I+ YA +   +EA D++  M   G++ +  T   ++ IC +  SLE  K 
Sbjct: 391 SKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKW 450

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            H+ + + G   D++  ++ VD Y+  G I+ A  +F +   +++  WNA+I+G+  HG 
Sbjct: 451 IHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGH 510

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
           GE A+ELFE+M   G+ PN +TF+  L ACS SGL + G  +F  M  +    P+  HY 
Sbjct: 511 GEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYG 570

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533
           CM++LLGR GLLDEA  LI+  P +    ++ + L AC+++ N++LG++AA++   +EP 
Sbjct: 571 CMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPH 630

Query: 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQ 593
           K    V++ NIY S+ +  + A + R ++ +G+   P  S IEV    H F+ GD+ H  
Sbjct: 631 KSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPD 690

Query: 594 TKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWT 652
            K++Y  +D M  ++   GY P+   +L ++D E++   L+YHSEKLA+A+GLI+T+   
Sbjct: 691 AKKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPGV 750

Query: 653 PLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           P++IV++ R+C DCHNA KL++ + GREI+VRD +RFHHFK+G CSC DYW
Sbjct: 751 PIRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 152/344 (44%), Gaps = 48/344 (13%)

Query: 122 FEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD----------------- 164
           F+G       ++ A+I+A I   ++ E  R+F  ML  G  P+                 
Sbjct: 285 FDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGAL 344

Query: 165 --------LYMRNRVLL----------MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
                     +RN   L          M+ +CG +  AR +FD    ++L+  + +I+  
Sbjct: 345 ELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSY 404

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCG----SRTFATMIRASAGLELISVGKQLHSCALKMGF 262
             +    EAF    D++   + CG     RT  +++   A    + +GK +HS   K G 
Sbjct: 405 AQNNCIDEAF----DIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGI 460

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             ++ +  + +DMY+ CG I+ A  +F E +++    WN +I+G+A+HG+ E AL+L+ E
Sbjct: 461 KGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEE 520

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH-GFGLDIVANSALVDFYSKWG 381
           M   GV  +  TF   +  C+    L+  K+    +V   GF   +     +VD   + G
Sbjct: 521 MEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAG 580

Query: 382 RIEDARHVFDKMLCK-NVISWNALIAG---YGNHGRGEEAVELF 421
            +++A  +   M  + N+  + + +A    + N   GE A + F
Sbjct: 581 LLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQF 624



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 126/307 (41%), Gaps = 40/307 (13%)

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I  Y  +    +A  +Y  MR +  ++D+F    +++ C  + S    ++ H  +V++G
Sbjct: 95  LITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKNG 154

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
           F  D+   +AL+  YS+ G +  AR +FDK+  K+V+SW+ +I  Y   G  +EA++L  
Sbjct: 155 FHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLLR 214

Query: 423 QMLLNGMRPNHVTFLAVLSA----------------------CSRSGLS----------- 449
            M +  ++P+ +  +++                         C +SG+            
Sbjct: 215 DMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVK 274

Query: 450 ----ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
                    +F  +S+   I   AM  A +      EG+    F  + G      +    
Sbjct: 275 CENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGV--RLFVKMLGEGMFPNEITML 332

Query: 506 ALLTACRVNGNLELGK-FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           +L+  C   G LELGK   A  L       L      +++Y   G ++ A  V  + + K
Sbjct: 333 SLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSK 392

Query: 565 GLRMLPA 571
            L M  A
Sbjct: 393 DLMMWSA 399



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 13/219 (5%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEG-GFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           + I     N    EA ++F  +   G G      T  +L+  C    S+   K + SY+ 
Sbjct: 399 AMISSYAQNNCIDEAFDIF--VHMTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYID 456

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
             G + D+ ++   + M+  CG +  A RLF E  +R++   N +I+G    G    A  
Sbjct: 457 KQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAA-- 514

Query: 218 LFLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQL-HSCALKMGFGDNVFVSCAL 272
             L+L+EE    G      TF   + A +   L+  GK+L H    + GF   V     +
Sbjct: 515 --LELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCM 572

Query: 273 IDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALH 310
           +D+  + G +++A  +   M  +  +  + + +A   LH
Sbjct: 573 VDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLH 611


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/610 (35%), Positives = 349/610 (57%), Gaps = 11/610 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I     N  Y +A+ELF  +  EG  ++ S+T  +++ AC  L  +   + V  Y + 
Sbjct: 267 SMISGCTSNGLYDKAIELFVRMWLEGE-ELDSATLLSVLPACAELHLLFLGRVVHGYSVK 325

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           TGF     + N +L M+  C       ++F  M ++N+VS   +I     +G Y +   L
Sbjct: 326 TGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGL 385

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F ++  E +        + + A AG EL+  GK +H  A++ G    + V+ AL++MY K
Sbjct: 386 FQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVK 445

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG++E+A+ +FD +  K  + WNT+I GY+ +  + EA  L+ EM    ++ +  T + I
Sbjct: 446 CGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LRPNAVTMTCI 504

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +     L+SLE  ++ HA  +R G+  D    +AL+D Y K G +  AR +FD++  KN+
Sbjct: 505 LPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNL 564

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           ISW  ++AGYG HGRG +A+ LFEQM ++G+ P+  +F A+L ACS SGL + GW  F +
Sbjct: 565 ISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDA 624

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M ++HKI+PR  HY CM++LL   G L EA+  I   P +   ++W +LL  CR++ N++
Sbjct: 625 MRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVK 684

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK----GLRMLPACSW 574
           L +  AE+++ +EPE    YV+L NIY  +    E  E +R L+ K    GLR    CSW
Sbjct: 685 LAEEVAERVFELEPENTGYYVLLANIYAEA----ERWEAVRKLKNKIGGRGLRENTGCSW 740

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLS 633
           IE K + HVF++ +++H Q   I   ++ +   + + G+ P++K  L   D       L 
Sbjct: 741 IEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRMQEEGHDPKKKYALMGADNAVHGEALC 800

Query: 634 YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
            HS KLAVAFG++N S+   +++ ++ R+C  CH A K I+ +  REI++RD++RFHHF+
Sbjct: 801 GHSSKLAVAFGVLNLSEGRLIRVTKNSRVCSHCHEAAKFISKMCSREIILRDSNRFHHFE 860

Query: 694 DGMCSCGDYW 703
            G CSC  YW
Sbjct: 861 QGRCSCRGYW 870



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 133/469 (28%), Positives = 221/469 (47%), Gaps = 43/469 (9%)

Query: 134 DALISACI-----GLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLF 188
           DA   +C+     GL SI + + V   +   GF     + N ++  + +     DA  +F
Sbjct: 195 DAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVF 254

Query: 189 DEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS 248
           D MP R+++S N +I+G   +G Y +A  LF+ +W E  +  S T  +++ A A L L+ 
Sbjct: 255 DGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLF 314

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           +G+ +H  ++K GF     ++  L+DMYS C        +F  M +K  V W  +I  Y 
Sbjct: 315 LGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYT 374

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
             G  ++   L+ EM   G + D F  +  +        L+H K  H   +R+G    + 
Sbjct: 375 RAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEKVLA 434

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             +AL++ Y K G +E+A+ +FD ++ K++ISWN LI GY  +    EA  LF +MLL  
Sbjct: 435 VTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ- 493

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR--------------DHKIKPRAM---- 470
           +RPN VT   +L A +     ERG E+     R              D  +K  A+    
Sbjct: 494 LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLAR 553

Query: 471 ------------HYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWAALLTACRVNG 515
                        +  M+   G  G   +A AL   +R +        ++A+L AC  +G
Sbjct: 554 RLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSG 613

Query: 516 NLELG-KF--AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
             + G +F  A  K + +EP +L +Y  ++++  ++G LKEA E I ++
Sbjct: 614 LRDEGWRFFDAMRKEHKIEP-RLKHYTCMVDLLINTGNLKEAYEFIDSM 661



 Score =  156 bits (395), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 128/461 (27%), Positives = 217/461 (47%), Gaps = 27/461 (5%)

Query: 93  PSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRV 152
           P++ +   I++L  +    EAL L       G   V   +Y A++  C  +RS+   KR 
Sbjct: 60  PTSDVNLHIQRLCRSGDLEEALGLL------GSDGVDDRSYGAVLQLCSEVRSLEGGKRA 113

Query: 153 FSYMLSTGFEPD---LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSC-NMIIAGMID 208
              + ++    D     +  +++LM+++CG + +ARR+FDEMP+ + V     +++G   
Sbjct: 114 HFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAK 173

Query: 209 SGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGFGD 264
           +GD  E  LLF     +   CG R    T + +++  AGL  I  G+ +H    K+GFG 
Sbjct: 174 AGDLREGVLLF----RKMHCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGS 229

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
              V  AL+  Y+K    +DA  VFD M  +  + WN++I+G   +G  ++A++L+  M 
Sbjct: 230 QCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMW 289

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
             G ++D  T   ++  C  L  L   +  H   V+ GF       + L+D YS      
Sbjct: 290 LEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWR 349

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
               +F  M+ KNV+SW A+I  Y   G  ++   LF++M L G RP+     + L A +
Sbjct: 350 STNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFA 409

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM- 503
            + L + G  +     R+   K  A+  A M E+  + G ++EA  +  G     +K+M 
Sbjct: 410 GNELLKHGKSVHGYAIRNGMEKVLAVTNALM-EMYVKCGNMEEAKLIFDGV---VSKDMI 465

Query: 504 -WAALLTACRVNGNLELGKFA--AEKLYGMEPEKLSNYVVL 541
            W  L+     N NL    F+   E L  + P  ++   +L
Sbjct: 466 SWNTLIGGYSRN-NLANEAFSLFTEMLLQLRPNAVTMTCIL 505


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/603 (36%), Positives = 342/603 (56%), Gaps = 3/603 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I +L  + +  +AL  F  +   G +     T+ A++ AC     + E +++ + +    
Sbjct: 172 INQLSRSNKPFQALTFFNRMRTTGIYP-NHFTFSAILPACAHAALLSEGQQIHALIHKHC 230

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F  D ++   +L M+ +CG M+ A  +FDEMP RNLVS N +I G + +  Y  A  +F 
Sbjct: 231 FLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFR 290

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           ++     D    + ++++ A AGL  +  GKQ+H   +K G    V+V  +L+DMY KCG
Sbjct: 291 EVLSLGPD--QVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCG 348

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
             EDA  +F    ++  V WN +I G       E+A   +  M   GV+ D  ++S +  
Sbjct: 349 LFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFH 408

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
               +A+L      H+ +++ G   +   +S+LV  Y K G + DA  VF +    NV+ 
Sbjct: 409 ASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVC 468

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           W A+I  +  HG   EA++LFE+ML  G+ P ++TF++VLSACS +G  + G++ F SM+
Sbjct: 469 WTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMA 528

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
             H IKP   HYACM++LLGR G L+EA   I   PF+    +W ALL AC  + N+E+G
Sbjct: 529 NVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMG 588

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
           +  AE+L+ +EP+   NY++L NIY   G L+EA EV R +   G+R    CSWI+VK +
Sbjct: 589 REVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNR 648

Query: 581 PHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLA 640
             VF + D+SH +T+EIY  + ++   I + GYV E +     V+  E++ L  HSEKLA
Sbjct: 649 TFVFNANDRSHSRTQEIYGMLQKLKELIKRRGYVAETQFATNSVEGSEEQSLWCHSEKLA 708

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AFGL+     +P++I ++ R C DCH  +K  + +  REI+VRD +RFH F +G CSC 
Sbjct: 709 LAFGLLVLPPGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCM 768

Query: 701 DYW 703
           DYW
Sbjct: 769 DYW 771



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/469 (26%), Positives = 221/469 (47%), Gaps = 38/469 (8%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE-- 193
           L++    L+S++   ++ S +++T     L   N +LL++ +CG +     LF+  P   
Sbjct: 103 LLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPS 162

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL 253
            N+V+   +I  +  S    +A   F  +          TF+ ++ A A   L+S G+Q+
Sbjct: 163 TNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQI 222

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           H+   K  F ++ FV+ AL+DMY+KCGS+  A+ VFDEM  +  V WN++I G+  +   
Sbjct: 223 HALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLY 282

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF-GLDIVANSA 372
             A+ ++ E+   G   D  + S ++  C  L  L+  KQ H  +V+ G  GL  V NS 
Sbjct: 283 GRAIGVFREVLSLGP--DQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNS- 339

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           LVD Y K G  EDA  +F     ++V++WN +I G       E+A   F+ M+  G+ P+
Sbjct: 340 LVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPD 399

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
             ++ ++  A +      +G  I   + +   +K   +  + ++ + G+ G + +A+ + 
Sbjct: 400 EASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRIS-SSLVTMYGKCGSMLDAYQV- 457

Query: 493 RGAPFKTTKNM----WAALLTACRVNG--NLELGKFAAEKLYGMEPEKLSNYVVL----- 541
               F+ TK      W A++T    +G  N  +  F      G+ PE ++   VL     
Sbjct: 458 ----FRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSH 513

Query: 542 --------------LNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
                          N++N    L+  A ++  L R G R+  AC +IE
Sbjct: 514 TGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVG-RLEEACRFIE 561


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/607 (34%), Positives = 360/607 (59%), Gaps = 4/607 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I     N  Y EAL+ F  L+ +        +  ++++A   L  +   K + +Y + 
Sbjct: 183 SMIAGFTQNGLYNEALQFFCGLQ-DANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMK 241

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
              + +L + N ++ M+ +C  +  A  +FD+M  ++L+S   +IA    +  + EA  L
Sbjct: 242 NWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKL 301

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
              +  +  D  +    + + A +GL  +S  K++H   LK G  D + +   +ID+Y+ 
Sbjct: 302 LRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSD-LMMQNMIIDVYAD 360

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG+I  A  +F+ +  K  V W ++I+ Y  +G + EAL ++Y M+++ V+ D  T   I
Sbjct: 361 CGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSI 420

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +     L++L   K+ H  + R GF L+    ++LVD Y+  G +E+A  VF     K++
Sbjct: 421 LSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSL 480

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           + W  +I  YG HGRG+ AVELF  M    + P+H+TFLA+L ACS SGL   G  + ++
Sbjct: 481 VLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLET 540

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M   ++++P   HYAC+++LLGR   L+EA+  ++    + T  +W A L ACR++ N +
Sbjct: 541 MKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKK 600

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           LG+ AA+KL  ++P+   +YV++ N++ +SG+ K+  EV   ++  GL+  P CSWIEV 
Sbjct: 601 LGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVG 660

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH-GYVPEEKTLLPDVDEQEQRVLSY-HS 636
            + H FL  D+SH ++ +IY+K+ ++  ++ K  GYVP+ K +L +V ++E+  + Y HS
Sbjct: 661 NKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHS 720

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           E+LA+A+GL++TS+ TP++I ++ R+C DCH   KL++    RE++VRDASRFHHF+DG+
Sbjct: 721 ERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGV 780

Query: 697 CSCGDYW 703
           CSCGD+W
Sbjct: 781 CSCGDFW 787



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 169/321 (52%), Gaps = 1/321 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G    S T+  ++ AC  +  I     +   ++  G++  +++ N ++ M+ +C  ++ A
Sbjct: 5   GVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGA 64

Query: 185 RRLFDEMPERN-LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           R+LFD M ERN +VS N II+    +G  +EA  LF ++ +      + T    ++A   
Sbjct: 65  RKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACED 124

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
                +G ++H+  LK     +V+V+ AL+ M+ + G +  A  +FDE+ EK  + WN++
Sbjct: 125 SSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSM 184

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           IAG+  +G   EAL  +  ++D+ +K D  +   I+    RL  L + K+ HA  +++  
Sbjct: 185 IAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWL 244

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             ++   + L+D YSK   +  A  VFDKM+ K++ISW  +IA Y  +    EA++L  +
Sbjct: 245 DSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRK 304

Query: 424 MLLNGMRPNHVTFLAVLSACS 444
           +   GM  + +   + L ACS
Sbjct: 305 VQTKGMDVDTMMIGSTLLACS 325



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 117/232 (50%), Gaps = 9/232 (3%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           MR  GV  D FTF  +++ C  +  +    + H  +++ G+   +   ++LV  Y+K   
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 383 IEDARHVFDKMLCKN-VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
           I  AR +FD+M  +N V+SWN++I+ Y  +G+  EA+ LF +M   G+  N  T +A L 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           AC  S   + G EI  ++ + +++    +  A ++ +  R G +  A A I     +   
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANA-LVAMHVRFGKMSYA-ARIFDELDEKDN 178

Query: 502 NMWAALLTACRVNG--NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
             W +++     NG  N  L  F   +   ++P+++S    L++I  +SG+L
Sbjct: 179 ITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVS----LISILAASGRL 226


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/607 (34%), Positives = 352/607 (57%), Gaps = 5/607 (0%)

Query: 99   SQIEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
            S I   V+N     ALE F ++L    G D+  +T    ++AC  + S+   + +    +
Sbjct: 624  SMISGCVMNGFSHSALEFFVQMLILRVGVDL--ATLVNSVAACANVGSLSLGRALHGQGV 681

Query: 158  STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
               F  ++   N +L M+ +CG + DA + F++M ++ +VS   +IA  +  G Y +A  
Sbjct: 682  KACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIR 741

Query: 218  LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
            LF ++  +       +  +++ A A    +  G+ +H+   K      + VS AL+DMY+
Sbjct: 742  LFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYA 801

Query: 278  KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
            KCGS+E+A  VF ++  K  V WNT+I GY+ +    EAL L+ EM+    + D  T + 
Sbjct: 802  KCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMAC 860

Query: 338  IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
            ++  C  LA+LE  +  H  ++R+G+  ++   +AL+D Y K G +  AR +FD +  K+
Sbjct: 861  LLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKD 920

Query: 398  VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
            +I+W  +I+G G HG G EA+  F++M + G++P+ +TF ++L ACS SGL   GW  F 
Sbjct: 921  LITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFN 980

Query: 458  SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
            SM  +  ++P+  HYACM++LL R G L +A+ LI   P K    +W ALL  CR++ ++
Sbjct: 981  SMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDV 1040

Query: 518  ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
            EL +  AE ++ +EP+    YV+L NIY  + K +E  ++   + ++GL+  P CSWIEV
Sbjct: 1041 ELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEV 1100

Query: 578  KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHS 636
            + +   F+S D +H Q K I+  ++ + +++   G+ P+ +  L +  + E+ V L  HS
Sbjct: 1101 QGKFTTFVSADTAHPQAKSIFSLLNNLRIKMKNEGHSPKMRYALINAGDMEKEVALCGHS 1160

Query: 637  EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
            EKLA+AFG++N      +++ ++ R+C DCH   K ++  T REI++RD++RFHHFKDG 
Sbjct: 1161 EKLAMAFGILNLPSGRTIRVAKNLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHFKDGF 1220

Query: 697  CSCGDYW 703
            CSC D+W
Sbjct: 1221 CSCRDFW 1227



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 198/382 (51%), Gaps = 2/382 (0%)

Query: 118 EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR 177
           E+L      ++  + Y +++  C   + ++E K V S + S G   +  +  +++ M+V 
Sbjct: 439 ELLRMSQKSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVS 498

Query: 178 CGMMIDARRLFDEMPERNLVSC-NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
           CG + + RR+FD +   N V   N++++     GDY E+  LF  + +      S TF+ 
Sbjct: 499 CGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSC 558

Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
           +++  A L  +   K++H C  K+GFG    V  +LI  Y K G ++ A  +FDE+ ++ 
Sbjct: 559 ILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRD 618

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
            V WN++I+G  ++G+S  AL+ + +M    V +D  T    +  C  + SL   +  H 
Sbjct: 619 VVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHG 678

Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
             V+  F  +++ N+ L+D YSK G + DA   F+KM  K V+SW +LIA Y   G  ++
Sbjct: 679 QGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDD 738

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
           A+ LF +M   G+ P+  +  +VL AC+     ++G ++   + +++      +  A M 
Sbjct: 739 AIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALM- 797

Query: 477 ELLGREGLLDEAFALIRGAPFK 498
           ++  + G ++EA+ +    P K
Sbjct: 798 DMYAKCGSMEEAYLVFSQIPVK 819


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/556 (37%), Positives = 328/556 (58%), Gaps = 3/556 (0%)

Query: 151 RVFSYMLSTGFEP-DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           ++ S  +  G+ P D ++    L M+ + G +  AR LF EMP RN+V+ N ++   +  
Sbjct: 32  QIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLD 91

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
           G  LE    +  L E        +      A AG   +S+G+Q H   +K GF  +V V 
Sbjct: 92  GRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVL 151

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            +++D Y KC     A+ VFD M  + +V W +++A YA +G  EEA   Y   R SG +
Sbjct: 152 NSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEE 211

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
              F  S  +  C  L  L   +  HA  VR     +I   SALVD Y K G +EDA  +
Sbjct: 212 PTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQI 271

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGL 448
           F +   +N+++WNA+I GY + G  + A+ +F+ M+ +G   PN++T + V+++CSR GL
Sbjct: 272 FYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGL 331

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
           ++ G+E+F++M     I+PR  HYAC+++LLGR G+ ++A+ +I+G P + + ++W ALL
Sbjct: 332 TKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALL 391

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
            AC+++G  ELG+ AAEKL+ ++P+   N+V+L N++ S+G+  EA ++ + ++  G++ 
Sbjct: 392 GACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKK 451

Query: 569 LPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE 628
            P CSW+  K   HVF + D  H    EI   + ++  ++   GY+P+ +  L D++E+E
Sbjct: 452 DPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEEE 511

Query: 629 QRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDAS 687
           +    + HSEKLA+AFGLI      P++I+++ RIC DCH A K I+ + GREI+VRD +
Sbjct: 512 KESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREIIVRDNN 571

Query: 688 RFHHFKDGMCSCGDYW 703
           RFHHFK   CSCGDYW
Sbjct: 572 RFHHFKQYQCSCGDYW 587



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 160/327 (48%), Gaps = 12/327 (3%)

Query: 105 VLNKRYREALELFEILEFEGGF-DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP 163
           VL+ R  E +E +  L   GG  +V S+   A  +AC G   +   ++   +++  GFE 
Sbjct: 89  VLDGRPLETIEAYFGLREAGGLPNVVSAC--AFFNACAGAMYLSLGEQFHGFVVKCGFEM 146

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D+ + N ++  + +C     AR +FD M  RN VS   ++A    +G   EAF  +L   
Sbjct: 147 DVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGAR 206

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
               +      ++ +   AGL  + +G+ LH+ A++     N+FV+ AL+DMY KCG +E
Sbjct: 207 RSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVE 266

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG-VKMDHFTFSMIIRIC 342
           DA+ +F E  ++  V WN +I GYA  G ++ AL ++ +M  SG    ++ T   +I  C
Sbjct: 267 DAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSC 326

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVAN--SALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
           +R    +   +    + R  FG++      + +VD   + G  E A  V   M  +  IS
Sbjct: 327 SRGGLTKDGYELFETM-RERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSIS 385

Query: 401 -WNALIAGYGNHGRGE----EAVELFE 422
            W AL+     HG+ E     A +LFE
Sbjct: 386 VWGALLGACKMHGKTELGRIAAEKLFE 412



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/241 (21%), Positives = 102/241 (42%), Gaps = 12/241 (4%)

Query: 81  KESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISA- 139
           K  ++ D    + S   CS +     N    EA        + G    G    D ++S+ 
Sbjct: 166 KARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFA-----AYLGARRSGEEPTDFMVSSA 220

Query: 140 ---CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL 196
              C GL  +   + + +  + +  + ++++ + ++ M+ +CG + DA ++F E P+RNL
Sbjct: 221 LTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNL 280

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQL-H 254
           V+ N +I G    GD   A L+F D+        +  T   +I + +   L   G +L  
Sbjct: 281 VTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFE 340

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYS 313
           +   + G          ++D+  + G  E A  V   M  + ++  W  ++    +HG +
Sbjct: 341 TMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKT 400

Query: 314 E 314
           E
Sbjct: 401 E 401


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/550 (38%), Positives = 331/550 (60%), Gaps = 8/550 (1%)

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F  D Y  + +L M+  C   +DARR FDE+P+ N V    + +G + +     +  LF 
Sbjct: 125 FPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFR 184

Query: 221 DLWEEFSDCGSRTFATMI--RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
            +    S       A ++   ASA +    V   LH+   K+GF  N  V   ++D Y+K
Sbjct: 185 AMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAK 244

Query: 279 CGS--IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD--SGVKMDHFT 334
            GS  +E A+ VFD M E+  V WN++IA YA +G S EA+ LY +M +   G+K +   
Sbjct: 245 GGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVA 303

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
            S ++  C    +++  K+ H  +VR G   ++   +++VD YSK GR+E A   F K+ 
Sbjct: 304 LSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIK 363

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
            KN++SW+A+I GYG HGRG+EA+E+F +M  +G+RPN++TF++VL+ACS +GL + G  
Sbjct: 364 EKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRY 423

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
            + +M ++  I+    HY CM++LLGR G LDEA++LI+    K    +W ALL+ACR++
Sbjct: 424 WYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIH 483

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
            N+EL + + ++L+ ++      YV+L NIY  +   K+   +   ++ + +   P  S 
Sbjct: 484 KNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSS 543

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLS 633
            E+K + ++F  GD+SH Q  EIY  +++++  + + GYVP   ++L D+DE+E+   L 
Sbjct: 544 FELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALR 603

Query: 634 YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
            HSEKLAVAF L+N+   + + I+++ R+C DCH A+K I  +T REI++RD  RFHHFK
Sbjct: 604 IHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFK 663

Query: 694 DGMCSCGDYW 703
           DG+CSC DYW
Sbjct: 664 DGLCSCRDYW 673



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 105/222 (47%), Gaps = 5/222 (2%)

Query: 99  SQIEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           S I     N    EA+ L+ ++L   GG    +    A++ AC    +I+  KR+ + ++
Sbjct: 269 SMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVV 328

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
             G E ++Y+   ++ M+ +CG +  A R F ++ E+N++S + +I G    G   EA  
Sbjct: 329 RMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALE 388

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS--CALIDM 275
           +F ++          TF +++ A +   L+  G+  ++ A+K  FG    V     ++D+
Sbjct: 389 IFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYN-AMKQEFGIEAGVEHYGCMVDL 447

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYSEEA 316
             + G +++A  +  EM  K     W  +++   +H   E A
Sbjct: 448 LGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELA 489


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/598 (36%), Positives = 341/598 (57%), Gaps = 30/598 (5%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N    +A+E F  +  EG  +    T+ ++++AC  + +     +V   ++ +GF  +++
Sbjct: 218 NGDGHKAIECFRDMRGEG-IECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVF 276

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + + ++ M+ +CG + +ARR+ + M   + VS N +I G +  G   EA  LF  +    
Sbjct: 277 VGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRH 336

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 T+ +++   + +  +     +HS  +K GF     V+ AL+DMY+K G  + A 
Sbjct: 337 MKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAF 396

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VF++M++K  + W +++ G   +G  EEAL L+ EMR  G+  D    + ++  C  L 
Sbjct: 397 DVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELT 456

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
            LE  KQ HA  ++ G G  +  +++LV  Y+K G IEDA  VFD M  ++VI+W ALI 
Sbjct: 457 VLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIV 516

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GY  +GRG +                             +GL E G   FQSM   + IK
Sbjct: 517 GYAQNGRGRD----------------------------HAGLVEHGRSYFQSMEEVYGIK 548

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P   HYACMI+LLGR G L EA  L+     +    +W ALL ACRV+GN+ELG+ AA  
Sbjct: 549 PGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANN 608

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           L+ +EP+    YV+L N+Y+++GK +EAA+  R ++ +G+   P CSWIE+  + H F+S
Sbjct: 609 LFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMS 668

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGL 645
            D+SH +T EIY KVD +M+ I + GYVP+    L D+DE+ + + L+YHSEKLAVAFGL
Sbjct: 669 EDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGL 728

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +      P++I ++ RIC DCH A+K ++ V  R +++RD++ FHHF++G CSC DYW
Sbjct: 729 LTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 786



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 126/451 (27%), Positives = 222/451 (49%), Gaps = 16/451 (3%)

Query: 94  SAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVF 153
           S  +C Q+E   LN   R  +          G    SS  + ++S       + + +++F
Sbjct: 12  SRKVCHQLEHTELNHHIRRFVN-------SCGTVHSSSDSNWVLSNLSKCGRVDDARKLF 64

Query: 154 SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
             M     + D    N ++  +   G + +AR+LF E P R+ ++ + +I+G    G  +
Sbjct: 65  DVMP----DRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDV 120

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA  LF ++  E       T+ +++R  +   L+  GKQ+H+ A+K  F  N FV   L+
Sbjct: 121 EALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLV 180

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTT-VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332
           DMY+KC  I +A+ +F+   +K   V W  ++ GY+ +G   +A++ + +MR  G++ + 
Sbjct: 181 DMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQ 240

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
           FTF  I+  C  +++     Q H  +VR GFG ++   SALVD YSK G + +AR + + 
Sbjct: 241 FTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLET 300

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           M   + +SWN++I G    G GEEA+ LF  M L  M+ +  T+ +VL+ C    +  R 
Sbjct: 301 MEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLN-CFSFVMDMRN 359

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACR 512
                S+      +   +    ++++  + G  D AF +      K   + W +L+T C 
Sbjct: 360 AMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVIS-WTSLVTGCV 418

Query: 513 VNGNLE--LGKFAAEKLYGMEPEKLSNYVVL 541
            NG+ E  L  F   ++ G+ P+++    VL
Sbjct: 419 HNGSYEEALRLFCEMRIMGIHPDQIVIAAVL 449


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 194/553 (35%), Positives = 340/553 (61%), Gaps = 2/553 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            Y A I+AC   +++ + +++ +++ S+ F  D ++ N ++ ++ +CG +++A ++FD+M
Sbjct: 53  VYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKM 112

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
             +++VS   +IAG   +    EA  L   + +        TFA++++A        +G 
Sbjct: 113 RNKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADSGIGG 172

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           Q+H+ A+K  + ++V+V  AL+DMY++CG ++ A  VFD++  K  V WN +I+G+A  G
Sbjct: 173 QIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKG 232

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             E AL ++ EM+ +G +  HFT+S I      + +LE  K  HA +++    L     +
Sbjct: 233 DGETALMVFAEMQRNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGN 292

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
            ++D Y+K G + DAR VF+++L K++++WN+++  +  +G G+EAV  FE+M  +G+  
Sbjct: 293 TMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYL 352

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           N ++FL +L+ACS  GL + G   F  M +++ ++P   HY  +++LLGR GLL+ A   
Sbjct: 353 NQISFLCILTACSHGGLVKEGKHYF-DMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVF 411

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           I   P + T  +W ALL ACR++ N ++G+FAA+ ++ ++P+     V+L NIY S+G  
Sbjct: 412 IFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHW 471

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
             AA V + ++  G++  PACSW+E++   H+F++ D +H + +EIY+  D + ++I K 
Sbjct: 472 DAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRAEEIYKMWDEISMKIRKE 531

Query: 612 GYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           GYVP+   +L  VDEQE+   L YHSEK+A+AF LI       ++I+++ RIC DCH+A 
Sbjct: 532 GYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICGDCHSAF 591

Query: 671 KLIAMVTGREIVV 683
           K I+ V  REIV+
Sbjct: 592 KYISKVFEREIVI 604



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 2/199 (1%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           AL +F  ++   GF+    TY ++ SA  G+ ++ + K V ++M+ +  +   ++ N +L
Sbjct: 237 ALMVFAEMQ-RNGFEATHFTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNTML 295

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            M+ + G MIDAR++F+ +  ++LV+ N ++      G   EA   F ++ +        
Sbjct: 296 DMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQI 355

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA-QGVFDE 291
           +F  ++ A +   L+  GK       +      +     ++D+  + G +  A   +F  
Sbjct: 356 SFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKM 415

Query: 292 MSEKTTVGWNTIIAGYALH 310
             E T   W  ++A   +H
Sbjct: 416 PMEPTAAVWGALLAACRMH 434


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/609 (35%), Positives = 348/609 (57%), Gaps = 8/609 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           +Q+ +L    ++ +AL L+  +    G    + T+   + +C  L       +    +  
Sbjct: 19  TQLRELAKRCQFLQALSLYPQM-LRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITK 77

Query: 159 TG--FEPDLYMRNRVLLMHVRCGMMIDARRLFDE-MPERNLVSC-NMIIAGMIDSGDYLE 214
            G  FEP  +++  ++ M+ +  ++ +AR++F+E    R L  C N +++G + +    E
Sbjct: 78  VGCVFEP--FVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSE 135

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
           A LLF  + EE     S T   +I A      + +G  LH   LK GF  +V V    I 
Sbjct: 136 AVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFIT 195

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MY KCGS+  AQ +FDEM  K  + WN +++GYA +G +   L+LY  M  +GV  D  T
Sbjct: 196 MYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVT 255

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
              ++  C  L +     +    +   GF  +   N+AL++ Y++ G +  A+ VFD M 
Sbjct: 256 LVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMP 315

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
            + ++SW A+I GYG HG GE AV+LF++M+ +G+ P+   F+ VLSACS +GL+++G E
Sbjct: 316 ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLE 375

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
            F+ M R+++++P   HY+CM++LLGR G L EA  LI   P K    +W ALL AC+++
Sbjct: 376 YFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIH 435

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
            N+EL + A E++  +EPE +  YV+L NIY+++   K    +   ++ K L+  P CS+
Sbjct: 436 KNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSY 495

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY 634
           +E+K + H F+ GD++H+Q+ EIYR ++ +   I +    PE+        +   RV   
Sbjct: 496 VELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKDNREESNKDGFTRV-GV 554

Query: 635 HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKD 694
           HSEKLAVAFGL+NT+    + I+++ RIC DCH   K+++ +  R++ VRDA+RFHHF++
Sbjct: 555 HSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRN 614

Query: 695 GMCSCGDYW 703
           G CSC DYW
Sbjct: 615 GSCSCKDYW 623



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 4/218 (1%)

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           WNT +   A      +AL LY +M   G + + FTF   ++ C  L+      Q H  + 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEA 417
           + G   +    + L+  Y K   +++AR VF++     K  + +NAL++GY ++ +  EA
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           V LF QM   G+  N VT L ++ AC      E G  +  S +  +          C I 
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCS-TLKYGFDSDVSVVNCFIT 195

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           +  + G ++ A  L    P K   + W A+++    NG
Sbjct: 196 MYMKCGSVNYAQKLFDEMPVKGLIS-WNAMVSGYAQNG 232


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/577 (36%), Positives = 341/577 (59%), Gaps = 4/577 (0%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           S Y  ++ +C+  R++R  +++ + +L +G   D  +  R++ ++  CG +  ARR+FDE
Sbjct: 69  SNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDE 128

Query: 191 MPER-NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELIS 248
           MP + N+   N++I      G    A  L+  +    S    + T+  +++A A L  +S
Sbjct: 129 MPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLS 188

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
            G+++H   ++  +  +VFV   LIDMY+KCG +++A  VF++ + +    WN++IA   
Sbjct: 189 AGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACG 248

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
            +G   EAL L   M   G+     T    I      ++L   ++ H    R GFG    
Sbjct: 249 QNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDK 308

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             ++L+D Y+K G +  A  +F+++L + +ISWNA+I G+G HG  + A ELF +M    
Sbjct: 309 LKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEA 368

Query: 429 -MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
            + P+H+TF+ VLSAC+  G+ +   E+F  M   + IKP   HY C++++LG  G   E
Sbjct: 369 QVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKE 428

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A  +I+G   K    +W ALL  C+++ N+EL + A +KL  +EPE   NYV+L NIY  
Sbjct: 429 ASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAE 488

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
           SGK +EAA V + +  +GL+ + ACSWIE+K + H FL GD SH ++ +IY +++R+   
Sbjct: 489 SGKWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELERLEGL 548

Query: 608 ISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
           IS+ GYVP+   +  +V++ E+R + + HSE+LA+AFGLI+T   T L + ++ R+C DC
Sbjct: 549 ISQTGYVPDTTPVFHNVEDDEKRNMVWGHSERLAIAFGLISTPPRTKLLVTKNLRVCEDC 608

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           H  IKLI+ +  REI++RD +R+HHF +G CSC D+W
Sbjct: 609 HVVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 645



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 153/317 (48%), Gaps = 4/317 (1%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           A+EL+  +   G     + TY  ++ AC  L  +   + V   ++ T +  D+++   ++
Sbjct: 154 AIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSAGREVHDRVMRTNWATDVFVCTGLI 213

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            M+ +CG M +A  +F++   R+    N +IA    +G   EA  L  ++  E       
Sbjct: 214 DMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNMAAEGIAPTIA 273

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T  + I A+A    +  G++LH    + GFG    +  +L+DMY+K G +  A  +F+++
Sbjct: 274 TLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQL 333

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMR-DSGVKMDHFTFSMIIRICTRLASLEHA 351
             +  + WN +I G+ +HG+++ A +L+  MR ++ V  DH TF  ++  C     ++ A
Sbjct: 334 LHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEA 393

Query: 352 KQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYG 409
           K+    +V  +     +   + LVD     GR ++A  V   ML K +   W AL+ G  
Sbjct: 394 KEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCK 453

Query: 410 NHGRGEEAVELFEQMLL 426
            H +  E  EL  Q L+
Sbjct: 454 IH-KNVELAELALQKLI 469



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 8/189 (4%)

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
           +H  ++ I+R C    ++   +Q HA L+  G GLD V  + LVD Y+  G +  AR VF
Sbjct: 67  NHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVF 126

Query: 391 DKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGL 448
           D+M  + NV  WN LI  Y   G  E A+EL+  ML  G M+P++ T+  VL AC+    
Sbjct: 127 DEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLD 186

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYAC--MIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
              G E+   + R +        + C  +I++  + G +DEA+A+      +    +W +
Sbjct: 187 LSAGREVHDRVMRTNWATDV---FVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAA-VWNS 242

Query: 507 LLTACRVNG 515
           ++ AC  NG
Sbjct: 243 MIAACGQNG 251


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/597 (35%), Positives = 339/597 (56%), Gaps = 10/597 (1%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           ++ E+F  ++   G      TY  ++  C     I   +++ S  +  GFE D+Y+   +
Sbjct: 329 KSFEIFGQMQ-ATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVL 387

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG- 230
           + M+ + G +  AR++ + + +R++VS   +IAG +      EA   F    +E  DCG 
Sbjct: 388 IDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATF----KEMQDCGV 443

Query: 231 ---SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
              +   A+   A AG++ +  G Q+H+     G+  ++ +   L+++Y++CG  E+A  
Sbjct: 444 WPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFS 503

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           +F E+  K  + WN +I+G+      ++AL ++ +M  +G K + FTF   I     LA 
Sbjct: 504 LFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLAD 563

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           ++  KQ H   V+ G   +    +AL+  Y K G IEDA+ +F +M  +N +SWN +I  
Sbjct: 564 IKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITS 623

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
              HGRG EA++LF+QM   G++PN VTF+ VL+ACS  GL E G   F+SMS  + + P
Sbjct: 624 CSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNP 683

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
              HYAC++++LGR G LD A   +   P      +W  LL+AC+V+ N+E+G+ AA+ L
Sbjct: 684 IPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHL 743

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
             +EP   ++YV+L N Y  +GK     +V + ++ +G+R  P  SWIEVK   H F  G
Sbjct: 744 LELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVG 803

Query: 588 DQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLI 646
           D+ H  + +IY+ +  +   +SK GY  E   L  + +++++   ++ HSEKLAVAFGL+
Sbjct: 804 DRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLM 863

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
                 PL+++++ R+C DCH+ +K  + VT REIV+RD  RFHHF  G CSCGDYW
Sbjct: 864 TLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 185/366 (50%), Gaps = 15/366 (4%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +++SAC   +   + + + + +    F  + ++ N ++ +++  G    A R+F +M   
Sbjct: 149 SVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFC 208

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLF--LDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           + V+ N +I+G    G    A  +F  + L     DC   T A+++ A A +  +  GKQ
Sbjct: 209 DRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDC--VTVASLLAACASVGDLQKGKQ 266

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LHS  LK G   +     +L+D+Y KCG IE A  +F+       V WN ++  Y     
Sbjct: 267 LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISD 326

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
             ++ +++ +M+ +G+  + FT+  I+R CT    +E  +Q H+  +++GF  D+  +  
Sbjct: 327 LAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGV 386

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D YSK+G ++ AR + + +  ++V+SW ++IAGY  H   EEA+  F++M   G+ P+
Sbjct: 387 LIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPD 446

Query: 433 HVTFLAVLSACS-----RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           ++   +  SAC+     R GL           + D  I      +  ++ L  R G  +E
Sbjct: 447 NIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISI------WNTLVNLYARCGRSEE 500

Query: 488 AFALIR 493
           AF+L R
Sbjct: 501 AFSLFR 506



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/363 (28%), Positives = 183/363 (50%), Gaps = 4/363 (1%)

Query: 128 VGSSTYDALISACIGLRSIRE--VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
           +GS+     + AC G R  R   V  + +  +  G   D  + N ++ ++ + G++  AR
Sbjct: 40  LGSADLTCALQACRG-RGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQAR 98

Query: 186 RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
           ++F E+  R+ VS   +++G   SG   EAF L+  +            ++++ A    +
Sbjct: 99  QVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGK 158

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
           L + G+ +H+   K  F    FV  ALI +Y   GS + A+ VF +M     V +NT+I+
Sbjct: 159 LFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLIS 218

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
           G+A  G+ E AL ++ EM+ SG++ D  T + ++  C  +  L+  KQ H+ L++ G   
Sbjct: 219 GHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSF 278

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           D +   +L+D Y K G IE A  +F+     NV+ WN ++  YG      ++ E+F QM 
Sbjct: 279 DYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQ 338

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
             G+ PN  T+  +L  C+ +G  E G +I  S+S  +  +        +I++  + G L
Sbjct: 339 ATGIHPNQFTYPCILRTCTCTGQIELGEQI-HSLSIKNGFESDMYVSGVLIDMYSKYGCL 397

Query: 486 DEA 488
           D+A
Sbjct: 398 DKA 400


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/581 (35%), Positives = 350/581 (60%), Gaps = 11/581 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY+ LI  C    S+ +  RV  ++L  G + D ++  +++ M+   G +  AR++FD+ 
Sbjct: 79  TYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT 138

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL----I 247
            +R +   N +   +  +G   E   L+  +     +    T+  +++A    E     +
Sbjct: 139 RKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHL 198

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
             GK++H+   + G+  +V++   L+DMY++ G ++ A  VF  M  +  V W+ +IA Y
Sbjct: 199 MKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACY 258

Query: 308 ALHGYSEEALDLYYEM----RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           A +G + EAL  + EM    +DS    +  T   +++ C  LA+LE  K  H  ++R G 
Sbjct: 259 AKNGKAFEALRTFREMMRETKDSSP--NSVTMVSVLQACASLAALEQGKLIHGYILRRGL 316

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
              +   SALV  Y + G++E  + VFD+M  ++V+SWN+LI+ YG HG G++A+++FE+
Sbjct: 317 DSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEE 376

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           ML NG  P  VTF++VL ACS  GL E G  +F++M RDH IKP+  HYACM++LLGR  
Sbjct: 377 MLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRAN 436

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
            LDEA  +++    +    +W +LL +CR++GN+EL + A+ +L+ +EP+   NYV+L +
Sbjct: 437 RLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLAD 496

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           IY  +    E   V + L  +GL+ LP   W+EV+++ + F+S D+ +   ++I+  + +
Sbjct: 497 IYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVK 556

Query: 604 MMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           +  ++ + GY+P+ K +L +++ E+++R++  HSEKLA+AFGLINTS   P++I ++ R+
Sbjct: 557 LAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRL 616

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH   K I+    +EI+VRD +RFH FK+G+CSCGDYW
Sbjct: 617 CEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 191/410 (46%), Gaps = 51/410 (12%)

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256
           +S N +I  +   G   +A    + +  + S    +T+  +I        +S   ++H  
Sbjct: 47  ISNNQLIQSLCKEGKLKQA----IRVLSQESSPSQQTYELLILCCGHRSSLSDALRVHRH 102

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
            L  G   + F++  LI MYS  GS++ A+ VFD+  ++T   WN +     L G+ EE 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICT----RLASLEHAKQAHAGLVRHGFGLDIVANSA 372
           L LY++M   GV+ D FT++ +++ C      +  L   K+ HA L R G+   +   + 
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTT 222

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML--LNGMR 430
           LVD Y+++G ++ A +VF  M  +NV+SW+A+IA Y  +G+  EA+  F +M+       
Sbjct: 223 LVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSS 282

Query: 431 PNHVTFLAVLSACS-----------------------------------RSGLSERGWEI 455
           PN VT ++VL AC+                                   R G  E G  +
Sbjct: 283 PNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRV 342

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F  M     +   ++  +  +   G++ +      L  GA    T   + ++L AC   G
Sbjct: 343 FDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGA--SPTPVTFVSVLGACSHEG 400

Query: 516 NLELGKFAAEKLY---GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
            +E GK   E ++   G++P+ + +Y  ++++   + +L EAA++++ +R
Sbjct: 401 LVEEGKRLFETMWRDHGIKPQ-IEHYACMVDLLGRANRLDEAAKMVQDMR 449



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 101/213 (47%), Gaps = 3/213 (1%)

Query: 107 NKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           N +  EAL  F E++         S T  +++ AC  L ++ + K +  Y+L  G +  L
Sbjct: 261 NGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSIL 320

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            + + ++ M+ RCG +   +R+FD M +R++VS N +I+     G   +A  +F ++   
Sbjct: 321 PVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLAN 380

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSCALIDMYSKCGSIED 284
            +     TF +++ A +   L+  GK+L     +  G    +     ++D+  +   +++
Sbjct: 381 GASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDE 440

Query: 285 AQGVFDEM-SEKTTVGWNTIIAGYALHGYSEEA 316
           A  +  +M +E     W +++    +HG  E A
Sbjct: 441 AAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELA 473


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/597 (35%), Positives = 338/597 (56%), Gaps = 10/597 (1%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           ++ E+F  ++   G      TY  ++  C     I   +++ S  +  GFE D+Y+   +
Sbjct: 329 KSFEIFGQMQ-ATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVL 387

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG- 230
           + M+ +   +  AR++ + + +R++VS   +IAG +      EA   F    +E  DCG 
Sbjct: 388 IDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATF----KEMQDCGV 443

Query: 231 ---SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
              +   A+   A AG++ +  G Q+H+     G+  ++ +   L+++Y++CG  E+A  
Sbjct: 444 WPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFS 503

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           +F E+  K  + WN +I+G+      E+AL ++ +M  +G K + FTF   I     LA 
Sbjct: 504 LFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLAD 563

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           ++  KQ H   V+ G   +    +AL+  Y K G IEDA+ +F +M  +N +SWN +I  
Sbjct: 564 IKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIITS 623

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
              HGRG EA++LF+QM   G++PN VTF+ VL+ACS  GL E G   F+SMS  + + P
Sbjct: 624 CSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLNP 683

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
              HYAC++++LGR G LD A   +   P      +W  LL+AC+V+ N+E+G+ AA+ L
Sbjct: 684 IPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKHL 743

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
             +EP   ++YV+L N Y  +GK     +V + ++ +G+R  P  SWIEVK   H F  G
Sbjct: 744 LELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFVG 803

Query: 588 DQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLI 646
           D+ H  + +IY+ +  +   +SK GY  E   L  + +++++   ++ HSEKLAVAFGL+
Sbjct: 804 DRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGLM 863

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
                 PL+++++ R+C DCH+ +K  + VT REIV+RD  RFHHF  G CSCGDYW
Sbjct: 864 TLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 184/366 (50%), Gaps = 15/366 (4%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +++SAC   +   + + + + +    F  + ++ N ++ +++  G    A R+F +M   
Sbjct: 149 SVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFC 208

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLF--LDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           + V+ N +I+G    G    A  +F  + L     DC   T A+++ A A +  +  GKQ
Sbjct: 209 DRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDC--VTVASLLAACASVGDLQKGKQ 266

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LHS  LK G   +     +L+D+Y KCG IE A  +F+       V WN ++  Y     
Sbjct: 267 LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISD 326

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
             ++ +++ +M+ +G+  + FT+  I+R CT    +E  +Q H+  +++GF  D+  +  
Sbjct: 327 LAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGV 386

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D YSK+  ++ AR + + +  ++V+SW ++IAGY  H   EEA+  F++M   G+ P+
Sbjct: 387 LIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPD 446

Query: 433 HVTFLAVLSACS-----RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           ++   +  SAC+     R GL           + D  I      +  ++ L  R G  +E
Sbjct: 447 NIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISI------WNTLVNLYARCGRSEE 500

Query: 488 AFALIR 493
           AF+L R
Sbjct: 501 AFSLFR 506



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/363 (28%), Positives = 181/363 (49%), Gaps = 4/363 (1%)

Query: 128 VGSSTYDALISACIGLRSIRE--VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
           +GS+     + AC G R  R   V  + +  +  G   D  + N ++ ++ + G++  AR
Sbjct: 40  LGSADLTCALQACRG-RGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQAR 98

Query: 186 RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
           ++F E+  R+ VS   +++G    G   EAF L+  +            ++++ A    +
Sbjct: 99  QVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGK 158

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
           L + G+ +H+   K  F    FV  ALI +Y   GS + A+ VF +M     V +NT+I+
Sbjct: 159 LFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLIS 218

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
           G+A  G+ E AL ++ EM+ SG++ D  T + ++  C  +  L+  KQ H+ L++ G   
Sbjct: 219 GHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSF 278

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           D +   +L+D Y K G IE A  +F+     NV+ WN ++  YG      ++ E+F QM 
Sbjct: 279 DYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQ 338

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
             G+ PN  T+  +L  C+ +G  E G +I  S+S  +  +        +I++  +   L
Sbjct: 339 ATGIHPNKFTYPCILRTCTCTGQIELGEQI-HSLSIKNGFESDMYVSGVLIDMYSKYRCL 397

Query: 486 DEA 488
           D+A
Sbjct: 398 DKA 400


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 232/655 (35%), Positives = 361/655 (55%), Gaps = 52/655 (7%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISAC--IGLRSIREVKRVFSYM 156
           S IE      + + ALE+F  +  E GF     T   ++  C  +G RS+   K+   + 
Sbjct: 198 SIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLG--KQFHGFA 255

Query: 157 LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF 216
           +++    ++++ N ++ M+ + GMM +A  +F  MP +++VS N ++AG    G + +A 
Sbjct: 256 VTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAV 315

Query: 217 LLFLDLWEEFSDCGSRTFATMIRA------------------SAGLE-----LISV---- 249
            LF  + EE       T++  I                    S+G++     LISV    
Sbjct: 316 RLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGC 375

Query: 250 --------GKQLHSCALKM-------GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS- 293
                   GK++H  A+K        G GD   V   LIDMY+KC  ++ A+ +FD +S 
Sbjct: 376 ASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSP 435

Query: 294 -EKTTVGWNTIIAGYALHGYSEEALDLYYEM--RDSGVKMDHFTFSMIIRICTRLASLEH 350
            E+  V W  +I GY+ HG + +AL+L  EM   D   + + FT S  +  C  LA+L  
Sbjct: 436 KERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSI 495

Query: 351 AKQAHAGLVRHG-FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
            KQ HA  +R+    + +  ++ L+D Y+K G I DAR VFD M+ KN ++W +L+ GYG
Sbjct: 496 GKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYG 555

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            HG GEEA+ +FE+M   G + + VT L VL ACS SG+ ++G E F  M  D  + P  
Sbjct: 556 MHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGP 615

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HYAC+++LLGR G L+ A  LI   P +    +W ALL+ CR++G +ELG++AA+K+  
Sbjct: 616 EHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITE 675

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           +      +Y +L N+Y ++G+ K+   +   +R KG++  P CSW+E  K    F  GD+
Sbjct: 676 LASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDK 735

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINT 648
           +H   KEIY+ +   M  I   GYVPE    L DVD++E+  L + HSEKLA+A+G++ T
Sbjct: 736 THPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTT 795

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
                ++I ++ R+C DCH A   ++ +   EI++RD+SRFHHFK+G+CSC  YW
Sbjct: 796 PQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 129/483 (26%), Positives = 221/483 (45%), Gaps = 57/483 (11%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  +  AC  + S+R      +    TGF  ++++ N ++ M+ RCG + DAR++FDEM
Sbjct: 129 TFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEM 188

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELI 247
           P  ++VS N II      G    A  +F  +  EF   G R    T   ++   A +   
Sbjct: 189 PVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEF---GFRPDDITLVNVLPPCASVGTR 245

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           S+GKQ H  A+      N+FV   L+DMY+K G +++A  VF  M  K  V WN ++AGY
Sbjct: 246 SLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGY 305

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSM------------------------------ 337
           +  G  E+A+ L+ +M++  +KMD  T+S                               
Sbjct: 306 SQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNE 365

Query: 338 -----IIRICTRLASLEHAKQAHA-------GLVRHGFGLDIVANSALVDFYSKWGRIED 385
                ++  C  + +L H K+ H         L ++G G + +  + L+D Y+K  +++ 
Sbjct: 366 VTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDI 425

Query: 386 ARHVFDKMLCK--NVISWNALIAGYGNHGRGEEAVELFEQMLLNG--MRPNHVTFLAVLS 441
           AR +FD +  K  +V++W  +I GY  HG   +A+EL  +M       RPN  T    L 
Sbjct: 426 ARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALV 485

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           AC+       G +I     R+ +         C+I++  + G + +A  L+     +  +
Sbjct: 486 ACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDA-RLVFDNMMEKNE 544

Query: 502 NMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
             W +L+T   ++G  E  LG F   +  G + + ++  VVL    + SG + +  E   
Sbjct: 545 VTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYAC-SHSGMIDQGMEYFN 603

Query: 560 TLR 562
            ++
Sbjct: 604 RMK 606



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 152/330 (46%), Gaps = 17/330 (5%)

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM--SEKTTVGWNTII 304
           IS  K +H   L  G    + ++  LI  Y   G +  A  +      S+     WN++I
Sbjct: 41  ISQVKLIHQKLLSFGI-LTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLI 99

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
             Y  +G + + L  +  M       D++TF  + + C  ++S+     +HA     GF 
Sbjct: 100 RSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFM 159

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            ++   +ALV  YS+ G + DAR VFD+M   +V+SWN++I  Y   G+ + A+E+F +M
Sbjct: 160 SNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKM 219

Query: 425 LLN-GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
               G RP+ +T + VL  C+  G    G + F   +   ++        C++++  + G
Sbjct: 220 TNEFGFRPDDITLVNVLPPCASVGTRSLGKQ-FHGFAVTSEMIQNMFVGNCLVDMYAKFG 278

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF--AAEKLYGMEPEKLSNYVVL 541
           ++DEA  +    P K   + W A+     V G  ++G+F  A      M+ EK+   VV 
Sbjct: 279 MMDEANTVFSNMPVKDVVS-WNAM-----VAGYSQIGRFEDAVRLFEQMQEEKIKMDVVT 332

Query: 542 ----LNIYNSSGKLKEAAEVIRTLRRKGLR 567
               ++ Y   G   EA  V R +   G++
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIK 362


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/571 (38%), Positives = 329/571 (57%), Gaps = 48/571 (8%)

Query: 175 HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL------WEEFSD 228
           +VR G +  AR+  D M E+ +V+ N +I+G +  G +LEA  +F  +      W+EF  
Sbjct: 235 YVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEF-- 292

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKM----GFGDNVFVSCALIDMYSKCGSIED 284
               T+ +++ A A       GKQ+H+  L+         ++ V+ AL  +Y KCG +++
Sbjct: 293 ----TYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDE 348

Query: 285 AQGVFDEMSEKTTVGWNTIIAGY-------------------------------ALHGYS 313
           A+ VF++M  K  V WN I++GY                               A +G+ 
Sbjct: 349 ARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFG 408

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
           EE+L L+  M+  G +   + F+  I  C  LA+L H +Q HA LVR GF   + A +AL
Sbjct: 409 EESLKLFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNAL 468

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           +  Y+K G +E A  +F  M   + +SWNA+IA  G HG G +A+ELFE ML   + P+ 
Sbjct: 469 ITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDR 528

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
           +TFL VLS CS +GL E G   F+SMS  + I P   HYA MI+LL R G   EA  +I 
Sbjct: 529 ITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMIE 588

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
             P +    +W ALL  CR++GN++LG  AAE+L+ + P+    YV+L N+Y + G+  +
Sbjct: 589 TMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWDD 648

Query: 554 AAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGY 613
            A+V + +R KG++  P CSWIEV+ + HVFL  D  H + + +Y  ++ + L++ K GY
Sbjct: 649 VAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLGY 708

Query: 614 VPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKL 672
           +P+ K +L D++ EQ++ VLS HSEKLAV FGL+       +++ ++ RIC DCHNA K 
Sbjct: 709 IPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDCHNAFKF 768

Query: 673 IAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++ V  REIVVRD  RFHHFK+G CSCG+YW
Sbjct: 769 MSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  146 bits (369), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 179/391 (45%), Gaps = 82/391 (20%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---------------- 193
           + V ++M+++GF+P  Y+ NR++ ++ +   ++ A  LFDE+ +                
Sbjct: 35  RTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSA 94

Query: 194 -----------------RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
                            R+ V  N +I G   + D   A  LF DL        + TF +
Sbjct: 95  GNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTS 154

Query: 237 MIRASAGL-ELISVGKQLHSCALKMGFGD---------NVFVSCA--------------- 271
           ++ A A + E     +Q+H   +K G G          +VFV CA               
Sbjct: 155 VLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAAR 214

Query: 272 ----------------LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
                           +I  Y + G ++ A+   D M+EK  V WN +I+GY  HG+  E
Sbjct: 215 KLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLE 274

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH----GFGLDIVANS 371
           AL+++ +M   G++ D FT++ ++  C       H KQ HA ++R          +  N+
Sbjct: 275 ALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNN 334

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           AL   Y K G++++AR VF++M  K+++SWNA+++GY N GR +EA   FE+M       
Sbjct: 335 ALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEM----PER 390

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           N +T+  ++S  +++G  E   ++F  M  +
Sbjct: 391 NLLTWTVMISGLAQNGFGEESLKLFNRMKSE 421



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 182/399 (45%), Gaps = 54/399 (13%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   +K      + I   V +  + EALE+F  + +  G      TY +++SAC      
Sbjct: 249 DGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKM-YLLGIQWDEFTYTSVLSACANAGFF 307

Query: 147 REVKRVFSYMLSTGFEP----DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
              K+V +Y+L T   P     L + N +  ++ +CG + +AR++F++MP ++LVS N I
Sbjct: 308 LHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAI 367

Query: 203 IAGMIDSGDYLEAFLLFLDL-------W-------------------------EEFSDCG 230
           ++G +++G   EA   F ++       W                         E F  C 
Sbjct: 368 LSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPC- 426

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
              FA  I A A L  +  G+QLH+  +++GF  ++    ALI MY+KCG +E A  +F 
Sbjct: 427 DYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFL 486

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            M    +V WN +IA    HG+  +AL+L+  M    +  D  TF  ++  C+    +E 
Sbjct: 487 TMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEE 546

Query: 351 AK---QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIA 406
                ++ +GL     G D  A   ++D   + G+  +A+ + + M  +     W AL+A
Sbjct: 547 GHRYFKSMSGLYGICPGEDHYAR--MIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLA 604

Query: 407 G---YGNHGRGEEAVE-LFEQMLLNGMRPNHVTFLAVLS 441
           G   +GN   G +A E LFE M      P H     +LS
Sbjct: 605 GCRIHGNMDLGIQAAERLFELM------PQHDGTYVLLS 637



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 96/435 (22%), Positives = 184/435 (42%), Gaps = 103/435 (23%)

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE------------- 294
           S+ + +H+  +  GF    ++   LID+Y K   +  A  +FDE+ +             
Sbjct: 32  SIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAH 91

Query: 295 --------------------KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
                               + TV +N +I GY+ +     A++L+ ++  +G + D+FT
Sbjct: 92  SSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFT 151

Query: 335 FSMIIRICTRLASLE-HAKQAHAGLVRHGFGLDIVANSALVDFYSK-------------- 379
           F+ ++     +   E   +Q H  +V+ G G      +AL+  + K              
Sbjct: 152 FTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMA 211

Query: 380 ----------------W----------GRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
                           W          G ++ AR   D M  K V++WNA+I+GY +HG 
Sbjct: 212 AARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGF 271

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR-AMHY 472
             EA+E+F +M L G++ +  T+ +VLSAC+ +G    G ++   + R    +PR ++ +
Sbjct: 272 FLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILR---TEPRPSLDF 328

Query: 473 ACMIE-----LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
           +  +      L  + G +DEA  +    P K   + W A+L+     G ++  K   E++
Sbjct: 329 SLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVS-WNAILSGYVNAGRIDEAKSFFEEM 387

Query: 528 YGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR--------MLPACSWIEVK 578
               PE+ L  + V+++    +G  +E+ ++   ++ +G           + AC+W+   
Sbjct: 388 ----PERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAWLA-- 441

Query: 579 KQPHVFLSGDQSHVQ 593
                 + G Q H Q
Sbjct: 442 ----ALMHGRQLHAQ 452


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/581 (35%), Positives = 351/581 (60%), Gaps = 11/581 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY+ LI  C    S+ +  RV  ++L  G + D ++  +++ M+   G +  AR++FD+ 
Sbjct: 79  TYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT 138

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL----I 247
            +R +   N +   +  +G   E   L+  +     +    T+  +++A    E     +
Sbjct: 139 RKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHL 198

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           + GK++H+   + G+  +V++   L+DMY++ G ++ A  VF+ M  +  V W+ +IA Y
Sbjct: 199 TKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACY 258

Query: 308 ALHGYSEEALDLYYEM----RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           A +G + EAL  + EM    +DS    +  T   +++ C  LA+LE  +  H  ++R G 
Sbjct: 259 AKNGKAFEALRTFREMMTETKDSSP--NSVTMVSVLQACASLAALEQGRLIHGYILRRGL 316

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
              +   SALV  Y + G+++  + VFD+M  ++V+SWN+LI+ YG HG G +A+++FE+
Sbjct: 317 DSILPVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEE 376

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           ML NG  P  VTF++VL ACS  GL E G  +F+SM RDH IKP+  HYACM++LLGR  
Sbjct: 377 MLANGASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRAN 436

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
            LDEA  +++    +    +W +LL +CR++GN+EL + A+ +L+ +EP+   NYV+L +
Sbjct: 437 RLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLAD 496

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           IY  +    E   V + L  +GL+ LP   W+EV+++ + F+S D+ +   ++I+  + +
Sbjct: 497 IYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSMDEFNPLMEQIHAFLVK 556

Query: 604 MMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           +  ++ + GY+P+ K +L +++ E+++R++  HSEKLA+AFGLINTS   P++I ++ R+
Sbjct: 557 LAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRL 616

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH   K I+    +EI+VRD +RFH FK+G+CSCGDYW
Sbjct: 617 CEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 192/410 (46%), Gaps = 51/410 (12%)

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256
           +S N +I  +   G   +A    L +  + S    +T+  +I        +S G ++H  
Sbjct: 47  ISNNQLIQSLCKEGKLKQA----LRVLSQESSPSQQTYELLILCCGHRSSLSDGLRVHRH 102

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
            L  G   + F++  LI MYS  GS++ A+ VFD+  ++T   WN +     L G+ EE 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICT----RLASLEHAKQAHAGLVRHGFGLDIVANSA 372
           L LY++M   GV+ D FT++ +++ C         L   K+ HA L R G+   +   + 
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTT 222

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML--LNGMR 430
           LVD Y+++G ++ A +VF+ M  +NV+SW+A+IA Y  +G+  EA+  F +M+       
Sbjct: 223 LVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSS 282

Query: 431 PNHVTFLAVLSACS-----------------------------------RSGLSERGWEI 455
           PN VT ++VL AC+                                   R G  + G  +
Sbjct: 283 PNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRV 342

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F  M     +   ++  +  +   GR+ +      L  GA    T   + ++L AC   G
Sbjct: 343 FDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGA--SPTPVTFVSVLGACSHEG 400

Query: 516 NLELGKFAAEKLY---GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
            +E GK   E ++   G++P+ + +Y  ++++   + +L EAA++++ +R
Sbjct: 401 LVEEGKRLFESMWRDHGIKPQ-VEHYACMVDLLGRANRLDEAAKMVQDMR 449



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 101/213 (47%), Gaps = 3/213 (1%)

Query: 107 NKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           N +  EAL  F E++         S T  +++ AC  L ++ + + +  Y+L  G +  L
Sbjct: 261 NGKAFEALRTFREMMTETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSIL 320

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            + + ++ M+ RCG +   +R+FD M +R++VS N +I+     G   +A  +F ++   
Sbjct: 321 PVISALVTMYGRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLAN 380

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSCALIDMYSKCGSIED 284
            +     TF +++ A +   L+  GK+L     +  G    V     ++D+  +   +++
Sbjct: 381 GASPTPVTFVSVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDE 440

Query: 285 AQGVFDEM-SEKTTVGWNTIIAGYALHGYSEEA 316
           A  +  +M +E     W +++    +HG  E A
Sbjct: 441 AAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELA 473


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/570 (36%), Positives = 336/570 (58%), Gaps = 1/570 (0%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           AL SA      +R  +++ +  L      + ++   +L ++ RCG++  A+R+FDEMP  
Sbjct: 123 ALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHP 182

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           + VS   +I   +D+GD  EA  +  + +       S T   ++ A A +  ++ G+ + 
Sbjct: 183 STVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVW 242

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
             A + G   +VFV+ A +D+Y KCG +  A+ VFD+M +K  V W  ++ GYA +G+  
Sbjct: 243 RAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPR 302

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EALDL+  M+  GV+ D +  +  +  CTRL +L+  +QA   +    F  + V  +AL+
Sbjct: 303 EALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALI 362

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D Y+K G   +A  VF +M  K++I WNA+I G G  G  + A  L  QM  +G++ N  
Sbjct: 363 DMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDN 422

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           TF+ +L +C+ +GL + G   F +M++ + I PR  HY C+++LL R GLL EA  LI  
Sbjct: 423 TFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDD 482

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            P      +  ALL  C+++ N EL +    +L  +EP    NYV+L NIY++ G+ ++A
Sbjct: 483 MPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDA 542

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
           A++   ++ KG+  +PACSW+E + + H F  GD+SH  + +IY+K+D + LE+   GY 
Sbjct: 543 AKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYE 602

Query: 615 PEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLI 673
           P  + ++ DV DE+++  L +HSEKLA+AF L+ T     +++ ++ R+C DCH AIKLI
Sbjct: 603 PTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLI 662

Query: 674 AMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + +T REI+VRD +RFH F+DG CSC DYW
Sbjct: 663 SRITHREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 170/368 (46%), Gaps = 48/368 (13%)

Query: 233 TFATMIRASAGL-ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           TF   +++++ L   +  G+QLH+ +LK+    N  V  +L+ +Y++CG +  AQ VFDE
Sbjct: 119 TFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDE 178

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M   +TV W  +I  Y   G   EA+ +      +G++ D FT   ++  C R+A L   
Sbjct: 179 MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATG 238

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           +       + G    +   +A VD Y K G +  AR VFDKM  K+ ++W A++ GY ++
Sbjct: 239 ETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASN 298

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG------------------- 452
           G   EA++LF  M   G+RP+       LSAC+R G  + G                   
Sbjct: 299 GHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 358

Query: 453 ----------------WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI---R 493
                           W +FQ M +   I      +  MI  LG  G    AF LI    
Sbjct: 359 TALIDMYAKCGSTAEAWVVFQQMRKKDIIV-----WNAMILGLGMTGHEKTAFTLIGQME 413

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGK---FAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
            +  K   N +  LL +C   G ++ G+       KLY + P ++ +Y  ++++ + +G 
Sbjct: 414 KSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISP-RIEHYGCIVDLLSRAGL 472

Query: 551 LKEAAEVI 558
           L+EA ++I
Sbjct: 473 LQEAHQLI 480



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 157/338 (46%), Gaps = 15/338 (4%)

Query: 99  SQIEKLVLNKRYREALELFEILE-----FEGGFDVGSSTYDALISACIGLRSIREVKRVF 153
           S +    L   Y +A +L E +      F  G    S T   +++AC  +  +   + V+
Sbjct: 183 STVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVW 242

Query: 154 SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
                 G    +++    + ++V+CG M  AR +FD+M +++ V+   ++ G   +G   
Sbjct: 243 RAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPR 302

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM----GFGDNVFVS 269
           EA  LFL +  E         A  + A   L  + +G+Q    A++M     F DN  + 
Sbjct: 303 EALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQ----AIRMVDWDEFLDNPVLG 358

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            ALIDMY+KCGS  +A  VF +M +K  + WN +I G  + G+ + A  L  +M  SGVK
Sbjct: 359 TALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVK 418

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARH 388
           ++  TF  ++  CT    ++  ++    + + +     I     +VD  S+ G +++A  
Sbjct: 419 LNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQ 478

Query: 389 VFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           + D M +  N +   AL+ G   H   E A  +  Q++
Sbjct: 479 LIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLI 516


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/659 (34%), Positives = 359/659 (54%), Gaps = 72/659 (10%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIR--EVKRVFSYMLSTGFEPDLYMRNR 170
           A+ +F  L   G       ++ ALISA   + ++      ++   +L +G    L + N 
Sbjct: 144 AVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNA 203

Query: 171 VLLMHVRCGM---MIDARRLFDEMPERNL------------------------------- 196
           ++ ++++C       DAR++ DEMP+++                                
Sbjct: 204 LIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFD 263

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256
           V  N +I+G + SG   +AF LF  +  E       TF +++ A A       GK +H  
Sbjct: 264 VVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQ 323

Query: 257 ALKMGFG----DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA---- 308
            +++         + V+ AL+ +YSK G I  A+ +FD M+ K  V WNTI++GY     
Sbjct: 324 IIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGC 383

Query: 309 --------------------------LHG-YSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
                                     +HG  SE+AL L+ +MR   VK   +T++  I  
Sbjct: 384 LDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAA 443

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C  L +L+H +Q HA LV+ GF     A +AL+  Y+K G + DAR VF  M   + +SW
Sbjct: 444 CGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSW 503

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           NA+I+  G HG G EA+ELF+QM+  G+ P+ ++FL +L+AC+ +GL + G+  F+SM R
Sbjct: 504 NAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKR 563

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           D  I P   HYA +I+LLGR G + EA  LI+  PF+ T ++W A+L+ CR NG++E G 
Sbjct: 564 DFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGA 623

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
           +AA++L+ M P+    Y++L N Y+++G+  +AA V + +R +G++  P CSWIEV  + 
Sbjct: 624 YAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKI 683

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLA 640
           HVFL GD  H + +E+Y+ ++ +   + K GYVP+ K +L D++  E+  +L  HSEKLA
Sbjct: 684 HVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLA 743

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSC 699
           V FGL+       + ++++ RIC DCH A+  ++   GREIVVRD  RFHHFKDG CSC
Sbjct: 744 VGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSC 802



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 163/372 (43%), Gaps = 66/372 (17%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYM--LSTGFEPD--LYM 167
           +A ELF  +  E    +   T+ +++SAC         K V   +  L   F P+  L +
Sbjct: 281 DAFELFRRMVSEK-VPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPV 339

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG----------------- 210
            N ++ ++ + G ++ A+R+FD M  +++VS N I++G IDSG                 
Sbjct: 340 NNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKND 399

Query: 211 --------DYL------EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256
                    Y+      +A  LF  +  E       T+A  I A   L  +  G+QLH+ 
Sbjct: 400 LSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAH 459

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
            ++ GF  +     AL+ MY+KCG++ DA+ VF  M    +V WN +I+    HG+  EA
Sbjct: 460 LVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREA 519

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF------------- 363
           L+L+ +M   G+  D  +F  I+  C            HAGLV  GF             
Sbjct: 520 LELFDQMVAEGIDPDRISFLTILTACN-----------HAGLVDEGFHYFESMKRDFGIS 568

Query: 364 -GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WNALIAGYGNHGRGEEAVELF 421
            G D  A   L+D   + GRI +AR +   M  +   S W A+++G   +G  E      
Sbjct: 569 PGEDHYAR--LIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAA 626

Query: 422 EQMLLNGMRPNH 433
           +Q+    M P H
Sbjct: 627 DQLFR--MIPQH 636


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/570 (36%), Positives = 336/570 (58%), Gaps = 1/570 (0%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           AL SA      +R  +++ +  L      + ++   +L ++ RCG++  A+R+FDEMP  
Sbjct: 76  ALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHP 135

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           + VS   +I   +D+GD  EA  +  + +       S T   ++ A A +  ++ G+ + 
Sbjct: 136 STVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVW 195

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
             A + G   +VFV+ A +D+Y KCG +  A+ VFD+M +K  V W  ++ GYA +G+  
Sbjct: 196 RAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPR 255

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EALDL+  M+  GV+ D +  +  +  CTRL +L+  +QA   +    F  + V  +AL+
Sbjct: 256 EALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALI 315

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D Y+K G   +A  VF +M  K++I WNA+I G G  G  + A  L  QM  +G++ N  
Sbjct: 316 DMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDN 375

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           TF+ +L +C+ +GL + G   F +M++ + I PR  HY C+++LL R GLL EA  LI  
Sbjct: 376 TFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDD 435

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            P      +  ALL  C+++ N EL +    +L  +EP    NYV+L NIY++ G+ ++A
Sbjct: 436 MPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNIYSNRGRWEDA 495

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
           A++   ++ KG+  +PACSW+E + + H F  GD+SH  + +IY+K+D + LE+   GY 
Sbjct: 496 AKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYE 555

Query: 615 PEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLI 673
           P  + ++ DV DE+++  L +HSEKLA+AF L+ T     +++ ++ R+C DCH AIKLI
Sbjct: 556 PTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVCSDCHTAIKLI 615

Query: 674 AMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + +T REI+VRD +RFH F+DG CSC DYW
Sbjct: 616 SRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 104/368 (28%), Positives = 170/368 (46%), Gaps = 48/368 (13%)

Query: 233 TFATMIRASAGL-ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           TF   +++++ L   +  G+QLH+ +LK+    N  V  +L+ +Y++CG +  AQ VFDE
Sbjct: 72  TFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDE 131

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M   +TV W  +I  Y   G   EA+ +      +G++ D FT   ++  C R+A L   
Sbjct: 132 MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATG 191

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           +       + G    +   +A VD Y K G +  AR VFDKM  K+ ++W A++ GY ++
Sbjct: 192 ETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASN 251

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG------------------- 452
           G   EA++LF  M   G+RP+       LSAC+R G  + G                   
Sbjct: 252 GHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLG 311

Query: 453 ----------------WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI---R 493
                           W +FQ M +   I      +  MI  LG  G    AF LI    
Sbjct: 312 TALIDMYAKCGSTAEAWVVFQQMRKKDIIV-----WNAMILGLGMTGHEKTAFTLIGQME 366

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGK---FAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
            +  K   N +  LL +C   G ++ G+       KLY + P ++ +Y  ++++ + +G 
Sbjct: 367 KSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISP-RIEHYGCIVDLLSRAGL 425

Query: 551 LKEAAEVI 558
           L+EA ++I
Sbjct: 426 LQEAHQLI 433



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 157/338 (46%), Gaps = 15/338 (4%)

Query: 99  SQIEKLVLNKRYREALELFEILE-----FEGGFDVGSSTYDALISACIGLRSIREVKRVF 153
           S +    L   Y +A +L E +      F  G    S T   +++AC  +  +   + V+
Sbjct: 136 STVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVW 195

Query: 154 SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
                 G    +++    + ++V+CG M  AR +FD+M +++ V+   ++ G   +G   
Sbjct: 196 RAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYASNGHPR 255

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM----GFGDNVFVS 269
           EA  LFL +  E         A  + A   L  + +G+Q    A++M     F DN  + 
Sbjct: 256 EALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQ----AIRMVDWDEFLDNPVLG 311

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            ALIDMY+KCGS  +A  VF +M +K  + WN +I G  + G+ + A  L  +M  SGVK
Sbjct: 312 TALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKSGVK 371

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARH 388
           ++  TF  ++  CT    ++  ++    + + +     I     +VD  S+ G +++A  
Sbjct: 372 LNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQEAHQ 431

Query: 389 VFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           + D M +  N +   AL+ G   H   E A  +  Q++
Sbjct: 432 LIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLI 469


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/550 (37%), Positives = 326/550 (59%), Gaps = 3/550 (0%)

Query: 157 LSTGFEPD-LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           L  G+ PD  ++    L M+ + G +  ARRLFDEMP RN+V+ N ++   +  G  LE 
Sbjct: 147 LRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLET 206

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
              +  L          +      A AG+  +S+G+Q +    K GFG +V VS +++D 
Sbjct: 207 VEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDF 266

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           Y KC  +  A+ VFD M  +  V W +++  YA +G  EEA  +Y   R +G +   F  
Sbjct: 267 YGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMV 326

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
           S ++  C  L  L+  +  HA  VR     +I   SALVD Y K G IEDA  VF +M  
Sbjct: 327 SSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQ 386

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGLSERGWE 454
           +N+++WNA+I GY + G    A+ +F++M++     PN++T + VL+ACSR GL++ G+E
Sbjct: 387 RNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGYE 446

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
           +FQ+M     I+PR  HYAC+++LL R G+ + A+ +I+G P + + ++W ALL  C+++
Sbjct: 447 LFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMH 506

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
           G  ELG+ AAEKL+ ++P+   N+V+L N+  S+G+  EA +V + ++  G++  P  SW
Sbjct: 507 GKTELGRIAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRSW 566

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY 634
           I  K   HVF + D +H   +EI   + ++  ++   GY+P+ +  L D++E+E+    +
Sbjct: 567 ITWKNVVHVFQAKDTTHDMNREIQALLAKLKGQMQAAGYMPDTQYALYDLEEEEKESEVF 626

Query: 635 -HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
            HSEKLA+AFGLI      P++I+++ RIC DCH A K I+ + GREI+VRD + FHHFK
Sbjct: 627 QHSEKLALAFGLICIPPGIPIRIMKNLRICVDCHRAFKFISGIAGREIIVRDNNMFHHFK 686

Query: 694 DGMCSCGDYW 703
           +  CSC DYW
Sbjct: 687 NYECSCKDYW 696



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 170/349 (48%), Gaps = 12/349 (3%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           VL+ R  E +E +  L   GG     S   A  +AC G+ ++   ++ + ++   GF  D
Sbjct: 198 VLDGRPLETVEAYFGLRGAGGMPNVVSVC-AFFNACAGMTNLSLGEQFYGFVAKCGFGKD 256

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVS-CNMIIAGMIDSGDYLEAFLLFLDLW 223
           + + N V+  + +C  +  AR +FD M  RN VS C+M++A    +G   EAF ++L   
Sbjct: 257 VSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVA-YAQNGAEEEAFFVYLGAR 315

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
               +      ++++   AGL  + +G+ LH+ A++     N+FV+ AL+DMY KCG IE
Sbjct: 316 RAGEEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIE 375

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRIC 342
           DA+ VF EM ++  V WN +I GYA  G +  AL ++ +M        ++ T   ++  C
Sbjct: 376 DAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTAC 435

Query: 343 TRLASLEHAKQAHAGLV-RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS- 400
           +R    +   +    +  R G    I   + +VD   + G  E A  +   M  +  IS 
Sbjct: 436 SRGGLTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISV 495

Query: 401 WNALIAGYGNHGRGE----EAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           W AL+ G   HG+ E     A +LFE  L      NHV    +L++  R
Sbjct: 496 WGALLGGCKMHGKTELGRIAAEKLFE--LDPQDSGNHVLLSNMLASAGR 542



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 3/217 (1%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKM-GFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
           ++  A  + A+       +G+  H+ AL++       F+   L+++YSK      A    
Sbjct: 17  AQLLAGAVEAAIATRSARLGRAAHARALRLLSPALPPFLCAHLVNLYSKLDLPGAAAASL 76

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF-SMIIRICTRLASL 348
                 T V +   I+G A H    +AL  +  M   G++ + FTF S      +     
Sbjct: 77  AADPSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRS 136

Query: 349 EHAKQAHAGLVRHGF-GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
               Q HA  +R G+   D   + A +D Y K G +  AR +FD+M  +NV++WNA++  
Sbjct: 137 AAGTQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTN 196

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
               GR  E VE +  +   G  PN V+  A  +AC+
Sbjct: 197 AVLDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACA 233


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/547 (37%), Positives = 323/547 (59%), Gaps = 3/547 (0%)

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           GF+ +L++ + +  M+ + G++++A R+FD+MP+++ V+   +I G   +G+   A + F
Sbjct: 149 GFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAF 208

Query: 220 LDLWEE-FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
            D+  E           +++ AS GL+   + + +HSC +K GF   V V  AL DMY+K
Sbjct: 209 RDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAK 268

Query: 279 CGSIEDAQGVFD-EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
              +++A  V   +      V   ++I GY      E+AL ++ E+R  GV+ + FTFS 
Sbjct: 269 AADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSS 328

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           +I+ C   A LE   Q HA +++     D   +S L+D Y K G I  +  +F ++    
Sbjct: 329 MIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHT 388

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
            I+WNA I     HG G EA+  F++M  +G+RPNH+TF+++L+ACS +GL + G + F 
Sbjct: 389 DIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFY 448

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
           SM   H I+P+  HY+C+I++ GR G LDEA   I   P K     W +LL ACR+ GN 
Sbjct: 449 SMKDHHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNK 508

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
           ELG+ AA+ +  +EP+    +V L  IY S G+ ++   V + +R   ++ LP  SW++ 
Sbjct: 509 ELGEIAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDS 568

Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHS 636
            K+ HVF S D SH Q ++IY K++ +   I + GYVP+ + L  ++ D  +QR+L YHS
Sbjct: 569 NKKTHVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFLPCNLEDTAKQRILRYHS 628

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           E++AVAF LI+     P+ + ++ RIC DCH+A+K I+ V  R+I+VRD SRFHHF  G 
Sbjct: 629 ERIAVAFALISMPATKPIIVKKNLRICADCHSALKFISKVENRDIIVRDNSRFHHFVKGG 688

Query: 697 CSCGDYW 703
           CSCGDYW
Sbjct: 689 CSCGDYW 695



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 179/397 (45%), Gaps = 33/397 (8%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   +K +    + I+    N     A+  F  +  EG          +++SA  GL+  
Sbjct: 178 DQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDG 237

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD-EMPERNLVSCNMIIAG 205
              + + S ++ +GFE ++ +RN +  M+ +   M +A R+   +    N+VS   +I G
Sbjct: 238 WLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDG 297

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
            I++    +A L+F++L  +  +    TF++MI+  A   L+  G QLH+  +K     +
Sbjct: 298 YIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISD 357

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
            FVS  L+DMY KCG I  +  +F E+   T + WN  I   A HG+  EA+  +  M  
Sbjct: 358 SFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTS 417

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF----------GLDIVAN--SAL 373
           SG++ +H TF  ++  C+           HAGLV  G           G++      S +
Sbjct: 418 SGIRPNHITFVSLLTACS-----------HAGLVDEGLKYFYSMKDHHGIEPKGEHYSCI 466

Query: 374 VDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAG---YGNHGRGEEAVELFEQMLLNGM 429
           +D Y + GR+++A     +M  K N   W +L+      GN   GE A +   +     +
Sbjct: 467 IDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMK-----L 521

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
            P++      LS    S       +  + + RD++IK
Sbjct: 522 EPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIK 558



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 108/228 (47%), Gaps = 13/228 (5%)

Query: 235 ATMIRASAGLEL------ISVGKQLHS-CALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
           AT +R +A L+       + +G+ LH+   L      + F++  LI MYS C  +  A  
Sbjct: 15  ATSLRLAAPLQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVR 74

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           +FD M     V W T+++G   +    +AL  +  M  +G+    F  S   R    LA+
Sbjct: 75  LFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAA 134

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
                Q H   VR GF  ++   S L D YSK G + +A  VFD+M  K+ ++W A+I G
Sbjct: 135 RHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDG 194

Query: 408 YGNHGRGEEAVELFEQMLLNGM--RPNHVTFLAVLSACSRSGLSERGW 453
           Y  +G  E AV  F  M   G+     HV   +VLSA   SG  + GW
Sbjct: 195 YAKNGNLEAAVIAFRDMRREGLVGADQHV-LCSVLSA---SGGLKDGW 238


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/584 (38%), Positives = 344/584 (58%), Gaps = 11/584 (1%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S   + +++ C   R + + K+V   +   GF+    + N ++ M+ +CGM+ +A R+F+
Sbjct: 4   SRLLNKILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFN 63

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
            +P RN++S N +IAG  +  +  EA  LF ++ E+       T+++ ++A +  +    
Sbjct: 64  TLPVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGE 123

Query: 250 GKQLHSCALKMGFG--DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           G Q+H+  ++ GF       V+ AL+D+Y KC  + +A+ VFD + EK+ + W+T+I GY
Sbjct: 124 GMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGY 183

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL-- 365
           A     +EA+DL+ E+R+S  +MD F  S II +    A LE  KQ HA  ++  +GL  
Sbjct: 184 AQEDNLKEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLLE 243

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
             VANS L D Y K G   +A  +F +ML +NV+SW  +I GYG HG G +AVELF +M 
Sbjct: 244 MSVANSVL-DMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQ 302

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
            NG+ P+ VT+LAVLSACS SGL + G + F  +  + KIKP+  HYACM++LLGR G L
Sbjct: 303 ENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGRL 362

Query: 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
            EA  LI   P K    +W  LL+ CR++G++E+GK   E L   E    +NYV++ N+Y
Sbjct: 363 KEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVSNMY 422

Query: 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
             +G  KE+ ++  TL+RKGL+     SW+E+ K+ H+F +GD  H   +EI+  +  M 
Sbjct: 423 AHAGYWKESEKIRETLKRKGLKKEAGRSWVEMDKEIHIFYNGDGMHPLIEEIHEVLKEME 482

Query: 606 LEISKH-GYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLI----NTSDWTPLQIVQS 659
             + +  GYV      L DV+E+ +   L  HSEKLA+   L+           ++I ++
Sbjct: 483 KRVKEEMGYVHSINFSLHDVEEESKMESLRVHSEKLAIGLVLVRRGLKLKGERVIRIFKN 542

Query: 660 HRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            R+C DCH  IK ++ V     VVRDA+RFH F++G+CSCGDYW
Sbjct: 543 LRVCGDCHAFIKGLSKVLKIAFVVRDANRFHRFENGLCSCGDYW 586


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/595 (34%), Positives = 344/595 (57%), Gaps = 1/595 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           +R   EL + ++ E    V   T   ++ AC G   +  +K +  Y    GF  D  + N
Sbjct: 381 FRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVAN 440

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
             +  + +C  +  A R+F  M  + + S N +I     +G   ++  LFL + +   D 
Sbjct: 441 AFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDP 500

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              T  +++ A A L+ +  GK++H   L+ G   + F+  +L+ +Y +C S+   + +F
Sbjct: 501 DRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIF 560

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           D+M  K+ V WN +I G++ +    EALD + +M   G+K      + ++  C+++++L 
Sbjct: 561 DKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALR 620

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             K+ H+  ++     D     AL+D Y+K G +E ++++FD++  K+   WN +IAGYG
Sbjct: 621 LGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYG 680

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            HG G +A+ELFE M   G RP+  TFL VL AC+ +GL   G +    M   + +KP+ 
Sbjct: 681 IHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQNLYGVKPKL 740

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HYAC++++LGR G L EA  L+   P +    +W++LL++CR  G+LE+G+  ++KL  
Sbjct: 741 EHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLLE 800

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           +EP K  NYV+L N+Y   GK  E  +V + ++  GL     CSWIE+    + FL  D 
Sbjct: 801 LEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGMVYRFLVSDG 860

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINT 648
           S  ++K+I +   ++  +ISK GY P+   +L +++E+ + ++L  HSEKLA++FGL+NT
Sbjct: 861 SLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEGKIKILKSHSEKLAISFGLLNT 920

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +  T L++ ++ RIC DCHNAIKL++ V  R+I+VRD  RFHHFK+G+C+CGD+W
Sbjct: 921 AKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTCGDFW 975



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 116/362 (32%), Positives = 183/362 (50%), Gaps = 8/362 (2%)

Query: 107 NKRYREALELFEILEFEGGFDVGSS--TYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           N  +R+A+ LF  LE     D+     T   +  AC G+  +   + V +  L  G   D
Sbjct: 172 NALFRDAISLF--LELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSD 229

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW- 223
            ++ N ++ M+ +CG +  A ++F+ M  RNLVS N ++    ++G + E   +F  L  
Sbjct: 230 AFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLI 289

Query: 224 --EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
             EE       T  T+I A A +  + +G  +H  A K+G  + V V+ +L+DMYSKCG 
Sbjct: 290 SEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGY 349

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIR 340
           + +A+ +FD    K  V WNTII GY+  G      +L  EM R+  V+++  T   ++ 
Sbjct: 350 LGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLP 409

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C+    L   K+ H    RHGF  D +  +A V  Y+K   ++ A  VF  M  K V S
Sbjct: 410 ACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSS 469

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           WNALI  +  +G   ++++LF  M+ +GM P+  T  ++L AC+R      G EI   M 
Sbjct: 470 WNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFML 529

Query: 461 RD 462
           R+
Sbjct: 530 RN 531



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 130/467 (27%), Positives = 210/467 (44%), Gaps = 15/467 (3%)

Query: 88  TQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGF---DVGSSTYDALISACIGLR 144
           T   K  + I  ++  L  +    +AL L       G     D+       L+ AC   +
Sbjct: 47  TSHTKTHSPILQRLHNLCDSGNLNDALNLLHSHAQNGTVSSSDISKEAIGILLRACGHHK 106

Query: 145 SIREVKRVFSYM-LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           +I   ++V + +  S     D+ +  R++ M+  CG   D+R +FD   E++L   N ++
Sbjct: 107 NIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALL 166

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFA--TMIRASAGLELISVGKQLHSCALKMG 261
           +G   +  + +A  LFL+L    +D     F    + +A AG+  + +G+ +H+ ALK G
Sbjct: 167 SGYSRNALFRDAISLFLELLSA-TDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAG 225

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
              + FV  ALI MY KCG +E A  VF+ M  +  V WN+++   + +G   E   ++ 
Sbjct: 226 GFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFK 285

Query: 322 EM---RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378
            +    + G+  D  T   +I  C  +  +      H    + G   ++  N++LVD YS
Sbjct: 286 RLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYS 345

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL-NGMRPNHVTFL 437
           K G + +AR +FD    KNV+SWN +I GY   G      EL ++M     +R N VT L
Sbjct: 346 KCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVL 405

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
            VL ACS         EI     R   +K   +  A  +    +   LD A  +  G   
Sbjct: 406 NVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANA-FVAAYAKCSSLDCAERVFCGMEG 464

Query: 498 KTTKNMWAALLTACRVNG--NLELGKFAAEKLYGMEPEKLSNYVVLL 542
           KT  + W AL+ A   NG     L  F      GM+P++ +   +LL
Sbjct: 465 KTVSS-WNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLL 510


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/564 (35%), Positives = 333/564 (59%), Gaps = 5/564 (0%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVL---LMHVRCGMMIDARRLFDEMPERNLVSCNM 201
           S+RE+K++ ++ + T    DL +  + +    ++     M  A  LFD++P+ ++V  N 
Sbjct: 32  SLRELKQLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNT 91

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           +  G   +   L AF LF  +          TF ++++A A  + +  G+QLH  A+K+G
Sbjct: 92  MARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEGRQLHCLAIKLG 151

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
             +NV+V   LI+MY+ C  ++ A+ VFD++ E   V +N +I GYA      EAL L+ 
Sbjct: 152 LSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFR 211

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
           E++   +K    T   ++  C  L +L+  K  H  + ++GF   +  ++AL+D Y+K G
Sbjct: 212 ELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCG 271

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            ++DA  VF+ M  ++  +W+A+I  Y  HG G +AV LF++M   G  P+ +TFL +L 
Sbjct: 272 SLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLY 331

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           ACS +GL E G+E F  M   + + P   HY CM++LLGR G L+EA+  I G P + T 
Sbjct: 332 ACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTP 391

Query: 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            +W  LL+AC  +GN+ELGK   E+++ ++     +Y++L N+   +G+ ++   V + +
Sbjct: 392 ILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLM 451

Query: 562 RRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLL 621
             +G+  +P CS +EV    H F SGD  H  + ++++ +D ++ E+   GYVP    + 
Sbjct: 452 NERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGYVPNTSLVF 511

Query: 622 -PDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGR 679
             D++++E+ V L YHSEKLA+ FGL+NT   T +++V++ R+C DCH+A KLI+++  R
Sbjct: 512 HADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDR 571

Query: 680 EIVVRDASRFHHFKDGMCSCGDYW 703
           +I++RD  RFHHFKDG CSC DYW
Sbjct: 572 QIILRDVQRFHHFKDGKCSCEDYW 595



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 169/338 (50%), Gaps = 6/338 (1%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           A  LF  + F G F     T+ +L+ AC   +++ E +++    +  G   ++Y+   ++
Sbjct: 105 AFTLFTQILFSGLFP-DDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLI 163

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            M+  C  M  ARR+FD++ E  +V+ N +I G        EA  LF +L          
Sbjct: 164 NMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDV 223

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T  +++ + A L  + +GK +H    K GF   V V  ALIDMY+KCGS++DA  VF+ M
Sbjct: 224 TMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENM 283

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
           + + T  W+ +I  YA+HG+  +A+ L+ EMR +G + D  TF  ++  C+    +E   
Sbjct: 284 AVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGF 343

Query: 353 QAHAGLV-RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV-ISWNALIAGYGN 410
           +   G+  ++G    I     +VD   + GR+E+A      +  +   I W  L++  G+
Sbjct: 344 EYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGS 403

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA-CSRSG 447
           HG  E    + EQ+    +  +H     +LS  C+R+G
Sbjct: 404 HGNVELGKRVIEQIF--ELDDSHGGDYIILSNLCARAG 439


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/555 (36%), Positives = 326/555 (58%), Gaps = 2/555 (0%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           K++ +  L  G   D ++      M+ + G+  +A+RLFDEMP RN+   N  I+  +  
Sbjct: 78  KQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISNAVLD 137

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
           G   +A   F++      +    TF   + A A    + +G+QLH   ++ GF  +V V+
Sbjct: 138 GRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVA 197

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
             +ID+Y KC  +E A+ VF+ M  + +V W T++A    +   E+A  ++   R  G++
Sbjct: 198 NGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIE 257

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
           +  +  S +I     ++ LE  +  HA  V+     DI   SALVD Y K G IED   V
Sbjct: 258 LTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQV 317

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449
           F +M  +N++SWNA+I+GY + G  + A+ LFE+M    +  N+VT + VLSACSR G  
Sbjct: 318 FHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAV-ANYVTLICVLSACSRGGAV 376

Query: 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509
           + G EIF+SM   ++I+P A HYAC+ ++LGR G+++ A+  ++  P + T ++W ALL 
Sbjct: 377 KLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWGALLN 436

Query: 510 ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRML 569
           ACRV G  ELGK AA+ L+ ++P+   N+V+L N++ ++G+  EA  V + ++  G++  
Sbjct: 437 ACRVYGEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMKDVGIKKG 496

Query: 570 PACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ 629
             CSW+  K + HVF + D SH +  EI   + ++  E+   GY+P+    L D++E+E+
Sbjct: 497 AGCSWVTAKNKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAGYMPDTNYALYDLEEEEK 556

Query: 630 RV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
              + YHSEK+A+AFGLI      P++I ++ RIC DCH+A K I+ + GREI+VRD +R
Sbjct: 557 MTEVGYHSEKIALAFGLIALPPGVPIRITKNLRICGDCHSAFKFISGIVGREIIVRDNNR 616

Query: 689 FHHFKDGMCSCGDYW 703
           FH F+D  CSC D+W
Sbjct: 617 FHRFRDSQCSCRDFW 631



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 188/394 (47%), Gaps = 8/394 (2%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+ +  +   A+ L    P R +V+   +I+G + +G +  A L F  +  E       T
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFT 60

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
           F    +AS  L L   GKQ+H+ ALK+G  ++ FV C+  DMYSK G   +AQ +FDEM 
Sbjct: 61  FPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMP 120

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
            +    WN  I+   L G   +A+D + E R  G + D  TF   +  C     L+  +Q
Sbjct: 121 PRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQ 180

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            H  ++R GF  D+   + ++D Y K   +E A  VF+ M  +N +SW  ++A    +  
Sbjct: 181 LHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDE 240

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
            E+A  +F      G+        +V+SA +     E G  +  +++    ++      +
Sbjct: 241 KEKACVVFLMGRKEGIELTDYMVSSVISAYAGISGLEFGRSV-HALAVKACVEGDIFVGS 299

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533
            ++++ G+ G +++   +    P +   + W A+++     G++++     E+   M+ E
Sbjct: 300 ALVDMYGKCGSIEDCEQVFHEMPERNLVS-WNAMISGYAHQGDVDMAMTLFEE---MQSE 355

Query: 534 KLSNYVVLLNIYNS---SGKLKEAAEVIRTLRRK 564
            ++NYV L+ + ++    G +K   E+  ++R +
Sbjct: 356 AVANYVTLICVLSACSRGGAVKLGNEIFESMRDR 389



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 179/353 (50%), Gaps = 14/353 (3%)

Query: 101 IEKLVLNKRYREALELFEILEFEG-GFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           I   VL+ R  +A++ F  +EF   G +    T+ A ++AC   R +   +++   ++ +
Sbjct: 131 ISNAVLDGRPGKAIDKF--IEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRS 188

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           GFE D+ + N ++ ++ +C  +  A  +F+ M  RN VS   ++A    + +  +A ++F
Sbjct: 189 GFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVF 248

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
           L   +E  +      +++I A AG+  +  G+ +H+ A+K     ++FV  AL+DMY KC
Sbjct: 249 LMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKC 308

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           GSIED + VF EM E+  V WN +I+GYA  G  + A+ L+ EM+   V  ++ T   ++
Sbjct: 309 GSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQSEAVA-NYVTLICVL 367

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVAN--SALVDFYSKWGRIEDARHVFDKMLCKN 397
             C+R  +++   +    + R  + ++  A   + + D   + G +E A     KM  + 
Sbjct: 368 SACSRGGAVKLGNEIFESM-RDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRP 426

Query: 398 VIS-WNALIAG---YGNHGRGEEAVE-LFEQMLLNGMRPNHVTFLAVLSACSR 445
            IS W AL+     YG    G+ A + LF+  L      NHV    + +A  R
Sbjct: 427 TISVWGALLNACRVYGEPELGKIAADNLFK--LDPKDSGNHVLLSNMFAAAGR 477


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/633 (35%), Positives = 370/633 (58%), Gaps = 13/633 (2%)

Query: 78  EELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALI 137
           ++L+ES+    +   P+    +Q+ +L   ++YREAL L+  +     F   + T+  L+
Sbjct: 4   DQLRESAAAPPRWN-PTTAWNNQLRQLSKQRQYREALTLYRHM-LRSSFFPNTFTFPFLL 61

Query: 138 SACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLV 197
            +C  L       ++ ++++ TG +PD Y R+ ++  + +C +   AR++FDEMP   + 
Sbjct: 62  KSCAFLSLPLAASQLHAHVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPNPTIC 121

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD-------CGSRTFATMIRASAGLELISVG 250
             N +I+G   +   L A  LF  +  E  D         + T  +++   +    +++G
Sbjct: 122 Y-NAMISGYSFNSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIG 180

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
             LH C ++ GF  ++ V+ +L+ MY KCG +E A+ VFDEM  +  + WN +I+GYA +
Sbjct: 181 VCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQN 240

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G++   L++Y EM+ SGV  D  T   ++  C  L +    ++    + R GFG +    
Sbjct: 241 GHARCVLEVYSEMKLSGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLR 300

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           +ALV+ Y++ G +  AR VFD+   K+V+SW A+I GYG HG GE A+ELF++M+ + +R
Sbjct: 301 NALVNMYARCGNLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVR 360

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           P+   F++VLSACS +GL++RG E F+ M R + ++P   HY+C+++LLGR G L+EA  
Sbjct: 361 PDKTVFVSVLSACSHAGLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVN 420

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
           LI+    K    +W ALL AC+++ N E+ + A + +  +EP  +  YV+L NIY  +  
Sbjct: 421 LIKSMKVKPDGAVWGALLGACKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANN 480

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
           L+  + V   +R + LR  P  S++E K + ++F SGD SH QTK+IYR +D +   + K
Sbjct: 481 LEGVSRVRVMMRERKLRKDPGYSYVEYKGKMNLFYSGDLSHPQTKQIYRMLDELE-SLVK 539

Query: 611 HGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
             + P EK       E+       HSEKLA+AF L+NT   T + ++++ R+C DCH  I
Sbjct: 540 EVHPPNEKC--QGRSEELLIGTGVHSEKLAIAFALLNTKSGTEITVMKNLRVCVDCHLFI 597

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           KL++ +  R+ +VRDA+RFHHF+DG+CSC DYW
Sbjct: 598 KLVSKIVNRQFIVRDATRFHHFRDGICSCKDYW 630


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/576 (36%), Positives = 343/576 (59%), Gaps = 5/576 (0%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S+ Y+A++SA   LR +++     ++++ TG      +  ++L +    G +   RRLF 
Sbjct: 10  SAEYEAVVSAGPHLRRLQQAH---AHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFR 66

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
            + + +    N +I    + G  L+A   +  +        + TF ++I+A A L L+ +
Sbjct: 67  SVSDPDSFLFNSLIKASSNFGFSLDAVFFYRRMLHSRIVPSTYTFTSVIKACADLSLLRL 126

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G  +HS     G+  N FV  AL+  Y+K  +   A+ VFDEM +++ + WN++I+GY  
Sbjct: 127 GTIVHSHVFVSGYASNSFVQAALVTFYAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQ 186

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +G + EA++++ +MR+SG + D  TF  ++  C++L SL+     H  +V  G  +++V 
Sbjct: 187 NGLASEAVEVFNKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVL 246

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            ++LV+ +S+ G +  AR VFD M   NV+SW A+I+GYG HG G EA+E+F +M   G+
Sbjct: 247 ATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGV 306

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
            PN VT++AVLSAC+ +GL   G  +F SM +++ + P   H+ CM+++ GR GLL+EA+
Sbjct: 307 VPNRVTYVAVLSACAHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAY 366

Query: 490 ALIRG-APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
             +RG +  +    +W A+L AC+++ N +LG   AE L   EPE   +YV+L N+Y  +
Sbjct: 367 QFVRGLSSEELVPAVWTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMYALA 426

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           G++     V   + ++GL+     S I+V+ + ++F  GD+SH +T EIY  +D +M   
Sbjct: 427 GRMDRVESVRNVMIQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDELMWRC 486

Query: 609 SKHGYVP-EEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
              GY P  E  +    +E+ +  L YHSEKLAVAFGL+ T     L+IV++ RIC DCH
Sbjct: 487 KDAGYAPAPESAMHELEEEEREYALRYHSEKLAVAFGLMKTCHGVTLRIVKNLRICEDCH 546

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +AIK I++V  REI+VRD  RFHHF++G CSC DYW
Sbjct: 547 SAIKFISVVMNREIIVRDKLRFHHFREGSCSCSDYW 582



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 14/220 (6%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I     N    EA+E+F  +   GG +  S+T+ +++SAC  L S+     +   ++ 
Sbjct: 179 SMISGYEQNGLASEAVEVFNKMRESGG-EPDSATFVSVLSACSQLGSLDLGCWLHECIVG 237

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           TG   ++ +   ++ M  RCG +  AR +FD M E N+VS   +I+G    G  +EA   
Sbjct: 238 TGIRMNVVLATSLVNMFSRCGDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEA--- 294

Query: 219 FLDLWEEFSDCG----SRTFATMIRASAGLELISVGKQLHSCALKMGFG--DNVFVSCAL 272
            ++++     CG      T+  ++ A A   LI+ G+ + + ++K  +G    V     +
Sbjct: 295 -MEVFHRMKACGVVPNRVTYVAVLSACAHAGLINEGRLVFA-SMKQEYGVVPGVEHHVCM 352

Query: 273 IDMYSKCGSIEDAQGVFDEMSEKTTVG--WNTIIAGYALH 310
           +DM+ + G + +A      +S +  V   W  ++    +H
Sbjct: 353 VDMFGRGGLLNEAYQFVRGLSSEELVPAVWTAMLGACKMH 392


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/574 (36%), Positives = 328/574 (57%), Gaps = 33/574 (5%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           +P +   N ++  +++ GM+ +A+ LFD MP RN +S   +IAG   +G   EA  L   
Sbjct: 349 DPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQA 408

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           L          +  +   A + +  +  G+Q+HS A+K G   N +V  ALI MY KC +
Sbjct: 409 LHRNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRN 468

Query: 282 -------------------------------IEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
                                          +EDA+ +FD M  +  V W TII+ YA  
Sbjct: 469 MEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQA 528

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
              +EA++ +  M     K +    ++++ +C  L S +  +Q H   ++HG   +++  
Sbjct: 529 ERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVA 588

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           +AL+  Y K G   D+  VFD M  +++ +WN  I G   HG G EA++++E M   G+ 
Sbjct: 589 NALMSMYFKCG-CADSHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVL 647

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           PN VTF+ +L+ACS +GL + GW+ F+SMSRD+ + P   HYACM++LLGR G +  A  
Sbjct: 648 PNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEK 707

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
            I   P +    +W+ALL AC+++ N E+G+ AAEKL+  EP    NYV+L NIY+S G 
Sbjct: 708 FIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGM 767

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
             E AE+ + ++++G+   P CSW++++ + H F++GD+ H + +EI   +  +   +  
Sbjct: 768 WVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRG 827

Query: 611 HGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
            GYVP+ + +L D+D EQ++  L YHSEKLAVA+GL+ T    P+QI+++ RIC DCH  
Sbjct: 828 TGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTF 887

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           IK ++ VT R+I +RD +RFHHF++G CSCGD+W
Sbjct: 888 IKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 129/510 (25%), Positives = 226/510 (44%), Gaps = 73/510 (14%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   V  +++ +  ++F ++  EG      S + +++SA  GL+ +  ++ +   +L TG
Sbjct: 195 ISGYVRIEQHGKGWDIFRMMHHEGA-SPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTG 253

Query: 161 FEPDLYMRNRVLLMHVRCGMMID-ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           FE D+ +   +L ++ R    +D A + FD M ERN  + + +IA +   G    A  ++
Sbjct: 254 FESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVY 313

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLE-LISVGKQLHSCALKMGFGDNVFVSC-ALIDMYS 277
                     G     ++   +A L  L   G+   +  L     D + VS  A+I  Y 
Sbjct: 314 ----------GRDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYM 363

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           + G +++A+ +FD M  + T+ W  +IAGYA +G SEEALDL   +  +G+     + + 
Sbjct: 364 QNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTS 423

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
               C+ + +LE  +Q H+  V+ G   +    +AL+  Y K   +E  R VF++M  K+
Sbjct: 424 SFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKD 483

Query: 398 VISWNALIA-------------------------------GYGNHGRGEEAVELFEQMLL 426
            +SWN+ IA                                Y    RG+EAVE F+ ML 
Sbjct: 484 TVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLH 543

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
              +PN      +LS C   G ++ G +I       H +   A+ +    EL+    L+ 
Sbjct: 544 EHEKPNSPILTILLSVCGGLGSAKLGQQI-------HTV---AIKHGMDSELIVANALMS 593

Query: 487 EAFALIRGAPFKTTKNM-------WAALLTACRVNGNLELGKFAAEKLY------GMEPE 533
             F        K   +M       W   +T C  +G   LG+  A K+Y      G+ P 
Sbjct: 594 MYFKCGCADSHKVFDSMEERDIFTWNTFITGCAQHG---LGR-EAIKMYEHMESVGVLPN 649

Query: 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           +++ +V LLN  + +G + E  +  +++ R
Sbjct: 650 EVT-FVGLLNACSHAGLVDEGWQFFKSMSR 678



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 107/447 (23%), Positives = 210/447 (46%), Gaps = 30/447 (6%)

Query: 122 FEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMM 181
           F+G  +  +  ++A++S  +    I   +R+F  M S     D+   N ++  +     M
Sbjct: 118 FDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSR----DVTSWNSMVTGYCHSRQM 173

Query: 182 IDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRAS 241
           +DA  LF +MP+RNLV+  ++I+G +    + + + +F  +  E +      FA+++ A 
Sbjct: 174 VDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAV 233

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED-AQGVFDEMSEKTTVGW 300
            GL+ + V + L    LK GF  +V +  +++++Y++  S  D A   FD M E+    W
Sbjct: 234 TGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTW 293

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           +T+IA  +  G  + A+ +Y       +       + + R C R+       +     + 
Sbjct: 294 STMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLAR-CGRITEARILFEQIPDPI- 351

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
                 +V+ +A++  Y + G +++A+ +FD+M  +N ISW  +IAGY  +GR EEA++L
Sbjct: 352 ------VVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDL 405

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA----MHYAC-- 474
            + +  NGM P+  +  +   ACS  G  E G ++       H +  +A      Y C  
Sbjct: 406 LQALHRNGMLPSLSSLTSSFLACSHIGALETGRQV-------HSLAVKAGCQFNSYVCNA 458

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534
           +I + G+   ++    +      K T + W + + A   N  LE  +   +    M    
Sbjct: 459 LISMYGKCRNMEYVRQVFNRMRVKDTVS-WNSFIAALVQNNMLEDARHIFDN---MLSRD 514

Query: 535 LSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           + ++  +++ Y  + +  EA E  +T+
Sbjct: 515 VVSWTTIISAYAQAERGDEAVEFFKTM 541



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 136/298 (45%), Gaps = 7/298 (2%)

Query: 120 LEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG 179
           L  + G    S   +ALIS     R++  V++VF+ M       D    N  +   V+  
Sbjct: 443 LAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVK----DTVSWNSFIAALVQNN 498

Query: 180 MMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIR 239
           M+ DAR +FD M  R++VS   II+    +    EA   F  +  E     S     ++ 
Sbjct: 499 MLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLS 558

Query: 240 ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
              GL    +G+Q+H+ A+K G    + V+ AL+ MY KCG   D+  VFD M E+    
Sbjct: 559 VCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGC-ADSHKVFDSMEERDIFT 617

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           WNT I G A HG   EA+ +Y  M   GV  +  TF  ++  C+    ++   Q    + 
Sbjct: 618 WNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMS 677

Query: 360 R-HGFGLDIVANSALVDFYSKWGRIEDA-RHVFDKMLCKNVISWNALIAGYGNHGRGE 415
           R +G    +   + +VD   + G ++ A + ++D  +  + + W+AL+     H   E
Sbjct: 678 RDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAE 735



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 157/384 (40%), Gaps = 94/384 (24%)

Query: 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
           R G + +AR +FD MP R++++ N +I+   +SG   +A +LF                 
Sbjct: 45  RLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILF----------------- 87

Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
                   + IS              G NV  +  L+  Y++ G + DA+ VFD M E+ 
Sbjct: 88  --------DAIS--------------GGNVRTATILLSGYARLGRVLDARRVFDGMPERN 125

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
           TV WN +++ Y  +G    A  L+  M                                 
Sbjct: 126 TVAWNAMVSCYVQNGDITMARRLFDAMPSR------------------------------ 155

Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY---GNHGR 413
                    D+ + +++V  Y    ++ DA ++F +M  +N+++W  +I+GY     HG+
Sbjct: 156 ---------DVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGK 206

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG-WEIFQSMSRDHKIKPRAMHY 472
           G    ++F  M   G  P+   F +VLSA   +GL + G  E+ + +      +   +  
Sbjct: 207 G---WDIFRMMHHEGASPDQSNFASVLSAV--TGLQDLGVLEVLRPLVLKTGFESDVVIG 261

Query: 473 ACMIELLGREG-LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
             ++ +  R+   LD A     G   +  +  W+ ++ A    G ++    AA  +YG +
Sbjct: 262 TSILNVYTRDASALDIAIKFFDGM-VERNEYTWSTMIAALSHGGRID----AAIAVYGRD 316

Query: 532 PEK-LSNYVVLLNIYNSSGKLKEA 554
           P K + +   LL      G++ EA
Sbjct: 317 PVKSIPSQTALLTGLARCGRITEA 340



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 98/189 (51%), Gaps = 12/189 (6%)

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
           A I   ++ G + +A+ VFD M  +  + WN++I+ Y   G  E+A  L+  +    V+ 
Sbjct: 38  ARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR- 96

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
              T ++++    RL  +  A++   G+       + VA +A+V  Y + G I  AR +F
Sbjct: 97  ---TATILLSGYARLGRVLDARRVFDGMPER----NTVAWNAMVSCYVQNGDITMARRLF 149

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
           D M  ++V SWN+++ GY +  +  +A  LF+QM     + N VT+  ++S   R     
Sbjct: 150 DAMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQM----PQRNLVTWTVMISGYVRIEQHG 205

Query: 451 RGWEIFQSM 459
           +GW+IF+ M
Sbjct: 206 KGWDIFRMM 214



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 50/204 (24%), Positives = 96/204 (47%), Gaps = 17/204 (8%)

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
            LD  A+SA +   ++ GR+ +AR VFD M  +++I+WN++I+ Y N G  E+A  LF+ 
Sbjct: 30  ALDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDA 89

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           +    +R    T   +LS  +R G       +F  M   + +   AM  +C ++     G
Sbjct: 90  ISGGNVR----TATILLSGYARLGRVLDARRVFDGMPERNTVAWNAM-VSCYVQ----NG 140

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTA-CRVNGNLELGKFAAEKLYGMEPEK-LSNYVVL 541
            +  A  L    P +   + W +++T  C     ++     A  L+   P++ L  + V+
Sbjct: 141 DITMARRLFDAMPSRDVTS-WNSMVTGYCHSRQMVD-----AWNLFKQMPQRNLVTWTVM 194

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKG 565
           ++ Y    +  +  ++ R +  +G
Sbjct: 195 ISGYVRIEQHGKGWDIFRMMHHEG 218


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/607 (35%), Positives = 351/607 (57%), Gaps = 4/607 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S +   V N+ Y EA++ F  +  + GF+   +   +L+SA   L  +   + V +Y + 
Sbjct: 335 SMLSCYVQNRLYAEAIDFFGEM-VQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVK 393

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
              + DL + N ++ M+++C  +  + R+FD M  ++ VS   IIA    S  Y EA   
Sbjct: 394 QRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGK 453

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F    +E          +++ A +GL+ IS+ KQ+HS A++ G  D + +   +ID+Y +
Sbjct: 454 FRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGLLD-LILKNRIIDIYGE 512

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG +  A  +F+ + +K  V W +++  +A +G   EA+ L+ +M ++G++ D      I
Sbjct: 513 CGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGI 572

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +     L+SL   K+ H  L+R  F ++    S+LVD YS  G +  A  VFD+  CK+V
Sbjct: 573 LGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDV 632

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           + W A+I   G HG G++A+ +F++ML  G+ P+HV+FLA+L ACS S L + G      
Sbjct: 633 VLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDM 692

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M   +K++P   HYAC+++LLGR G  +EA+  I+  P +    +W ALL ACR++ N E
Sbjct: 693 MVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHE 752

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           L   A +KL  +EP+   NYV++ N++   GK     E+   +  +GLR  PACSWIE+ 
Sbjct: 753 LAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIG 812

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG-YVPEEKTLLPDVDEQEQ-RVLSYHS 636
              H F + D SH  ++ I+ K+  +  ++ + G YV +   +L DV E+E+  +L  HS
Sbjct: 813 NTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHS 872

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           E+LA++FGLI+T+  TPL+I ++ R+C DCH   KL++ +  REIVVRDA+RFHHF  G 
Sbjct: 873 ERLAISFGLISTASGTPLRIAKNLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGT 932

Query: 697 CSCGDYW 703
           CSCGD+W
Sbjct: 933 CSCGDFW 939



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 194/378 (51%), Gaps = 9/378 (2%)

Query: 86  PDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRS 145
           P  + K P A   + + +L  +   REAL         G     +  Y  ++      R+
Sbjct: 11  PTPRRKLPPASAGASLRQLCKDGDLREALRQLAARSARGRAPPPTDHYGWVLDLVAVRRA 70

Query: 146 IREVKRVFSYMLSTGFEPD---LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           + E +++ ++ ++TG   D    ++  ++L M+ +CG + DA RLFD MP R + S N +
Sbjct: 71  VSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNAL 130

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCAL 258
           I   + SG   EA  ++  +       G+     T A++++A         G ++H  A+
Sbjct: 131 IGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAV 190

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYSEEAL 317
           K G   +  V+ AL+ MY+KCG ++ A  VF+ M +   V  WN+ I+G   +G   EAL
Sbjct: 191 KSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEAL 250

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
           DL+  M+  G  M+ +T   ++++C  LA L H ++ HA L++ G   +I  N+ LV  Y
Sbjct: 251 DLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLV-MY 309

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           ++ G ++ A  VF ++  K+ ISWN++++ Y  +    EA++ F +M+ NG  P+H   +
Sbjct: 310 ARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIV 369

Query: 438 AVLSACSRSGLSERGWEI 455
           ++LSA    G    G E+
Sbjct: 370 SLLSAVGHLGRLINGREV 387



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 131/515 (25%), Positives = 253/515 (49%), Gaps = 23/515 (4%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N  + EAL+LF  ++ +G F + S T   ++  C  L  +   + + + +L 
Sbjct: 235 SAISGCVQNGMFLEALDLFRRMQSDG-FSMNSYTTVGVLQVCAELAQLNHGRELHAALLK 293

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G E ++   N +L+M+ RCG +  A R+F E+ +++ +S N +++  + +  Y EA   
Sbjct: 294 CGTEFNIQC-NALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDF 352

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F ++ +   +       +++ A   L  +  G+++H+ A+K     ++ ++  L+DMY K
Sbjct: 353 FGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIK 412

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           C S+E +  VFD M  K  V W TIIA YA      EA+  +   +  G+K+D      I
Sbjct: 413 CYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSI 472

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C+ L S+   KQ H+  +R+G  LD++  + ++D Y + G +  A ++F+ +  K++
Sbjct: 473 LEACSGLKSISLLKQVHSYAIRNGL-LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDI 531

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           ++W +++  +  +G   EAV LF +ML  G++P+ V  + +L A +      +G EI   
Sbjct: 532 VTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGF 591

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           + R  K        + ++++    G ++ A  +   A  K    +W A++ A  ++G+ +
Sbjct: 592 LIRG-KFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVV-LWTAMINATGMHGHGK 649

Query: 519 LGKFAAEKLY--GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
              +  +++   G+ P+ +S   +L    +S  KL +  +    +     ++ P   W  
Sbjct: 650 QAIYIFKRMLETGVSPDHVSFLALLYACSHS--KLVDEGKFYLDMMVSKYKLQP---W-- 702

Query: 577 VKKQPH----VFLSGDQSHVQTKEIYRKVDRMMLE 607
              Q H    V L G     QT+E Y+ +  M LE
Sbjct: 703 ---QEHYACVVDLLGRSG--QTEEAYKFIKSMPLE 732



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 152/325 (46%), Gaps = 22/325 (6%)

Query: 247 ISVGKQLHSCALKMG-FGDN--VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           +S G+QLH+ A+  G  GD+   F++  L+ MY KCG + DA  +FD M  +T   WN +
Sbjct: 71  VSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNAL 130

Query: 304 IAGYALHGYSEEALDLYYEMRDS----GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           I      G + EA+ +Y  MR S    G   D  T + +++ C          + H   V
Sbjct: 131 IGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAV 190

Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-CKNVISWNALIAGYGNHGRGEEAV 418
           + G     +  +ALV  Y+K G ++ A  VF+ M   ++V SWN+ I+G   +G   EA+
Sbjct: 191 KSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEAL 250

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR---DHKIKPRAMHYACM 475
           +LF +M  +G   N  T + VL  C+       G E+  ++ +   +  I+  A     +
Sbjct: 251 DLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNA-----L 305

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL--ELGKFAAEKLY-GMEP 532
           + +  R G +D A  + R    K   + W ++L+ C V   L  E   F  E +  G  P
Sbjct: 306 LVMYARCGWVDSALRVFREIGDKDYIS-WNSMLS-CYVQNRLYAEAIDFFGEMVQNGFNP 363

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEV 557
           +  +  V LL+     G+L    EV
Sbjct: 364 DH-ACIVSLLSAVGHLGRLINGREV 387


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/579 (35%), Positives = 346/579 (59%), Gaps = 3/579 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G  + + T  +++  C     +     +  ++L  G + D+++ N ++ M+ + G + DA
Sbjct: 217 GVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDA 276

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           + +FD+M  R+LVS N IIA    + D   A   F  +          T  ++    + L
Sbjct: 277 QMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQL 336

Query: 245 ELISVGKQLHSCALKMGFGD-NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
               + + +    ++  + D +V +  AL++MY+K G +  A  VFD++  K T+ WNT+
Sbjct: 337 SDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTL 396

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKM-DHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           + GY  +G + EA+D Y  M +    + +  T+  II   + + +L+   + HA L+++ 
Sbjct: 397 VTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNS 456

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
             LD+   + L+D Y K GR+EDA  +F ++     + WNA+IA  G HGRGEEA++LF+
Sbjct: 457 LYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFK 516

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
            ML   ++ +H+TF+++LSACS SGL + G + F  M +++ IKP   HY CM++LLGR 
Sbjct: 517 DMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRA 576

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
           G L++A+ L+R  P +   ++W ALL+AC++ GN ELG  A+++L  ++ E +  YV+L 
Sbjct: 577 GYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLS 636

Query: 543 NIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVD 602
           NIY ++ K +   +V    R +GLR  P  S + V  +  VF +G+Q+H +  EIY+++ 
Sbjct: 637 NIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELK 696

Query: 603 RMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHR 661
            +  ++   GYVP+   +  D++E E +++L+ HSE+LA+AFG+I+T   +P++I ++ R
Sbjct: 697 VLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLR 756

Query: 662 ICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +C DCHNA K I+ ++ REIVVRD++RFHHFKDG+CSC 
Sbjct: 757 VCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSCA 795



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 230/453 (50%), Gaps = 31/453 (6%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           + ++AL ++C+   ++   K++ + +L  G   ++ +  +++ ++V  G +  +R  FD 
Sbjct: 23  ADFNALFNSCV---NVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDY 79

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS-------RTFATMIRASAG 243
           + ++N+ S N II+  +  G Y EA      L   FS CG         TF  +++A   
Sbjct: 80  IHKKNIFSWNSIISAYVRFGKYHEAMNCVNQL---FSMCGGGHLRPDFYTFPPILKACVS 136

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L     GK++H C  KMGF D+VFV+ +L+ +YS+ G ++ A  VF +M  K    WN +
Sbjct: 137 L---VDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAM 193

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I+G+  +G +  AL +   M+  GVKMD  T + I+ +C +   + +    H  +++HG 
Sbjct: 194 ISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGL 253

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             D+  ++AL++ YSK+GR++DA+ VFD+M  ++++SWN++IA Y  +     A+  F+ 
Sbjct: 254 DSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKG 313

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           M L G+RP+ +T +++ S  S+         I   + R   +    +    ++ +  + G
Sbjct: 314 MQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLG 373

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL--YGMEPE------KL 535
            ++ A  +    P K T + W  L+T    NG       A+E +  Y M  E        
Sbjct: 374 YMNCAHTVFDQLPRKDTIS-WNTLVTGYTQNG------LASEAIDAYNMMEECRDTIPNQ 426

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
             +V ++  Y+  G L++  ++   L +  L +
Sbjct: 427 GTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYL 459


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/594 (36%), Positives = 345/594 (58%), Gaps = 38/594 (6%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +ALE F  ++ E GF+    T+ +++ AC  L  I+  K++   +++T     +++ N +
Sbjct: 138 QALEFFVRMQ-EEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNAL 196

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
             M+ +CG +  AR LFD M  +N+VS N +I+G + +G       LF ++         
Sbjct: 197 TNMYAKCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEM--------- 247

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
                    S+GL                   D V +S  ++  Y +CG I++A   F E
Sbjct: 248 --------QSSGL-----------------MPDQVTIS-NILSAYFQCGYIDEACKTFRE 281

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           + EK  V W T++ G A +G  E+AL L+ EM    V+ D+FT S ++  C RLASL   
Sbjct: 282 IKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQG 341

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           +  H   V  G   D++ +SALVD YSK G   DA  VF +ML +NVISWN++I GY  +
Sbjct: 342 QAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQN 401

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G+  EA+ L+E+ML   ++P+++TF+ VLSAC  +GL ERG   F S+S+ H + P   H
Sbjct: 402 GKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDH 461

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           Y+CMI LLGR G +D+A  LI+   F+    +W+ LL+ CR+N ++  G+ AA  L+ ++
Sbjct: 462 YSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELD 521

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P     Y++L NIY + G+ K+ A V   ++   ++   A SWIE+  Q H F++ D++H
Sbjct: 522 PHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTH 581

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSD 650
            +T++IY +++R++ ++ + G+ P+   +L DV E+E+   + YHSEKLA+AF LI    
Sbjct: 582 SETEQIYEELNRLIKKLQESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPH 641

Query: 651 W-TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             TP++I+++ R+C DCH  +K ++ +  R I++RD +RFHHF +G CSC D W
Sbjct: 642 GRTPIRIMKNIRVCGDCHVFMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 167/307 (54%), Gaps = 11/307 (3%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           +VF   A++  YSK G++ED + VFD+MS    V +NT+IAG++ +G S +AL+ +  M+
Sbjct: 88  DVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQ 147

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           + G +   +T   ++  C++L  ++  KQ H  +V    G  +   +AL + Y+K G ++
Sbjct: 148 EEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALD 207

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            AR +FD+M+ KNV+SWN++I+GY  +G+ E   +LF +M  +G+ P+ VT   +LSA  
Sbjct: 208 QARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNILSAYF 267

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN-- 502
           + G  +   + F+ +    K+    M   C      + G  ++A  L R    +  +   
Sbjct: 268 QCGYIDEACKTFREIKEKDKVCWTTMMVGC-----AQNGKEEDALLLFREMLLENVRPDN 322

Query: 503 -MWAALLTACRVNGNLELGKFAAEK--LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
              ++++++C    +L  G+    K  ++G++ + L +   L+++Y+  G+  +A  V +
Sbjct: 323 FTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVS-SALVDMYSKCGETADAWIVFK 381

Query: 560 TLRRKGL 566
            +  + +
Sbjct: 382 RMLTRNV 388



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 118/284 (41%), Gaps = 41/284 (14%)

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG-LDIVANSAL 373
           EA+D  Y    +  +    +++ ++  C R   +  AK+    +  H +   D    + L
Sbjct: 9   EAIDALYSRGTANSE----SYTRLLLQCVRSNDVVQAKRLQTHMDLHLYQPTDTFLQNRL 64

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNAL----------------------------- 404
           +  Y+K G + DAR +FDKM  ++V SWNA+                             
Sbjct: 65  LHLYAKSGNLSDARDLFDKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYN 124

Query: 405 --IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
             IAG+  +G   +A+E F +M   G      T ++VL ACS+    +RG +I   +   
Sbjct: 125 TVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVAT 184

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK- 521
             +      +  +  +  + G LD+A  L      K   + W ++++    NG  E    
Sbjct: 185 -SLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKNVVS-WNSMISGYLQNGQPETCTK 242

Query: 522 -FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
            F   +  G+ P++++    +L+ Y   G + EA +  R ++ K
Sbjct: 243 LFCEMQSSGLMPDQVT-ISNILSAYFQCGYIDEACKTFREIKEK 285


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/597 (37%), Positives = 340/597 (56%), Gaps = 7/597 (1%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R+R+AL L  + +F     V SS     ++A   +RS    ++   Y +  G     Y+ 
Sbjct: 96  RHRDALALLRVADFGLNEYVLSSA----VAATAHVRSYDMGRQCHGYAIKAGLAEHPYVC 151

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           + VL M+ +C  M +A ++FD +   N+ + N +I G +D G    +  +   +      
Sbjct: 152 SAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQ 211

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               ++  ++   A  + + +G Q+H+ ALK     NV+V  AL+DMY KC    +A  V
Sbjct: 212 WDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRV 271

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F+ + EK  V W  I+  Y  +   E+AL L+ +M   GV+ + FT+++ +  C  LA+L
Sbjct: 272 FEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATL 331

Query: 349 EHAKQAHAGLVRHG-FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           ++     A  ++ G +GL  V N AL++ YSK G +EDAR VF  M C++V+SWN++I G
Sbjct: 332 KNGNALGACTMKTGHWGLLPVCN-ALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIG 390

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           Y +HGR  EA+E F  ML     P++VTF+ VLSAC++ GL + G+     M ++  +KP
Sbjct: 391 YAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKP 450

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
              HY CM+ LL R G LDEA   I      T    W +LL++C+V  N  LG   AE++
Sbjct: 451 GKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQI 510

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
           + ++P+ +  YV+L N+Y  + +     +V R +R  G+R  P  SWI+V  + HVF S 
Sbjct: 511 FQLKPKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSE 570

Query: 588 DQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLI 646
           D+ H   ++I +K+  ++ +I   GYVP     L DV DEQ++  L YHSEKLA+AFGLI
Sbjct: 571 DKKHPYMEQITKKLQELIDKIKVIGYVPNIAVALHDVEDEQKEEHLMYHSEKLALAFGLI 630

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            T     ++I+++ RIC DCH AIKLI++ TGR IVVRD  RFH  +DG+CSC DYW
Sbjct: 631 RTPKGEAIRIMKNVRICDDCHVAIKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW 687



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 159/331 (48%), Gaps = 12/331 (3%)

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           +S+GK +H+  ++    D V  +  LI +Y KCG +  A+ VFD M  +  V  N +++G
Sbjct: 32  LSLGKAVHARVVRAARFDVVQYN-NLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSG 90

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           YA  G   +AL L   +R +   ++ +  S  +     + S +  +Q H   ++ G    
Sbjct: 91  YASSGRHRDALAL---LRVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEH 147

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
               SA++  Y +   +++A  VFD +   NV ++N++I G+ + G+ + +  +   M+ 
Sbjct: 148 PYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVR 207

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIF-QSMSRDHKIKPRAMHYACMIELLGREGLL 485
           N  + +HV+++AVL  C+ +     G ++  Q++ R  +++      + ++++ G+    
Sbjct: 208 NVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKR--RLELNVYVGSALVDMYGKCDFP 265

Query: 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLN 543
            EA  +    P K   + W A++TA   N   E  L  F   ++ G+ P + + Y V LN
Sbjct: 266 HEANRVFEVLPEKNIVS-WTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFT-YAVALN 323

Query: 544 IYNSSGKLKEAAEV-IRTLRRKGLRMLPACS 573
                  LK    +   T++     +LP C+
Sbjct: 324 SCAGLATLKNGNALGACTMKTGHWGLLPVCN 354



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 1/144 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N+ + +AL+LF  +E E G      TY   +++C GL +++    + +  + TG    L 
Sbjct: 293 NELFEDALQLFLDMEME-GVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLP 351

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N ++ M+ + G + DARR+F  MP R++VS N II G    G   EA   F D+    
Sbjct: 352 VCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAE 411

Query: 227 SDCGSRTFATMIRASAGLELISVG 250
                 TF  ++ A A L L+  G
Sbjct: 412 EVPSYVTFIGVLSACAQLGLVDEG 435


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/609 (35%), Positives = 348/609 (57%), Gaps = 8/609 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           +Q+ +L    ++ +AL L+  +    G    + T+   + +C  L       +    +  
Sbjct: 10  TQLRELAKRCQFLQALSLYPQM-LRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQITK 68

Query: 159 TG--FEPDLYMRNRVLLMHVRCGMMIDARRLFDE-MPERNLVSC-NMIIAGMIDSGDYLE 214
            G  FEP  +++  ++ M+ +  ++ +AR++F+E    R L  C N +++G + +    +
Sbjct: 69  VGCVFEP--FVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSD 126

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
           A LLF  + EE     S T   +I A      + +G  LH   LK GF  +V V    I 
Sbjct: 127 AVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFIT 186

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MY KCGS+  AQ +FDEM  K  + WN +++GYA +G +   L+LY  M  +GV  D  T
Sbjct: 187 MYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVT 246

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
              ++  C  L +     +    +   GF  +   N+AL++ Y++ G +  A+ VFD M 
Sbjct: 247 LVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMP 306

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
            + ++SW A+I GYG HG GE AV+LF++M+ +G+ P+   F+ VLSACS +GL+++G E
Sbjct: 307 ERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLE 366

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
            F+ M R+++++P   HY+CM++LLGR G L EA  LI   P K    +W ALL AC+++
Sbjct: 367 YFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIH 426

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
            N+EL + A E++  +EPE +  YV+L NIY+++   K    +   ++ K L+  P CS+
Sbjct: 427 KNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSY 486

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY 634
           +E+K + H F+ GD++H+Q+ EIYR ++ +   I +    PE+        +   RV   
Sbjct: 487 VELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKDNREESNKDGFTRV-GV 545

Query: 635 HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKD 694
           HSEKLAVAFGL+NT+    + I+++ RIC DCH   K+++ +  R++ VRDA+RFHHF++
Sbjct: 546 HSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRN 605

Query: 695 GMCSCGDYW 703
           G CSC DYW
Sbjct: 606 GSCSCKDYW 614



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 4/218 (1%)

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           WNT +   A      +AL LY +M   G + + FTF   ++ C  L+      Q H  + 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEA 417
           + G   +    + L+  Y K   +++AR VF++     K  + +NAL++GY ++ +  +A
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           V LF QM   G+  N VT L ++ AC      E G  +  S +  +          C I 
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCS-TLKYGFDSDVSVVNCFIT 186

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           +  + G ++ A  L    P K   + W A+++    NG
Sbjct: 187 MYMKCGSVNYAQKLFDEMPVKGLIS-WNAMVSGYAQNG 223


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/602 (36%), Positives = 346/602 (57%), Gaps = 11/602 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N  Y +A+ELF  +  EG  ++ S+T  +++ AC+          V  Y + TG   +  
Sbjct: 63  NGLYDKAVELFVRMWLEGQ-ELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETS 121

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N +L M+  C       ++F  M ++N+VS   +I     +G + +   LF ++  E 
Sbjct: 122 LGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEG 181

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                    + + A AG E +  GK +H  A++ G  + + V+ AL++MY KCG +E+A+
Sbjct: 182 IRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEAR 241

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +FD +++K T+ WNT+I GY+    + EA  L+ EM    ++ +  T + I+     L+
Sbjct: 242 FIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLS 300

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           SLE  ++ HA  VR G+  D    +ALVD Y K G +  AR +FD +  KN+ISW  +IA
Sbjct: 301 SLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIA 360

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GYG HGRG +A+ LFEQM  +G++P+  +F A+L ACS SGL + GW  F +M  +H+I+
Sbjct: 361 GYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIE 420

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P+  HYACM++LL   G L EA+  I   P +   ++W +LL  CR++ N++L +  AE 
Sbjct: 421 PKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEM 480

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK----GLRMLPACSWIEVKKQPH 582
           ++ +EPE    YV+L NIY  +    E  E +R L+ K    GLR    CSWIEV+ + H
Sbjct: 481 VFELEPENTGYYVLLANIYAEA----ERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAH 536

Query: 583 VFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAV 641
           +F + +++H Q   I   +D +   + + G+ P++K  L   D+      L  HS KLAV
Sbjct: 537 IFFAENRNHPQGMRIAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEALCGHSSKLAV 596

Query: 642 AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
           AFG++N S   P+++ ++ R+C  CH A K I+ + GREI++RD++RFHHF++G CSC  
Sbjct: 597 AFGVLNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHHFEEGRCSCRG 656

Query: 702 YW 703
           YW
Sbjct: 657 YW 658



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/446 (28%), Positives = 208/446 (46%), Gaps = 38/446 (8%)

Query: 152 VFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGD 211
           V  Y++  GF     + N ++  + +   + DA  +FDEMP+R+++S N II G   +G 
Sbjct: 6   VHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGL 65

Query: 212 YLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCA 271
           Y +A  LF+ +W E  +  S T  +++ A        +G  +H  +++ G      +  A
Sbjct: 66  YDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNA 125

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
           L+DMYS C        +F  M +K  V W  +I  Y   G+ ++   L+ EM   G++ D
Sbjct: 126 LLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPD 185

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
            F  +  +       SL+H K  H   +R+G    +   +AL++ Y K G +E+AR +FD
Sbjct: 186 VFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFD 245

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
            +  K+ ISWN LI GY       EA  LF +MLL  +RPN VT   +L A +     ER
Sbjct: 246 HVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLER 304

Query: 452 GWEIFQSMSR--------------DHKIKPRAM----------------HYACMIELLGR 481
           G E+     R              D  +K  A+                 +  MI   G 
Sbjct: 305 GREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGM 364

Query: 482 EGLLDEAFAL---IRGAPFKTTKNMWAALLTACRVNGNLELG-KF--AAEKLYGMEPEKL 535
            G   +A AL   ++G+  +     ++A+L AC  +G  + G +F  A    + +EP KL
Sbjct: 365 HGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEP-KL 423

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTL 561
            +Y  ++++   +G LKEA E I T+
Sbjct: 424 KHYACMVDLLCHTGNLKEAYEFIETM 449



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 149/353 (42%), Gaps = 39/353 (11%)

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G  +H   +K GFG    V  ALI  Y+K   IEDA  VFDEM ++  + WN+II G A 
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +G  ++A++L+  M   G ++D  T   ++  C +          H   VR G   +   
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            +AL+D YS          +F  M  KNV+SW A+I  Y   G  ++   LF++M L G+
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182

Query: 430 RPNHVTFLAVLSACS-----RSGLSERGWEIFQSMSR----------------------- 461
           RP+     + L A +     + G S  G+ I   +                         
Sbjct: 183 RPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARF 242

Query: 462 --DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN--MWAALLTACRVNGNL 517
             DH  K   + +  +I    R  L +EAF L      +   N    A +L A     +L
Sbjct: 243 IFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQLRPNAVTMACILPAAASLSSL 302

Query: 518 ELGK----FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           E G+    +A  + Y +E   ++N   L+++Y   G L  A  +   L  K L
Sbjct: 303 ERGREMHAYAVRRGY-LEDNFVAN--ALVDMYVKCGALLLARRLFDMLTNKNL 352


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/598 (36%), Positives = 346/598 (57%), Gaps = 12/598 (2%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA+ELF  +  E GF     T  +++SAC  L S R  +++ S  L  G E D  +   +
Sbjct: 238 EAVELFLDM-LENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGL 296

Query: 172 LLMHVRC---GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDY-LEAFLLFLDLWEEFS 227
           + M+ +      + +AR +F+ MP+ N+++   +++G +  G    +  +LF  +  E  
Sbjct: 297 VDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGI 356

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
                T+++M++A A L     G+Q+H+  +K    D   V  AL+ MY++ GSIE+A+ 
Sbjct: 357 RPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARH 416

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
            FD++ EK  V ++  + G    G S    D   E  + G+    FTF  +I     +  
Sbjct: 417 AFDQLYEKNMVSFSGNLDG---DGRSNTYQDYQIERMELGIST--FTFGSLISAAASVGM 471

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           L   ++ HA  ++ GFG D    ++LV  YS+ G + DA  VFD+M   NVISW ++I+G
Sbjct: 472 LTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISG 531

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
              HG    A+ELF  M+  G++PN VT++AVLSACS +GL + G E F+ M + H + P
Sbjct: 532 LAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIP 591

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
           R  HYACM++LLGR GL+++A   I   P +    +W  LL AC+ + N+++G+ AA  +
Sbjct: 592 RMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHV 651

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
             +EP+  + YV+L N+Y  +G   + A +   +R K L      SW+ V    H F +G
Sbjct: 652 IQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAG 711

Query: 588 DQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLI 646
           D SH Q +EIY K++ ++ EI   GYVP+   +L D+ DE ++  L  HSEK+AVAFGLI
Sbjct: 712 DTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKIAVAFGLI 771

Query: 647 N-TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + TS   P++I ++ R+C DCH+A+K ++  TGREI++RD++RFH  KDG CSCG+YW
Sbjct: 772 SCTSATKPIRIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 109/311 (35%), Positives = 171/311 (54%), Gaps = 10/311 (3%)

Query: 155 YMLSTG--FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE--RNLVSCNMIIAGMIDSG 210
           ++L TG   E D  + N +L ++ +C  +  AR +FD MP   R+LVS   + + +  +G
Sbjct: 72  HLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNG 131

Query: 211 DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV-GKQLHSCALKMGF-GDNVFV 268
              EA  LF +  EE     + T     +A    EL  + G  +     K+GF G +V V
Sbjct: 132 AEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSV 191

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
            CALIDM++K G +   + VFD + E+T V W  +I  YA  GYS+EA++L+ +M ++G 
Sbjct: 192 GCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGF 251

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK---WGRIED 385
           + D +T S ++  CT L S    +Q H+  +R G   D   +  LVD Y+K      + +
Sbjct: 252 QPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHN 311

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVE-LFEQMLLNGMRPNHVTFLAVLSACS 444
           AR VF++M   NV++W AL++GY   G  +  V  LF +ML  G+RPNH+T+ ++L AC+
Sbjct: 312 AREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACA 371

Query: 445 RSGLSERGWEI 455
             G  + G +I
Sbjct: 372 NLGDQDSGRQI 382


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/647 (33%), Positives = 364/647 (56%), Gaps = 34/647 (5%)

Query: 90  MKKPSAGICSQ-IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIRE 148
           + KP   +C++ + +L  ++   + L ++E +  +G   V   ++  L+ A   ++S+ E
Sbjct: 82  IPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQG-LAVDRFSFPPLLKALSRVKSLVE 140

Query: 149 VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
              +       GF+ D +++  ++ M+  CG + +AR +FD+M  R++V+ +++I G   
Sbjct: 141 GLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQ 200

Query: 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
           SG + +A LLF ++     +      +T++ A      +S GK +H   ++     +  +
Sbjct: 201 SGLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHL 260

Query: 269 SCALIDMYSKCGS-------------------------------IEDAQGVFDEMSEKTT 297
             AL+ MY+ CGS                               IE+A+ VF++M +K  
Sbjct: 261 QSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDL 320

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           V W+ +I+GYA     +EAL+L+ EM+  G+K D  T   +I  C  L +L+ AK  H  
Sbjct: 321 VCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLF 380

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           + ++GFG  +  N+AL++ Y+K G +E AR +FDKM  KNVISW  +I+ +  HG    A
Sbjct: 381 VDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSA 440

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           +  F QM    + PN +TF+ VL ACS +GL E G +IF SM  +H I P+ +HY CM++
Sbjct: 441 LRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVD 500

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
           L GR  LL EA  L+   P      +W +L+ ACRV+G +ELG+FAA++L  ++P+    
Sbjct: 501 LFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGA 560

Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI 597
           +V L NIY  + + ++  +V + ++ KG+     CS  E+  + H FL  D+SH    EI
Sbjct: 561 HVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEI 620

Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPD-VDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQI 656
           Y K+  ++ ++   GY P   ++L D  +E+++ V+ +HSEKLA+ +GL+     + ++I
Sbjct: 621 YEKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTGSCIRI 680

Query: 657 VQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +++ R+C DCH  IKL + V  REIVVRD +RFHH+KDG+CSC DYW
Sbjct: 681 IKNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 110/464 (23%), Positives = 229/464 (49%), Gaps = 37/464 (7%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID-ARRLFDE 190
           ++  L SA     S+  +K+V + +L +  +    +  ++++        +D A  +F+ 
Sbjct: 22  SHHTLFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNL 81

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           +P+     CN  +  +  S +  +  L++  +  +       +F  +++A + ++ +  G
Sbjct: 82  IPKPETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEG 141

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
            ++H  A K+GF  + FV   L+ MY+ CG I +A+ +FD+M  +  V W+ +I GY   
Sbjct: 142 LEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQS 201

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD---- 366
           G   +AL L+ EM++  V+ D    S ++  C R  +L + K  H  ++ +   +D    
Sbjct: 202 GLFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQ 261

Query: 367 ---------------------------IVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
                                      +VA++A+V  YSK G+IE+AR VF++M+ K+++
Sbjct: 262 SALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLV 321

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
            W+A+I+GY      +EA+ LF +M   G++P+ VT L+V++AC+  G  ++   I   +
Sbjct: 322 CWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFV 381

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL-- 517
            ++       ++ A +IE+  + G L+ A  +    P K   + W  +++A  ++G+   
Sbjct: 382 DKNGFGGALPINNA-LIEMYAKCGSLERARRIFDKMPRKNVIS-WTCMISAFAMHGDAGS 439

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            L  F   +   +EP  ++ +V +L   + +G ++E  ++  ++
Sbjct: 440 ALRFFHQMEDENIEPNGIT-FVGVLYACSHAGLVEEGRKIFYSM 482


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 206/579 (35%), Positives = 347/579 (59%), Gaps = 9/579 (1%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S+ Y+A++ A  G R ++++++V ++++ T +     +  +++ +      +     LF 
Sbjct: 9   SAAYEAIVRA--GPR-VKQLQQVHAHLIVTSYGRSRSLLTKLITLACSARAIAYTHLLFL 65

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
            +P  +    N +I         L     +  +        + TF ++I++ A L  + +
Sbjct: 66  SVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSALKI 125

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           GK +H  A+  GFG + +V  AL+  YSKCG +E A+ VFD M EK+ V WN++++G+  
Sbjct: 126 GKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEAARQVFDRMPEKSVVAWNSLVSGFEQ 185

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +G +E+A+ ++Y+MR+SG + D  TF  ++  C +  ++      H  +V  G  +++  
Sbjct: 186 NGLAEDAIRVFYQMRESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKL 245

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN-G 428
            +AL++ YS+ G +  AR VFDKM   NV +W A+I+ YG HG G++AV+LF +M  + G
Sbjct: 246 GTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCG 305

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
             PN+VTF+AVLSAC+ +GL E G  +++ M+  +++ P   H+ C++++LGR G LDEA
Sbjct: 306 SIPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVCIVDMLGRAGFLDEA 365

Query: 489 FALIR---GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
           +  I+        T   +W A+L AC+++ N +LG   A++L  +EPE   ++V+L NIY
Sbjct: 366 YRFIQQLDATGNATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPENPGHHVMLSNIY 425

Query: 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
             SGK  E + +   + R  LR     S IEV+ + ++F  GD+SH +T EIYR ++ ++
Sbjct: 426 ALSGKTDEVSHIRDRMMRNNLRKQVGYSIIEVENKTYLFSMGDESHQETGEIYRYLETLI 485

Query: 606 LEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICC 664
               + GY P  + ++  V+E+E+   L YHSEKLAVAFGL+ T D + + +V++ RIC 
Sbjct: 486 SRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD-SAITVVKNLRICE 544

Query: 665 DCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           DCH+A K I++V+ R+I+VRD  RFHHF++G CSC DYW
Sbjct: 545 DCHSAFKYISIVSNRQIIVRDKLRFHHFQNGSCSCLDYW 583



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 62/289 (21%), Positives = 120/289 (41%), Gaps = 56/289 (19%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           E GF+  S+T+ +L+SAC    +I     V  Y++S G + ++ +   ++ ++ RCG + 
Sbjct: 201 ESGFEPDSATFVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVG 260

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS----RTFATMI 238
            AR +FD+M E N+ +   +I+     G   +A  LF  + +   DCGS     TF  ++
Sbjct: 261 KAREVFDKMKETNVAAWTAMISAYGTHGYGKQAVDLFNKMED---DCGSIPNNVTFVAVL 317

Query: 239 RASAGLELISVGKQLH-----SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
            A A   L+  G+ ++     S  L  G   +V     ++DM  + G +++A     ++ 
Sbjct: 318 SACAHAGLVEDGRSVYKRMTESYRLIPGVEHHV----CIVDMLGRAGFLDEAYRFIQQLD 373

Query: 294 EKTTVG----WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
                     W  ++    +H                        + + + I  RL +LE
Sbjct: 374 ATGNATAPALWTAMLGACKMHR----------------------NYDLGVEIAKRLIALE 411

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
                H              +  L + Y+  G+ ++  H+ D+M+  N+
Sbjct: 412 PENPGH--------------HVMLSNIYALSGKTDEVSHIRDRMMRNNL 446


>gi|302800503|ref|XP_002982009.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
 gi|300150451|gb|EFJ17102.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
          Length = 604

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/584 (36%), Positives = 338/584 (57%), Gaps = 11/584 (1%)

Query: 126 FDVGS---STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
            D GS   + Y  L+ AC   R++   +R+ + +++TG +  +++ N +L+M+ +CG M 
Sbjct: 26  LDQGSREVTEYLDLLLACGRSRNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGME 85

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
           D  R F EM  RN+VS N +I+    +    +A ++FL +  +       TF +++ A A
Sbjct: 86  DLSRAFSEMKRRNIVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAFA 145

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
           G EL    K +H  AL++GFG +  V+ AL++MYSK GSI+ A+ VFDE++ K  V W+ 
Sbjct: 146 GPELHRWAKLVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSN 205

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +IA YA  G+  EAL++++ M   G++ +  TF  ++  C  +A +  A+  H  ++  G
Sbjct: 206 MIAAYAQTGHGTEALEMFHRMDAEGIQANVITFVAVVHACVLVARITDARTIHRRIIEAG 265

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
              + V  +AL++ Y K G + +A+ +FDK+  ++V+ W+A++  Y  HG    A++LF 
Sbjct: 266 LESNTVLGTALLNMYGKCGGLPEAKKIFDKLTERDVVVWSAILEAYARHGHPRVALKLFT 325

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
            M   G+RPN VTF+ VL AC   G    G   F S+ RDH+++P A H  CM+++LGR 
Sbjct: 326 LMQQEGVRPNDVTFVGVLEACCHGGFVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGRA 385

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
           G L+EA + I   P K     W+  L +CR  G+LE GK AAEK++   P   + Y+ L 
Sbjct: 386 GKLEEAESFIARMPVKEEAITWSIFLGSCRSYGDLERGKRAAEKVFEFLPHCRAGYLTLA 445

Query: 543 NIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVD 602
           ++Y  +G  +EA  V R +  +  +  P  S I V+ + H F    Q H Q KEIY  +D
Sbjct: 446 SMYTDAGMPEEAEAVARLMESRCPKKEPGSSKIVVRGRVHEFCVRSQWHPQAKEIYSYLD 505

Query: 603 RMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDW--TPLQIVQSH 660
            +     + GYVP+ + LL    E++      HSE+LA+AFG ++      +P+ I+++ 
Sbjct: 506 VLHARALELGYVPDTRPLLLGSVERK-----LHSERLALAFGAMSVPGKRNSPIHIIKNL 560

Query: 661 RICCDCHNAIKLIA-MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           R+C DCH   K ++  + GREI+VRD SRFH FKDG+CSCGDYW
Sbjct: 561 RVCRDCHEFTKFVSRTMEGREIIVRDTSRFHLFKDGVCSCGDYW 604



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 174/374 (46%), Gaps = 13/374 (3%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I     N R  +A+ +F  +  +G       T+ ++++A  G    R  K V    L  G
Sbjct: 106 ISAYAQNDRSSDAIVIFLRMLLDG-IQPSYVTFTSVLNAFAGPELHRWAKLVHDLALEVG 164

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F     +   +L M+ + G +  AR++FDE+  +++VS + +IA    +G   EA  +F 
Sbjct: 165 FGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAAYAQTGHGTEALEMFH 224

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +  E       TF  ++ A   +  I+  + +H   ++ G   N  +  AL++MY KCG
Sbjct: 225 RMDAEGIQANVITFVAVVHACVLVARITDARTIHRRIIEAGLESNTVLGTALLNMYGKCG 284

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            + +A+ +FD+++E+  V W+ I+  YA HG+   AL L+  M+  GV+ +  TF  ++ 
Sbjct: 285 GLPEAKKIFDKLTERDVVVWSAILEAYARHGHPRVALKLFTLMQQEGVRPNDVTFVGVLE 344

Query: 341 ICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NV 398
            C     +   +   A LVR H           ++D   + G++E+A     +M  K   
Sbjct: 345 ACCHGGFVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGRAGKLEEAESFIARMPVKEEA 404

Query: 399 ISWNALIA---GYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWE 454
           I+W+  +     YG+  RG+ A E   + L     P+    +L + S  + +G+ E    
Sbjct: 405 ITWSIFLGSCRSYGDLERGKRAAEKVFEFL-----PHCRAGYLTLASMYTDAGMPEEAEA 459

Query: 455 IFQSM-SRDHKIKP 467
           + + M SR  K +P
Sbjct: 460 VARLMESRCPKKEP 473


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/591 (35%), Positives = 346/591 (58%), Gaps = 31/591 (5%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           R I +V  + + ++  G   D +M   +L    +C  +  A R+F      N+     +I
Sbjct: 60  RHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALI 119

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
            G + SG+YLEA  L+  +  E     +   A++++A      +  G+++HS ALK+GF 
Sbjct: 120 DGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFS 179

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSE----------------------------- 294
            N  V   ++++Y KCG + DA+ VF+EM E                             
Sbjct: 180 SNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVR 239

Query: 295 -KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
            K TV W  +I G+  +  +  AL+ +  M+   V+ + FT   ++  C++L +LE  + 
Sbjct: 240 RKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRW 299

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            H+ + +    L++   +AL++ YS+ G I++A+ VFD+M  ++VI++N +I+G   +G+
Sbjct: 300 VHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGK 359

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
             +A+ELF  M+   +RP +VTF+ VL+ACS  GL + G+EIF SM+RD++++P+  HY 
Sbjct: 360 SRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYG 419

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533
           CM++LLGR G L+EA+ LIR         M   LL+AC+++ NLELG+  A++L      
Sbjct: 420 CMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQA 479

Query: 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQ 593
               YV+L ++Y SSGK KEAA+V   ++  G++  P CS IEV  + H FL GD  H Q
Sbjct: 480 DSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQ 539

Query: 594 TKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWT 652
            + IY K++ +   +   GY PE++ +L D+++ E+   L+ HSE+LA+ +GLI+T   T
Sbjct: 540 KERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCT 599

Query: 653 PLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++++++ R+C DCH+AIKLIA +T R+IVVRD +RFH+F++G CSCGDYW
Sbjct: 600 MIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 183/390 (46%), Gaps = 66/390 (16%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I+  V +  Y EA++L+  +  E      +    +++ AC    ++RE + V S  L  G
Sbjct: 119 IDGFVSSGNYLEAIQLYSRMLHESILP-DNYLMASILKACGSQLALREGREVHSRALKLG 177

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F  +  +R R++ ++ +CG + DARR+F+EMPE ++V+  ++I+   D G   EA  +F 
Sbjct: 178 FSSNRLVRLRIMELYGKCGELGDARRVFEEMPE-DVVASTVMISSYSDQGLVEEAGAVFS 236

Query: 221 DL-------WEEFSDCGSR------------------------TFATMIRASAGLELISV 249
            +       W    D   R                        T   ++ A + L  + +
Sbjct: 237 RVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEI 296

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G+ +HS   K     N+FV  ALI+MYS+CGSI++AQ VFDEM ++  + +NT+I+G ++
Sbjct: 297 GRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSM 356

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +G S +A++L+  M    ++  + TF  ++  C+           H GLV  GF    + 
Sbjct: 357 NGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACS-----------HGGLVDFGFE---IF 402

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
           +S   D+     R+E             +  +  ++   G  GR EEA +L   M    M
Sbjct: 403 HSMARDY-----RVE-----------PQIEHYGCMVDLLGRVGRLEEAYDLIRTM---KM 443

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
            P+H+    +LSAC      E G ++ + +
Sbjct: 444 TPDHIMLGTLLSACKMHKNLELGEQVAKEL 473


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/631 (35%), Positives = 346/631 (54%), Gaps = 34/631 (5%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V+N         FE++E   G +    T    ISAC  L+ +   K+V + M   G + +
Sbjct: 200 VVNMAKEAVCLFFEMVEV--GVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSN 257

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
             + N +L M+++CG M   R +FDE  ++NLV  N I++  +  G   E  ++  ++ +
Sbjct: 258 TLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQ 317

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
           +       T  + I A A L  +SVGK  H+   + G      +S A+IDMY KCG  E 
Sbjct: 318 KGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREA 377

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHG-------------------------------YS 313
           A  VFD MS KT V WN++IAG    G                                 
Sbjct: 378 ACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMF 437

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
           EEA+DL  EM++ G+K D  T   I   C  L +L+ AK  +  + ++   +D+   +AL
Sbjct: 438 EEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTAL 497

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           VD +S+ G   +A  VF+ M  ++V +W A I      G  + A+ELF++ML   ++ + 
Sbjct: 498 VDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADD 557

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
             F+A+L+A S  G  ++G ++F +M + H + P+ +HY CM++LLGR GLL+EAF L++
Sbjct: 558 FVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMK 617

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
             P K    +W + L ACR + N+E   +A EK+  + PEK+  +V+L NIY S+GK  +
Sbjct: 618 SMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWND 677

Query: 554 AAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGY 613
            A V   ++ KG + +   S IEV      F SGD+SH +  +I   +  +   IS+ GY
Sbjct: 678 VARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGY 737

Query: 614 VPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKL 672
           VP+   +L DVDEQE + +LS HSEKLA+A+GLINT    P+++V++ R+C DCH+  KL
Sbjct: 738 VPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRMCSDCHSFAKL 797

Query: 673 IAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++ + GREI VRD +R+H FK+G CSC D+W
Sbjct: 798 VSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 168/355 (47%), Gaps = 46/355 (12%)

Query: 251 KQLHSCALKMG-FGDNVFVSCALIDMYSKCGSIEDAQGVF--DEMSEKTTVGWNTIIAGY 307
           KQLH   LK G F  N  ++ A + M +   S+  A   F  DE ++ +    NT+I GY
Sbjct: 39  KQLHCNMLKKGVFNINKLIA-ACVQMGTH-ESLNYALNAFKEDEGTKCSLYTCNTLIRGY 96

Query: 308 ALHGYSEEALDLYYEMRDS-GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           A  G  +EA+ +Y  M    G+  D+FTF  ++  C+++ +     Q H  +V+ G   D
Sbjct: 97  AASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKD 156

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +   ++L+ FY+  G+++  R VFD+ML +NV+SW +LI GY      +EAV LF +M+ 
Sbjct: 157 LFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVE 216

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR--------------DHKIKPRAMH- 471
            G+ PN VT +  +SAC++    E G ++   M+               D  +K   M+ 
Sbjct: 217 VGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYA 276

Query: 472 ---------------YACMIELLGREGLLDEAFALI-----RGA-PFKTTKNMWAALLTA 510
                          Y  ++    + GL  E   ++     +G  P K T     + + A
Sbjct: 277 VREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVT---MLSTIAA 333

Query: 511 CRVNGNLELGKFAAEKLYGMEPEKLSNYV-VLLNIYNSSGKLKEAAEVIRTLRRK 564
           C   G+L +GK +   ++    E+L N    ++++Y   GK + A +V  ++  K
Sbjct: 334 CAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNK 388


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/607 (36%), Positives = 340/607 (56%), Gaps = 4/607 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S +   V N  Y EA+E    +   GGF    +   +L SA   L  +   K V +Y + 
Sbjct: 336 SMLSCYVQNGLYAEAIEFISEM-LRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIK 394

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
              + D  + N ++ M+++C  +  +  +FD M  ++ +S   II     S  ++EA  +
Sbjct: 395 QRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEI 454

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F +  +E          +++ A +GLE I + KQLH  A++ G  D V V   +ID+Y +
Sbjct: 455 FREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLV-VKNRIIDIYGE 513

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG +  +  +F+ + +K  V W ++I  YA  G   EAL L+ EM+ + V+ D      I
Sbjct: 514 CGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSI 573

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +     L+SL   K+ H  L+R  F ++    S+LVD YS  G +  A  VF+ + CK++
Sbjct: 574 LGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDM 633

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           + W A+I   G HG G++A++LF++ML  G+ P+HV+FLA+L ACS S L   G      
Sbjct: 634 VLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDM 693

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M   ++++P   HYAC+++LLGR G  +EA+  I+  P K    +W +LL ACRV+ N E
Sbjct: 694 MMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHE 753

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           L   AA +L  +EP+   NYV++ N++   GK   A EV   +  +GLR  PACSWIE+ 
Sbjct: 754 LAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIG 813

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH-GYVPEEKTLLPDVDEQEQ-RVLSYHS 636
              H F + D SH   + I  K+  +   + K  GY  + +++L DV E+E+  VL  HS
Sbjct: 814 NNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHS 873

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           E+LA++FGLINT    PL+I ++ R+C DCH   KL++ +  R+IVVRDA+RFHHF  G 
Sbjct: 874 ERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGS 933

Query: 697 CSCGDYW 703
           CSCGD+W
Sbjct: 934 CSCGDFW 940



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 138/533 (25%), Positives = 247/533 (46%), Gaps = 68/533 (12%)

Query: 70  PKPNKIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVG 129
           P P K ++      S PD           + +++L      R+AL L  +     G    
Sbjct: 10  PNPYKKFSTTPPSISPPDP----------TSLKQLCKEGNLRQALRL--LTSQTPGRSPP 57

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGF--EPDLYMRNRVLLMHVRCGMMIDARRL 187
              Y  ++      +++ +  +V ++ ++TG     D ++  ++L M+ +CG + DAR L
Sbjct: 58  QEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLL 117

Query: 188 FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF----LDLWEEFSDCGSRTFATMIRASAG 243
           FD M  R + S N +I   + SG   EA  ++    L      +  G  T A++++AS  
Sbjct: 118 FDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGC-TLASVLKASGV 176

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNT 302
                 G ++H  A+K G   + FV+ ALI MY+KCG ++ A  VF+ M +   V  WN+
Sbjct: 177 EGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNS 236

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I+G   +G   +ALDL+  M+ + + M+ +T   ++++CT LA L   ++ HA L++ G
Sbjct: 237 MISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSG 296

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
             ++I  N+ LV  Y+K GR++ A  VF ++  K+ ISWN++++ Y  +G   EA+E   
Sbjct: 297 SEVNIQCNALLV-MYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFIS 355

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           +ML  G +P+H   +++ SA     +   GW +       + IK R              
Sbjct: 356 EMLRGGFQPDHACIVSLSSA-----VGHLGWLLNGKEVHAYAIKQR-------------- 396

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
             LD               N    +   CR        +++A     M  +   ++  ++
Sbjct: 397 --LDSD---------TQVGNTLMDMYMKCRYI------EYSAHVFDRMRIKDHISWTTII 439

Query: 543 NIYNSSGKLKEAAEVIRTLRRKGLRMLP--------ACSWIE---VKKQPHVF 584
             Y  S +  EA E+ R  +++G+++ P        ACS +E   + KQ H +
Sbjct: 440 TCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCY 492



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 124/489 (25%), Positives = 212/489 (43%), Gaps = 70/489 (14%)

Query: 242 AGLELISVGKQLHSCALKMGF--GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
           A  + ++ G Q+H+ A+  G   GD+ F++  L+ MY KCG + DA+ +FD MS +T   
Sbjct: 69  AAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFS 128

Query: 300 WNTIIAGYALHGYSEEALDLYYEMR---DSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
           WN +I  Y   G + EAL +Y  MR    SGV  D  T + +++            + H 
Sbjct: 129 WNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHG 188

Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-CKNVISWNALIAGYGNHGRGE 415
             V+HG        +AL+  Y+K G ++ A  VF+ M   ++V SWN++I+G   +G   
Sbjct: 189 LAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFL 248

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
           +A++LF  M    +  N  T + VL  C+       G E+  ++ +        +    +
Sbjct: 249 QALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSG--SEVNIQCNAL 306

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL--ELGKFAAEKLY-GMEP 532
           + +  + G +D A  + R    K   + W ++L+ C V   L  E  +F +E L  G +P
Sbjct: 307 LVMYTKCGRVDSALRVFREIDEKDYIS-WNSMLS-CYVQNGLYAEAIEFISEMLRGGFQP 364

Query: 533 E-----KLSNYVV----LLN-----IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           +      LS+ V     LLN      Y    +L    +V  TL    + M   C +IE  
Sbjct: 365 DHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTL----MDMYMKCRYIEY- 419

Query: 579 KQPHVF-----------------LSGDQSHVQTKEIYR-------KVDRMMLEISKHGYV 614
              HVF                  +    H++  EI+R       KVD MM+        
Sbjct: 420 -SAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMI-------- 470

Query: 615 PEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
               ++L      E  +L+      A+  GL++       +I+  +  C + ++++K+  
Sbjct: 471 ---GSILEACSGLETILLAKQLHCYAIRNGLLDLV--VKNRIIDIYGECGEVYHSLKMFE 525

Query: 675 MVTGREIVV 683
            V  ++IV 
Sbjct: 526 TVEQKDIVT 534


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/663 (33%), Positives = 355/663 (53%), Gaps = 70/663 (10%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R+ EA++    +  +G F     T   ++S+C   ++    ++V S+++  G    + + 
Sbjct: 38  RFGEAIKTLLDMTADG-FTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVA 96

Query: 169 NRVLLMHVRCG-------------------------------MMIDARRLFDEMPERNLV 197
           N VL M+ +CG                                M  A  LF+ MP+R++V
Sbjct: 97  NSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIV 156

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQLHSC 256
           S N +IAG   +G   +A  LF  +  E S      T  +++ A A L  + +GKQ+H+ 
Sbjct: 157 SWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAY 216

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE------------------------- 291
            L+     N  V+ ALI  Y+K GS+E+A+ + D+                         
Sbjct: 217 ILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME 276

Query: 292 --------MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
                   M+ +  V W  +I GY  +G ++EA+DL+  M   G + + +T + ++ +C 
Sbjct: 277 SAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCA 336

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KNVISW 401
            LA L++ KQ H   +R         ++A++  Y++ G    AR +FD+ +C  K  I+W
Sbjct: 337 SLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQ-VCWRKETITW 395

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
            ++I     HG+GEEAV LFE+ML  G+ P+ +T++ VLSACS +G    G   +  +  
Sbjct: 396 TSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKN 455

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           +H+I P   HYACM++LL R GL  EA   IR  P +     W +LL+ACRV+ N EL +
Sbjct: 456 EHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAE 515

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
            AAEKL  ++P     Y  + N+Y++ G+  +AA + +  + K +R     SW  ++ + 
Sbjct: 516 LAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKI 575

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLA 640
           HVF + D  H Q   +Y    RM  EI   G+VP+ +++L DVD++ ++ +LS HSEKLA
Sbjct: 576 HVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLA 635

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AFGLI+T + T L+++++ R+C DCH AIK I+ VT REI+VRDA+RFHHF+DG+CSC 
Sbjct: 636 IAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCK 695

Query: 701 DYW 703
           DYW
Sbjct: 696 DYW 698



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 205/447 (45%), Gaps = 69/447 (15%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M  + G + DAR +F EMPER+ VS  +++ G+  +G + EA    LD+  +       T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD--- 290
              ++ + A  +  +VG+++HS  +K+G G  V V+ ++++MY KCG  E A  VF+   
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 291 ----------------------------EMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
                                        M +++ V WN +IAGY  +G   +AL L+  
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 323 M-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
           M  +S +  D FT + ++  C  L ++   KQ HA ++R     +    +AL+  Y+K G
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 240

Query: 382 RIEDARHVFDK---------------------------------MLCKNVISWNALIAGY 408
            +E+AR + D+                                 M  ++V++W A+I GY
Sbjct: 241 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY 300

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
             +GR +EA++LF  M+  G  PN  T  AVLS C+     + G +I     R    +  
Sbjct: 301 EQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSS 360

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEK 526
           ++  A +I +  R G    A  +     ++     W +++ A   +G  E  +G F    
Sbjct: 361 SVSNA-IITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEML 419

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKE 553
             G+EP++++ YV +L+  + +G + E
Sbjct: 420 RAGVEPDRIT-YVGVLSACSHAGFVNE 445



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 150/322 (46%), Gaps = 41/322 (12%)

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           M++K G + DA+GVF EM E+  V W  ++ G    G   EA+    +M   G     FT
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI-VANS---------------------- 371
            + ++  C    +    ++ H+ +V+ G G  + VANS                      
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 372 --------ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
                   A+V   +  GR++ A  +F+ M  ++++SWNA+IAGY  +G   +A++LF +
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 424 MLL-NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           ML  + M P+  T  +VLSAC+  G    G ++   + R        +  A +I    + 
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNA-LISTYAKS 239

Query: 483 GLLDEAFALIRGAPFKTTKNM--WAALLTACRVNGNLELGKFAAEKLYG-MEPEKLSNYV 539
           G ++ A  ++  +  +T  N+  + ALL      G++E    +A +++G M    +  + 
Sbjct: 240 GSVENARRIMDQS-METDLNVISFTALLEGYVKIGDME----SAREMFGVMNNRDVVAWT 294

Query: 540 VLLNIYNSSGKLKEAAEVIRTL 561
            ++  Y  +G+  EA ++ R++
Sbjct: 295 AMIVGYEQNGRNDEAIDLFRSM 316


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/609 (36%), Positives = 353/609 (57%), Gaps = 18/609 (2%)

Query: 101 IEKLVLNKRYREALELFEILEF-EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           I + V  +   EA+E+F  L+F E GF+    T  ++ISAC  L S+R   ++ S  L  
Sbjct: 226 ISRYVQGECAEEAVEIF--LDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRM 283

Query: 160 GFEPDLYMRNRVLLMHVRCGM---MIDARRLFDEMPERNLVSCNMIIAGMIDSG-DYLEA 215
           GF  D  +   ++ M+ +  +   M  A ++F+ M + +++S   +I+G + SG    + 
Sbjct: 284 GFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKV 343

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
            +LF ++  E       T++++++A A +     G+Q+H+  +K        V  AL+ M
Sbjct: 344 MVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSM 403

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           Y++ G +E+A+ VF+++ E++ +  + I  G       +  LD      D G+     TF
Sbjct: 404 YAESGCMEEARRVFNQLYERSMI--SCITEG------RDAPLDHRIGRMDMGISSS--TF 453

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
           + +I     +  L   +Q HA  ++ GFG D   +++LV  YS+ G +EDA   F+++  
Sbjct: 454 ASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKD 513

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           +NVISW ++I+G   HG  E A+ LF  M+L G++PN VT++AVLSACS  GL   G E 
Sbjct: 514 RNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEY 573

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F+SM RDH + PR  HYACM++LL R GL+ EA   I   P K    +W  LL ACR + 
Sbjct: 574 FRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHD 633

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575
           N+E+G+ AA+ +  +EP   + YV+L N+Y  +G   E A +   +R   L      SW+
Sbjct: 634 NIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWM 693

Query: 576 EVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSY 634
           EV+   H F +GD SH + ++IY K+D ++ EI   GYVP+   +L D+ DE +++ L  
Sbjct: 694 EVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMGYVPDTSIVLHDMSDELKEQYLLQ 753

Query: 635 HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKD 694
           HSEK+AVAFGLI TS   P++I ++ R+C DCH+AIK ++  T REI++RD++RFH  KD
Sbjct: 754 HSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKD 813

Query: 695 GMCSCGDYW 703
           G CSCG+YW
Sbjct: 814 GECSCGEYW 822



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 173/336 (51%), Gaps = 10/336 (2%)

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE-RNLVSCNMIIAGMIDSGDYLEAFLLF 219
            + D  + N +L ++ RCG +  AR +FD M   R++VS   + + +  +G   E+ LL 
Sbjct: 80  LDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLI 139

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCAL-KMG-FGDNVFVSCALIDMYS 277
            ++ E      + T   +  A    EL  +   +    + KMG +G ++ V  ALIDM +
Sbjct: 140 GEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLA 199

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           + G +  A+ VFD + EKT V W  +I+ Y     +EEA++++ +  + G + D +T S 
Sbjct: 200 RNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSS 259

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED----ARHVFDKM 393
           +I  CT L S+    Q H+  +R GF  D   +  LVD Y+K   IE     A  VF++M
Sbjct: 260 MISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAK-SNIEQAMDYANKVFERM 318

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVE-LFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
              +VISW ALI+GY   G  E  V  LF +ML   ++PNH+T+ ++L AC+     + G
Sbjct: 319 RKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSG 378

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
            ++   + + ++     +  A ++ +    G ++EA
Sbjct: 379 RQVHAHVIKSNQAAAHTVGNA-LVSMYAESGCMEEA 413


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/606 (34%), Positives = 338/606 (55%), Gaps = 36/606 (5%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S +++++++  +    + E K +F  M     + ++   N ++++  + G +++A +LF+
Sbjct: 207 SVSWNSILAGYVKKGDVEEAKLIFDQMP----QRNIVASNSMIVLLGKMGQVMEAWKLFN 262

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
           EM E+++VS + +I+G   +G Y EA ++F+++             +++ A A L ++  
Sbjct: 263 EMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKT 322

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYS-------------------------------K 278
           GK +H   ++MG    V +  ALI MYS                               K
Sbjct: 323 GKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMK 382

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CGS+E A+ +FD M EK  V W+ +I+GYA H    E L L++EM+   ++ D      +
Sbjct: 383 CGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSV 442

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           I  CT LA+L+  K  HA + ++G  ++++  + L+D Y K G +E+A  VF+ M  K V
Sbjct: 443 ISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEKGV 502

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
            SWNALI G   +G  E ++++F +M  NG+ PN +TF+ VL AC   GL + G   F S
Sbjct: 503 SSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFAS 562

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M   H I+P   HY CM++LLGR GLL+EA  LI   P       W ALL AC+ +G+ E
Sbjct: 563 MIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTE 622

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           +G+    KL  ++P+    +V+L NI+ S G  ++  EV   ++++G+   P CS IE  
Sbjct: 623 MGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEAN 682

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSE 637
              H FL+GD++H    ++   ++ M   +   GY P+   +  D+DE+E+    + HSE
Sbjct: 683 GVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSE 742

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+AFGL+  S  TP++I+++ RIC DCH A KLI+    REIVVRD  RFH+FK+G C
Sbjct: 743 KLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGAC 802

Query: 698 SCGDYW 703
           SC DYW
Sbjct: 803 SCMDYW 808



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 191/393 (48%), Gaps = 47/393 (11%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMM-ID-ARRLFDEMPERNLVSCNM 201
            ++++  R+ S M+ TGF  D +  +R+L        + +D + ++FD +   N    N 
Sbjct: 52  HNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNT 111

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           ++   I S    +A LL+  + +      + T+  +++A A   L   GK++H   LK+G
Sbjct: 112 MMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVG 171

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
           F  +V+V   LI+MY+ CG++ DA+ +FDE     +V WN+I+AGY   G  EEA  ++ 
Sbjct: 172 FDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFD 231

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
           +M                                          +IVA+++++    K G
Sbjct: 232 QMPQR---------------------------------------NIVASNSMIVLLGKMG 252

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
           ++ +A  +F++M  K+++SW+ALI+GY  +G  EEA+ +F +M  NGMR + V  ++VLS
Sbjct: 253 QVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLS 312

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           AC+   + + G ++   +     I+        +I +    G + +A  L  G+     +
Sbjct: 313 ACAHLSIVKTG-KMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGS-HNLDQ 370

Query: 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534
             W ++++ C   G++E     A  L+ + PEK
Sbjct: 371 ISWNSMISGCMKCGSVE----KARALFDVMPEK 399



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/321 (23%), Positives = 149/321 (46%), Gaps = 22/321 (6%)

Query: 261 GFGDNVFVSCALIDMYSKCGSI--EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
           GF  + F +  L+   +    I  + +  +FD +       WNT++  Y     +E+AL 
Sbjct: 68  GFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALL 127

Query: 319 LYYEMRDSGVKMDHFTFSMIIRIC-TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
           LY  M  + V  D++T+ ++++ C  RL      K+ H  +++ GF  D+   + L++ Y
Sbjct: 128 LYKLMVKNNVGPDNYTYPLVVQACAVRLLEFG-GKEIHDHVLKVGFDSDVYVQNTLINMY 186

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           +  G + DAR +FD+    + +SWN+++AGY   G  EEA  +F+QM     + N V   
Sbjct: 187 AVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQM----PQRNIVASN 242

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL---IRG 494
           +++    + G     W++F  M     +      ++ +I    + G+ +EA  +   +  
Sbjct: 243 SMIVLLGKMGQVMEAWKLFNEMDEKDMVS-----WSALISGYEQNGMYEEALVMFIEMNA 297

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYV-VLLNIYNSSGKLKE 553
              +  + +  ++L+AC     ++ GK     +  M  E   N    L+++Y+ SG++ +
Sbjct: 298 NGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMD 357

Query: 554 AAEVIRTLRRKGLRMLPACSW 574
           A ++       G   L   SW
Sbjct: 358 AQKLFN-----GSHNLDQISW 373


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/663 (33%), Positives = 355/663 (53%), Gaps = 70/663 (10%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R+ EA++    +  +G F     T   ++S+C   ++    ++V S+++  G    + + 
Sbjct: 144 RFGEAIKTLLDMTADG-FTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVA 202

Query: 169 NRVLLMHVRCG-------------------------------MMIDARRLFDEMPERNLV 197
           N VL M+ +CG                                M  A  LF+ MP+R++V
Sbjct: 203 NSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIV 262

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQLHSC 256
           S N +IAG   +G   +A  LF  +  E S      T  +++ A A L  + +GKQ+H+ 
Sbjct: 263 SWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAY 322

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE------------------------- 291
            L+     N  V+ ALI  Y+K GS+E+A+ + D+                         
Sbjct: 323 ILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME 382

Query: 292 --------MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
                   M+ +  V W  +I GY  +G ++EA+DL+  M   G + + +T + ++ +C 
Sbjct: 383 SAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCA 442

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KNVISW 401
            LA L++ KQ H   +R         ++A++  Y++ G    AR +FD+ +C  K  I+W
Sbjct: 443 SLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQ-VCWRKETITW 501

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
            ++I     HG+GEEAV LFE+ML  G+ P+ +T++ VLSACS +G    G   +  +  
Sbjct: 502 TSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKN 561

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           +H+I P   HYACM++LL R GL  EA   IR  P +     W +LL+ACRV+ N EL +
Sbjct: 562 EHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAE 621

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
            AAEKL  ++P     Y  + N+Y++ G+  +AA + +  + K +R     SW  ++ + 
Sbjct: 622 LAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKI 681

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLA 640
           HVF + D  H Q   +Y    RM  EI   G+VP+ +++L DVD++ ++ +LS HSEKLA
Sbjct: 682 HVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLA 741

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AFGLI+T + T L+++++ R+C DCH AIK I+ VT REI+VRDA+RFHHF+DG+CSC 
Sbjct: 742 IAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCK 801

Query: 701 DYW 703
           DYW
Sbjct: 802 DYW 804



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 220/479 (45%), Gaps = 71/479 (14%)

Query: 142 GLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNM 201
           G   +R+ +R+F  +       +++  N +L M  + G + DAR +F EMPER+ VS  +
Sbjct: 77  GAGGLRDARRLFDEIPLA--RRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTV 134

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           ++ G+  +G + EA    LD+  +       T   ++ + A  +  +VG+++HS  +K+G
Sbjct: 135 MVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLG 194

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGV-------------------------------FD 290
            G  V V+ ++++MY KCG  E A  V                               F+
Sbjct: 195 LGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFE 254

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLE 349
            M +++ V WN +IAGY  +G   +AL L+  M  +S +  D FT + ++  C  L ++ 
Sbjct: 255 SMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVR 314

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK----------------- 392
             KQ HA ++R     +    +AL+  Y+K G +E+AR + D+                 
Sbjct: 315 IGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEG 374

Query: 393 ----------------MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
                           M  ++V++W A+I GY  +GR +EA++LF  M+  G  PN  T 
Sbjct: 375 YVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTL 434

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
            AVLS C+     + G +I     R    +  ++  A +I +  R G    A  +     
Sbjct: 435 AAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNA-IITMYARSGSFPWARRMFDQVC 493

Query: 497 FKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
           ++     W +++ A   +G  E  +G F      G+EP++++ YV +L+  + +G + E
Sbjct: 494 WRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRIT-YVGVLSACSHAGFVNE 551



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 156/332 (46%), Gaps = 41/332 (12%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           NVF   +L+ M++K G + DA+GVF EM E+  V W  ++ G    G   EA+    +M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI-VANS------------ 371
             G     FT + ++  C    +    ++ H+ +V+ G G  + VANS            
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSE 216

Query: 372 ------------------ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
                             A+V   +  GR++ A  +F+ M  ++++SWNA+IAGY  +G 
Sbjct: 217 TATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGL 276

Query: 414 GEEAVELFEQMLL-NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
             +A++LF +ML  + M P+  T  +VLSAC+  G    G ++   + R        +  
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN 336

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNM--WAALLTACRVNGNLELGKFAAEKLYG- 529
           A +I    + G ++ A  ++  +  +T  N+  + ALL      G++E    +A +++G 
Sbjct: 337 A-LISTYAKSGSVENARRIMDQS-METDLNVISFTALLEGYVKIGDME----SAREMFGV 390

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           M    +  +  ++  Y  +G+  EA ++ R++
Sbjct: 391 MNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM 422



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 78/399 (19%), Positives = 158/399 (39%), Gaps = 94/399 (23%)

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW----GRIEDA 386
           DH+  + ++++C   A+    +  HA  V+ G        + L+ +Y +     G + DA
Sbjct: 27  DHY--ARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDA 84

Query: 387 RHVFDKMLC--KNVISWNAL-------------------------------IAGYGNHGR 413
           R +FD++    +NV +WN+L                               + G    GR
Sbjct: 85  RRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGR 144

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
             EA++    M  +G  P   T   VLS+C+ +     G ++       H    +    +
Sbjct: 145 FGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKV-------HSFVVKLGLGS 197

Query: 474 C------MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF-AAEK 526
           C      ++ + G+ G  + A  +    P ++  + W A+     V+ N  LG+   AE 
Sbjct: 198 CVPVANSVLNMYGKCGDSETATTVFERMPVRSVSS-WNAM-----VSLNTHLGRMDLAES 251

Query: 527 LYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVI-RTLRRKGL--------RMLPACS--- 573
           L+   P++ + ++  ++  YN +G   +A ++  R L    +         +L AC+   
Sbjct: 252 LFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLG 311

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRK--VDRMMLEISKHGYVPEEKTLLPDVDEQEQRV 631
            + + KQ H ++      ++T+  Y     + ++   +K G V   + ++    E +  V
Sbjct: 312 NVRIGKQVHAYI------LRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNV 365

Query: 632 LSYHS-----------EKLAVAFGLINTSD---WTPLQI 656
           +S+ +           E     FG++N  D   WT + +
Sbjct: 366 ISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIV 404


>gi|449510831|ref|XP_004163774.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 556

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/572 (36%), Positives = 324/572 (56%), Gaps = 27/572 (4%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+ A++SAC    +    +++ S +   GF  ++++ + ++ M+ +C  M+ A ++F+EM
Sbjct: 12  TFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEM 71

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P                             L E  +     +F+++  A A    +  GK
Sbjct: 72  PTL---------------------------LLENLTALDEVSFSSVFSACANAGNLEFGK 104

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           Q+H  ALK+G  + V+++ +L DMY KCG   D   +F     +  V WN +I  Y  + 
Sbjct: 105 QVHGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNH 164

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             E+A + ++ MR  G   D  ++S ++  C  LA+L      H  ++R GF  ++   S
Sbjct: 165 NYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVAS 224

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           +L+  Y+K G + DA  +F++   +NV+ W A+IA    HG     VELFEQML  G++P
Sbjct: 225 SLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKP 284

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           +++TF++VLSACS +G  E G+  F SM + H I P   HYAC+++LL R G LD A   
Sbjct: 285 DYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRF 344

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           I   P K   ++W ALL+ACR + NL +GK  A KL+ +EP+   NYV+L NI   +G L
Sbjct: 345 IELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDNPGNYVLLCNILTRNGML 404

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
            EA EV R +   G+R  P CSWI++K   +VF   D+SH +TKEIY  ++++   + K 
Sbjct: 405 NEADEVRRKMESIGVRKEPGCSWIDIKNSTYVFTVHDKSHEKTKEIYEMLEKLKELVKKK 464

Query: 612 GYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           GYV E +  +   +E +++ L YHSEK+A+AFGL++     P++I ++ R C DCH  +K
Sbjct: 465 GYVAETEFAINTAEEYKEQSLWYHSEKIALAFGLLSLPAGAPIRIKKNLRTCGDCHTVMK 524

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             + +  REI+VRD +RFHHF +G+CSCGDYW
Sbjct: 525 FASEIFAREIIVRDINRFHHFTNGICSCGDYW 556



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 60/252 (23%), Positives = 106/252 (42%), Gaps = 36/252 (14%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           MR SGV  +H+TFS ++  CT   +  H +Q H+ + +HGF  ++   SALVD Y+K   
Sbjct: 1   MRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCD 60

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLS 441
           +  A  VF++M                              +LL  +   + V+F +V S
Sbjct: 61  MLMAEKVFEEM----------------------------PTLLLENLTALDEVSFSSVFS 92

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           AC+ +G  E G ++   ++    +         + ++ G+ GL ++   L      +   
Sbjct: 93  ACANAGNLEFGKQV-HGVALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVV 151

Query: 502 NMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA---AE 556
             W  ++ A   N N E     F   +  G  P++ S   VL +  N +   +      +
Sbjct: 152 T-WNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQ 210

Query: 557 VIRTLRRKGLRM 568
           +IR+   K LR+
Sbjct: 211 IIRSGFVKNLRV 222



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 98/209 (46%), Gaps = 5/209 (2%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   V N  Y +A   F ++  +G      ++Y +++ +C  L ++ +   + + ++ +G
Sbjct: 157 IMAYVYNHNYEDACNSFWMMRRKGSIP-DEASYSSVLHSCANLAALYQGTLIHNQIIRSG 215

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F  +L + + ++ M+ +CG ++DA ++F+E  +RN+V    IIA     G       LF 
Sbjct: 216 FVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFE 275

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG--FGDNVFVSCALIDMYSK 278
            +  E       TF +++ A +    +  G    +  +K+   +  +   +C ++D+ S+
Sbjct: 276 QMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYAC-IVDLLSR 334

Query: 279 CGSIEDAQGVFDEMSEKTTVG-WNTIIAG 306
            G ++ A+   + M  K     W  +++ 
Sbjct: 335 AGELDRAKRFIELMPIKPDASVWGALLSA 363


>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g04780-like [Glycine max]
          Length = 632

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/556 (36%), Positives = 325/556 (58%), Gaps = 9/556 (1%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           ++  G E D+     ++ M+ +C ++   R+  DEM  ++L+  N  I  +  + +  +A
Sbjct: 76  IIRIGLEMDILTSTMLINMYSKCSLVHSTRKKXDEMLVKSLILXNTRIGALTQNAEDRKA 135

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
             L + +  E +     T ++++   A    I    QLH+ ++K     N FV  AL+ +
Sbjct: 136 LKLLIRMQREVTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVXTALLHV 195

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           Y+KC SI+DA  +F+ M EK  V W++++AGY  +G+ +EAL L++  +  G   D F  
Sbjct: 196 YAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHDEALLLFHNAQLMGFDQDPFNI 255

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML- 394
           S  +  C  LA+L   KQ HA   + GFG +I   S+L+D Y+K G I +A  VF+  + 
Sbjct: 256 SSAVSACAGLATLVEGKQVHAMSHKSGFGSNIYVASSLIDMYAKCGCIREAYLVFEGFVE 315

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
            ++++ WNA+I+G+  H   +EA+ LFE+M   G  P+ VT+++VL+ACS  GL E G +
Sbjct: 316 VRSIVLWNAMISGFARHALAQEAMILFEKMQQRGFFPDDVTYVSVLNACSHMGLHEEGQK 375

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA-------L 507
            F  M R H + P  +HY+CMI++LGR GL+ +A+ LI    F  T +MW +       +
Sbjct: 376 YFDLMVRQHNLSPSVLHYSCMIDILGRAGLVQKAYDLIGRMSFNATSSMWGSVRGLSXLI 435

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
             +CR+ GN+E  + AA+ L+ MEP    N+++L NIY ++ K  E A   + LR   +R
Sbjct: 436 KASCRIYGNIEFAEIAAKHLFEMEPNNAGNHILLANIYAANKKSDEVARARKLLRETDVR 495

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ 627
                SWIE+K + H F  G+++H Q  + Y K+D +++E+ K  Y  +    L DV+E 
Sbjct: 496 KERGTSWIEIKNKIHSFTVGERNHPQIDDNYAKLDNLVVELKKLNYKVDTNNDLHDVEES 555

Query: 628 EQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
            +  +L +HSEKLA+ FGL+      P++I+++ RIC DCH  +KL++    REI+VRD 
Sbjct: 556 RKHMLLGHHSEKLAITFGLVCLPTEIPIRIIKNLRICGDCHTFMKLVSKFASREIIVRDT 615

Query: 687 SRFHHFKDGMCSCGDY 702
           +RFHHFKDG+CSCG++
Sbjct: 616 NRFHHFKDGLCSCGEF 631



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 168/314 (53%), Gaps = 9/314 (2%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           ++I  L  N   R+AL+L   ++ E        T  +++  C    +I E  ++ ++ + 
Sbjct: 121 TRIGALTQNAEDRKALKLLIRMQREVT-PFNEFTISSVLCNCAFKCAILECMQLHAFSIK 179

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
              + + ++   +L ++ +C  + DA ++F+ MPE+N V+ + ++AG + +G + EA LL
Sbjct: 180 AAIDSNCFVXTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHDEALLL 239

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F +      D      ++ + A AGL  +  GKQ+H+ + K GFG N++V+ +LIDMY+K
Sbjct: 240 FHNAQLMGFDQDPFNISSAVSACAGLATLVEGKQVHAMSHKSGFGSNIYVASSLIDMYAK 299

Query: 279 CGSIEDAQGVFDEMSE-KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           CG I +A  VF+   E ++ V WN +I+G+A H  ++EA+ L+ +M+  G   D  T+  
Sbjct: 300 CGCIREAYLVFEGFVEVRSIVLWNAMISGFARHALAQEAMILFEKMQQRGFFPDDVTYVS 359

Query: 338 IIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
           ++  C+ +   E  ++    +VR H     ++  S ++D   + G ++ A  +  +M   
Sbjct: 360 VLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVQKAYDLIGRM--- 416

Query: 397 NVISWNALIAGYGN 410
              S+NA  + +G+
Sbjct: 417 ---SFNATSSMWGS 427


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/597 (34%), Positives = 346/597 (57%), Gaps = 8/597 (1%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           Y E  ++F  +    G  +  + +   +  C   R +   K++   ++  G+E    +R 
Sbjct: 287 YLEGFQMFHRMRL-AGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT 345

Query: 170 RVLLMHVRCGMMIDARRLFDEM-PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
            +++ + +C  + +A +LF       N+V+   +I G + + +  +A  LF  +  E   
Sbjct: 346 ALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVR 405

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               T++T++         S+  QLH+  +K  +     V+ AL+D Y K G++ ++  V
Sbjct: 406 PNHFTYSTVLAGKPS----SLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARV 461

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR-LAS 347
           F  +  K  V W+ ++ G A    SE+A++++ ++   GVK + +TFS +I  C+   A+
Sbjct: 462 FYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAAT 521

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           +EH KQ HA  V+ G    +  +SAL+  YSK G IE A  VF +   ++++SWN++I G
Sbjct: 522 VEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITG 581

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           YG HG  ++A+E+F+ M   G+  + VTF+ VL+AC+ +GL E G + F  M +D+ I  
Sbjct: 582 YGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDK 641

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
           +  HY+CM++L  R G+ D+A  +I G PF  +  +W  LL ACRV+ NLELGK AAEKL
Sbjct: 642 KXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKL 701

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
             ++P     YV+L NI+  +G  +E A V + +  + ++    CSWIE+K +   FL+G
Sbjct: 702 VSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAG 761

Query: 588 DQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLI 646
           D SH  +  +Y K++ + +++   GY P+   +  DV+E+ ++ +LS HSE+LA+A+GLI
Sbjct: 762 DVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLI 821

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
                 P+QI ++ RIC DCHN I+LI+++  R ++VRD++RFHHFK G+CSCG YW
Sbjct: 822 ALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 124/405 (30%), Positives = 202/405 (49%), Gaps = 8/405 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N   REAL LF+ L    G  V   T    +  C  L      ++V    L +GF  D+ 
Sbjct: 82  NNHDREALHLFKDLH-SSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVS 140

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   ++ M+++     D R +FDEM  +N+VS   +++G   +G   E   L   +  E 
Sbjct: 141 VGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEG 200

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            +    TFAT++ A A   +I  G Q+H+  +K GF    FV  ALI MY K   + DA+
Sbjct: 201 VNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAE 260

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VFD M  + +V WN +I GYA  G+  E   +++ MR +GVK+    F   +++C++  
Sbjct: 261 AVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQR 320

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALI 405
            L   KQ H G+V++G+       +AL+  YSK   +++A  +F       NV++W A+I
Sbjct: 321 ELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMI 380

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
            G+  +   ++AV+LF QM   G+RPNH T+  VL+    S LS+   +I ++     K+
Sbjct: 381 GGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYE--KV 438

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
              A     +++   + G + E+  +    P K     W+A+LT 
Sbjct: 439 PSVA---TALLDAYVKTGNVVESARVFYSIPAKDIV-AWSAMLTG 479



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 162/344 (47%), Gaps = 23/344 (6%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A +LFDE P +++   N ++     +    EA  LF DL          T +  ++    
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L    VG+Q+H  +LK GF ++V V  +L+DMY K    ED +G+FDEM  K  V W ++
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           ++GYA +G ++E + L  +M+  GV  + FTF+ ++      + +E   Q HA +V++GF
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
                  +AL+  Y K   + DA  VFD M+ ++ ++WN +I GY   G   E  ++F +
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 424 MLLNGMRPNHVTFLAVLSACSRS-----------GLSERGWEIFQSMSRDHKIKPRAMHY 472
           M L G++ +   F   L  CS+            G+ + G+E  Q +             
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR------------ 344

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
             ++    +   +DEAF L   A        W A++     N N
Sbjct: 345 TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNN 388


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/600 (34%), Positives = 334/600 (55%), Gaps = 1/600 (0%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           +LN    + + L + +  EG            IS+C     + E ++    +L TGF   
Sbjct: 108 LLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLKTGFSFH 167

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
            Y+RN ++ M+ +C ++ DA  +++E+P  ++V+ N I++ ++++G   E   +   +  
Sbjct: 168 NYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVS 227

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
           E       TF       A L+ + +G  +H   L      + +VS A+I+MY KCG    
Sbjct: 228 ESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLM 287

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+GVFD +  +  V W  ++A    +G  EEAL+L+ +M    VK + FT+++++  C  
Sbjct: 288 ARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAG 347

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           L++  +    H    + GF   ++  +AL++ Y+K G IE A+ VF  M+ +++I+WNA+
Sbjct: 348 LSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAM 407

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I G+ +HG G++A+ +F+ ML     PN+VTF  VLSAC   GL + G+     + +   
Sbjct: 408 ICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFG 467

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           ++P   HY C++ LL + G L+EA   +R AP K     W  LL AC V+ N  LG++ A
Sbjct: 468 VQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVA 527

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
           E +  M+P  +  Y +L NIY    +     +V + +R K ++  P  SWIE+    H+F
Sbjct: 528 EFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVSWIEIGNVTHIF 587

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAF 643
            S D  H    + Y+KV  ++  I   GY P+   +L DV DEQ++  LSYHSEKLA+A+
Sbjct: 588 TSEDNKHPDYGQTYQKVKELLAMIKPLGYTPDIGAVLHDVEDEQKEYYLSYHSEKLAIAY 647

Query: 644 GLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           GL+       + ++++ RIC DCH+A++LI+ VT R IVVRDA+RFHHF+DG CSC DYW
Sbjct: 648 GLLKLPSEASILVIKNLRICDDCHSAVRLISKVTNRVIVVRDANRFHHFRDGRCSCLDYW 707



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 152/317 (47%), Gaps = 18/317 (5%)

Query: 237 MIRASAGLELISVGKQLHS--CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE 294
           +++ SA  + + VGK +HS          +++    +LI+ Y+K   +  A  +FD M E
Sbjct: 35  LLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPE 94

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG-VKMDHFTFSMIIRICTRLASLEHAKQ 353
           +  V W+ ++ GY L+G+S + + L  +M   G V  + +  ++ I  C     +E  +Q
Sbjct: 95  RNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQ 154

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            H  L++ GF       +ALV  YSK   ++DA  V++++   +++++N++++    +G 
Sbjct: 155 CHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGY 214

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACS-----RSGLSERGWEIFQSMSRDHKIKPR 468
             E +E+   M+   ++ + VTF+   S C+     R GL   G  +   +  D  +   
Sbjct: 215 LREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVS-- 272

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEK 526
               + +I + G+ G    A  +  G   +    +W A++ +C  NG  E  L  F+  +
Sbjct: 273 ----SAIINMYGKCGKSLMARGVFDGLQSRNVV-LWTAVMASCFQNGCFEEALNLFSKME 327

Query: 527 LYGMEPEKLSNYVVLLN 543
              ++  + + Y VLLN
Sbjct: 328 QENVKSNEFT-YAVLLN 343


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/594 (35%), Positives = 342/594 (57%), Gaps = 36/594 (6%)

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM---MID-ARRLFDEMPERNLVSCNM 201
           +  +K + +YM+ T    D++  +R++   V       +ID A R+F ++   NL   N 
Sbjct: 30  LTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNA 89

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           +I G   S +  +AF  ++    +     + TF  ++++   L  IS+G Q H   +K G
Sbjct: 90  MIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHG 149

Query: 262 FGDNVFVSCALIDMYS-------------------------------KCGSIEDAQGVFD 290
           F  +V+V  +L+ MY+                               KCG +E A+ +FD
Sbjct: 150 FEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFD 209

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           +M EK  V W+T+I+GYA + + ++A++L+  ++  GV+ +      +I  C  L +LE 
Sbjct: 210 QMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALEL 269

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            ++AH  +V++G  L+++  +ALVD Y++ G I+ A  VF+ +  ++ +SW ALIAG   
Sbjct: 270 GERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAM 329

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           HG  E +++ F  M+  G+ P  +TF AVLSACS  GL ERG++IF+SM RDH+++PR  
Sbjct: 330 HGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLE 389

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HY CM++LLGR G L+EA   +   P K    +W ALL ACR++ N E+G+   + L  +
Sbjct: 390 HYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQL 449

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
            P+    YV+L NIY ++ + ++  E+ + ++ KGL+  P  S IE+  + H F  GD S
Sbjct: 450 LPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSS 509

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTS 649
           H +  +I R  + +++ I   GY       L D+DE+E+   L  HSEKLA+AFG++ + 
Sbjct: 510 HPEMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSE 569

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             TP++IV++ R+C DCH A KLI+ V GRE++VRD +RFHHF+ G+CSC DYW
Sbjct: 570 AGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 180/387 (46%), Gaps = 45/387 (11%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV--------------- 176
           T+  L+ +C  L  I    +   +++  GFE D+Y++N ++ M+                
Sbjct: 121 TFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQRM 180

Query: 177 ----------------RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
                           +CG +  AR+LFD+MPE+NLV+ + +I+G   +  + +A  LF 
Sbjct: 181 YYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFK 240

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            L  +          ++I + A L  + +G++ H   +K G   N+ +  AL+DMY++CG
Sbjct: 241 VLQSQGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCG 300

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           SI+ A  VF+++ E+ T+ W  +IAG A+HGYSE +L  +  M ++G+     TF+ ++ 
Sbjct: 301 SIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLS 360

Query: 341 ICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NV 398
            C+    +E   Q    + R H     +     +VD   + G++E+A     KM  K N 
Sbjct: 361 ACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNA 420

Query: 399 ISWNALIAG---YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS-ERGWE 454
             W AL+     + N   GE   ++  Q+L     P H  +  +LS    +    E+  E
Sbjct: 421 PVWGALLGACRIHKNAEIGERVGKILIQLL-----PQHSGYYVLLSNIYANAKEWEKVTE 475

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGR 481
           + Q M      KP       +IEL GR
Sbjct: 476 MRQMMKAKGLKKPPG---HSLIELDGR 499



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 105/235 (44%), Gaps = 37/235 (15%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I     N  + +A+ELF++L+ +G      +   ++IS+C  L ++   +R   Y++ 
Sbjct: 221 TMISGYAQNNHFDKAVELFKVLQSQG-VRANETVMVSVISSCAHLGALELGERAHDYVVK 279

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G   +L +   ++ M+ RCG +  A  +F+++PER+ +S   +IAG+   G        
Sbjct: 280 NGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHG-------- 331

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA----LKMGFGDNVFVSCA--- 271
                  +S+   + FATM+ A      I+    L +C+    ++ GF   +F S     
Sbjct: 332 -------YSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGF--QIFESMKRDH 382

Query: 272 -----------LIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYSE 314
                      ++D+  + G +E+A+    +M  K     W  ++    +H  +E
Sbjct: 383 RVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAE 437



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 102/232 (43%), Gaps = 21/232 (9%)

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDF----YSKWGRIEDARHVFDKMLCKNVISW 401
           + L H K  HA ++R     D+ A S L+ F     S    I+ A  +F ++   N+  +
Sbjct: 28  SDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIF 87

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR-----SGLSERGWEIF 456
           NA+I G+      ++A   + Q    G+ P+++TF  ++ +C++      G    G  I 
Sbjct: 88  NAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHGHIIK 147

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
               +D  ++   +H   M    G      EA  LI    +      W +++      G+
Sbjct: 148 HGFEKDVYVQNSLVH---MYATFGDT----EAATLIFQRMYYVDVVSWTSMIRGFNKCGD 200

Query: 517 LELGKFAAEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           +E    +A KL+   PEK L  +  +++ Y  +    +A E+ + L+ +G+R
Sbjct: 201 VE----SARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVR 248


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/604 (35%), Positives = 348/604 (57%), Gaps = 8/604 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N   R A  LF  +  +G      +   AL+ AC   R++   +++   + S   E D +
Sbjct: 111 NGHPRGAATLFHWMCSQGVRPNAVTLSTALL-ACTAARNLALGRKLNELIASEALEIDSH 169

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + + ++ M+ RC  + +A R FD  PE+++V    +I+    +     A  L   +  E 
Sbjct: 170 VESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTSRALELVRRMDLEG 229

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG-DNVFVSCALIDMYSKCGSIEDA 285
              G  T+ +++ A A    +  G   H  A  +G    +  V+  L+++Y KCG ++DA
Sbjct: 230 IKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTLVNLYGKCGRVDDA 289

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
           + V D M  +T+V W  +IA YA +G + EA++L+  M   G +    T   ++  C  L
Sbjct: 290 RRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVL 349

Query: 346 ASLEHAKQAHAGL-VRHGFGLDIVANSALVDFYSKWGRIEDARHVFD--KMLCKNVISWN 402
            +L   K+ HA +     F   ++  +A++  Y K G +E AR VF+   +  ++V++W 
Sbjct: 350 GTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWT 409

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           A+I  Y  +G GEEA+ELF++ML++G   PN VTFL+VL ACS  G  E+ WE F SM  
Sbjct: 410 AMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWEHFCSMGP 469

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALI-RGAPFKTTKNMWAALLTACRVNGNLELG 520
           D  + P   HY C+++LLGR G L EA  L+ R   F+     W A L+AC++NG+LE  
Sbjct: 470 DFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERS 529

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
           + AA+++  +EPE ++  V+L N+Y + G+  + A +   ++  G++     SWIE+  +
Sbjct: 530 QRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNR 589

Query: 581 PHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKL 639
            H F+  D SH +  EIY +++R+  EI + GYVP+ K +L DVDE+++ ++L YHSE+L
Sbjct: 590 VHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKVQLLGYHSERL 649

Query: 640 AVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSC 699
           A+A G+I+T   T L++V++ R+C DCH A K I+ + GR+I+VRD SRFHHFKDG+CSC
Sbjct: 650 AMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSC 709

Query: 700 GDYW 703
           GDYW
Sbjct: 710 GDYW 713



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 154/320 (48%), Gaps = 10/320 (3%)

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
           +A+++    GL+ +   ++LH+         N F+   L+D YSK GS+  AQ  F  ++
Sbjct: 38  YASLLWQCRGLDEV---RKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRIT 94

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
                 WN ++A YA +G+   A  L++ M   GV+ +  T S  +  CT   +L   ++
Sbjct: 95  LHNAHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRK 154

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            +  +      +D    S+L+  Y +   IE+A   FD+   K+V+ W A+I+ Y ++ R
Sbjct: 155 LNELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWR 214

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
              A+EL  +M L G++    T++++L AC+ +     G    Q  +     +   +   
Sbjct: 215 TSRALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAG 274

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL--ELGKFAAEKLYGME 531
            ++ L G+ G +D+A  ++   P +T+ + W A++ A   NGN    +  F    L G E
Sbjct: 275 TLVNLYGKCGRVDDARRVLDAMPVRTSVS-WTAMIAAYAQNGNAAEAINLFQCMDLEGAE 333

Query: 532 PEKLSNYVVLLNIYNSSGKL 551
           P  ++    L+++ +S   L
Sbjct: 334 PSDIT----LISVVDSCAVL 349



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 108/236 (45%), Gaps = 16/236 (6%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D    + S    + I     N    EA+ LF+ ++ EG  +    T  +++ +C  L ++
Sbjct: 294 DAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGA-EPSDITLISVVDSCAVLGTL 352

Query: 147 REVKRVFSYMLST-GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP--ERNLVSCNMII 203
              KR+ + + S+  F   L + N V+ M+ +CG +  AR +F+ +P   R++V+   +I
Sbjct: 353 SLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFECVPLRTRSVVTWTAMI 412

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQLHSCALKMGF 262
                +G   EA  LF ++  +     +R TF +++ A + L  +    + H C++   F
Sbjct: 413 RAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQLEQAWE-HFCSMGPDF 471

Query: 263 -----GDNVFVSCALIDMYSKCGSIEDAQGVFDEMS--EKTTVGWNTIIAGYALHG 311
                GD+    C L+D+  + G + +A+ +       E   V W   ++   ++G
Sbjct: 472 GVPPAGDHY---CCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNG 524


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/617 (36%), Positives = 344/617 (55%), Gaps = 61/617 (9%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM----MIDARRLFDEMPERNLVSC 199
           R+IR++ ++ +  + +G   D      +L       +    +  A ++F++MP+RN  S 
Sbjct: 34  RTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSW 93

Query: 200 NMIIAGMIDSGD--YLEAFLLFLDLW-EEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256
           N II G  +S +   L A  LF ++  +EF +    TF ++++A A    I  GKQ+H  
Sbjct: 94  NTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGL 153

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIED-------------------------------- 284
           ALK GFG + FV   L+ MY  CG ++D                                
Sbjct: 154 ALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNV 213

Query: 285 -------------AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
                        A+ +FD+M +++ V WNT+I+GY+L+G+ ++A++++ EM+   ++ +
Sbjct: 214 MIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPN 273

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
           + T   ++   +RL SLE  +  H      G  +D V  SAL+D YSK G IE A HVF+
Sbjct: 274 YVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFE 333

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
           ++  +NVI+W+A+I G+  HG+  +A++ F +M   G+RP+ V ++ +L+ACS  GL E 
Sbjct: 334 RLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEE 393

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
           G   F  M     ++PR  HY CM++LLGR GLLDEA   I   P K    +W ALL AC
Sbjct: 394 GRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGAC 453

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           R+ GN+E+GK  A  L  M P     YV L N+Y S G   E +E+   ++ K +R  P 
Sbjct: 454 RMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPG 513

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH----GYVPEEKTLLPDVDEQ 627
           CS I++    H F+  D SH + KEI    + M++EIS      GY P    +L +++E+
Sbjct: 514 CSLIDIDGVLHEFVVEDDSHPKAKEI----NSMLVEISDKLRLAGYRPITTQVLLNLEEE 569

Query: 628 E-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
           + + VL YHSEK+A AFGLI+TS   P++IV++ RIC DCH++IKLI+ V  R+I VRD 
Sbjct: 570 DKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDR 629

Query: 687 SRFHHFKDGMCSCGDYW 703
            RFHHF+DG CSC DYW
Sbjct: 630 KRFHHFQDGSCSCMDYW 646



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 154/344 (44%), Gaps = 50/344 (14%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID-------- 183
           T+ +++ AC     I+E K++    L  GF  D ++ + ++ M+V CG M D        
Sbjct: 130 TFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKN 189

Query: 184 -------------------------------------ARRLFDEMPERNLVSCNMIIAGM 206
                                                AR LFD+M +R++VS N +I+G 
Sbjct: 190 IIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGY 249

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
             +G + +A  +F ++ +        T  +++ A + L  + +G+ LH  A   G   + 
Sbjct: 250 SLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDD 309

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
            +  ALIDMYSKCG IE A  VF+ +  +  + W+ +I G+A+HG + +A+D + +MR +
Sbjct: 310 VLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQA 369

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIED 385
           GV+     +  ++  C+    +E  ++  + +V   G    I     +VD   + G +++
Sbjct: 370 GVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDE 429

Query: 386 ARHVFDKMLCK-NVISWNALIAG---YGNHGRGEEAVELFEQML 425
           A      M  K + + W AL+      GN   G+    +   M+
Sbjct: 430 AEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMV 473


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/595 (37%), Positives = 334/595 (56%), Gaps = 7/595 (1%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E L LF ++  E   D    T  ++ISAC  L   R  + V  Y++ TGF  ++ + N +
Sbjct: 279 EGLRLFFMMR-EFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSL 337

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + MH   G   +A  +F +M  ++LVS   +I+G   +G   +A   +  +  E      
Sbjct: 338 IQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDE 397

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T A+++ A AGL L+  G  LH  A + G    V V+ +LIDMYSKC  I+ A  VF  
Sbjct: 398 ITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHR 457

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           +  K  + W +II G  L+  S EAL  + +M  S +K +  T   ++  C R+ +L   
Sbjct: 458 IPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCG 516

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-KNVISWNALIAGYGN 410
           K+ HA  +R G G D    +AL+D Y + GR+E A + F+   C K+V SWN L+ GY  
Sbjct: 517 KEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS--CEKDVASWNILLTGYAQ 574

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
            G+G  AVELF +M+ + + P+ +TF ++L ACSRSG+   G E F+SM     I P   
Sbjct: 575 QGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLK 634

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HYA +++LLGR G L++A+  I+  P      +W ALL ACR+  N+ELG+ AA+ ++ M
Sbjct: 635 HYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEM 694

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           + + +  Y++L N+Y  SGK  E A V + +R   L + P CSW+EV  Q H FL+GD  
Sbjct: 695 DTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDF 754

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSD 650
           H Q KEI   ++    ++   G    + +   D+D  +  +   HSE+LA+AFGLINT  
Sbjct: 755 HPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDIDASKAEIFCGHSERLAIAFGLINTVP 814

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD--YW 703
            TP+ + ++  +C +CHN +K I+ V  R I VRD  +FHHFKDG+CSCGD  YW
Sbjct: 815 GTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGDEGYW 869



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 145/512 (28%), Positives = 249/512 (48%), Gaps = 23/512 (4%)

Query: 69  RPKP----NKIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALE-----LFEI 119
           +PKP      I T ++      +  +  PS+        L+L    +  LE     L  +
Sbjct: 26  KPKPLNFSRNIQTRQISLRKHHEISVLNPSSITAQNPNSLILELCLKGDLEKALIHLDSM 85

Query: 120 LEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG 179
            E +    V   TY AL+  C   R+  E  RV SY+  T     + + N +L M VR G
Sbjct: 86  QELQ--VSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFG 143

Query: 180 MMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFA 235
            +++A  +F +M ER+L S N+++ G   +G + EA    L+L+      G R    TF 
Sbjct: 144 DLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEA----LNLYHRMLWVGIRPDVYTFP 199

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
            ++R   GL  ++ G+++H   ++ GF  +V V  ALI MY KCG I  A+ VFD M  +
Sbjct: 200 CVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRR 259

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             + WN +I+GY  +    E L L++ MR+  V  D  T + +I  C  L      ++ H
Sbjct: 260 DRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVH 319

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
             +++ GF  ++  N++L+  +S  G  ++A  VF KM  K+++SW A+I+GY  +G  E
Sbjct: 320 GYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPE 379

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
           +AVE +  M   G+ P+ +T  +VLSAC+  GL ++G  + +   R   +    +    +
Sbjct: 380 KAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRT-GLTSYVIVANSL 438

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN-GNLELGKFAAEKLYGMEPEK 534
           I++  +   +D+A  +    P K   + W +++   R+N  + E   F  + +  ++P  
Sbjct: 439 IDMYSKCRCIDKALEVFHRIPNKNVIS-WTSIILGLRLNYRSFEALFFFQQMILSLKPNS 497

Query: 535 LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           ++  V +L+     G L    E+     R GL
Sbjct: 498 VT-LVSVLSACARIGALSCGKEIHAHALRTGL 528



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 139/487 (28%), Positives = 239/487 (49%), Gaps = 38/487 (7%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + EAL L+  + + G       T+  ++  C GL  +   + V  +++  GFE D+ + N
Sbjct: 176 FDEALNLYHRMLWVG-IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVN 234

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+V+CG +  AR +FD MP R+ +S N +I+G  ++   LE   LF  + E F D 
Sbjct: 235 ALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDP 294

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              T  ++I A   L    +G+++H   +K GF   V V+ +LI M+S  G  ++A+ VF
Sbjct: 295 DLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVF 354

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
            +M  K  V W  +I+GY  +G  E+A++ Y  M   GV  D  T + ++  C  L  L+
Sbjct: 355 SKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLD 414

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
                H    R G    ++  ++L+D YSK   I+ A  VF ++  KNVISW ++I G  
Sbjct: 415 KGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLR 474

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD------- 462
            + R  EA+  F+QM+L+ ++PN VT ++VLSAC+R G    G EI     R        
Sbjct: 475 LNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGF 533

Query: 463 ------------HKIKPRAMHY-ACMIELL------------GREGLLDEAFALIRGAPF 497
                        +++P    + +C  ++             G+ GL  E F  +  +  
Sbjct: 534 LPNALLDMYVRCGRMEPAWNQFNSCEKDVASWNILLTGYAQQGKGGLAVELFHKMIESDV 593

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEA 554
              +  + +LL AC  +G +  G    E +   + + P  L +Y  ++++   +G+L++A
Sbjct: 594 NPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAP-NLKHYASVVDLLGRAGRLEDA 652

Query: 555 AEVIRTL 561
            E I+ +
Sbjct: 653 YEFIKKM 659



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 4/195 (2%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I  L LN R  EAL  F+ +         S T  +++SAC  + ++   K + ++ L 
Sbjct: 468 SIILGLRLNYRSFEALFFFQQMILS--LKPNSVTLVSVLSACARIGALSCGKEIHAHALR 525

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           TG   D ++ N +L M+VRCG M  A   F+   E+++ S N+++ G    G    A  L
Sbjct: 526 TGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVASWNILLTGYAQQGKGGLAVEL 584

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYS 277
           F  + E   +    TF +++ A +   +++ G +   S   K     N+    +++D+  
Sbjct: 585 FHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLG 644

Query: 278 KCGSIEDAQGVFDEM 292
           + G +EDA     +M
Sbjct: 645 RAGRLEDAYEFIKKM 659


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/597 (34%), Positives = 346/597 (57%), Gaps = 8/597 (1%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           Y E  ++F  +    G  +  + +   +  C   R +   K++   ++  G+E    +R 
Sbjct: 287 YLEGFQMFHRMRL-AGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT 345

Query: 170 RVLLMHVRCGMMIDARRLFDEM-PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
            +++ + +C  + +A +LF       N+V+   +I G + + +  +A  LF  +  E   
Sbjct: 346 ALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVR 405

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               T++T++         S+  QLH+  +K  +     V+ AL+D Y K G++ ++  V
Sbjct: 406 PNHFTYSTVLAGKPS----SLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARV 461

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR-LAS 347
           F  +  K  V W+ ++ G A    SE+A++++ ++   GVK + +TFS +I  C+   A+
Sbjct: 462 FYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAAT 521

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           +EH KQ HA  V+ G    +  +SAL+  YSK G IE A  VF +   ++++SWN++I G
Sbjct: 522 VEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITG 581

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           YG HG  ++A+E+F+ M   G+  + VTF+ VL+AC+ +GL E G + F  M +D+ I  
Sbjct: 582 YGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDK 641

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
           +  HY+CM++L  R G+ D+A  +I G PF  +  +W  LL ACRV+ NLELGK AAEKL
Sbjct: 642 KIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKL 701

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
             ++P     YV+L NI+  +G  +E A V + +  + ++    CSWIE+K +   FL+G
Sbjct: 702 VSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAG 761

Query: 588 DQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLI 646
           D SH  +  +Y K++ + +++   GY P+   +  DV+E+ ++ +LS HSE+LA+A+GLI
Sbjct: 762 DVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLI 821

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
                 P+QI ++ RIC DCHN I+LI+++  R ++VRD++RFHHFK G+CSCG YW
Sbjct: 822 ALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 125/405 (30%), Positives = 202/405 (49%), Gaps = 8/405 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N   REAL LF+ L    G  V   T    +  C  L      ++V    L +GF  D+ 
Sbjct: 82  NNHDREALHLFKDLH-SSGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVS 140

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   ++ M+++     D R +FDEM  +N+VS   +++G   +G   E   L   +  E 
Sbjct: 141 VGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEG 200

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            +    TFAT++ A A   +I  G Q+H+  +K GF    FV  ALI MY K   + DA+
Sbjct: 201 VNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAE 260

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VFD M  + +V WN +I GYA  G+  E   +++ MR +GVK+    F   +++C++  
Sbjct: 261 AVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQR 320

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALI 405
            L   KQ H G+V++G+       +AL+  YSK   +++A  +F       NV++W A+I
Sbjct: 321 ELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMI 380

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
            G+  +   E+AV+LF QM   G+RPNH T+  VL+    S LS+   +I ++     K+
Sbjct: 381 GGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYE--KV 438

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
              A     +++   + G + E+  +    P K     W+A+LT 
Sbjct: 439 PSVA---TALLDAYVKTGNVVESARVFYSIPAKDIV-AWSAMLTG 479



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 171/371 (46%), Gaps = 25/371 (6%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A +LFDE P +++   N ++     +    EA  LF DL          T +  ++    
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L    VG+Q+H  +LK GF ++V V  +L+DMY K    ED +G+FDEM  K  V W ++
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           ++GYA +G ++E + L  +M+  GV  + FTF+ ++      + +E   Q HA +V++GF
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
                  +AL+  Y K   + DA  VFD M+ ++ ++WN +I GY   G   E  ++F +
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 424 MLLNGMRPNHVTFLAVLSACSRS-----------GLSERGWEIFQSMSRDHKIKPRAMHY 472
           M L G++ +   F   L  CS+            G+ + G+E  Q +             
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR------------ 344

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGM 530
             ++    +   +DEAF L   A        W A++     N N E  +  F      G+
Sbjct: 345 TALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGV 404

Query: 531 EPEKLSNYVVL 541
            P   +   VL
Sbjct: 405 RPNHFTYSTVL 415


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/629 (33%), Positives = 347/629 (55%), Gaps = 40/629 (6%)

Query: 113  ALELFEILEFEGG-FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
             LE+F+ L  +G  FD  S  Y   +  C  +  I     +   ++  GF+ D+Y+R  +
Sbjct: 507  VLEVFKELHGKGVVFD--SEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCAL 564

Query: 172  LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
            +  + RC  +  A ++F EMP    +  N  I   + S    +   LF  +   F    +
Sbjct: 565  MNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAET 624

Query: 232  RTFATMIRAS-AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             T   +++AS + L  +++GK+ H   L+ GF  +V+V  +LIDMY K  S+  AQ VFD
Sbjct: 625  ATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFD 684

Query: 291  EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII----------- 339
             M  +    WN++++GY+  G  E+AL L  +M   G+K D  T++ +I           
Sbjct: 685  NMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKE 744

Query: 340  ------------------------RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
                                    R C  L+ L+  K+ H   +R+GF  D+   +AL+D
Sbjct: 745  ALAFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALID 804

Query: 376  FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
             YSK   +++A  VF ++  K + SWN +I G+   G G+EA+ +F +M   G+ P+ +T
Sbjct: 805  MYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAIT 864

Query: 436  FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
            F A+LSAC  SGL   GW+ F SM  D++I PR  HY CM++LLGR G LDEA+ LI   
Sbjct: 865  FTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTM 924

Query: 496  PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
            P K    +W ALL +CR++ NL+  + AA+ L+ +EP   +NY++++N+Y+   + ++  
Sbjct: 925  PLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMD 984

Query: 556  EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
             +   +   G+R     SWI++ ++ HVF S ++ H    +IY ++ +++ E+ K GYVP
Sbjct: 985  HLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVP 1044

Query: 616  EEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
            +   +  ++DE E Q++L  H+EKLA+ +GLI      P++++++ RIC DCH+A K I+
Sbjct: 1045 DVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYIS 1104

Query: 675  MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            +V  RE+ +RD  RFHHF++G CSC D+W
Sbjct: 1105 LVKARELFLRDGVRFHHFREGKCSCNDFW 1133


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/577 (36%), Positives = 350/577 (60%), Gaps = 6/577 (1%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S  Y+ L+ A  G R +  + +V ++++ +G+     +  ++L +    G +   R++F 
Sbjct: 12  SPAYNFLLQA--GPR-LYLLHQVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFL 68

Query: 190 EMPERNLVSCNMIIAGMIDSGDY-LEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS 248
            +P  +      +I     S ++ + +   +  +        + TF ++I++ A L  + 
Sbjct: 69  AVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSALK 128

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
            G+ +H   L  GFG +V+V  AL+ +Y KCG + +A+ VFD++ E++ V WN++I+GY 
Sbjct: 129 HGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYE 188

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
            +G+++EA+ L+  M+++GV+ D  TF  ++  C  L +       H  +V +G  L++V
Sbjct: 189 QNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVV 248

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             ++L++ Y + G +  AR VFD M  +NV++W A+I+GYG +G G +AVELF +M  NG
Sbjct: 249 LGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNG 308

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           + PN +TF+AVLSAC+ +GL   G  +F S+  ++ + P   H  C++++LGR GLLDEA
Sbjct: 309 LFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEA 368

Query: 489 FALIR-GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           +  I+   P      +  A+L AC+++ N +LG   AE L   EPE  ++YV+L NIY  
Sbjct: 369 YNFIKEEIPENPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIYAL 428

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
           +G++ +   V   + RK L+     S +EV ++ ++F  GD+SH +T  IY  +D +M +
Sbjct: 429 AGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELMWK 488

Query: 608 ISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
            S+ GYVP   +++ +++E+E+   L YHSEKLA+AFGL+ TS  TP++IV++ R+C DC
Sbjct: 489 CSEAGYVPVSDSVMHELEEEEREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCEDC 548

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           H+AIK I+ ++ REI+VRD  RFHHFK G CSC DYW
Sbjct: 549 HSAIKFISAISSREIIVRDKLRFHHFKVGSCSCLDYW 585



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 99/198 (50%), Gaps = 10/198 (5%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I     N   +EA+ LF+ ++ E G +  S+T+ +++SAC  L +      V  Y++ 
Sbjct: 182 SMISGYEQNGFAKEAIGLFDRMK-ETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVG 240

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G + ++ +   ++ M++RCG +  AR +FD M ERN+V+   +I+G   +G   +A  L
Sbjct: 241 NGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVEL 300

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA-----LKMGFGDNVFVSCALI 273
           F ++        S TF  ++ A A   L++ G++L +       L  G   NV     L+
Sbjct: 301 FHEMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNV----CLV 356

Query: 274 DMYSKCGSIEDAQGVFDE 291
           DM  + G +++A     E
Sbjct: 357 DMLGRAGLLDEAYNFIKE 374


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/573 (34%), Positives = 332/573 (57%), Gaps = 20/573 (3%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL---LMHVRCGMMIDARRLFDEMP 192
           LIS      +++E+K++ +Y + T ++ +  +  + +     +     M  A +LFD++ 
Sbjct: 29  LISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQIT 88

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           + N+V  N +  G     D L        +   F  C        +R  + ++ ++ GKQ
Sbjct: 89  QPNIVLFNTMARGYARLNDPLR-------MITHFRRC--------LRLVSKVKALAEGKQ 133

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LH  A+K+G  DN++V   LI+MY+ CG I+ ++ VFD++ E   V +N II   A +  
Sbjct: 134 LHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNR 193

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
           + EAL L+ E+++ G+K    T  +++  C  L SL+  +  H  + ++GF   +  N+ 
Sbjct: 194 ANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTT 253

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D Y+K G ++DA +VF  M  ++  +W+A+I  Y  HG G +A+ +  +M    ++P+
Sbjct: 254 LIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPD 313

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            +TFL +L ACS +GL E G+E F  M+ ++ I P   HY CM++LLGR G LDEA+  I
Sbjct: 314 EITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFI 373

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
              P K T  +W  LL+AC  +GN+E+GK   E+++ ++     +YV+  N+    GK  
Sbjct: 374 DELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWD 433

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
           +   + +T+  KG   +P CS IEV    H F +G+  H  +  ++R +D ++ E+   G
Sbjct: 434 DVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKELKSAG 493

Query: 613 YVPEEKTLL-PDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           YVP+   +   D+ DE+++ +L YHSEKLA+ FGL+NT   T +++V++ R+C DCHNA 
Sbjct: 494 YVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAA 553

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           K I+++ GR+I++RD  RFHHFKDG CSCGDYW
Sbjct: 554 KFISLIFGRQIILRDVQRFHHFKDGKCSCGDYW 586


>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/621 (33%), Positives = 354/621 (57%), Gaps = 40/621 (6%)

Query: 84  SLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGL 143
           SLPD   +K      + +     N    +A++ F+ +  +G  +    T+ ++++AC  +
Sbjct: 194 SLPD---RKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQG-MESNHFTFPSILTACTSI 249

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
            +    ++V   ++ +GF P++Y+++ ++ M+ +CG +  AR + D M   ++V  N +I
Sbjct: 250 SAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMI 309

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
            G +  G   EA +LF  +          T+ +++++ A  + + +G+ +HS  +K GF 
Sbjct: 310 VGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFD 369

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
               VS AL+DMY+K G++  A  VF+++ +K  + W +++ GY  +G+ E+AL L+ +M
Sbjct: 370 ACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDM 429

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
           R + V +D F  + +   C  L  +E  +Q HA  ++   G  + A ++L+  Y+K G +
Sbjct: 430 RTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCL 489

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           EDA  V D M  +NVISW A+I GY                                   
Sbjct: 490 EDAIRVXDSMETRNVISWTAIIVGY----------------------------------- 514

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           +++GL E G   F+SM + + IKP +  YACMI+LLGR G ++EA  L+     +    +
Sbjct: 515 AQNGLVETGQSYFESMEKVYGIKPASDRYACMIDLLGRAGKINEAEHLLNRMDVEPDATI 574

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           W +LL+ACRV+GNLELG+ A + L  +EP     YV+L N+++ +G+ ++AA + R ++ 
Sbjct: 575 WKSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKT 634

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
            G+   P  SWIE+K Q H F+S D+SH    EIY K+D MM+ I + G+VP+    L D
Sbjct: 635 MGIXQEPGYSWIEMKSQVHTFISEDRSHPLAAEIYSKIDEMMILIKEAGHVPDMNFALRD 694

Query: 624 VDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           +DE+ ++R L+YHSEKLAVAFGL+  +   P++I ++ R+C DCH+A+K I+ +  R I+
Sbjct: 695 MDEEAKERSLAYHSEKLAVAFGLLTVAKGAPIRIFKNLRVCGDCHSAMKYISSIFKRHII 754

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           +RD + FHHF +G CSCGD+W
Sbjct: 755 LRDLNCFHHFIEGKCSCGDFW 775



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 199/377 (52%), Gaps = 19/377 (5%)

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
           + E +++F  M       D Y  N ++  +   G +++AR+LF+E P  N ++ + +++G
Sbjct: 53  VDEARKLFDQMPYR----DKYTWNIMISAYANLGNLVEARKLFNETPIXNSITWSSLVSG 108

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
              +G  +E    F  +W +       T  +++RA + L L+  GK +H  A+K+    N
Sbjct: 109 YCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEAN 168

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSE-KTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           +FV+  L+DMYSKC  + +A+ +F  + + K  V W  ++ GYA +G S +A+  + EMR
Sbjct: 169 IFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMR 228

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           + G++ +HFTF  I+  CT +++    +Q H  ++  GFG ++   SALVD Y+K G + 
Sbjct: 229 NQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLA 288

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            AR + D M   +V+ WN++I G   HG  EEA+ LF +M    +R +  T+ +VL    
Sbjct: 289 SARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVL---- 344

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYAC------MIELLGREGLLDEAFALIRGAPFK 498
           +S  S +  +I +S+   H +  +    AC      ++++  ++G L  A  +      K
Sbjct: 345 KSLASCKNLKIGESV---HSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILDK 401

Query: 499 TTKNMWAALLTACRVNG 515
              + W +L+T    NG
Sbjct: 402 DVIS-WTSLVTGYVHNG 417



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 35/190 (18%)

Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
           G+  +   LD   ++ L+   SK GR+++AR +FD+M  ++  +WN +I+ Y N G   E
Sbjct: 30  GIAHYSSNLD---SNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVE 86

Query: 417 AVELFE-------------------------------QMLLNGMRPNHVTFLAVLSACSR 445
           A +LF                                QM  +G +P+  T  +VL ACS 
Sbjct: 87  ARKLFNETPIXNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACST 146

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
             L   G ++    +   +++        ++++  +   L EA  L    P +     W 
Sbjct: 147 LSLLHTG-KMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWT 205

Query: 506 ALLTACRVNG 515
           A+LT    NG
Sbjct: 206 AMLTGYAQNG 215


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/627 (35%), Positives = 350/627 (55%), Gaps = 35/627 (5%)

Query: 110 YREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           Y+EA+ LF E++E   G    S T   +ISAC  L+ ++  ++V + +     E +  M 
Sbjct: 221 YKEAVSLFFEMVEV--GIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMV 278

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N ++ M+++CG +  AR++FDE  ++NLV  N I++  +  G   E   +  ++ +    
Sbjct: 279 NALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPR 338

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               T  + + A + L+ +S GK  H   L+ G      V  A+I+MY KCG  E A  V
Sbjct: 339 PDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRV 398

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSE-------------------------------EAL 317
           FD M  KT V WN++IAG+  +G  E                               EA+
Sbjct: 399 FDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAI 458

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
           +L+  M+  G+  D  T   +   C  L +L+ AK  H  + +     D+   +ALVD +
Sbjct: 459 ELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMF 518

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           ++ G  + A  VF+KM+ ++V +W A I      G G  A+ELF++ML  G++P+ V F+
Sbjct: 519 ARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFV 578

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
           A+L+A S  GL E+GW IF+SM   + I P+A+HY CM++LLGR GLL EA +LI     
Sbjct: 579 ALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQM 638

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
           +    +W +LL ACRV+ N+++  +AAE++  ++PE+   +V+L NIY S+G+  + A+V
Sbjct: 639 EPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKV 698

Query: 558 IRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEE 617
              L+ KG   +P  S IE+  +   F +GD+SH +   I   +  +   +   GYVP+ 
Sbjct: 699 RLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDL 758

Query: 618 KTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMV 676
             +L DV+E+E+  +LS HSEKLA+AF LI+T    P+++ ++ RIC DCH+  KL++  
Sbjct: 759 TNVLLDVNEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLVSKS 818

Query: 677 TGREIVVRDASRFHHFKDGMCSCGDYW 703
             REI+VRD +RFH F+ G CSCGDYW
Sbjct: 819 YSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 137/472 (29%), Positives = 225/472 (47%), Gaps = 52/472 (11%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  ++SAC    ++ E  +V   ++  GFE D+++ N ++  +  CG +   RR+FD+M
Sbjct: 141 TFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKM 200

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            ERN+VS   +I G    G Y EA  LF ++ E      S T   +I A A L+ + +G+
Sbjct: 201 SERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGE 260

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           Q+ +C  ++    N  +  AL+DMY KCG+I+ A+ +FDE  +K  V +NTI++ Y   G
Sbjct: 261 QVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQG 320

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF-GLDIVAN 370
            + E L +  EM   G + D  T    +  C+ L  +   K  H  ++R+G  G D V N
Sbjct: 321 LAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCN 380

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE--------------- 415
            A+++ Y K G+ E A  VFD+ML K  +SWN+LIAG+  +G  E               
Sbjct: 381 -AIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLV 439

Query: 416 ----------------EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
                           EA+ELF  M   G+  + VT + V SAC   G  +    I    
Sbjct: 440 SWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHG-- 497

Query: 460 SRDHKIKPRAMHY-----ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
                IK + +H+       ++++  R G    A  +      K   + W A + A  + 
Sbjct: 498 ----YIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKM-VKRDVSAWTAAIGAMAME 552

Query: 515 GN----LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           GN    +EL  F      G++P+ +  +V LL   +  G +++   + R+++
Sbjct: 553 GNGTGAIEL--FDEMLQQGIKPDGVV-FVALLTALSHGGLVEQGWHIFRSMK 601



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 133/246 (54%), Gaps = 9/246 (3%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCG---SIEDAQGVFDEMSEK-----TTVGWNT 302
           KQLHS   K G   +      LI   ++ G   S+E AQ   +   E      T   +++
Sbjct: 50  KQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSS 109

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I G++  G   +A+ ++ ++   G   D+FTF  ++  CT+ A+L    Q H  +V+ G
Sbjct: 110 LIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMG 169

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
           F  D+   ++L+ FY + G I+  R VFDKM  +NV+SW +LI GY   G  +EAV LF 
Sbjct: 170 FERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFF 229

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           +M+  G+RPN VT + V+SAC++    + G ++   +  + +++  A+    ++++  + 
Sbjct: 230 EMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIG-ELELEVNALMVNALVDMYMKC 288

Query: 483 GLLDEA 488
           G +D+A
Sbjct: 289 GAIDKA 294



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/232 (22%), Positives = 107/232 (46%), Gaps = 11/232 (4%)

Query: 83  SSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIG 142
           S++PD+ +   +    + I  LV    ++EA+ELF +++ E G      T   + SAC  
Sbjct: 431 SAMPDSDLVSWN----TMIGALVQESMFKEAIELFRVMQSE-GITADKVTMVGVASACGY 485

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           L ++   K +  Y+       D+++   ++ M  RCG    A ++F++M +R++ +    
Sbjct: 486 LGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAA 545

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           I  M   G+   A  LF ++ ++        F  ++ A +   L+  G  +   ++K  +
Sbjct: 546 IGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFR-SMKDIY 604

Query: 263 G---DNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALH 310
           G     V   C ++D+  + G + +A  + + M  E   V W +++A   +H
Sbjct: 605 GIAPQAVHYGC-MVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVH 655


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/601 (34%), Positives = 343/601 (57%), Gaps = 47/601 (7%)

Query: 150  KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
            K +  ++L  G + D  + N +L  +V+C     A +LF  M E++ VS N++++  +  
Sbjct: 408  KGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQI 467

Query: 210  GDYLEAFLLFLDL-------WEEFSDCGSR------------------------TFATMI 238
            GD  ++  LF  L       W    D   R                        TF+  +
Sbjct: 468  GDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIAL 527

Query: 239  RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT- 297
              ++ L ++ +GKQ+H+  LK+G  D+ FV  +LIDMY KCG +E A  +F  + ++++ 
Sbjct: 528  VLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSM 587

Query: 298  --------------VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
                          V W+++++GY  +G  E+AL  +  M  S V++D FT + ++  C 
Sbjct: 588  MNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACA 647

Query: 344  RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
                LE  +Q H  + + G GLD+   S+++D Y K G + DA  +F++   +NV+ W +
Sbjct: 648  SAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIFNQAKDRNVVLWTS 707

Query: 404  LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
            +I+G   HG+G EAV LFE M+  G+ PN V+F+ VL+ACS +GL E G + F+ M   +
Sbjct: 708  MISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAGLLEEGCKYFRLMREVY 767

Query: 464  KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
             I+P A H+ CM++L GR G L+E    I         ++W + L++CRV+ N+E+G + 
Sbjct: 768  GIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRSFLSSCRVHKNIEMGIWV 827

Query: 524  AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
             +KL  +EP     Y++  +I  +  + +EAA++   ++++G++  P+ SWI++K Q H 
Sbjct: 828  CKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGVKKNPSQSWIQLKNQVHS 887

Query: 584  FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVA 642
            F+ GD+SH Q  +IY  +D ++  + + GY  +   ++ DV+ EQ Q +L YHSEKLA+A
Sbjct: 888  FVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQEQRQVLLGYHSEKLAIA 947

Query: 643  FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
            +G+I+T+  TP++++++ R+C DCHN IK  + + GREI++RD  RFHHFK G CSC DY
Sbjct: 948  YGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRDIHRFHHFKHGHCSCADY 1007

Query: 703  W 703
            W
Sbjct: 1008 W 1008



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 90/154 (58%), Gaps = 1/154 (0%)

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
           L+++Y+K  ++E A  +F+E+ +     W  +I+G+A  G S + L L+ +M+D GV  +
Sbjct: 327 LLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPN 386

Query: 332 HFTFSMIIRIC-TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
            FT S++++ C + +      K  H  ++R+G  LD V N++++D+Y K      A  +F
Sbjct: 387 QFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLF 446

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
             M  K+ +SWN +++ Y   G  +++V+LF Q+
Sbjct: 447 GLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQL 480



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 93/227 (40%), Gaps = 56/227 (24%)

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414
           HA L+++G  + I  N  L++ Y+K   +E A  +F+++   +V SW  LI+G+   G  
Sbjct: 311 HAKLIKNGC-VGIRGNH-LLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLS 368

Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSAC------SRSGLSERGWEIFQSMSRDHKIKPR 468
            + + LF +M   G+ PN  T   VL +C      SR G    GW +   +  D  +   
Sbjct: 369 ADVLGLFTKMQDQGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNS 428

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
            + Y                                      CR  G        AEKL+
Sbjct: 429 ILDY-----------------------------------YVKCRCFG-------YAEKLF 446

Query: 529 GMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
           G+  EK + ++ ++++ Y   G ++++ ++ R L  K      A SW
Sbjct: 447 GLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGK-----DAASW 488


>gi|302795736|ref|XP_002979631.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
 gi|300152879|gb|EFJ19520.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
          Length = 879

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/608 (37%), Positives = 352/608 (57%), Gaps = 4/608 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I +    +R+ EALELF+++  EG   +      A+++AC G R + E + +  +M  
Sbjct: 273 AMITQYTQRERWDEALELFKVMLLEG-VKLDRIACMAVLNACSGPRGLEEGRMIHGFMRE 331

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
             F+  +   N ++ M+ +CG + +A  +F  M  R+++S N IIA       + EA  L
Sbjct: 332 IRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHL 391

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
              +  +       +F   +   A  E ++ G+ +HS  ++ G   +V +  A++DMY  
Sbjct: 392 LHLMQLDGVKADKISFVNALPLCAASEALAKGRMIHSWIVESGIKADVMLDNAILDMYGS 451

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG-YSEEALDLYYEMRDSGVKMDHFTFSM 337
           C S +DA  VF  M  +  V WN +I  YA     S EAL L+ +M+  G   D  +F  
Sbjct: 452 CKSTDDASRVFRAMKARDQVSWNAMITAYAAQPRLSSEALLLFQQMQLHGFMPDVISFVA 511

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
            +  C   ASL   K  H  +   G   ++   +A+++ Y+K G +  AR +F KM   +
Sbjct: 512 ALSACAAQASLAEGKLLHDRIRETGLESNMTVANAVLNMYAKSGSLVLARKMFGKMPLPD 571

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           VISWN +I+ +  HG  ++ +  F +M   G  PN VTF++V+SACS  GL + G ++F 
Sbjct: 572 VISWNGMISAFAQHGHADQVLRFFRRMNHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFV 631

Query: 458 SMSRDH-KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
           S+  D   I PRA HY CM++L+ R G LD A   I  AP K  + + + +L A +V+ +
Sbjct: 632 SLLHDFPTISPRAEHYYCMVDLIARAGKLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKD 691

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
           +E  + +AE L  + P++ + YVVL N+Y+  GK  E A++ R +  K +R  PA S I 
Sbjct: 692 VERARKSAEHLMELTPDRSAAYVVLSNLYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIA 751

Query: 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYH 635
           VK++ H F +GD ++ +T EI  +++R+ LE++K GY P+   +L DV DEQ++R+LSYH
Sbjct: 752 VKRRVHEFFTGDTTNARTPEILEELERLSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYH 811

Query: 636 SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
           SEKLA+AFGLI+T+  T L+I+++ R+C DCH A K I+ +TGREIVVRD+ RFHHF +G
Sbjct: 812 SEKLAIAFGLISTAPGTSLRIIKNLRVCGDCHTATKFISKITGREIVVRDSHRFHHFDNG 871

Query: 696 MCSCGDYW 703
            CSCGDYW
Sbjct: 872 TCSCGDYW 879



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 190/386 (49%), Gaps = 16/386 (4%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y  L+      RS+   K V + +  +  +   +M + ++ M+V CG +IDA+  FD MP
Sbjct: 1   YADLLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMP 60

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA-SAGLELISVGK 251
            ++ ++   +I      GD  +A  LF  +  E     +R F  ++ A SA  EL+  G+
Sbjct: 61  VQDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGR 120

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           ++H          + +VS  L+ MY KC S+EDA+ VFD +  K  V WN +I  YA   
Sbjct: 121 RIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQD 180

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-------HGFG 364
           + E+A+ ++Y M   GVK +  TF  ++  C++L  LE AK     LV+       H   
Sbjct: 181 HHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAK-----LVKLCVEEREHDHL 235

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D    +ALV+FY   G +E A   F +   + +++  A+I  Y    R +EA+ELF+ M
Sbjct: 236 HDSSFATALVNFYGSCGDLEQAFRAFSRHRLELILA-TAMITQYTQRERWDEALELFKVM 294

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
           LL G++ + +  +AVL+ACS     E G  I   M R+ +          +I + G+ G 
Sbjct: 295 LLEGVKLDRIACMAVLNACSGPRGLEEGRMIHGFM-REIRFDRHVNAGNALINMYGKCGS 353

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTA 510
           L+EA  + R    +   + W  ++ A
Sbjct: 354 LEEAVEVFRSMQHRDVIS-WNTIIAA 378



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 212/462 (45%), Gaps = 13/462 (2%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIG-LRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +AL LF  ++ EG   V +  + A++ AC      + E +R+   +  T  E D Y+   
Sbjct: 82  QALHLFRSMQLEGVAPV-NRNFVAVLGACSADPELLEEGRRIHGVLRGTAMESDHYVSTT 140

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           +L M+ +C  + DAR++FD +  + +V  N +I        + +A  +F  +  E     
Sbjct: 141 LLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAE 200

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKM---GFGDNVFVSCALIDMYSKCGSIEDAQG 287
             TF  ++ A + L+ + V K +  C  +       D+ F + AL++ Y  CG +E A  
Sbjct: 201 RITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFAT-ALVNFYGSCGDLEQAFR 259

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
            F     +  +    +I  Y      +EAL+L+  M   GVK+D      ++  C+    
Sbjct: 260 AFSRHRLELILA-TAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRG 318

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           LE  +  H  +    F   + A +AL++ Y K G +E+A  VF  M  ++VISWN +IA 
Sbjct: 319 LEEGRMIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAA 378

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           +G H +  EA+ L   M L+G++ + ++F+  L  C+ S    +G  +  S   +  IK 
Sbjct: 379 HGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCAASEALAKG-RMIHSWIVESGIKA 437

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE---LGKFAA 524
             M    ++++ G     D+A  + R    +   + W A++TA      L    L  F  
Sbjct: 438 DVMLDNAILDMYGSCKSTDDASRVFRAMKARDQVS-WNAMITAYAAQPRLSSEALLLFQQ 496

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
            +L+G  P+ +S +V  L+   +   L E   +   +R  GL
Sbjct: 497 MQLHGFMPDVIS-FVAALSACAAQASLAEGKLLHDRIRETGL 537


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/550 (38%), Positives = 325/550 (59%), Gaps = 8/550 (1%)

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F  D Y  + +L M+  C   +DARR FDE+P  N V    + +G + +        +F 
Sbjct: 120 FPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCMRNNLVYTTLSIFR 179

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVG--KQLHSCALKMGFGDNVFVSCALIDMYSK 278
            +    S       A ++  SA   +   G    +H+   K+G      V+  +ID Y+K
Sbjct: 180 SMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDGQTGVANTIIDAYAK 239

Query: 279 CGS--IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG--VKMDHFT 334
            G   +  A+ +FD M ++  V WNT+IA YA +G S EAL LY +M   G  V+ +  T
Sbjct: 240 GGGHDLGAARKLFD-MMDRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVT 298

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
            S ++  C    +++  K+ H  +VR G   ++   +++VD YSK G++E A   F K+ 
Sbjct: 299 LSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIK 358

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
            KN++SW+A+IAGYG HG G+EA+ +F  M  +G++PN++TF+ VL+ACS +GL   G  
Sbjct: 359 GKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRY 418

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
            + +M  +  I+P   HY CM++LLGR G LDEA+ LI+    K    +W ALL+ACR+ 
Sbjct: 419 WYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSACRIY 478

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
            N+EL K  AE+L+ ++      YV+L NIY  +G  KE   +   ++ +G+   P  S 
Sbjct: 479 KNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERMRVLVKTRGIEKPPGYSS 538

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLS 633
           +E+K + H+F  GD+SH Q KEIY  +++++  I   GYVP   ++L D+D E+ + +L 
Sbjct: 539 VELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNTGSVLHDLDVEERESMLR 598

Query: 634 YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
            HSEKLAVAF L+N+   + + ++++ R+C DCH AIK+I  +TGREI++RD  RFHHFK
Sbjct: 599 IHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKLTGREIIIRDLKRFHHFK 658

Query: 694 DGMCSCGDYW 703
           DG+CSCGDYW
Sbjct: 659 DGLCSCGDYW 668



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 97/359 (27%), Positives = 161/359 (44%), Gaps = 47/359 (13%)

Query: 250 GKQLHSCALKMG-FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           G+QLH  AL+ G F  + + + AL+ MY  C    DA+  FDE+     V    + +G  
Sbjct: 107 GRQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCM 166

Query: 309 LHGYSEEALDLYYEMRDSGVK--MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF-GL 365
            +      L ++  M  SG    +D     + +    R+         HA + + G  G 
Sbjct: 167 RNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDGQ 226

Query: 366 DIVANSALVDFYSKWG--RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             VAN+ ++D Y+K G   +  AR +FD M+ ++V+SWN +IA Y  +G   EA+ L+ +
Sbjct: 227 TGVANT-IIDAYAKGGGHDLGAARKLFD-MMDRDVVSWNTMIALYAQNGLSTEALGLYSK 284

Query: 424 MLLNG--MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD------------------- 462
           ML+ G  +R N VT  AVL AC+ +G  + G  I   + R                    
Sbjct: 285 MLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKC 344

Query: 463 ----------HKIKPR-AMHYACMIELLGREGLLDEA---FALIRGAPFKTTKNMWAALL 508
                      KIK +  + ++ MI   G  G   EA   F  +R +  K     +  +L
Sbjct: 345 GKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVL 404

Query: 509 TACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
            AC   G L  G++    +   +G+EP  + +Y  ++++   +G L EA  +I+ ++ K
Sbjct: 405 AACSHAGLLSEGRYWYNTMKTEFGIEP-GVEHYGCMVDLLGRAGCLDEAYGLIKEMKVK 462



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 102/204 (50%), Gaps = 7/204 (3%)

Query: 107 NKRYREALELFEILEFEGGFDV--GSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           N    EAL L+  +   GG DV   + T  A++ AC    +I+  KR+ + ++  G E +
Sbjct: 272 NGLSTEALGLYSKMLIVGG-DVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDN 330

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           +Y+   V+ M+ +CG +  A + F ++  +N++S + +IAG    G   EA  +F D+ +
Sbjct: 331 VYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRK 390

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS--CALIDMYSKCGSI 282
                   TF T++ A +   L+S G+  ++  +K  FG    V     ++D+  + G +
Sbjct: 391 SGLKPNYITFITVLAACSHAGLLSEGRYWYN-TMKTEFGIEPGVEHYGCMVDLLGRAGCL 449

Query: 283 EDAQGVFDEMSEKTTVG-WNTIIA 305
           ++A G+  EM  K     W  +++
Sbjct: 450 DEAYGLIKEMKVKPDAALWGALLS 473


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/610 (35%), Positives = 351/610 (57%), Gaps = 9/610 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N    + L +F  + F G  ++  +T  ++ + C   R I   + V  + + 
Sbjct: 266 SIINGYVSNGLAEKGLSVFVQMLFSG-IEIDLATIVSVFAGCADSRLISLGRAVHCFGVK 324

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
             F  +    N +L M+ +CG +  A+ +F EM  R++VS   +IAG    G   EA  L
Sbjct: 325 ACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKL 384

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F ++ EE       T   ++   A   L+  GK++H    +   G ++FVS AL+DMY+K
Sbjct: 385 FEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAK 444

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY-YEMRDSGVKMDHFTFSM 337
           CGS+ +A+ VF EM  K  + WNT+I GY+ + Y+ EAL L+   + +     D  T + 
Sbjct: 445 CGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVAC 504

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           ++  C  L++ +  ++ H  ++R+G+  D    ++LVD Y+K G +  AR +FD +  K+
Sbjct: 505 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKD 564

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           ++SW  +IAGYG HG G+EA+ LF QM   G+ P+ ++F+++L ACS SGL + GW  F 
Sbjct: 565 LVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFN 624

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
            M  + KI+P   HYAC++++L R G L +A+  I   P      +W ALL  CR++ ++
Sbjct: 625 IMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDV 684

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
           +L +  AEK++ +EPE    YV++ NIY  + K +E   + + + ++GLR  P CSWIE+
Sbjct: 685 KLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEI 744

Query: 578 KKQPHVFLSGDQSHVQTKEI---YRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLS 633
           K + ++F++GD S+ +T++I    R V   M+E    GY P  K  L D +E E +  L 
Sbjct: 745 KGRVNIFVAGDSSNPETEKIEAFLRGVRARMIE---EGYSPLTKYALIDAEEMEKEEALC 801

Query: 634 YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
            HSEKLA+A G+I++     +++ ++ R+C DCH   K ++ +T REIV+RD++RFH FK
Sbjct: 802 GHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFK 861

Query: 694 DGMCSCGDYW 703
           DG CSC  +W
Sbjct: 862 DGHCSCRGFW 871



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 140/499 (28%), Positives = 254/499 (50%), Gaps = 16/499 (3%)

Query: 75  IYTE--ELKESSLPDTQMKKPSAGICSQI-EKLVLNKRYREALELFEILEFEGGFDVGSS 131
           +YT   +LKE+S    Q+K   A   + +  +L  +  +  ++ LF+ +    G ++ S 
Sbjct: 138 MYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKKM-MSSGVEMDSY 196

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  +  +   LRS+   +++  Y+L +GF     + N ++  +++   +  AR++FDEM
Sbjct: 197 TFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEM 256

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            ER+++S N II G + +G   +   +F+ +     +    T  ++    A   LIS+G+
Sbjct: 257 TERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGR 316

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            +H   +K  F         L+DMYSKCG ++ A+ VF EMS ++ V + ++IAGYA  G
Sbjct: 317 AVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREG 376

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
            + EA+ L+ EM + G+  D +T + ++  C R   L+  K+ H  +  +  G DI  ++
Sbjct: 377 LAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSN 436

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MR 430
           AL+D Y+K G + +A  VF +M  K++ISWN +I GY  +    EA+ LF  +L+     
Sbjct: 437 ALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFS 496

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA-CMIELLGREGLLDEAF 489
           P+  T   VL AC+     ++G EI   + R+     R  H A  ++++  + G L  A 
Sbjct: 497 PDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVDMYAKCGALLLAR 554

Query: 490 ALIRGAPFKTTKNM--WAALLTACRVN--GNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
            L       T+K++  W  ++    ++  G   +  F   +  G+EP+++S +V LL   
Sbjct: 555 LLFDDI---TSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEIS-FVSLLYAC 610

Query: 546 NSSGKLKEAAEVIRTLRRK 564
           + SG + E       +R +
Sbjct: 611 SHSGLVDEGWRFFNIMRHE 629



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 200/361 (55%), Gaps = 7/361 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           +Q+ +   +   + A++L   L   G +D+   T  +++  C   +S+++ K V +++  
Sbjct: 66  TQLRRFCESGNLKNAVKL---LHVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRG 122

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF  D  + +++ LM+  CG + +A R+FD++     +  N+++  +  SGD+  +  L
Sbjct: 123 NGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKSGDFSGSIGL 182

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F  +     +  S TF+ + ++ + L  ++ G+QLH   LK GFG+   V  +L+  Y K
Sbjct: 183 FKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLK 242

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
              ++ A+ VFDEM+E+  + WN+II GY  +G +E+ L ++ +M  SG+++D  T   +
Sbjct: 243 NHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSV 302

Query: 339 IRIC--TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
              C  +RL SL   +  H   V+  F  +    + L+D YSK G ++ A+ VF +M  +
Sbjct: 303 FAGCADSRLISL--GRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGR 360

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           +V+S+ ++IAGY   G   EAV+LFE+M   G+ P+  T  AVL+ C+R+ L + G  + 
Sbjct: 361 SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVH 420

Query: 457 Q 457
           +
Sbjct: 421 E 421


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/662 (33%), Positives = 356/662 (53%), Gaps = 68/662 (10%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R+ EA+++F  +  +G       T   ++S+C    +    ++V S+++  G    + + 
Sbjct: 142 RFGEAIKMFLDMVTDG-LSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVA 200

Query: 169 NRVLLMHVRCGMMIDAR-------------------------------RLFDEMPERNLV 197
           N VL M+ +CG    AR                                LF+ MP+R +V
Sbjct: 201 NSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIV 260

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQLHSC 256
           S N +IAG   +G   +A   F  +    +      T  +++ A A L ++S+GKQ+H+ 
Sbjct: 261 SWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAY 320

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV---------------------------- 288
            L+        V+ ALI MY+K GS+E+A+GV                            
Sbjct: 321 ILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMK 380

Query: 289 -----FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
                FD MS +  V W  +I GY  +G+++EA++L+  M  SG + + +T + ++ +C 
Sbjct: 381 HAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCA 440

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-KNVISWN 402
            LA LE+ KQ H   +R         ++++V  Y++ G +  AR VFD++   K  ++W 
Sbjct: 441 SLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWT 500

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           ++I     HG GE+AV LFE+ML  G++P+ +TF+ VLSAC+  G  + G   FQ +   
Sbjct: 501 SMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDK 560

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
           H I P   HYACM++LL R GL  EA   I+  P +     W +LL+ACRV+ N +L + 
Sbjct: 561 HGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAEL 620

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPH 582
           AAEKL  ++P     Y  L N+Y++ G+  +AA++ +  + K ++     SW  +  + H
Sbjct: 621 AAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVH 680

Query: 583 VFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAV 641
           VF + D  H Q   +YR   +M  +I K G+VP+ +++L DVD++ ++ +LS HSEKLA+
Sbjct: 681 VFGADDVLHPQRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAI 740

Query: 642 AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
           AFGL++T + T L+I+++ R+C DCH AIK I+ V  REI++RDA+RFHHFKDG CSC D
Sbjct: 741 AFGLVSTPEKTTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKD 800

Query: 702 YW 703
           YW
Sbjct: 801 YW 802



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 137/517 (26%), Positives = 235/517 (45%), Gaps = 105/517 (20%)

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
           RE +R+F  + +   + +++  N +L ++ + G + DAR +F EMPER+ VS  +++ G+
Sbjct: 80  REARRLFDEIPAA--QRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGL 137

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
              G + EA  +FLD+  +       T   ++ + A  E   VG+++HS  +K+G    V
Sbjct: 138 NRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCV 197

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSE-------------------------------K 295
            V+ ++++MY KCG  E A+ VF+ M E                               +
Sbjct: 198 PVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDR 257

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSMIIRICTRLASLEHAKQA 354
           T V WN +IAGY  +G + +AL  +  M   S +  D FT + ++  C  L  +   KQ 
Sbjct: 258 TIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQV 317

Query: 355 HA------------------------GLVRHGFG---------LDIVANSALVDFYSKWG 381
           HA                        G V +  G         L++++ +AL++ Y K G
Sbjct: 318 HAYILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLG 377

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            ++ AR +FD M  ++V++W A+I GY  +G  +EA+ELF  M+ +G  PN  T  AVLS
Sbjct: 378 DMKHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLS 437

Query: 442 ACSRSGLSERGWEIF---------QSMSRDHKI----------------------KPRAM 470
            C+     E G +I          QS S  + I                      +   +
Sbjct: 438 VCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETV 497

Query: 471 HYACMIELLGREGLLDEAFALIRG---APFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
            +  MI  L + GL ++A  L         K  +  +  +L+AC   G ++ GK   ++L
Sbjct: 498 TWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQL 557

Query: 528 ---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
              +G+ PE +S+Y  ++++   +G   EA E I+ +
Sbjct: 558 QDKHGIVPE-MSHYACMVDLLARAGLFSEAQEFIQQM 593



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 151/336 (44%), Gaps = 41/336 (12%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           NVF   +L+ +Y+K G + DA+ VF EM E+  V W  ++ G    G   EA+ ++ +M 
Sbjct: 95  NVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMV 154

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
             G+    FT + ++  C    +    ++ H+ +V+ G    +   +++++ Y K G  E
Sbjct: 155 TDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAE 214

Query: 385 DARHVFDKMLCKNVISWNAL-------------------------------IAGYGNHGR 413
            AR VF++M  ++V SWNA+                               IAGY  +G 
Sbjct: 215 TARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGL 274

Query: 414 GEEAVELFEQML-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
             +A+  F +ML  + M P+  T  +VLSAC+  G+   G ++   + R  ++       
Sbjct: 275 NAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRS-RMPYIGQVT 333

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNM-WAALLTACRVNGNLELG--KFAAEKLYG 529
             +I +  + G ++ A  +++ A       + + ALL      G ++LG  K A E    
Sbjct: 334 NALISMYAKSGSVENARGVMQQAVMADLNVISFTALL-----EGYVKLGDMKHAREMFDV 388

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
           M    +  +  ++  Y  +G   EA E+ R + R G
Sbjct: 389 MSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSG 424


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/663 (33%), Positives = 354/663 (53%), Gaps = 70/663 (10%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R+ EA++    +  +G F     T   ++S+C   ++    ++V S+++  G    + + 
Sbjct: 144 RFGEAIKTLLDMTADG-FTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVA 202

Query: 169 NRVLLMHVRCG-------------------------------MMIDARRLFDEMPERNLV 197
           N VL M+ +CG                                M  A  LF+ MP R++V
Sbjct: 203 NSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIV 262

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQLHSC 256
           S N +IAG   +G   +A  LF  +  E S      T  +++ A A L  + +GKQ+H+ 
Sbjct: 263 SWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAY 322

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE------------------------- 291
            L+     N  V+ ALI  Y+K GS+E+A+ + D+                         
Sbjct: 323 ILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDME 382

Query: 292 --------MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
                   M+ +  V W  +I GY  +G ++EA+DL+  M   G + + +T + ++ +C 
Sbjct: 383 SAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCA 442

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KNVISW 401
            LA L++ KQ H   +R         ++A++  Y++ G    AR +FD+ +C  K  I+W
Sbjct: 443 SLACLDYGKQIHCRAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQ-VCWRKETITW 501

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
            ++I     HG+GEEAV LFE+ML  G+ P+ +T++ VLSACS +G    G   +  +  
Sbjct: 502 TSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKN 561

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           +H+I P   HYACM++LL R GL  EA   IR  P +     W +LL+ACRV+ N EL +
Sbjct: 562 EHQIAPEMSHYACMVDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAE 621

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
            AAEKL  ++P     Y  + N+Y++ G+  +AA + +  + K +R     SW  ++ + 
Sbjct: 622 LAAEKLLSIDPNNSGAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKI 681

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLA 640
           HVF + D  H Q   +Y    RM  EI   G+VP+ +++L DVD++ ++ +LS HSEKLA
Sbjct: 682 HVFGADDVVHPQRDAVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLA 741

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AFGLI+T + T L+++++ R+C DCH AIK I+ VT REI+VRDA+RFHHF+DG+CSC 
Sbjct: 742 IAFGLISTPEKTTLRVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCK 801

Query: 701 DYW 703
           DYW
Sbjct: 802 DYW 804



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 219/479 (45%), Gaps = 71/479 (14%)

Query: 142 GLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNM 201
           G   +R+ +R+F  +       +++  N +L M  + G + DAR +F EMPER+ VS  +
Sbjct: 77  GAGGLRDARRLFDEIPLA--RRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTV 134

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           ++ G+  +G + EA    LD+  +       T   ++ + A  +  +VG+++HS  +K+G
Sbjct: 135 MVVGLNRAGRFGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLG 194

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT------------------------ 297
            G  V V+ ++++MY KCG  E A  VF+ M  ++                         
Sbjct: 195 LGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFE 254

Query: 298 -------VGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLE 349
                  V WN +IAGY  +G   +AL L+  M  +S +  D FT + ++  C  L ++ 
Sbjct: 255 SMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVR 314

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK----------------- 392
             KQ HA ++R     +    +AL+  Y+K G +E+AR + D+                 
Sbjct: 315 IGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEG 374

Query: 393 ----------------MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
                           M  ++V++W A+I GY  +GR +EA++LF  M+  G  PN  T 
Sbjct: 375 YVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTL 434

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
            AVLS C+     + G +I     R    +  ++  A +I +  R G    A  +     
Sbjct: 435 AAVLSVCASLACLDYGKQIHCRAIRSLLERSSSVSNA-IITMYARSGSFPWARRMFDQVC 493

Query: 497 FKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
           ++     W +++ A   +G  E  +G F      G+EP++++ YV +L+  + +G + E
Sbjct: 494 WRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRIT-YVGVLSACSHAGFVNE 551



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 156/332 (46%), Gaps = 41/332 (12%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           NVF   +L+ M++K G + DA+GVF EM E+  V W  ++ G    G   EA+    +M 
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMT 156

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI-VANS------------ 371
             G     FT + ++  C    +    ++ H+ +V+ G G  + VANS            
Sbjct: 157 ADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAE 216

Query: 372 ------------------ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
                             A+V   +  GR++ A  +F+ M  ++++SWNA+IAGY  +G 
Sbjct: 217 TASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGL 276

Query: 414 GEEAVELFEQMLL-NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
             +A++LF +ML  + M P+  T  +VLSAC+  G    G ++   + R        +  
Sbjct: 277 DAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTN 336

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNM--WAALLTACRVNGNLELGKFAAEKLYG- 529
           A +I    + G ++ A  ++  +  +T  N+  + ALL      G++E    +A +++G 
Sbjct: 337 A-LISTYAKSGSVENARRIMDQS-METDLNVISFTALLEGYVKIGDME----SAREMFGV 390

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           M    +  +  ++  Y  +G+  EA ++ R++
Sbjct: 391 MNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSM 422



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 78/399 (19%), Positives = 157/399 (39%), Gaps = 94/399 (23%)

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW----GRIEDA 386
           DH+  + ++++C   A+    +  HA  V+ G        + L+ +Y +     G + DA
Sbjct: 27  DHY--ARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDA 84

Query: 387 RHVFDKMLC--KNVISWNAL-------------------------------IAGYGNHGR 413
           R +FD++    +NV +WN+L                               + G    GR
Sbjct: 85  RRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGR 144

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
             EA++    M  +G  P   T   VLS+C+ +     G ++       H    +    +
Sbjct: 145 FGEAIKTLLDMTADGFTPTQFTLTNVLSSCAVTQAGAVGRKV-------HSFVVKLGLGS 197

Query: 474 C------MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF-AAEK 526
           C      ++ + G+ G  + A  +    P ++  + W A+     V+ N  LG+   AE 
Sbjct: 198 CVPVANSVLNMYGKCGDAETASTVFERMPVRSVSS-WNAM-----VSLNTHLGRMDLAES 251

Query: 527 LYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVI-RTLRRKGL--------RMLPACS--- 573
           L+   P + + ++  ++  YN +G   +A ++  R L    +         +L AC+   
Sbjct: 252 LFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLG 311

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRK--VDRMMLEISKHGYVPEEKTLLPDVDEQEQRV 631
            + + KQ H ++      ++T+  Y     + ++   +K G V   + ++    E +  V
Sbjct: 312 NVRIGKQVHAYI------LRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNV 365

Query: 632 LSYHS-----------EKLAVAFGLINTSD---WTPLQI 656
           +S+ +           E     FG++N  D   WT + +
Sbjct: 366 ISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIV 404


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/573 (36%), Positives = 335/573 (58%), Gaps = 9/573 (1%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM---MIDARRLFDEMP 192
           LIS C    S RE+ ++ +Y + +  E D+    +++           M  AR LFD M 
Sbjct: 37  LISKC---NSERELMQIQAYAIKSHQE-DVSFNTKLINFCTESPTESSMSYARHLFDAMS 92

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           E ++V  N I  G   S + LE F LF+++ E+     + TF ++++A A  + +  G+Q
Sbjct: 93  EPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQ 152

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LH  ++K+G  DNV+V   LI+MY++C  ++ A+ VFD + E   V +N +I GYA    
Sbjct: 153 LHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNR 212

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
             EAL L+ EM+   +K +  T   ++  C  L SL+  K  H    +HGF   +  N+A
Sbjct: 213 PNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTA 272

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D ++K G ++DA  +F+ M  K+  +W+A+I  Y NHG+ E ++ +FE+M    ++P+
Sbjct: 273 LIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPD 332

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            +TFL +L+ACS +GL E G E F  M  +  I P   HY  M++LLGR G L++A+  I
Sbjct: 333 EITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFI 392

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
              P   T  +W  LL AC  + NLEL +  +E++  ++     +YV+L N+Y  + K +
Sbjct: 393 DKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLYARNKKWE 452

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
               + + ++ +    +P CS IEV    H F SGD     T +++R +D M+ E+   G
Sbjct: 453 AVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLAG 512

Query: 613 YVPEEKTLL-PDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           YVP+   ++  D+ +QE+ + L YHSEKLA+AFGL+NT   T +++V++ R+C DCH+A 
Sbjct: 513 YVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCRDCHSAA 572

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           KLI+++ GR++V+RD  RFHHF+DG CSC D+W
Sbjct: 573 KLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/361 (28%), Positives = 180/361 (49%), Gaps = 17/361 (4%)

Query: 77  TEELKESSLPDTQ-----MKKPSAGICSQIEKLVLNKRYREALELF----EILEFEGGFD 127
           TE   ESS+   +     M +P   I + I +     R    LE+F    EILE +   D
Sbjct: 73  TESPTESSMSYARHLFDAMSEPDIVIFNSIARGY--SRSTNPLEVFNLFVEILEDDLLPD 130

Query: 128 VGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL 187
             + T+ +L+ AC   +++ E +++    +  G + ++Y+   ++ M+  C  +  AR +
Sbjct: 131 --NYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCV 188

Query: 188 FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI 247
           FD + E  +V  N +I G        EA  LF ++  +       T  +++ + A L  +
Sbjct: 189 FDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSL 248

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
            +GK +H  A K GF   V V+ ALIDM++KCGS++DA  +F+ M  K T  W+ +I  Y
Sbjct: 249 DLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAY 308

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL-- 365
           A HG +E ++ ++  MR   V+ D  TF  ++  C+    +E  ++  + +V H FG+  
Sbjct: 309 ANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMV-HEFGIVP 367

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            I    ++VD   + G +EDA    DK+ +    + W  L+A   +H   E A ++ E++
Sbjct: 368 SIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERI 427

Query: 425 L 425
           L
Sbjct: 428 L 428


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/593 (36%), Positives = 338/593 (56%), Gaps = 34/593 (5%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLM--HVRCGMMIDARRLFDEMPERNLVSCNMI 202
           ++ E++++   ML TG   D    +++L        G +  AR +FD +   N    N +
Sbjct: 30  NMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTM 89

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           I G  +S +  EA LL+  +        + TF  +++A + +  +   +Q+H+  +KMGF
Sbjct: 90  IRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGF 149

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL------------- 309
           G  ++ + +L+++YSK G I+ A+ +FD++ ++ TV WN++I GY               
Sbjct: 150 GSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNH 209

Query: 310 ------------------HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
                              G  +EAL+L++ M+ +G+K+D+      ++ C  L  L+  
Sbjct: 210 MPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG 269

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K  HA + +H   +D +    L+D Y+K G +E+A  VF KM  K V  W A+I+GY  H
Sbjct: 270 KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIH 329

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           GRG EA+E F +M   G+ PN +TF  +L+ACS +GL      +F+SM R H  KP   H
Sbjct: 330 GRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEH 389

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           Y CM++LLGR GLL EA  LI   P K    +W ALL AC ++GNLELGK   + L  ++
Sbjct: 390 YGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVD 449

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P     Y+ L +I+ ++G+  +AA V R ++ +G+  LP CS I V    H FL+GD+SH
Sbjct: 450 PGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESH 509

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSD 650
            Q KEI   +++++  + + GY P+   LL D++++E+   + +HSEKLAV FGLI+T  
Sbjct: 510 PQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKP 569

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              ++IV++ R+C DCH  IKLI+ V  REI++RD +RFH FKDG C+CGDYW
Sbjct: 570 GMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 173/362 (47%), Gaps = 40/362 (11%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           +K   EAL L+  + +       + T+  L+ AC  + ++ E +++ ++++  GF  ++Y
Sbjct: 96  SKEPEEALLLYHHMLYHS-VPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIY 154

Query: 167 MRNRVLLMHVRCGMMIDARRLFDE-------------------------------MPERN 195
             N +L ++ + G +  AR LFD+                               MPERN
Sbjct: 155 TTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERN 214

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
           ++S   +I+G + +G   EA  LF  +        +    + ++A A L ++  GK +H+
Sbjct: 215 IISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHA 274

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
              K     +  + C LIDMY+KCG +E+A  VF +M EK    W  +I+GYA+HG   E
Sbjct: 275 YIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGRE 334

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALV 374
           AL+ + +M+ +GV+ +  TF+ I+  C+    +  AK     + R HGF   I     +V
Sbjct: 335 ALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMV 394

Query: 375 DFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQM--LLNGMRP 431
           D   + G +++A  + + M  K N   W AL+     HG     +EL +Q+  +L  + P
Sbjct: 395 DLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN----LELGKQIGKILIQVDP 450

Query: 432 NH 433
            H
Sbjct: 451 GH 452


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/591 (37%), Positives = 332/591 (56%), Gaps = 5/591 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E L LF ++  E   D    T  ++ISAC  L   R  + V  Y++ TGF  ++ + N +
Sbjct: 279 EGLRLFFMMR-EFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSL 337

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + MH   G   +A  +F +M  ++LVS   +I+G   +G   +A   +  +  E      
Sbjct: 338 IQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDE 397

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T A+++ A AGL L+  G  LH  A + G    V V+ +LIDMYSKC  I+ A  VF  
Sbjct: 398 ITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHR 457

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           +  K  + W +II G  L+  S EAL  + +M  S +K +  T   ++  C R+ +L   
Sbjct: 458 IPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCG 516

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-KNVISWNALIAGYGN 410
           K+ HA  +R G G D    +AL+D Y + GR+E A + F+   C K+V SWN L+ GY  
Sbjct: 517 KEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS--CEKDVASWNILLTGYAQ 574

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
            G+G  AVELF +M+ + + P+ +TF ++L ACSRSG+   G E F+SM     I P   
Sbjct: 575 QGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLK 634

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HYA +++LLGR G L++A+  I+  P      +W ALL ACR+  N+ELG+ AA+ ++ M
Sbjct: 635 HYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEM 694

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           + + +  Y++L N+Y  SGK  E A V + +R   L + P CSW+EV  Q H FL+GD  
Sbjct: 695 DTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAFLTGDDF 754

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSD 650
           H Q KEI   ++    ++   G    + +   D+D  +  +   HSE+LA+AFGLINT  
Sbjct: 755 HPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDIDASKAEIFCGHSERLAIAFGLINTVP 814

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
            TP+ + ++  +C +CHN +K I+ V  R I VRD  +FHHFKDG+CSCGD
Sbjct: 815 GTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGD 865



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 147/512 (28%), Positives = 253/512 (49%), Gaps = 23/512 (4%)

Query: 69  RPKP----NKIYTEELKESSLPDTQMKKPSAGICSQ-----IEKLVLNKRYREALELFEI 119
           +PKP      I T ++      +  +  PS+ I +Q     I +L L     +AL   + 
Sbjct: 26  KPKPLNFSRNIQTRQISLRKHHEISVLNPSS-ITAQNPNSLILELCLKGDLEKALIHLDS 84

Query: 120 LEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG 179
           ++ E    V   TY AL+  C   R+  E  RV SY+  T     + + N +L M VR G
Sbjct: 85  MQ-ELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNALLSMFVRFG 143

Query: 180 MMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFA 235
            +++A  +F +M ER+L S N+++ G   +G + EA    L+L+      G R    TF 
Sbjct: 144 DLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEA----LNLYHRMLWVGIRPDVYTFP 199

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
            ++R   GL  ++ G+++H   ++ GF  +V V  ALI MY KCG I  A+ VFD M  +
Sbjct: 200 CVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRR 259

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             + WN +I+GY  +    E L L++ MR+  V  D  T + +I  C  L      ++ H
Sbjct: 260 DRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVH 319

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
             +++ GF  ++  N++L+  +S  G  ++A  VF KM  K+++SW A+I+GY  +G  E
Sbjct: 320 GYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLPE 379

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
           +AVE +  M   G+ P+ +T  +VLSAC+  GL ++G  + +   R   +    +    +
Sbjct: 380 KAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRT-GLTSYVIVANSL 438

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN-GNLELGKFAAEKLYGMEPEK 534
           I++  +   +D+A  +    P K   + W +++   R+N  + E   F  + +  ++P  
Sbjct: 439 IDMYSKCRCIDKALEVFHRIPNKNVIS-WTSIILGLRLNYRSFEALFFFQQMILSLKPNS 497

Query: 535 LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           ++  V +L+     G L    E+     R GL
Sbjct: 498 VT-LVSVLSACARIGALSCGKEIHAHALRTGL 528



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 138/464 (29%), Positives = 227/464 (48%), Gaps = 22/464 (4%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + EAL L+  + + G       T+  ++  C GL  +   + V  +++  GFE D+ + N
Sbjct: 176 FDEALNLYHRMLWVG-IRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVN 234

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+V+CG +  AR +FD MP R+ +S N +I+G  ++   LE   LF  + E F D 
Sbjct: 235 ALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDP 294

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              T  ++I A   L    +G+++H   +K GF   V V+ +LI M+S  G  ++A+ VF
Sbjct: 295 DLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVF 354

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
            +M  K  V W  +I+GY  +G  E+A++ Y  M   GV  D  T + ++  C  L  L+
Sbjct: 355 SKMEFKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLD 414

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
                H    R G    ++  ++L+D YSK   I+ A  VF ++  KNVISW ++I G  
Sbjct: 415 KGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLR 474

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD----HKI 465
            + R  EA+  F+QM+L+ ++PN VT ++VLSAC+R G    G EI     R        
Sbjct: 475 LNYRSFEALFFFQQMILS-LKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGF 533

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
            P A     ++++  R G ++ A+              W  LLT     G    G  A E
Sbjct: 534 LPNA-----LLDMYVRCGRMEPAWNQFNSCEKDVAS--WNILLTGYAQQGK---GGLAVE 583

Query: 526 KLYGM-----EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
             + M      P++++ +  LL   + SG + +  E   ++  K
Sbjct: 584 LFHKMIESDVNPDEIT-FTSLLCACSRSGMVTDGLEYFESMEHK 626



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 92/195 (47%), Gaps = 4/195 (2%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I  L LN R  EAL  F+ +         S T  +++SAC  + ++   K + ++ L 
Sbjct: 468 SIILGLRLNYRSFEALFFFQQMIL--SLKPNSVTLVSVLSACARIGALSCGKEIHAHALR 525

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           TG   D ++ N +L M+VRCG M  A   F+   E+++ S N+++ G    G    A  L
Sbjct: 526 TGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVASWNILLTGYAQQGKGGLAVEL 584

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYS 277
           F  + E   +    TF +++ A +   +++ G +   S   K     N+    +++D+  
Sbjct: 585 FHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLG 644

Query: 278 KCGSIEDAQGVFDEM 292
           + G +EDA     +M
Sbjct: 645 RAGRLEDAYEFIKKM 659


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/632 (34%), Positives = 355/632 (56%), Gaps = 24/632 (3%)

Query: 80  LKESSLPDTQMKKPSAGICSQIEKL--VLNKRYREALELFEILEFEGGFDVGSSTYDALI 137
           L+  +LPD      S      +     +L    R  L    I  F+   +    +Y  L+
Sbjct: 91  LRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLL 150

Query: 138 SACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLV 197
              +    + E +R+F  M       D+     +L  + + G + +AR LFDEMP+RN+V
Sbjct: 151 GGLLDAGRVNEARRLFDEMPDR----DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVV 206

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257
           S   +I+G   +G+   A  LF    E   +    ++  M+     +  I  G    +  
Sbjct: 207 SWTAMISGYAQNGEVNLARKLF----EVMPERNEVSWTAML-----VGYIQAGHVEDAAE 257

Query: 258 LKMGFGDNVFVSC-ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
           L     ++   +C A++  + + G ++ A+ VF++M E+    W+ +I  Y  + +  EA
Sbjct: 258 LFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEA 317

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
           L  + EM   GV+ ++ +   I+ +C  LA L++ ++ HA ++R  F +D+ A SAL+  
Sbjct: 318 LSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITM 377

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           Y K G ++ A+ VF     K+++ WN++I GY  HG GE+A+ +F  M L GM P+ +T+
Sbjct: 378 YIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITY 437

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
           +  L+ACS +G  + G EIF SM+ +  I+P A HY+CM++LLGR GL++EAF LI+  P
Sbjct: 438 IGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMP 497

Query: 497 FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
            +    +W AL+ ACR++ N E+ +FAA+KL  +EP     YV+L +IY S G+ ++A++
Sbjct: 498 VEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASK 557

Query: 557 VIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD----QSHVQTKEIYRKVDRMMLEISKHG 612
           + + +  + L   P CSWIE  K+ H+F SGD      H     I  K+D +++E    G
Sbjct: 558 MRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLME---SG 614

Query: 613 YVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           Y  +   +L D+D EQ+   L YHSE+ AVA+GL+   +  P++++++ R+C DCH+AIK
Sbjct: 615 YSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIK 674

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           LIA +T REI++RDA+RFHHFKDG CSC DYW
Sbjct: 675 LIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 156/373 (41%), Gaps = 67/373 (17%)

Query: 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
           R G +  AR  F+ MP R   S N ++AG   +     A  LF  +        SR  A+
Sbjct: 29  RAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRM-------PSRDLAS 81

Query: 237 MIRASAGLELISVGKQLHSCAL-KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
                +GL L        + AL  + F  +V    +L+  Y + G + DA  +F +M E+
Sbjct: 82  YNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER 141

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             V +  ++ G    G   EA  L+ EM D                              
Sbjct: 142 NHVSYTVLLGGLLDAGRVNEARRLFDEMPDR----------------------------- 172

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
                     D+VA +A++  Y + GRI +AR +FD+M  +NV+SW A+I+GY  +G   
Sbjct: 173 ----------DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVN 222

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC- 474
            A +LFE M       N V++ A+L    ++G  E   E+F +M  +H +       AC 
Sbjct: 223 LARKLFEVM----PERNEVSWTAMLVGYIQAGHVEDAAELFNAMP-EHPVA------ACN 271

Query: 475 -MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL--ELGKFAAEKLYGME 531
            M+   G+ G++D A  +      +     W+A++ A   N  L   L  F      G+ 
Sbjct: 272 AMMVGFGQRGMVDAAKTVFEKM-CERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVR 330

Query: 532 PEKLSNYVVLLNI 544
           P    NY  +++I
Sbjct: 331 P----NYPSVISI 339



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 103/247 (41%), Gaps = 61/247 (24%)

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM------ 424
           +A +   ++ G IE AR  F+ M  +   S+NAL+AGY  +   + A+ LF +M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 425 ----LLNGMR-------------------PNHVTFLAVLSACSRSGLSERGWEIFQSMS- 460
               L++G+                    P+ V+F ++L    R GL      +FQ M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 461 RDH------------------------KIKPR-AMHYACMIELLGREGLLDEAFALIRGA 495
           R+H                        ++  R  + +  M+    + G + EA AL    
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEA 554
           P +   + W A+++    NG + L    A KL+ + PE+   ++  +L  Y  +G +++A
Sbjct: 201 PKRNVVS-WTAMISGYAQNGEVNL----ARKLFEVMPERNEVSWTAMLVGYIQAGHVEDA 255

Query: 555 AEVIRTL 561
           AE+   +
Sbjct: 256 AELFNAM 262


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/530 (36%), Positives = 319/530 (60%), Gaps = 1/530 (0%)

Query: 175 HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF 234
           +V+ G +  AR+LFDEMP RN+ + N ++AG+ +SG   E+   F  +  E         
Sbjct: 118 YVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGL 177

Query: 235 ATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE 294
            ++ R  AGL  +  G+Q+H+  ++ G   ++ V  +L  MY +CG + D +     +  
Sbjct: 178 GSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPS 237

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
              V  NT I+G   +G +E AL+ +  MR +GV+ +  TF   +  C+ LA+L   +Q 
Sbjct: 238 LNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQI 297

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414
           HA  ++ G    +   ++LV  YS+ G + D+  V  +    +++  +A+I+ YG HG G
Sbjct: 298 HALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHG 357

Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474
           ++AV LF+QM+  G  PN VTFL +L ACS SGL + G   F+ M++ + ++P   HY C
Sbjct: 358 QKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTC 417

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534
           +++LLGR G L+EA  LI   P +    +W  LL+AC+     ++ +  AE++  ++P  
Sbjct: 418 IVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHD 477

Query: 535 LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQT 594
            ++YV+L NI  +S + ++ ++V  T+R + +R  P  SW+E+K Q H F +GD+SH + 
Sbjct: 478 SASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQ 537

Query: 595 KEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTP 653
           +EI   ++ MM  I + GY P+   +  D++++E+ V L++HSEKLA+AF  ++  +  P
Sbjct: 538 REIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVP 597

Query: 654 LQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++++++ R+C DCH AIKL++ V GREIVVRD SRFHHFKDG CSCGDYW
Sbjct: 598 IRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 647



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 146/333 (43%), Gaps = 37/333 (11%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           NV     LI  Y K G +E A+ +FDEM  +    WN ++AG    G +EE+L  ++ MR
Sbjct: 107 NVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMR 166

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
             G++ D +    + R C  L  +   +Q HA +VR G   D+   S+L   Y + G + 
Sbjct: 167 REGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLR 226

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           D       +   N++S N  I+G   +G  E A+E F  M   G+  N VTF++ +++CS
Sbjct: 227 DGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCS 286

Query: 445 RSGLSERGWEIFQSMSRD--HKIKPRA-----MHYAC----------------------- 474
                 +G +I     +    K+ P       M+  C                       
Sbjct: 287 DLAALAQGQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSA 346

Query: 475 MIELLGREGLLDEAFALIR---GAPFKTTKNMWAALLTACRVNGNLELGKFAAE---KLY 528
           MI   G  G   +A  L +    A  +  +  +  LL AC  +G  + G    E   K Y
Sbjct: 347 MISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTY 406

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           G++P  + +Y  ++++   SG L EA ++I ++
Sbjct: 407 GLQP-SVKHYTCIVDLLGRSGCLNEAEDLILSM 438



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 145/293 (49%), Gaps = 2/293 (0%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +L   C GLR +   ++V +Y++ +G + D+ + + +  M++RCG + D       +P  
Sbjct: 179 SLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSL 238

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           N+VSCN  I+G   +GD   A   F  +     +  + TF + + + + L  ++ G+Q+H
Sbjct: 239 NIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIH 298

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           + A+K G    V V  +L+ MYS+CG + D++ V  E S    V  + +I+ Y  HG+ +
Sbjct: 299 ALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQ 358

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSAL 373
           +A+ L+ +M  +G + +  TF  ++  C+     +        + + +G    +   + +
Sbjct: 359 KAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCI 418

Query: 374 VDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQML 425
           VD   + G + +A  +   M  + + + W  L++      + + A  + E+++
Sbjct: 419 VDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVI 471



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 138/350 (39%), Gaps = 54/350 (15%)

Query: 93  PSAGICS---QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV 149
           PS  I S    I     N     ALE F ++    G +  + T+ + +++C  L ++ + 
Sbjct: 236 PSLNIVSCNTTISGRTQNGDAEGALEFFCLMR-GAGVEANAVTFVSAVTSCSDLAALAQG 294

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           +++ +  + TG +  + +   ++ M+ RCG + D+ R+  E    +LV C+ +I+     
Sbjct: 295 QQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFH 354

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM-GFGDNVFV 268
           G   +A  LF  +    ++    TF T++ A +   L   G        K  G   +V  
Sbjct: 355 GHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKH 414

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
              ++D+  + G + +A+ +   M  +   V W T+++                      
Sbjct: 415 YTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQK---------------- 458

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
                  F M  RI  R+  L+    A   L+      +I A S      S+W   ED  
Sbjct: 459 ------KFDMAERIAERVIELDPHDSASYVLLS-----NIRATS------SRW---EDVS 498

Query: 388 HVFDKMLCKNV-----ISW-------NALIAGYGNHGRGEEAVELFEQML 425
            V + M  +NV     +SW       +    G  +H R  E VE  E+M+
Sbjct: 499 KVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREIVECLEEMM 548


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/604 (33%), Positives = 352/604 (58%), Gaps = 3/604 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V+N      LE+F I     G +V  +T  +++ AC  + ++   + +  + + 
Sbjct: 266 SMINGCVVNGFSGNGLEIF-IQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVK 324

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
             F  ++   N +L M+ +CG +  A  +F +M +  +VS   IIA  +  G Y +A  L
Sbjct: 325 ACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGL 384

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F ++  +       T  +++ A A    +  G+ +HS  +K G G N+ V+ ALI+MY+K
Sbjct: 385 FDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAK 444

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CGS+E+A+ VF ++  K  V WNT+I GY+ +    EAL+L+ +M+    K D  T + +
Sbjct: 445 CGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACV 503

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C  LA+L+  ++ H  ++R G+  D+    ALVD Y+K G +  A+ +FD +  K++
Sbjct: 504 LPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDL 563

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           ISW  +IAGYG HG G EA+  F +M + G+ P+  +F A+L+ACS SGL   GW+ F S
Sbjct: 564 ISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNS 623

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M  +  ++P+  HYAC+++LL R G L +A+  I   P K    +W  LL+ CR++ +++
Sbjct: 624 MRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVK 683

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           L +  AE ++ +EP+    YVVL N+Y  + K +E  ++ + ++++G +  P CSWIEV 
Sbjct: 684 LAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVG 743

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSE 637
            + ++F++G+  H Q K+I   + ++ +++    Y    + +L + D+ E+ ++   HSE
Sbjct: 744 GKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSE 803

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           K A+AFG++N      +++ ++ R+C DCH   K ++  T  EIV+RD++RFHHFKDG+C
Sbjct: 804 KSAMAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLC 863

Query: 698 SCGD 701
           SC D
Sbjct: 864 SCRD 867



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 209/400 (52%), Gaps = 4/400 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           ++I K       R A+EL   L     +++G ++Y +++  C   +S+ + KRV S ++S
Sbjct: 66  AKINKFCEMGDLRNAIEL---LTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G   D  +  +++ M+V CG ++  R++FD++    +   N++++     G++ E+  L
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 182

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F  + +        TF  +++  A L  +   K++H   LK+GFG N  V  +LI  Y K
Sbjct: 183 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 242

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            G +E A  +FDE+SE   V WN++I G  ++G+S   L+++ +M   GV++D  T   +
Sbjct: 243 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 302

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C  + +L   +  H   V+  F  ++V ++ L+D YSK G +  A  VF KM    +
Sbjct: 303 LVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTI 362

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SW ++IA Y   G   +A+ LF++M   G+RP+  T  +++ AC+ S   ++G ++   
Sbjct: 363 VSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSY 422

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK 498
           + ++       +  A +I +  + G ++EA  +    P K
Sbjct: 423 VIKNGMGSNLPVTNA-LINMYAKCGSVEEARLVFSKIPVK 461


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/598 (35%), Positives = 353/598 (59%), Gaps = 9/598 (1%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL-YMR 168
           ++EAL +F  ++ E   +    T   ++ AC  L  ++E + V  +++    +P+L ++ 
Sbjct: 283 FQEALNVFAKMQ-EFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLG 341

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
             ++ ++   G + D  ++F+ + E+ ++S N +I+    +G   EA LLF+ +  +   
Sbjct: 342 PALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLM 401

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMG-FGDNVFVSCALIDMYSKCGSIEDAQG 287
             S + A+ + A   +    +G Q+H   +K G F D  FV  ALIDMY+KCG +  A  
Sbjct: 402 PDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFND--FVQNALIDMYAKCGFVHSANK 459

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           +F+++ EK+ V WN++I G++ +GYS EA+ L+ +M  + VKMD  TF  +I+ C+ L  
Sbjct: 460 MFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGY 519

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           LE  K  H  L+ +G   D   ++AL D YSK G ++ A  VFD+M  ++++SW+ +IAG
Sbjct: 520 LEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAG 579

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           YG HG+    + LF QML +G++PN +TF+ +LSACS +G  E G   F SMS +  ++P
Sbjct: 580 YGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMS-EFGVEP 638

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
           +  H+ACM++LL R G L+ A+ +I   PF    ++W ALL  CR++  +++ K   + L
Sbjct: 639 KHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNL 698

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
             ++      Y +L NIY   G   +  +V   ++ KGLR +P  S IE+ K+ + F  G
Sbjct: 699 LDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPG 758

Query: 588 DQSHVQTKEIYRKVD--RMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGL 645
           D SH QTK+IYR ++  R ++    +   P+   +      +E  V+S HSEKLA+AFG+
Sbjct: 759 DTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVS-HSEKLAIAFGI 817

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           INT   T L+I ++ R+C DCH+  K+ + +TGREI++RD +RFH F++G CSC DYW
Sbjct: 818 INTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 875



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 117/493 (23%), Positives = 228/493 (46%), Gaps = 38/493 (7%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + EA+ L+  + ++    + +  + +++ AC G   +    +V   ++  GFE D  +  
Sbjct: 80  FEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVET 139

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            +L M+     + DA + FD MP R++V+ + I+   + +G   E   +F  +  E  + 
Sbjct: 140 SLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEP 199

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
            S T  ++  A + L  + +G+ +H   ++     N  ++ +LI MY K G +  A+ +F
Sbjct: 200 DSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLF 259

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           + +  + T  W  +I+ Y   G  +EAL+++ +M++  ++ +  T   ++  C RL  ++
Sbjct: 260 ENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVK 319

Query: 350 HAKQAHAGLVRHGFG--LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
             +  H  ++R      LD +   AL++ Y+  G + D   VF+ +  K ++SWN LI+ 
Sbjct: 320 EGRSVHGFVIRRAMDPELDFLG-PALMELYADTGNLRDCHKVFETIKEKTILSWNTLISI 378

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI---------FQS 458
           +  +G+ EEA+ LF QM   G+ P+  +  + LSAC     S+ G +I         F  
Sbjct: 379 FTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFND 438

Query: 459 MSRD-------------------HKIKPRAM-HYACMIELLGREGLLDEAFALIRGAPF- 497
             ++                    KIK +++  +  MI    + G   EA  L       
Sbjct: 439 FVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMN 498

Query: 498 --KTTKNMWAALLTACRVNGNLELGKFAAEKL--YGMEPEKLSNYVVLLNIYNSSGKLKE 553
             K  K  + +++ AC   G LE GK+   KL  YG+  +   +   L ++Y+  G+L+ 
Sbjct: 499 CVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLD-TALTDMYSKCGELQM 557

Query: 554 AAEVIRTLRRKGL 566
           A  V   +  + +
Sbjct: 558 AHGVFDRMSERSI 570



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 182/388 (46%), Gaps = 4/388 (1%)

Query: 149 VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
           + ++ +++  TG         +++  + + G+   ++R+FD  P+ +     ++I   + 
Sbjct: 17  LTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVW 76

Query: 209 SGDYLEAFLLFLDL-WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
            G + EA  L+ ++ +++ +   +  F ++++A +G   +SVG ++H   +K GF  +  
Sbjct: 77  GGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAV 136

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
           V  +L+ MY +   ++DA   FD M  +  V W++I+  +  +G + E LD++ +M    
Sbjct: 137 VETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEA 196

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           V+ D  T   +   C+ L SL   +  H  +VR     +   N++L+  Y K G +  A 
Sbjct: 197 VEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAE 256

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
            +F+ + C+    W  +I+ Y   G  +EA+ +F +M    M PN VT + VL AC+R G
Sbjct: 257 RLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLG 316

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
             + G  +   + R             ++EL    G L +   +      KT  + W  L
Sbjct: 317 RVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILS-WNTL 375

Query: 508 LTACRVNGNLE--LGKFAAEKLYGMEPE 533
           ++    NG  E  L  F   +  G+ P+
Sbjct: 376 ISIFTRNGQPEEALLLFVQMQTQGLMPD 403



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 85/196 (43%), Gaps = 5/196 (2%)

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
           R A+     Q HA L   G      A++ L++ Y++ G  E ++ VFD     +   W  
Sbjct: 10  RCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGV 69

Query: 404 LIAGYGNHGRGEEAVELFEQMLL-NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           LI  Y   G  EEAV L+ +M+  +  + ++  F +VL ACS  G    G ++   + + 
Sbjct: 70  LIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIK- 128

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG-- 520
              +  A+    ++ + G    LD+A       P +     W++++     NG    G  
Sbjct: 129 CGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVV-AWSSIVLNFVQNGQASEGLD 187

Query: 521 KFAAEKLYGMEPEKLS 536
            F+      +EP+ ++
Sbjct: 188 MFSQMISEAVEPDSVT 203


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 183/459 (39%), Positives = 295/459 (64%), Gaps = 2/459 (0%)

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           + +G+ +HS  ++ GFG  ++V  +L+ +Y+ CG +  A  VFD+M EK  V WN++I G
Sbjct: 4   VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVING 63

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           +A +G  EEAL LY EM   G+K D FT   ++  C ++ +L   K+ H  +++ G   +
Sbjct: 64  FAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRN 123

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM-L 425
           + +++ L+D Y++ GR+E+A+ +FD+M+ KN +SW +LI G   +G G+EA+ELF+ M  
Sbjct: 124 LHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMES 183

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
             G+ P  +TF+ +L ACS  G+ + G+E F+ M  ++KI+PR  H+ CM++LL R G +
Sbjct: 184 TEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQV 243

Query: 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
            +A+  I+  P +    +W  LL AC V+G+ +L +FA  ++  +EP    +YV+L N+Y
Sbjct: 244 KKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMY 303

Query: 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
            S  +  +  ++ + + R G++ +P  S +EV  + H FL GD+SH Q+  IY K+  M 
Sbjct: 304 ASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMT 363

Query: 606 LEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICC 664
             +   GYVP+   +  DV+E+E +  + YHSEK+A+AF LI+T + +P+ +V++ R+C 
Sbjct: 364 GRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCA 423

Query: 665 DCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           DCH AIKL++ V  REIVVRD SRFHHFK+G CSC DYW
Sbjct: 424 DCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 462



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 171/333 (51%), Gaps = 30/333 (9%)

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           +  +R  + + S ++ +GF   +Y++N +L ++  CG +  A ++FD+MPE++LV+ N +
Sbjct: 1   MADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSV 60

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           I G  ++G   EA  L+ ++  +       T  +++ A A +  +++GK++H   +K+G 
Sbjct: 61  INGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGL 120

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             N+  S  L+D+Y++CG +E+A+ +FDEM +K +V W ++I G A++G+ +EA++L+  
Sbjct: 121 TRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKY 180

Query: 323 MRDS-GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL------------DIVA 369
           M  + G+     TF  I+  C+           H G+V+ GF               I  
Sbjct: 181 MESTEGLLPCEITFVGILYACS-----------HCGMVKEGFEYFRRMREEYKIEPRIEH 229

Query: 370 NSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
              +VD  ++ G+++ A      M +  NV+ W  L+     HG  + A   F ++ +  
Sbjct: 230 FGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAE--FARIQILQ 287

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           + PNH     +LS       SE+ W   Q + +
Sbjct: 288 LEPNHSGDYVLLSNMY---ASEQRWSDVQKIRK 317



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 28/233 (12%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEG----GFDVGSSTYDALISACIGLRSIREVKRVFS 154
           S I     N +  EAL L+  +  +G    GF + S     L+SAC  + ++   KRV  
Sbjct: 59  SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVS-----LLSACAKIGALTLGKRVHV 113

Query: 155 YMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLE 214
           YM+  G   +L+  N +L ++ RCG + +A+ LFDEM ++N VS   +I G+  +G   E
Sbjct: 114 YMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKE 173

Query: 215 AFLLF--LDLWEEFSDCGSRTFATMIRASA-------GLELISVGKQLHSCALKM-GFGD 264
           A  LF  ++  E    C   TF  ++ A +       G E     ++ +    ++  FG 
Sbjct: 174 AIELFKYMESTEGLLPC-EITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFG- 231

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEA 316
                  ++D+ ++ G ++ A      M  +   V W T++    +HG S+ A
Sbjct: 232 ------CMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLA 278


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/638 (34%), Positives = 349/638 (54%), Gaps = 38/638 (5%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I  L      REA + F +  F       +S +   I +C   +S+   K++   ++ 
Sbjct: 18  TAIATLCSKGNLREAFQRFRLNIF-----TNTSLFTPFIQSCTTRQSLPSGKQLHCLLVV 72

Query: 159 TGFEPDLYMRNRVLLMH-------------------------------VRCGMMIDARRL 187
           +GF  D ++ N ++ M+                               VR G +++AR++
Sbjct: 73  SGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKV 132

Query: 188 FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI 247
           FDEMP+R L + N +IAG+I      E   LF ++          T  ++   SAGL  +
Sbjct: 133 FDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSV 192

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           S+G+Q+H   +K G   ++ V+ +L  MY + G ++D + V   M  +  V WNT+I G 
Sbjct: 193 SIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGN 252

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           A +G  E  L LY  M+ SG + +  TF  ++  C+ LA     +Q HA  ++ G    +
Sbjct: 253 AQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVV 312

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML-L 426
              S+L+  YSK G + DA   F +   ++ + W+++I+ YG HG+G+EA+ELF  M   
Sbjct: 313 AVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQ 372

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
             M  N V FL +L ACS SGL ++G E+F  M   +  KP   HY C+++LLGR G LD
Sbjct: 373 TNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLD 432

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546
           +A A+IR  P KT   +W  LL+AC ++ N E+ +   +++  ++P   + YV+L N++ 
Sbjct: 433 QAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHA 492

Query: 547 SSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMML 606
           S+ + ++ +EV +++R K ++     SW E K + H F  GD+S  ++KEIY  +  + L
Sbjct: 493 SAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTL 552

Query: 607 EISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCD 665
           E+   GY P+  ++L D+DE+E+   L  HSEKLAVAF L+   +  P++I+++ R+C D
Sbjct: 553 EMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSD 612

Query: 666 CHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           CH A K I+++  REI +RD SRFHHF +G CSCGDYW
Sbjct: 613 CHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDYW 650


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/530 (36%), Positives = 319/530 (60%), Gaps = 1/530 (0%)

Query: 175 HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF 234
           +V+ G +  AR+LFDEMP RN+ + N ++AG+ +SG   E+   F  +  E         
Sbjct: 10  YVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGL 69

Query: 235 ATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE 294
            ++ R  AGL  +  G+Q+H+  ++ G   ++ V  +L  MY +CG + D +     +  
Sbjct: 70  GSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPS 129

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
              V  NT I+G   +G +E AL+ +  MR +GV+ +  TF   +  C+ LA+L   +Q 
Sbjct: 130 LNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQI 189

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414
           HA  ++ G    +   ++LV  YS+ G + D+  V  +    +++  +A+I+ YG HG G
Sbjct: 190 HALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHG 249

Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474
           ++AV LF+QM+  G  PN VTFL +L ACS SGL + G   F+ M++ + ++P   HY C
Sbjct: 250 QKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTC 309

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534
           +++LLGR G L+EA  LI   P +    +W  LL+AC+     ++ +  AE++  ++P  
Sbjct: 310 IVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHD 369

Query: 535 LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQT 594
            ++YV+L NI  +S + ++ ++V  T+R + +R  P  SW+E+K Q H F +GD+SH + 
Sbjct: 370 SASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQ 429

Query: 595 KEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTP 653
           +EI   ++ MM  I + GY P+   +  D++++E+ V L++HSEKLA+AF  ++  +  P
Sbjct: 430 REIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVP 489

Query: 654 LQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++++++ R+C DCH AIKL++ V GREIVVRD SRFHHFKDG CSCGDYW
Sbjct: 490 IRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 144/326 (44%), Gaps = 37/326 (11%)

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
           LI  Y K G +E A+ +FDEM  +    WN ++AG    G +EE+L  ++ MR  G++ D
Sbjct: 6   LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPD 65

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
            +    + R C  L  +   +Q HA +VR G   D+   S+L   Y + G + D      
Sbjct: 66  EYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALR 125

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
            +   N++S N  I+G   +G  E A+E F  M   G+  N VTF++ +++CS      +
Sbjct: 126 ALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQ 185

Query: 452 GWEIFQSMSRD--HKIKPRA-----MHYAC-----------------------MIELLGR 481
           G +I     +    K+ P       M+  C                       MI   G 
Sbjct: 186 GQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGF 245

Query: 482 EGLLDEAFALIR---GAPFKTTKNMWAALLTACRVNGNLELGKFAAE---KLYGMEPEKL 535
            G   +A  L +    A  +  +  +  LL AC  +G  + G    E   K YG++P  +
Sbjct: 246 HGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQP-SV 304

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTL 561
            +Y  ++++   SG L EA ++I ++
Sbjct: 305 KHYTCIVDLLGRSGCLNEAEDLILSM 330



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 145/293 (49%), Gaps = 2/293 (0%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +L   C GLR +   ++V +Y++ +G + D+ + + +  M++RCG + D       +P  
Sbjct: 71  SLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSL 130

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           N+VSCN  I+G   +GD   A   F  +     +  + TF + + + + L  ++ G+Q+H
Sbjct: 131 NIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQGQQIH 190

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           + A+K G    V V  +L+ MYS+CG + D++ V  E S    V  + +I+ Y  HG+ +
Sbjct: 191 ALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQ 250

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSAL 373
           +A+ L+ +M  +G + +  TF  ++  C+     +        + + +G    +   + +
Sbjct: 251 KAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCI 310

Query: 374 VDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQML 425
           VD   + G + +A  +   M  + + + W  L++      + + A  + E+++
Sbjct: 311 VDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVI 363



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 138/350 (39%), Gaps = 54/350 (15%)

Query: 93  PSAGICS---QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV 149
           PS  I S    I     N     ALE F ++    G +  + T+ + +++C  L ++ + 
Sbjct: 128 PSLNIVSCNTTISGRTQNGDAEGALEFFCLMR-GAGVEANAVTFVSAVTSCSDLAALAQG 186

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           +++ +  + TG +  + +   ++ M+ RCG + D+ R+  E    +LV C+ +I+     
Sbjct: 187 QQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFH 246

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM-GFGDNVFV 268
           G   +A  LF  +    ++    TF T++ A +   L   G        K  G   +V  
Sbjct: 247 GHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKH 306

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
              ++D+  + G + +A+ +   M  +   V W T+++                      
Sbjct: 307 YTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQK---------------- 350

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
                  F M  RI  R+  L+    A   L+      +I A S      S+W   ED  
Sbjct: 351 ------KFDMAERIAERVIELDPHDSASYVLLS-----NIRATS------SRW---EDVS 390

Query: 388 HVFDKMLCKNV-----ISW-------NALIAGYGNHGRGEEAVELFEQML 425
            V + M  +NV     +SW       +    G  +H R  E VE  E+M+
Sbjct: 391 KVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREIVECLEEMM 440



 Score = 39.3 bits (90), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SWN LI GY  +G  E A +LF++M       N  T+ A+++  + SGL+E     F +
Sbjct: 1   MSWNILIGGYVKNGDLETARKLFDEMPAR----NVATWNAMVAGLTNSGLNEESLGFFFA 56

Query: 459 MSRD 462
           M R+
Sbjct: 57  MRRE 60


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/584 (37%), Positives = 344/584 (58%), Gaps = 9/584 (1%)

Query: 128  VGSSTYDAL--ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
            +G S + A+  +S+C GL  +   +++    +  G   D  + N ++ M+  CG M +  
Sbjct: 480  IGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECW 539

Query: 186  RLFDEMPERNLVSCNMIIAGMIDS-GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
             +F+ M   ++VS N I+  M  S     E+  +F ++ +        TF   + A   L
Sbjct: 540  EIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPL 599

Query: 245  ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTI 303
             ++ +GKQ+HS  LK G  ++  V  AL+  Y+K G ++  + +F  MS  +  + WN++
Sbjct: 600  SVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSM 659

Query: 304  IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
            I+GY  +G+ +EA+D    M  S   MDH TFS+++  C  +A+LE   + HA  +R   
Sbjct: 660  ISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHL 719

Query: 364  GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
              D+V  SALVD YSK GRI+ A  VF  M  KN  SWN++I+GY  HG G +A+E+FE+
Sbjct: 720  ESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEE 779

Query: 424  MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
            M  +G  P+HVTF++VLSACS +GL ERG + F+ M  D+ I PR  HY+C+I+LLGR G
Sbjct: 780  MQESGESPDHVTFVSVLSACSHAGLVERGLDYFELM-EDYGILPRIEHYSCVIDLLGRAG 838

Query: 484  LLDEAFALIRGAPFKTTKNMWAALLTACRVN---GNLELGKFAAEKLYGMEPEKLSNYVV 540
             LD+    ++  P K    +W  +L AC+ +     ++LG  A+  L  +EP+   NYV+
Sbjct: 839  ELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVNYVL 898

Query: 541  LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRK 600
                + + G+ ++ A+    ++   ++     SW+ +    H F++GD+SH  TKEIY K
Sbjct: 899  SSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLTDGVHTFIAGDRSHPNTKEIYEK 958

Query: 601  VDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLS-YHSEKLAVAFGLINTSDWTPLQIVQS 659
            ++ ++ +I   GYVP  + +L D++E+ +  L  YHSEKLAVAF L  +S   P++I+++
Sbjct: 959  LNFLIQKIRNAGYVPLTEYVLHDLEEENKEELLRYHSEKLAVAFVLTRSSSGGPIRIMKN 1018

Query: 660  HRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             R+C DCH A + I+ + GR+I++RD+ RFHHFKDG CSCGDYW
Sbjct: 1019 LRVCGDCHTAFRYISQIVGRQIILRDSIRFHHFKDGKCSCGDYW 1062



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 105/394 (26%), Positives = 195/394 (49%), Gaps = 9/394 (2%)

Query: 132 TYDALISAC-IGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           T+ +LI+A  +   S+  + ++F  +L +G   DLY+ + ++    R GM+ +A+ ++  
Sbjct: 279 TFGSLITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLG 338

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA----SAGLEL 246
           + ERN V+ N +IAG++       A  +F+    + +     T+  ++ A    S   + 
Sbjct: 339 LKERNAVTLNGLIAGLVKQQHGEAAAEIFMGA-RDSAAVNVDTYVVLLSAIAEFSTAEQG 397

Query: 247 ISVGKQLHSCALKMG-FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
           +  G+++H+  L+ G     + VS  L++MY+KCG+I+ A  VF  M  +  + WNTII 
Sbjct: 398 LRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIIT 457

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
               +GY E A+  Y  MR + +   +F     +  C  L  L   +Q H   V+ G  L
Sbjct: 458 ALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYL 517

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG-NHGRGEEAVELFEQM 424
           D   ++ALV  Y + GR+ +   +F+ M   +V+SWN+++     +     E+V++F  M
Sbjct: 518 DTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQVFSNM 577

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
           + +G+ PN VTF+  L+A +   + E G +I   M +    +  A+  A M     + G 
Sbjct: 578 MKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALM-SCYAKSGD 636

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           +D    L      +     W ++++    NG+L+
Sbjct: 637 VDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQ 670



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 176/377 (46%), Gaps = 23/377 (6%)

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           G   DL++ N ++  + +   +  ARR+FD MP RN VS   +I+G + SG   +AF LF
Sbjct: 95  GLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLF 154

Query: 220 LDLWEEFSDC--GSRTFATMIRA--SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
             +  E   C   S TF +++RA   +G + +    Q+H    K  F  N  V  ALI M
Sbjct: 155 RAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISM 214

Query: 276 YSKC--GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR--DSGVKM- 330
           Y  C  G    AQ VFD    +  + WN +++ YA  G +     L+  M+  DSG+++ 
Sbjct: 215 YGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELR 274

Query: 331 --DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
             +H   S+I        SL    Q    +++ G   D+   SALV  +++ G +++A+ 
Sbjct: 275 PTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKD 334

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           ++  +  +N ++ N LIAG      GE A E+F     +    N  T++ +LSA +    
Sbjct: 335 IYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIF-MGARDSAAVNVDTYVVLLSAIAEFST 393

Query: 449 SERGW----EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA---FALIRGAPFKTTK 501
           +E+G     E+   + R   I  +      ++ +  + G +D+A   F L+        +
Sbjct: 394 AEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEA----RDR 449

Query: 502 NMWAALLTACRVNGNLE 518
             W  ++TA   NG  E
Sbjct: 450 ISWNTIITALDQNGYCE 466



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 138/315 (43%), Gaps = 35/315 (11%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           + LH   +K G   ++F++  L++ Y+K   ++ A+ VFD M  +  V W  +I+G+ L 
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLS 144

Query: 311 GYSEEALDLYYEM--RDSGVKMDHFTFSMIIRICTRLAS--LEHAKQAHAGLVRHGFGLD 366
           G  E+A  L+  M     G +   FTF  ++R C       L  A Q H  + +  F  +
Sbjct: 145 GLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSN 204

Query: 367 IVANSALVDFYSKW--GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
               +AL+  Y     G    A+ VFD    +++I+WNAL++ Y   G       LF  M
Sbjct: 205 TTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAM 264

Query: 425 LLNG----MRPNHVTFLAV-----LSACSRSGLSERGWEIFQS-MSRDHKIKPRAMHYAC 474
             +     +RP   TF ++     LS+CS   L +    + +S  S D  +       + 
Sbjct: 265 QYDDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVG------SA 318

Query: 475 MIELLGREGLLDEAFALIRGAPFK---TTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           ++    R G+LDEA  +  G   +   T   + A L+         + G+ AAE   G  
Sbjct: 319 LVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQ-------QHGEAAAEIFMGAR 371

Query: 532 PEKLSN---YVVLLN 543
                N   YVVLL+
Sbjct: 372 DSAAVNVDTYVVLLS 386


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/541 (37%), Positives = 331/541 (61%), Gaps = 7/541 (1%)

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS-GDYLEAFLLFLDLW 223
           L++ N ++ M+ + GM+ DA  LF  MP+RN+VS   ++A + ++ G   EA    +++ 
Sbjct: 107 LFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMR 166

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
            +     S TF++++ A     +++    +H+  +K+G   +VFV  +LID Y K G ++
Sbjct: 167 RDGVAANSYTFSSVLGACGTPGVLAA---MHADIIKVGLDSDVFVRSSLIDAYMKLGDLD 223

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
             +GVFDEM     V WN+IIAG+A  G    A++L+  M++SG   +  T + ++R CT
Sbjct: 224 SGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACT 283

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            +  LE  +Q HA +++  +  D++ ++AL+D Y K G + DA  +F +M  ++VISW+ 
Sbjct: 284 GMVMLEVGRQVHAHVLK--YDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWST 341

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           +I+G   +GR  EA+++F+ M   G  PN++T + VL ACS +GL E GW  F+SM +  
Sbjct: 342 MISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLF 401

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            I+P   H  CM++LLGR G LDEA   I    F+    +W  LL ACR++ N  L  +A
Sbjct: 402 GIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASYA 461

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
           A ++  +EPE     ++L NIY    +   A +  +T+R +G++  P  SWIE+ K  HV
Sbjct: 462 ATEILKLEPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVHV 521

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVA 642
           F++G+ SH  +  I ++++R++      GYVP+ + +L D+  EQ++ +L YHSEKLA+A
Sbjct: 522 FIAGELSHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKYHSEKLAIA 581

Query: 643 FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           FG +N+ +  P++I+++ RIC DCH   KL++   G+ I++RD  RFHHF+ G+CSCGDY
Sbjct: 582 FGTMNSMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSCGDY 641

Query: 703 W 703
           W
Sbjct: 642 W 642



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 157/316 (49%), Gaps = 30/316 (9%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R +EAL  F +     G    S T+ +++ AC G   +  +  + + ++  G + D+++R
Sbjct: 154 RKKEALR-FLVEMRRDGVAANSYTFSSVLGAC-GTPGV--LAAMHADIIKVGLDSDVFVR 209

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           + ++  +++ G +   R +FDEM   +LV  N IIAG   SGD + A  LF+ + E    
Sbjct: 210 SSLIDAYMKLGDLDSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFL 269

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               T  +++RA  G+ ++ VG+Q+H+  LK  +  ++ +  AL+DMY KCG + DA  +
Sbjct: 270 ANQGTLTSVLRACTGMVMLEVGRQVHAHVLK--YDRDLILHNALLDMYCKCGCLLDADAL 327

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F  M ++  + W+T+I+G A +G S EAL ++  M+  G   ++ T   ++  C+     
Sbjct: 328 FSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACS----- 382

Query: 349 EHAKQAHAGLVRHG----------FGLDIVAN--SALVDFYSKWGRIEDARHVFDKM-LC 395
                 HAGLV  G          FG+       + +VD   + G++++A     +M   
Sbjct: 383 ------HAGLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIGEMKFE 436

Query: 396 KNVISWNALIAGYGNH 411
            + + W  L+     H
Sbjct: 437 PDSVIWRTLLGACRMH 452



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 15/158 (9%)

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           +I +   L G    AL L  ++  +GV+ D  +   +I++C R  ++   +  H    RH
Sbjct: 36  SIFSRLCLDGPFTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIH----RH 91

Query: 362 ----------GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
                          +  +++LV  Y+K+G ++DA  +F  M  +NV+SW  ++A   N 
Sbjct: 92  VSLCAHGGGGATHGSLFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANA 151

Query: 412 -GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
            GR +EA+    +M  +G+  N  TF +VL AC   G+
Sbjct: 152 PGRKKEALRFLVEMRRDGVAANSYTFSSVLGACGTPGV 189


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/632 (34%), Positives = 356/632 (56%), Gaps = 24/632 (3%)

Query: 80  LKESSLPDTQMKKPSAGICSQIEKL--VLNKRYREALELFEILEFEGGFDVGSSTYDALI 137
           L+  +LPD      S      +     +L    R  L    I  F+   +    +Y  L+
Sbjct: 91  LRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLL 150

Query: 138 SACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLV 197
              +    + E +R+F  M     + D+     +L  + + G + +AR LFDEMP+RN+V
Sbjct: 151 GGLLDAGRVNEARRLFDEMP----DRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVV 206

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257
           S   +I+G   +G+   A  LF    E   +    ++  M+     +  I  G    +  
Sbjct: 207 SWTAMISGYAQNGEVNLARKLF----EVMPERNEVSWTAML-----VGYIQAGHVEDAAE 257

Query: 258 LKMGFGDNVFVSC-ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
           L     ++   +C A++  + + G ++ A+ VF++M E+    W+ +I  Y  + +  EA
Sbjct: 258 LFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEA 317

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
           L  + EM   GV+ ++ +   I+ +C  LA L++ ++ HA ++R  F +D+ A SAL+  
Sbjct: 318 LSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITM 377

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           Y K G ++ A+ VF     K+++ WN++I GY  HG GE+A+ +F  M L GM P+ +T+
Sbjct: 378 YIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITY 437

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
           +  L+ACS +G  + G EIF SM+ +  I+P A HY+CM++LLGR GL++EAF LI+  P
Sbjct: 438 IGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMP 497

Query: 497 FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
            +    +W AL+ ACR++ N E+ +FAA+KL  +EP     YV+L +IY S G+ ++A++
Sbjct: 498 VEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASK 557

Query: 557 VIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD----QSHVQTKEIYRKVDRMMLEISKHG 612
           + + +  + L   P CSWIE  K+ H+F SGD      H     I  K+D +++E    G
Sbjct: 558 MRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLME---SG 614

Query: 613 YVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           Y  +   +L D+D EQ+   L YHSE+ AVA+GL+   +  P++++++ R+C DCH+AIK
Sbjct: 615 YSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIK 674

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           LIA +T REI++RDA+RFHHFKDG CSC DYW
Sbjct: 675 LIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 154/372 (41%), Gaps = 63/372 (16%)

Query: 176 VRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFA 235
            R G +  AR  F+ MP R   S N ++AG   +     A  LF  +        SR  A
Sbjct: 28  ARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRM-------PSRDLA 80

Query: 236 TMIRASAGLELISVGKQLHSCAL-KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE 294
           +     +GL L        + AL  + F  +V    +L+  Y + G + DA  +F +M E
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
           +  V +  ++ G    G   EA  L+ EM D                             
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDR---------------------------- 172

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414
                      D+VA +A++  Y + GRI +AR +FD+M  +NV+SW A+I+GY  +G  
Sbjct: 173 -----------DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEV 221

Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474
             A +LFE M       N V++ A+L    ++G  E   E+F +M       P A   A 
Sbjct: 222 NLARKLFEVM----PERNEVSWTAMLVGYIQAGHVEDAAELFNAMPE----HPVAACNAM 273

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL--ELGKFAAEKLYGMEP 532
           M+   G+ G++D A  +      +     W+A++ A   N  L   L  F      G+ P
Sbjct: 274 MVG-FGQRGMVDAAKTVFEKM-CERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRP 331

Query: 533 EKLSNYVVLLNI 544
               NY  +++I
Sbjct: 332 ----NYPSVISI 339



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 103/247 (41%), Gaps = 61/247 (24%)

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM------ 424
           +A +   ++ G IE AR  F+ M  +   S+NAL+AGY  +   + A+ LF +M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 425 ----LLNGMR-------------------PNHVTFLAVLSACSRSGLSERGWEIFQSMS- 460
               L++G+                    P+ V+F ++L    R GL      +FQ M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 461 RDH------------------------KIKPR-AMHYACMIELLGREGLLDEAFALIRGA 495
           R+H                        ++  R  + +  M+    + G + EA AL    
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEA 554
           P +   + W A+++    NG + L    A KL+ + PE+   ++  +L  Y  +G +++A
Sbjct: 201 PKRNVVS-WTAMISGYAQNGEVNL----ARKLFEVMPERNEVSWTAMLVGYIQAGHVEDA 255

Query: 555 AEVIRTL 561
           AE+   +
Sbjct: 256 AELFNAM 262


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/601 (35%), Positives = 355/601 (59%), Gaps = 3/601 (0%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N  + ++L+L   +  +G F   + T+D  + A IGL +    K V   +L T +E D
Sbjct: 223 VENGCFEDSLQLLSRMGMDG-FMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELD 281

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
             +   +L ++ + G M DA ++F+EMP+ ++V  + +IA    +G   +A  +F+ + E
Sbjct: 282 PRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMRE 341

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
            F      T ++++   A  +   +G+QLH   +K+GF  +V+VS ALID+Y+KC  ++ 
Sbjct: 342 GFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDT 401

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A  +F E+S K  V WNT+I GY   G   +AL+++ E   + V +   TFS  +  C  
Sbjct: 402 AVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACAS 461

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           LAS+E   Q H   ++      +  +++L+D Y+K G I+ A+ VF++M   +V SWNAL
Sbjct: 462 LASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNAL 521

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I+GY  HG G +A+ +F+ M  +  +PN +TFL VLS CS +GL ++G + F+SM  DH 
Sbjct: 522 ISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHG 581

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           I+P   HY CM+ L GR G LD+A  LI G P++ +  +W A+L+A     N E  + +A
Sbjct: 582 IEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSA 641

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
           E++  + P+  + YV+L N+Y  + +    A + ++++ KG++  P  SWIE +   H F
Sbjct: 642 EEILKINPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFF 701

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAF 643
             G   H   K I   ++ + ++ ++ GYVP+   +L D+D++E+ + L  HSE+LA+A+
Sbjct: 702 SVGSSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAY 761

Query: 644 GLIN-TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           GL+   S    + I+++ RIC DCH+A+K+I+ +  R++V+RD +RFHHF  G+CSC D+
Sbjct: 762 GLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCDDH 821

Query: 703 W 703
           W
Sbjct: 822 W 822



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 159/325 (48%), Gaps = 7/325 (2%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S  Y  ++  CI        K +   +L  G   DL+  N +L  +V+ G   DA  LFD
Sbjct: 49  SHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFD 108

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
           EMPERN VS   +  G        +   L+  L  E  +     F + ++    L+   +
Sbjct: 109 EMPERNNVSYVTLTQGYACQ----DPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEI 164

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
              LHS  +K+G+  N FV  ALI+ YS CGS++ A+ VF+ +  K  V W  I++ Y  
Sbjct: 165 CWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVE 224

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +G  E++L L   M   G   +++TF   ++    L +   AK  H  +++  + LD   
Sbjct: 225 NGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRV 284

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
              L+  Y++ G + DA  VF++M   +V+ W+ +IA +  +G   +AV++F +M    +
Sbjct: 285 GVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFV 344

Query: 430 RPNHVTFLAVLSACSR---SGLSER 451
            PN  T  ++L+ C+    SGL E+
Sbjct: 345 VPNEFTLSSILNGCAIGKCSGLGEQ 369



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 7/209 (3%)

Query: 311 GYSEEALDLYYEMRDSGVK-MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           G+S +  +   +  DS V  +D   +  ++R C R      AK  H  +++ G  LD+ A
Sbjct: 27  GFSVQTAESSVQWSDSVVPCLDSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFA 86

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            + L++ Y K G  +DA ++FD+M  +N +S+  L  GY      ++ V L+ ++   G 
Sbjct: 87  TNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYA----CQDPVGLYSRLHREGH 142

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
             N   F + L        +E  W +   + +       A   A +I      G +D A 
Sbjct: 143 ELNPHVFTSFLKLFVSLDKAEICWWLHSPIVK-LGYDSNAFVGAALINAYSVCGSVDSAR 201

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           ++  G   K    +WA +++    NG  E
Sbjct: 202 SVFEGILCKDIV-VWAGIVSCYVENGCFE 229


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/607 (34%), Positives = 340/607 (56%), Gaps = 3/607 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGG-FDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           + I    L     EA  L + ++ +G        T   ++ AC+    +R +K +  Y  
Sbjct: 319 TMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSF 378

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
              F+  + + N  +L + +CG +  A ++F  + ++ + S N +I G   +GD  +A  
Sbjct: 379 RHCFQ-HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALH 437

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           L   +          T ++++ A A L+ +  GK++H   L+ G   + FV  +L+  Y 
Sbjct: 438 LLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYI 497

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
            CG    A+ +FD M +K  V WN +I+GY+ +G   E+L L+ +    G++        
Sbjct: 498 HCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVS 557

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           +   C++L++L   K+AH  +++     D     +++D Y+K G I+++R VFD +  KN
Sbjct: 558 VFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKN 617

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           V SWNA+I  +G HG G+EA+EL+E+M   G  P+  T++ +L AC  +GL E G + F+
Sbjct: 618 VASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFK 677

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
            M   + I+P+  HYAC+I++L R G LD+A  L+   P +    +W++LL +CR  G L
Sbjct: 678 EMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGAL 737

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
           E+G+  A+KL  +EP+K  NYV+L N+Y   GK      V + ++  GL+    CSWIEV
Sbjct: 738 EIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEV 797

Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHS 636
             + + F+ GD    ++ EI     R+   IS+ GY P   ++L +V E+E+  +L  HS
Sbjct: 798 GGRVYSFVVGDSLQPKSAEIRVIWRRLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHS 857

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           EKLA++FGL+ T+  T L+I ++ RIC DCHNA KLI+    REIVVRD  RFHHF+DG+
Sbjct: 858 EKLAISFGLLKTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGL 917

Query: 697 CSCGDYW 703
           CSC DYW
Sbjct: 918 CSCCDYW 924



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 199/386 (51%), Gaps = 8/386 (2%)

Query: 136 LISACIGLRSIREVKRVFSYML-STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           L+ AC   + I   +R+  ++  ST +  D  +  R++ M+  CG  +D+R +FD M  +
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQL 253
           NL+  N +++G   +G Y +   +F+DL  +      + TF ++I+A  G+  + +G+ +
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVI 168

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           H   +KMG   +VFV  AL+ MY KCG++++A  VFD M E   V WN++I  ++ +G+S
Sbjct: 169 HGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFS 228

Query: 314 EEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            ++ DL  EM  + G+  D  T   I+ +C     ++     H   V+ G   +++ N+A
Sbjct: 229 RDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNA 288

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG--MR 430
           +V  YSK G + +A+  F K   KNV+SWN +I+ +   G   EA  L ++M + G  M+
Sbjct: 289 MVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMK 348

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
            N VT L VL AC    L  R  +     S  H  +   +  A  I    + G L+ A  
Sbjct: 349 ANEVTILNVLPAC-LDKLQLRSLKELHGYSFRHCFQHVELSNA-FILAYAKCGALNSAEK 406

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGN 516
           +  G   KT  + W AL+     NG+
Sbjct: 407 VFHGIGDKTVSS-WNALIGGHAQNGD 431



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 144/535 (26%), Positives = 256/535 (47%), Gaps = 44/535 (8%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N  Y + +++F  L  +  F   + T+ ++I AC G+  +R  + +   ++  G   D++
Sbjct: 123 NGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVF 182

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD-LWEE 225
           + N ++ M+ +CG + +A ++FD MPE NLVS N +I    ++G   ++F L ++ L EE
Sbjct: 183 VGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEE 242

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                  T  T++   AG   + +G  +H  A+K+G  + V V+ A++ MYSKCG + +A
Sbjct: 243 GLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEA 302

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG--VKMDHFTFSMIIRICT 343
           Q  F + + K  V WNT+I+ ++L G   EA +L  EM+  G  +K +  T   ++  C 
Sbjct: 303 QMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACL 362

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
               L   K+ H    RH F   +  ++A +  Y+K G +  A  VF  +  K V SWNA
Sbjct: 363 DKLQLRSLKELHGYSFRHCFQ-HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNA 421

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD- 462
           LI G+  +G   +A+ L  QM  +G +P+  T  ++L AC+     + G EI   + R+ 
Sbjct: 422 LIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNG 481

Query: 463 ----------------------------HKIKPRAM-HYACMIELLGREGLLDEAFALIR 493
                                        ++K + +  +  MI    + GL  E+ AL R
Sbjct: 482 LETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFR 541

Query: 494 GAPFKTTKNMWAALLT---ACRVNGNLELGKFA-AEKLYGMEPEKLSNYVVLLNIYNSSG 549
            +  +  ++   A+++   AC     L LGK A    L  ++ E       ++++Y  SG
Sbjct: 542 KSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSG 601

Query: 550 KLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
            +KE+ +V   L+ K +      SW  +     +   G ++ ++  E  +KV +M
Sbjct: 602 CIKESRKVFDGLKDKNV-----ASWNAIIVAHGIHGHGKEA-IELYERMKKVGQM 650


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/573 (34%), Positives = 328/573 (57%), Gaps = 1/573 (0%)

Query: 132  TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            TY +++  CI L  +   +++ S ++ T F+ + Y+ + ++ M+ + G +  A  +    
Sbjct: 492  TYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 551

Query: 192  PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
              +++VS   +IAG        +A   F  + +             + A AGL+ +  G+
Sbjct: 552  AGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQ 611

Query: 252  QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            Q+H+ A   GF  ++    AL+ +YS+CG IE++   F++      + WN +++G+   G
Sbjct: 612  QIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSG 671

Query: 312  YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             +EEAL ++  M   G+  ++FTF   ++  +  A+++  KQ HA + + G+  +    +
Sbjct: 672  NNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCN 731

Query: 372  ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
            AL+  Y+K G I DA   F ++  KN +SWNA+I  Y  HG G EA++ F+QM+ + +RP
Sbjct: 732  ALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRP 791

Query: 432  NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
            NHVT + VLSACS  GL ++G   F+SM+ ++ + P+  HY C++++L R GLL  A   
Sbjct: 792  NHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEF 851

Query: 492  IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
            I+  P K    +W  LL+AC V+ N+E+G+FAA  L  +EPE  + YV+L N+Y  S K 
Sbjct: 852  IQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKW 911

Query: 552  KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
                   + ++ KG++  P  SWIEVK   H F  GDQ+H    EI+     +    S+ 
Sbjct: 912  DARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEI 971

Query: 612  GYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
            GYV +  +LL ++  EQ+  ++  HSEKLA++FGL++     P+ ++++ R+C DCH  I
Sbjct: 972  GYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWI 1031

Query: 671  KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            K ++ V+ REI+VRDA RFHHF+ G CSC DYW
Sbjct: 1032 KFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 195/390 (50%), Gaps = 10/390 (2%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           + +++SAC  + S+   +++   +L  GF  D Y+ N ++ ++   G +I A  +F  M 
Sbjct: 291 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS 350

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           +R+ V+ N +I G+   G   +A  LF  +  +  +  S T A+++ A +    +  G+Q
Sbjct: 351 QRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQ 410

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LH+   K+GF  N  +  AL+++Y+KC  IE A   F E   +  V WN ++  Y L   
Sbjct: 411 LHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDD 470

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
              +  ++ +M+   +  + +T+  I++ C RL  LE  +Q H+ +++  F L+    S 
Sbjct: 471 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSV 530

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D Y+K G+++ A  +  +   K+V+SW  +IAGY  +   ++A+  F QML  G+R +
Sbjct: 531 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSD 590

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            V     +SAC+     + G +I                 A ++ L  R G ++E++   
Sbjct: 591 EVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNA-LVTLYSRCGKIEESY--- 646

Query: 493 RGAPFKTTKN----MWAALLTACRVNGNLE 518
               F+ T+      W AL++  + +GN E
Sbjct: 647 --LAFEQTEAGDNIAWNALVSGFQQSGNNE 674



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 232/493 (47%), Gaps = 46/493 (9%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +A+ELF+ +  +G  +  S+T  +L+ AC    ++   +++ +Y    GF  +  +   +
Sbjct: 372 KAMELFKRMHLDG-LEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGAL 430

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA--GMIDSGDYLEAFLLFLDLWEEFSDC 229
           L ++ +C  +  A   F E    N+V  N+++   G++D  D   +F +F  +  E    
Sbjct: 431 LNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD--DLRNSFRIFRQMQIEEIVP 488

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              T+ ++++    L  + +G+Q+HS  +K  F  N +V   LIDMY+K G ++ A  + 
Sbjct: 489 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 548

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
              + K  V W T+IAGY  + + ++AL  + +M D G++ D    +  +  C  L +L+
Sbjct: 549 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 608

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             +Q HA     GF  D+   +ALV  YS+ G+IE++   F++    + I+WNAL++G+ 
Sbjct: 609 EGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQ 668

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI-------------- 455
             G  EEA+ +F +M   G+  N+ TF + + A S +   ++G ++              
Sbjct: 669 QSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETE 728

Query: 456 ---------------------FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
                                F  +S  +++   A+  A      G E L  ++F  +  
Sbjct: 729 VCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEAL--DSFDQMIH 786

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKL 551
           +  +        +L+AC   G ++ G    E +   YG+ P K  +YV ++++   +G L
Sbjct: 787 SNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSP-KPEHYVCVVDMLTRAGLL 845

Query: 552 KEAAEVIRTLRRK 564
             A E I+ +  K
Sbjct: 846 SRAKEFIQEMPIK 858



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 227/471 (48%), Gaps = 38/471 (8%)

Query: 125 GFDVGSSTYDALISACIGLR-SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183
           G      T   L+  C+    S+ E +++ S +L  G + +  +  ++   ++  G +  
Sbjct: 79  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A ++FDEMPER + + N +I  +       E F LF+ +  E       TF+ ++ A  G
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 198

Query: 244 LEL-ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
             +   V +Q+H+  L  G  D+  V   LID+YS+ G ++ A+ VFD +  K    W  
Sbjct: 199 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 258

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I+G + +    EA+ L+ +M   G+    + FS ++  C ++ SLE  +Q H  +++ G
Sbjct: 259 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 318

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
           F  D    +ALV  Y   G +  A H+F  M  ++ +++N LI G    G GE+A+ELF+
Sbjct: 319 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 378

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR-----DHKIK----------- 466
           +M L+G+ P+  T  +++ ACS  G   RG ++    ++     ++KI+           
Sbjct: 379 RMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCA 438

Query: 467 --PRAMHYACMIE---------LLGREGLLDE---AFALIRGAPFK---TTKNMWAALLT 509
               A+ Y    E         +L   GLLD+   +F + R    +     +  + ++L 
Sbjct: 439 DIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 498

Query: 510 ACRVNGNLELGKFAAEKLYGMEPEKLSNYV--VLLNIYNSSGKLKEAAEVI 558
            C   G+LELG+    ++     + L+ YV  VL+++Y   GKL  A +++
Sbjct: 499 TCIRLGDLELGEQIHSQIIKTNFQ-LNAYVCSVLIDMYAKLGKLDTAWDIL 548



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 3/201 (1%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL +F  +  EG  D  + T+ + + A     ++++ K+V + +  TG++ +  + N +
Sbjct: 675 EALRVFVRMNREG-IDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAL 733

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG + DA + F E+  +N VS N II      G   EA   F  +         
Sbjct: 734 ISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNH 793

Query: 232 RTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
            T   ++ A + + L+  G     S   + G          ++DM ++ G +  A+    
Sbjct: 794 VTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQ 853

Query: 291 EMSEKT-TVGWNTIIAGYALH 310
           EM  K   + W T+++   +H
Sbjct: 854 EMPIKPDALVWRTLLSACVVH 874


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/573 (37%), Positives = 343/573 (59%), Gaps = 8/573 (1%)

Query: 137  ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL 196
            +S+C GL+ +   ++V    +  G + D  + N ++ M+  CG M D  ++F+ M E + 
Sbjct: 488  LSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDE 547

Query: 197  VSCNMIIAGMIDSGDYL-EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
            VS N ++  M  S   + E   +F ++          TF  ++ A + L ++ +GKQ+H+
Sbjct: 548  VSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHA 607

Query: 256  CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYALHGYSE 314
              +K G  ++  V  ALI  Y+K G +   + +F  MS++   + WN++I+GY  +G  +
Sbjct: 608  AVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQ 667

Query: 315  EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
            EA+D  + M  SG  MD  TFS+I+  C  +A+LE   + HA  +R     D+V  SALV
Sbjct: 668  EAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVVESALV 727

Query: 375  DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
            D YSK GR++ A  +F+ M  +N  SWN++I+GY  HG G +A+E+FE+ML +   P+HV
Sbjct: 728  DMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHV 787

Query: 435  TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
            TF++VLSACS +GL ERG E F+ M  DH I P+  HY+C+I+LLGR G +D+    I+ 
Sbjct: 788  TFVSVLSACSHAGLVERGLEYFEMMP-DHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQR 846

Query: 495  APFKTTKNMWAALLTACRVN---GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
             P +    +W  +L ACR +    N++LG+ A+  L  +EP+   NYV+  N + ++G  
Sbjct: 847  MPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVLASNFHAATGMW 906

Query: 552  KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
            ++ A+    +R+   +     SW+ +    H F++GD+SH  TKEIY K++ ++  I   
Sbjct: 907  EDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRSHPNTKEIYEKLNFLIQNIRNA 966

Query: 612  GYVP-EEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
            GYVP  E  L    +E ++ +LSYHSEKLA+AF L  +S   P++I+++ R+C DCH A 
Sbjct: 967  GYVPLTEYALYDLEEENKEELLSYHSEKLAIAFVLTRSSS-GPIRIMKNLRVCGDCHIAF 1025

Query: 671  KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            + I+ +  R+I++RD+ RFHHFKDG CSCGDYW
Sbjct: 1026 RYISQMISRQIILRDSIRFHHFKDGKCSCGDYW 1058



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 180/376 (47%), Gaps = 8/376 (2%)

Query: 149 VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
           + +V  ++L +G   DLY+ + ++    R G+  +A+ +F  + ++N V+ N +I G++ 
Sbjct: 294 LDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVR 353

Query: 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA----SAGLELISVGKQLHSCALKMGFGD 264
                EA  +F+       D  + T+  ++ A    S   E + +G+ +H   L+ G  D
Sbjct: 354 QDFSEEAVKIFVGT-RNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTD 412

Query: 265 -NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
             + VS  L++MY+KCG+IE A  +F  M     + WNTII+    +G  EEA+  Y  M
Sbjct: 413 LKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLM 472

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
           R S +   +F     +  C  L  L   +Q H   V+ G  LD   ++ LV  Y + G +
Sbjct: 473 RQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAM 532

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRG-EEAVELFEQMLLNGMRPNHVTFLAVLSA 442
            D   VF+ M   + +SWN ++    +      E V++F  M+  G+ PN VTF+ +L+A
Sbjct: 533 SDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAA 592

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
            S   + E G ++  ++ +   ++   +  A +I    + G +     L      +    
Sbjct: 593 LSPLSVLELGKQVHAAVMKHGVMEDNVVDNA-LISCYAKSGDMGSCEHLFTNMSDRRDAI 651

Query: 503 MWAALLTACRVNGNLE 518
            W ++++    NGNL+
Sbjct: 652 SWNSMISGYIYNGNLQ 667



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 176/382 (46%), Gaps = 24/382 (6%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           ++  G   DL++ N ++  + +   +  A ++FDEMPERN VS   +++G +  G   EA
Sbjct: 87  LIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEEA 146

Query: 216 FLLFLDLWEEF-SDC--GSRTFATMIRA--SAGLELISVGKQLHSCALKMGFGDNVFVSC 270
           F +F  +  E  + C   S TF T++RA    G + +    Q+H    K  +  N  V  
Sbjct: 147 FRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNTTVCN 206

Query: 271 ALIDMYSKC--GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR--DS 326
           ALI MY  C  G    AQ VFD    +  + WN +++ YA  G       L+ +M+  DS
Sbjct: 207 ALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDS 266

Query: 327 GVKM---DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
            +++   +H   S+I        S     Q    +++ G   D+   SALV  +++ G  
Sbjct: 267 RIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLT 326

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           ++A+ +F  +  KN ++ N LI G       EEAV++F     N +  N  T++ +LSA 
Sbjct: 327 DEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGT-RNTVDVNADTYVVLLSAL 385

Query: 444 SRSGLSERGWEIFQ----SMSRDHKIKPRAMHYACMIELLGREGLLDEA---FALIRGAP 496
           +   +SE G  I +     M R      +      ++ +  + G ++ A   F L+    
Sbjct: 386 AEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEA-- 443

Query: 497 FKTTKNMWAALLTACRVNGNLE 518
             T +  W  +++A   NGN E
Sbjct: 444 --TDRISWNTIISALDQNGNCE 463



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 85/366 (23%), Positives = 152/366 (41%), Gaps = 60/366 (16%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           + LH   +K G   ++F+   L++ Y+K   +  A  VFDEM E+  V W  +++GY LH
Sbjct: 81  ENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLH 140

Query: 311 GYSEEALDLYYEMR---DSGVKMDHFTFSMIIRICTRLAS--LEHAKQAHAGLVRHGFGL 365
           G +EEA  ++  M     +G +   FTF  ++R C       L  A Q H  + +  +  
Sbjct: 141 GIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYAS 200

Query: 366 DIVANSALVDFYSKW--GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
           +    +AL+  Y     G    A+ VFD    +++I+WNAL++ Y   G       LF+ 
Sbjct: 201 NTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKD 260

Query: 424 MLLNG----MRPNHVTF------------------------------------LAVLSAC 443
           M        +RP   TF                                     A++SA 
Sbjct: 261 MQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAF 320

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA--PFKTTK 501
           +R GL++   +IF S+ + + +         +I  L R+   +EA  +  G         
Sbjct: 321 ARHGLTDEAKDIFLSLKQKNAVTLNG-----LIVGLVRQDFSEEAVKIFVGTRNTVDVNA 375

Query: 502 NMWAALLTACR----VNGNLELGKFAAEKLY--GMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           + +  LL+A          L +G+     +   G+   K++    L+N+Y   G ++ A+
Sbjct: 376 DTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESAS 435

Query: 556 EVIRTL 561
           ++ + +
Sbjct: 436 KIFQLM 441



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 92/209 (44%), Gaps = 2/209 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   + N   +EA++   ++   G   +   T+  +++AC  + ++     + ++ + 
Sbjct: 655 SMISGYIYNGNLQEAMDCVWLMIHSGQI-MDCCTFSIILNACASVAALERGMELHAFGIR 713

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           +  E D+ + + ++ M+ +CG +  A +LF+ M +RN  S N +I+G    G   +A  +
Sbjct: 714 SHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEI 773

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F ++          TF +++ A +   L+  G +        G    +     +ID+  +
Sbjct: 774 FEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPDHGILPQIEHYSCVIDLLGR 833

Query: 279 CGSIEDAQGVFDEMS-EKTTVGWNTIIAG 306
            G I+  +     M  E   + W T++  
Sbjct: 834 AGKIDKIKEYIQRMPIEPNALIWRTVLVA 862


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/612 (33%), Positives = 361/612 (58%), Gaps = 15/612 (2%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N     AL+LF I   E G    + T   +++AC  L+SI   K+V +Y++    + D
Sbjct: 141 VQNSHPLLALQLF-IKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFD 199

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
             + N +   + +   +  A + F  + E++++S   +I+   D+G    +   F+D+  
Sbjct: 200 TSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLS 259

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
           +       T  +++ A   +  + +G Q+HS ++K+G+G ++ +  +++ +Y KCG + +
Sbjct: 260 DGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIE 319

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYA-----------LHGYSEEALDLYYEMRDSGVKMDHF 333
           AQ +F+ M     V WN +IAG+A            H     AL ++ ++  SG+K D F
Sbjct: 320 AQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLF 379

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           TFS ++ +C+ L +LE  +Q H  +++ G   D+V  +ALV  Y+K G I+ A   F +M
Sbjct: 380 TFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEM 439

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             + +ISW ++I G+  HG  ++A++LFE M L G++PN VTF+ VLSACS +GL++   
Sbjct: 440 PSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEAL 499

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
             F+ M + + IKP   H+AC+I++  R G ++EAF ++    F+  + +W+ L+  CR 
Sbjct: 500 YYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRS 559

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACS 573
           +G  +LG +AAE+L  ++P+ +  YV LLN++ S+G+ K+ ++V + ++ + +  L   S
Sbjct: 560 HGKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWS 619

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLS 633
           WI +K++ + F   D+SH Q+ E+Y+ ++ ++ E+   GY P E   + + +E E+RVLS
Sbjct: 620 WISIKEKVYSFKPNDKSHCQSLEMYKLLETVLNEVKALGYEPIEDVEVIEKEENEERVLS 679

Query: 634 ---YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFH 690
               HSEKLA+AFGL+N    TP+++V+S  +C DCHN I+ I+++ GREIV+RD+ + H
Sbjct: 680 STVLHSEKLAIAFGLLNLPTATPIRVVKSITMCRDCHNFIRFISLLKGREIVIRDSKQLH 739

Query: 691 HFKDGMCSCGDY 702
            F +G CSCG Y
Sbjct: 740 KFLNGYCSCGGY 751



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 229/453 (50%), Gaps = 16/453 (3%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G  + SS Y  L+  CI      E + +  +++ TGF  DL++   ++ ++ +CG+M  A
Sbjct: 59  GTRIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESA 118

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
            ++FD +P RN+ +   ++ G + +   L A  LF+ + E  +   + T   ++ A + L
Sbjct: 119 HKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSL 178

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
           + I  GKQ+H+  +K     +  +  +L   YSK   +E A   F  + EK  + W ++I
Sbjct: 179 QSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVI 238

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           +    +G +  +L  + +M   G+K + +T + ++  C  + +L+   Q H+  ++ G+G
Sbjct: 239 SSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYG 298

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN-----------HGR 413
             I+  ++++  Y K G + +A+ +F+ M   N+++WNA+IAG+             H  
Sbjct: 299 SSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKS 358

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
           G  A+ +F+++  +GM+P+  TF +VLS CS     E+G +I   + +   +    +  A
Sbjct: 359 GSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTA 418

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG--NLELGKFAAEKLYGME 531
            ++ +  + G +D+A       P +T  + W +++T    +G     L  F   +L G++
Sbjct: 419 -LVSMYNKCGSIDKASKAFLEMPSRTMIS-WTSMITGFARHGLSQQALQLFEDMRLVGIK 476

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           P +++ +V +L+  + +G   EA      ++++
Sbjct: 477 PNQVT-FVGVLSACSHAGLADEALYYFELMQKQ 508


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/583 (35%), Positives = 342/583 (58%), Gaps = 10/583 (1%)

Query: 130 SSTYDALISACIGL-----RSIREVKRVFSYMLSTGF---EPDLYMRNRVLLMHVRCGMM 181
           S+T +  ++ CI L      S  ++K++ ++ +  G     PD+  ++ +  +      M
Sbjct: 10  STTPENPLTKCISLLQFCASSKHKLKQIHAFSIRHGVSLNNPDM-GKHLIFTIVSLSAPM 68

Query: 182 IDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRAS 241
             A  +F  +   N+ + N II G  +S +   AFL +  +     +  + T+  +++A 
Sbjct: 69  SYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAI 128

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
           +    +  G+ +HS  ++ GF   VFV  +L+ +Y+ CG  E A  VF+ M E+  V WN
Sbjct: 129 SKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWN 188

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           ++I G+AL+G   EAL L+ EM   GV+ D FT   ++     L +LE  ++ H  L++ 
Sbjct: 189 SMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKV 248

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           G   +    ++L+D Y+K G I +A+ VF +M  +N +SW +LI G   +G GEEA+ELF
Sbjct: 249 GLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELF 308

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
           ++M   G+ P+ +TF+ VL ACS  G+ + G+E F+ M  +  I PR  HY CM++LL R
Sbjct: 309 KEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSR 368

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
            GL+ +A+  I+  P +    +W  LL AC ++G+L LG+ A   L  +EP+   +YV+L
Sbjct: 369 AGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLL 428

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV 601
            N+Y S  +  +   + R++ + G++  P  S +E+  + + F  GD+SH Q++++Y  +
Sbjct: 429 SNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALL 488

Query: 602 DRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSH 660
           +++   +   GYVP    +L D++E+E ++ LSYHSEK+A+AF L+NT   TP++++++ 
Sbjct: 489 EKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMKNL 548

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           R+C DCH AIKLIA +  REIV+RD SRFHHF+ G CSC DYW
Sbjct: 549 RVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 103/220 (46%), Gaps = 11/220 (5%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEG----GFDVGSSTYDALISACIGLRSIREVKRVFS 154
           S I    LN R  EAL LF  +  EG    GF V S     L+SA   L ++   +RV  
Sbjct: 189 SMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVS-----LLSASAELGALELGRRVHV 243

Query: 155 YMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLE 214
           Y+L  G   + ++ N +L ++ +CG + +A+R+F EM ERN VS   +I G+  +G   E
Sbjct: 244 YLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEE 303

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALI 273
           A  LF ++  +       TF  ++ A +   ++  G +       + G    +     ++
Sbjct: 304 ALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMV 363

Query: 274 DMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGY 312
           D+ S+ G ++ A      M  +   V W T++    +HG+
Sbjct: 364 DLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGH 403


>gi|302808794|ref|XP_002986091.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
 gi|300146239|gb|EFJ12910.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
          Length = 604

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/584 (36%), Positives = 337/584 (57%), Gaps = 11/584 (1%)

Query: 126 FDVGS---STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
            D GS   + Y  L+ AC   +++   +R+ + +++TG +  +++ N +L+M+ +CG M 
Sbjct: 26  LDQGSREVTEYLDLLLACGRSKNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGME 85

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
           D  R F  M  RN+VS N +I+    +    +A ++FL +  +       TF +++ A A
Sbjct: 86  DLSRAFSGMKRRNIVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAFA 145

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
           G EL    K +H  AL++GFG +  V+ AL++MYSK GSI+ A+ VFDE++ K  V W+ 
Sbjct: 146 GPELHRWAKLVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSN 205

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +IA YA  G+  EAL++++ M   G++ +  TF  ++  C  +A +  A+  H  ++  G
Sbjct: 206 MIAAYAQTGHGTEALEMFHRMDAEGIQANVITFVTVVHACVLVARITDARTIHCRIIEAG 265

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
              + V  +AL++ Y K G + +A+ +FDK+  ++V+ W+A++  Y  HG    A++LF 
Sbjct: 266 LESNTVLGTALLNMYGKCGGLAEAKKIFDKLAERDVVVWSAILEAYARHGHPRVALKLFT 325

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
            M   G+RPN VTF+ VL AC   G    G   F S+ RDH+++P A H  CM+++LGR 
Sbjct: 326 LMQQEGVRPNDVTFVGVLEACCHGGFVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGRA 385

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
           G L+EA + I   P K     W+  L +CR  G+LE GK AAEK++   P   + Y+ L 
Sbjct: 386 GKLEEAESFIARMPVKEEAITWSIFLGSCRSYGDLERGKRAAEKVFEFLPHCRAGYLTLA 445

Query: 543 NIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVD 602
           ++Y  +G  +EA  V R +  +  +  P  S I V+ + H F    Q H Q KEIY  +D
Sbjct: 446 SMYTDAGMPEEAEAVARLMESRCPKKEPGSSKIVVRGRVHEFCVRSQWHPQAKEIYSYLD 505

Query: 603 RMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDW--TPLQIVQSH 660
            +     + GYVP+ + LL    E++      HSE+LA+AFG ++      +P+ I+++ 
Sbjct: 506 ELHARALELGYVPDTRPLLLGSVERK-----LHSERLALAFGAMSVPGKRNSPIHIIKNL 560

Query: 661 RICCDCHNAIKLIA-MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           R+C DCH   K ++  + GREI+VRD SRFH FKDG+CSCGDYW
Sbjct: 561 RVCRDCHEFTKFVSRTMEGREIIVRDTSRFHLFKDGVCSCGDYW 604



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 175/374 (46%), Gaps = 13/374 (3%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I     N R  +A+ +F  +  +G       T+ ++++A  G    R  K V    L  G
Sbjct: 106 ISAYAQNDRSSDAIVIFLRMLLDG-IQPSYVTFTSVLNAFAGPELHRWAKLVHDLALEVG 164

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F     +   +L M+ + G +  AR++FDE+  +++VS + +IA    +G   EA  +F 
Sbjct: 165 FGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAAYAQTGHGTEALEMFH 224

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +  E       TF T++ A   +  I+  + +H   ++ G   N  +  AL++MY KCG
Sbjct: 225 RMDAEGIQANVITFVTVVHACVLVARITDARTIHCRIIEAGLESNTVLGTALLNMYGKCG 284

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            + +A+ +FD+++E+  V W+ I+  YA HG+   AL L+  M+  GV+ +  TF  ++ 
Sbjct: 285 GLAEAKKIFDKLAERDVVVWSAILEAYARHGHPRVALKLFTLMQQEGVRPNDVTFVGVLE 344

Query: 341 ICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NV 398
            C     +   +   A LVR H           ++D   + G++E+A     +M  K   
Sbjct: 345 ACCHGGFVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGRAGKLEEAESFIARMPVKEEA 404

Query: 399 ISWNALIA---GYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWE 454
           I+W+  +     YG+  RG+ A E   + L     P+    +L + S  + +G+ E    
Sbjct: 405 ITWSIFLGSCRSYGDLERGKRAAEKVFEFL-----PHCRAGYLTLASMYTDAGMPEEAEA 459

Query: 455 IFQSM-SRDHKIKP 467
           + + M SR  K +P
Sbjct: 460 VARLMESRCPKKEP 473


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/608 (35%), Positives = 346/608 (56%), Gaps = 8/608 (1%)

Query: 99  SQIEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           S +   V N  Y  ALEL  E+L+     +    T+   +SAC  L ++   K V ++++
Sbjct: 332 SMMASHVDNGNYPRALELLIEMLQTRKATNY--VTFTTALSACYNLETL---KIVHAFVI 386

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
             G   +L + N ++ M+ + G M  A+R+   MP+R+ V+ N +I G  D+ +   A  
Sbjct: 387 LLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAAIE 446

Query: 218 LFLDLWEEFSDCGSRTFATMIRAS-AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276
            F  L EE       T   ++ A  +  +L+  G  +H+  +  GF    FV  +LI MY
Sbjct: 447 AFNLLREEGVPVNYITIVNLLSAFLSPDDLLDHGMPIHAHIVVAGFELETFVQSSLITMY 506

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
           ++CG +  +  +FD ++ K +  WN I++  A +G  EEAL L  +MR+ G+ +D F+FS
Sbjct: 507 AQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIHLDQFSFS 566

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
           +   I   L  L+  +Q H+ +++HGF  +    +A +D Y K G I+D   +  +   +
Sbjct: 567 VAHAIIGNLTLLDEGQQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRSR 626

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           +  SWN LI+    HG  ++A E F +ML  G+RP+HVTF+++LSACS  GL + G   F
Sbjct: 627 SQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYF 686

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
            SMS    +     H  C+I+LLGR G L EA   I   P   T  +W +LL AC+++GN
Sbjct: 687 SSMSTKFGVPTGIEHCVCIIDLLGRAGKLTEAENFINKMPVPPTDLVWRSLLAACKIHGN 746

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
           LEL + AA++L+ ++    S YV+  N+  S+ + ++   V + +    ++  PACSW++
Sbjct: 747 LELARKAADRLFELDSSDDSAYVLYSNVCASTRRWRDVENVRKQMESHNIKKKPACSWVK 806

Query: 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYH 635
           +K Q   F  GDQ H Q  EIY K++ +   I + GY+P+    L D D EQ++  L  H
Sbjct: 807 LKNQVTTFGMGDQYHPQNAEIYAKLEELKKIIREAGYMPDTSYSLQDTDEEQKEHNLWNH 866

Query: 636 SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
           SE++A+AFGLIN+S+ +PL+I ++ R+C DCH+  K+++ + GR+I++RDA RFHHF  G
Sbjct: 867 SERIALAFGLINSSEGSPLRIFKNLRVCGDCHSVFKMVSQIIGRKIILRDAYRFHHFSSG 926

Query: 696 MCSCGDYW 703
            CSC DYW
Sbjct: 927 KCSCSDYW 934



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 243/494 (49%), Gaps = 17/494 (3%)

Query: 78  EELKESSLPDTQMK-KPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDAL 136
           + ++E+S     MK + +    S I   V N    ++LE F  + +         T  AL
Sbjct: 209 DSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHA-KTDYITISAL 267

Query: 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL 196
           +  C   +++R  + +   ++ +G E ++ + N +L M+ + G   DA  +F +M ER+L
Sbjct: 268 LPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDL 327

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256
           +S N ++A  +D+G+Y  A  L +++ +        TF T + A   LE + +   +H+ 
Sbjct: 328 ISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNLETLKI---VHAF 384

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
            + +G   N+ +  AL+ MY K GS+  AQ V   M ++  V WN +I G+A +     A
Sbjct: 385 VILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPNAA 444

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLAS----LEHAKQAHAGLVRHGFGLDIVANSA 372
           ++ +  +R+ GV +++ T   I+ + +   S    L+H    HA +V  GF L+    S+
Sbjct: 445 IEAFNLLREEGVPVNYIT---IVNLLSAFLSPDDLLDHGMPIHAHIVVAGFELETFVQSS 501

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+  Y++ G +  + ++FD +  KN  +WNA+++   ++G GEEA++L  +M  +G+  +
Sbjct: 502 LITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLIIKMRNDGIHLD 561

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
             +F    +      L + G ++  S+   H  +         +++ G+ G +D+ F ++
Sbjct: 562 QFSFSVAHAIIGNLTLLDEGQQL-HSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRIL 620

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL--YGMEPEKLSNYVVLLNIYNSSGK 550
              P   ++  W  L++A   +G  +  + A  ++   G+ P+ ++ +V LL+  +  G 
Sbjct: 621 P-QPRSRSQRSWNILISALARHGFFQQAREAFHEMLDLGLRPDHVT-FVSLLSACSHGGL 678

Query: 551 LKEAAEVIRTLRRK 564
           + E      ++  K
Sbjct: 679 VDEGLAYFSSMSTK 692



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 177/335 (52%), Gaps = 2/335 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIRE-VKRVFSYMLSTGFEPDLYMR 168
           Y++A++ F  +  E G    S    +L++AC     + E   +V ++++  G   D+++ 
Sbjct: 39  YQKAMQFFCHM-LEHGVRPSSYVAASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVG 97

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
             +L  +   G + +   +F E+ E N+VS   ++ G   +G   E   ++  L  +   
Sbjct: 98  TSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVY 157

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
           C     AT+IR+   L    +G Q+    +K G    V V+ +LI M+  C SIE+A  V
Sbjct: 158 CNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCV 217

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD+M E+ T+ WN+II     +G+ E++L+ + +MR +  K D+ T S ++ +C    +L
Sbjct: 218 FDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNL 277

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
              +  H  +V+ G   ++   ++L+  YS+ G+ EDA  VF KM  +++ISWN+++A +
Sbjct: 278 RWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASH 337

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
            ++G    A+EL  +ML      N+VTF   LSAC
Sbjct: 338 VDNGNYPRALELLIEMLQTRKATNYVTFTTALSAC 372



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 150/292 (51%), Gaps = 3/292 (1%)

Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG 210
           +V   ++ +G +  + + N ++ M   C  + +A  +FD+M ER+ +S N II   + +G
Sbjct: 181 QVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNG 240

Query: 211 DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC 270
              ++   F  +    +     T + ++      + +  G+ LH   +K G   NV V  
Sbjct: 241 HCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCN 300

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
           +L+ MYS+ G  EDA+ VF +M E+  + WN+++A +  +G    AL+L  EM  +    
Sbjct: 301 SLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKAT 360

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
           ++ TF+  +  C  L +L   K  HA ++  G   +++  +ALV  Y K+G +  A+ V 
Sbjct: 361 NYVTFTTALSACYNLETL---KIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVC 417

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
             M  ++ ++WNALI G+ ++     A+E F  +   G+  N++T + +LSA
Sbjct: 418 KIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSA 469



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 136/271 (50%), Gaps = 1/271 (0%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+ + G +  A+ +FD+MPERN  S N +++G +  G Y +A   F  + E      S  
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 234 FATMIRASAGLELISVGK-QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
            A+++ A      ++ G  Q+H+  +K G   +VFV  +L+  Y   G + +   VF E+
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            E   V W +++ GYA +G  +E + +Y  +R  GV  +    + +IR C  L       
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGY 180

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           Q    +++ G    +   ++L+  +     IE+A  VFD M  ++ ISWN++I    ++G
Sbjct: 181 QVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNG 240

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
             E+++E F QM     + +++T  A+L  C
Sbjct: 241 HCEKSLEYFSQMRYTHAKTDYITISALLPVC 271



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 125/245 (51%), Gaps = 3/245 (1%)

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MYSK GSIE AQ VFD+M E+    WN +++G+   G+ ++A+  +  M + GV+   + 
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 335 FSMIIRICTRLASL-EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
            + ++  C R   + E A Q HA +++ G   D+   ++L+ FY  +G + +   VF ++
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
              N++SW +L+ GY  +G  +E + ++ ++  +G+  N      V+ +C        G+
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGY 180

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           ++  S+ +   +         +I + G    ++EA  +      + T + W +++TA   
Sbjct: 181 QVLGSVIKS-GLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTIS-WNSIITASVH 238

Query: 514 NGNLE 518
           NG+ E
Sbjct: 239 NGHCE 243


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/574 (36%), Positives = 328/574 (57%), Gaps = 33/574 (5%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           EP +   N ++  +++ GM+ +A+ LFD+MP RN +S   +IAG   +G   EA  L  +
Sbjct: 350 EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQE 409

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           L          +  ++  A + +  +  G Q+HS A+K+G   N F   ALI MY KC +
Sbjct: 410 LHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRN 469

Query: 282 IEDAQGVFDEMSEKTTVGWN-------------------------------TIIAGYALH 310
           +E A+ VF  M  K  V WN                               TII+ YA  
Sbjct: 470 MEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHA 529

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
             S EA+  +  M       +    ++++ +C  L + +  +Q H   ++ G   +++  
Sbjct: 530 EQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVA 589

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           +AL+  Y K G   D+R +FD M  +++ +WN +I GY  HG G EA+++++ M   G+ 
Sbjct: 590 NALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVL 648

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           PN VTF+ +L+ACS +GL + GW+ F+SMS+D+ + P   HYACM++LLGR G +  A  
Sbjct: 649 PNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQ 708

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
            I   P +    +W+ALL AC+++ N E+GK AAEKL+ +EP    NYV+L NIY+S G 
Sbjct: 709 FIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGM 768

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
             E AEV + ++++G+   P CSW ++K + H F++GD+ H Q +EI   ++ +   +  
Sbjct: 769 WGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKA 828

Query: 611 HGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
            GYVP+ + +L D+D EQ++  L YHSEKLAVA+ L+ T    P+QI+++ RIC DCH  
Sbjct: 829 TGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTF 888

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           IK ++ VT R+I +RD +RFHHF++G CSC D+W
Sbjct: 889 IKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 172/335 (51%), Gaps = 13/335 (3%)

Query: 122 FEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMM 181
           F+G  +  +  ++A+IS  +    I   +R+F  M S     D+   N +L  +     M
Sbjct: 119 FDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSR----DVSSWNSMLTGYCHSLQM 174

Query: 182 IDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRAS 241
           +DAR LF++MPERNLVS  ++I+G     ++ +A+ +F  +  E        FA+ + A 
Sbjct: 175 VDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAV 234

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED-AQGVFDEMSEKTTVGW 300
            GL  + V + L   ALK GF  +V +  A++++YS+  S+ D A   F+ M E+    W
Sbjct: 235 KGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTW 294

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           +T+IA  +  G  + A+ +Y   RD  VK    + +    + T LA       A   L  
Sbjct: 295 STMIAALSHGGRIDAAIAVYE--RDP-VK----SIACRTALITGLAQCGRIDDARI-LFE 346

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
                 +V+ +AL+  Y + G + +A+ +FDKM  +N ISW  +IAGY  +GR EEA+ L
Sbjct: 347 QIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGL 406

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
            +++  +GM P+  +  ++  ACS     E G ++
Sbjct: 407 LQELHRSGMLPSLSSLTSIFFACSNIVALETGTQV 441



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 169/386 (43%), Gaps = 44/386 (11%)

Query: 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
           R G + +AR +FD MP R++++ N +I+    +G    A     DL++  S    RT A 
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAA----RDLYDAISGGNMRTGAI 101

Query: 237 MIRASAGLELISVGKQLHSCALKMG-FGDNVFVSC------------------------- 270
           ++     L  +   +++    L+      N  +SC                         
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSW 161

Query: 271 -ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            +++  Y     + DA+ +F++M E+  V W  +I+GY       +A D++ +M   G+ 
Sbjct: 162 NSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLL 221

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED-ARH 388
            D   F+  +     L +L+  +      ++ GF  D+V  +A+++ YS+   + D A  
Sbjct: 222 PDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIK 281

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
            F+ M+ +N  +W+ +IA   + GR + A+ ++E+  +  +        A+++  ++ G 
Sbjct: 282 FFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSI----ACRTALITGLAQCGR 337

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
            +    +F+ +      +P  + +  +I    + G+++EA  L    PF+ T + WA ++
Sbjct: 338 IDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTIS-WAGMI 391

Query: 509 TACRVNGNLE--LGKFAAEKLYGMEP 532
                NG  E  LG        GM P
Sbjct: 392 AGYAQNGRSEEALGLLQELHRSGMLP 417



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 18/211 (8%)

Query: 359 VRHGFG-LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           VRH  G L++   SA +    + GR+ +AR VFD M  +++I+WN++I+ Y ++G  + A
Sbjct: 25  VRHAHGELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAA 84

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
            +L++ +    MR   +    +LS   R G       +F  M   + +   AM  +C ++
Sbjct: 85  RDLYDAISGGNMRTGAI----LLSGYGRLGRVLEARRVFDGMLERNTVAWNAM-ISCYVQ 139

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTA-CRVNGNLELGKFAAEKLYGMEPEK-L 535
                G +  A  L    P +   + W ++LT  C       L    A  L+   PE+ L
Sbjct: 140 ----NGDITMARRLFDAMPSRDVSS-WNSMLTGYCH-----SLQMVDARNLFEKMPERNL 189

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
            ++ V+++ Y       +A ++   + R+GL
Sbjct: 190 VSWTVMISGYGRIENHGKAWDIFCKMHREGL 220


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 204/574 (35%), Positives = 334/574 (58%), Gaps = 2/574 (0%)

Query: 132  TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            T+ + ++AC     + E K V + ++  GF   L + N ++ M+ + GMM++A+++   M
Sbjct: 1151 TFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTM 1210

Query: 192  PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA-SAGLELISVG 250
            P+ + V+ N +I G  ++ +  EA   +  + E+       T  +++ A SA  +L+  G
Sbjct: 1211 PQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHG 1270

Query: 251  KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
              +H+  +  GF  + +V  +LI MY+KCG +  +  +FD +  K+ + WN ++A  A H
Sbjct: 1271 MPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHH 1330

Query: 311  GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
            G  EEAL ++ EMR+ GV +D F+FS  +     LA LE  +Q H  +++ GF  D+   
Sbjct: 1331 GCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVT 1390

Query: 371  SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
            +A +D Y K G + D   +  + + ++ +SWN LI+ +  HG  ++A E F +ML  G +
Sbjct: 1391 NAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPK 1450

Query: 431  PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
            P+HVTF+++LSAC+  GL + G   + SM+R+  + P   H  C+I+LLGR G L  A  
Sbjct: 1451 PDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEG 1510

Query: 491  LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
             I+  P       W +LL ACR++GNLEL +  AE L  ++P   S YV+  N+  +SGK
Sbjct: 1511 FIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGK 1570

Query: 551  LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
             ++   + + +    ++  PACSW+++K + H F  G++ H Q   I  K+  +M    +
Sbjct: 1571 WEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKE 1630

Query: 611  HGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
             GYVP+    L D+D EQ++  L  HSE+LA+AFGLINT + + L+I ++ R+C DCH+ 
Sbjct: 1631 AGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSV 1690

Query: 670  IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             K ++ + GR+IV+RD  RFHHF  G CSCGDYW
Sbjct: 1691 YKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 169/477 (35%), Positives = 263/477 (55%), Gaps = 6/477 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N R+ +A  LF  +    G      TY + + AC  LR +    +V   +    F  +L+
Sbjct: 109 NGRFEKAFVLFSDMR-HCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLF 167

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE- 225
           +++ ++  H +CG M DA  LF  M ER++VS N +I G    G   ++F +F  +    
Sbjct: 168 VKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGG 227

Query: 226 -FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
              DC   T  +++RASA    + +  Q+H    ++G+G    V+  LI+ Y+K GS+  
Sbjct: 228 LVPDC--YTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRS 285

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHG-YSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
           A+ +   M +K       +I GYA  G YS +ALDL+ EM    + MD      ++ IC 
Sbjct: 286 AKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICA 345

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            LAS     Q HA  +++    D+   +AL+D Y+K G IEDA+  FD+M  KNVISW +
Sbjct: 346 NLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTS 405

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           LI+GY  HG G  AV L+++M   G +PN VTFL++L ACS +GL+  G E F +M   +
Sbjct: 406 LISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKY 465

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            IKPRA HY+CM++L  R+GLL+EA+ L+     K   ++W A+L A  + G + LGK A
Sbjct: 466 NIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEA 525

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
           A  L+ M+PE   NYVVL +IY+++G   +A ++ + +  +  +     S+ +  K+
Sbjct: 526 ASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQATKK 582



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 225/439 (51%), Gaps = 10/439 (2%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           S Y  ++  CI  ++ ++   + +++++ GF  DL++  ++++ +V+ G +I AR +FD 
Sbjct: 31  SLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDG 90

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           MPER++VS   +++G   +G + +AF+LF D+          T+ + +RA   L  + +G
Sbjct: 91  MPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMG 150

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
            Q+  C  K  F +N+FV  AL+D +SKCG +EDA  +F  M E+  V WN +I GYA+ 
Sbjct: 151 IQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQ 210

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G+++++  ++  M   G+  D +T   ++R       L  A Q H  + + G+G   +  
Sbjct: 211 GFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVT 270

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG-RGEEAVELFEQMLLNGM 429
             L++ Y+K G +  A+ +   ML K++ S  ALI GY + G    +A++LF++M    +
Sbjct: 271 GLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNI 330

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
             + V   ++L+ C+       G +I     +       AM  A +I++  + G +++A 
Sbjct: 331 GMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNA-LIDMYAKSGEIEDA- 388

Query: 490 ALIRGAPFKTTKNM--WAALLT--ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
              R       KN+  W +L++  A    G++ +  +   +  G +P  ++ ++ LL   
Sbjct: 389 --KRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVT-FLSLLFAC 445

Query: 546 NSSGKLKEAAEVIRTLRRK 564
           + +G   E  E    +  K
Sbjct: 446 SHTGLTAEGCECFNNMVNK 464



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 188/343 (54%), Gaps = 14/343 (4%)

Query: 110  YREALELFEILEFEG----GFDVGSSTYDALISACIGLRS---IREVKRVFSYMLSTGFE 162
            Y EA+ LF  +   G    GF V S     LI+AC   RS     E  +V  +++ TG  
Sbjct: 826  YEEAVGLFCQMWGLGVEPNGFMVAS-----LITACS--RSGYMADEGFQVHGFVVKTGIL 878

Query: 163  PDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL 222
             D+Y+   ++  +   G++ +A++LF+EMP+ N+VS   ++ G  DSG+  E   ++  +
Sbjct: 879  GDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRM 938

Query: 223  WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
             +E       TFAT+  +   LE   +G Q+    ++ GF D+V V+ +LI M+S   S+
Sbjct: 939  RQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSV 998

Query: 283  EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
            E+A  VFD M+E   + WN +I+ YA HG   E+L  ++ MR    + +  T S ++ +C
Sbjct: 999  EEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVC 1058

Query: 343  TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
            + + +L+  +  H  +V+ G   ++   + L+  YS+ GR EDA  VF  M  +++ISWN
Sbjct: 1059 SSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWN 1118

Query: 403  ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
            +++A Y   G+  + +++  ++L  G   NHVTF + L+ACS 
Sbjct: 1119 SMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSN 1161



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 215/452 (47%), Gaps = 22/452 (4%)

Query: 112  EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
            E L +++ +  EG      +T+  + S+C  L       +V  +++  GFE  + + N +
Sbjct: 930  EVLNVYQRMRQEG-VSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSL 988

Query: 172  LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
            + M      + +A  +FD M E +++S N +I+     G   E+   F  +    ++  S
Sbjct: 989  ISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 1048

Query: 232  RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
             T ++++   + ++ +  G+ +H   +K+G   NV +   L+ +YS+ G  EDA+ VF  
Sbjct: 1049 TTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQA 1108

Query: 292  MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
            M+E+  + WN+++A Y   G   + L +  E+   G  M+H TF+  +  C+    L  +
Sbjct: 1109 MTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIES 1168

Query: 352  KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
            K  HA ++  GF   ++  +ALV  Y K G + +A+ V   M   + ++WNALI G+  +
Sbjct: 1169 KIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAEN 1228

Query: 412  GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS------RSGLSERGWEIFQSMSRDHKI 465
                EAV+ ++ +   G+  N++T ++VL ACS      + G+      +      D  +
Sbjct: 1229 EEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYV 1288

Query: 466  KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
            K        +I +  + G L+ +  +  G   K+    W A++ A   +G  E     A 
Sbjct: 1289 KNS------LITMYAKCGDLNSSNYIFDGLGNKSPIT-WNAMVAANAHHGCGE----EAL 1337

Query: 526  KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
            K++G    ++ N  V L+ ++ SG L   A +
Sbjct: 1338 KIFG----EMRNVGVNLDQFSFSGGLAATANL 1365



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 136/261 (52%), Gaps = 1/261 (0%)

Query: 165  LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
            ++  N ++ M+ + G +  AR +FDEM  RN  S + +++G +  G Y EA  LF  +W 
Sbjct: 779  IFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWG 838

Query: 225  EFSDCGSRTFATMIRA-SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
               +      A++I A S    +   G Q+H   +K G   +V+V  AL+  Y   G + 
Sbjct: 839  LGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVY 898

Query: 284  DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
            +AQ +F+EM +   V W +++ GY+  G   E L++Y  MR  GV  +  TF+ +   C 
Sbjct: 899  NAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCG 958

Query: 344  RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
             L       Q    ++++GF   +   ++L+  +S +  +E+A +VFD M   ++ISWNA
Sbjct: 959  LLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNA 1018

Query: 404  LIAGYGNHGRGEEAVELFEQM 424
            +I+ Y +HG   E++  F  M
Sbjct: 1019 MISAYAHHGLCRESLRCFHWM 1039



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 125/238 (52%), Gaps = 9/238 (3%)

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS---VGKQLHSCALKMGFGDNV 266
           GD  + FL      ++ +D G R    +     G   I+    GK LH+  +       +
Sbjct: 725 GDIAKVFL-----QQQHTDYGIRCLNAVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGI 779

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
           F +  LI+MYSK G+IE A+ VFDEM  +    W+T+++GY   G  EEA+ L+ +M   
Sbjct: 780 FQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGL 839

Query: 327 GVKMDHFTFSMIIRICTRLASL-EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
           GV+ + F  + +I  C+R   + +   Q H  +V+ G   D+   +ALV FY   G + +
Sbjct: 840 GVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYN 899

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           A+ +F++M   NV+SW +L+ GY + G   E + ++++M   G+  N  TF  V S+C
Sbjct: 900 AQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC 957



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 75/134 (55%), Gaps = 3/134 (2%)

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G   EAL L   +  +  ++D   +  I+++C    + +     H  L+ +GFG D+  N
Sbjct: 12  GRLAEALKL---LSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLN 68

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           + L+ FY K G +  AR+VFD M  ++V+SW A+++GY  +GR E+A  LF  M   G++
Sbjct: 69  TKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVK 128

Query: 431 PNHVTFLAVLSACS 444
            N  T+ + L AC+
Sbjct: 129 ANQFTYGSALRACT 142



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 3/175 (1%)

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
           + + S    K  HA  +     L I   + L++ YSK+G IE AR+VFD+M  +N  SW+
Sbjct: 755 SEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWS 814

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG-LSERGWEIFQSMSR 461
            +++GY   G  EEAV LF QM   G+ PN     ++++ACSRSG +++ G+++   + +
Sbjct: 815 TMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVK 874

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
              +    +  A ++   G  GL+  A  L    P     + W +L+     +GN
Sbjct: 875 TGILGDVYVGTA-LVHFYGSIGLVYNAQKLFEEMPDHNVVS-WTSLMVGYSDSGN 927



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/208 (22%), Positives = 96/208 (46%), Gaps = 3/208 (1%)

Query: 111  REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
             EAL++F  +    G ++   ++   ++A   L  + E +++   ++  GFE DL++ N 
Sbjct: 1334 EEALKIFGEMR-NVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNA 1392

Query: 171  VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
             + M+ +CG M D  ++  +   R+ +S N++I+     G + +A   F ++ +      
Sbjct: 1393 AMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPD 1452

Query: 231  SRTFATMIRASAGLELISVGKQLH-SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              TF +++ A     L+  G   + S   + G    +     +ID+  + G +  A+G  
Sbjct: 1453 HVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFI 1512

Query: 290  DEMS-EKTTVGWNTIIAGYALHGYSEEA 316
             EM      + W +++A   +HG  E A
Sbjct: 1513 KEMPVPPNDLAWRSLLAACRIHGNLELA 1540


>gi|302791754|ref|XP_002977643.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
 gi|300154346|gb|EFJ20981.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
          Length = 879

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/608 (37%), Positives = 352/608 (57%), Gaps = 4/608 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I +    +R+ EALELF+++  EG   +      A+++AC G R + E + +  +M  
Sbjct: 273 AMITQYTQRERWDEALELFKVMLLEG-VKLDRIACMAVLNACSGPRGLEEGRIIHGFMRE 331

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
             F+  +   N ++ M+ +CG + +A  +F  M  R+++S N IIA       + EA  L
Sbjct: 332 IRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHL 391

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
              +  +       +F   +   A  E ++ G+ +HS  ++ G   +V +  A++DMY  
Sbjct: 392 LHLMQLDGVKADKISFVNALPLCATSEALAKGRMIHSWIVESGIKADVMLDNAILDMYGS 451

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG-YSEEALDLYYEMRDSGVKMDHFTFSM 337
           C S +DA  VF  M  +  V WN +I  YA     S EAL L+ +M+  G   D  +F  
Sbjct: 452 CKSTDDASRVFRAMKVRDQVSWNAMITAYAAQPRLSSEALLLFQQMQLHGFMPDVISFVA 511

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
            +  C   ASL   K  H  +   G   ++   +A+++ Y+K G +  AR +F KM   +
Sbjct: 512 ALSACAAQASLAEGKLLHDRIRETGLESNMTVANAVLNMYAKSGTLVLARKMFGKMPLPD 571

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           VISWN +I+ +  HG  ++ +  F +M   G  PN VTF++V+SACS  GL + G ++F 
Sbjct: 572 VISWNGMISAFAQHGHADQVLRFFRRMNHEGKLPNDVTFVSVVSACSHGGLVKDGVQLFV 631

Query: 458 SMSRDH-KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
           S+  D   I PRA HY CM++L+ R G LD A   I  AP K  + + + +L A +V+ +
Sbjct: 632 SLLHDFPTISPRAEHYYCMVDLIARAGKLDAAEKFIAAAPLKPDRVIHSTMLGASKVHKD 691

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
           +E  + +AE L  + P++ + YVVL N+Y+  GK  E A++ R +  K +R  PA S I 
Sbjct: 692 VERARKSAEHLMELTPDRSAAYVVLSNLYDEVGKKDEGAKIRRLMYEKNIRKEPAFSSIA 751

Query: 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYH 635
           VK++ H F +GD ++ +T EI  +++R+ LE++K GY P+   +L DV DEQ++R+LSYH
Sbjct: 752 VKRRVHEFFTGDTTNARTPEILEELERLSLEMAKAGYTPDTTLMLHDVGDEQKKRLLSYH 811

Query: 636 SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
           SEKLA+AFGLI+T+  T L+I+++ R+C DCH A K I+ +TGREIVVRD+ RFHHF +G
Sbjct: 812 SEKLAIAFGLISTAPGTSLRIIKNLRVCGDCHTATKFISKITGREIVVRDSHRFHHFDNG 871

Query: 696 MCSCGDYW 703
            CSCGDYW
Sbjct: 872 TCSCGDYW 879



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 189/386 (48%), Gaps = 16/386 (4%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y  L+      RS+   K V + +  +  +   +M + ++ M+V CG +IDA+  FD MP
Sbjct: 1   YADLLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMP 60

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA-SAGLELISVGK 251
            ++ ++   +I      GD  +A  LF  +  E     +R F  ++ A SA  EL+  G+
Sbjct: 61  VQDALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGR 120

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           ++H          + +VS  L+ MY KC S+EDA+ VFD +  K  V WN +I  YA   
Sbjct: 121 RIHGVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQD 180

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-------HGFG 364
           + E+A+ ++Y M   GVK +  TF  ++  C++L  LE AK     LV+       H   
Sbjct: 181 HHEQAIQVFYAMLLEGVKAERITFIGVLDACSKLKDLEVAK-----LVKLCVEEREHDHL 235

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D    +ALV+FY   G +E A   F +   + +++  A+I  Y    R +EA+ELF+ M
Sbjct: 236 HDSSFATALVNFYGSCGDLEQAFRAFSRHRLELILA-TAMITQYTQRERWDEALELFKVM 294

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
           LL G++ + +  +AVL+ACS     E G  I     R+ +          +I + G+ G 
Sbjct: 295 LLEGVKLDRIACMAVLNACSGPRGLEEG-RIIHGFMREIRFDRHVNAGNALINMYGKCGS 353

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTA 510
           L+EA  + R    +   + W  ++ A
Sbjct: 354 LEEAVEVFRSMQHRDVIS-WNTIIAA 378



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 212/462 (45%), Gaps = 13/462 (2%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIG-LRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +AL LF  ++ EG   V +  + A++ AC      + E +R+   +  T  E D Y+   
Sbjct: 82  QALHLFRSMQLEGVAPV-NRNFVAVLGACSADPELLEEGRRIHGVLRGTAMESDHYVSTT 140

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           +L M+ +C  + DAR++FD +  + +V  N +I        + +A  +F  +  E     
Sbjct: 141 LLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAE 200

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKM---GFGDNVFVSCALIDMYSKCGSIEDAQG 287
             TF  ++ A + L+ + V K +  C  +       D+ F + AL++ Y  CG +E A  
Sbjct: 201 RITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFAT-ALVNFYGSCGDLEQAFR 259

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
            F     +  +    +I  Y      +EAL+L+  M   GVK+D      ++  C+    
Sbjct: 260 AFSRHRLELILA-TAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRG 318

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           LE  +  H  +    F   + A +AL++ Y K G +E+A  VF  M  ++VISWN +IA 
Sbjct: 319 LEEGRIIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAA 378

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           +G H +  EA+ L   M L+G++ + ++F+  L  C+ S    +G  +  S   +  IK 
Sbjct: 379 HGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCATSEALAKG-RMIHSWIVESGIKA 437

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE---LGKFAA 524
             M    ++++ G     D+A  + R    +   + W A++TA      L    L  F  
Sbjct: 438 DVMLDNAILDMYGSCKSTDDASRVFRAMKVRDQVS-WNAMITAYAAQPRLSSEALLLFQQ 496

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
            +L+G  P+ +S +V  L+   +   L E   +   +R  GL
Sbjct: 497 MQLHGFMPDVIS-FVAALSACAAQASLAEGKLLHDRIRETGL 537


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/574 (36%), Positives = 328/574 (57%), Gaps = 33/574 (5%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           EP +   N ++  +++ GM+ +A+ LFD+MP RN +S   +IAG   +G   EA  L  +
Sbjct: 350 EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQE 409

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           L          +  ++  A + +  +  G Q+HS A+K+G   N F   ALI MY KC +
Sbjct: 410 LHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRN 469

Query: 282 IEDAQGVFDEMSEKTTVGWN-------------------------------TIIAGYALH 310
           +E A+ VF  M  K  V WN                               TII+ YA  
Sbjct: 470 MEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHA 529

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
             S EA+  +  M       +    ++++ +C  L + +  +Q H   ++ G   +++  
Sbjct: 530 EQSNEAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVA 589

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           +AL+  Y K G   D+R +FD M  +++ +WN +I GY  HG G EA+++++ M   G+ 
Sbjct: 590 NALISMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVL 648

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           PN VTF+ +L+ACS +GL + GW+ F+SMS+D+ + P   HYACM++LLGR G +  A  
Sbjct: 649 PNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQ 708

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
            I   P +    +W+ALL AC+++ N E+GK AAEKL+ +EP    NYV+L NIY+S G 
Sbjct: 709 FIYDMPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGM 768

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
             E AEV + ++++G+   P CSW ++K + H F++GD+ H Q +EI   ++ +   +  
Sbjct: 769 WGEVAEVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKA 828

Query: 611 HGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
            GYVP+ + +L D+D EQ++  L YHSEKLAVA+ L+ T    P+QI+++ RIC DCH  
Sbjct: 829 TGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTF 888

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           IK ++ VT R+I +RD +RFHHF++G CSC D+W
Sbjct: 889 IKFVSHVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 172/335 (51%), Gaps = 13/335 (3%)

Query: 122 FEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMM 181
           F+G  +  +  ++A+IS  +    I   +R+F  M S     D+   N +L  +     M
Sbjct: 119 FDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSR----DVSSWNSMLTGYCHSLQM 174

Query: 182 IDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRAS 241
           +DAR LF++MPERNLVS  ++I+G     ++ +A+ +F  +  E        FA+ + A 
Sbjct: 175 VDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAV 234

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED-AQGVFDEMSEKTTVGW 300
            GL  + V + L   ALK GF  +V +  A++++YS+  S+ D A   F+ M E+    W
Sbjct: 235 KGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTW 294

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           +T+IA  +  G  + A+ +Y   RD  VK    + +    + T LA       A   L  
Sbjct: 295 STMIAALSHGGRIDAAIAVYE--RDP-VK----SIACRTALITGLAQCGRIDDARI-LFE 346

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
                 +V+ +AL+  Y + G + +A+ +FDKM  +N ISW  +IAGY  +GR EEA+ L
Sbjct: 347 QIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGL 406

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
            +++  +GM P+  +  ++  ACS     E G ++
Sbjct: 407 LQELHRSGMLPSLSSLTSIFFACSNIVALETGTQV 441



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/386 (21%), Positives = 169/386 (43%), Gaps = 44/386 (11%)

Query: 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
           R G + +AR +FD MP R++++ N +I+    +G    A     DL++  S    RT A 
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAA----RDLYDAISGGNMRTGAI 101

Query: 237 MIRASAGLELISVGKQLHSCALKMG-FGDNVFVSC------------------------- 270
           ++     L  +   +++    L+      N  +SC                         
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSSW 161

Query: 271 -ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            +++  Y     + DA+ +F++M E+  V W  +I+GY       +A D++ +M   G+ 
Sbjct: 162 NSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLL 221

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED-ARH 388
            D   F+  +     L +L+  +      ++ GF  D+V  +A+++ YS+   + D A  
Sbjct: 222 PDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIK 281

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
            F+ M+ +N  +W+ +IA   + GR + A+ ++E+  +  +        A+++  ++ G 
Sbjct: 282 FFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSI----ACRTALITGLAQCGR 337

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
            +    +F+ +      +P  + +  +I    + G+++EA  L    PF+ T + WA ++
Sbjct: 338 IDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTIS-WAGMI 391

Query: 509 TACRVNGNLE--LGKFAAEKLYGMEP 532
                NG  E  LG        GM P
Sbjct: 392 AGYAQNGRSEEALGLLQELHRSGMLP 417



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 99/211 (46%), Gaps = 18/211 (8%)

Query: 359 VRHGFG-LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           VRH  G L++   SA +    + GR+ +AR VFD M  +++I+WN++I+ Y ++G  + A
Sbjct: 25  VRHAHGELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAA 84

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
            +L++ +    MR   +    +LS   R G       +F  M   + +   AM  +C ++
Sbjct: 85  RDLYDAISGGNMRTGAI----LLSGYGRLGRVLEARRVFDGMLERNTVAWNAM-ISCYVQ 139

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTA-CRVNGNLELGKFAAEKLYGMEPEK-L 535
                G +  A  L    P +   + W ++LT  C       L    A  L+   PE+ L
Sbjct: 140 ----NGDITMARRLFDAMPSRDVSS-WNSMLTGYCH-----SLQMVDARNLFEKMPERNL 189

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
            ++ V+++ Y       +A ++   + R+GL
Sbjct: 190 VSWTVMISGYGRIENHGKAWDIFCKMHREGL 220


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/610 (35%), Positives = 350/610 (57%), Gaps = 9/610 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N    + L +F +     G ++  +T  ++ + C   R I   + V S  + 
Sbjct: 266 SIINGYVSNGLAEKGLSVF-VQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVK 324

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
             F  +    N +L M+ +CG +  A+ +F EM +R++VS   +IAG    G   EA  L
Sbjct: 325 ACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKL 384

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F ++ EE       T   ++   A   L+  GK++H    +   G ++FVS AL+DMY+K
Sbjct: 385 FEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAK 444

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY-YEMRDSGVKMDHFTFSM 337
           CGS+++A+ VF EM  K  + WNTII GY+ + Y+ EAL L+   + +     D  T + 
Sbjct: 445 CGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVAC 504

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           ++  C  L++ +  ++ H  ++R+G+  D    ++LVD Y+K G +  A  +FD +  K+
Sbjct: 505 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKD 564

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           ++SW  +IAGYG HG G+EA+ LF QM   G+  + ++F+++L ACS SGL + GW  F 
Sbjct: 565 LVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFN 624

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
            M  + KI+P   HYAC++++L R G L +A+  I   P      +W ALL  CR++ ++
Sbjct: 625 IMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDV 684

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
           +L +  AEK++ +EPE    YV++ NIY  + K ++   + + + ++GLR  P CSWIE+
Sbjct: 685 KLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEI 744

Query: 578 KKQPHVFLSGDQSHVQTKEI---YRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLS 633
           K + ++F++GD S+ +T+ I    RKV   M+E    GY P  K  L D +E E +  L 
Sbjct: 745 KGRVNIFVAGDSSNPETENIEAFLRKVRARMIE---EGYSPLTKYALIDAEEMEKEEALC 801

Query: 634 YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
            HSEKLA+A G+I++     +++ ++ R+C DCH   K ++ +T REIV+RD++RFH FK
Sbjct: 802 GHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFK 861

Query: 694 DGMCSCGDYW 703
           DG CSC  +W
Sbjct: 862 DGHCSCRGFW 871



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 128/445 (28%), Positives = 229/445 (51%), Gaps = 10/445 (2%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G ++ S T+  +  +   LRS+   +++  ++L +GF     + N ++  +++   +  A
Sbjct: 190 GVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSA 249

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R++FDEM ER+++S N II G + +G   +   +F+ +     +    T  ++    A  
Sbjct: 250 RKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADS 309

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
            LIS+G+ +HS  +K  F         L+DMYSKCG ++ A+ VF EMS+++ V + ++I
Sbjct: 310 RLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMI 369

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           AGYA  G + EA+ L+ EM + G+  D +T + ++  C R   L+  K+ H  +  +  G
Sbjct: 370 AGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLG 429

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            DI  ++AL+D Y+K G +++A  VF +M  K++ISWN +I GY  +    EA+ LF  +
Sbjct: 430 FDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLF-NL 488

Query: 425 LLNGMR--PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA-CMIELLGR 481
           LL   R  P+  T   VL AC+     ++G EI   + R+     R  H A  ++++  +
Sbjct: 489 LLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVDMYAK 546

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVN--GNLELGKFAAEKLYGMEPEKLSNYV 539
            G L  A  L      K   + W  ++    ++  G   +  F   +  G+E +++S +V
Sbjct: 547 CGALLLAHMLFDDIASKDLVS-WTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEIS-FV 604

Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRK 564
            LL   + SG + E       +R +
Sbjct: 605 SLLYACSHSGLVDEGWRFFNIMRHE 629



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 106/342 (30%), Positives = 191/342 (55%), Gaps = 4/342 (1%)

Query: 118 EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR 177
           ++L   G +D+   T  +++  C   +S+++ K V +++   GF  D  + +++ LM+  
Sbjct: 82  KLLCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTN 141

Query: 178 CGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATM 237
           CG + +A R+FDE+     +  N+++  +  SGD+  +  LF  +     +  S TF+ +
Sbjct: 142 CGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCV 201

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
            ++ + L  +  G+QLH   LK GFG+   V  +L+  Y K   ++ A+ VFDEM+E+  
Sbjct: 202 SKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDV 261

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC--TRLASLEHAKQAH 355
           + WN+II GY  +G +E+ L ++ +M  SG+++D  T   +   C  +RL SL   +  H
Sbjct: 262 ISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISL--GRAVH 319

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
           +  V+  F  +    + L+D YSK G ++ A+ VF +M  ++V+S+ ++IAGY   G   
Sbjct: 320 SIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAG 379

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           EAV+LFE+M   G+ P+  T  AVL+ C+R  L + G  + +
Sbjct: 380 EAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHE 421


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/584 (35%), Positives = 335/584 (57%), Gaps = 25/584 (4%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+   I +C  L      K++  ++  TG   + +++  ++ M+ +C ++ +AR+LFDE 
Sbjct: 12  TFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLFDEN 71

Query: 192 PE-RNLVSC-NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
           P+ R L  C N +++G   +    +  +LF ++ E   +    T   +++       + +
Sbjct: 72  PQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGL 131

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G  +H   +K G   +  V   L+ MY K G I+  + +FDEM  K  + WN +I GYA 
Sbjct: 132 GMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMINGYAQ 191

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +G +   L+LY EM   G   D  T   ++  C  L +L   K+    +   GF  +   
Sbjct: 192 NGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFL 251

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
           N+ALV+ Y++ G ++ AR +FD M  K+V+SW A+I GYG HG+GE AV LF++M+  G+
Sbjct: 252 NNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGI 311

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
           +P+   F++VLSACS +GL+ +G + F  M R + ++P A HY+CM++LLGR G L+EA 
Sbjct: 312 KPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGRLNEAR 371

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549
            LI     +    +W ALL AC+++ N+EL + A E++  +EP     YV+L N+Y  +G
Sbjct: 372 ELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNVYTEAG 431

Query: 550 KLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEIS 609
            L+    V   +R++ L+  P CS++E K + H+F +GD++H QT EIY+K++       
Sbjct: 432 NLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLN------- 484

Query: 610 KHGYVPEEKTLLPDVD-----EQEQR-----VLSYHSEKLAVAFGLINTSDWTPLQIVQS 659
                 E + L+ D+D     + E+R      +  HSEKLAVAF L+NT   T + I+++
Sbjct: 485 ------ELENLVKDLDGCKKNDHERREEYLNSMGVHSEKLAVAFALLNTRKETEIIIIKN 538

Query: 660 HRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            RIC DCH  IKL++ +  R+ VVRDA+RFHHFK+G CSC +YW
Sbjct: 539 LRICGDCHLFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 117/297 (39%), Gaps = 53/297 (17%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M  SG   + FTF   I+ C  L+     KQ H  + + G  L+    ++L+  Y K   
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 383 IEDARHVFDK--MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
           I++AR +FD+     K  + +N+L++GY  + R ++ V LF +M   G+  N VT L ++
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 441 SACS-----------------------------------RSGLSERGWEIFQSMSRDHKI 465
             C                                    +SG  + G ++F  M R   I
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLI 180

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIR---GAPFKTTKNMWAALLTACRVNGNLELGKF 522
              A     MI    + GL +    L +      F         +L++C   G L +GK 
Sbjct: 181 TWNA-----MINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKE 235

Query: 523 AAEKL--YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
              K+  +G       N   L+N+Y   G LK+A ++       G+ +    SW  +
Sbjct: 236 VERKMEGFGFSSNPFLNN-ALVNMYARCGNLKKARDIF-----DGMPVKSVVSWTAI 286


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  394 bits (1012), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/601 (35%), Positives = 351/601 (58%), Gaps = 3/601 (0%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N  + ++L+L   +    GF   + T+D  + A IGL +    K V   +L T +  D
Sbjct: 223 VENGYFEDSLKLLSCMRM-AGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLD 281

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
             +   +L ++ + G M DA ++F+EMP+ ++V  + +IA    +G   EA  LF+ + E
Sbjct: 282 PRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMRE 341

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
            F      T ++++   A  +   +G+QLH   +K+GF  +++VS ALID+Y+KC  ++ 
Sbjct: 342 AFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDT 401

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A  +F E+S K  V WNT+I GY   G   +A  ++ E   + V +   TFS  +  C  
Sbjct: 402 AVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACAS 461

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           LAS++   Q H   ++      +  +++L+D Y+K G I+ A+ VF++M   +V SWNAL
Sbjct: 462 LASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNAL 521

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I+GY  HG G +A+ + + M     +PN +TFL VLS CS +GL ++G E F+SM RDH 
Sbjct: 522 ISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHG 581

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           I+P   HY CM+ LLGR G LD+A  LI G P++ +  +W A+L+A     N E  + +A
Sbjct: 582 IEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSA 641

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
           E++  + P+  + YV++ N+Y  + +    A + ++++  G++  P  SWIE +   H F
Sbjct: 642 EEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYF 701

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAF 643
             G   H   K I   ++ + ++ ++ GYVP+   +L D+D++E+ + L  HSE+LA+A+
Sbjct: 702 SVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAY 761

Query: 644 GLIN-TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           GL+   S    + I+++ RIC DCH+A+K+I+ +  R++V+RD +RFHHF  G+CSCGD+
Sbjct: 762 GLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDH 821

Query: 703 W 703
           W
Sbjct: 822 W 822



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 135/509 (26%), Positives = 233/509 (45%), Gaps = 50/509 (9%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S  Y A++  CI        K +   +L  G   DL+  N +L  +V+ G   DA  LFD
Sbjct: 49  SHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFD 108

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
           EMPERN VS   +  G        +   L+  L  E  +     F + ++    L+   +
Sbjct: 109 EMPERNNVSFVTLAQGYACQ----DPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEI 164

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
              LHS  +K+G+  N FV  ALI+ YS CGS++ A+ VF+ +  K  V W  I++ Y  
Sbjct: 165 CPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVE 224

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +GY E++L L   MR +G   +++TF   ++    L + + AK  H  +++  + LD   
Sbjct: 225 NGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRV 284

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
              L+  Y++ G + DA  VF++M   +V+ W+ +IA +  +G   EAV+LF +M    +
Sbjct: 285 GVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFV 344

Query: 430 RPNHVTFLAVLSACSR---SGLSER--------GWEIFQSMSR---DHKIKPRAMHYACM 475
            PN  T  ++L+ C+    SGL E+        G+++   +S    D   K   M  A  
Sbjct: 345 VPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVK 404

Query: 476 I--------------ELLGREGLLD--EAFALIRGA---PFKTTKNMWAALLTACRVNGN 516
           +               ++G E L +  +AF++ R A       T+  +++ L AC    +
Sbjct: 405 LFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLAS 464

Query: 517 LELG-KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575
           ++LG +     +     +K++    L+++Y   G +K A  V        +  +   SW 
Sbjct: 465 MDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNE-----METIDVASW- 518

Query: 576 EVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
                 +  +SG  +H   ++  R +D M
Sbjct: 519 ------NALISGYSTHGLGRQALRILDIM 541



 Score = 48.1 bits (113), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 5/131 (3%)

Query: 311 GYSEEALDLYYEMRDSGVK-MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           G+S +   L  E  DS +  +D   +  ++R C +      AK  H  +++ G  LD+ A
Sbjct: 27  GFSVKTAALDLESSDSIIPGLDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFA 86

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            + L++ Y K G  +DA ++FD+M  +N +S+  L  GY      ++ + L+ ++   G 
Sbjct: 87  TNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYA----CQDPIGLYSRLHREGH 142

Query: 430 RPNHVTFLAVL 440
             N   F + L
Sbjct: 143 ELNPHVFTSFL 153


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/560 (35%), Positives = 334/560 (59%), Gaps = 2/560 (0%)

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
           + E K ++S + S   E D+ + N  + M    G++ DARRLF++M +R++V+ N++I  
Sbjct: 223 LSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITF 282

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
            + + ++ EA  LF  L ++       TF  M+     L  ++ GK +H    + G+  +
Sbjct: 283 YVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRD 342

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
           V V+ AL+ +Y +C +   A  +F +M  K  + W  +   YA +G+ +EAL L+ EM+ 
Sbjct: 343 VVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQL 402

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
            G +    T   ++  C  LA+L+  +Q H+ ++ +GF +++V  +AL++ Y K G++ +
Sbjct: 403 EGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAE 462

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           AR VF+KM  ++++ WN+++  Y  HG  +E ++LF QM L+G + + V+F++VLSA S 
Sbjct: 463 ARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSH 522

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI-RGAPFKTTKNMW 504
           SG    G++ F +M +D  I P    Y C+++LLGR G + EA  ++ + +       +W
Sbjct: 523 SGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILW 582

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
             LL ACR +   +  K AAE++   +P     YVVL N+Y ++G       + + +R +
Sbjct: 583 MTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSR 642

Query: 565 GLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV 624
           G++  P  S IE+  + H FL GD+SH +   IY ++D +  E+   GY+P+ K +L DV
Sbjct: 643 GVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDV 702

Query: 625 -DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVV 683
            DE+++ +L YHSE+LA+AFGL++T   TPL+++++ R+C DCH A K I+ + GREI+V
Sbjct: 703 EDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILV 762

Query: 684 RDASRFHHFKDGMCSCGDYW 703
           RD  RFH+FKDG CSC DYW
Sbjct: 763 RDTHRFHNFKDGRCSCKDYW 782



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 114/451 (25%), Positives = 218/451 (48%), Gaps = 10/451 (2%)

Query: 110 YREALELFEILEFEGGFDVGSS--TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
           Y  AL +F  ++ E   DV  +  TY A+++AC    S+++   +   +L  GFE D+++
Sbjct: 87  YDRALGMFYQMQEE---DVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFV 143

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
              ++ M+ +CG +  A   F  +  R++VS   +IA  +    +  A  L+  +  +  
Sbjct: 144 GTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGV 203

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
                T  T+  A      +S GK ++S         +V V  + ++M+   G + DA+ 
Sbjct: 204 VPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARR 263

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           +F++M ++  V WN +I  Y  +    EA+ L+  ++  G+K +  TF +++ + T L S
Sbjct: 264 LFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTS 323

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           L   K  H  +   G+  D+V  +AL+  Y +      A  +F  M  K+VI+W  +   
Sbjct: 324 LAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVA 383

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           Y  +G  +EA++LF++M L G RP   T +AVL  C+     ++G +I  S   ++  + 
Sbjct: 384 YAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQI-HSHIIENGFRM 442

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAE 525
             +    +I + G+ G + EA ++      K    +W ++L A   +G  +  L  F   
Sbjct: 443 EMVVETALINMYGKCGKMAEARSVFEKMA-KRDILVWNSMLGAYAQHGYYDETLQLFNQM 501

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
           +L G + + +S +V +L+  + SG + +  +
Sbjct: 502 QLDGEKADAVS-FVSVLSALSHSGSVTDGYQ 531



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/483 (22%), Positives = 203/483 (42%), Gaps = 50/483 (10%)

Query: 126 FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
           F   ++ + AL+  C   +++   +RV  ++   GFE +  +   ++ M+ +CG + +A+
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQ 60

Query: 186 RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
           ++F+ +  +++ +   +I      GDY  A  +F  + EE       T+  ++ A A  E
Sbjct: 61  QVFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTE 120

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
            +  G ++H   L+ GF  +VFV  ALI+MY+KCGS+  A   F  +  +  V W  +IA
Sbjct: 121 SLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIA 180

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
               H     A  LY  M+  GV  +  T   +         L   K  ++ +       
Sbjct: 181 ACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMES 240

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           D+   ++ ++ +   G + DAR +F+ M+ ++V++WN +I  Y  +    EAV LF ++ 
Sbjct: 241 DVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQ 300

Query: 426 LNGMRPNHVTFL-----------------------------------AVLSACSRSGLSE 450
            +G++ N +TF+                                   A++S   R     
Sbjct: 301 QDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPG 360

Query: 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF---KTTKNMWAAL 507
           + W+IF  M     I      +  M     + G   EA  L +       + T     A+
Sbjct: 361 QAWKIFVDMGSKDVIT-----WTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAV 415

Query: 508 LTACRVNGNLELGK----FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           L  C     L+ G+       E  + ME   +     L+N+Y   GK+ EA  V   + +
Sbjct: 416 LDTCAHLAALQKGRQIHSHIIENGFRME---MVVETALINMYGKCGKMAEARSVFEKMAK 472

Query: 564 KGL 566
           + +
Sbjct: 473 RDI 475



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 180/381 (47%), Gaps = 10/381 (2%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N+ + EA+ LF  L+ + G      T+  +++    L S+ + K +   +   G++ D
Sbjct: 284 VQNENFGEAVRLFGRLQ-QDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRD 342

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           + +   ++ ++ RC     A ++F +M  +++++  ++      +G   EA  LF ++  
Sbjct: 343 VVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQL 402

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
           E     S T   ++   A L  +  G+Q+HS  ++ GF   + V  ALI+MY KCG + +
Sbjct: 403 EGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAE 462

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+ VF++M+++  + WN+++  YA HGY +E L L+ +M+  G K D  +F  ++   + 
Sbjct: 463 ARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSH 522

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVAN--SALVDFYSKWGRIEDARHVFDKM--LCKNVIS 400
             S+    Q    +++  F +         +VD   + GRI++A  +  K+     + I 
Sbjct: 523 SGSVTDGYQYFVAMLQD-FSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGIL 581

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           W  L+     H + ++A    EQ+L     P+H     VLS    +     G    + + 
Sbjct: 582 WMTLLGACRTHNKTDQAKAAAEQVLERD--PSHSGAYVVLSNVYAAAGDWDGVNRMRKLM 639

Query: 461 RDHKIKPRAMHYACMIELLGR 481
           R   +K      +  IE+L R
Sbjct: 640 RSRGVKKEPGRSS--IEILNR 658


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/529 (38%), Positives = 322/529 (60%), Gaps = 8/529 (1%)

Query: 182 IDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMI--R 239
           +DARR FDE+P+ N V    + +G + +     +  LF  +    S       A ++   
Sbjct: 1   MDARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFS 60

Query: 240 ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS--IEDAQGVFDEMSEKTT 297
           ASA +    V   LH+   K+GF  N  V   ++D Y+K GS  +E A+ VFD M E+  
Sbjct: 61  ASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDV 119

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRD--SGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
           V WN++IA YA +G S EA+ LY +M +   G+K +    S ++  C    +++  K  H
Sbjct: 120 VSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIH 179

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
             +VR G   ++   +++VD YSK GR+E A   F K+  KN++SW+A+I GYG HGRG+
Sbjct: 180 NQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQ 239

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
           EA+E+F +M  +G+RPN++TF++VL+ACS +GL + G   + +M ++  I+    HY CM
Sbjct: 240 EALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCM 299

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535
           ++LLGR G LDEA++LI+    K    +W ALL+ACR++ N+EL + + ++L+ ++    
Sbjct: 300 VDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNS 359

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTK 595
             YV+L NIY  +G  K+   +   ++ + +   P  S  E+K + ++F  GD+SH Q  
Sbjct: 360 GYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHI 419

Query: 596 EIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPL 654
           EIY  +++++  + + GYVP   ++L D+DE+E+   L  HSEKLAVAF L+N+   + +
Sbjct: 420 EIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVI 479

Query: 655 QIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            I+++ R+C DCH A+K I  +T REI++RD  RFHHFKDG+CSC DYW
Sbjct: 480 HIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 104/222 (46%), Gaps = 5/222 (2%)

Query: 99  SQIEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           S I     N    EA+ L+ ++L   GG    +    A++ AC    +I+  K + + ++
Sbjct: 124 SMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVV 183

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
             G E ++Y+   ++ M+ +CG +  A R F ++ E+N++S + +I G    G   EA  
Sbjct: 184 RMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALE 243

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS--CALIDM 275
           +F ++          TF +++ A +   L+  G+  ++ A+K  FG    V     ++D+
Sbjct: 244 IFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYN-AMKQEFGIEAGVEHYGCMVDL 302

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYSEEA 316
             + G +++A  +  EM  K     W  +++   +H   E A
Sbjct: 303 LGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELA 344


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 225/628 (35%), Positives = 357/628 (56%), Gaps = 36/628 (5%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYM---------- 156
           N R REA++LF  + F+   DV S  ++++I  C+    I   +++F  M          
Sbjct: 99  NHRLREAIDLFRRIPFK---DVVS--WNSIIKGCLHCGDIVTARKLFDEMPRRTVVSWTT 153

Query: 157 ----------------LSTGFEP---DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLV 197
                           L    EP   D+   N ++  +   G + DA +LF +MP R+++
Sbjct: 154 LVDGLLRLGIVQEAETLFWAMEPMDRDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVI 213

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257
           S + +IAG+  +G   +A +LF D+        S      + A+A +    VG Q+H   
Sbjct: 214 SWSSMIAGLDHNGKSEQALVLFRDMVASGVCLSSGVLVCGLSAAAKIPAWRVGIQIHCSV 273

Query: 258 LKMG-FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
            K+G +  + FVS +L+  Y+ C  +E A  VF E+  K+ V W  ++ GY L+    EA
Sbjct: 274 FKLGDWHFDEFVSASLVTFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGYGLNDKHREA 333

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
           L+++ EM    V  +  +F+  +  C  L  +E  K  HA  V+ G         +LV  
Sbjct: 334 LEVFGEMMRIDVVPNESSFTSALNSCCGLEDIERGKVIHAAAVKMGLESGGYVGGSLVVM 393

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           YSK G + DA +VF  +  KNV+SWN++I G   HG G  A+ LF QML  G+ P+ +T 
Sbjct: 394 YSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQHGCGMWALALFNQMLREGVDPDGITV 453

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
             +LSACS SG+ ++    F+   +   +     HY  M+++LGR G L+EA A++   P
Sbjct: 454 TGLLSACSHSGMLQKARCFFRYFGQKRSVTLTIEHYTSMVDVLGRCGELEEAEAVVMSMP 513

Query: 497 FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
            K    +W ALL+ACR + NL+L K AA +++ +EP+  + YV+L N+Y SS +  E A 
Sbjct: 514 MKANSMVWLALLSACRKHSNLDLAKRAANQIFEIEPDCSAAYVLLSNLYASSSRWAEVAL 573

Query: 557 VIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPE 616
           + R ++  G+   P  SW+ +K Q H FLS D+SH   ++IY+K++ + +++ + GYVP+
Sbjct: 574 IRRKMKHNGVVKKPGSSWLTLKGQKHKFLSADRSHPLAEKIYQKLEWLGVKLKELGYVPD 633

Query: 617 EKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAM 675
           ++  L DV+ EQ++ +LSYHSE+LA+AFGL++T + + + ++++ R+C DCHNAIKL+A 
Sbjct: 634 QQFALHDVETEQKEEMLSYHSERLAIAFGLLSTVEGSAITVMKNLRVCGDCHNAIKLMAK 693

Query: 676 VTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +  REIVVRD+SRFH FK+G+CSCGDYW
Sbjct: 694 IVDREIVVRDSSRFHDFKNGICSCGDYW 721



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 96/199 (48%), Gaps = 14/199 (7%)

Query: 106 LNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           LN ++REALE+F E++  +       S++ + +++C GL  I   K + +  +  G E  
Sbjct: 326 LNDKHREALEVFGEMMRID--VVPNESSFTSALNSCCGLEDIERGKVIHAAAVKMGLESG 383

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
            Y+   +++M+ +CG + DA  +F  + E+N+VS N +I G    G  + A  LF  +  
Sbjct: 384 GYVGGSLVVMYSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQHGCGMWALALFNQMLR 443

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS------CALIDMYSK 278
           E  D    T   ++ A +   ++    Q   C  +  FG    V+       +++D+  +
Sbjct: 444 EGVDPDGITVTGLLSACSHSGML----QKARCFFRY-FGQKRSVTLTIEHYTSMVDVLGR 498

Query: 279 CGSIEDAQGVFDEMSEKTT 297
           CG +E+A+ V   M  K  
Sbjct: 499 CGELEEAEAVVMSMPMKAN 517



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 90/174 (51%), Gaps = 6/174 (3%)

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
           ++  Y++   + +A  +F  +  K  V WN+II G    G    A  L+ EM    V   
Sbjct: 92  MLHAYAQNHRLREAIDLFRRIPFKDVVSWNSIIKGCLHCGDIVTARKLFDEMPRRTV--- 148

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
             +++ ++    RL  ++ A+     +       D+ A +A++  Y   GR++DA  +F 
Sbjct: 149 -VSWTTLVDGLLRLGIVQEAETLFWAM--EPMDRDVAAWNAMIHGYCSNGRVDDALQLFC 205

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           +M  ++VISW+++IAG  ++G+ E+A+ LF  M+ +G+  +    +  LSA ++
Sbjct: 206 QMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVCLSSGVLVCGLSAAAK 259



 Score = 40.0 bits (92), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 67/145 (46%), Gaps = 14/145 (9%)

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           Y++  R+ +A  +F ++  K+V+SWN++I G  + G    A +LF++M     R   V++
Sbjct: 96  YAQNHRLREAIDLFRRIPFKDVVSWNSIIKGCLHCGDIVTARKLFDEM----PRRTVVSW 151

Query: 437 LAVLSACSRSGLSERGWEIF---QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
             ++    R G+ +    +F   + M RD       +H  C        G +D+A  L  
Sbjct: 152 TTLVDGLLRLGIVQEAETLFWAMEPMDRDVAAWNAMIHGYC------SNGRVDDALQLFC 205

Query: 494 GAPFKTTKNMWAALLTACRVNGNLE 518
             P +   + W++++     NG  E
Sbjct: 206 QMPSRDVIS-WSSMIAGLDHNGKSE 229


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/573 (34%), Positives = 328/573 (57%), Gaps = 1/573 (0%)

Query: 132  TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            TY +++  CI L  +   +++ S ++ T F+ + Y+ + ++ M+ + G +  A  +    
Sbjct: 452  TYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 511

Query: 192  PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
              +++VS   +IAG        +A   F  + +             + A AGL+ +  G+
Sbjct: 512  AGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQ 571

Query: 252  QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            Q+H+ A   GF  ++    AL+ +YS+CG IE++   F++      + WN +++G+   G
Sbjct: 572  QIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSG 631

Query: 312  YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             +EEAL ++  M   G+  ++FTF   ++  +  A+++  KQ HA + + G+  +    +
Sbjct: 632  NNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCN 691

Query: 372  ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
            AL+  Y+K G I DA   F ++  KN +SWNA+I  Y  HG G EA++ F+QM+ + +RP
Sbjct: 692  ALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRP 751

Query: 432  NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
            NHVT + VLSACS  GL ++G   F+SM+ ++ + P+  HY C++++L R GLL  A   
Sbjct: 752  NHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEF 811

Query: 492  IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
            I+  P K    +W  LL+AC V+ N+E+G+FAA  L  +EPE  + YV+L N+Y  S K 
Sbjct: 812  IQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKW 871

Query: 552  KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
                   + ++ KG++  P  SWIEVK   H F  GDQ+H    EI+     +    S+ 
Sbjct: 872  DARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEI 931

Query: 612  GYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
            GYV +  +LL ++  EQ+  ++  HSEKLA++FGL++     P+ ++++ R+C DCH  I
Sbjct: 932  GYVQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWI 991

Query: 671  KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            K ++ V+ REI+VRDA RFHHF+ G CSC DYW
Sbjct: 992  KFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 195/390 (50%), Gaps = 10/390 (2%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           + +++SAC  + S+   +++   +L  GF  D Y+ N ++ ++   G +I A  +F  M 
Sbjct: 251 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMS 310

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           +R+ V+ N +I G+   G   +A  LF  +  +  +  S T A+++ A +    +  G+Q
Sbjct: 311 QRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQ 370

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LH+   K+GF  N  +  AL+++Y+KC  IE A   F E   +  V WN ++  Y L   
Sbjct: 371 LHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDD 430

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
              +  ++ +M+   +  + +T+  I++ C RL  LE  +Q H+ +++  F L+    S 
Sbjct: 431 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSV 490

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D Y+K G+++ A  +  +   K+V+SW  +IAGY  +   ++A+  F QML  G+R +
Sbjct: 491 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSD 550

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            V     +SAC+     + G +I                 A ++ L  R G ++E++   
Sbjct: 551 EVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNA-LVTLYSRCGKIEESY--- 606

Query: 493 RGAPFKTTKN----MWAALLTACRVNGNLE 518
               F+ T+      W AL++  + +GN E
Sbjct: 607 --LAFEQTEAGDNIAWNALVSGFQQSGNNE 634



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 232/493 (47%), Gaps = 46/493 (9%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +A+ELF+ +  +G  +  S+T  +L+ AC    ++   +++ +Y    GF  +  +   +
Sbjct: 332 KAMELFKRMHLDG-LEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGAL 390

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA--GMIDSGDYLEAFLLFLDLWEEFSDC 229
           L ++ +C  +  A   F E    N+V  N+++   G++D  D   +F +F  +  E    
Sbjct: 391 LNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD--DLRNSFRIFRQMQIEEIVP 448

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              T+ ++++    L  + +G+Q+HS  +K  F  N +V   LIDMY+K G ++ A  + 
Sbjct: 449 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDIL 508

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
              + K  V W T+IAGY  + + ++AL  + +M D G++ D    +  +  C  L +L+
Sbjct: 509 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 568

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             +Q HA     GF  D+   +ALV  YS+ G+IE++   F++    + I+WNAL++G+ 
Sbjct: 569 EGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQ 628

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI-------------- 455
             G  EEA+ +F +M   G+  N+ TF + + A S +   ++G ++              
Sbjct: 629 QSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETE 688

Query: 456 ---------------------FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
                                F  +S  +++   A+  A      G E L  ++F  +  
Sbjct: 689 VCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEAL--DSFDQMIH 746

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKL 551
           +  +        +L+AC   G ++ G    E +   YG+ P K  +YV ++++   +G L
Sbjct: 747 SNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSP-KPEHYVCVVDMLTRAGLL 805

Query: 552 KEAAEVIRTLRRK 564
             A E I+ +  K
Sbjct: 806 SRAKEFIQEMPIK 818



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 126/471 (26%), Positives = 227/471 (48%), Gaps = 38/471 (8%)

Query: 125 GFDVGSSTYDALISACIGLR-SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183
           G      T   L+  C+    S+ E +++ S +L  G + +  +  ++   ++  G +  
Sbjct: 39  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 98

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A ++FDEMPER + + N +I  +       E F LF+ +  E       TF+ ++ A  G
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRG 158

Query: 244 LEL-ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
             +   V +Q+H+  L  G  D+  V   LID+YS+ G ++ A+ VFD +  K    W  
Sbjct: 159 GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVA 218

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I+G + +    EA+ L+ +M   G+    + FS ++  C ++ SLE  +Q H  +++ G
Sbjct: 219 MISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 278

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
           F  D    +ALV  Y   G +  A H+F  M  ++ +++N LI G    G GE+A+ELF+
Sbjct: 279 FSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 338

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR-----DHKIK----------- 466
           +M L+G+ P+  T  +++ ACS  G   RG ++    ++     ++KI+           
Sbjct: 339 RMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCA 398

Query: 467 --PRAMHYACMIE---------LLGREGLLDE---AFALIRGAPFK---TTKNMWAALLT 509
               A+ Y    E         +L   GLLD+   +F + R    +     +  + ++L 
Sbjct: 399 DIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 458

Query: 510 ACRVNGNLELGKFAAEKLYGMEPEKLSNYV--VLLNIYNSSGKLKEAAEVI 558
            C   G+LELG+    ++     + L+ YV  VL+++Y   GKL  A +++
Sbjct: 459 TCIRLGDLELGEQIHSQIIKTNFQ-LNAYVCSVLIDMYAKLGKLDTAWDIL 508



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 3/201 (1%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL +F  +  EG  D  + T+ + + A     ++++ K+V + +  TG++ +  + N +
Sbjct: 635 EALRVFVRMNREG-IDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAL 693

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG + DA + F E+  +N VS N II      G   EA   F  +         
Sbjct: 694 ISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNH 753

Query: 232 RTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
            T   ++ A + + L+  G     S   + G          ++DM ++ G +  A+    
Sbjct: 754 VTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQ 813

Query: 291 EMSEKT-TVGWNTIIAGYALH 310
           EM  K   + W T+++   +H
Sbjct: 814 EMPIKPDALVWRTLLSACVVH 834


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/593 (36%), Positives = 337/593 (56%), Gaps = 34/593 (5%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLM--HVRCGMMIDARRLFDEMPERNLVSCNMI 202
           ++ E++++   ML TG   D    +++L        G +  AR +FD +   N    N +
Sbjct: 30  NMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTM 89

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           I G  +S +  EA LL+  +        + TF  +++A + +      +Q+H+  +KMGF
Sbjct: 90  IRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGF 149

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL------------- 309
           G  ++ + +L+++YSK G I+ A+ +FD++ ++ TV WN++I GY               
Sbjct: 150 GSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNH 209

Query: 310 ------------------HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
                              G  +EAL+L++ M+ +G+K+D+      ++ C  L  L+  
Sbjct: 210 MPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG 269

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K  HA + +H   +D +    L+D Y+K G +E+A  VF KM  K V  W A+I+GY  H
Sbjct: 270 KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIH 329

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           GRG EA+E F +M   G+ PN +TF  +L+ACS +GL      +F+SM R H  KP   H
Sbjct: 330 GRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEH 389

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           Y CM++LLGR GLL EA  LI   P K    +W ALL AC ++GNLELGK   + L  ++
Sbjct: 390 YGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVD 449

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P     Y+ L +I+ ++G+  +AA V R ++ +G+  LP CS I V    H FL+GD+SH
Sbjct: 450 PGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESH 509

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSD 650
            Q KEI   +++++  + + GY P+   LL D++++E+   + +HSEKLAV FGLI+T  
Sbjct: 510 PQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKP 569

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              ++IV++ R+C DCH  IKLI+ V  REI++RD +RFH FKDG C+CGDYW
Sbjct: 570 GMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 172/362 (47%), Gaps = 40/362 (11%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           +K   EAL L+  + +       + T+  L+ AC  + +  E +++ ++++  GF  ++Y
Sbjct: 96  SKEPEEALLLYHHMLYHS-VPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIY 154

Query: 167 MRNRVLLMHVRCGMMIDARRLFDE-------------------------------MPERN 195
             N +L ++ + G +  AR LFD+                               MPERN
Sbjct: 155 TTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERN 214

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
           ++S   +I+G + +G   EA  LF  +        +    + ++A A L ++  GK +H+
Sbjct: 215 IISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHA 274

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
              K     +  + C LIDMY+KCG +E+A  VF +M EK    W  +I+GYA+HG   E
Sbjct: 275 YIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGRE 334

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALV 374
           AL+ + +M+ +GV+ +  TF+ I+  C+    +  AK     + R HGF   I     +V
Sbjct: 335 ALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMV 394

Query: 375 DFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQM--LLNGMRP 431
           D   + G +++A  + + M  K N   W AL+     HG     +EL +Q+  +L  + P
Sbjct: 395 DLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN----LELGKQIGKILIQVDP 450

Query: 432 NH 433
            H
Sbjct: 451 GH 452


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/610 (36%), Positives = 351/610 (57%), Gaps = 7/610 (1%)

Query: 99   SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
            S I  L  N+R+ EA+  F  +   G      S    L S+C  L  I   +++    + 
Sbjct: 426  SIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTL-SSCASLGWIMLGQQIHGEGIK 484

Query: 159  TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS-GDYLEAFL 217
             G + D+ + N +L ++     M + +++F  MPE + VS N  I  +  S    L+A  
Sbjct: 485  CGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIK 544

Query: 218  LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
             FL++ +        TF  ++ A + L L+ +G+Q+H+  LK    D+  +   L+  Y 
Sbjct: 545  YFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYG 604

Query: 278  KCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
            KC  +ED + +F  MSE+   V WN +I+GY  +G   +A+ L + M   G ++D FT +
Sbjct: 605  KCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLA 664

Query: 337  MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
             ++  C  +A+LE   + HA  +R     ++V  SALVD Y+K G+I+ A   F+ M  +
Sbjct: 665  TVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVR 724

Query: 397  NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
            N+ SWN++I+GY  HG G +A++LF QM  +G  P+HVTF+ VLSACS  GL + G+E F
Sbjct: 725  NIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHF 784

Query: 457  QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA-CRVNG 515
            +SM   +++ PR  H++CM++LLGR G + +    I+  P      +W  +L A CR N 
Sbjct: 785  KSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCRANS 844

Query: 516  -NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
             N ELG+ AA+ L  +EP    NYV+L N++ + GK ++  E    +R   ++    CSW
Sbjct: 845  RNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSW 904

Query: 575  IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD-VDEQEQRVLS 633
            + +K   HVF++GDQ+H + ++IY K+  +M ++   GYVPE K  L D   E ++ +LS
Sbjct: 905  VTMKDGVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPETKYALYDLELENKEELLS 964

Query: 634  YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
            YHSEKLA+AF L   S+  P++I+++ R+C DCH A K I+ +  R+I++RD++RFHHF 
Sbjct: 965  YHSEKLAIAFVLTRQSE-LPIRIIKNLRVCGDCHTAFKYISNIVNRQIILRDSNRFHHFD 1023

Query: 694  DGMCSCGDYW 703
             G+CSC DYW
Sbjct: 1024 GGICSCQDYW 1033



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 207/407 (50%), Gaps = 17/407 (4%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           ++ +  ++   +  TG   D++  N ++ + VR G ++ A++LFDEMP++NLVS + +++
Sbjct: 54  TVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVS 113

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA--SAGLELISVGKQLHSCALKMGF 262
           G   +G   EA +LF  +             + +RA    G  ++ +G ++H    K  +
Sbjct: 114 GYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPY 173

Query: 263 GDNVFVSCALIDMYSKC-GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
             ++ +S  L+ MYS C  SI+DA+ VF+E+  KT+  WN+II+ Y   G +  A  L+ 
Sbjct: 174 ASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFS 233

Query: 322 EMRDSGVKM----DHFTFSMIIRICTRLAS--LEHAKQAHAGLVRHGFGLDIVANSALVD 375
            M+    ++    + +TF  ++ +   L    L   +Q  A + +  F  D+   SALV 
Sbjct: 234 SMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVS 293

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            ++++G I+ A+ +F++M  +N ++ N L+ G     +GEEA ++F++M  + +  N  +
Sbjct: 294 GFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEM-KDLVEINASS 352

Query: 436 FLAVLSACSR-SGLSE---RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           +  +LSA +  S L E   +G E+   + R+  +    +    ++ L  +   +D A ++
Sbjct: 353 YAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSI 412

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLS 536
            +  P K T + W ++++    N   E  +  F   +  GM P K S
Sbjct: 413 FQLMPSKDTVS-WNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFS 458



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/297 (24%), Positives = 159/297 (53%), Gaps = 7/297 (2%)

Query: 149 VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
           ++++ + +  + F  DLY+ + ++    R G++  A+ +F++M +RN V+ N ++ G+  
Sbjct: 269 LEQMLARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLAR 328

Query: 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK----QLHSCALKMGFGD 264
                EA  +F ++ ++  +  + ++A ++ A      +  GK    ++H+  ++    D
Sbjct: 329 QHQGEEAAKIFKEM-KDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVD 387

Query: 265 N-VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
             + +  AL+++Y+KC +I++A+ +F  M  K TV WN+II+G   +   EEA+  ++ M
Sbjct: 388 VWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTM 447

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
           R +G+    F+    +  C  L  +   +Q H   ++ G  LD+  ++AL+  Y++   +
Sbjct: 448 RRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCM 507

Query: 384 EDARHVFDKMLCKNVISWNALIAGYG-NHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
           E+ + VF  M   + +SWN+ I     +     +A++ F +M+  G +PN VTF+ +
Sbjct: 508 EEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINI 564



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 152/325 (46%), Gaps = 22/325 (6%)

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           QLH    K G   +VF    L++++ + G++  AQ +FDEM +K  V W+ +++GYA +G
Sbjct: 60  QLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNG 119

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS--LEHAKQAHAGLVRHGFGLDIVA 369
             +EA  L+  +  +G+  +H+     +R C  L    L+   + H  + +  +  D+V 
Sbjct: 120 MPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVL 179

Query: 370 NSALVDFYSKW-GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
           ++ L+  YS     I+DAR VF+++  K   SWN++I+ Y   G    A +LF  M    
Sbjct: 180 SNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREA 239

Query: 429 M----RPNHVTFLAVLS-ACSRSGLSERGWEIFQSM-SRDHKIKPRAMHY--ACMIELLG 480
                RPN  TF ++++ ACS   L + G  + + M +R  K       Y  + ++    
Sbjct: 240 TELNCRPNEYTFCSLVTVACS---LVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFA 296

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540
           R GL+D A  +      +    M   ++   R +   E  K   E +  +     S+Y V
Sbjct: 297 RYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKE-MKDLVEINASSYAV 355

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKG 565
           LL+ +     LKE        +RKG
Sbjct: 356 LLSAFTEFSNLKEG-------KRKG 373


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/626 (35%), Positives = 353/626 (56%), Gaps = 45/626 (7%)

Query: 117 FEILEFEGGFDVGSSTYDALISA---CIGLRSI-REVKRVFSYMLSTGFEPDLYMRNRVL 172
           F     + G    +S  +AL+S    C    S+    ++VF  +L    E D      ++
Sbjct: 171 FHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEIL----EKDERSWTTMM 226

Query: 173 LMHVRCGMMIDARRLFDEMPER-NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
             +V+ G       L + M +   LV+ N +I+G ++ G Y EA  +   +     +   
Sbjct: 227 TGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDE 286

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF-VSCALIDMYSKCGSIEDAQGVFD 290
            T+ ++IRA A   L+ +GKQ+H+  L+    D  F    +L+ +Y KCG  ++A+ +F+
Sbjct: 287 FTYPSVIRACATAGLLQLGKQVHAYVLRRE--DFSFHFDNSLVSLYYKCGKFDEARAIFE 344

Query: 291 EMSEKTTVGWNTIIAGY-------------------------------ALHGYSEEALDL 319
           +M  K  V WN +++GY                               A +G+ EE L L
Sbjct: 345 KMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKL 404

Query: 320 YYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379
           +  M+  G +   + FS  I+ C  L +  + +Q HA L++ GF   + A +AL+  Y+K
Sbjct: 405 FSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAK 464

Query: 380 WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
            G +E+AR VF  M C + +SWNALIA  G HG G EAV+++E+ML  G+RP+ +T L V
Sbjct: 465 CGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTV 524

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499
           L+ACS +GL ++G + F SM   ++I P A HYA +I+LL R G   +A ++I   PFK 
Sbjct: 525 LTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKP 584

Query: 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
           T  +W ALL+ CRV+GN+ELG  AA+KL+G+ PE    Y++L N++ ++G+ +E A V +
Sbjct: 585 TAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRK 644

Query: 560 TLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKT 619
            +R +G++   ACSWIE++ Q H FL  D SH + + +Y  +  +  E+ + GYVP+   
Sbjct: 645 LMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSF 704

Query: 620 LLPDV--DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVT 677
           +L DV  D  ++ +L+ HSEK+AVAFGL+     T ++I ++ R C DCHN  + ++ V 
Sbjct: 705 VLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVV 764

Query: 678 GREIVVRDASRFHHFKDGMCSCGDYW 703
            R+I++RD  RFHHF++G CSCG++W
Sbjct: 765 QRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 142/534 (26%), Positives = 244/534 (45%), Gaps = 106/534 (19%)

Query: 130 SSTYDALISACIGLR--SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL 187
           ++ Y A +  C+ LR  S++  + V   +++ GF+P  ++ NR++ ++ +   +  AR+L
Sbjct: 12  ANRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQL 71

Query: 188 FDEMPE---------------------------------RNLVSCNMIIAGMIDSGDYLE 214
           FDE+ E                                 R+ V  N +I G   + D   
Sbjct: 72  FDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYS 131

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK----QLHSCALKMGFGDNVFVSC 270
           A  LF  +  E     + TFA+++   AGL L++  +    Q H+ ALK G G    VS 
Sbjct: 132 AINLFCKMKHEGFKPDNFTFASVL---AGLALVADDEKQCVQFHAAALKSGAGYITSVSN 188

Query: 271 ALIDMYSKCGS----IEDAQGVFDEMSEKTTVGWNTIIAGYALHGY-------------- 312
           AL+ +YSKC S    +  A+ VFDE+ EK    W T++ GY  +GY              
Sbjct: 189 ALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDN 248

Query: 313 ------------------SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
                              +EAL++   M  SG+++D FT+  +IR C     L+  KQ 
Sbjct: 249 MKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQV 308

Query: 355 HAGLVRH---GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           HA ++R     F  D    ++LV  Y K G+ ++AR +F+KM  K+++SWNAL++GY + 
Sbjct: 309 HAYVLRREDFSFHFD----NSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSS 364

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G   EA  +F++M       N ++++ ++S  + +G  E G ++F  M R+   +P    
Sbjct: 365 GHIGEAKLIFKEM----KEKNILSWMIMISGLAENGFGEEGLKLFSCMKRE-GFEPCDYA 419

Query: 472 YACMIE---LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
           ++  I+   +LG      +  A +    F ++ +   AL+T     G +E     A +++
Sbjct: 420 FSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVE----EARQVF 475

Query: 529 GMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR--------MLPACS 573
              P   S ++  L+      G   EA +V   + +KG+R        +L ACS
Sbjct: 476 RTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACS 529



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 175/359 (48%), Gaps = 41/359 (11%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           Y+EALE+   +    G ++   TY ++I AC     ++  K+V +Y+L    +   +  N
Sbjct: 267 YQEALEMVRRM-VSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDN 324

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE---- 225
            ++ ++ +CG   +AR +F++MP ++LVS N +++G + SG   EA L+F ++ E+    
Sbjct: 325 SLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILS 384

Query: 226 ------------FSDCGSRTFATM---------------IRASAGLELISVGKQLHSCAL 258
                       F + G + F+ M               I++ A L     G+Q H+  L
Sbjct: 385 WMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLL 444

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
           K+GF  ++    ALI MY+KCG +E+A+ VF  M    +V WN +IA    HG+  EA+D
Sbjct: 445 KIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVD 504

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ---AHAGLVRHGFGLDIVANSALVD 375
           +Y EM   G++ D  T   ++  C+    ++  ++   +   + R   G D  A   L+D
Sbjct: 505 VYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYAR--LID 562

Query: 376 FYSKWGRIEDARHVFDKMLCKNVIS-WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
              + G+  DA  V + +  K     W AL++G   HG  E  +   +++   G+ P H
Sbjct: 563 LLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLF--GLIPEH 619


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/661 (32%), Positives = 363/661 (54%), Gaps = 68/661 (10%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           ++ A+  F +     G      T+  ++++C   +++   K+V S+++  G    + + N
Sbjct: 126 FKSAVHAF-LRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVAN 184

Query: 170 RVLLMHVRCGMMIDAR-------------------------------RLFDEMPERNLVS 198
            +L M+ +CG  + A+                                LFD+M + ++VS
Sbjct: 185 SLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVS 244

Query: 199 CNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQLHSCA 257
            N II G    G  + A   F  + +  S    + T  +++ A A  E + +GKQ+H+  
Sbjct: 245 WNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHI 304

Query: 258 LKM------GFGD---------------------------NVFVSCALIDMYSKCGSIED 284
           ++         G+                           NV    +L+D Y K G I+ 
Sbjct: 305 VRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDP 364

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+ +FD +  +  V W  +I GYA +G   +AL L+  M   G K +++T + ++ + + 
Sbjct: 365 ARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISS 424

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-KNVISWNA 403
           LASL+H KQ HA  +R      +   +AL+  YS+ G I+DAR +F+ +   ++ ++W +
Sbjct: 425 LASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTS 484

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           +I     HG G EA+ELFE+ML   ++P+H+T++ VLSAC+  GL E+G   F  M   H
Sbjct: 485 MILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVH 544

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            I+P + HYACMI+LLGR GLL+EA+  IR  P +     W +LL++CRV+  ++L K A
Sbjct: 545 NIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVA 604

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
           AEKL  ++P     Y+ L N  ++ GK ++AA+V ++++ K ++     SW+++K + H+
Sbjct: 605 AEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHI 664

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVA 642
           F   D  H Q   IY  + ++  EI K G++P+  ++L D++++ ++++L +HSEKLA+A
Sbjct: 665 FGVEDALHPQRDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIA 724

Query: 643 FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           F LINT   T ++I+++ R+C DCH+AI+ I+++  REI+VRDA+RFHHFKDG CSC DY
Sbjct: 725 FALINTPKHTTVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDY 784

Query: 703 W 703
           W
Sbjct: 785 W 785



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 137/531 (25%), Positives = 226/531 (42%), Gaps = 109/531 (20%)

Query: 134 DALISACIGLRSIREVKRVFSYM-LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           + L++  +   S  +  R+F  M L T F       N +L  H + G +  ARR+FDE+P
Sbjct: 52  NNLLNLYVKTGSSSDAHRLFDEMPLKTTFS-----WNTILSAHAKAGNLDSARRVFDEIP 106

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           + + VS   +I G    G +  A   FL +          TF  ++ + A  + + VGK+
Sbjct: 107 QPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKK 166

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCG-------------------------------S 281
           +HS  +K+G    V V+ +L++MY+KCG                                
Sbjct: 167 VHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQ 226

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY-YEMRDSGVKMDHFTFSMIIR 340
            + A  +FD+M++   V WN+II GY   GY   AL+ + + ++ S +K D FT   ++ 
Sbjct: 227 FDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLS 286

Query: 341 ICTRLASLEHAKQAHAGLVRHGF---------------------------------GLDI 367
            C    SL+  KQ HA +VR                                     L++
Sbjct: 287 ACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGTPSLNV 346

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
           +A ++L+D Y K G I+ AR +FD +  ++V++W A+I GY  +G   +A+ LF  M+  
Sbjct: 347 IAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIRE 406

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWE-------------------IFQSMSRDHKIKPR 468
           G +PN+ T  AVLS  S     + G +                   +    SR   IK  
Sbjct: 407 GPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDA 466

Query: 469 ------------AMHYACMIELLGREGLLDEAFALIRG---APFKTTKNMWAALLTACRV 513
                        + +  MI  L + GL +EA  L         K     +  +L+AC  
Sbjct: 467 RKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTH 526

Query: 514 NGNLELGKF---AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            G +E GK      + ++ +EP   S+Y  ++++   +G L+EA   IR +
Sbjct: 527 VGLVEQGKSYFNLMKNVHNIEPTS-SHYACMIDLLGRAGLLEEAYNFIRNM 576



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 149/313 (47%), Gaps = 15/313 (4%)

Query: 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL 317
           LK  F  N  +S      ++K G+++ A+ VFDE+ +  +V W T+I GY   G  + A+
Sbjct: 76  LKTTFSWNTILSA-----HAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAV 130

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG-FGLDIVANSALVDF 376
             +  M  SG+    FTF+ ++  C    +L+  K+ H+ +V+ G  G+  VANS L++ 
Sbjct: 131 HAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANS-LLNM 189

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           Y+K G    A+ VFD+M  K+  +WN +I+ +    + + A+ LF+QM      P+ V++
Sbjct: 190 YAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQM----TDPDIVSW 245

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL-LGREGLL--DEAFALIR 493
            ++++     G   R  E F  M +   +KP       ++     RE L    +  A I 
Sbjct: 246 NSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIV 305

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
            A       +  AL++    +G +E+     E + G     +  +  LL+ Y   G +  
Sbjct: 306 RADVDIAGAVGNALISMYAKSGAVEVAHRIVE-ITGTPSLNVIAFTSLLDGYFKIGDIDP 364

Query: 554 AAEVIRTLRRKGL 566
           A  +  +L+ + +
Sbjct: 365 ARAIFDSLKHRDV 377



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 32/133 (24%)

Query: 355 HAGLVRHGFG-LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN----------- 402
           HA +++HG   L +   + L++ Y K G   DA  +FD+M  K   SWN           
Sbjct: 35  HARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGN 94

Query: 403 --------------------ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
                                +I GY + G  + AV  F +M+ +G+ P   TF  VL++
Sbjct: 95  LDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLAS 154

Query: 443 CSRSGLSERGWEI 455
           C+ +   + G ++
Sbjct: 155 CAAAQALDVGKKV 167


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/612 (33%), Positives = 361/612 (58%), Gaps = 15/612 (2%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N     AL+LF I   E G    + T   +++AC  L+SI   K+V +Y++    + D
Sbjct: 135 VQNSHPLLALQLF-IKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFD 193

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
             + N +   + +   +  A + F  + E++++S   +I+   D+G    +   F+D+  
Sbjct: 194 TSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLS 253

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
           +       T  +++ A   +  + +G Q+HS ++K+G+G ++ +  +++ +Y KCG + +
Sbjct: 254 DGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIE 313

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYA-----------LHGYSEEALDLYYEMRDSGVKMDHF 333
           AQ +F+ M     V WN +IAG+A            H     AL ++ ++  SG+K D F
Sbjct: 314 AQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLF 373

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           TFS ++ +C+ L +LE  +Q H  +++ G   D+V  +ALV  Y+K G I+ A   F +M
Sbjct: 374 TFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEM 433

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             + +ISW ++I G+  HG  ++A++LFE M L G++PN VTF+ VLSACS +GL++   
Sbjct: 434 PSRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEAL 493

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
             F+ M + + IKP   H+AC+I++  R G ++EAF ++    F+  + +W+ L+  CR 
Sbjct: 494 YYFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRS 553

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACS 573
           +G  +LG +AAE+L  ++P+ +  YV LLN++ S+G+ K+ ++V + ++ + +  L   S
Sbjct: 554 HGKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWS 613

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLS 633
           WI +K++ + F   D+SH Q+ E+Y+ ++ ++ E+   GY P E   + + +E E+RVLS
Sbjct: 614 WISIKEKVYSFKPNDKSHCQSLEMYKLLETVLNEVKALGYEPIEDVEVIEKEENEERVLS 673

Query: 634 ---YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFH 690
               HSEKLA+AFGL+N    TP+++V+S  +C DCHN I+ I+++ GREIV+RD+ + H
Sbjct: 674 STVLHSEKLAIAFGLLNLPTATPIRVVKSITMCRDCHNFIRFISLLKGREIVIRDSKQLH 733

Query: 691 HFKDGMCSCGDY 702
            F +G CSCG Y
Sbjct: 734 KFLNGYCSCGGY 745



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 229/453 (50%), Gaps = 16/453 (3%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G  + SS Y  L+  CI      E + +  +++ TGF  DL++   ++ ++ +CG+M  A
Sbjct: 53  GTRIESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESA 112

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
            ++FD +P RN+ +   ++ G + +   L A  LF+ + E  +   + T   ++ A + L
Sbjct: 113 HKVFDNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSL 172

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
           + I  GKQ+H+  +K     +  +  +L   YSK   +E A   F  + EK  + W ++I
Sbjct: 173 QSIEFGKQVHAYLIKYHIDFDTSIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVI 232

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           +    +G +  +L  + +M   G+K + +T + ++  C  + +L+   Q H+  ++ G+G
Sbjct: 233 SSCCDNGQAARSLSFFMDMLSDGMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYG 292

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN-----------HGR 413
             I+  ++++  Y K G + +A+ +F+ M   N+++WNA+IAG+             H  
Sbjct: 293 SSILIKNSIMYLYLKCGWLIEAQKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKS 352

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
           G  A+ +F+++  +GM+P+  TF +VLS CS     E+G +I   + +   +    +  A
Sbjct: 353 GSTALAMFQKLYRSGMKPDLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTA 412

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG--NLELGKFAAEKLYGME 531
            ++ +  + G +D+A       P +T  + W +++T    +G     L  F   +L G++
Sbjct: 413 -LVSMYNKCGSIDKASKAFLEMPSRTMIS-WTSMITGFARHGLSQQALQLFEDMRLVGIK 470

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           P +++ +V +L+  + +G   EA      ++++
Sbjct: 471 PNQVT-FVGVLSACSHAGLADEALYYFELMQKQ 502


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/599 (35%), Positives = 347/599 (57%), Gaps = 8/599 (1%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGF-EPDLYMRNR 170
           EA+ L   ++ EG F     TY +++ AC  L ++ + + + + +L  G  + ++ + N 
Sbjct: 344 EAIHLLRRMDMEG-FGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNS 402

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           V+ M+ +CG    A  +F+ MP ++ VS N +I   + +  + +A  LF  +  E     
Sbjct: 403 VITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSN 462

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDN-VFVSCALIDMYSKCGSIEDAQGVF 289
             T  +++ A  GLE + + +Q+H+ A   GFG N   V  ++++MY++CGS+ DA+  F
Sbjct: 463 EFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAF 522

Query: 290 DEMSEKTTVGWNTIIAGYALH--GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           D + EK  V W+ I+A YA    G    A   + EM   G+K    TF   +  C  +A+
Sbjct: 523 DSLEEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMAT 582

Query: 348 LEHAKQAHAGLVRHGF-GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           LEH +  H      GF    +V  + +++ Y K G   DA+ VFD+M  K +ISWN+LI 
Sbjct: 583 LEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIV 642

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
            Y ++G   EA+   ++MLL G  P+  T +++L   S +GL ERG E F+S  +DH ++
Sbjct: 643 AYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLE 702

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM-WAALLTACRVNGNLELGKFAAE 525
           P +    C+++LL R+G LD A  LI  +P      + W  LL AC+  G+ + G   AE
Sbjct: 703 PSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAACKSYGDPQRGIRCAE 762

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
           +++ +EP+   ++VVL N+Y S G+  +A+ + + + R  ++  P CSWIE+    H F+
Sbjct: 763 RVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEPGCSWIELSGSVHEFI 822

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFG 644
           SG+  H + +EI   ++++ L + + GYVP+   ++ DV+E  ++ +LS HSE+LA+ FG
Sbjct: 823 SGESKHPKIREICEDLEKLTLRMREAGYVPDTTNVVHDVEEGDKEEILSRHSERLAIVFG 882

Query: 645 LINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           L++T     +++V++ R+C DCH A K+I+ V GREIVVRD+SRFHHFK G CSCGD+W
Sbjct: 883 LMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREIVVRDSSRFHHFKHGQCSCGDFW 941



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 222/448 (49%), Gaps = 6/448 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N  YREALELF  +++EG        +   + AC     +   +++ S ++ +G   ++ 
Sbjct: 36  NGHYREALELFTRMQWEG-TRPDKVVFVIALDACAASGELDHGRQIHSSVVGSGLTSNII 94

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N ++ M+ +C  +  A ++FD M  R++VS   ++A    +G + +A      +  E 
Sbjct: 95  ISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEG 154

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 TF T++   A L L+ +G+++H   +  G   +  +  AL+ MY  CGS +D +
Sbjct: 155 VKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMK 214

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VF  M + + + W T+IAG + +G  EE L ++ +M   GVK +  T+  ++ +C  L 
Sbjct: 215 SVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLD 274

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           +++  +   A ++   F    +  ++L+  Y + G ++ A+ + + M  ++V++WNA++ 
Sbjct: 275 AVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVT 334

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
               +G   EA+ L  +M + G   N VT+L+VL AC+      +G EI   +     ++
Sbjct: 335 ACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQ 394

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
                   +I + G+ G  + A ++    P K   + W A++ A   N   +    A E 
Sbjct: 395 REVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVS-WNAVINASVGNSKFQ---DALEL 450

Query: 527 LYGMEPEKL-SNYVVLLNIYNSSGKLKE 553
            +GME E L SN   LL++  + G L++
Sbjct: 451 FHGMELEGLRSNEFTLLSLLEACGGLED 478



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 173/343 (50%), Gaps = 2/343 (0%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+ +C  + DA  +FD +  +N+ S  M++A    +G Y EA  LF  +  E +      
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
           F   + A A    +  G+Q+HS  +  G   N+ +S +L++MY KC  +  A+ VFD M 
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGML 120

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
            +  V W  ++A YA +G   +AL+    M   GVK +  TF  I+ +C +L  L+  ++
Sbjct: 121 LRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRK 180

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            H  ++  G   D +  +ALV  Y   G  +D + VF +M   +V+ W  +IAG   +G+
Sbjct: 181 IHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQ 240

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
            EE + +F +M L G++ N VT+++++  C      + G E+  +   +       +   
Sbjct: 241 YEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEG-EMIDARILESPFCSSTLLAT 299

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
            +I L G+ G+LD A  L+    ++     W A++TAC  NG+
Sbjct: 300 SLISLYGQCGILDRAKGLLEHM-YQRDVVAWNAMVTACAQNGD 341



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 170/348 (48%), Gaps = 10/348 (2%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   V N ++++ALELF  +E E G      T  +L+ AC GL  ++  +++ +   + G
Sbjct: 435 INASVGNSKFQDALELFHGMELE-GLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGG 493

Query: 161 FEPD-LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS--GDYLEAFL 217
           F  +   + N V+ M+ RCG ++DA++ FD + E+ LV+ ++I+A    S  G    AF 
Sbjct: 494 FGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFK 553

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV-SCALIDMY 276
            F ++  E    G  TF + + A A +  +  G+ +H  A   GF +   V    +I+MY
Sbjct: 554 FFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMY 613

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
            KCGS  DA+ VFD+M EK  + WN++I  YA +G++ EAL    EM   G   D  T  
Sbjct: 614 GKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSV 673

Query: 337 MIIRICTRLASLEHA-KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH-VFDKML 394
            I+   +    LE   +   + +  HG          LVD  ++ G ++ A   +     
Sbjct: 674 SILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPA 733

Query: 395 CK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
           C+ + I+W  L+A   ++G  +  +   E++    + P H     VL+
Sbjct: 734 CQADTIAWMTLLAACKSYGDPQRGIRCAERVF--ELEPQHSGSFVVLA 779


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/632 (34%), Positives = 354/632 (56%), Gaps = 24/632 (3%)

Query: 80  LKESSLPDTQMKKPSAGICSQIEKL--VLNKRYREALELFEILEFEGGFDVGSSTYDALI 137
           L+  +LPD      S      +     +L    R  L    I  F+   +    +Y  L+
Sbjct: 91  LRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLL 150

Query: 138 SACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLV 197
              +    + E +R+F  M       D+     +L  + + G + +AR LFDEMP+RN+V
Sbjct: 151 GGLLDAGRVNEARRLFDEMPDR----DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVV 206

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257
           S   +I+G   +G+   A  LF    E   +    ++  M+     +  I  G    +  
Sbjct: 207 SWTAMISGYAQNGEVNLARKLF----EVMPERNEVSWTAML-----VGYIQAGHVEDAAE 257

Query: 258 LKMGFGDNVFVSC-ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
           L     ++   +C A++  + + G ++ A+ VF++M E+    W+ +I  Y  + +  EA
Sbjct: 258 LFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEA 317

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
           L  + EM   GV+ ++ +   I+ +C  LA L++ ++ HA ++R  F +D+ A SAL+  
Sbjct: 318 LSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITM 377

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           Y K G ++ A+ VF     K+++ WN++I GY  HG GE+A+ +F  M L GM P+ +T+
Sbjct: 378 YIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITY 437

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
           +  L+ACS +G  + G EIF SM+ +  I+P A HY+CM++LLGR GL++EAF LI+  P
Sbjct: 438 IGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMP 497

Query: 497 FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
            +    +W AL+ ACR++ N E+ + AA+KL  +EP     YV+L +IY S G+ ++A++
Sbjct: 498 VEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYVLLSHIYTSVGRWEDASK 557

Query: 557 VIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD----QSHVQTKEIYRKVDRMMLEISKHG 612
           + + +  + L   P CSWIE  K+ H+F SGD      H     I  K+D +++E    G
Sbjct: 558 MRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAILRILEKLDGLLME---SG 614

Query: 613 YVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           Y  +   +L D+D EQ+   L YHSE+ AVA+GL+   +  P++++++ R+C DCH+AIK
Sbjct: 615 YSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVMKNLRVCGDCHSAIK 674

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           LIA +T REIV+RDA+RFHHFKDG CSC DYW
Sbjct: 675 LIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 158/376 (42%), Gaps = 73/376 (19%)

Query: 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
           R G +  AR  F+ MP R   S N ++AG   +     A  LF  +        SR  A+
Sbjct: 29  RAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRM-------PSRDLAS 81

Query: 237 MIRASAGLELISVGKQLHSCAL-KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
                +GL L        + AL  + F  +V    +L+  Y + G + DA  +F +M E+
Sbjct: 82  YNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER 141

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             V +  ++ G    G   EA  L+ EM D                              
Sbjct: 142 NHVSYTVLLGGLLDAGRVNEARRLFDEMPDR----------------------------- 172

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
                     D+VA +A++  Y + GRI +AR +FD+M  +NV+SW A+I+GY  +G   
Sbjct: 173 ----------DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVN 222

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC- 474
            A +LFE M       N V++ A+L    ++G  E   E+F +M  +H +       AC 
Sbjct: 223 LARKLFEVMPER----NEVSWTAMLVGYIQAGHVEDAAELFNAMP-EHPVA------ACN 271

Query: 475 -MIELLGREGLLDEA---FALIRGAPFKTTKNMWAALLTACRVNGNL--ELGKFAAEKLY 528
            M+   G+ G++D A   F  +R    +     W+A++ A   N  L   L  F      
Sbjct: 272 AMMVGFGQRGMVDAAKTVFEKMR----ERDDGTWSAMIKAYEQNEFLMEALSTFREMLWR 327

Query: 529 GMEPEKLSNYVVLLNI 544
           G+ P    NY  +++I
Sbjct: 328 GVRP----NYPSVISI 339



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 103/247 (41%), Gaps = 61/247 (24%)

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM------ 424
           +A +   ++ G IE AR  F+ M  +   S+NAL+AGY  +   + A+ LF +M      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 425 ----LLNGMR-------------------PNHVTFLAVLSACSRSGLSERGWEIFQSMS- 460
               L++G+                    P+ V+F ++L    R GL      +FQ M  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 461 RDH------------------------KIKPR-AMHYACMIELLGREGLLDEAFALIRGA 495
           R+H                        ++  R  + +  M+    + G + EA AL    
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEA 554
           P +   + W A+++    NG + L    A KL+ + PE+   ++  +L  Y  +G +++A
Sbjct: 201 PKRNVVS-WTAMISGYAQNGEVNL----ARKLFEVMPERNEVSWTAMLVGYIQAGHVEDA 255

Query: 555 AEVIRTL 561
           AE+   +
Sbjct: 256 AELFNAM 262


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/581 (36%), Positives = 324/581 (55%), Gaps = 23/581 (3%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G DV  +T  +++  C    ++   K V S  + + FE  +   N +L M+ +CG +  A
Sbjct: 246 GIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGA 305

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
            R+F++M ERN+VS   +IAG    G    A +L   + +E          +++ A A  
Sbjct: 306 LRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARS 365

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             +  GK +H          N+FV  AL+DMY+KCGS+E A  VF  M  K  + WNT++
Sbjct: 366 GSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV 425

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
                                  +K D  T + I+  C  L++LE  K+ H  ++R+G+ 
Sbjct: 426 GE---------------------LKPDSRTMACILPACASLSALERGKEIHGYILRNGYS 464

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D    +ALVD Y K G +  AR +FD +  K+++SW  +IAGYG HG G EA+  F +M
Sbjct: 465 SDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEM 524

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
              G+ P+ V+F+++L ACS SGL E+GW  F  M  D  I+P+  HYACM++LL R G 
Sbjct: 525 RDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGN 584

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L +A+  I   P      +W ALL  CR+  ++EL +  AE+++ +EPE    YV+L NI
Sbjct: 585 LSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANI 644

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ-SHVQTKEIYRKVDR 603
           Y  + K +E   +   + +KGLR  P CSWIE+K + ++F+SG+  SH  +K+I   + +
Sbjct: 645 YAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKK 704

Query: 604 MMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           M  ++ + GY P+ K  L + DE Q++  L  HSEKLA+AFGL+       +++ ++ R+
Sbjct: 705 MRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRV 764

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH   K ++  T REIV+RD++RFHHFKDG CSC  +W
Sbjct: 765 CGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 133/519 (25%), Positives = 230/519 (44%), Gaps = 109/519 (21%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           + TY +++  C GL+S+ + K+V S + S     D  +  +++  +  CG + + RR+FD
Sbjct: 99  TKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFD 158

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFL----------------DLWEEFSDCGSRT 233
            M ++N+   N +++     GD+ E+  LF                 +L+++  D    +
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVIS 218

Query: 234 FATMIRA--SAGLE---------------------------------LISVGKQLHSCAL 258
           + +MI    S GL                                   +S+GK +HS A+
Sbjct: 219 WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAI 278

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
           K  F   +  S  L+DMYSKCG ++ A  VF++M E+  V W ++IAGY   G+S+ A+ 
Sbjct: 279 KSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAII 338

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378
           L  +M   GVK+D    + I+  C R  SL++ K  H  +  +    ++   +AL+D Y+
Sbjct: 339 LLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYA 398

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
           K G +E A  VF  M+ K++ISWN ++        GE             ++P+  T   
Sbjct: 399 KCGSMEGANSVFSTMVVKDIISWNTMV--------GE-------------LKPDSRTMAC 437

Query: 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPR------------------------------ 468
           +L AC+     ERG EI   + R+     R                              
Sbjct: 438 ILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD 497

Query: 469 AMHYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWAALLTACRVNGNLELG---KF 522
            + +  MI   G  G  +EA A    +R A  +  +  + ++L AC  +G LE G    +
Sbjct: 498 LVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFY 557

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
             +  + +EP KL +Y  ++++ + +G L +A + I TL
Sbjct: 558 IMKNDFNIEP-KLEHYACMVDLLSRTGNLSKAYKFIETL 595



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 131/280 (46%), Gaps = 51/280 (18%)

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
           S+  ++T+ ++++  AGL+ ++ GK++HS       G +  +   L+  Y+ CG +++ +
Sbjct: 95  SELETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGR 154

Query: 287 GVFDEMSEKTT------------------------------------------------- 297
            VFD M +K                                                   
Sbjct: 155 RVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDR 214

Query: 298 --VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             + WN++I+GY  +G +E  L +Y +M   G+ +D  T   ++  C    +L   K  H
Sbjct: 215 DVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVH 274

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
           +  ++  F   I  ++ L+D YSK G ++ A  VF+KM  +NV+SW ++IAGY   G  +
Sbjct: 275 SLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSD 334

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
            A+ L +QM   G++ + V   ++L AC+RSG  + G ++
Sbjct: 335 GAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 104/223 (46%), Gaps = 28/223 (12%)

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H  +LK  F   +F SC  + + +      D Q             +N  I  +   G 
Sbjct: 32  IHKPSLKTTFFSPIFRSCIPVRISATPTRTIDHQ----------VTDYNAKILHFCQLGD 81

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            E A++L    + S  +++  T+  ++++C  L SL   K+ H+ +  +  G+D      
Sbjct: 82  LENAMELVCMCQKS--ELETKTYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLK 139

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML---LNGM 429
           LV FY+  G +++ R VFD M  KNV  WN +++ Y   G  +E++ LF+ M+   + G 
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 430 RPNH-------------VTFLAVLSACSRSGLSERGWEIFQSM 459
           RP               +++ +++S    +GL+ERG  I++ M
Sbjct: 200 RPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQM 242


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/584 (37%), Positives = 346/584 (59%), Gaps = 9/584 (1%)

Query: 128  VGSSTYDAL--ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
            +  S + A+  +S+C  LR +   ++V    +  G + D  + N ++ M+  CG   ++ 
Sbjct: 472  ISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESW 531

Query: 186  RLFDEMPERNLVSCNMIIAGMIDS-GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
             +F+ M E ++VS N I+  M+ S     E+  +F ++          TF  ++ A + L
Sbjct: 532  EIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPL 591

Query: 245  ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTI 303
             ++ +GKQ+H+  LK G  ++  V  AL+  Y+K G ++  + +F  MS  +  V WN++
Sbjct: 592  SVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSM 651

Query: 304  IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
            I+GY  +G+ +E +D  + M  S   +D  TFS+++  C  +A+LE   + HA  +R   
Sbjct: 652  ISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQL 711

Query: 364  GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
              D+V  SAL+D YSK GRI+ A  VF+ M  KN  SWN++I+GY  HG GE+A+E+FE+
Sbjct: 712  ESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEE 771

Query: 424  MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
            M  NG  P+HVTF++VLSACS +GL +RG + F+ M  DH I P   HY+C+I+LLGR G
Sbjct: 772  MQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFE-MMEDHGILPHIEHYSCVIDLLGRAG 830

Query: 484  LLDEAFALIRGAPFKTTKNMWAALLTACRVNGN---LELGKFAAEKLYGMEPEKLSNYVV 540
             L +    I   P K    +W  +L ACR + +   ++LGK A+  L  +EP+   NYV+
Sbjct: 831  KLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPVNYVL 890

Query: 541  LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRK 600
              N Y ++G+ ++ A+    +    ++     SW+ +    H F++GD+SH  TKEIY K
Sbjct: 891  ASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLGDGVHTFIAGDRSHPNTKEIYEK 950

Query: 601  VDRMMLEISKHGYVP-EEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQS 659
            ++ ++ +I   GYVP  E  L    +E ++ +LSYHSEKLAVAF L  +S   P++I+++
Sbjct: 951  LNFLIQKIKNAGYVPMTEFALYDLEEENKEELLSYHSEKLAVAFVLTRSSSDVPIRIMKN 1010

Query: 660  HRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             R+C DCH A + I+ +  R+I++RD+ RFHHF+DG CSCGDYW
Sbjct: 1011 LRVCGDCHTAFRYISQIVCRQIILRDSIRFHHFEDGKCSCGDYW 1054



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/394 (27%), Positives = 197/394 (50%), Gaps = 9/394 (2%)

Query: 132 TYDALISAC-IGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           T+ +LI+A  +   S   + +VF+ +L +G   DLY+ + ++    R GM+ +A+ +F  
Sbjct: 271 TFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFIN 330

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL---- 246
           + ERN V+ N +I G++      EA  +F+   + F    + TF  ++ A A   +    
Sbjct: 331 LKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFV-VNTDTFVVLLSAVAEFSIPEDG 389

Query: 247 ISVGKQLHSCALKMGFGD-NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
           +  G+++H   L+ G  D  + +S  L++MY+KCG+I+ A  VF  +  +  V WNTII+
Sbjct: 390 LMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIIS 449

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
               +G+ E A+  Y  MR   +   +F     +  C  L  L   +Q H   V+ G  L
Sbjct: 450 VLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDL 509

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA-GYGNHGRGEEAVELFEQM 424
           D   ++ALV  Y   G   ++  +F+ M   +++SWN+++     +H    E+VE+F  M
Sbjct: 510 DTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNM 569

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
           + +G+ PN VTF+ +LSA S   + E G ++   + +   I+  A+  A M     + G 
Sbjct: 570 MRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALM-SCYAKSGD 628

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           +D    L      +     W ++++    NG+L+
Sbjct: 629 MDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQ 662



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 178/365 (48%), Gaps = 27/365 (7%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           +R+   ++  G   DL++ N ++ ++ +   +  AR++FD M ERN VS   +++G + S
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLS 135

Query: 210 GDYLEAFLLFLD-LWE--EFSDCGSRTFATMIRA--SAGLELISVGKQLHSCALKMGFGD 264
           G   EAF +F   LWE  EFS     TF +++RA   AG +L++   Q+H    K  +  
Sbjct: 136 GITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYAS 195

Query: 265 NVFVSCALIDMYSKC--GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
           N  V  ALI MY  C  G    AQ VFD    +  + WN +++ YA  GY      L+  
Sbjct: 196 NTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMA 255

Query: 323 M--RDSGVKM--DHFTFSMIIRICTRLASLEHA--KQAHAGLVRHGFGLDIVANSALVDF 376
           M   DS +++  +  TF  +I   T L+S       Q  A +++ G   D+   SALV  
Sbjct: 256 MLHDDSAIELRPNEHTFGSLI-TATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSA 314

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV-- 434
           +++ G +++A+ +F  +  +N ++ N LI G       EEAV +F      G R + V  
Sbjct: 315 FARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFM-----GTRDSFVVN 369

Query: 435 --TFLAVLSACSRSGLSE----RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
             TF+ +LSA +   + E    RG E+   + R   I  +      ++ +  + G +D+A
Sbjct: 370 TDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKA 429

Query: 489 FALIR 493
             + R
Sbjct: 430 SRVFR 434


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 223/613 (36%), Positives = 352/613 (57%), Gaps = 26/613 (4%)

Query: 101 IEKLVLNKRYREALELFEILEF-EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           I + V  +   EA+ELF  L+F E GF+    T  ++ISAC  L S+R   ++ S  L  
Sbjct: 226 ISRYVQGECAEEAVELF--LDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRM 283

Query: 160 GFEPDLYMRNRVLLMHVRC--GMMID-ARRLFDEMPERNLVSCNMIIAGMIDSG-DYLEA 215
           G   D  +   ++ M+ +   G  +D A ++F+ MP+ +++S   +I+G + SG    + 
Sbjct: 284 GLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKV 343

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
             LF ++  E       T+++++++ A +     G+Q+H+  +K        V  AL+ M
Sbjct: 344 MALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSM 403

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD---- 331
           Y++ G +E+A+ VF+++ E++ +   T            E  D   + R   V+MD    
Sbjct: 404 YAESGCMEEARRVFNQLYERSMIPCIT------------EGRDFPLDHRI--VRMDVGIS 449

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
             TF+ +I     +  L   +Q HA  ++ GFG D   +++LV  YS+ G +EDA   F+
Sbjct: 450 SSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFN 509

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
           ++  +NVISW ++I+G   HG  E A+ LF  M+L G++PN VT++AVLSACS  GL   
Sbjct: 510 ELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVRE 569

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
           G E F+SM RDH + PR  HYACM++LL R G++ EA   I   P K    +W  LL AC
Sbjct: 570 GKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGAC 629

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           R + N+E+G+  A+ +  +EP   + YV+L N+Y  +G   E A +   +R   L     
Sbjct: 630 RSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETG 689

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQR 630
            SW+EV+   H F +GD SH + ++IY K+D ++ +I   GYVP+   +L D+ DE +++
Sbjct: 690 LSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYVPDTSIVLHDMSDELKEQ 749

Query: 631 VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFH 690
            L  HSEK+AVAFGLI TS   P++I ++ R+C DCH+AIK ++  T REI++RD++RFH
Sbjct: 750 YLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIKYMSKATRREIILRDSNRFH 809

Query: 691 HFKDGMCSCGDYW 703
             KDG CSCG+YW
Sbjct: 810 RMKDGECSCGEYW 822



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 171/335 (51%), Gaps = 8/335 (2%)

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE-RNLVSCNMIIAGMIDSGDYLEAFLLF 219
            + D  + N +L ++ RCG +  AR +FD M   R++VS   + + +  +G    + LL 
Sbjct: 80  LDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLI 139

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCAL-KMG-FGDNVFVSCALIDMYS 277
            ++ E      + T      A    EL  +   +    + KMG +G +V V  ALIDM +
Sbjct: 140 GEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLA 199

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           + G +  A+ VFD + EKT V W  +I+ Y     +EEA++L+ +  + G + D +T S 
Sbjct: 200 RNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSS 259

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK--WGRIED-ARHVFDKML 394
           +I  CT L S+    Q H+  +R G   D   +  LVD Y+K   G+  D A  VF++M 
Sbjct: 260 MISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMP 319

Query: 395 CKNVISWNALIAGYGNHGRGEEAV-ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             +VISW ALI+GY   G  E  V  LF +ML   ++PNH+T+ ++L +C+     + G 
Sbjct: 320 KNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGR 379

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           ++   + + ++     +  A ++ +    G ++EA
Sbjct: 380 QVHAHVIKSNQASAHTVGNA-LVSMYAESGCMEEA 413


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/508 (38%), Positives = 305/508 (60%), Gaps = 1/508 (0%)

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256
           VS N +I G +  G   +A   F  +          T  +++ + A ++++     +H  
Sbjct: 7   VSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCL 66

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
            +K GF     V+ ALIDMY+K G ++ A  VF +M +K  V W +++ GY+ +G  EEA
Sbjct: 67  IIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEA 126

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
           + L+ +MR SGV  D    + ++  C  L  ++  +Q HA LV+ G    +  +++LV  
Sbjct: 127 IKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTM 186

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           Y+K G I DA   FD M  ++VISW ALI GY  +GRG+ +++ ++QM+  G +P+++TF
Sbjct: 187 YAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITF 246

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
           + +L ACS +GL   G   F++M + + IKP   HYACMI+LLGR G L EA  L+    
Sbjct: 247 IGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMV 306

Query: 497 FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
                 +W ALL ACRV+  LELG+ AA+ L+ +EP     YV+L N+Y+++GK ++AA 
Sbjct: 307 VAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAAR 366

Query: 557 VIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPE 616
           + R +R +G+   P  SWIE   +   F+S D++H    EIY K+D +++ I + GYVP+
Sbjct: 367 IRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVPD 426

Query: 617 EKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAM 675
               L D D++ + + L+YHSEKLAVAFGL+      P++I ++ R+C DCH A+K  + 
Sbjct: 427 MSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKYTSK 486

Query: 676 VTGREIVVRDASRFHHFKDGMCSCGDYW 703
           V  R I++RD++ FHHF +G CSCGDYW
Sbjct: 487 VYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 96/206 (46%), Gaps = 3/206 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N  Y EA++LF  +   G +        +++SAC  L  +   +++ + ++ +G E  L 
Sbjct: 120 NGSYEEAIKLFCKMRISGVYP-DQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLS 178

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N ++ M+ +CG ++DA R FD MP R+++S   +I G   +G    +   +  +    
Sbjct: 179 VDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATG 238

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKM-GFGDNVFVSCALIDMYSKCGSIEDA 285
           +     TF  ++ A +   L+  G+       K+ G          +ID+  + G + +A
Sbjct: 239 TKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEA 298

Query: 286 QGVFDEM-SEKTTVGWNTIIAGYALH 310
           +G+ ++M      V W  ++A   +H
Sbjct: 299 KGLLNQMVVAPDAVVWKALLAACRVH 324


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/610 (35%), Positives = 350/610 (57%), Gaps = 9/610 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N    + L +F +     G ++  +T  ++ + C   R I   + V S  + 
Sbjct: 115 SIINGYVSNGLAEKGLSVF-VQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVK 173

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
             F  +    N +L M+ +CG +  A+ +F EM +R++VS   +IAG    G   EA  L
Sbjct: 174 ACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKL 233

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F ++ EE       T   ++   A   L+  GK++H    +   G ++FVS AL+DMY+K
Sbjct: 234 FEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAK 293

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY-YEMRDSGVKMDHFTFSM 337
           CGS+++A+ VF EM  K  + WNTII GY+ + Y+ EAL L+   + +     D  T + 
Sbjct: 294 CGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVAC 353

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           ++  C  L++ +  ++ H  ++R+G+  D    ++LVD Y+K G +  A  +FD +  K+
Sbjct: 354 VLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKD 413

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           ++SW  +IAGYG HG G+EA+ LF QM   G+  + ++F+++L ACS SGL + GW  F 
Sbjct: 414 LVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFN 473

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
            M  + KI+P   HYAC++++L R G L +A+  I   P      +W ALL  CR++ ++
Sbjct: 474 IMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDV 533

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
           +L +  AEK++ +EPE    YV++ NIY  + K ++   + + + ++GLR  P CSWIE+
Sbjct: 534 KLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEI 593

Query: 578 KKQPHVFLSGDQSHVQTKEI---YRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLS 633
           K + ++F++GD S+ +T+ I    RKV   M+E    GY P  K  L D +E E +  L 
Sbjct: 594 KGRVNIFVAGDSSNPETENIEAFLRKVRARMIE---EGYSPLTKYALIDAEEMEKEEALC 650

Query: 634 YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
            HSEKLA+A G+I++     +++ ++ R+C DCH   K ++ +T REIV+RD++RFH FK
Sbjct: 651 GHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFK 710

Query: 694 DGMCSCGDYW 703
           DG CSC  +W
Sbjct: 711 DGHCSCRGFW 720



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 128/445 (28%), Positives = 229/445 (51%), Gaps = 10/445 (2%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G ++ S T+  +  +   LRS+   +++  ++L +GF     + N ++  +++   +  A
Sbjct: 39  GVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSA 98

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R++FDEM ER+++S N II G + +G   +   +F+ +     +    T  ++    A  
Sbjct: 99  RKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADS 158

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
            LIS+G+ +HS  +K  F         L+DMYSKCG ++ A+ VF EMS+++ V + ++I
Sbjct: 159 RLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMI 218

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           AGYA  G + EA+ L+ EM + G+  D +T + ++  C R   L+  K+ H  +  +  G
Sbjct: 219 AGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLG 278

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            DI  ++AL+D Y+K G +++A  VF +M  K++ISWN +I GY  +    EA+ LF  +
Sbjct: 279 FDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLF-NL 337

Query: 425 LLNGMR--PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA-CMIELLGR 481
           LL   R  P+  T   VL AC+     ++G EI   + R+     R  H A  ++++  +
Sbjct: 338 LLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVDMYAK 395

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVN--GNLELGKFAAEKLYGMEPEKLSNYV 539
            G L  A  L      K   + W  ++    ++  G   +  F   +  G+E +++S +V
Sbjct: 396 CGALLLAHMLFDDIASKDLVS-WTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEIS-FV 453

Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRK 564
            LL   + SG + E       +R +
Sbjct: 454 SLLYACSHSGLVDEGWRFFNIMRHE 478



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 150/267 (56%), Gaps = 4/267 (1%)

Query: 188 FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI 247
           FDE+     +  N+++  +  SGD+  +  LF  +     +  S TF+ + ++ + L  +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
             G+QLH   LK GFG+   V  +L+  Y K   ++ A+ VFDEM+E+  + WN+II GY
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC--TRLASLEHAKQAHAGLVRHGFGL 365
             +G +E+ L ++ +M  SG+++D  T   +   C  +RL SL   +  H+  V+  F  
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISL--GRAVHSIGVKACFSR 178

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           +    + L+D YSK G ++ A+ VF +M  ++V+S+ ++IAGY   G   EAV+LFE+M 
Sbjct: 179 EDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEME 238

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERG 452
             G+ P+  T  AVL+ C+R  L + G
Sbjct: 239 EEGISPDVYTVTAVLNCCARYRLLDEG 265


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/559 (38%), Positives = 326/559 (58%), Gaps = 38/559 (6%)

Query: 179 GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMI 238
           G +  AR +F+++P     +CN II G  +     +A L +  +  +  D    TF ++ 
Sbjct: 26  GSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLF 85

Query: 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV 298
           ++     ++  GKQLH  + K+GF  + ++   L++MYS CG +  A+ VFD+M  K+ V
Sbjct: 86  KSCG---VLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVV 142

Query: 299 GWNTIIAGYA---------------------------LHGYSE-----EALDLYYEMRDS 326
            W T+I  YA                           ++G+ E     EAL L+ EM+ S
Sbjct: 143 SWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLS 202

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           GVK D  T + ++  CT L +LE  K  H  + +    +D+   +ALVD Y+K G IE A
Sbjct: 203 GVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESA 262

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
             VF +M  K+V++W ALI G    G+G +A+ELF +M ++ ++P+ +TF+ VL+ACS +
Sbjct: 263 MRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHA 322

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           GL   G   F SM   + I+P   HY CM+++LGR G + EA  LI+  P      +   
Sbjct: 323 GLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVG 382

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR-RKG 565
           LL+ACR++GNL + + AA++L  ++P+    YV+L NIY SS K  EAA+ +R L   + 
Sbjct: 383 LLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIY-SSMKNWEAAKKMRELMVERN 441

Query: 566 LRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD 625
           ++  P CS IEV    H F+ GD SH Q+ EIY  +D MM  +   GYVP++  +L D+D
Sbjct: 442 IKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMD 501

Query: 626 EQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVR 684
           E+E +  LS HSEKLA+AFGL++T+  TP+++V++ R+C DCH+A+K I+ V  REI+VR
Sbjct: 502 EKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVR 561

Query: 685 DASRFHHFKDGMCSCGDYW 703
           D +RFHHF  G CSC D+W
Sbjct: 562 DRNRFHHFTKGSCSCRDFW 580



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 176/393 (44%), Gaps = 70/393 (17%)

Query: 88  TQMKKPSAGICSQIEKLVLNKRY-REALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
            Q+  P+   C+ I +   NK   R+A+  ++++  +G  D    T+ +L  +C     +
Sbjct: 36  NQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQG-LDPDRFTFPSLFKSC---GVL 91

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVS-------- 198
            E K++  +    GF  D Y++N ++ M+  CG ++ AR++FD+M  +++VS        
Sbjct: 92  CEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAY 151

Query: 199 -----------------------C-NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF 234
                                  C N++I G ++  DY EA  LF ++          T 
Sbjct: 152 AQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTM 211

Query: 235 ATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE 294
           A+++ A   L  + +GK LH    K     +V +  AL+DMY+KCGSIE A  VF EM E
Sbjct: 212 ASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPE 271

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
           K  + W  +I G A+ G   +AL+L++EM+ S VK D  TF  ++  C+           
Sbjct: 272 KDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACS----------- 320

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414
           HAGLV  G               +K+G      H            +  ++   G  GR 
Sbjct: 321 HAGLVNEGIAY-------FNSMPNKYGIQPSIEH------------YGCMVDMLGRAGRI 361

Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
            EA +L + M    M P++   + +LSAC   G
Sbjct: 362 AEAEDLIQNM---PMAPDYFVLVGLLSACRIHG 391


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 198/573 (34%), Positives = 329/573 (57%), Gaps = 1/573 (0%)

Query: 132  TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            TY +++  CI L  +   +++ S ++ T F+ + Y+ + ++ M+ + G +  A  +    
Sbjct: 475  TYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 534

Query: 192  PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
              +++VS   +IAG        +A   F  + +             + A AGL+ +  G+
Sbjct: 535  AGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQ 594

Query: 252  QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            Q+H+ A   GF  ++    AL+ +YSKCG+IE+A   F++      + WN +++G+   G
Sbjct: 595  QIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSG 654

Query: 312  YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             +EEAL ++  M   G+  ++FTF   ++  +  A+++  KQ HA + + G+  +    +
Sbjct: 655  NNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCN 714

Query: 372  ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
            A++  Y+K G I DA+  F ++  KN +SWNA+I  Y  HG G EA++ F+QM+ + +RP
Sbjct: 715  AIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRP 774

Query: 432  NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
            NHVT + VLSACS  GL ++G E F+SM+ ++ + P+  HY C++++L R GLL  A   
Sbjct: 775  NHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDF 834

Query: 492  IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
            I   P +    +W  LL+AC V+ N+E+G+FAA  L  +EPE  + YV+L N+Y    K 
Sbjct: 835  ILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKW 894

Query: 552  KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
                   + ++ KG++  P  SWIEVK   H F  GDQ+H    EI+     +    S+ 
Sbjct: 895  DARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEI 954

Query: 612  GYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
            GYV +  +LL ++  EQ+   +  HSEKLA++FGL++     P+ ++++ R+C DCH+ I
Sbjct: 955  GYVQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPATMPINVMKNLRVCNDCHDWI 1014

Query: 671  KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            K ++ V+ REI+VRDA RFHHF+ G CSC DYW
Sbjct: 1015 KFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 214/439 (48%), Gaps = 13/439 (2%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           + +++SAC  + S+   +++   +L  GF  D Y+ N ++ ++   G +I A  +F  M 
Sbjct: 274 FSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMS 333

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           +R+ V+ N +I G+   G   +A  LF  +  +  +  S T A+++ A +    +  G+Q
Sbjct: 334 QRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQ 393

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LH+   K+GF  N  +  AL+++Y+KC  IE A   F E   +  V WN ++  Y L   
Sbjct: 394 LHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDD 453

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
              +  ++ +M+   +  + +T+  I++ C RL  LE  +Q H+ +++  F L+    S 
Sbjct: 454 LRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSV 513

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D Y+K G+++ A  +  +   K+V+SW  +IAGY  +   ++A+  F QML  G+R +
Sbjct: 514 LIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSD 573

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            V     +SAC+     + G +I                 A ++ L  + G ++EA+   
Sbjct: 574 EVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNA-LVTLYSKCGNIEEAY--- 629

Query: 493 RGAPFKTTKN----MWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYN 546
               F+ T+      W AL++  + +GN E  L  FA     G++    + +   +   +
Sbjct: 630 --LAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFT-FGSAVKAAS 686

Query: 547 SSGKLKEAAEVIRTLRRKG 565
            +  +K+  +V   + + G
Sbjct: 687 ETANMKQGKQVHAVITKTG 705



 Score =  167 bits (422), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 123/487 (25%), Positives = 229/487 (47%), Gaps = 46/487 (9%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +A+ELF+ ++ +G  +  S+T  +L+ AC    ++   +++ +Y    GF  +  +   +
Sbjct: 355 KAMELFKRMQLDG-LEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGAL 413

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA--GMIDSGDYLEAFLLFLDLWEEFSDC 229
           L ++ +C  +  A   F E    N+V  N+++   G++D  D   +F +F  +  E    
Sbjct: 414 LNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLD--DLRNSFRIFRQMQIEEIVP 471

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              T+ ++++    L  + +G+Q+HS  +K  F  N +V   LIDMY+K G ++ A  + 
Sbjct: 472 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDIL 531

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
              + K  V W T+IAGY  + + ++AL  + +M D G++ D    +  +  C  L +L+
Sbjct: 532 IRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALK 591

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             +Q HA     GF  D+   +ALV  YSK G IE+A   F++    + I+WNAL++G+ 
Sbjct: 592 EGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQ 651

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI-------------- 455
             G  EEA+ +F +M   G+  N+ TF + + A S +   ++G ++              
Sbjct: 652 QSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETE 711

Query: 456 ---------------------FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
                                F  +S  +++   AM  A      G E L  ++F  +  
Sbjct: 712 VCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEAL--DSFDQMIH 769

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKL 551
           +  +        +L+AC   G ++ G    E +   YG+ P K  +YV ++++   +G L
Sbjct: 770 SNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAP-KPEHYVCVVDMLTRAGLL 828

Query: 552 KEAAEVI 558
             A + I
Sbjct: 829 SRAKDFI 835



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 125/471 (26%), Positives = 227/471 (48%), Gaps = 38/471 (8%)

Query: 125 GFDVGSSTYDALISACIGLR-SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183
           G      T   L+  C+    S+ E +++ S +L  GF+ +  +  ++L  ++  G +  
Sbjct: 62  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDG 121

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A ++FDEMPER + + N +I  +       + F LF  +  E       TF+ ++ A  G
Sbjct: 122 ALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRG 181

Query: 244 LEL-ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
             +   V +Q+H+  +  G G +  V   LID+YS+ G ++ A+ VFD +  K    W  
Sbjct: 182 GSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVA 241

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I+G + +    EA+ L+ +M   G+    + FS ++  C ++ SLE  +Q H  +++ G
Sbjct: 242 MISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLG 301

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
           F  D    +ALV  Y   G +  A H+F  M  ++ +++N LI G    G GE+A+ELF+
Sbjct: 302 FSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 361

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR-----DHKIK----------- 466
           +M L+G+ P+  T  +++ ACS  G    G ++    ++     + KI+           
Sbjct: 362 RMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCS 421

Query: 467 --PRAMHYACMIE---------LLGREGLLDE---AFALIRGAPFK---TTKNMWAALLT 509
               A++Y    E         +L   GLLD+   +F + R    +     +  + ++L 
Sbjct: 422 DIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK 481

Query: 510 ACRVNGNLELGKFAAEKLYGMEPEKLSNYV--VLLNIYNSSGKLKEAAEVI 558
            C   G+LELG+    ++     + L+ YV  VL+++Y   GKL  A +++
Sbjct: 482 TCIRLGDLELGEQIHSQIIKTSFQ-LNAYVCSVLIDMYAKLGKLDTAWDIL 531



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 92/201 (45%), Gaps = 3/201 (1%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL +F  +  EG  D  + T+ + + A     ++++ K+V + +  TG++ +  + N +
Sbjct: 658 EALRVFARMNREG-IDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAI 716

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG + DA++ F E+  +N VS N +I      G   EA   F  +         
Sbjct: 717 ISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNH 776

Query: 232 RTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
            T   ++ A + + L+  G +   S   + G          ++DM ++ G +  A+    
Sbjct: 777 VTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFIL 836

Query: 291 EMS-EKTTVGWNTIIAGYALH 310
           EM  E   + W T+++   +H
Sbjct: 837 EMPIEPDALVWRTLLSACVVH 857


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/539 (37%), Positives = 319/539 (59%), Gaps = 19/539 (3%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A ++F      N+     +I G++ S  Y +   L+  +        S    ++++A   
Sbjct: 83  ASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSYAVTSVLKACGC 142

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE--------- 294
              +  G+++HS  LK+G   N  +   LI++Y KCG+ EDA+ VFDEM E         
Sbjct: 143 HLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVM 202

Query: 295 ---------KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
                    K TV W  +I G   +G S  AL+++  M+   V  +  T   ++  C+ L
Sbjct: 203 INYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSEL 262

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
            +L+  +   + + +H   L+     AL++ YS+ G I++A+ VF++M  KNVI++N++I
Sbjct: 263 GALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMI 322

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
            G+  HG+  EAVELF  ++  G  P+ VTF+ VL+ACS  GL+E G+EIF SM++D+ I
Sbjct: 323 MGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGI 382

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
           +P+  HY CM++LLGR G L+EA++ IR         M  ALL+AC+++GNLEL +  A+
Sbjct: 383 EPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAK 442

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
            L   +      Y++L N Y+SSGK KEAAEV   +R +G+   P CS IEV  + H FL
Sbjct: 443 SLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEIHEFL 502

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFG 644
            GD  H Q ++IY+K++ +   +   GY P  + +L D+++ E+   L+ HSE+LA+ +G
Sbjct: 503 LGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWALAIHSERLAICYG 562

Query: 645 LINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           LI+T   T L++V++ R+C DCH  IKLI+ +T R+IVVRD +RFHHF++G+CSCGDYW
Sbjct: 563 LISTKPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGVCSCGDYW 621



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/383 (26%), Positives = 187/383 (48%), Gaps = 24/383 (6%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I+ LVL+  Y + + L+  +         S    +++ AC    +++E + V S +L  G
Sbjct: 102 IDGLVLSCYYTDGIHLYYQM-INSSLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLG 160

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA---------------- 204
              +  +R +++ ++ +CG   DARR+FDEMPER++V+  ++I                 
Sbjct: 161 LSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAM 220

Query: 205 --GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
             G++ +G+   A  +F ++  E       T   ++ A + L  + +G+ + S   K   
Sbjct: 221 IDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRI 280

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             N FV  ALI+MYS+CG I++AQ VF++M EK  + +N++I G+ALHG S EA++L+  
Sbjct: 281 ELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRG 340

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQA-HAGLVRHGFGLDIVANSALVDFYSKWG 381
           +   G      TF  ++  C+     E   +  H+    +G    I     +VD   + G
Sbjct: 341 LIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLG 400

Query: 382 RIEDARHVFDKML--CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
           R+E+A + F +M+    + +   AL++    HG  E A E   + L+     +  T++ +
Sbjct: 401 RLEEA-YSFIRMMKVAPDHVMLGALLSACKIHGNLELA-ERVAKSLVACKNADSGTYILL 458

Query: 440 LSACSRSGLSERGWEIFQSMSRD 462
            +A S SG  +   E+  +M  +
Sbjct: 459 SNAYSSSGKWKEAAEVRTNMREE 481



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 151/351 (43%), Gaps = 57/351 (16%)

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
           FV   L+ + S   SI  A  +F          +  +I G  L  Y  + + LYY+M +S
Sbjct: 65  FVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINS 124

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
            +  D +  + +++ C    +L+  ++ H+ +++ G   +      L++ Y K G  EDA
Sbjct: 125 SLVPDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDA 184

Query: 387 RHVFDKMLCKNVIS------------------WNALIAGYGNHGRGEEAVELFEQMLLNG 428
           R VFD+M  ++V++                  W A+I G   +G    A+E+F  M    
Sbjct: 185 RRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQRED 244

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           + PN VT + VLSACS  G  + G  +   M + H+I+        +I +  R G +DEA
Sbjct: 245 VMPNEVTIVCVLSACSELGALQLGRWVRSYMDK-HRIELNHFVGGALINMYSRCGDIDEA 303

Query: 489 ---------------------FA----------LIRG---APFKTTKNMWAALLTACRVN 514
                                FA          L RG     F  +   +  +L AC   
Sbjct: 304 QRVFEQMKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHG 363

Query: 515 GNLELG---KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           G  ELG     +  K YG+EP+ + +Y  ++++    G+L+EA   IR ++
Sbjct: 364 GLAELGFEIFHSMAKDYGIEPQ-IEHYGCMVDLLGRLGRLEEAYSFIRMMK 413



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/222 (27%), Positives = 108/222 (48%), Gaps = 7/222 (3%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDV--GSSTYDALISACIGLRSIREVKRVFSYM 156
           + I+ LV N     ALE+F  ++ E   DV     T   ++SAC  L +++  + V SYM
Sbjct: 219 AMIDGLVRNGESNRALEVFRNMQRE---DVMPNEVTIVCVLSACSELGALQLGRWVRSYM 275

Query: 157 LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF 216
                E + ++   ++ M+ RCG + +A+R+F++M E+N+++ N +I G    G  +EA 
Sbjct: 276 DKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAV 335

Query: 217 LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL-HSCALKMGFGDNVFVSCALIDM 275
            LF  L ++     S TF  ++ A +   L  +G ++ HS A   G    +     ++D+
Sbjct: 336 ELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDL 395

Query: 276 YSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEA 316
             + G +E+A      M      V    +++   +HG  E A
Sbjct: 396 LGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELA 437


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 222/610 (36%), Positives = 344/610 (56%), Gaps = 7/610 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N+R+  AL  F  +  E        T+  +  A   L      K++ +  L 
Sbjct: 79  SLISGCVHNRRFTSALLHFSNMRRECVLP-NDFTFPCVFKASASLHMPVTGKQLHALALK 137

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G   D+++      M+ + G+  +AR +FDEMP RNL + N  ++  +  G  L+A   
Sbjct: 138 GGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAA 197

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F        +  + TF   + A A +  + +G+QLH   ++  + ++V V   LID Y K
Sbjct: 198 FKKFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGK 257

Query: 279 CGSIEDAQGVFDEMSE--KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
           CG I  ++ VF  +    +  V W +++A    +   E A  ++ + R   V+   F  S
Sbjct: 258 CGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQARKE-VEPTDFMIS 316

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            ++  C  L  LE  +  HA  ++     +I   SALVD Y K G IE A  VF +M  +
Sbjct: 317 SVLSACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPER 376

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLN--GMRPNHVTFLAVLSACSRSGLSERGWE 454
           N+++WNA+I GY + G  + A+ LF++M     G+  ++VT ++VLSACSR+G  ERG +
Sbjct: 377 NLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQ 436

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
           IF+SM   + I+P A HYAC+++LLGR GL+D A+  I+  P   T ++W ALL AC+++
Sbjct: 437 IFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGALLGACKMH 496

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
           G  +LGK AAEKL+ ++P+   N+VV  N+  S+G+ +EA  V + +R  G++     SW
Sbjct: 497 GKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGIKKNVGYSW 556

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LS 633
           + VK + HVF + D  H +  EI   + ++  E+ K GYVP+    L D++E+E+   + 
Sbjct: 557 VAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLFDLEEEEKASEVW 616

Query: 634 YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
           YHSEK+A+AFGLI      P++I ++ RIC DCH+AIK I+ + GREI+VRD +RFH FK
Sbjct: 617 YHSEKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIVGREIIVRDNNRFHRFK 676

Query: 694 DGMCSCGDYW 703
           DG CSC DYW
Sbjct: 677 DGWCSCKDYW 686



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 199/419 (47%), Gaps = 9/419 (2%)

Query: 150 KRVFSYMLSTGFEP-DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
           + V +++L T   P   ++ N ++ M+ +  +   A+ +      R +V+   +I+G + 
Sbjct: 27  RAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTSLISGCVH 86

Query: 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
           +  +  A L F ++  E       TF  + +ASA L +   GKQLH+ ALK G   +VFV
Sbjct: 87  NRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGNILDVFV 146

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
            C+  DMYSK G   +A+ +FDEM  +    WN  ++     G   +A+  + +      
Sbjct: 147 GCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKKFLCVDG 206

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
           + +  TF   +  C  + SLE  +Q H  +VR  +  D+   + L+DFY K G I  +  
Sbjct: 207 EPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGDIVSSEL 266

Query: 389 VFDKMLC--KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           VF ++    +NV+SW +L+A    +   E A  +F Q     + P      +VLSAC+  
Sbjct: 267 VFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQA-RKEVEPTDFMISSVLSACAEL 325

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           G  E G  +  +++    ++      + +++L G+ G ++ A  + R  P +     W A
Sbjct: 326 GGLELGRSV-HALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPERNLVT-WNA 383

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS---SGKLKEAAEVIRTLR 562
           ++      G++++     +++         +YV L+++ ++   +G ++   ++  ++R
Sbjct: 384 MIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQIFESMR 442


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/596 (34%), Positives = 337/596 (56%), Gaps = 3/596 (0%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R  EA+ LF +   + G    SS +  LI +      +   K++ S ++  GF  ++ + 
Sbjct: 172 RIDEAVRLF-LRMLDLGITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLIRIGFAANISIE 230

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
             +  M+V+CG +  A    ++M  +N V+C  ++ G   +    +A LLF  +  E  +
Sbjct: 231 TLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMISEGVE 290

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
                F+ +++A A L  +  GKQ+HS  +K+G    V V   L+D Y KC   E A+  
Sbjct: 291 LDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQA 350

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F+ + E     W+ +IAGY   G  + AL+++  +R  GV ++ F ++ I + C+ ++ L
Sbjct: 351 FESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDL 410

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
               Q HA  ++ G    +   SA++  YSK G+++ A   F  +   + ++W A+I  +
Sbjct: 411 ICGAQIHADAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAH 470

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
             HG+  EA+ LF++M  +G+RPN VTF+ +L+ACS SGL + G +I  SMS ++ + P 
Sbjct: 471 AYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMSDEYGVNPT 530

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
             HY CMI++  R GLL EA  +IR  PF+     W +LL  C  + NLE+G  AA+ ++
Sbjct: 531 IDHYNCMIDVYSRAGLLQEALEVIRSLPFEPDVMSWKSLLGGCWSHRNLEIGMIAADNIF 590

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
            ++P   + YV++ N+Y  +GK  EAA+  + +  + LR   +CSWI VK + H F+ GD
Sbjct: 591 RLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVVGD 650

Query: 589 QSHVQTKEIYRKVDRMMLEISKHG-YVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLIN 647
           + H QT++IY K+  +     K    +  E+  L D  E+++++L  HSE+LA+A+GLI 
Sbjct: 651 RHHPQTEQIYSKLKELNFSFKKSKERLLNEENALCDFTERKEQLLD-HSERLAIAYGLIC 709

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T+  TP+ + ++ R C DCH+  K +++VTGRE+VVRD +RFHH   G CSC DYW
Sbjct: 710 TAADTPIMVFKNTRSCKDCHDFAKRVSIVTGRELVVRDGNRFHHINSGECSCRDYW 765



 Score =  185 bits (470), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 137/503 (27%), Positives = 240/503 (47%), Gaps = 44/503 (8%)

Query: 100 QIEKLVLNKRYREALELFEILEF-----EGGFDVGSSTYDALISACIGLRSIREVKRVFS 154
           Q+E L L    ++   L E+ EF     + G  +   +Y+ L   C  L ++ + K +F 
Sbjct: 58  QVENLHLISLAKQG-NLREVHEFIRNMDKVGISINPRSYEYLFKMCGTLGALSDGK-LFH 115

Query: 155 YMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLE 214
             L      + ++ N +L M+  C     A R FD++ +++L S + II+   + G   E
Sbjct: 116 NRLQRMANSNKFIDNCILKMYCDCKSFTSAERFFDKIVDQDLSSWSTIISAYTEEGRIDE 175

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
           A  LFL + +      S  F+T+I +     ++ +GKQ+HS  +++GF  N+ +   + +
Sbjct: 176 AVRLFLRMLDLGITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLIRIGFAANISIETLISN 235

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MY KCG ++ A+   ++M+ K  V    ++ GY     + +AL L+ +M   GV++D F 
Sbjct: 236 MYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMISEGVELDGFV 295

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           FS+I++ C  L  L   KQ H+  ++ G   ++   + LVDFY K  R E AR  F+ + 
Sbjct: 296 FSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIH 355

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS---------- 444
             N  SW+ALIAGY   G+ + A+E+F+ +   G+  N   +  +  ACS          
Sbjct: 356 EPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDLICGAQ 415

Query: 445 ------RSGL--------------SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
                 + GL              S+ G   +   +     KP  + +  +I      G 
Sbjct: 416 IHADAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGK 475

Query: 485 LDEAFALIR---GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNY 538
             EA  L +   G+  +     +  LL AC  +G ++ GK   + +   YG+ P  + +Y
Sbjct: 476 AFEALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMSDEYGVNP-TIDHY 534

Query: 539 VVLLNIYNSSGKLKEAAEVIRTL 561
             ++++Y+ +G L+EA EVIR+L
Sbjct: 535 NCMIDVYSRAGLLQEALEVIRSL 557


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/603 (36%), Positives = 348/603 (57%), Gaps = 8/603 (1%)

Query: 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP 163
           LVLN R  EAL+LF          +  STY  +I+ C  L+ +   +++ S +L  GF  
Sbjct: 233 LVLNGRDLEALQLFHDSRSSITM-LTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHS 291

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMP-ERNLVSCNMIIAGMIDSGDYLEAFLLFLDL 222
              +   ++  + + G +  A  +F  M   +N+VS   +I G I +GD   A  LF  +
Sbjct: 292 YGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRM 351

Query: 223 WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
            E+       T++T++  S      S   Q+H+  +K  +     V  AL+  YSK  S 
Sbjct: 352 REDGVAPNDLTYSTILTVSEA----SFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCST 407

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           E+A  +F  + +K  V W+ ++  YA  G    A + + +M   G+K + FT S  I  C
Sbjct: 408 EEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDAC 467

Query: 343 -TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
            +  A ++  +Q HA  ++H     +  +SALV  Y++ G IE+A+ VF++   ++++SW
Sbjct: 468 ASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSW 527

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           N++++GY  HG  ++A+++F QM + G+  + +TFL+V+  C+ +GL E G + F  M R
Sbjct: 528 NSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVR 587

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           D+ I P   HYACM++L  R G LDE  +LI G PF     +W ALL ACRV+ N+ELGK
Sbjct: 588 DYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGK 647

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
            AAEKL  +EP   + YV+L NIY+++GK KE  EV + +  K +R    CSWI++K + 
Sbjct: 648 LAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKV 707

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLA 640
           H F++ D+SH  +++IY K+  M  ++ + GY P+   +  DV E Q++ +L+ HSE+LA
Sbjct: 708 HFFIASDKSHPLSEQIYAKLRAMTAKLKQEGYCPDTSFVPHDVAEDQKEAMLAMHSERLA 767

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AFGLI T    PL I ++ R+  D H  +K+++ +  REIV+RD  RFHHFK G+CSCG
Sbjct: 768 LAFGLIATPPAAPLHIFKNLRVSGDGHTVMKMVSEIEDREIVMRDCCRFHHFKSGVCSCG 827

Query: 701 DYW 703
           D+W
Sbjct: 828 DFW 830



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 201/376 (53%), Gaps = 9/376 (2%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D+ +   ++ M++    ++D R++F+ M +RN+V+   ++ G I +G  L+   LF  + 
Sbjct: 90  DIRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMR 149

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
            E       TF++++   A   ++ +G+ +H+ ++K G    VFV  +L++MY+KCG +E
Sbjct: 150 AEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVE 209

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
           +A+ VF  M  +  V WNT++AG  L+G   EAL L+++ R S   +   T+S +I +C 
Sbjct: 210 EARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCA 269

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-CKNVISWN 402
            L  L  A+Q H+ +++HGF       +AL+D Y+K G+++ A  VF  M   +NV+SW 
Sbjct: 270 NLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWT 329

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           A+I G   +G    A  LF +M  +G+ PN +T+  +L+    S   +   ++ ++   +
Sbjct: 330 AMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVSEASFPPQIHAQVIKT---N 386

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG--NLELG 520
           ++  P  +  A M+    +    +EA ++ +    K   + W+A+LT     G  N    
Sbjct: 387 YECTP-TVGTALMVS-YSKLCSTEEALSIFKMIDQKDVVS-WSAMLTCYAQAGDCNGATN 443

Query: 521 KFAAEKLYGMEPEKLS 536
            F    ++G++P + +
Sbjct: 444 AFIKMTMHGLKPNEFT 459



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 124/265 (46%), Gaps = 15/265 (5%)

Query: 310 HGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR--HGFGLD 366
            G+  +ALD + +  R  G  +       II+IC  +      KQ HA  VR  H  G D
Sbjct: 32  QGFVHQALDHFLDAHRRQGRCVGGGALLGIIKICGSVPDRVLGKQLHALCVRCGHDHG-D 90

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           I   ++LVD Y  W  + D R VF+ ML +NV++W +L+ GY   G   + + LF +M  
Sbjct: 91  IRVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRA 150

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC--MIELLGREGL 484
            G+ PN  TF +VLS  +  G+ + G  +    ++  K    +  + C  ++ +  + GL
Sbjct: 151 EGVWPNPFTFSSVLSMVASQGMVDLGQHVH---AQSIKFGCCSTVFVCNSLMNMYAKCGL 207

Query: 485 LDEAFALIRGAPFKTTKNM--WAALLTACRVNG-NLELGKFAAEKLYGMEPEKLSNYVVL 541
           ++EA  +        T++M  W  L+    +NG +LE  +   +    +     S Y  +
Sbjct: 208 VEEARVVF---CRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTV 264

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGL 566
           +N+  +   L  A ++  ++ + G 
Sbjct: 265 INLCANLKHLGLARQLHSSVLKHGF 289


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/570 (36%), Positives = 335/570 (58%), Gaps = 1/570 (0%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           AL SA      +R  +++ +  L      + ++   +L ++ +CG++  A+R+FDEMP  
Sbjct: 76  ALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHP 135

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           + V    +I   +D+GD  EA  +  + +       S T   ++ A A +  ++ G+ + 
Sbjct: 136 STVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVW 195

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
             A + G   +VFV+ A +D+Y KCG +  A+ VFD+M  K  V W  ++ GYA +G+  
Sbjct: 196 RAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPR 255

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EALDL+  M+  G+K D +  +  +  CTRL +L+  +QA   +    F  + V  +AL+
Sbjct: 256 EALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALI 315

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D Y+K G   +A  VF +M  K++I WNA+I G G  G  + A  L  QM  +G++ N  
Sbjct: 316 DMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDN 375

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           TF+ +L +C+ +GL + G   F +M++ + I PR  HY CM++LL R GLL EA  L+  
Sbjct: 376 TFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDD 435

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            P      +  ALL  C+++ N EL +   ++L  +EP    NYV+L NIY++ G+ ++A
Sbjct: 436 MPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDA 495

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
           A++   ++ KG+  +PACSW+E + + H F  GD+SH  + +IY+K+D + LE+   GY 
Sbjct: 496 AKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYE 555

Query: 615 PEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLI 673
           P  + ++ DV DE+++  L +HSEKLA+AF L+ T     +++ ++ R+C DCH AIKL+
Sbjct: 556 PTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLV 615

Query: 674 AMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + +T REI+VRD +RFH F+DG CSC DYW
Sbjct: 616 SRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 158/339 (46%), Gaps = 15/339 (4%)

Query: 99  SQIEKLVLNKRYREALELFEILE-----FEGGFDVGSSTYDALISACIGLRSIREVKRVF 153
           S +    L   Y +A +L E +      F  G    S T   +++AC  +  +   + V+
Sbjct: 136 STVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVW 195

Query: 154 SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
                 G    +++    + ++V+CG M  AR +FD+M  ++ V+   ++ G   +G   
Sbjct: 196 RAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPR 255

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM----GFGDNVFVS 269
           EA  LFL +  E         A  + A   L  + +G+Q    A++M     F DN  + 
Sbjct: 256 EALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQ----AIRMVDWDEFLDNPVLG 311

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            ALIDMY+KCGS  +A  VF +M +K  + WN +I G  + G+ + A  L  +M  SGVK
Sbjct: 312 TALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVK 371

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARH 388
           ++  TF  ++  CT    ++  ++    + + +     I     +VD  S+ G +++A  
Sbjct: 372 LNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQ 431

Query: 389 VFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           + D M +  N +   AL+ G   H   E A  + +Q++L
Sbjct: 432 LVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLIL 470


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/577 (37%), Positives = 335/577 (58%), Gaps = 11/577 (1%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           L++A  G  S+R  + + +  L  G + D+ + N +L M+ RCG   +AR LF+ +P  N
Sbjct: 329 LVNASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPG-N 387

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG----LELISVGK 251
            VS N +IAG    G    A  LF  +  E       T+  ++ A A        ++ G+
Sbjct: 388 AVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGR 447

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE--MSEK-TTVGWNTIIAGYA 308
           +LHS  +  G+     +  A++ MY+ CG+I++A   F    M ++   V WN II+  +
Sbjct: 448 KLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLS 507

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
            HG+ + AL  +  M   GV  +  T   ++  C   A+L      H  L   G   ++ 
Sbjct: 508 QHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVF 567

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLC-KNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
             +AL   Y + G +E AR +F+K+   ++V+ +NA+IA Y  +G   EA++LF +M   
Sbjct: 568 VATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQE 627

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G RP+  +F++VLSACS  GL++ GWEIF+SM + + I P   HYAC +++LGR G L +
Sbjct: 628 GSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLAD 687

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A  LIR    K T  +W  LL ACR   +++ G+ A   +  ++P   S YVVL NI   
Sbjct: 688 AEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAG 747

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
           +GK  EAAEV   +  +GLR     SWIE+K + H F++GD+SH +++EIYR+++R+  E
Sbjct: 748 AGKWDEAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAE 807

Query: 608 ISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
           I + GYVP+ + +L  VDE E +R+L  HSE+LA+A G++++S  T ++++++ R+C DC
Sbjct: 808 IREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSSTDT-VRVMKNLRVCEDC 866

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           HNA K I+ +  +EIVVRD  RFHHF DG CSCGDYW
Sbjct: 867 HNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 132/469 (28%), Positives = 229/469 (48%), Gaps = 29/469 (6%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           + A+ +F  ++ EG     + T+ A++ AC  L  + + + + ++++ +G E    + N 
Sbjct: 110 KRAIWMFHRMQQEG-VRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANL 168

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           +L ++  CG +  A  LF+ M ER+LVS N  IA    SGD   A  LF  +  E     
Sbjct: 169 LLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPA 227

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             T    +   A    I   + +HS   + G    + VS AL   Y++ G ++ A+ VFD
Sbjct: 228 RITLVITLSVCAK---IRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFD 284

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
             +E+  V WN ++  YA HG+  EA  L+  M   G+     T   ++   T  +SL  
Sbjct: 285 RAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVT---LVNASTGCSSLRF 341

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            +  HA  +  G   DIV  +AL+D Y++ G  E+ARH+F+  +  N +SWN +IAG   
Sbjct: 342 GRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEG-IPGNAVSWNTMIAGSSQ 400

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
            G+ + A+ELF++M L GM P   T+L +L A + +       E  ++M+   K+  R +
Sbjct: 401 KGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNP------EEARAMAEGRKLHSRIV 454

Query: 471 H--YA-------CMIELLGREGLLDEAFALIRGAPFKTTKNM--WAALLTACRVNGNLE- 518
              YA        ++++    G +DEA A  +    +   ++  W A++++   +G+ + 
Sbjct: 455 SCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKR 514

Query: 519 -LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
            LG F    L+G+ P +++  V +L+    +  L E   V   LR  G+
Sbjct: 515 ALGFFRRMDLHGVAPNQIT-CVAVLDACAGAAALTEGVIVHDHLRHSGM 562



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 196/409 (47%), Gaps = 19/409 (4%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           R + + +R+ + ++S G E +L   N +L ++++C  + D   +F  +  R+  S   II
Sbjct: 43  RLLSQGRRIHARIVSLGLEEELG--NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTII 100

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
               + G    A  +F  + +E   C + TF  +++A A L  +S G+ +H+  ++ G  
Sbjct: 101 TAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLE 160

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
               ++  L+ +Y  CG +  A  +F+ M E+  V WN  IA  A  G  + AL+L+  M
Sbjct: 161 GKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANAQSGDLDMALELFQRM 219

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
           +  GV+    T  + + +C   A +  A+  H+ +   G    +V ++AL   Y++ G +
Sbjct: 220 QLEGVRPARITLVITLSVC---AKIRQARAIHSIVRESGLEQTLVVSTALASAYARLGHL 276

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           + A+ VFD+   ++V+SWNA++  Y  HG   EA  LF +ML  G+ P+ VT +   + C
Sbjct: 277 DQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGC 336

Query: 444 S--RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           S  R G       + + + RD  +         ++++  R G  +EA  L  G P     
Sbjct: 337 SSLRFGRMIHACALEKGLDRDIVLGN------ALLDMYTRCGSPEEARHLFEGIPGNAVS 390

Query: 502 NMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
             W  ++      G ++  L  F   +L GM P + + Y+ LL    S+
Sbjct: 391 --WNTMIAGSSQKGQMKRALELFQRMQLEGMAPVR-ATYLNLLEAVASN 436



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 159/319 (49%), Gaps = 16/319 (5%)

Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
           ++RA+    L+S G+++H+  + +G  + +     L+ +Y KC S+ D + VF  +  + 
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIVSLGLEEEL--GNHLLRLYLKCESLGDVEEVFSRLEVRD 92

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
              W TII  Y  HG ++ A+ +++ M+  GV+ D  TF  +++ C RL  L   +  HA
Sbjct: 93  EASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHA 152

Query: 357 GLVRHGF-GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
            +V  G  G  ++AN  L+  Y   G +  A  +F++M  ++++SWNA IA     G  +
Sbjct: 153 WIVESGLEGKSVLAN-LLLHIYGSCGCVASAMLLFERME-RDLVSWNAAIAANAQSGDLD 210

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
            A+ELF++M L G+RP  +T +  LS C++     R      S+ R+  ++   +    +
Sbjct: 211 MALELFQRMQLEGVRPARITLVITLSVCAKI----RQARAIHSIVRESGLEQTLVVSTAL 266

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL-ELGKFAAEKLY-GMEPE 533
                R G LD+A  +   A  +   + W A+L A   +G++ E     A  L+ G+ P 
Sbjct: 267 ASAYARLGHLDQAKEVFDRAAERDVVS-WNAMLGAYAQHGHMSEAALLFARMLHEGIPPS 325

Query: 534 KLSNYVVLLNIYNSSGKLK 552
           K    V L+N       L+
Sbjct: 326 K----VTLVNASTGCSSLR 340



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 101/211 (47%), Gaps = 8/211 (3%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I  L  +   + AL  F  ++  G       T  A++ AC G  ++ E   V  ++  +G
Sbjct: 503 ISSLSQHGHGKRALGFFRRMDLHG-VAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSG 561

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP-ERNLVSCNMIIAGMIDSGDYLEAFLLF 219
            E ++++   +  M+ RCG +  AR +F+++  ER++V  N +IA    +G   EA  LF
Sbjct: 562 MESNVFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLF 621

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG---DNVFVSCALIDMY 276
             + +E S    ++F +++ A +   L   G ++   +++  +G        +CA +D+ 
Sbjct: 622 WRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFR-SMRQSYGIAPSEDHYACA-VDVL 679

Query: 277 SKCGSIEDAQGVFDEMSEKTTV-GWNTIIAG 306
            + G + DA+ +   M  K TV  W T++  
Sbjct: 680 GRAGWLADAEELIRCMDVKPTVLVWKTLLGA 710


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/581 (36%), Positives = 324/581 (55%), Gaps = 23/581 (3%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G DV  +T  +++  C    ++   K V S  + + FE  +   N +L M+ +CG +  A
Sbjct: 108 GIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGA 167

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
            R+F++M ERN+VS   +IAG    G    A +L   + +E          +++ A A  
Sbjct: 168 LRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARS 227

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             +  GK +H          N+FV  AL+DMY+KCGS+E A  VF  M  K  + WNT++
Sbjct: 228 GSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV 287

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
                                  +K D  T + I+  C  L++LE  K+ H  ++R+G+ 
Sbjct: 288 GE---------------------LKPDSRTMACILPACASLSALERGKEIHGYILRNGYS 326

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D    +ALVD Y K G +  AR +FD +  K+++SW  +IAGYG HG G EA+  F +M
Sbjct: 327 SDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEM 386

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
              G+ P+ V+F+++L ACS SGL E+GW  F  M  D  I+P+  HYACM++LL R G 
Sbjct: 387 RDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGN 446

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L +A+  I   P      +W ALL  CR+  ++EL +  AE+++ +EPE    YV+L NI
Sbjct: 447 LSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANI 506

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ-SHVQTKEIYRKVDR 603
           Y  + K +E   +   + +KGLR  P CSWIE+K + ++F+SG+  SH  +K+I   + +
Sbjct: 507 YAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNNSSHPHSKKIESLLKK 566

Query: 604 MMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           M  ++ + GY P+ K  L + DE Q++  L  HSEKLA+AFGL+       +++ ++ R+
Sbjct: 567 MRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRV 626

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH   K ++  T REIV+RD++RFHHFKDG CSC  +W
Sbjct: 627 CGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 667



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 122/479 (25%), Positives = 209/479 (43%), Gaps = 109/479 (22%)

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL--------- 220
           +++  +  CG + + RR+FD M ++N+   N +++     GD+ E+  LF          
Sbjct: 1   KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 60

Query: 221 -------DLWEEFSDCGSRTFATMIRA--SAGLE-------------------------- 245
                  +L+++  D    ++ +MI    S GL                           
Sbjct: 61  KRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 120

Query: 246 -------LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV 298
                   +S+GK +HS A+K  F   +  S  L+DMYSKCG ++ A  VF++M E+  V
Sbjct: 121 VGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 180

Query: 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
            W ++IAGY   G+S+ A+ L  +M   GVK+D    + I+  C R  SL++ K  H  +
Sbjct: 181 SWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYI 240

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
             +    ++   +AL+D Y+K G +E A  VF  M+ K++ISWN ++        GE   
Sbjct: 241 KANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV--------GE--- 289

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR---------- 468
                     ++P+  T   +L AC+     ERG EI   + R+     R          
Sbjct: 290 ----------LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLY 339

Query: 469 --------------------AMHYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWA 505
                                + +  MI   G  G  +EA A    +R A  +  +  + 
Sbjct: 340 VKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFI 399

Query: 506 ALLTACRVNGNLELGK---FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           ++L AC  +G LE G    +  +  + +EP KL +Y  ++++ + +G L +A + I TL
Sbjct: 400 SILYACSHSGLLEQGWRFFYIMKNDFNIEP-KLEHYACMVDLLSRTGNLSKAYKFIETL 457


>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/567 (37%), Positives = 327/567 (57%), Gaps = 8/567 (1%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVL--LMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           SI + K+  + +L T    +    ++++  L     G +  AR+LF +M   +   CN +
Sbjct: 23  SISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLNYARKLFTQMQNPDPFICNTM 82

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           I G   S +  EA  L+  + E      + T+  ++ A A L  + +G++ H   LK GF
Sbjct: 83  IRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCEVLKNGF 142

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
           G ++FV  ALI  Y  CGS   A  VFDE + +  V WN +I  +   G SE+A DL  E
Sbjct: 143 GSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKAFDLLDE 202

Query: 323 M-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA---GLVRHGFGLDIVANSALVDFYS 378
           M +   ++ D  T   ++  C +L +LE  K  H+    L +     D+V  +ALVD Y+
Sbjct: 203 MTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELDKFEINCDLVLETALVDMYA 262

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
           K G I+ A  VF +M  +NV +WNALI G   HG GE+A+ LF+QM  + + P+ VTF+A
Sbjct: 263 KCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIA 322

Query: 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK 498
           +L ACS +GL + G  +FQ+M    +I+PR  HY C+++LL R   +D+A A I   P K
Sbjct: 323 LLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIK 382

Query: 499 TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVI 558
               +WA LL ACR  G+ +L +    ++  +EP+    YV+L N+Y    +   A ++ 
Sbjct: 383 ANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLR 442

Query: 559 RTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEIS-KHGYVPEE 617
           + ++ KG+   P CSWIE+    H F++GD+SH+QT++IY  ++ M   ++   G+VP  
Sbjct: 443 KQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGT 502

Query: 618 KTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMV 676
             +L D++E+E +  L  HSEKLA+A GLI+T   +P++IV++ R+C DCH+ +K+ + V
Sbjct: 503 ANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKV 562

Query: 677 TGREIVVRDASRFHHFKDGMCSCGDYW 703
             REIV RD SRFHHFK+G CSC D+W
Sbjct: 563 YNREIVARDRSRFHHFKEGSCSCMDFW 589



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 162/342 (47%), Gaps = 38/342 (11%)

Query: 88  TQMKKPSAGIC-SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           TQM+ P   IC + I     ++   EA+ L+  +  E G  V + TY  +++AC  L ++
Sbjct: 69  TQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFM-VERGVPVDNYTYPFVLAACARLGAV 127

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
           +  +R    +L  GF  DL++ N ++  +  CG    A  +FDE   R++V+ N++I   
Sbjct: 128 KLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAH 187

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSR-----TFATMIRASAGLELISVGKQLHSCAL--- 258
           ++ G   +AF    DL +E +   +      T  +++ A A L  +  GK LHS +    
Sbjct: 188 LNKGLSEKAF----DLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELD 243

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
           K     ++ +  AL+DMY+KCGSI+ A  VF  M  +    WN +I G A+HG+ E+A+ 
Sbjct: 244 KFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAIS 303

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL-DIVAN------- 370
           L+ +M    +  D  TF  ++  C+           HAGLV  G  +   + N       
Sbjct: 304 LFDQMEHDKLMPDDVTFIALLCACS-----------HAGLVDEGLAMFQAMKNKFQIEPR 352

Query: 371 ----SALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAG 407
                 +VD   +  +++DA    + M  K N + W  L+  
Sbjct: 353 MEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGA 394


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/634 (33%), Positives = 363/634 (57%), Gaps = 16/634 (2%)

Query: 84  SLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGL 143
           SL D   +K      + I    +N +  EALE+F +   E G      T  A+++AC   
Sbjct: 134 SLFDQMPEKNVVTWTALITGYTVNSQLLEALEVF-VEMLEAGRYPSHYTLGAMLNACSAS 192

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
            +     +V  Y +         + N +  M+ + G +  A R F  +P++N+++   +I
Sbjct: 193 NNADLGSQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMI 252

Query: 204 AGMIDSGDYLE-AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           +   +  +Y E    LFLD+  +       T  +++        +++GKQ+ +   K+G 
Sbjct: 253 SACAEDENYTELGLTLFLDMLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGC 312

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA---------LHGYS 313
             N+ V  + + +Y + G  ++A   F+EM + + + WN +I+GYA         LH  S
Sbjct: 313 QTNIPVKNSTMYLYLRKGETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARS 372

Query: 314 E--EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
              +AL ++  ++ S +K D FTFS I+ +C+ + +LE  +Q HA  ++ GF  D+V NS
Sbjct: 373 RGFQALKVFRNLKRSAMKPDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNS 432

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           ALV+ Y+K G IEDA   F +M  + +++W ++I+GY  HGR +EA++LFE M   G+RP
Sbjct: 433 ALVNMYNKCGCIEDATKAFVEMSIRTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRP 492

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           N +TF+ VLSACS +GL+E+    F  M  ++KI+P   HY CM+++  R G LD+AFA 
Sbjct: 493 NEITFVCVLSACSYAGLAEKAEHYFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDAFAF 552

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           IR   F+  + +W++L+  CR +GN+EL  +AA++L  + P+ +  YV+LLN+Y S+ + 
Sbjct: 553 IRRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLIELRPKGIETYVLLLNMYISNERW 612

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
            + A V + ++++GL +L   SWI +K + + F + D++H  + E+Y+ ++ ++ +    
Sbjct: 613 HDVARVRKLMKQEGLGVLMDRSWITIKDKVYFFKANDKTHELSDELYQLLENLLEKAKTI 672

Query: 612 GYVPEEKTLLPDVDEQEQR---VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHN 668
           GY P +   L D ++ ++     + +HSE+LAVA GL+ T     +++ ++  +C DCH+
Sbjct: 673 GYEPYQSAELSDSEDDKKPPAGSVRHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHS 732

Query: 669 AIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           +IK  +++  REIVVRD+ R H FKDG CSCGD+
Sbjct: 733 SIKFFSLLANREIVVRDSKRLHKFKDGRCSCGDF 766



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/446 (25%), Positives = 215/446 (48%), Gaps = 18/446 (4%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G  V S+ Y  L+  C+   S+   + +  +M+ TG   D+++   ++  ++RCG   DA
Sbjct: 73  GKTVQSAMYVPLLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDA 132

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R LFD+MPE+N+V+   +I G   +   LEA  +F+++ E        T   M+ A +  
Sbjct: 133 RSLFDQMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRYPSHYTLGAMLNACSAS 192

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
               +G Q+H   +K        +  +L  MY+K GS+E A   F  + +K  + W T+I
Sbjct: 193 NNADLGSQVHGYTIKYRALSITSIGNSLCRMYAKSGSLESAMRAFRMVPDKNVITWTTMI 252

Query: 305 AGYAL-HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           +  A    Y+E  L L+ +M   GV  + FT + ++ +C     L   KQ  A   + G 
Sbjct: 253 SACAEDENYTELGLTLFLDMLMDGVLPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGC 312

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN-----------HG 412
             +I   ++ +  Y + G  ++A   F++M   ++I+WNA+I+GY               
Sbjct: 313 QTNIPVKNSTMYLYLRKGETDEAMRFFEEMDDVSIITWNAMISGYAQIMETAKDDLHARS 372

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
           RG +A+++F  +  + M+P+  TF ++LS CS     E+G +I     +   +    ++ 
Sbjct: 373 RGFQALKVFRNLKRSAMKPDLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNS 432

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGM 530
           A ++ +  + G +++A         +T    W ++++    +G  +  +  F   +  G+
Sbjct: 433 A-LVNMYNKCGCIEDATKAFVEMSIRTLVT-WTSMISGYSQHGRPQEAIQLFEDMRFAGV 490

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAE 556
            P +++ +V +L+  + +G L E AE
Sbjct: 491 RPNEIT-FVCVLSACSYAG-LAEKAE 514


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/625 (35%), Positives = 363/625 (58%), Gaps = 43/625 (6%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           AL+L+ ++    G    S T+  L+ +C   +  +E +++  ++L  GF+ D+Y+   ++
Sbjct: 73  ALKLYLVM-ISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLI 131

Query: 173 LMHVRCGMMIDARR-------------------------------LFDEMPERNLVSCNM 201
            M+ + G + DAR+                               LFDE+P +++VS N 
Sbjct: 132 SMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNA 191

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKM 260
           +I+G +++G+Y EA  LF ++    +      T  T++ A A  + I +G+ +HS     
Sbjct: 192 MISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDH 251

Query: 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY 320
           GF  N+ +  ALID+YSK G +E A  +FD +  K  + WNT+I GY      +EAL L+
Sbjct: 252 GFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLF 311

Query: 321 YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN-----SALVD 375
            EM  SG   +  T   I+  C  L +++  +  H  + +   G  +V N     ++L+D
Sbjct: 312 QEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKG--VVTNVSSLQTSLID 369

Query: 376 FYSKWGRIEDARHVFDK-MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
            Y+K G I+ A+ VFD  M  +++ +WNA+I+G+  HGR   A ++F +M +NG+ P+ +
Sbjct: 370 MYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDI 429

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           TF+ +LSACS SG+ + G  IF+SM+R ++I P+  HY CMI+LLG  GL  EA  +I  
Sbjct: 430 TFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINT 489

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            P +    +W +LL AC+++GNLELG+  A+KL  +EP    +YV+L NIY ++G+  E 
Sbjct: 490 MPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEV 549

Query: 555 AEVIRTLRRKGL-RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGY 613
           A++   L  KG+ + +P CS IE+    H F+ GD+ H Q +EIY  ++ M + + + G+
Sbjct: 550 AKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGF 609

Query: 614 VPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKL 672
           VP+   +L +++E+  +  L +HSEKLA+AFGLI+T   T L I+++ R+C +CH A KL
Sbjct: 610 VPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLISTKPGTKLTIMKNLRVCKNCHEATKL 669

Query: 673 IAMVTGREIVVRDASRFHHFKDGMC 697
           I+ +  REI+ RD +RF HF+DG+C
Sbjct: 670 ISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 129/461 (27%), Positives = 229/461 (49%), Gaps = 41/461 (8%)

Query: 149 VKRVFSYMLSTGFEPDLYMRNRVL---LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
           V+ + + M+ TG     Y  +++L   ++         A  +FD + E NL+  N +  G
Sbjct: 4   VRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRG 63

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
              S D + A  L+L +        S TF  ++++ A  ++   G+Q+H   LK+GF  +
Sbjct: 64  HALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLD 123

Query: 266 VFVSCALIDMYSKCGSIEDA-------------------------------QGVFDEMSE 294
           ++V  +LI MY++ G +EDA                               Q +FDE+  
Sbjct: 124 IYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPG 183

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYE-MRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
           K  V WN +I+GY   G  +EAL+L+ E M  + V+ D  T   ++  C +  S+E  + 
Sbjct: 184 KDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRH 243

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            H+ +  HGF  ++   +AL+D YSK+G +E A  +FD +  K+VISWN LI GY +   
Sbjct: 244 VHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNL 303

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK--IKPRAMH 471
            +EA+ LF++ML +G  PN VT L++L AC+  G  + G  I   +++  K  +   +  
Sbjct: 304 YKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSL 363

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG--NLELGKFAAEKLYG 529
              +I++  + G +D A  +   +    + + W A+++   ++G  N     F+  ++ G
Sbjct: 364 QTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNG 423

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLP 570
           +EP+ ++ +V LL+  + SG L     + R++ R G  + P
Sbjct: 424 IEPDDIT-FVGLLSACSHSGMLDLGRNIFRSMTR-GYEITP 462



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 158/326 (48%), Gaps = 12/326 (3%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I   V    Y+EALELF+ +          ST   ++SAC    SI   + V S++  
Sbjct: 191 AMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWIND 250

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF  +L + N ++ ++ + G +  A  LFD +  ++++S N +I G      Y EA LL
Sbjct: 251 HGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLL 310

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK--MGFGDNV-FVSCALIDM 275
           F ++          T  +++ A A L  I +G+ +H    K   G   NV  +  +LIDM
Sbjct: 311 FQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDM 370

Query: 276 YSKCGSIEDAQGVFD-EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           Y+KCG I+ AQ VFD  MS ++   WN +I+G+A+HG +  A D++  MR +G++ D  T
Sbjct: 371 YAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDIT 430

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN----SALVDFYSKWGRIEDARHVF 390
           F  ++  C+    L+  +     + R   G +I         ++D     G  ++A  + 
Sbjct: 431 FVGLLSACSHSGMLDLGRNIFRSMTR---GYEITPKLEHYGCMIDLLGHSGLFKEAEEMI 487

Query: 391 DKM-LCKNVISWNALIAGYGNHGRGE 415
           + M +  + + W +L+     HG  E
Sbjct: 488 NTMPMEPDGVIWCSLLKACKIHGNLE 513


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/653 (34%), Positives = 356/653 (54%), Gaps = 48/653 (7%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S IE      + + ALE+F  +  E G    + T   ++  C  L +    K++  + ++
Sbjct: 198 SIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVT 257

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           +    ++++ N ++ M+ +CGMM +A  +F  M  +++VS N ++AG    G + +A  L
Sbjct: 258 SEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRL 317

Query: 219 FLDLWEEFSDCGSRTFATMIRA------------------SAGLE-----LISV------ 249
           F  + EE       T++  I                    S+G++     LISV      
Sbjct: 318 FEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCAS 377

Query: 250 ------GKQLHSCALKM-------GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS--E 294
                 GK++H  A+K        G GD   V   LIDMY+KC  ++ A+ +FD +S  E
Sbjct: 378 VGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKE 437

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEM--RDSGVKMDHFTFSMIIRICTRLASLEHAK 352
           +  V W  +I GY+ HG + +AL+L  EM   D   + + FT S  +  C  LA+L   K
Sbjct: 438 RDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGK 497

Query: 353 QAHAGLVRHG-FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           Q HA  +R+    + +  ++ L+D Y+K G I DAR VFD M+ KN ++W +L+ GYG H
Sbjct: 498 QIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMH 557

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G GEEA+ +F++M   G + + VT L VL ACS SG+ ++G E F  M     + P   H
Sbjct: 558 GYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEH 617

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           YAC+++LLGR G L+ A  LI   P +    +W A L+ CR++G +ELG++AAEK+  + 
Sbjct: 618 YACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELA 677

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
                +Y +L N+Y ++G+ K+   +   +R KG++  P CSW+E  K    F  GD++H
Sbjct: 678 SNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTH 737

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSD 650
              KEIY+ +   M  I   GYVPE    L DVD++E+  L + HSEKLA+A+G++ T  
Sbjct: 738 PHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQ 797

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              ++I ++ R+C DCH A   ++ +   +I++RD+SRFHHFK+G CSC  YW
Sbjct: 798 GAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 132/483 (27%), Positives = 223/483 (46%), Gaps = 57/483 (11%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  +  AC  + S+R  +   +  L TGF  ++++ N ++ M+ RC  + DAR++FDEM
Sbjct: 129 TFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEM 188

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELI 247
              ++VS N II      G    A  +F  +  EF   G R    T   ++   A L   
Sbjct: 189 SVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEF---GCRPDNITLVNVLPPCASLGTH 245

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           S+GKQLH  A+      N+FV   L+DMY+KCG +++A  VF  MS K  V WN ++AGY
Sbjct: 246 SLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGY 305

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSM------------------------------ 337
           +  G  E+A+ L+ +M++  +KMD  T+S                               
Sbjct: 306 SQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNE 365

Query: 338 -----IIRICTRLASLEHAKQAHA-------GLVRHGFGLDIVANSALVDFYSKWGRIED 385
                ++  C  + +L H K+ H         L ++G G + +  + L+D Y+K  +++ 
Sbjct: 366 VTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDT 425

Query: 386 ARHVFDKMLCK--NVISWNALIAGYGNHGRGEEAVELFEQMLLNG--MRPNHVTFLAVLS 441
           AR +FD +  K  +V++W  +I GY  HG   +A+EL  +M       RPN  T    L 
Sbjct: 426 ARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALV 485

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           AC+       G +I     R+ +         C+I++  + G + +A  L+        +
Sbjct: 486 ACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDA-RLVFDNMMAKNE 544

Query: 502 NMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
             W +L+T   ++G  E  LG F   +  G + + ++  VVL    + SG + +  E   
Sbjct: 545 VTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYAC-SHSGMIDQGMEYFN 603

Query: 560 TLR 562
            ++
Sbjct: 604 RMK 606



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 154/330 (46%), Gaps = 17/330 (5%)

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM--SEKTTVGWNTII 304
           IS  K +H   L  G    + ++  LI  Y   G +  A  +      S+     WN++I
Sbjct: 41  ISQVKLIHQKLLSFGI-LTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLI 99

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
             Y  +G + + L L+  M       D++TF  + + C  ++S+   + AHA  +  GF 
Sbjct: 100 RSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFI 159

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            ++   +ALV  YS+   + DAR VFD+M   +V+SWN++I  Y   G+ + A+E+F +M
Sbjct: 160 SNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRM 219

Query: 425 LLN-GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
               G RP+++T + VL  C+  G    G ++    +   ++        C++++  + G
Sbjct: 220 TNEFGCRPDNITLVNVLPPCASLGTHSLGKQL-HCFAVTSEMIQNMFVGNCLVDMYAKCG 278

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF--AAEKLYGMEPEKLSNYVVL 541
           ++DEA  +      K   + W A+     V G  ++G+F  A      M+ EK+   VV 
Sbjct: 279 MMDEANTVFSNMSVKDVVS-WNAM-----VAGYSQIGRFEDAVRLFEKMQEEKIKMDVVT 332

Query: 542 ----LNIYNSSGKLKEAAEVIRTLRRKGLR 567
               ++ Y   G   EA  V R +   G++
Sbjct: 333 WSAAISGYAQRGLGYEALGVCRQMLSSGIK 362


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/604 (33%), Positives = 349/604 (57%), Gaps = 3/604 (0%)

Query: 99   SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
            S I   V+N      LE+F I     G +V  +T  +++ A   + ++   + +  + + 
Sbjct: 541  SMINGCVVNGFSGNGLEIF-IQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVK 599

Query: 159  TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
              F  ++   N +L M+ +CG +  A  +F +M +  +VS    IA  +  G Y +A  L
Sbjct: 600  ACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGL 659

Query: 219  FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
            F ++  +       T  +++ A A    +  G+ +HS  +K G G N+ V+ ALI+MY+K
Sbjct: 660  FDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAK 719

Query: 279  CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            CGS+E+A+ VF ++  K  V WNT+I GY+ +    EAL+L+ +M+    K D  T + +
Sbjct: 720  CGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACV 778

Query: 339  IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
            +  C  LA+L+  ++ H  ++R G+  D+    ALVD Y+K G +  A+ +FD +  K++
Sbjct: 779  LPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDL 838

Query: 399  ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
            ISW  +IAGYG HG G EA+  F +M + G+ P+  +F  +L+ACS SGL   GW+ F S
Sbjct: 839  ISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNS 898

Query: 459  MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
            M  +  ++P+  HYAC+++LL R G L +A+  I   P K    +W  LL+ CR++ +++
Sbjct: 899  MRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVK 958

Query: 519  LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
            L +  AE ++ +EP+    YVVL N+Y  + K +E  ++ + ++++G +  P CSWIEV 
Sbjct: 959  LAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVG 1018

Query: 579  KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSE 637
             + ++F++G+  H Q K I   + ++ +++    Y    + +L + D+ E+ ++   HSE
Sbjct: 1019 GKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMIQCGHSE 1078

Query: 638  KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
            K A+AFG++N      +++ ++ R+C DCH   K ++  T REIV+RD++RFHHFKDG+C
Sbjct: 1079 KSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGLC 1138

Query: 698  SCGD 701
            SC D
Sbjct: 1139 SCRD 1142



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 207/400 (51%), Gaps = 4/400 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           ++I K       R A+EL   L     +++G ++Y +++  C   +S+ + KRV S ++S
Sbjct: 341 AKINKFCEMGDLRNAIEL---LTKSKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G   D  +  +++ M+V CG ++  R++FD++    +   N++++     G++ E+  L
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 457

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F  + +        TF  +++  A L  +   K++H   LK+GFG N  V  +LI  Y K
Sbjct: 458 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 517

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            G +E A  +FDE+SE   V WN++I G  ++G+S   L+++ +M   GV++D  T   +
Sbjct: 518 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 577

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +     + +L   +  H   V+  F  ++V ++ L+D YSK G +  A  VF KM    +
Sbjct: 578 LVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTI 637

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SW + IA Y   G   +A+ LF++M   G+RP+  T  +++ AC+ S   ++G ++   
Sbjct: 638 VSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSY 697

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK 498
           + ++       +  A +I +  + G ++EA  +    P K
Sbjct: 698 VIKNGMGSNLPVTNA-LINMYAKCGSVEEARLVFSKIPVK 736


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/589 (35%), Positives = 334/589 (56%), Gaps = 12/589 (2%)

Query: 125 GFDVGSSTYDALISACIG--LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           G ++ S    + + AC      SI   K +    +  G + D+ +   +L  + + G + 
Sbjct: 216 GLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLE 275

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYL-----EAFLLFLDLWEEFSDCGSRTFATM 237
           DA ++F  MP+ N+V  N +IAG +           EA  LF ++          TF+++
Sbjct: 276 DATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSI 335

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           ++A + +E    GKQ+H+   K     + F+  AL+++YS  GSIED    F    +   
Sbjct: 336 LKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDV 395

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           V W ++I G+  +G  E  L L++E+  SG K D FT S+++  C  LA+++  +Q HA 
Sbjct: 396 VSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAY 455

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
            ++ G G   +  ++ +  Y+K G I+ A   F +    +++SW+ +I+    HG  +EA
Sbjct: 456 AIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEA 515

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           V+LFE M  +G+ PNH+TFL VL ACS  GL E G   F+ M +DH I P   H AC+++
Sbjct: 516 VDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVD 575

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
           LLGR G L EA + I  + F+    MW +LL+ACRV+   + GK  AE++  +EPE  ++
Sbjct: 576 LLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAAS 635

Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI 597
           YV+L NIYN +G    A E+   ++ +G++  P  SWIEV    H F++GD+SH  ++ I
Sbjct: 636 YVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQVI 695

Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR---VLSYHSEKLAVAFGLINTSDWTPL 654
           Y +++ M+ EI K  Y+ E+  L+ D  E + +   ++SYHSEKLAV FG+I+     P+
Sbjct: 696 YVQLEEMLEEIKKLDYIDEK--LVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPV 753

Query: 655 QIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +++++ R C  CH  +KL + +  REI++RD  RFH F+DG CSCGDYW
Sbjct: 754 RVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 802



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 128/426 (30%), Positives = 210/426 (49%), Gaps = 11/426 (2%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G  + S TY  L+       S+   K    +M+ T F+P L++ N +L M+ +CG    A
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVA 73

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           ++LFD MP+RN+VS N +I+G    G Y E   LF +           TF+  +      
Sbjct: 74  KKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRT 133

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             + +G+ +H+     G G  V ++ +LIDMY KCG I+ A+ VF+   E  +V WN++I
Sbjct: 134 LDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLI 193

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR--LASLEHAKQAHAGLVRHG 362
           AGY   G ++E L L  +M   G+ ++ +     ++ C     +S+E  K  H   V+ G
Sbjct: 194 AGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLG 253

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR-----GEEA 417
             LD+V  +AL+D Y+K G +EDA  +F  M   NV+ +NA+IAG+            EA
Sbjct: 254 LDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEA 313

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           + LF +M   GM+P+  TF ++L ACS     E G +I   + + + ++        ++E
Sbjct: 314 MYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFK-YNLQSDEFIGNALVE 372

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY--GMEPEKL 535
           L    G +++        P K     W +L+     NG  E G     +L   G +P++ 
Sbjct: 373 LYSLSGSIEDGLKCFHSTP-KLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEF 431

Query: 536 SNYVVL 541
           +  ++L
Sbjct: 432 TISIML 437


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/596 (34%), Positives = 342/596 (57%), Gaps = 4/596 (0%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R+  +++LF  ++   GF     +  + I AC     ++  K V  Y++ +GFE D    
Sbjct: 303 RHEASVKLF--MDMIDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVAC 360

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N ++ M+ +CG ++ A+ +FD    ++ V+ N +I G   SG Y E    F  +  E   
Sbjct: 361 NILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME-RK 419

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
             S TF  ++   + L  I+ G+ +H   +K GF   + +  +L+D+Y+KCG ++D   V
Sbjct: 420 PDSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKV 479

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F  MS    + WNT+IA             +  EMR  G+  D  T   I+ +C+ LA  
Sbjct: 480 FSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVR 539

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
              K+ H  + + GF  ++   +AL++ YSK G +E+   VF  M  K+V++W ALI+ +
Sbjct: 540 RQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAF 599

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
           G +G G++A++ F+ M L+G+ P+ V F+A + ACS SG+ + G   F  M  D+ ++PR
Sbjct: 600 GMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPR 659

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
             HYAC+++LL R GLL +A   I   P K   ++W ALL+ACR  GN  + +  ++K+ 
Sbjct: 660 MEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKIL 719

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
            +  +    YV++ NIY + GK  +   V  +++ KGL+  P  SWIE++K+ +VF +GD
Sbjct: 720 ELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGD 779

Query: 589 QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLIN 647
           +S  Q  ++   ++ ++  ++K GYV + +  L DV+E ++R +L  HSE+LA+AFGL+N
Sbjct: 780 KSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLN 839

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T   +PL ++++ R+C DCH   K I  +  REI+VRDA+RFH FKDG CSCGD+W
Sbjct: 840 TKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 179/314 (57%), Gaps = 2/314 (0%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM-PE 193
           +L+      ++  +++ V S ++++G    +    +++  + +    I +  +F  + P 
Sbjct: 24  SLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPT 83

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL 253
            N+   N II  +  +G + +A   + ++ E+     + TF ++I + A +  + +G  +
Sbjct: 84  NNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIV 143

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           H  A++MGF  ++++  ALIDMYS+   +++A+ VF+EMS + +V WN++I+GY  +G+ 
Sbjct: 144 HEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFW 203

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
           E+ALD+Y++ R +G+  D FT S ++  C  L +++     H  + + G   D++  + L
Sbjct: 204 EDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGL 263

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           +  Y K+ R+ +AR VF KM  K+ ++WN +I GY   GR E +V+LF  M ++G  P+ 
Sbjct: 264 LSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDM-IDGFVPDM 322

Query: 434 VTFLAVLSACSRSG 447
           ++  + + AC +SG
Sbjct: 323 LSITSTIRACGQSG 336



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 186/353 (52%), Gaps = 15/353 (4%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I  L  N  + +AL  +  +  E      + T+ ++I++C  +  +     V  + + 
Sbjct: 91  SIIRALTHNGLFTQALGYYTEMR-EKKLQPDAFTFPSVINSCARILDLELGCIVHEHAME 149

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GFE DLY+ N ++ M+ R   + +AR +F+EM  R+ VS N +I+G   +G + +A   
Sbjct: 150 MGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDA--- 206

Query: 219 FLDLWEEF------SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCAL 272
            LD++ +F       DC   T ++++ A   L  +  G  +H    K+G   +V +   L
Sbjct: 207 -LDMYHKFRMTGMVPDC--FTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGL 263

Query: 273 IDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332
           + MY K   + +A+ VF +M+ K +V WNT+I GYA  G  E ++ L+ +M D G   D 
Sbjct: 264 LSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDM 322

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
            + +  IR C +   L+  K  H  L+  GF  D VA + L+D Y+K G +  A+ VFD 
Sbjct: 323 LSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDT 382

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
             CK+ ++WN+LI GY   G  +E +E F+ M +   +P+ VTF+ +LS  S+
Sbjct: 383 TKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKME-RKPDSVTFVLLLSIFSQ 434


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 178/367 (48%), Positives = 253/367 (68%), Gaps = 1/367 (0%)

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           I+R C  +A+LE  KQ HA +++ GF LD+  ++ LVD Y K GRIEDA+ VF K+L  +
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           V SWNA+I+G   HG G+EAV LFEQML  G++PN +TF+ VLS CS +GL + G   F 
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFD 123

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
           SM+RDH I P+A HY+CM++L GR G LDEA   I   P +   ++W +LL ACRV+GN+
Sbjct: 124 SMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNI 183

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
           EL + A E+L  + PE    YV+L NIY ++G+  +A +V + ++ + ++  P CSWIEV
Sbjct: 184 ELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEV 243

Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHS 636
           + + H F+ GD SH Q +EIY  ++ + L++   GY+P    +L DV +EQ++ +L +HS
Sbjct: 244 QNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHHS 303

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           EKLA+AFG+I+T   T +++V++ R+C DCH A K I+ +  REIV+RD  RFHHFKDG 
Sbjct: 304 EKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDGQ 363

Query: 697 CSCGDYW 703
           CSCGDYW
Sbjct: 364 CSCGDYW 370



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 68/214 (31%), Positives = 113/214 (52%), Gaps = 3/214 (1%)

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
            A ++RA A +  +  GKQ+H+  +K+GF  +V VS  L+DMY KCG IEDAQ VF ++ 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
           E     WN +I+G A HG  +EA+ L+ +M  +GVK +  TF +++  C+    ++  + 
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 354 AHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNH 411
               + R HG        S +VD + + G +++A +  ++M  + N   W +L+     H
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 412 GRGEEAVELFEQML-LNGMRPNHVTFLAVLSACS 444
           G  E A    EQ++ L    P     L+ + A +
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAA 214



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 89/184 (48%), Gaps = 2/184 (1%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
            ++ AC  + ++ + K+V + ++  GFE D+ + N ++ M+ +CG + DA+ +F ++ E 
Sbjct: 3   GILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEP 62

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ-L 253
           ++ S N +I+G+   G   EA LLF  + +        TF  ++   +   L+  G+   
Sbjct: 63  DVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYF 122

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGY 312
            S     G          ++D++ + G +++A    ++M  E     W +++    +HG 
Sbjct: 123 DSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGN 182

Query: 313 SEEA 316
            E A
Sbjct: 183 IELA 186


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/565 (35%), Positives = 341/565 (60%), Gaps = 5/565 (0%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           + I +V  + + ++  G   D +M   +L    +C  +  A R+F      N+     +I
Sbjct: 43  KHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALI 102

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
            G + SG+Y +A  L+  +  +     +   A++++A      +  G+++HS ALK+G  
Sbjct: 103 DGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLS 162

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSE----KTTVGWNTIIAGYALHGYSEEALDL 319
            N  V   ++++Y KCG + DA+ VF+EM E    K TV W  +I G+  +     AL+ 
Sbjct: 163 SNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEA 222

Query: 320 YYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379
           +  M+   V+ + FT   ++  C++L +LE  +  H+ + +    L++   +AL++ YS+
Sbjct: 223 FRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSR 282

Query: 380 WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
            G I++A+ VFD+M  ++VI++N +I+G   +G+  +A+ELF  M+   +RP +VTF+ V
Sbjct: 283 CGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGV 342

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499
           L+ACS  GL + G++IF SM+RD+ ++P+  HY CM++LLGR G L+EA+ LIR      
Sbjct: 343 LNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTP 402

Query: 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
              M   LL+AC+++ NLELG+  A+ L          YV+L ++Y SSGK KEAA+V  
Sbjct: 403 DHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRA 462

Query: 560 TLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKT 619
            ++  G++  P CS IEV  + H FL GD  H + + IY K++ +   +   GY PE++ 
Sbjct: 463 KMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEV 522

Query: 620 LLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTG 678
           +L D+++ E+   L+ HSE+LA+ +GLI+T   T ++++++ R+C DCH+AIKLIA +T 
Sbjct: 523 VLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITR 582

Query: 679 REIVVRDASRFHHFKDGMCSCGDYW 703
           R++VVRD +RFH+F++G CSCGDYW
Sbjct: 583 RKVVVRDRNRFHYFENGACSCGDYW 607



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 159/325 (48%), Gaps = 37/325 (11%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE- 193
           +++ AC    ++RE + V S  L  G   +  +R R++ ++ +CG + DARR+F+EMPE 
Sbjct: 135 SILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPED 194

Query: 194 ---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
              ++ V    +I G + + +   A   F  +  E       T   ++ A + L  + +G
Sbjct: 195 VVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIG 254

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           + +HS   K     N+FV  ALI+MYS+CGSI++AQ VFDEM ++  + +NT+I+G +++
Sbjct: 255 RWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMN 314

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G S +A++L+  M    ++  + TF  ++  C+           H GLV  GF +     
Sbjct: 315 GKSRQAIELFRVMIGRRLRPTNVTFVGVLNACS-----------HGGLVDFGFKI----- 358

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
                F+S            D  +   +  +  ++   G  GR EEA +L   M    M 
Sbjct: 359 -----FHSM---------TRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTM---KMT 401

Query: 431 PNHVTFLAVLSACSRSGLSERGWEI 455
           P+H+    +LSAC      E G ++
Sbjct: 402 PDHIMLGTLLSACKMHKNLELGEQV 426



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 64/281 (22%), Positives = 126/281 (44%), Gaps = 4/281 (1%)

Query: 85  LPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLR 144
           +P+  + K +    + I+  V N+    ALE F  ++ E        T   ++SAC  L 
Sbjct: 191 MPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGEN-VRPNEFTIVCVLSACSQLG 249

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           ++   + V SYM     E +L++ N ++ M+ RCG + +A+ +FDEM +R++++ N +I+
Sbjct: 250 ALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMIS 309

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFG 263
           G+  +G   +A  LF  +        + TF  ++ A +   L+  G K  HS     G  
Sbjct: 310 GLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVE 369

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             +     ++D+  + G +E+A  +   M      +   T+++   +H   E    +   
Sbjct: 370 PQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKV 429

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           + D G + D  T+ ++  +       + A Q  A +   G 
Sbjct: 430 LEDRG-QADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 469


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/570 (36%), Positives = 335/570 (58%), Gaps = 1/570 (0%)

Query: 135  ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
            AL SA      +R  +++ +  L      + ++   +L ++ +CG++  A+R+FDEMP  
Sbjct: 531  ALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHP 590

Query: 195  NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
            + V    +I   +D+GD  EA  +  + +       S T   ++ A A +  ++ G+ + 
Sbjct: 591  STVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVW 650

Query: 255  SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
              A + G   +VFV+ A +D+Y KCG +  A+ VFD+M  K  V W  ++ GYA +G+  
Sbjct: 651  RAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPR 710

Query: 315  EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
            EALDL+  M+  G+K D +  +  +  CTRL +L+  +QA   +    F  + V  +AL+
Sbjct: 711  EALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALI 770

Query: 375  DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
            D Y+K G   +A  VF +M  K++I WNA+I G G  G  + A  L  QM  +G++ N  
Sbjct: 771  DMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDN 830

Query: 435  TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
            TF+ +L +C+ +GL + G   F +M++ + I PR  HY CM++LL R GLL EA  L+  
Sbjct: 831  TFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDD 890

Query: 495  APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
             P      +  ALL  C+++ N EL +   ++L  +EP    NYV+L NIY++ G+ ++A
Sbjct: 891  MPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDA 950

Query: 555  AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
            A++   ++ KG+  +PACSW+E + + H F  GD+SH  + +IY+K+D + LE+   GY 
Sbjct: 951  AKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYE 1010

Query: 615  PEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLI 673
            P  + ++ DV DE+++  L +HSEKLA+AF L+ T     +++ ++ R+C DCH AIKL+
Sbjct: 1011 PTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLV 1070

Query: 674  AMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            + +T REI+VRD +RFH F+DG CSC DYW
Sbjct: 1071 SRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100



 Score =  119 bits (299), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 174/380 (45%), Gaps = 22/380 (5%)

Query: 99  SQIEKLVLNKRYREALELFEILE-----FEGGFDVGSSTYDALISACIGLRSIREVKRVF 153
           S +    L   Y +A +L E +      F  G    S T   +++AC  +  +   + V+
Sbjct: 591 STVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVW 650

Query: 154 SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
                 G    +++    + ++V+CG M  AR +FD+M  ++ V+   ++ G   +G   
Sbjct: 651 RAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPR 710

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM----GFGDNVFVS 269
           EA  LFL +  E         A  + A   L  + +G+Q    A++M     F DN  + 
Sbjct: 711 EALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQ----AIRMVDWDEFLDNPVLG 766

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            ALIDMY+KCGS  +A  VF +M +K  + WN +I G  + G+ + A  L  +M  SGVK
Sbjct: 767 TALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVK 826

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARH 388
           ++  TF  ++  CT    ++  ++    + + +     I     +VD  S+ G +++A  
Sbjct: 827 LNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQ 886

Query: 389 VFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
           + D M +  N +   AL+ G   H   E A  + +Q++L  + P +     +LS    + 
Sbjct: 887 LVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLIL--LEPWNSGNYVMLS----NI 940

Query: 448 LSERG-WEIFQSMSRDHKIK 466
            S RG WE    +  D K K
Sbjct: 941 YSNRGRWEDAAKLRLDMKAK 960


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/605 (34%), Positives = 351/605 (58%), Gaps = 3/605 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I  L  N  + EA+++F  +   G F   + T  +++ A   L  IR  K V  + +  G
Sbjct: 94  ISGLAKNDCFVEAIDVFREM-IMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGG 152

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           FE ++++   ++ M+ + G M  AR+LF+ M ERN+V+ N I++G  D G   EA  LF 
Sbjct: 153 FEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFN 212

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +  +       T  ++I AS  +  + VG  +H   ++ G+ ++  +  AL+D+Y    
Sbjct: 213 LMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHN 272

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSMII 339
            ++DA  VF EMS K    W  ++ G++   + + A+  + +M     +K+D      I+
Sbjct: 273 CVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGIL 332

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
             C+   +L+  ++ HA  ++  F  +I   SA++D Y+  G +EDA+  F  M  K+V+
Sbjct: 333 SSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVV 392

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
            WNA+IAG G +G G +A++LF QM  +G+ P+  TF++VL ACS +G+   G +IF  M
Sbjct: 393 CWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHM 452

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
            +   + P   HYAC+I++LGR G LD A++ I   PF+   ++++ LL ACR++GN++L
Sbjct: 453 VKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKL 512

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
           G   ++K++ MEP     YV+L N+Y  +G  +       +LR K ++  P  S IE+ +
Sbjct: 513 GHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQ 572

Query: 580 QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEK 638
           + + F++G++ H Q  +I   +  ++L+I K GYVP    LL DV D+ ++ +L +HSEK
Sbjct: 573 EIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEK 632

Query: 639 LAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCS 698
           +A+AFGL+ T   T ++I ++ R C DCH A K ++ V GR +V++DA+RFH F+DG+CS
Sbjct: 633 MAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCS 692

Query: 699 CGDYW 703
           C DYW
Sbjct: 693 CRDYW 697



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 228/418 (54%), Gaps = 6/418 (1%)

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           L+ ++ ++++ + ++++G   + ++ N ++  +V CG++ DA+++F   P +N+VS  ++
Sbjct: 34  LKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTIL 93

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           I+G+  +  ++EA  +F ++        + T ++++ A A L LI + K +H   ++ GF
Sbjct: 94  ISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGF 153

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             NVFV  AL+DMYSK G +  A+ +F+ MSE+  V WN I++GY+ HG+SEEA+DL+  
Sbjct: 154 EGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNL 213

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           MR  G+ +D +T   +I     +  L+     H  ++R G+  D    +AL+D Y     
Sbjct: 214 MRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNC 273

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLS 441
           ++DA  VF +M  K+V +W  ++ G+ +    + A++ F +ML +  ++ + +  + +LS
Sbjct: 274 VDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILS 333

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           +CS SG  ++G  +  +++            + +I++    G L++A     G   K   
Sbjct: 334 SCSHSGALQQGRRV-HALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVV 392

Query: 502 NMWAALLTACRVN--GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
             W A++    +N  G   +  F   K  G++P++ S +V +L   + +G + E  ++
Sbjct: 393 -CWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDE-STFVSVLYACSHAGMVYEGLQI 448



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 60/108 (55%)

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
           I  +L  L+  +Q HA ++  G   +   +++L++ Y   G + DA+ +F     KNV+S
Sbjct: 30  ILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVS 89

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           W  LI+G   +    EA+++F +M++   +PN VT  +VL A +  GL
Sbjct: 90  WTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGL 137


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/570 (36%), Positives = 335/570 (58%), Gaps = 1/570 (0%)

Query: 135  ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
            AL SA      +R  +++ +  L      + ++   +L ++ +CG++  A+R+FDEMP  
Sbjct: 555  ALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHP 614

Query: 195  NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
            + V    +I   +D+GD  EA  +  + +       S T   ++ A A +  ++ G+ + 
Sbjct: 615  STVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVW 674

Query: 255  SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
              A + G   +VFV+ A +D+Y KCG +  A+ VFD+M  K  V W  ++ GYA +G+  
Sbjct: 675  RAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPR 734

Query: 315  EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
            EALDL+  M+  G+K D +  +  +  CTRL +L+  +QA   +    F  + V  +AL+
Sbjct: 735  EALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALI 794

Query: 375  DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
            D Y+K G   +A  VF +M  K++I WNA+I G G  G  + A  L  QM  +G++ N  
Sbjct: 795  DMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLNDN 854

Query: 435  TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
            TF+ +L +C+ +GL + G   F +M++ + I PR  HY CM++LL R GLL EA  L+  
Sbjct: 855  TFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDD 914

Query: 495  APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
             P      +  ALL  C+++ N EL +   ++L  +EP    NYV+L NIY++ G+ ++A
Sbjct: 915  MPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNIYSNRGRWEDA 974

Query: 555  AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
            A++   ++ KG+  +PACSW+E + + H F  GD+SH  + +IY+K+D + LE+   GY 
Sbjct: 975  AKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDELGLEMKTMGYE 1034

Query: 615  PEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLI 673
            P  + ++ DV DE+++  L +HSEKLA+AF L+ T     +++ ++ R+C DCH AIKL+
Sbjct: 1035 PTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVCSDCHTAIKLV 1094

Query: 674  AMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            + +T REI+VRD +RFH F+DG CSC DYW
Sbjct: 1095 SRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 174/380 (45%), Gaps = 22/380 (5%)

Query: 99  SQIEKLVLNKRYREALELFEILE-----FEGGFDVGSSTYDALISACIGLRSIREVKRVF 153
           S +    L   Y +A +L E +      F  G    S T   +++AC  +  +   + V+
Sbjct: 615 STVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVW 674

Query: 154 SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
                 G    +++    + ++V+CG M  AR +FD+M  ++ V+   ++ G   +G   
Sbjct: 675 RAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVGGYASNGHPR 734

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM----GFGDNVFVS 269
           EA  LFL +  E         A  + A   L  + +G+Q    A++M     F DN  + 
Sbjct: 735 EALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQ----AIRMVDWDEFLDNPVLG 790

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            ALIDMY+KCGS  +A  VF +M +K  + WN +I G  + G+ + A  L  +M  SGVK
Sbjct: 791 TALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVK 850

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARH 388
           ++  TF  ++  CT    ++  ++    + + +     I     +VD  S+ G +++A  
Sbjct: 851 LNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGLLQEAHQ 910

Query: 389 VFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
           + D M +  N +   AL+ G   H   E A  + +Q++L  + P +     +LS    + 
Sbjct: 911 LVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLIL--LEPWNSGNYVMLS----NI 964

Query: 448 LSERG-WEIFQSMSRDHKIK 466
            S RG WE    +  D K K
Sbjct: 965 YSNRGRWEDAAKLRLDMKAK 984


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/499 (37%), Positives = 319/499 (63%), Gaps = 1/499 (0%)

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R++F+ MP+R++VS N +I+G   +G + +A ++  ++        S T ++++   A  
Sbjct: 150 RKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEY 209

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             +  GK++H  A++ G+  +VF+  +LIDMY+KC  ++D+  VF  + +   + WN+II
Sbjct: 210 VNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSII 269

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           AG   +G  +E L  + +M  + +K +H +FS I+  C  L +L   KQ H  ++R  F 
Sbjct: 270 AGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFD 329

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            ++   SALVD Y+K G I  AR +FDKM   +++SW A+I GY  HG   +A+ LF++M
Sbjct: 330 GNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRM 389

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
            + G++PN+V F+AVL+ACS +GL +  W+ F SM++D++I P   HYA + +LLGR G 
Sbjct: 390 EVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGR 449

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L+EA+  I     + T ++W+ LL ACRV+ N+EL +  ++KL+ ++P+ +  YV+L NI
Sbjct: 450 LEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNI 509

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           Y+++G+ K+A ++   +R KG++  PACSWIE+K + H F++GD+SH     I   +  +
Sbjct: 510 YSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVL 569

Query: 605 MLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
           + ++ + GYV +   +L DV+E+++R +L  HSE+LA+ FG+I+T   T +++ ++ R+C
Sbjct: 570 LEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVC 629

Query: 664 CDCHNAIKLIAMVTGREIV 682
            DCH A K I+ + GREIV
Sbjct: 630 VDCHTATKFISKIVGREIV 648



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 156/296 (52%), Gaps = 8/296 (2%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           K +  Y +  G++ D+++ + ++ M+ +C  + D+ R+F  +P+ + +S N IIAG + +
Sbjct: 216 KEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQN 275

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
           G + E    F  +          +F++++ A A L  + +GKQLH   ++  F  NVF++
Sbjct: 276 GMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIA 335

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            AL+DMY+KCG+I  A+ +FD+M     V W  +I GYALHG++ +A+ L+  M   GVK
Sbjct: 336 SALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVK 395

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLV---RHGFGLDIVANSALVDFYSKWGRIEDA 386
            ++  F  ++  C+    ++ A +    +    R   GL+  A  A+ D   + GR+E+A
Sbjct: 396 PNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYA--AVADLLGRVGRLEEA 453

Query: 387 RHVFDKMLCKNVIS-WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
                 M  +   S W+ L+A    H   E A ++ +++    + P ++    +LS
Sbjct: 454 YEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFT--VDPQNIGAYVLLS 507



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 97/214 (45%), Gaps = 3/214 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N  + E L+ F+ +           ++ +++ AC  L ++   K++  Y++ 
Sbjct: 267 SIIAGCVQNGMFDEGLKFFQQM-LIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 325

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           + F+ ++++ + ++ M+ +CG +  AR +FD+M   ++VS   +I G    G   +A  L
Sbjct: 326 SRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISL 385

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYS 277
           F  +  E        F  ++ A +   L+    K  +S          +    A+ D+  
Sbjct: 386 FKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLG 445

Query: 278 KCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALH 310
           + G +E+A     +M  E T   W+T++A   +H
Sbjct: 446 RVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVH 479



 Score = 43.1 bits (100), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 34/64 (53%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M  SG   DH  F  +++ CT +  L   +  H  ++R G G D+   +AL++ YSK+  
Sbjct: 1   MLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWS 60

Query: 383 IEDA 386
           +E+ 
Sbjct: 61  LEEG 64


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/595 (35%), Positives = 326/595 (54%), Gaps = 67/595 (11%)

Query: 176 VRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE---------- 225
           + C  M+ AR+LFDEMP+R+ ++   +I G + + D   A  +F  + E           
Sbjct: 203 ISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMIS 262

Query: 226 -FSDCG--------------------SRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
            +  CG                      T+ T+I A A +    +GKQ+H+  LK     
Sbjct: 263 GYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNP 322

Query: 265 N----VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY------------- 307
           N    + VS ALI +Y K   +++A+ +F  M  +  + WN I++GY             
Sbjct: 323 NHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFF 382

Query: 308 ------------------ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
                             A +G+ +E L L+ +MR  G +   F F+  +  C+ L +LE
Sbjct: 383 EEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALE 442

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
           + +Q HA LV  G+   +   +A++  Y+K G +E A  VF  M   +++SWN++IA  G
Sbjct: 443 NGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALG 502

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            HG G +A+ELF+QML  G+ P+ +TFL VL+ACS +GL E+G   F SM   + I P  
Sbjct: 503 QHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCE 562

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HYA M++L  R G+   A  +I   P K    +W ALL  CR++GN++LG  AAE+L+ 
Sbjct: 563 DHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFK 622

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           + P+    YV+L NIY   G+  E A+V + +R + +R  PACSWIEV+ + HVF+  D 
Sbjct: 623 LMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDD 682

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINT 648
            H +   +YR ++++ LE+ K GY+P+ K +L D++ EQ++  LS HSEKLAV FG++  
Sbjct: 683 VHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKL 742

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
                +++ ++ RIC DCHNA K ++ V  REI+VRD  RFHHFK+G CSC DYW
Sbjct: 743 PPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 137/563 (24%), Positives = 232/563 (41%), Gaps = 146/563 (25%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE----------- 193
           S    + V ++M+++GF+P  +  NR+L M+ +   ++ AR+LF+E+P            
Sbjct: 28  SFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLIT 87

Query: 194 ----------------------RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
                                 R+ V  N +I G   +GD   A  LF  +  +      
Sbjct: 88  AYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDD 147

Query: 232 RTFATMIRASAGLELISVGK-----QLHSCALKMGFG------------------DNVFV 268
            TF +++ A     ++ VG      Q+H   +K G G                    + +
Sbjct: 148 FTFTSVLSAL----VLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGI 203

Query: 269 SCA----------------------LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           SC+                      +I  Y +   +  A+ VF+ M E     WN +I+G
Sbjct: 204 SCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISG 263

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR------ 360
           Y   G  +EAL L  +MR  G++ D  T++ II  C  + S +  KQ HA +++      
Sbjct: 264 YVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILKNELNPN 323

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
           H F L +  ++AL+  Y K  ++++AR +F  M  +N+I+WNA+++GY N GR EEA   
Sbjct: 324 HSFCLSV--SNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSF 381

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
           FE+M +     N +T   ++S  +++G  + G ++F+ M  D                  
Sbjct: 382 FEEMPVK----NLLTLTVMISGLAQNGFGDEGLKLFKQMRLD------------------ 419

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE-KLSNYV 539
                           F+     +A  LTAC V G LE G+    +L  +  E  LS   
Sbjct: 420 ---------------GFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGN 464

Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH-VQTKEIY 598
            ++++Y   G ++ A  V  T+    L      SW        +   G   H V+  E++
Sbjct: 465 AMISMYAKCGVVEAAESVFVTMPSVDL-----VSW-----NSMIAALGQHGHGVKAIELF 514

Query: 599 RKVDRMMLEISKHGYVPEEKTLL 621
              D+M+    K G  P+  T L
Sbjct: 515 ---DQML----KEGVFPDRITFL 530



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 169/355 (47%), Gaps = 42/355 (11%)

Query: 110 YREALELFEILEFEG-GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD---- 164
           ++EAL L   + F G  FD    TY  +ISAC  + S +  K+V +Y+L     P+    
Sbjct: 270 FQEALTLCRKMRFLGIQFD--DITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFC 327

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL-- 222
           L + N ++ ++ +   + +AR++F  MP RN+++ N I++G +++G   EA   F ++  
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPV 387

Query: 223 --------------WEEFSDCGSRTFATM---------------IRASAGLELISVGKQL 253
                            F D G + F  M               + A + L  +  G+QL
Sbjct: 388 KNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQL 447

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           H+  + +G+  ++ V  A+I MY+KCG +E A+ VF  M     V WN++IA    HG+ 
Sbjct: 448 HAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHG 507

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN--S 371
            +A++L+ +M   GV  D  TF  ++  C+    +E  +     ++   +G+    +  +
Sbjct: 508 VKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLE-SYGITPCEDHYA 566

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQML 425
            +VD + + G    AR V D M  K     W AL+AG   HG  +  +E  EQ+ 
Sbjct: 567 RMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLF 621


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/552 (36%), Positives = 321/552 (58%), Gaps = 10/552 (1%)

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL-----E 214
           G + D+ +   +L  + + G + DA ++F  MP+ N+V  N +IAG +           E
Sbjct: 174 GLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANE 233

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
           A  LF ++          TF+++++A + +E    GKQ+H+   K     + F+  AL++
Sbjct: 234 AMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVE 293

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           +YS  GSIED    F    +   V W ++I G+  +G  E  L L++E+  SG K D FT
Sbjct: 294 LYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFT 353

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
            S+++  C  LA+++  +Q HA  ++ G G   +  ++ +  Y+K G I+ A   F +  
Sbjct: 354 ISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETK 413

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
             +++SW+ +I+    HG  +EAV+LFE M  +G+ PNH+TFL VL ACS  GL E G  
Sbjct: 414 NPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLR 473

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
            F+ M +DH I P   H AC+++LLGR G L EA + I  + F+    MW +LL+ACRV+
Sbjct: 474 YFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVH 533

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
              + GK  AE++  +EPE  ++YV+L NIYN +G    A E+   ++ +G++  P  SW
Sbjct: 534 KATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSW 593

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR---V 631
           IEV    H F++GD+SH  ++ IY +++ M+ EI K  Y+ E+  L+ D  E + +   +
Sbjct: 594 IEVGNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYIDEK--LVSDASEPKHKDNSM 651

Query: 632 LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHH 691
           +SYHSEKLAV FG+I+     P++++++ R C  CH  +KL + +  REI++RD  RFH 
Sbjct: 652 VSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHR 711

Query: 692 FKDGMCSCGDYW 703
           F+DG CSCGDYW
Sbjct: 712 FRDGSCSCGDYW 723



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 130/492 (26%), Positives = 225/492 (45%), Gaps = 45/492 (9%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           Y E + LF+         +   T+   +S C     +R  + + + +  +G    + + N
Sbjct: 22  YHEVMNLFKEARMSD-LRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTN 80

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+ +CG +  AR +F+   E + VS N +IAG +  G   E   L + +     + 
Sbjct: 81  SLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNL 140

Query: 230 GSRTFATMIRA--SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
            S    + ++A  S     I  GK LH CA+K+G   +V V  AL+D Y+K G +EDA  
Sbjct: 141 NSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATK 200

Query: 288 VFDEMSEKTTVGWNTIIAGY-----ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           +F  M +   V +N +IAG+         ++ EA+ L++EM+  G+K   FTFS I++ C
Sbjct: 201 IFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKAC 260

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
           + + + E  KQ HA + ++    D    +ALV+ YS  G IED    F      +V+SW 
Sbjct: 261 STIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWT 320

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF------ 456
           +LI G+  +G+ E  + LF ++L +G +P+  T   +LSAC+     + G +I       
Sbjct: 321 SLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKT 380

Query: 457 ------------------------QSMSRDHKIKPRAMHYACMIELLGREGLLDEA---F 489
                                    +M+      P  + ++ MI    + G   EA   F
Sbjct: 381 GIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLF 440

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE---KLYGMEPEKLSNYVVLLNIYN 546
            L++G+        +  +L AC   G +E G    E   K +G+ P  + +   ++++  
Sbjct: 441 ELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITP-NVKHSACIVDLLG 499

Query: 547 SSGKLKEAAEVI 558
            +G+L EA   I
Sbjct: 500 RAGRLAEAESFI 511



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 176/360 (48%), Gaps = 11/360 (3%)

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           MP+RN+VS N +I+G    G Y E   LF +           TF+  +        + +G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           + +H+     G G  V ++ +LIDMY KCG I+ A+ VF+   E  +V WN++IAGY   
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR--LASLEHAKQAHAGLVRHGFGLDIV 368
           G ++E L L  +M   G+ ++ +     ++ C     +S+E  K  H   V+ G  LD+V
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 180

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR-----GEEAVELFEQ 423
             +AL+D Y+K G +EDA  +F  M   NV+ +NA+IAG+            EA+ LF +
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFE 240

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           M   GM+P+  TF ++L ACS     E G +I   + + + ++        ++EL    G
Sbjct: 241 MQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFK-YNLQSDEFIGNALVELYSLSG 299

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY--GMEPEKLSNYVVL 541
            +++        P K     W +L+     NG  E G     +L   G +P++ +  ++L
Sbjct: 300 SIEDGLKCFHSTP-KLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIML 358


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/573 (34%), Positives = 338/573 (58%), Gaps = 2/573 (0%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           +  ++S C     ++E K+   Y+L +G     Y++N ++ M+ RC  +  A ++ D +P
Sbjct: 131 FTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVP 190

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
             ++ S N I++ +++SG   EA  +   + +E     S T+ +++   A +  + +G Q
Sbjct: 191 GDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQ 250

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H+  LK G   +VFVS  LID Y KCG + +A+  FD + ++  V W  ++  Y  +G+
Sbjct: 251 IHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGH 310

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            EE L+L+ +M     + + FTF++++  C  L +L +    H  +V  GF   ++  +A
Sbjct: 311 FEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNA 370

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L++ YSK G I+ + +VF  M+ ++VI+WNA+I GY +HG G++A+ +F+ M+  G  PN
Sbjct: 371 LINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPN 430

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
           +VTF+ VLSAC    L + G+  F  + +   ++P   HY CM+ LLGR GLLDEA   +
Sbjct: 431 YVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFM 490

Query: 493 RGAP-FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           +     K     W  LL AC ++ N  LGK   E +  M+P  +  Y +L N++  + K 
Sbjct: 491 KTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKW 550

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
               ++ + ++ + ++  P  SW++++   HVF+S   +H ++ +I+ KV +++  I   
Sbjct: 551 DGVVKIRKLMKERNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPL 610

Query: 612 GYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           GY P+   +L DV DEQ++  LS+HSEKLA+A+GL+      P++I+++ R+C DCH A+
Sbjct: 611 GYAPDVGVVLHDVEDEQKEGYLSHHSEKLALAYGLMKIPPPGPIRIIKNLRMCDDCHIAV 670

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           KLI+  T R I+VRDA+RFHHF++G+C+C D+W
Sbjct: 671 KLISKATNRLIIVRDANRFHHFREGLCTCNDHW 703



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 158/313 (50%), Gaps = 30/313 (9%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S TY +++  C  +R ++   ++ + +L TG   D+++ + ++  + +CG +++AR+ FD
Sbjct: 229 SVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFD 288

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
            + +RN+V+   ++   + +G + E   LF  +  E +     TFA ++ A A L  ++ 
Sbjct: 289 GLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAY 348

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G  LH   +  GF +++ V  ALI+MYSK G+I+ +  VF  M  +  + WN +I GY+ 
Sbjct: 349 GDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSH 408

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF------ 363
           HG  ++AL ++ +M  +G   ++ TF  ++  C  LA           LV+ GF      
Sbjct: 409 HGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLA-----------LVQEGFYYFDQI 457

Query: 364 --GLDIVAN----SALVDFYSKWGRIEDARHVFDKMLCK---NVISWNALIAG---YGNH 411
               D+       + +V    + G +++A + F K   +   +V++W  L+     + N+
Sbjct: 458 MKKFDVEPGLEHYTCMVALLGRAGLLDEAEN-FMKTTTQVKWDVVAWRTLLNACHIHRNY 516

Query: 412 GRGEEAVELFEQM 424
             G++  E   QM
Sbjct: 517 NLGKQITETVIQM 529



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 154/322 (47%), Gaps = 11/322 (3%)

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCAL---KMGFGDNVFVSCALIDMYSKCGSIEDA 285
           C  +    +++ SA  + +  GK +H+  +   +     ++    +LI++YSKCG  + A
Sbjct: 21  CSLKEVVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCA 80

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM--RDSGVKMDHFTFSMIIRICT 343
           + +FD M ++  V W+ ++ GY   G   E L L+  +   DS    + + F++++  C 
Sbjct: 81  RKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYP-NEYIFTIVLSCCA 139

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
               ++  KQ H  L++ G  L     +AL+  YS+   ++ A  + D +   +V S+N+
Sbjct: 140 DSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNS 199

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           +++     G   EA ++ ++M+   +  + VT+++VL  C++    + G +I   + +  
Sbjct: 200 ILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTG 259

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGK 521
            +    +  + +I+  G+ G +  A     G   +     W A+LTA   NG+ E  L  
Sbjct: 260 LVFDVFVS-STLIDTYGKCGEVLNARKQFDGLRDRNVV-AWTAVLTAYLQNGHFEETLNL 317

Query: 522 FAAEKLYGMEPEKLSNYVVLLN 543
           F   +L    P + + + VLLN
Sbjct: 318 FTKMELEDTRPNEFT-FAVLLN 338


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/601 (35%), Positives = 335/601 (55%), Gaps = 39/601 (6%)

Query: 142 GLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNM 201
           G  S++ +K V + +L  G + D Y+ N+VL      G    + R+F +  E N+   N 
Sbjct: 19  GFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNT 78

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           +I G++ +  + E+  ++  + +E     S TF  +++A A L    +G +LH   +K G
Sbjct: 79  MIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAG 138

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY-------------- 307
              + FV+ +L+ +Y KCG I++A  VFD++ EK    W  II+GY              
Sbjct: 139 CESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFR 198

Query: 308 ------------------------ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
                                   A +G  +EALDL+++M + G + D +    ++  C 
Sbjct: 199 RACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACA 258

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
           RL +LE    A   + R+ F  + V  +AL+D Y+K GR++ A  VF  M  K+++ WNA
Sbjct: 259 RLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNA 318

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
            I+G    G  + A  LF QM  +G+ P+  TF+ +L AC+ +GL + G + F SM R  
Sbjct: 319 AISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVF 378

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            + P   HY CM++LLGR G LDEA  L++  P +    +W ALL  CR++ + +L +  
Sbjct: 379 TLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGV 438

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
            ++L  +EP    NYV+L NIY++S K ++AA++   +  +G++ +P  SWIEV    H 
Sbjct: 439 LKQLIALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHE 498

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVA 642
           FL GD SH  +++IY K+  ++ ++   GYVP    +L D++E+E +  +  HSEKLA+A
Sbjct: 499 FLVGDTSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIA 558

Query: 643 FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           FGLI+T+    +++V++ R+C DCH AIK I+  TGREI+VRD +RFH F DG CSC DY
Sbjct: 559 FGLISTAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDY 618

Query: 703 W 703
           W
Sbjct: 619 W 619



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 169/366 (46%), Gaps = 43/366 (11%)

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           IR   G   +   K +H+  L++G  ++ ++   ++      G+   +  +F +  E   
Sbjct: 14  IRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNI 73

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
             +NT+I G  L+   +E++++Y+ MR  G+  D FTF  +++ C RL   +   + H  
Sbjct: 74  FLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGL 133

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA----------- 406
           +V+ G   D   N++LV  Y K G I++A  VFD +  KNV +W A+I+           
Sbjct: 134 VVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREA 193

Query: 407 ---------------------------GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
                                      GY ++G  +EA++LF +ML  G RP+    + V
Sbjct: 194 IDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGV 253

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499
           L AC+R G  E G      M R+  +    +  A +I++  + G +D A+ + RG   K 
Sbjct: 254 LCACARLGALELGNWASNLMDRNEFLGNPVLGTA-LIDMYAKCGRMDSAWEVFRGMRKKD 312

Query: 500 TKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
              +W A ++   ++G+++   G F   +  G+EP+  + +V LL     +G + E  + 
Sbjct: 313 IV-VWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDG-NTFVGLLCACTHAGLVDEGRQY 370

Query: 558 IRTLRR 563
             ++ R
Sbjct: 371 FNSMER 376



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 189/417 (45%), Gaps = 56/417 (13%)

Query: 89  QMKKPSAGIC-SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
           Q K+P+  +  + I  LVLN  ++E++E++  +  EG     S T+  L+ AC  L   +
Sbjct: 67  QTKEPNIFLFNTMIHGLVLNDSFQESIEIYHSMRKEG-LSPDSFTFPFLLKACARLLDSK 125

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
              ++   ++  G E D ++   ++ ++ +CG + +A ++FD++PE+N+ +   II+G I
Sbjct: 126 LGIKLHGLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYI 185

Query: 208 DSGDYLEAFLLF----------------------------------LDLWEEFSDCGSR- 232
             G   EA  +F                                  LDL+ +  + G R 
Sbjct: 186 GVGKCREAIDMFRRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRP 245

Query: 233 ---TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
                  ++ A A L  + +G    +   +  F  N  +  ALIDMY+KCG ++ A  VF
Sbjct: 246 DCYAMVGVLCACARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVF 305

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
             M +K  V WN  I+G A+ G+ + A  L+ +M  SG++ D  TF  ++  CT    ++
Sbjct: 306 RGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVD 365

Query: 350 HAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAG 407
             +Q    + R      +I     +VD   + G +++A  +   M +  N I W AL+ G
Sbjct: 366 EGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGG 425

Query: 408 YGNHGRGEEAVELFEQMLLNGMRP----NHVTFLAVLSACS--------RSGLSERG 452
              H R  + VE   + L+  + P    N+V    + SA          RS +SERG
Sbjct: 426 CRLH-RDTQLVEGVLKQLI-ALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERG 480


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/545 (37%), Positives = 332/545 (60%), Gaps = 5/545 (0%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D ++ ++++  +++ G   DA  LFDEMP+++ VS N +++G+   G   E   +F  + 
Sbjct: 79  DGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQLGECLSVFCKMK 138

Query: 224 EEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
            +        TF ++I A    +    G  +H CA+K+G    V V  AL++MY K G +
Sbjct: 139 SDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNALVNMYGKFGFV 198

Query: 283 EDAQGVFDEM--SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           E A  +F EM  SEK+ V WN+I+A  A +G   EA + +  MR +G   D  T   +++
Sbjct: 199 ESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDDATMVSLLQ 258

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C         +  H  +   G   ++   + L++ YSK GR+ ++R VF+++   + ++
Sbjct: 259 ACENFPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEEISKPDKVA 318

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLN-GMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           W A++AGY  HG G+EA+E FE+++   GM P+HVTF  +LSACS SGL + G   F+ M
Sbjct: 319 WTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKEGKYFFRVM 378

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
           S  +K++PR  HY+CM++LLGR GLLD+A  LI+  PF+    +W ALL ACRV+ N++L
Sbjct: 379 SDVYKVQPRLDHYSCMVDLLGRCGLLDDAHELIKNMPFEPNSGVWGALLGACRVHRNIDL 438

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
           GK AA+ L  ++P    NY++L N+Y+++G   +A++V   ++ K L     CS+IE   
Sbjct: 439 GKEAAKNLIALDPSDPRNYIMLSNMYSAAGLWNDASKVRTLMKNKVLTRNQGCSFIEHGN 498

Query: 580 QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEK 638
           + H F+  D +H  +  I++K++ +M +I   G+V E +++L DVDE+ +  +++ HSEK
Sbjct: 499 KIHRFVVDDYTHPDSHRIHKKLEEVMKKIQDVGFVHETESILHDVDEEVKIDMITKHSEK 558

Query: 639 LAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCS 698
           +A+A+GL+ T+   PL I+++ RIC DCHN +K ++MV  R I++RD  RFH F  G+CS
Sbjct: 559 IALAYGLLVTNADMPLVIIKNLRICRDCHNTVKFVSMVEKRTIIIRDTKRFHQFSGGLCS 618

Query: 699 CGDYW 703
           CGDYW
Sbjct: 619 CGDYW 623



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 174/370 (47%), Gaps = 45/370 (12%)

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
            +T+I        +S+ + +H+  +K     + F+   L+  Y K G  +DA  +FDEM 
Sbjct: 48  LSTLILHLKSSSSVSICRIIHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMP 107

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMR-DSGVKMDHFTFSMIIRICTRLASLEHAK 352
           +K  V WN++++G A  G   E L ++ +M+ DS +K++ FTF  +I  C    + +   
Sbjct: 108 KKDFVSWNSLVSGLAKIGQLGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEGY 167

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML--CKNVISWNALIAGYGN 410
             H   ++ G   ++   +ALV+ Y K+G +E A  +F +M    K+++SWN+++A    
Sbjct: 168 YVHCCAMKLGLVYEVKVVNALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQ 227

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC--------------------------- 443
           +G   EA   F+ M +NG  P+  T +++L AC                           
Sbjct: 228 NGMPNEAFNCFDMMRVNGFFPDDATMVSLLQACENFPLGRMVEVLHGVIFTCGLDENLTI 287

Query: 444 --------SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA-LIRG 494
                   S+ G      ++F+ +S+  K+   AM     +   G+E +  E F  ++R 
Sbjct: 288 VTTLLNLYSKLGRLNNSRKVFEEISKPDKVAWTAMLAGYAMHGCGKEAI--EFFERIVRE 345

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKF---AAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
              +     +  LL+AC  +G ++ GK+       +Y ++P +L +Y  ++++    G L
Sbjct: 346 EGMEPDHVTFTHLLSACSHSGLVKEGKYFFRVMSDVYKVQP-RLDHYSCMVDLLGRCGLL 404

Query: 552 KEAAEVIRTL 561
            +A E+I+ +
Sbjct: 405 DDAHELIKNM 414



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 164/329 (49%), Gaps = 34/329 (10%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E L +F  ++ +    +   T+ ++ISAC+  ++  E   V    +  G   ++ + N +
Sbjct: 129 ECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNAL 188

Query: 172 LLMHVRCGMMIDARRLFDEMP--ERNLVSCNMIIAGMIDSGDYLEAFLLF--LDLWEEFS 227
           + M+ + G +  A RLF EMP  E+++VS N I+A    +G   EAF  F  + +   F 
Sbjct: 189 VNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFP 248

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
           D    T  ++++A     L  + + LH      G  +N+ +   L+++YSK G + +++ 
Sbjct: 249 D--DATMVSLLQACENFPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRK 306

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLA 346
           VF+E+S+   V W  ++AGYA+HG  +EA++ +  + R+ G++ DH TF+ ++  C+   
Sbjct: 307 VFEEISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACS--- 363

Query: 347 SLEHAKQAHAGLVRHG-FGLDIVAN-----------SALVDFYSKWGRIEDARHVFDKM- 393
                   H+GLV+ G +   ++++           S +VD   + G ++DA  +   M 
Sbjct: 364 --------HSGLVKEGKYFFRVMSDVYKVQPRLDHYSCMVDLLGRCGLLDDAHELIKNMP 415

Query: 394 LCKNVISWNALIAG---YGNHGRGEEAVE 419
              N   W AL+     + N   G+EA +
Sbjct: 416 FEPNSGVWGALLGACRVHRNIDLGKEAAK 444


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/593 (35%), Positives = 349/593 (58%), Gaps = 4/593 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL +F  L      D  S+T+   +SAC  L  +   + V       G+  D+++ + V
Sbjct: 87  EALRVFRALPPAARPD--STTFTLALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSV 144

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L ++ +CG M DA ++FD M +R+ V+ + ++ G +++G  ++A  +++ +  +  +   
Sbjct: 145 LNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADE 204

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
                +++A A      +G  +H   L+     +V +S +L+DMY+K G  + A+ VF+ 
Sbjct: 205 VVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFEL 264

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M  +  V W+ +I+  A +G ++EAL L+  M+ SG+  +       +  C+ L  L+  
Sbjct: 265 MPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHPNSGPVVGALLACSDLGLLKLG 324

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K  H G +     LD +  +A++D YSK G +  A+ +FDK++ +++ISWN +IA  G H
Sbjct: 325 KSIH-GFILRTLELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAH 383

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           GRG +A+ LF++M  N +RP+H TF ++LSA S SGL E G   F  M  ++ I+P   H
Sbjct: 384 GRGRDALSLFQEMKRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKH 443

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
             C+++LL R GL++EA  L+     K T ++  ALL+ C  N  LELG+  AEK+  ++
Sbjct: 444 LVCIVDLLARSGLVEEANGLVASLHSKPTISILVALLSGCLNNNKLELGESTAEKILELQ 503

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P  +    ++ N+Y ++    +  EV + ++  G +  P CS IE++   H F+  DQSH
Sbjct: 504 PGDVGVLALVSNLYAAAKNWYKVREVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSH 563

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSD 650
            Q ++I + V ++  E+ K GY+P+ + +  D++E  ++++LS HSE+LA AFGL+NTS 
Sbjct: 564 PQHRQILQMVMKLDSEMRKMGYIPKTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSP 623

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            T L ++++ R+C DCH+AIK ++ +  REIVVRDA RFHHFKDG CSCGDYW
Sbjct: 624 GTRLVVIKNLRVCGDCHDAIKYMSKIADREIVVRDAKRFHHFKDGACSCGDYW 676


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 224/601 (37%), Positives = 343/601 (57%), Gaps = 15/601 (2%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA  LF  +  EG     S +   L++A  G  S+R  + +    L  G + D+ + N +
Sbjct: 309 EAALLFARMLHEGI----SPSKVTLVNASTGCSSLRFGRMIHGCALEKGLDRDIVLGNAL 364

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L M+ RCG   +AR LF  +P  N VS N +IAG    G    A  LF  +  E      
Sbjct: 365 LDMYTRCGSPEEARHLFKRIP-CNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVR 423

Query: 232 RTFATMIRASAG----LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
            T+  ++ A A        ++ G++LHS  +  G+     +  A++ MY+ CG+I++A  
Sbjct: 424 ATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAA 483

Query: 288 VFDE--MSEK-TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
            F    M ++   V WN II+  + HG+ + AL  +  M   GV  +  T   ++  C  
Sbjct: 484 SFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAG 543

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-KNVISWNA 403
            A+L   +  H  L   G   ++   +AL   Y + G +E AR +F+K+   ++V+ +NA
Sbjct: 544 AAALTEGEIVHDHLRHSGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNA 603

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           +IA Y  +G   EA++LF +M   G RP+  +F++VLSACS  GL++ GWEIF+SM + +
Sbjct: 604 MIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADEGWEIFRSMRQSY 663

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            I P   HYAC +++LGR G L +A  LIR    K T  +W  LL ACR   +++ G+ A
Sbjct: 664 GIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGACRKYRDVDRGRLA 723

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
              +  ++P   S YVVL NI   +GK  EAAEV   +  +GLR     SWIE+K + H 
Sbjct: 724 NSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKEAGKSWIEIKSRVHE 783

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVA 642
           F++GD+SH +++EIYR+++R+  EI + GYVP+ + +L  VDE E +R+L  HSE+LA+A
Sbjct: 784 FVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEKERLLCQHSERLAIA 843

Query: 643 FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
            G++++S  T ++++++ R+C DCHNA K I+ +  +EIVVRD  RFHHF DG CSCGDY
Sbjct: 844 LGVMSSSTDT-VRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHRFHHFVDGSCSCGDY 902

Query: 703 W 703
           W
Sbjct: 903 W 903



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 133/470 (28%), Positives = 231/470 (49%), Gaps = 31/470 (6%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           + A+ +F  ++ EG     + T+ A++ AC  L  + + + + ++++ +G +    + N 
Sbjct: 110 KRAIGMFHRMQQEG-VRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANL 168

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           +L ++  CG +  A  LF++M ER+LVS N  IA    SGD   A  LF  +  E    G
Sbjct: 169 LLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSGDLGIALELFQRMQLE----G 223

Query: 231 SR-TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
            R    T++ A      I   + +H    + G    + VS AL   Y++ G +  A+ VF
Sbjct: 224 VRPARITLVIALTVCATIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVF 283

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           D  +E+  V WN ++  YA HG+  EA  L+  M   G+     T   ++   T  +SL 
Sbjct: 284 DRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVT---LVNASTGCSSLR 340

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             +  H   +  G   DIV  +AL+D Y++ G  E+ARH+F ++ C N +SWN +IAG  
Sbjct: 341 FGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIPC-NAVSWNTMIAGSS 399

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
             G+ + AVELF++M L GM P   T+L +L A + +       E  ++M+   K+  R 
Sbjct: 400 QKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNP------EEARAMAEGRKLHSRI 453

Query: 470 MH--YA-------CMIELLGREGLLDEAFALIRGAPFKTTKNM--WAALLTACRVNGNLE 518
           +   YA        ++++    G +DEA A  +    +   ++  W A++++   +G+ +
Sbjct: 454 VSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGK 513

Query: 519 --LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
             LG F    L+G+ P +++  V +L+    +  L E   V   LR  G+
Sbjct: 514 RALGFFRRMDLHGVAPNQIT-CVAVLDACAGAAALTEGEIVHDHLRHSGM 562



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 224/463 (48%), Gaps = 25/463 (5%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLR---SIREVKRVFSYMLSTGFEPDLYMRN 169
           ALELF+ ++ EG          A I+  I L    +IR+ + +   +  +G E  L +  
Sbjct: 212 ALELFQRMQLEG-------VRPARITLVIALTVCATIRQAQAIHFIVRESGLEQTLVVST 264

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            +   + R G +  A+ +FD   ER++VS N ++      G   EA LLF  +  E    
Sbjct: 265 ALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGI-- 322

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
            S +  T++ AS G   +  G+ +H CAL+ G   ++ +  AL+DMY++CGS E+A+ +F
Sbjct: 323 -SPSKVTLVNASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLF 381

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT----RL 345
             +     V WNT+IAG +  G  + A++L+  M+  G+     T+  ++          
Sbjct: 382 KRIP-CNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEA 440

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK---NVISWN 402
            ++   ++ H+ +V  G+  +    +A+V  Y+  G I++A   F +   +   +V+SWN
Sbjct: 441 RAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWN 500

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           A+I+    HG G+ A+  F +M L+G+ PN +T +AVL AC+ +     G EI     R 
Sbjct: 501 AIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEG-EIVHDHLRH 559

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG--NLELG 520
             ++        +  + GR G L+ A  +      +    ++ A++ A   NG     L 
Sbjct: 560 SGMESNLFVATALASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALK 619

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
            F   +  G  P++ S +V +L+  +  G   E  E+ R++R+
Sbjct: 620 LFWRMQQEGSRPDEQS-FVSVLSACSHGGLADEGWEIFRSMRQ 661



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 196/409 (47%), Gaps = 19/409 (4%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           R + + +R+ + ++S G E +L   N +L ++++C  + D   +F  +  R+  S   II
Sbjct: 43  RLLSQGRRIHARIVSLGLEEELG--NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTII 100

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
               + G    A  +F  + +E   C + TF  +++A A L  +S G+ +H+  ++ G  
Sbjct: 101 TAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLK 160

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
               ++  L+ +Y  CG +  A  +F++M E+  V WN  IA  A  G    AL+L+  M
Sbjct: 161 GKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANAQSGDLGIALELFQRM 219

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
           +  GV+    T  + + +C   A++  A+  H  +   G    +V ++AL   Y++ G +
Sbjct: 220 QLEGVRPARITLVIALTVC---ATIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHL 276

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
             A+ VFD+   ++V+SWNA++  Y  HG   EA  LF +ML  G+ P+ VT +   + C
Sbjct: 277 YQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGC 336

Query: 444 S--RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           S  R G    G  + + + RD  +         ++++  R G  +EA  L +  P     
Sbjct: 337 SSLRFGRMIHGCALEKGLDRDIVLGN------ALLDMYTRCGSPEEARHLFKRIPCNAVS 390

Query: 502 NMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
             W  ++      G ++  +  F   +L GM P + + Y+ LL    S+
Sbjct: 391 --WNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVR-ATYLNLLEAVASN 436



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 157/319 (49%), Gaps = 16/319 (5%)

Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
           ++RA+    L+S G+++H+  + +G  + +     L+ +Y KC S+ D + VF  +  + 
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIVSLGLEEEL--GNHLLRLYLKCESLGDVEEVFSRLEVRD 92

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
              W TII  Y  HG ++ A+ +++ M+  GV+ D  TF  +++ C RL  L   +  HA
Sbjct: 93  EASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHA 152

Query: 357 GLVRHGF-GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
            +V  G  G  ++AN  L+  Y   G +  A  +F+KM  ++++SWNA IA     G   
Sbjct: 153 WIVESGLKGKSVLAN-LLLHIYGSCGCVASAMLLFEKME-RDLVSWNAAIAANAQSGDLG 210

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
            A+ELF++M L G+RP  +T +  L+ C+    + R  +    + R+  ++   +    +
Sbjct: 211 IALELFQRMQLEGVRPARITLVIALTVCA----TIRQAQAIHFIVRESGLEQTLVVSTAL 266

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL-ELGKFAAEKLY-GMEPE 533
                R G L +A  +   A  +   + W A+L A   +G++ E     A  L+ G+ P 
Sbjct: 267 ASAYARLGHLYQAKEVFDRAAERDVVS-WNAMLGAYAQHGHMSEAALLFARMLHEGISPS 325

Query: 534 KLSNYVVLLNIYNSSGKLK 552
           K    V L+N       L+
Sbjct: 326 K----VTLVNASTGCSSLR 340


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/600 (33%), Positives = 344/600 (57%), Gaps = 23/600 (3%)

Query: 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186
           D+   TY +++  C  L+SI++ +R+ S + S   E D  + ++++ M+V CG + + RR
Sbjct: 98  DLELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRR 157

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF--------------LDLWEEFSDCGSR 232
           +FD++    +   N+++ G    G++ E+  LF                L++E  D    
Sbjct: 158 IFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVI 217

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNV--------FVSCALIDMYSKCGSIED 284
           ++ +MI       L   G  L    L +G   ++         ++  L+DMYSK G++  
Sbjct: 218 SWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNS 277

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A  VF+ M E++ V W ++IAGYA  G S+ ++ L++EM    +  +  T + I+  C  
Sbjct: 278 AIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACAS 337

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           LA+LE  ++ H  ++R+GF LD    +ALVD Y K G +  AR +FD +  K+++SW  +
Sbjct: 338 LAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVM 397

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           IAGYG HG G EA+  F +M  +G+ P+ V+F+++L ACS SGL + GW  F  M  +  
Sbjct: 398 IAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCC 457

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           I+P++ HYAC+++LL R G L +A+  I+  P +    +W ALL  CR+  +++L +  A
Sbjct: 458 IEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVA 517

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
           E ++ +EPE    YV+L NIY  + K +E  ++   + R+GLR  P CSWIE+K + H+F
Sbjct: 518 EHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIF 577

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAF 643
           ++GD SH    +I   + +    + + G+ P+ +  L   D+ E+ + L  HSEK+A+AF
Sbjct: 578 VTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAF 637

Query: 644 GLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           G+++      +++ ++ R+C DCH   K ++ +  R+I++RD++RFHHFKDG CSC  +W
Sbjct: 638 GILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 697


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/608 (34%), Positives = 335/608 (55%), Gaps = 36/608 (5%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           +Y  +     GL  ++   +V ++ML  G +P   + ++++  +   G +  +  +F+ +
Sbjct: 72  SYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGI 131

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            E + +  N +I      G        +  +          TF  ++++S  L  + +GK
Sbjct: 132 GEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSVWMGK 191

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS------------------ 293
            +H   L++G   +++V+ +LI +Y KCG I DA  VFD M+                  
Sbjct: 192 CVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSG 251

Query: 294 -------------EKTTVGWNTIIAGYALHGYSEEALDLYYEM--RDSGVKMDHFTFSMI 338
                         +  V W T+I+GY+  G +++AL L+ EM   DSGV+ +  T   +
Sbjct: 252 CIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSV 311

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--K 396
           +  C +L++LE  +Q H    R G   +     AL   Y+K G + DAR+ FDK+    K
Sbjct: 312 LPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEK 371

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           N+I+WN +I  Y ++G G +AV  F +M+  G++P+ +TF  +LS CS SGL + G + F
Sbjct: 372 NLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYF 431

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
             MS  + I PR  HYAC+ +LLGR G L EA  L+   P     ++W +LL ACR + N
Sbjct: 432 NHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRN 491

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
           LE+ + AA KL+ +EPE   NYV+L N+Y  +G+ +E  ++   ++ +G +  P CSWIE
Sbjct: 492 LEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIE 551

Query: 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYH 635
           +  + H+FL GD SH Q KEIY  ++ +  ++   GY P+   +L D+ E+E+   L  H
Sbjct: 552 INGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAH 611

Query: 636 SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
           SEKLAVAFG++NT   T L++ ++ RIC DCH A+  I+ + GRE++VRD +RFHHFK G
Sbjct: 612 SEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGG 671

Query: 696 MCSCGDYW 703
            CSCGDYW
Sbjct: 672 CCSCGDYW 679



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 156/343 (45%), Gaps = 63/343 (18%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           GF     T+  ++ + + L S+   K V   +L  G + DLY+   +++++ +CG + DA
Sbjct: 166 GFTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDA 225

Query: 185 RRLFDE-------------------------------MPERNLVSCNMIIAGMIDSGDYL 213
            ++FD                                MP RN+VS   +I+G   SG   
Sbjct: 226 GKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQ 285

Query: 214 EAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
           +A  LF ++ +E  D G R    T  +++ A A L  +  G+Q+H  A +MG   N  V 
Sbjct: 286 QALSLFDEMVKE--DSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVL 343

Query: 270 CALIDMYSKCGSIEDAQGVFDEM--SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
            AL  MY+KCGS+ DA+  FD++  +EK  + WNT+I  YA +G+  +A+  + EM  +G
Sbjct: 344 IALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAG 403

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF------------GLDIVANSALVD 375
           ++ D  TF+ ++  C+           H+GLV  G                +   + + D
Sbjct: 404 IQPDDITFTGLLSGCS-----------HSGLVDVGLKYFNHMSTTYSINPRVEHYACVAD 452

Query: 376 FYSKWGRIEDARHVFDKMLCKNVIS-WNALIAGYGNHGRGEEA 417
              + GR+ +A  +  +M      S W +L+A    H   E A
Sbjct: 453 LLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMA 495



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 88/201 (43%), Gaps = 5/201 (2%)

Query: 111 REALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           ++AL LF E+++ + G      T  +++ AC  L ++   +++       G   +  +  
Sbjct: 285 QQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLI 344

Query: 170 RVLLMHVRCGMMIDARRLFDEM--PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            +  M+ +CG ++DAR  FD++   E+NL++ N +I      G  L+A   F ++ +   
Sbjct: 345 ALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGI 404

Query: 228 DCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                TF  ++   +   L+ VG K  +  +        V     + D+  + G + +A 
Sbjct: 405 QPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEAS 464

Query: 287 GVFDEMSEKTTVG-WNTIIAG 306
            +  EM        W +++A 
Sbjct: 465 KLVGEMPMPAGPSIWGSLLAA 485


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/541 (37%), Positives = 321/541 (59%), Gaps = 3/541 (0%)

Query: 166 YMRNRVLLM-HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           YM + +L+  +VR G +++AR++FDEMP+R L + N +IAG+I      E   LF ++  
Sbjct: 23  YMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHG 82

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                   T  ++   SAGL  +S+G+Q+H   +K G   ++ V+ +L  MY + G ++D
Sbjct: 83  LGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD 142

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
            + V   M  +  V WNT+I G A +G  E  L LY  M+ SG + +  TF  ++  C+ 
Sbjct: 143 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 202

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           LA     +Q HA  ++ G    +   S+L+  YSK G + DA   F +   ++ + W+++
Sbjct: 203 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSM 262

Query: 405 IAGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           I+ YG HG+G+EA+ELF  M     M  N V FL +L ACS SGL ++G E+F  M   +
Sbjct: 263 ISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKY 322

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
             KP   HY C+++LLGR G LD+A A+IR  P KT   +W  LL+AC ++ N E+ +  
Sbjct: 323 GFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRV 382

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
            +++  ++P   + YV+L N++ S+ + ++ +EV +++R K ++     SW E K + H 
Sbjct: 383 FKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQ 442

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVA 642
           F  GD+S  ++KEIY  +  + LE+   GY P+  ++L D+DE+E+   L  HSEKLAVA
Sbjct: 443 FKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVA 502

Query: 643 FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           F L+   +  P++I+++ R+C DCH A K I+++  REI +RD SRFHHF +G CSCGDY
Sbjct: 503 FALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDY 562

Query: 703 W 703
           W
Sbjct: 563 W 563



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 154/335 (45%), Gaps = 40/335 (11%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           N   S  LI+ Y + G + +A+ VFDEM ++    WN +IAG     ++EE L L+ EM 
Sbjct: 22  NYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMH 81

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
             G   D +T   +      L S+   +Q H   +++G  LD+V NS+L   Y + G+++
Sbjct: 82  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQ 141

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           D   V   M  +N+++WN LI G   +G  E  + L++ M ++G RPN +TF+ VLS+CS
Sbjct: 142 DGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCS 201

Query: 445 RSGLSERGWEIFQSMSR------------------------------DHKIKPRAMHYAC 474
              +  +G +I     +                                +     + ++ 
Sbjct: 202 DLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSS 261

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNM----WAALLTACRVNG----NLELGKFAAEK 526
           MI   G  G  DEA  L      +T   +    +  LL AC  +G     LEL     EK
Sbjct: 262 MISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEK 321

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            YG +P  L +Y  ++++   +G L +A  +IR++
Sbjct: 322 -YGFKP-GLKHYTCVVDLLGRAGCLDQAEAIIRSM 354



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 187/391 (47%), Gaps = 16/391 (4%)

Query: 85  LPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEG-GFDVGSSTYDALISACIGL 143
           +PD ++   +A I   I+    N+   E L LF   E  G GF     T  ++ S   GL
Sbjct: 49  MPDRKLTTWNAMIAGLIQ-FEFNE---EGLSLFR--EMHGLGFSPDEYTLGSVFSGSAGL 102

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           RS+   +++  Y +  G E DL + + +  M++R G + D   +   MP RNLV+ N +I
Sbjct: 103 RSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI 162

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSR--TFATMIRASAGLELISVGKQLHSCALKMG 261
            G   +G      +L+L    + S C     TF T++ + + L +   G+Q+H+ A+K+G
Sbjct: 163 MGNAQNG--CPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIG 220

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
               V V  +LI MYSKCG + DA   F E  ++  V W+++I+ Y  HG  +EA++L+ 
Sbjct: 221 ASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFN 280

Query: 322 EMRD-SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV-RHGFGLDIVANSALVDFYSK 379
            M + + ++++   F  ++  C+     +   +    +V ++GF   +   + +VD   +
Sbjct: 281 TMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGR 340

Query: 380 WGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
            G ++ A  +   M  K +++ W  L++    H   E A  +F+++L   + PN      
Sbjct: 341 AGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEIL--QIDPNDSACYV 398

Query: 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
           +L+    S    R     +   RD  +K  A
Sbjct: 399 LLANVHASAKRWRDVSEVRKSMRDKNVKKEA 429


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/541 (37%), Positives = 321/541 (59%), Gaps = 3/541 (0%)

Query: 166 YMRNRVLLM-HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           YM + +L+  +VR G +++AR++FDEMP+R L + N +IAG+I      E   LF ++  
Sbjct: 25  YMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHG 84

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                   T  ++   SAGL  +S+G+Q+H   +K G   ++ V+ +L  MY + G ++D
Sbjct: 85  LGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQD 144

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
            + V   M  +  V WNT+I G A +G  E  L LY  M+ SG + +  TF  ++  C+ 
Sbjct: 145 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 204

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           LA     +Q HA  ++ G    +   S+L+  YSK G + DA   F +   ++ + W+++
Sbjct: 205 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSM 264

Query: 405 IAGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           I+ YG HG+G+EA+ELF  M     M  N V FL +L ACS SGL ++G E+F  M   +
Sbjct: 265 ISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKY 324

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
             KP   HY C+++LLGR G LD+A A+IR  P KT   +W  LL+AC ++ N E+ +  
Sbjct: 325 GFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRV 384

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
            +++  ++P   + YV+L N++ S+ + ++ +EV +++R K ++     SW E K + H 
Sbjct: 385 FKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQ 444

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVA 642
           F  GD+S  ++KEIY  +  + LE+   GY P+  ++L D+DE+E+   L  HSEKLAVA
Sbjct: 445 FKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVA 504

Query: 643 FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           F L+   +  P++I+++ R+C DCH A K I+++  REI +RD SRFHHF +G CSCGDY
Sbjct: 505 FALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGDY 564

Query: 703 W 703
           W
Sbjct: 565 W 565



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 154/335 (45%), Gaps = 40/335 (11%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           N   S  LI+ Y + G + +A+ VFDEM ++    WN +IAG     ++EE L L+ EM 
Sbjct: 24  NYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMH 83

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
             G   D +T   +      L S+   +Q H   +++G  LD+V NS+L   Y + G+++
Sbjct: 84  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQ 143

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           D   V   M  +N+++WN LI G   +G  E  + L++ M ++G RPN +TF+ VLS+CS
Sbjct: 144 DGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCS 203

Query: 445 RSGLSERGWEIFQSMSR------------------------------DHKIKPRAMHYAC 474
              +  +G +I     +                                +     + ++ 
Sbjct: 204 DLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSS 263

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNM----WAALLTACRVNG----NLELGKFAAEK 526
           MI   G  G  DEA  L      +T   +    +  LL AC  +G     LEL     EK
Sbjct: 264 MISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEK 323

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            YG +P  L +Y  ++++   +G L +A  +IR++
Sbjct: 324 -YGFKP-GLKHYTCVVDLLGRAGCLDQAEAIIRSM 356



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 187/391 (47%), Gaps = 16/391 (4%)

Query: 85  LPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEG-GFDVGSSTYDALISACIGL 143
           +PD ++   +A I   I+    N+   E L LF   E  G GF     T  ++ S   GL
Sbjct: 51  MPDRKLTTWNAMIAGLIQ-FEFNE---EGLSLFR--EMHGLGFSPDEYTLGSVFSGSAGL 104

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           RS+   +++  Y +  G E DL + + +  M++R G + D   +   MP RNLV+ N +I
Sbjct: 105 RSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI 164

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSR--TFATMIRASAGLELISVGKQLHSCALKMG 261
            G   +G      +L+L    + S C     TF T++ + + L +   G+Q+H+ A+K+G
Sbjct: 165 MGNAQNG--CPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIG 222

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
               V V  +LI MYSKCG + DA   F E  ++  V W+++I+ Y  HG  +EA++L+ 
Sbjct: 223 ASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFN 282

Query: 322 EMRD-SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV-RHGFGLDIVANSALVDFYSK 379
            M + + ++++   F  ++  C+     +   +    +V ++GF   +   + +VD   +
Sbjct: 283 TMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGR 342

Query: 380 WGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
            G ++ A  +   M  K +++ W  L++    H   E A  +F+++L   + PN      
Sbjct: 343 AGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEIL--QIDPNDSACYV 400

Query: 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
           +L+    S    R     +   RD  +K  A
Sbjct: 401 LLANVHASAKRWRDVSEVRKSMRDKNVKKEA 431


>gi|413946615|gb|AFW79264.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 682

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/598 (35%), Positives = 336/598 (56%), Gaps = 9/598 (1%)

Query: 109 RYREALELFEILEFEGGFDVGSSTY--DALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           R++E+L+L  +++F      G + Y   A +SA   +RS    ++   Y +  GF    Y
Sbjct: 91  RHKESLQLLRVVDF------GMNEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQRY 144

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N VL M+ +C  M DA ++F+ +   +  + N +I G +D G    +  +  ++  E 
Sbjct: 145 VFNAVLYMYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEA 204

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 ++  ++   A ++   +G Q+H+ ALK     NV+V  AL+DMY KC  + DA 
Sbjct: 205 EKWDYVSYVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDAN 264

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
             F+ + EK  V W  ++  Y  +   E+AL L+ +M   GV+ + FT+++ +  C  LA
Sbjct: 265 RAFEVLPEKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLA 324

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           +L       A +++ G    ++ ++AL++ YSK G IEDA  VF  M  ++V+SWN +I 
Sbjct: 325 ALRTGNALGACVMKTGHWDHLLVSNALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIIT 384

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GY +HG   E +E F  ML   + P++VTF+ VLSAC++ GL +  +    +M ++  I 
Sbjct: 385 GYAHHGLAREGMEAFHSMLSAAVIPSYVTFVGVLSACAQLGLVDEAFYYLNTMMKEVGIT 444

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P   HY CM+ LL R G LDEA   I      T    W +LL +C+V  N  LG   AE+
Sbjct: 445 PGKEHYTCMVGLLCRVGRLDEAERFIVNNCIGTDVVAWRSLLNSCQVYKNYGLGHRVAEQ 504

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           +  +EP  +  YV+L N+Y  + +     +V + +R + +R  P  SWI V    HVF S
Sbjct: 505 ILQLEPSDVGTYVLLSNMYAKANRWDGVVKVRKHMRERAVRKSPGVSWIHVGSDVHVFTS 564

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGL 645
            ++ H Q  +I +K++ ++ +I   GYVP    +L D+ DE+++  L YHSEKLA+AFGL
Sbjct: 565 EEKVHPQMDQIAKKLEELIDQIKAIGYVPNFAVVLHDIDDERKEEHLMYHSEKLALAFGL 624

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I+T     + I+++ RIC DCH AIKLI++VT R+IVVRDA RFH  + G+CSC DYW
Sbjct: 625 IHTPKGATIHIMKNLRICDDCHVAIKLISVVTSRKIVVRDAVRFHCIEGGICSCNDYW 682



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 195/403 (48%), Gaps = 23/403 (5%)

Query: 157 LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF 216
           L T    D+ + N ++  + +CG +  AR +FD MP RN VS N++++G   SG + E+ 
Sbjct: 37  LITAAHFDVVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMSGYASSGRHKESL 96

Query: 217 LLFLDLWEEFSDCGSRTF--ATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
            L         D G   +  +  + A+A +    +G+Q H  A+K GF +  +V  A++ 
Sbjct: 97  QLL-----RVVDFGMNEYVLSAAVSATANVRSYDMGRQCHGYAVKAGFAEQRYVFNAVLY 151

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MY +C  +EDA  VF+ +S      +N++I GY   G  + +L +   M     K D+ +
Sbjct: 152 MYCQCAHMEDASKVFESVSGFDAFAFNSMINGYLDRGQLDGSLGIVRNMTGEAEKWDYVS 211

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           +  ++  C  +       Q HA  ++    L++   SALVD Y K   + DA   F+ + 
Sbjct: 212 YVAVLGHCASMKDSVLGAQVHAQALKKRLELNVYVGSALVDMYGKCDHVHDANRAFEVLP 271

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS-----RSGLS 449
            KNV+SW A++  Y  +   E+A++LF  M + G++PN  T+   L++C+     R+G +
Sbjct: 272 EKNVVSWTAVMTAYTQNELYEDALQLFLDMEMEGVQPNEFTYAVALNSCAGLAALRTG-N 330

Query: 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509
             G  + ++   DH +   A     ++ +  + G +++A  +    P +   + W  ++T
Sbjct: 331 ALGACVMKTGHWDHLLVSNA-----LMNMYSKSGSIEDAHRVFISMPLRDVVS-WNLIIT 384

Query: 510 ACRVNGNLELGKFAAEKLYGM-EPEKLSNYVVLLNIYNSSGKL 551
               +G   L +   E  + M     + +YV  + + ++  +L
Sbjct: 385 GYAHHG---LAREGMEAFHSMLSAAVIPSYVTFVGVLSACAQL 424



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 1/141 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N+ Y +AL+LF  +E E G      TY   +++C GL ++R    + + ++ TG    L 
Sbjct: 288 NELYEDALQLFLDMEME-GVQPNEFTYAVALNSCAGLAALRTGNALGACVMKTGHWDHLL 346

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N ++ M+ + G + DA R+F  MP R++VS N+II G    G   E    F  +    
Sbjct: 347 VSNALMNMYSKSGSIEDAHRVFISMPLRDVVSWNLIITGYAHHGLAREGMEAFHSMLSAA 406

Query: 227 SDCGSRTFATMIRASAGLELI 247
                 TF  ++ A A L L+
Sbjct: 407 VIPSYVTFVGVLSACAQLGLV 427



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 1/74 (1%)

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           L   K  HA L+      D+V ++ L+ FY+K GR+  AR VFD M  +N +S N L++G
Sbjct: 27  LSKGKALHARLITAAH-FDVVLHNNLISFYAKCGRVGLARTVFDAMPFRNAVSANLLMSG 85

Query: 408 YGNHGRGEEAVELF 421
           Y + GR +E+++L 
Sbjct: 86  YASSGRHKESLQLL 99


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/607 (33%), Positives = 351/607 (57%), Gaps = 10/607 (1%)

Query: 100 QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           ++ +L     + E++ L+  +    G    + ++  ++ +C  L      +++  +++  
Sbjct: 21  RLRELAYQSLFTESISLYRSM-LRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVIRG 79

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL--VSCNMIIAGMIDSGDYLEAFL 217
           G E + ++   ++ M+ +CG++ DAR++F+E P  +   V  N +I+G   +    +A  
Sbjct: 80  GCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDAAF 139

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           +F  + E      S T   ++      E + +G+ LH   +K G    V V  + I MY 
Sbjct: 140 MFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYM 199

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           KCGS+E  + +FDEM  K  + WN +I+GY+ +G + + L+L+ +M+ SGV  D FT   
Sbjct: 200 KCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVS 259

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           ++  C  L + +  ++    +  +GF  ++  ++AL+  Y++ G +  AR VFD M  K+
Sbjct: 260 VLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKS 319

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           ++SW A+I  YG HG GE  + LF+ M+  G+RP+   F+ VLSACS SGL+++G E+F+
Sbjct: 320 LVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFR 379

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
           +M R++K++P   HY+C+++LLGR G LDEA   I   P +    +W ALL AC+++ N+
Sbjct: 380 AMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIHKNV 439

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT-LRRKGLRMLPACSWIE 576
           ++ + A  K+   EP  +  YV++ NIY+ S K +E    IR  +R +  R  P  S++E
Sbjct: 440 DMAELAFAKVIEFEPMNIGYYVLMSNIYSDS-KNQEGIWRIRVMMRERAFRKKPGYSYVE 498

Query: 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHS 636
            K + H+FL+GD+SH QT+E++R +D +   + +         +  D  E+       HS
Sbjct: 499 HKGKVHLFLAGDRSHEQTEEVHRMLDELETSVMELA-----GNMDCDRGEEVSSTTREHS 553

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           E+LA+AFG++N+   T + ++++ R+C DCH  IKL++ +  R  VVRDASRFH+FKDG+
Sbjct: 554 ERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFIKLVSKIVDRRFVVRDASRFHYFKDGV 613

Query: 697 CSCGDYW 703
           CSC DYW
Sbjct: 614 CSCKDYW 620



 Score = 77.0 bits (188), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 2/158 (1%)

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F   S   +  WN  +   A      E++ LY  M  SG   D F+F  I++ C  L+  
Sbjct: 7   FVRNSAVASTSWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLP 66

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV--ISWNALIA 406
              +Q H  ++R G   +    +AL+  Y K G +EDAR VF++    +   + +NALI+
Sbjct: 67  VSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALIS 126

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           GY  + +  +A  +F +M   G+  + VT L ++  C+
Sbjct: 127 GYTANSKVSDAAFMFRRMKETGVSVDSVTILGLVPLCT 164


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 339/577 (58%), Gaps = 9/577 (1%)

Query: 136 LISACIGL-----RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV--RCGMMIDARRLF 188
           ++  CI L      S  ++K++ ++ +  G  P     N+ L+  +      M  A ++F
Sbjct: 33  ILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIF 92

Query: 189 DEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC-GSRTFATMIRASAGLELI 247
           +++   N+ + N +I G  +S +   A  LF  +    S    + TF  + +A A L  +
Sbjct: 93  NQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDV 152

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           S+G+ +HS  ++ GF    FV  +L+ MYS  GS+  A  VF+ MS +  V WN++I G+
Sbjct: 153 SLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGF 212

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           AL+G   EAL LY EM   GV+ D FT   ++  C  L +L   ++ H  +V+ G   + 
Sbjct: 213 ALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQ 272

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
            A++AL+D YSK G   DA+ VFD+M  ++V+SW +LI G   +G G EA++LF ++   
Sbjct: 273 HASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQ 332

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G++P+ +TF+ VL ACS  G+ + G+  F+ M  ++ I PR  H+ CM++LL R G + +
Sbjct: 333 GLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGD 392

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A+  IR  P      +W  LL AC ++G+LELG+ A  ++  +E     ++V+L N+Y S
Sbjct: 393 AYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYAS 452

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
             +  +   V + +  KG++  P  S +E+K + + F+ GD+SH Q++E Y  + ++   
Sbjct: 453 ERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQL 512

Query: 608 ISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
           +   GYVP    +L D++E+E+   LS+H+EK+A+AF L+NT   TP++I+++ R+C DC
Sbjct: 513 LKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADC 572

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           H AIKLI+ V  REI+VRD SRFHHFKDG CSC DYW
Sbjct: 573 HLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 186/421 (44%), Gaps = 42/421 (9%)

Query: 17  QNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECCLMEQGLKPR-PKPNKI 75
           QN      SF   K +   SL+  C  S  K K   +F       +  G+ P+ P  NK 
Sbjct: 23  QNFLDCHLSFILRKCI---SLVQLCGSSQSKLKQIHAFS------IRHGVPPQNPDFNKH 73

Query: 76  YTEELKESSLPDT-------QMKKPSAGI-CSQIEKLVLNKRYREALELFEILEFEGGFD 127
               L   S P +       Q++ P+     + I     ++    A+ELF  +       
Sbjct: 74  LIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSIL 133

Query: 128 VGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL 187
             + T+  L  A   L  +   + + S ++  GF+   +++N ++ M+   G +  A ++
Sbjct: 134 PDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQV 193

Query: 188 FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI 247
           F+ M  R+ V+ N +I G   +G   EA  L+ ++  E  +    T  +++ A   L  +
Sbjct: 194 FEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGAL 253

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           ++G+++H   +K+G   N   S AL+D+YSKCG+  DAQ VFDEM E++ V W ++I G 
Sbjct: 254 ALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGL 313

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL-- 365
           A++G   EAL L+ E+   G+K    TF  ++  C+           H G++  GF    
Sbjct: 314 AVNGLGNEALKLFGELERQGLKPSEITFVGVLYACS-----------HCGMLDEGFNYFR 362

Query: 366 ----------DIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRG 414
                      I  +  +VD   + G++ DA      M +  N + W  L+     HG  
Sbjct: 363 RMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHL 422

Query: 415 E 415
           E
Sbjct: 423 E 423


>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/610 (36%), Positives = 350/610 (57%), Gaps = 13/610 (2%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I+  ++   +  A++LF+ +         S ++  +I   +    + E +R F+ M  
Sbjct: 126 SVIKASIICNDFVTAVKLFDEMP-----QRNSISWTTIIHGFLSTGRVNEAERFFNAMPY 180

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
              + D+   N ++  +   G + DA RLF +MP R+++S   II G+  +G   +A   
Sbjct: 181 V--DKDVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFF 238

Query: 219 FLDLWEEFSDCG--SRTFATMIRASAGLELISVGKQLHSCALKMGF--GDNVFVSCALID 274
           F ++   FS  G  S T    + A+A +     G Q+H C  K GF  G + FVS +L+ 
Sbjct: 239 FKNM-VGFSGVGISSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVSASLVT 297

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
            Y+ C  + DA  VF E   K  V W  ++ G  L+    EAL+++ EM    V  +  +
Sbjct: 298 FYASCKRMGDACKVFGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPNESS 357

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           F+  +  C  L  LE  +  HA  ++ G    +   ++LV  YSK G I DA  VF  + 
Sbjct: 358 FTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVFKGIC 417

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
            KNV+SWN++I G   HG G  A+ LF++ML  G+  + +T   +LSACSRSG+ ++   
Sbjct: 418 EKNVVSWNSVIVGCAQHGCGTWALVLFKEMLREGVESDEITLTGLLSACSRSGMLQKARC 477

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
            F   +R   +K    HYACM+++LGR G ++EA AL    P +    +W  LL+ACRV+
Sbjct: 478 FFGYFARKRSMKLTVEHYACMVDVLGRCGEVEEAEALATSMPVEANSMVWLVLLSACRVH 537

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
            +L++ + AA++++ MEP+  + YV+L N+Y SS +  E A +   ++  G+   P  SW
Sbjct: 538 SSLDVAERAAKRIFEMEPDCSAAYVLLSNLYASSRRWLEVARIRMKMKHNGIVKQPGSSW 597

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLS 633
           I +K   H FLS D+SH  T+EIY K+  + +++ + GY+P+++  L DV+ EQ + +LS
Sbjct: 598 ITLKGMRHEFLSADRSHPLTEEIYEKLVWLGVKLRELGYIPDQQFALHDVEIEQNEEMLS 657

Query: 634 YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
           YHSE+LA+AFGL++T + + + I+++ R+C DCH AI L+A +  REIVVRD+SRFHHFK
Sbjct: 658 YHSERLAIAFGLLSTVEGSTITIMKNLRVCGDCHTAITLMAKIVNREIVVRDSSRFHHFK 717

Query: 694 DGMCSCGDYW 703
           +G+CSCGDYW
Sbjct: 718 NGICSCGDYW 727



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/194 (20%), Positives = 87/194 (44%), Gaps = 32/194 (16%)

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR- 340
           ++ A+ VF+++       +  ++  YA +    EA++L+ ++  +    D  +++ +I+ 
Sbjct: 73  LDSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAINLFNQIPSN--TKDTISWNSVIKA 130

Query: 341 --ICTRLAS-------LEHAKQAHAGLVRHGF-------------------GLDIVANSA 372
             IC    +       +          + HGF                     D+   +A
Sbjct: 131 SIICNDFVTAVKLFDEMPQRNSISWTTIIHGFLSTGRVNEAERFFNAMPYVDKDVATWNA 190

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML-LNGMRP 431
           +V+ Y   GR+ DA  +F +M  ++VISW ++I G   +G+  +A+  F+ M+  +G+  
Sbjct: 191 MVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGVGI 250

Query: 432 NHVTFLAVLSACSR 445
           +  T +  LSA ++
Sbjct: 251 SSTTLVCGLSAAAK 264


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 223/630 (35%), Positives = 352/630 (55%), Gaps = 41/630 (6%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           ++A++LF  +  +      S T   +ISAC  L  +   ++V++++ ++G E +  M + 
Sbjct: 217 KDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSA 276

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ M+++C  +  A+RLFDE    NL  CN + +  +  G   EA    L ++    D G
Sbjct: 277 LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREA----LGVFNLMMDSG 332

Query: 231 SR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            R    +  + I + + L  I  GK  H   L+ GF     +  ALIDMY KC   + A 
Sbjct: 333 VRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAF 392

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHG-------------------------------YSEE 315
            +FD MS KT V WN+I+AGY  +G                                 EE
Sbjct: 393 RIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEE 452

Query: 316 ALDLYYEMRDS-GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           A++++  M+   GV  D  T   I   C  L +L+ AK  +  + ++G  LD+   + LV
Sbjct: 453 AIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLV 512

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D +S+ G  E A  +F+ +  ++V +W A I      G  E A+ELF+ M+  G++P+ V
Sbjct: 513 DMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGV 572

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
            F+  L+ACS  GL ++G EIF SM + H + P  +HY CM++LLGR GLL+EA  LI  
Sbjct: 573 AFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIED 632

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            P +    +W +LL ACRV GN+E+  +AAEK+  + PE+  +YV+L N+Y S+G+  + 
Sbjct: 633 MPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDM 692

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
           A+V  +++ KGLR  P  S I+++ + H F SGD+SH +   I   +D +    S  G+V
Sbjct: 693 AKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHV 752

Query: 615 PEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLI 673
           P+   +L DVDE+E+  +LS HSEKLA+A+GLI+++  T ++IV++ R+C DCH+  K  
Sbjct: 753 PDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFA 812

Query: 674 AMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + V  REI++RD +RFH+ + G CSCGD+W
Sbjct: 813 SKVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/379 (30%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA+ LF +     G      T+   +SAC   R+     ++   ++  G+  DL+++N +
Sbjct: 117 EAILLF-LRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSL 175

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW-EEFSDCG 230
           +  +  CG +  AR++FDEM ERN+VS   +I G        +A  LF  +  +E     
Sbjct: 176 VHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPN 235

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           S T   +I A A LE +  G+++++     G   N  +  AL+DMY KC +I+ A+ +FD
Sbjct: 236 SVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFD 295

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           E         N + + Y   G + EAL ++  M DSGV+ D  +    I  C++L ++  
Sbjct: 296 EYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILW 355

Query: 351 AKQAHAGLVRHGF-GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
            K  H  ++R+GF   D + N AL+D Y K  R + A  +FD+M  K V++WN+++AGY 
Sbjct: 356 GKSCHGYVLRNGFESWDNICN-ALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYV 414

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            +G  + A E FE M       N V++  ++S   +  L E   E+F SM     +    
Sbjct: 415 ENGEVDAAWETFETM----PEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADG 470

Query: 470 MHYACMIELLGREGLLDEA 488
           +    +    G  G LD A
Sbjct: 471 VTMMSIASACGHLGALDLA 489



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 137/247 (55%), Gaps = 1/247 (0%)

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK 259
           N +I G   SG   EA LLFL +          TF   + A A       G Q+H   +K
Sbjct: 103 NSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVK 162

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDL 319
           MG+  ++FV  +L+  Y++CG ++ A+ VFDEMSE+  V W ++I GYA   ++++A+DL
Sbjct: 163 MGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDL 222

Query: 320 YYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378
           ++ M RD  V  +  T   +I  C +L  LE  ++ +A +   G  ++ +  SALVD Y 
Sbjct: 223 FFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYM 282

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
           K   I+ A+ +FD+    N+   NA+ + Y   G   EA+ +F  M+ +G+RP+ ++ L+
Sbjct: 283 KCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLS 342

Query: 439 VLSACSR 445
            +S+CS+
Sbjct: 343 AISSCSQ 349



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 130/243 (53%), Gaps = 6/243 (2%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED---AQGVFDEM-SEKTTVGWNTIIAG 306
           K  H    K G  ++V     L+    + G+ E    A+ VF+   S  T   +N++I G
Sbjct: 49  KMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRG 108

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           YA  G   EA+ L+  M +SG+  D +TF   +  C +  +  +  Q H  +V+ G+  D
Sbjct: 109 YASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKD 168

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +   ++LV FY++ G ++ AR VFD+M  +NV+SW ++I GY      ++AV+LF +M+ 
Sbjct: 169 LFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVR 228

Query: 427 N-GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
           +  + PN VT + V+SAC++    E G +++ +  R+  I+   +  + ++++  +   +
Sbjct: 229 DEEVTPNSVTMVCVISACAKLEDLETGEKVY-AFIRNSGIEVNDLMVSALVDMYMKCNAI 287

Query: 486 DEA 488
           D A
Sbjct: 288 DVA 290



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 105/219 (47%), Gaps = 4/219 (1%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I  LV    + EA+E+F  ++ + G +    T  ++ SAC  L ++   K ++ Y+   G
Sbjct: 441 ISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNG 500

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            + D+ +   ++ M  RCG    A  +F+ +  R++ +    I  M  +G+   A  LF 
Sbjct: 501 IQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFD 560

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM-GFG-DNVFVSCALIDMYSK 278
           D+ E+        F   + A +   L+  GK++    LK+ G   ++V   C ++D+  +
Sbjct: 561 DMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGC-MVDLLGR 619

Query: 279 CGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEA 316
            G +E+A  + ++M  E   V WN+++A   + G  E A
Sbjct: 620 AGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMA 658


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/565 (37%), Positives = 320/565 (56%), Gaps = 36/565 (6%)

Query: 175 HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF 234
           +VR G +  AR + D M E+  ++ N +I+G +  G + +A  LF  +          T+
Sbjct: 233 YVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTY 292

Query: 235 ATMIRASAGLELISVGKQLHSCALKMGFGDN----VFVSCALIDMYSKCGSIEDAQGVFD 290
            ++I A A      +GKQ+H+  LK     +    + V   LI +Y K G ++ A+ +F 
Sbjct: 293 TSVISACADGGFFLLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFY 352

Query: 291 EMSEKTTVGWNTIIAGY-------------------------------ALHGYSEEALDL 319
           EM  K  + WNT+++GY                               A +G+ E+AL L
Sbjct: 353 EMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKL 412

Query: 320 YYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379
           + +M+  G + + + F+  I  C+ L +LE+ +Q HA +V  G    +   +A++  Y++
Sbjct: 413 FNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYAR 472

Query: 380 WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
            G +E AR +F  M   + +SWN++IA  G HG G +A+EL+EQML  G+ P+  TFL V
Sbjct: 473 CGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTV 532

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499
           LSACS +GL E G   F SM  ++ I P   HYA MI+L  R G   +A  +I   PF+ 
Sbjct: 533 LSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEA 592

Query: 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
              +W ALL  CR +GN++LG  AAEKL+ + P+    YV+L N+Y S G+  + A   +
Sbjct: 593 RAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRK 652

Query: 560 TLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKT 619
            +R +G++  PACSW EV+ + HVFL  D  H +   IY  ++++ LE+ K GY+P+ K 
Sbjct: 653 LMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKY 712

Query: 620 LLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTG 678
           +L D++ E ++  LS HSEKLAVAFGL+       +++ ++ RIC DCHNAIK ++ V G
Sbjct: 713 VLHDMESEHKEYALSTHSEKLAVAFGLMKLPQGATVRVFKNLRICGDCHNAIKFMSKVVG 772

Query: 679 REIVVRDASRFHHFKDGMCSCGDYW 703
           REIVVRD  RFHHFK+G CSC +YW
Sbjct: 773 REIVVRDGKRFHHFKNGECSCRNYW 797



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 130/519 (25%), Positives = 217/519 (41%), Gaps = 125/519 (24%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMP--ERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           +PD+  R  ++  +   G +  AR +F+E P   R+ V  N +I G     D   A  LF
Sbjct: 76  QPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELF 135

Query: 220 LDL-WEEFSDCGSRTFATMIRASAGLELISVGK----QLHSCALKMGFGD---------N 265
             + W  F      TFA+++ AS    LI   +    Q+H   +K G            +
Sbjct: 136 RAMRWANFQP-DDFTFASVLSAST---LIFYDERQCGQMHGTVVKFGIEIFPAVLNALLS 191

Query: 266 VFVSCA-------------------------------LIDMYSKCGSIEDAQGVFDEMSE 294
           V+V CA                               LI  Y + G +  A+ + D M+E
Sbjct: 192 VYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMTE 251

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
           +  + WN +I+GY  HG  E+AL L+ +MR  GV++D  T++ +I  C         KQ 
Sbjct: 252 QPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGKQV 311

Query: 355 HAGLVRHGFGLD----IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
           HA ++++    D    +   + L+  Y K+G+++ AR +F +M  K++I+WN L++GY N
Sbjct: 312 HAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVN 371

Query: 411 HGR-------------------------------GEEAVELFEQMLLNGMRPNHVTFLAV 439
            GR                               GE+A++LF QM L+G  PN   F   
Sbjct: 372 AGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGA 431

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF-- 497
           ++ACS  G  E G ++   +         ++  A MI +  R G+++ A  +    PF  
Sbjct: 432 ITACSVLGALENGRQLHAQIVHLGHDSTLSVGNA-MITMYARCGIVEAARTMFLTMPFVD 490

Query: 498 -KTTKNMWAAL-------------------------------LTACRVNGNLELGKFAAE 525
             +  +M AAL                               L+AC   G +E G     
Sbjct: 491 PVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFN 550

Query: 526 KL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            +   YG+ P +  +Y  +++++  +GK  +A  VI ++
Sbjct: 551 SMLENYGIAPGE-DHYARMIDLFCRAGKFSDAKNVIDSM 588



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 178/392 (45%), Gaps = 40/392 (10%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           DT  ++P     + I   + +  + +AL LF  +   G   V  STY ++ISAC      
Sbjct: 247 DTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLG-VQVDESTYTSVISACADGGFF 305

Query: 147 REVKRVFSYMLSTGFEPD-------------LYMR----------------------NRV 171
              K+V +Y+L     PD             LY +                      N +
Sbjct: 306 LLGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTL 365

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           L  +V  G M +A+  F +MPE+NL++  ++I+G+  +G   +A  LF  +  +  +   
Sbjct: 366 LSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPND 425

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
             FA  I A + L  +  G+QLH+  + +G    + V  A+I MY++CG +E A+ +F  
Sbjct: 426 YAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLT 485

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M     V WN++IA    HG+  +A++LY +M   G+  D  TF  ++  C+    +E  
Sbjct: 486 MPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEG 545

Query: 352 KQA-HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYG 409
            +  ++ L  +G        + ++D + + G+  DA++V D M        W AL+AG  
Sbjct: 546 NRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCR 605

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            HG  +  +E  E++    + P H     +LS
Sbjct: 606 THGNMDLGIEAAEKLF--KLIPQHDGTYVLLS 635



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 108/243 (44%), Gaps = 25/243 (10%)

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDK--MLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
           D++A + L+  YS  G ++ AR +F++  +  ++ + +NA+I GY +   G  A+ELF  
Sbjct: 78  DVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRA 137

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSER------------GWEIFQSMSRDHKIKPRAMH 471
           M     +P+  TF +VLSA +     ER            G EIF ++         +++
Sbjct: 138 MRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLN----ALLSVY 193

Query: 472 YAC-MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
             C    L+    L+  A  L    P K  + +W  L+T    NG+L     A E L  M
Sbjct: 194 VKCASSPLVSSSSLMASARKLFDEMP-KRNEFIWTTLITGYVRNGDL---TGAREILDTM 249

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA--CSWIEVKKQPHVFLSGD 588
             +    +  +++ Y   G  ++A  + R +R  G+++  +   S I        FL G 
Sbjct: 250 TEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFLLGK 309

Query: 589 QSH 591
           Q H
Sbjct: 310 QVH 312


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 234/684 (34%), Positives = 364/684 (53%), Gaps = 81/684 (11%)

Query: 82  ESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACI 141
           E+ LP   +   +A + +  E     ++ REAL LFE +         + +++ LIS  I
Sbjct: 47  ETPLPHRTVSSWNAMVAAYFEA----RQPREALLLFEKMP-----QRNTVSWNGLISGHI 97

Query: 142 GLRSIREVKRVFSYMLSTGFEPDL-----------YMRN------RVLLMH--------- 175
               + E +RVF  M      PD            Y+RN        L  H         
Sbjct: 98  KNGMLSEARRVFDTM------PDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSW 151

Query: 176 -------VRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
                  ++ G + DAR+LFD MPE+++V+   +I G  + G   EA  LF    +E   
Sbjct: 152 TVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALF----DEMPK 207

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSC----------ALKMGFGDN------------- 265
               T+  M+   A    + V ++L             A+ +G+  +             
Sbjct: 208 RNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAM 267

Query: 266 ----VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
               V V   +I  +   G ++ A+ VF  M E+    W+ +I  Y   GY  EAL L+ 
Sbjct: 268 PVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFR 327

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
            M+  G+ ++  +   ++ +C  LASL+H KQ HA LVR  F  D+   S L+  Y K G
Sbjct: 328 RMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCG 387

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            +  A+ VF++   K+V+ WN++I GY  HG GEEA+ +F  M  +G+ P+ VTF+ VLS
Sbjct: 388 NLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLS 447

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           ACS SG  + G E+F++M   ++++P   HYAC+++LLGR   ++EA  L+   P +   
Sbjct: 448 ACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDA 507

Query: 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            +W ALL ACR +  L+L + A EKL  +EP+    YV+L N+Y   G+ ++   +   +
Sbjct: 508 IVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKI 567

Query: 562 RRKGLRMLPACSWIEVKKQPHVFLSGD-QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTL 620
           + + +  LP CSWIEV+K+ H+F  GD + H +   I + ++++   + + GY P+   +
Sbjct: 568 KARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSFV 627

Query: 621 LPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGR 679
           L DVDE+E+   L YHSEKLAVA+GL+   +  P++++++ R+C DCH+AIKLIA VTGR
Sbjct: 628 LHDVDEEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGR 687

Query: 680 EIVVRDASRFHHFKDGMCSCGDYW 703
           EI++RDA+RFHHFKDG CSC DYW
Sbjct: 688 EIILRDANRFHHFKDGHCSCKDYW 711



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 153/338 (45%), Gaps = 63/338 (18%)

Query: 175 HVRCGMMIDARRLFDE--MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
           + R G +  AR++FDE  +P R + S N ++A   ++    EA LLF  + +        
Sbjct: 32  YARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQR------- 84

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
                                           N      LI  + K G + +A+ VFD M
Sbjct: 85  --------------------------------NTVSWNGLISGHIKNGMLSEARRVFDTM 112

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            ++  V W +++ GY  +G   EA  L++ M    V     ++++++    +   ++ A+
Sbjct: 113 PDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNV----VSWTVMLGGLLQEGRVDDAR 168

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           +    +       D+VA + ++  Y + GR+++AR +FD+M  +NV++W A+++GY  +G
Sbjct: 169 KLFDMMPEK----DVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNG 224

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
           + + A +LFE M       N V++ A+L   + SG       +F +M     +KP  +  
Sbjct: 225 KVDVARKLFEVM----PERNEVSWTAMLLGYTHSGRMREASSLFDAMP----VKPVVV-- 274

Query: 473 AC--MIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
            C  MI   G  G +D+A  + +G   +     W+A++
Sbjct: 275 -CNEMIMGFGLNGEVDKARRVFKGMK-ERDNGTWSAMI 310



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 150/328 (45%), Gaps = 52/328 (15%)

Query: 273 IDMYSKCGSIEDAQGVFDE--MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR------ 324
           I  Y++ G ++ A+ VFDE  +  +T   WN ++A Y       EAL L+ +M       
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVS 88

Query: 325 ---------------------DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
                                D+    +  +++ ++R   R   +  A++    L  H  
Sbjct: 89  WNGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAER----LFWHMP 144

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             ++V+ + ++    + GR++DAR +FD M  K+V++   +I GY   GR +EA  LF++
Sbjct: 145 HKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDE 204

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG--R 481
           M     + N VT+ A++S  +R+G  +   ++F+ M   +++   AM       LLG   
Sbjct: 205 M----PKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAM-------LLGYTH 253

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY-GMEPEKLSNYVV 540
            G + EA +L    P K    +   ++    +NG ++     A +++ GM+      +  
Sbjct: 254 SGRMREASSLFDAMPVKPVV-VCNEMIMGFGLNGEVD----KARRVFKGMKERDNGTWSA 308

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
           ++ +Y   G   EA  + R ++R+GL +
Sbjct: 309 MIKVYERKGYELEALGLFRRMQREGLAL 336



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 97/204 (47%), Gaps = 21/204 (10%)

Query: 368 VANSALVDFYSKWGRIEDARHVFDK--MLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
            ++S  +  Y++ G+++ AR VFD+  +  + V SWNA++A Y    +  EA+ LFE+M 
Sbjct: 23  TSSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKM- 81

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
               + N V++  ++S   ++G+      +F +M   + +      +  M+    R G +
Sbjct: 82  ---PQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVS-----WTSMVRGYVRNGDV 133

Query: 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI- 544
            EA  L    P K   + W  +L      G ++     A KL+ M PEK  + V + N+ 
Sbjct: 134 AEAERLFWHMPHKNVVS-WTVMLGGLLQEGRVD----DARKLFDMMPEK--DVVAVTNMI 186

Query: 545 --YNSSGKLKEAAEVIRTLRRKGL 566
             Y   G+L EA  +   + ++ +
Sbjct: 187 GGYCEEGRLDEARALFDEMPKRNV 210


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/575 (34%), Positives = 343/575 (59%), Gaps = 3/575 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G  + + T  +++  C     +     +  ++L  G + D+++ N ++ M+ + G + DA
Sbjct: 217 GVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDA 276

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           + +FD+M  R+LVS N IIA    + D   A   F  +          T  ++    + L
Sbjct: 277 QMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQL 336

Query: 245 ELISVGKQLHSCALKMGFGD-NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
               + + +    ++  + D +V +  AL++MY+K G +  A  VFD++  K T+ WNT+
Sbjct: 337 SDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTL 396

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKM-DHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           + GY  +G + EA+D Y  M +    + +  T+  II   + + +L+   + HA L+++ 
Sbjct: 397 VTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNS 456

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
             LD+   + L+D Y K GR+EDA  +F ++     + WNA+IA  G HGRGEEA++LF+
Sbjct: 457 LYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFK 516

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
            ML   ++ +H+TF+++LSACS SGL + G + F  M +++ IKP   HY CM++LLGR 
Sbjct: 517 DMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRA 576

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
           G L++A+ L+R  P +   ++W ALL+AC++ GN ELG  A+++L  ++ E +  YV+L 
Sbjct: 577 GYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLS 636

Query: 543 NIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVD 602
           NIY ++ K +   +V    R +GLR  P  S + V  +  VF +G+Q+H +  EIY+++ 
Sbjct: 637 NIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYKELK 696

Query: 603 RMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHR 661
            +  ++   GYVP+   +  D++E E +++L+ HSE+LA+AFG+I+T   +P++I ++ R
Sbjct: 697 VLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFKNLR 756

Query: 662 ICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           +C DCHNA K I+ ++ REIVVRD++RFHHFKDG+
Sbjct: 757 VCGDCHNATKYISRISEREIVVRDSNRFHHFKDGI 791



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 122/453 (26%), Positives = 230/453 (50%), Gaps = 31/453 (6%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           + ++AL ++C+   ++   K++ + +L  G   ++ +  +++ ++V  G +  +R  FD 
Sbjct: 23  ADFNALFNSCV---NVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDY 79

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS-------RTFATMIRASAG 243
           + ++N+ S N II+  +  G Y EA      L   FS CG         TF  +++A   
Sbjct: 80  IHKKNIFSWNSIISAYVRFGKYHEAMNCVNQL---FSMCGGGHLRPDFYTFPPILKACVS 136

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L     GK++H C  KMGF D+VFV+ +L+ +YS+ G ++ A  VF +M  K    WN +
Sbjct: 137 L---VDGKKVHCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAM 193

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I+G+  +G +  AL +   M+  GVKMD  T + I+ +C +   + +    H  +++HG 
Sbjct: 194 ISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGL 253

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             D+  ++AL++ YSK+GR++DA+ VFD+M  ++++SWN++IA Y  +     A+  F+ 
Sbjct: 254 DSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKG 313

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           M L G+RP+ +T +++ S  S+         I   + R   +    +    ++ +  + G
Sbjct: 314 MQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLG 373

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL--YGMEPE------KL 535
            ++ A  +    P K T + W  L+T    NG       A+E +  Y M  E        
Sbjct: 374 YMNCAHTVFDQLPRKDTIS-WNTLVTGYTQNG------LASEAIDAYNMMEECRDTIPNQ 426

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
             +V ++  Y+  G L++  ++   L +  L +
Sbjct: 427 GTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYL 459


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/601 (35%), Positives = 338/601 (56%), Gaps = 4/601 (0%)

Query: 83  SSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIG 142
           SS PD    K      S I +L   KR  +AL  F  +   G +     T+ A++SAC  
Sbjct: 86  SSAPDDS--KNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYP-NHYTFSAVLSACTD 142

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
             +    +++ S +   GF  ++++ + ++ M+ +C  M+ A ++F+EMP RNLVS N +
Sbjct: 143 TTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTM 202

Query: 203 IAGMIDSGDYLEAFLLFLDLW-EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           I G + +  Y +A   F  L  E  +     +F+++  A A    +  GKQ+H  ALK+G
Sbjct: 203 IVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLG 262

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
             + V+++ +L DMY KCG   D   +F     +  V WN +I  Y  +   E+A + ++
Sbjct: 263 VWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFW 322

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
            MR  G   D  ++S ++  C  LA+L      H  ++R GF  ++   S+L+  Y+K G
Sbjct: 323 MMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCG 382

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            + DA  +F++   +NV+ W A+IA    HG     VELFEQML  G++P+++TF++VLS
Sbjct: 383 SLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLS 442

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           ACS +G  E G+  F SM + H I P   HYAC+++LL R G LD A   I   P K   
Sbjct: 443 ACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDA 502

Query: 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           ++W ALL+ACR + NL +GK  A KL+ +EP+   NYV+L NI   +G L EA EV R +
Sbjct: 503 SVWGALLSACRNHSNLIMGKEVALKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKM 562

Query: 562 RRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLL 621
              G+R  P CSWI++K   +VF   D+SH +TKEIY  ++++   + K GYV E +  +
Sbjct: 563 ESIGVRKEPGCSWIDIKNSTYVFTVHDKSHEKTKEIYEMLEKLKELVKKKGYVAETEFAI 622

Query: 622 PDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREI 681
              +E +++ L YHSEK+A+AFGL++     P++I ++ R C DCH  +K  + +  REI
Sbjct: 623 NTAEEYKEQSLWYHSEKIALAFGLLSLPAGAPIRIKKNLRTCGDCHTVMKFASEIFAREI 682

Query: 682 V 682
           +
Sbjct: 683 I 683



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 113/209 (54%), Gaps = 3/209 (1%)

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE--KTTVGWNTIIAGY 307
             Q+HS  +        F+   L+++Y+KCGS++    +F    +  K  V W ++I   
Sbjct: 46  ATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTSLITQL 105

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
                  +AL  +  MR SGV  +H+TFS ++  CT   +  H +Q H+ + +HGF  ++
Sbjct: 106 TRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEV 165

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              SALVD Y+K   +  A  VF++M  +N++SWN +I G+  +   ++A+  F+ +LL 
Sbjct: 166 FVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLE 225

Query: 428 GMRP-NHVTFLAVLSACSRSGLSERGWEI 455
            +   + V+F +V SAC+ +G  E G ++
Sbjct: 226 NLTALDEVSFSSVFSACANAGNLEFGKQV 254


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/614 (36%), Positives = 349/614 (56%), Gaps = 22/614 (3%)

Query: 112 EALELFE-ILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
            AL LF  +L+ E        T+ +L+SA  GL ++R  + + +++     E D  + N 
Sbjct: 308 NALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNS 367

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF----LDLWEEF 226
           ++  + +C  +  AR +F+ +  R+++S N ++AG   +      F +F    L   E  
Sbjct: 368 LITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPD 427

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALK--MGFGDNVFVSCALIDMYSKCGSIED 284
           S   +  F    R S+GL     GK++H   L+     G ++ VS A++ MY+K   I D
Sbjct: 428 SHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIAD 487

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+ +F  M  + +  WN ++ GY+ +   E+ L ++ ++   G  +DH + S+++  C R
Sbjct: 488 AEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGR 547

Query: 345 LASLEHAKQAHAGLVRHGFGLD-------IVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           L SL+  KQ HA + +   G D       +  N+AL+  YSK G I+DA  VF KM  K+
Sbjct: 548 LVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKD 607

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           V SW A+I G  +HG   EA++LFE+M  +G++PN VTFLA+L AC+  GL + G   F 
Sbjct: 608 VFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFD 667

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEA-----FALIRGAPF-KTTKNMWAALLTAC 511
           SM  D+ + P   HYACMI+L GR G  D A     F +    P+     N+W  LL AC
Sbjct: 668 SMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGAC 727

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
             +  L+LG  AA K+  +EPE  + Y++L N+Y SSG  ++A +V + +R KGLR    
Sbjct: 728 HASKQLDLGVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVG 787

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR- 630
           CSWI+   + HVF++GD  H Q KEIY K+ ++     + GYVP  + +L DVDE E+  
Sbjct: 788 CSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYVPMTELVLHDVDETEKEA 847

Query: 631 VLSYHSEKLAVAFGLINTSDWTP-LQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRF 689
           +L  HSEKLAV+FGL+N       ++++++ R+C DCH+ +K  +++  REI++RD+ RF
Sbjct: 848 ILGCHSEKLAVSFGLLNCGVGNGVIRVMKNLRVCEDCHSWMKFASLLEKREILLRDSQRF 907

Query: 690 HHFKDGMCSCGDYW 703
           H F+DG CSCGDYW
Sbjct: 908 HLFRDGSCSCGDYW 921



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/271 (35%), Positives = 151/271 (55%), Gaps = 8/271 (2%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A++LFD  P R+++S + +IA     G++ +AF LF  +  E       + A++++ S  
Sbjct: 74  AQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCS 133

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS--EKTTVGWN 301
              I + +QLH  +++ GFG +  +  A I MYS+CG +EDAQ VFDE S      + WN
Sbjct: 134 TGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWN 193

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSG-VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           +IIA Y  HG   E L L+ +M   G V     T++ ++  C      ++    H  +++
Sbjct: 194 SIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIK 253

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
            G     + NS LV FY K G ++ A  +F+++  K+V+SWNA+IA     G GE A+ L
Sbjct: 254 AGLEATNLWNS-LVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGL 312

Query: 421 FEQMLL--NGMRPNHVTFLAVLSACSRSGLS 449
           F +ML     ++PN VTFL++LSA   SGLS
Sbjct: 313 FRRMLKVEPPVQPNRVTFLSLLSAV--SGLS 341



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 135/515 (26%), Positives = 248/515 (48%), Gaps = 70/515 (13%)

Query: 110 YREALELFEILEFEG----GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           + +A  LF+ +  EG    GF + S    +  +  IGL      +++  + + TGF  D 
Sbjct: 102 FAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGL-----CRQLHGWSIRTGFGLDS 156

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDE--MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
            +R   + M+ RCG++ DA+R+FDE  +   +++  N IIA  I  G ++E   LF  + 
Sbjct: 157 GIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVEVLRLFCKMV 216

Query: 224 EEFSDCGSR-TFATMIRASAGLELISVGKQLHSCALKMGF-GDNVFVSCALIDMYSKCGS 281
                  +  T+A+++ A         G  +H   +K G    N++ S  L+  Y KCG+
Sbjct: 217 SVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATNLWNS--LVTFYGKCGN 274

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR--DSGVKMDHFTFSMII 339
           ++ A  +F+ +S K  V WN +IA     G  E AL L+  M   +  V+ +  TF  ++
Sbjct: 275 LQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLL 334

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
              + L++L   ++ HA + R    +D    ++L+ FYSK   +  AR +F+++L +++I
Sbjct: 335 SAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDII 394

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR--SGLS--ERGWEI 455
           SWN+++AGY  + +     ++F++M+L+G+ P+  +   + +A SR  SGL    RG EI
Sbjct: 395 SWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEI 454

Query: 456 FQSMSRDHKIKPRAMHYA---CMIELLGREGLLDEAFALIRGAPFKTTKNMWAA------ 506
              + R  +I P  +  +    ++++  +   + +A  + +G   + + + W A      
Sbjct: 455 HGYILR--RITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYS-WNAMMDGYS 511

Query: 507 -----------------------------LLTACRVNGNLELGK-FAA--EKLYGME--P 532
                                        LLT+C    +L+LGK F A   KL+  +  P
Sbjct: 512 RNAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCP 571

Query: 533 EK---LSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
            +   LS    L+++Y+  G +K+AA+V   + RK
Sbjct: 572 HQDSLLSINNALISMYSKCGSIKDAAQVFLKMERK 606



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 106/263 (40%), Gaps = 56/263 (21%)

Query: 350 HAKQAHAGLVRHGFGLDIV----ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           H +        HGF    +    A S  +   S+  R++ A+ +FD    ++VISW+ALI
Sbjct: 34  HLRNKQLEFQNHGFSSQFIFRCSACSKFLVSQSEHERLKCAQQLFDNFPNRDVISWSALI 93

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS-ACSRS--GLSER--GWEIFQSMS 460
           A Y   G   +A  LF++M+  G++PN  +  ++L  +CS    GL  +  GW I     
Sbjct: 94  AAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLHGWSIRTGFG 153

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEA-------------------------------- 488
            D  I+      A  I +  R G+L++A                                
Sbjct: 154 LDSGIR------AAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWVE 207

Query: 489 -----FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY--GMEPEKLSNYVVL 541
                  ++       T+  +A+++ AC  +G  + G     ++   G+E   L N +V 
Sbjct: 208 VLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATNLWNSLV- 266

Query: 542 LNIYNSSGKLKEAAEVIRTLRRK 564
              Y   G L+ A+++   + RK
Sbjct: 267 -TFYGKCGNLQHASQLFERISRK 288


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/547 (36%), Positives = 326/547 (59%), Gaps = 11/547 (2%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D+   N ++  +   G + D  RLF EMP RN++S   +I G+   G   EA    L L+
Sbjct: 134 DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEA----LGLF 189

Query: 224 EEFSDCG------SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
            +   CG      S T+  +I A A    +  G Q+H+   K+G+  + ++S ALI  Y+
Sbjct: 190 RQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYA 249

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
            C  +ED+  VF        V W  ++ GY L+   E+AL ++ EM   GV  +  +F+ 
Sbjct: 250 NCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTS 309

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
            +  C  L +L+  ++ H   V+ G   D+   ++L+  Y + G + D   +F ++  KN
Sbjct: 310 ALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKN 369

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           ++SWN++I G   HG G  A+  F QM+ + + P+ +TF  +LSACS SG+S++G  +F+
Sbjct: 370 IVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFK 429

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
             S +   + +  HYACM+++LGR G L+EA  LIR  P K    +W  LL+AC ++  L
Sbjct: 430 YFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKL 489

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
           E+ + AA+ +  +EP   S YV+L N+Y S+ +  + + + R ++++G+   P  SWI +
Sbjct: 490 EVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITI 549

Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHS 636
           K   + FLSGD+SH  +  IY+K++ +  ++ + GYVP+++  L DV DEQ++ +LSYHS
Sbjct: 550 KGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHS 609

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           E+LA+ FGLI+T + + + ++++ R+C DCH+AIKLIA +  R+I+VRD++RFHHF DG 
Sbjct: 610 ERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGR 669

Query: 697 CSCGDYW 703
           CSCGDYW
Sbjct: 670 CSCGDYW 676



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 166/348 (47%), Gaps = 36/348 (10%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDV--GSSTYDALISACIGLRSIREVKRVFSYM 156
           S I  L  + R  EAL LF  +    G +V   SSTY  +I+AC    ++ +  ++ +++
Sbjct: 171 SMIGGLDQHGRSEEALGLFRQM-MGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHV 229

Query: 157 LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF 216
              G+  D Y+   ++  +  C  M D+ R+F      N+V    ++ G   +  + +A 
Sbjct: 230 FKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDAL 289

Query: 217 LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276
            +F ++  E       +F + + +  GLE +  G+++H+ A+K+G   +VFV  +LI MY
Sbjct: 290 KVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMY 349

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
            +CG++ D   +F  +S+K  V WN++I G A HG    AL  + +M  S V+ D  TF+
Sbjct: 350 YRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFT 409

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            ++  C+           H+G+ + G          L  ++S+    + A    D   C 
Sbjct: 410 GLLSACS-----------HSGMSQKG--------RCLFKYFSE---NKSAEVKLDHYAC- 446

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
                  ++   G  G+ EEA EL   M    ++ N + +L +LSAC+
Sbjct: 447 -------MVDILGRSGKLEEAEELIRNM---PVKANSMVWLVLLSACT 484



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 107/196 (54%), Gaps = 13/196 (6%)

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           I++A+ VFD++S      +  +I GYA +   + AL L+YEM    VK D  +++ +I+ 
Sbjct: 27  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMP---VK-DVVSWNSMIKG 82

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C   A L  A++    +        +V+ + +++ + ++G+IE A  +F KM  +++ +W
Sbjct: 83  CFDCADLTMARKLFDEMPER----SVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAW 138

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF-QSMS 460
           N++I GY  +GR E+ + LF++M       N +++ +++    + G SE    +F Q M 
Sbjct: 139 NSMIYGYCCNGRVEDGLRLFQEMPCR----NVISWTSMIGGLDQHGRSEEALGLFRQMMG 194

Query: 461 RDHKIKPRAMHYACMI 476
              ++KP +  Y C+I
Sbjct: 195 CGVEVKPTSSTYCCVI 210


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/583 (36%), Positives = 343/583 (58%), Gaps = 15/583 (2%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T++ LI +C    S+     V   ++ +GF+ D ++  +++ M+   G +  A ++FDE 
Sbjct: 80  TFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDET 139

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLEL- 246
            ER +   N +   +   G   E     LDL+ + +  G+     T+  +++A    EL 
Sbjct: 140 RERTIYVWNALFRALAMVGHGKE----LLDLYIQMNWIGTPSDRFTYTYVLKACVVSELS 195

Query: 247 ---ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
              +  GK++H+  L+ G+  N+ V   L+D+Y+K GS+  A  VF  M  K  V W+ +
Sbjct: 196 VCPLRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAM 255

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI--IRICTRLASLEHAKQAHAGLVRH 361
           IA +A +    +AL+L+  M          + +M+  ++ C  LA+LE  K  H  ++R 
Sbjct: 256 IACFAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRR 315

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
                +   +AL+  Y + G +   + VFD M  ++V+SWN+LI+ YG HG G++A+++F
Sbjct: 316 QLDSILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIF 375

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
           E M+  G+ P++++F+ VL ACS +GL E G  +F+SM   ++I P   HYACM++LLGR
Sbjct: 376 ENMIHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGR 435

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
              L EA  LI    F+    +W +LL +CR++ N+EL + A+  L+ +EP    NYV+L
Sbjct: 436 ANRLGEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPRNAGNYVLL 495

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV 601
            +IY  +    EA  V++ L  +GL+ LP CSWIEVK++ + F+S D+ + Q +EI+  +
Sbjct: 496 ADIYAEAKLWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHALL 555

Query: 602 DRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSH 660
            ++  E+   GYVP+   +L D+DE+E +R++  HSEKLAVAFGLINT+    ++I ++ 
Sbjct: 556 VKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTAKGETIRIRKNL 615

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           R+C DCH   K I+    REI+VRD +RFHHF+DG+CSCGDYW
Sbjct: 616 RLCEDCHAVTKFISKFANREILVRDVNRFHHFRDGVCSCGDYW 658



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 174/372 (46%), Gaps = 43/372 (11%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           +TF  +I + A    +S G  +H C +  GF  + F++  LI+MY + GSI+ A  VFDE
Sbjct: 79  QTFEHLIYSCAQKNSLSYGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDE 138

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT----RLAS 347
             E+T   WN +    A+ G+ +E LDLY +M   G   D FT++ +++ C      +  
Sbjct: 139 TRERTIYVWNALFRALAMVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSVCP 198

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           L   K+ HA ++RHG+  +I   + L+D Y+K+G +  A  VF  M  KN +SW+A+IA 
Sbjct: 199 LRKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIAC 258

Query: 408 YGNHGRGEEAVELFEQMLLNGMR--PNHVTFLAVLSACSRSGLSERGWEIFQSMSR---- 461
           +  +    +A+ELF+ M+       PN VT + +L AC+     E+G  I   + R    
Sbjct: 259 FAKNEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLD 318

Query: 462 --------------------------DHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
                                     D+  K   + +  +I + G  G   +A  +    
Sbjct: 319 SILPVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENM 378

Query: 496 PFKTTKNMWAALLT---ACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSG 549
             +     + + +T   AC   G +E GK   E +   Y + P  + +Y  ++++   + 
Sbjct: 379 IHQGVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHP-GMEHYACMVDLLGRAN 437

Query: 550 KLKEAAEVIRTL 561
           +L EA ++I  +
Sbjct: 438 RLGEAIKLIEDM 449



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 113/229 (49%), Gaps = 8/229 (3%)

Query: 107 NKRYREALELFEILEFEGGFDVGSS-TYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           N+   +ALELF+++ FE    V +S T   ++ AC GL ++ + K +  Y+L    +  L
Sbjct: 262 NEMPMKALELFQLMMFEACNSVPNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSIL 321

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            + N ++ M+ RCG ++  +R+FD M +R++VS N +I+     G   +A  +F ++  +
Sbjct: 322 PVLNALITMYGRCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQ 381

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCAL-KMGFGDNVFVSCALIDMYSKCGSIED 284
                  +F T++ A +   L+  GK L    L K      +     ++D+  +   + +
Sbjct: 382 GVSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGE 441

Query: 285 AQGVFDEMS-EKTTVGWNTIIAGYALH---GYSEEALDLYYEM--RDSG 327
           A  + ++M  E     W +++    +H     +E A  + +E+  R++G
Sbjct: 442 AIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTVLFELEPRNAG 490


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/605 (34%), Positives = 350/605 (57%), Gaps = 3/605 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I  L  N  + EA+++F  +   G F   + T  +++ A   L  IR  K V  + +  G
Sbjct: 94  ISGLAKNDCFVEAIDVFREMTM-GNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGG 152

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           FE ++++   ++ M+ + G M  AR+LF+ M ERN+VS N I++G  D G   EA  LF 
Sbjct: 153 FEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFN 212

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +  +       T  ++I AS  +  + VG  +H   ++ G+ ++  +  AL+D+Y    
Sbjct: 213 LMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHN 272

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSMII 339
            ++DA  VF EM  K    W  ++ G++   + + A+  + +M     +K+D      I+
Sbjct: 273 CVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGIL 332

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
             C+   +L+  ++ HA  ++  F  +I   SA++D Y+  G +EDA+  F  M  K+V+
Sbjct: 333 SSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVV 392

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
            WNA+IAG G +G G +A++LF QM  +G+ P+  TF++VL ACS +G+   G +IF  M
Sbjct: 393 CWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHM 452

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
            +     P   HYAC+I++LGR G LD A++ I   PF+   ++++ LL ACR++GN++L
Sbjct: 453 VKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKL 512

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
           G   ++K++ MEP     YV+L N+Y  +G  +       +LR K L+  P  S IE+ +
Sbjct: 513 GHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQ 572

Query: 580 QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEK 638
           + + F++G++ H Q  +I   +  ++L+I K GYVP    LL DV D+ ++ +L +HSEK
Sbjct: 573 EIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEK 632

Query: 639 LAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCS 698
           +A+AFGL+ T   T ++I ++ R C DCH+A K ++ V GR +V++DA+RFH F+DG+CS
Sbjct: 633 MAIAFGLMRTKPGTIIRITKNLRTCNDCHSASKFVSKVFGRVLVIKDANRFHVFQDGVCS 692

Query: 699 CGDYW 703
           C DYW
Sbjct: 693 CRDYW 697



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 113/418 (27%), Positives = 228/418 (54%), Gaps = 6/418 (1%)

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           L+ ++ ++++ + ++++G   + ++ N ++  +V CG++ DA+++F   P +N+VS  ++
Sbjct: 34  LKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTIL 93

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           I+G+  +  ++EA  +F ++        + T ++++ A A L LI + K +H   ++ GF
Sbjct: 94  ISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGF 153

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             NVFV  AL+DMYSK G +  A+ +F+ MSE+  V WN I++GY+ HG+SEEA+DL+  
Sbjct: 154 EGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNL 213

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           MR  G+ +D +T   +I     +  L+     H  ++R G+  D    +AL+D Y     
Sbjct: 214 MRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALMDIYVSHNC 273

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLS 441
           ++DA  VF +M  K+V +W  ++ G+ +    + A++ F +ML +  ++ + +  + +LS
Sbjct: 274 VDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILS 333

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           +CS SG  ++G  +  +++            + +I++    G L++A     G   K   
Sbjct: 334 SCSHSGALQQGRRV-HALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVV 392

Query: 502 NMWAALLTACRVN--GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
             W A++    +N  G   +  F   K  G++P++ S +V +L   + +G + E  ++
Sbjct: 393 -CWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDE-STFVSVLYACSHAGMVYEGLQI 448



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 60/108 (55%)

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
           I  +L  L+  +Q HA ++  G   +   +++L++ Y   G + DA+ +F    CKNV+S
Sbjct: 30  ILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVS 89

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           W  LI+G   +    EA+++F +M +   +PN VT  +VL A +  GL
Sbjct: 90  WTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGL 137


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/594 (34%), Positives = 342/594 (57%), Gaps = 38/594 (6%)

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL--FDEMPERNLVSCNMIIAG 205
           ++K+V ++++  G     Y+  +++ M  +  + + +  L  F ++   N      +I G
Sbjct: 57  QIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRG 116

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG-FGD 264
               G   E+   +  +  +     S TF+ + +A      + +GKQ+H+  + +G F  
Sbjct: 117 YALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSE------------------------------ 294
           +++V  ++ID+Y KCG +  A+ VFDEMSE                              
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP 236

Query: 295 -KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
            K  V W  ++ GYA +G  +EAL+ + +M+D G++ D  T + +I  C +L +++HA  
Sbjct: 237 LKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANW 296

Query: 354 AHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
                 R GFG   ++V  SAL+D YSK G  ++A  VF+ M  +NV S++++I GY  H
Sbjct: 297 IRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMH 356

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           GR   A++LF  ML   +RPN VTF+ +LSACS +GL E+G ++F  M +   + P   H
Sbjct: 357 GRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDH 416

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           YACM++LLGR G L+EA  L++  P +    +W ALL ACR++GN ++ + AA +L+ +E
Sbjct: 417 YACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLE 476

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK-QPHVFLSGDQS 590
           P  + NY++L NIY S+G+ +E +++ + +R KG +  P CSW E K  + H F +GD +
Sbjct: 477 PNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTT 536

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTS 649
           H ++ EI + + +++  +  HGY P   +   D+ D++++R+L  HSEKLA+A+GL+ T 
Sbjct: 537 HPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTE 596

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
               ++I+++ RIC DCHN +   + +TGREI+VRD  RFHHF +G CSCG++W
Sbjct: 597 AGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 101/214 (47%), Gaps = 5/214 (2%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP--D 164
           N R +EALE F+ ++ + G +    T   +ISAC  L +++    +      +GF P  +
Sbjct: 253 NGRPKEALEYFQKMQ-DVGMETDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGN 311

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           + + + ++ M+ +CG   +A ++F+ M ERN+ S + +I G    G    A  LF D+ +
Sbjct: 312 VVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLK 371

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSCALIDMYSKCGSIE 283
                   TF  ++ A +   L+  G+QL +   K  G   +      ++D+  + G +E
Sbjct: 372 TEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLE 431

Query: 284 DAQGVFDEMSEKTTVG-WNTIIAGYALHGYSEEA 316
           +A  +   M  +   G W  ++    +HG  + A
Sbjct: 432 EALDLVKTMPMEPNGGVWGALLGACRIHGNPDIA 465


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/594 (34%), Positives = 342/594 (57%), Gaps = 38/594 (6%)

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL--FDEMPERNLVSCNMIIAG 205
           ++K+V ++++  G     Y+  +++ M  +  + + +  L  F ++   N      +I G
Sbjct: 57  QIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRG 116

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG-FGD 264
               G   E+   +  +  +     S TF+ + +A      + +GKQ+H+  + +G F  
Sbjct: 117 YALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSE------------------------------ 294
           +++V  ++ID+Y KCG +  A+ VFDEMSE                              
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP 236

Query: 295 -KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
            K  V W  ++ GYA +G  +EAL+ + +M+D G++ D  T + +I  C +L +++HA  
Sbjct: 237 SKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANW 296

Query: 354 AHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
                 R GFG   ++V  SAL+D YSK G  ++A  VF+ M  +NV S++++I GY  H
Sbjct: 297 IRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMH 356

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           GR   A++LF  ML   +RPN VTF+ +LSACS +GL E+G ++F  M +   + P   H
Sbjct: 357 GRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDH 416

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           YACM++LLGR G L+EA  L++  P +    +W ALL ACR++GN ++ + AA +L+ +E
Sbjct: 417 YACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLE 476

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK-QPHVFLSGDQS 590
           P  + NY++L NIY S+G+ +E +++ + +R KG +  P CSW E K  + H F +GD +
Sbjct: 477 PNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTT 536

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTS 649
           H ++ EI + + +++  +  HGY P   +   D+ D++++R+L  HSEKLA+A+GL+ T 
Sbjct: 537 HPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTE 596

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
               ++I+++ RIC DCHN +   + +TGREI+VRD  RFHHF +G CSCG++W
Sbjct: 597 AGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 109/245 (44%), Gaps = 5/245 (2%)

Query: 76  YTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDA 135
           Y +    S L D    K      + +     N R +EALE F+ ++ + G +    T   
Sbjct: 222 YGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQ-DVGMETDEVTLAG 280

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEP--DLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193
           +ISAC  L +++    +      +GF P  ++ + + ++ M+ +CG   +A ++F+ M E
Sbjct: 281 VISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKE 340

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL 253
           RN+ S + +I G    G    A  LF D+ +        TF  ++ A +   L+  G+QL
Sbjct: 341 RNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQL 400

Query: 254 HSCALK-MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHG 311
            +   K  G   +      ++D+  + G +E+A  +   M  +   G W  ++    +HG
Sbjct: 401 FAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHG 460

Query: 312 YSEEA 316
             + A
Sbjct: 461 NPDIA 465


>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 572

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/562 (37%), Positives = 331/562 (58%), Gaps = 4/562 (0%)

Query: 146 IREVKRVFSYMLSTGFEPDLY-MRNRVLLMHV-RCGMMIDARRLFDEMPERNLVSCNMII 203
           + E K+V +++L  G   D + M N V    + + G M  A  +F ++ E +    N +I
Sbjct: 11  MEEFKQVHAHVLKCGIFFDTFCMSNLVATCALTKWGSMDYACSIFTQIDEPSSFDYNTMI 70

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
            G ++     EA LL++D+ E   +    T+  +++A + L ++  G Q+H    KMG  
Sbjct: 71  RGNVNDMKLEEALLLYVDMIERGVEPDKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLE 130

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
            +V V  +LI+MY KCG I++A  VF+ M EK+   W+ II  +A      E L L  +M
Sbjct: 131 GDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAHACVEMWNECLMLLGKM 190

Query: 324 RDSG-VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
              G  +++  T   ++  CT L S +  K  H  L+R+   L++V  ++L+D Y K G 
Sbjct: 191 SSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKTSLIDMYVKSGC 250

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           +E    VF  M  KN  S+  +I+G   HGRG+EA+++F +M+  G+ P+ V ++ V SA
Sbjct: 251 LEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSA 310

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
           CS +GL E G + F+SM  +HKI+P   HY CM++LLGR G+L EA+ LI+    K    
Sbjct: 311 CSHAGLVEEGLQCFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIKPNDV 370

Query: 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           +W +LL+AC+V+ NLE+GK AAE L+ +      +Y+VL N+Y  + K  + A++   L 
Sbjct: 371 IWRSLLSACKVHHNLEIGKIAAENLFMLNQNNSGDYLVLANMYAKAQKWDDVAKIRTKLA 430

Query: 563 RKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLP 622
            + L   P  S IE K++ + F+S D+S  Q   IY  + +M  ++   GY+P+   +L 
Sbjct: 431 ERNLVQTPGFSLIEAKRKVYKFVSQDKSIPQWNIIYEMIHQMEWQLKFEGYIPDTSQVLL 490

Query: 623 DVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREI 681
           DVD++E++  L +HS+KLA+AFGLI+TS+ +PL+I ++ R+C DCH   K I+M+  REI
Sbjct: 491 DVDDEEKKERLKFHSQKLAIAFGLIHTSEGSPLRITRNLRMCSDCHTYTKYISMIYEREI 550

Query: 682 VVRDASRFHHFKDGMCSCGDYW 703
            VRD  RFHHFK+G CSC DYW
Sbjct: 551 TVRDRLRFHHFKNGSCSCKDYW 572



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 163/359 (45%), Gaps = 38/359 (10%)

Query: 88  TQMKKPSA-GICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           TQ+ +PS+    + I   V + +  EAL L+ +   E G +    TY  ++ AC  L  +
Sbjct: 56  TQIDEPSSFDYNTMIRGNVNDMKLEEALLLY-VDMIERGVEPDKFTYPFVLKACSLLGVV 114

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
            E  +V  ++   G E D+ ++N ++ M+ +CG + +A  +F+ M E+++ S + II   
Sbjct: 115 DEGIQVHGHVFKMGLEGDVIVQNSLINMYGKCGEIKNACDVFNGMDEKSVASWSAIIGAH 174

Query: 207 IDSGDYLEAFLLFLDLWEEFSDC--GSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
                + E  +L   +  E   C     T   ++ A   L    +GK +H   L+     
Sbjct: 175 ACVEMWNECLMLLGKMSSE-GRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISEL 233

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           NV V  +LIDMY K G +E    VF  MSEK    +  +I+G A+HG  +EAL ++ EM 
Sbjct: 234 NVVVKTSLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMI 293

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           + G+  D   +  +   C+           HAGLV  G          L  F S      
Sbjct: 294 EEGLAPDDVVYVGVFSACS-----------HAGLVEEG----------LQCFKSMQ---- 328

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
                F+  +   V  +  ++   G  G  +EA EL + M    ++PN V + ++LSAC
Sbjct: 329 -----FEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSM---SIKPNDVIWRSLLSAC 379



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 8/206 (3%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + E L L   +  EG   V  ST   ++SAC  L S    K +   +L    E ++ ++ 
Sbjct: 180 WNECLMLLGKMSSEGRCRVEESTLVNVLSACTHLGSPDLGKCIHGILLRNISELNVVVKT 239

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+V+ G +    R+F  M E+N  S  ++I+G+   G   EA  +F ++ EE    
Sbjct: 240 SLIDMYVKSGCLEKGLRVFKNMSEKNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAP 299

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC----ALIDMYSKCGSIEDA 285
               +  +  A +   L+  G Q   C   M F   +  +      ++D+  + G +++A
Sbjct: 300 DDVVYVGVFSACSHAGLVEEGLQ---CFKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEA 356

Query: 286 QGVFDEMSEKTT-VGWNTIIAGYALH 310
             +   MS K   V W ++++   +H
Sbjct: 357 YELIKSMSIKPNDVIWRSLLSACKVH 382


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 200/547 (36%), Positives = 325/547 (59%), Gaps = 11/547 (2%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D+   N ++  +   G + D  RLF EMP RN++S   +I G+   G   EA  LF    
Sbjct: 118 DIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLF---- 173

Query: 224 EEFSDCG------SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
            +   CG      S T+  +I A A    +  G Q+H+   K+G+  + ++S ALI  Y+
Sbjct: 174 RQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYA 233

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
            C  +ED+  VF        V W  ++ GY L+   E+AL ++ EM   GV  +  +F+ 
Sbjct: 234 NCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTS 293

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
            +  C  L +L+  ++ H   V+ G   D+   ++L+  Y + G + D   +F ++  KN
Sbjct: 294 ALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKN 353

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           ++SWN++I G   HG G  A+  F QM+ + + P+ +TF  +LSACS SG+S++G  +F+
Sbjct: 354 IVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFK 413

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
             S +   + +  HYACM+++LGR G L+EA  LIR  P K    +W  LL+AC ++  L
Sbjct: 414 YFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKL 473

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
           E+ + AA+ +  +EP   S YV+L N+Y S+ +  + + + R ++++G+   P  SWI +
Sbjct: 474 EVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITI 533

Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHS 636
           K   + FLSGD+SH  +  IY+K++ +  ++ + GYVP+++  L DV DEQ++ +LSYHS
Sbjct: 534 KGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHS 593

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           E+LA+ FGLI+T + + + ++++ R+C DCH+AIKLIA +  R+I+VRD++RFHHF DG 
Sbjct: 594 ERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGR 653

Query: 697 CSCGDYW 703
           CSCGDYW
Sbjct: 654 CSCGDYW 660



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 166/348 (47%), Gaps = 36/348 (10%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDV--GSSTYDALISACIGLRSIREVKRVFSYM 156
           S I  L  + R  EAL LF  +    G +V   SSTY  +I+AC    ++ +  ++ +++
Sbjct: 155 SMIGGLDQHGRSEEALGLFRQM-MGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHV 213

Query: 157 LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF 216
              G+  D Y+   ++  +  C  M D+ R+F      N+V    ++ G   +  + +A 
Sbjct: 214 FKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDAL 273

Query: 217 LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276
            +F ++  E       +F + + +  GLE +  G+++H+ A+K+G   +VFV  +LI MY
Sbjct: 274 KVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMY 333

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
            +CG++ D   +F  +S+K  V WN++I G A HG    AL  + +M  S V+ D  TF+
Sbjct: 334 YRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEITFT 393

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            ++  C+           H+G+ + G          L  ++S+    + A    D   C 
Sbjct: 394 GLLSACS-----------HSGMSQKG--------RCLFKYFSE---NKSAEVKLDHYAC- 430

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
                  ++   G  G+ EEA EL   M    ++ N + +L +LSAC+
Sbjct: 431 -------MVDILGRSGKLEEAEELIRNM---PVKANSMVWLVLLSACT 468



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 107/196 (54%), Gaps = 13/196 (6%)

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           I++A+ VFD++S      +  +I GYA +   + AL L+YEM    VK D  +++ +I+ 
Sbjct: 11  IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMP---VK-DVVSWNSMIKG 66

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C   A L  A++    +        +V+ + +++ + ++G+IE A  +F KM  +++ +W
Sbjct: 67  CFDCADLTMARKLFDEMPER----SVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAW 122

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF-QSMS 460
           N++I GY  +GR E+ + LF++M       N +++ +++    + G SE    +F Q M 
Sbjct: 123 NSMIYGYCCNGRVEDGLRLFQEMPCR----NVISWTSMIGGLDQHGRSEEALGLFRQMMG 178

Query: 461 RDHKIKPRAMHYACMI 476
              ++KP +  Y C+I
Sbjct: 179 CGVEVKPTSSTYCCVI 194


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/602 (35%), Positives = 345/602 (57%), Gaps = 9/602 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           NK + + L+LF+ +  EG   V S      + AC GL   +  K   S  +    E D Y
Sbjct: 91  NKCFYDVLQLFKRMLKEGKL-VDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPY 149

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   ++ ++   G + +A ++F+E+P +N V   ++I G ++  +    F LF  +    
Sbjct: 150 VAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSG 209

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD-NVFVSCALIDMYSKCGSIEDA 285
            +        +I+A   +     GK  H   +K  F D N F+  +L+DMY KCG ++ A
Sbjct: 210 FELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFA 269

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
             +F+E+S +  V W+ IIAG+A +G + E++ ++ +M    V  +  TF+ I+  C+ L
Sbjct: 270 LKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSL 329

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
            SL+  +  H  ++R+G  LD+   ++ +D Y+K G I  A  VF ++  KNV SW+ +I
Sbjct: 330 GSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWSTMI 389

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
            G+G HG   EA+ LF +M      PN VTF++VLSACS SG  E GW  F+SMSRD+ I
Sbjct: 390 NGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRDYGI 449

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
            P   HYACM++LLGR G +DEA + I   P +   + W ALL ACR++   EL +  A+
Sbjct: 450 TPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEEVAK 509

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
           KL  +E ++   YV+L NIY   G  +   +    +  KG+  +   + IE++++ ++F 
Sbjct: 510 KLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKLYLFS 569

Query: 586 SGDQ---SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAV 641
           S D+    + Q + ++  +   M E+   GYVP+ + +L DVD++ +Q VL  HSEKLA+
Sbjct: 570 SEDRFAYKNTQIESLWNSLKERMREL---GYVPDLRFVLHDVDDEVKQEVLCGHSEKLAI 626

Query: 642 AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
            FGL+N+ +  P++I ++ R+C DCH A K I+++T R+I++RD  RFHH +DG+CSCGD
Sbjct: 627 VFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCSCGD 686

Query: 702 YW 703
           YW
Sbjct: 687 YW 688



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 40/190 (21%), Positives = 85/190 (44%), Gaps = 8/190 (4%)

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           T   + R    LAS     Q +A ++ +     ++    +   Y + G +  A   F+ +
Sbjct: 17  TLLSLFRFTKTLAS---NHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHI 73

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE-RG 452
             +N+ SWN ++A +  +    + ++LF++ML  G   +    +  + AC   GLS  +G
Sbjct: 74  TFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKAC--FGLSLFQG 131

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACR 512
            ++F S++   +++        ++ +    G L+EA  +    P K +  +W  ++    
Sbjct: 132 AKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSV-IWGVMIKG-H 189

Query: 513 VNGNLELGKF 522
           +N + E G F
Sbjct: 190 LNFSEEFGVF 199


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/593 (34%), Positives = 331/593 (55%), Gaps = 2/593 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E  ELF+ +  +             IS+C     + E K+   Y L +G E   Y++N +
Sbjct: 106 EVFELFKKMVVKDNIFPNEYVIATAISSCDSQMYV-EGKQCHGYALKSGLEFHQYVKNAL 164

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + ++ +C  +  A ++   +P  ++   N+++ G++      EA  +   +  E  +  +
Sbjct: 165 IQLYSKCSDVGAAIQILYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNN 224

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T+ T+ R  A L+ I++GKQ+H+  LK     +V++  ++IDMY KCG++   +  FD 
Sbjct: 225 ATYVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDR 284

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           +  +  V W +IIA Y  + + EEAL+L+ +M    +  + +T +++      L++L   
Sbjct: 285 LQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFNSAAGLSALCLG 344

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
            Q HA   + G   +++  +AL+  Y K G I  A+ VF  M C N+I+WNA+I G+ +H
Sbjct: 345 DQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHH 404

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G G+EA+ +F+ M+  G RPN+VTF+ V+ AC+   L + G+  F  + +  +I P   H
Sbjct: 405 GLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPGLEH 464

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           Y C++ LL R G LDEA   +R          W  LL AC V+ + + G+  AE L  +E
Sbjct: 465 YTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLLQLE 524

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P  +  Y++L N++    +     E+ + +R + ++  P  SW+E++   HVF S D  H
Sbjct: 525 PRDVGTYILLSNMHARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSEDIKH 584

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSD 650
            +   IY  V  ++ +I   GYVP+   +L D+ DEQ+   LSYHSEKLAVA+GL+ T  
Sbjct: 585 PEANLIYENVKDLLSKIRPLGYVPDIDNVLHDIEDEQKVDNLSYHSEKLAVAYGLMKTPS 644

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             P+ ++++ R+C DCH AIKLI+ V  R IVVRDA+RFHHF++G CSCGDYW
Sbjct: 645 GAPITVIKNLRMCDDCHTAIKLISKVANRVIVVRDANRFHHFQNGCCSCGDYW 697



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 149/281 (53%), Gaps = 2/281 (0%)

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N ++ ++V+C  +  AR+LFD MP RN+VS + ++AG + +G+ LE F LF  +  + + 
Sbjct: 61  NSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNI 120

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
             +        +S   ++   GKQ H  ALK G   + +V  ALI +YSKC  +  A  +
Sbjct: 121 FPNEYVIATAISSCDSQMYVEGKQCHGYALKSGLEFHQYVKNALIQLYSKCSDVGAAIQI 180

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
              +       +N ++ G   H +  EA+D+   +   G++ ++ T+  I R+C  L  +
Sbjct: 181 LYTVPGNDIFCYNLVVNGLLQHTHMAEAVDVLKLIISEGIEWNNATYVTIFRLCASLKDI 240

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
              KQ HA +++     D+   S+++D Y K G +   R  FD++  +NV+SW ++IA Y
Sbjct: 241 TLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAY 300

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449
             +   EEA+ LF +M ++ + PN  T   + +  S +GLS
Sbjct: 301 FQNEFFEEALNLFSKMEIDCIPPNEYTMAVLFN--SAAGLS 339



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 353 QAHAGLVRHGFGLDIVAN-SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
            AH  +  H +    V   ++L++ Y K   +  AR +FD M  +NV+SW+AL+AGY  +
Sbjct: 42  HAHLTITNHNYRDSKVNQLNSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQN 101

Query: 412 GRGEEAVELFEQMLL-NGMRPNHVTFLAVLSAC 443
           G   E  ELF++M++ + + PN       +S+C
Sbjct: 102 GNPLEVFELFKKMVVKDNIFPNEYVIATAISSC 134


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/609 (35%), Positives = 354/609 (58%), Gaps = 17/609 (2%)

Query: 107  NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR--------EVKRVFSYMLS 158
            N +  E L++F  +  E   +  S T  ++  AC  L S+R        E + V  +++ 
Sbjct: 469  NGQASEGLDMFSQMISEA-VEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIR 527

Query: 159  TGFEPDL-YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
               +P+L ++   ++ ++   G + D  ++F+ + E+ ++S N +I+    +G   EA L
Sbjct: 528  RAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALL 587

Query: 218  LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG-FGDNVFVSCALIDMY 276
            LF+ +  +     S + A+ + A   +    +G Q+H   +K G F D  FV  ALIDMY
Sbjct: 588  LFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFND--FVQNALIDMY 645

Query: 277  SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
            +KCG +  A  +F+++ EK+ V WN++I G++ +GYS EA+ L+ +M  + VKMD  TF 
Sbjct: 646  AKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFL 705

Query: 337  MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
             +I+ C+ L  LE  K  H  L+ +G   D   ++AL D YSK G ++ A  VFD+M  +
Sbjct: 706  SVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSER 765

Query: 397  NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
            +++SW+ +IAGYG HG+    + LF QML +G++PN +TF+ +LSACS +G  E G   F
Sbjct: 766  SIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYF 825

Query: 457  QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
             SMS +  ++P+  H+ACM++LL R G L+ A+ +I   PF    ++W ALL  CR++  
Sbjct: 826  NSMS-EFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKR 884

Query: 517  LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
            +++ K   + L  ++      Y +L NIY   G   +  +V   ++ KGLR +P  S IE
Sbjct: 885  IDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIE 944

Query: 577  VKKQPHVFLSGDQSHVQTKEIYRKVD--RMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY 634
            + K+ + F  GD SH QTK+IYR ++  R ++    +   P+   +      +E  V+S 
Sbjct: 945  IDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVS- 1003

Query: 635  HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKD 694
            HSEKLA+AFG+INT   T L+I ++ R+C DCH+  K+ + +TGREI++RD +RFH F++
Sbjct: 1004 HSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRN 1063

Query: 695  GMCSCGDYW 703
            G CSC DYW
Sbjct: 1064 GSCSCNDYW 1072



 Score = 87.4 bits (215), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 97/430 (22%), Positives = 169/430 (39%), Gaps = 95/430 (22%)

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
           F+   SR+  +  R +    L     QLH+     G   +   S  LI+ Y++ G  E +
Sbjct: 344 FTLNSSRSLTSHKRCATSTTLT----QLHAHLFITGLHRHPPASTKLIESYAQIGIFESS 399

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICT- 343
           + VFD   +  +  W  +I  Y   G+ EEA+ LY+EM      ++ +F F  +++ C+ 
Sbjct: 400 KRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSG 459

Query: 344 ---------------------------------------------------RLASLEHAK 352
                                                              RL  ++  +
Sbjct: 460 FGDLSVGGKNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGR 519

Query: 353 QAHAGLVRHGFG--LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
             H  ++R      LD +   AL++ Y+  G + D   VF+ +  K ++SWN LI+ +  
Sbjct: 520 SVHGFVIRRAMDPELDFLG-PALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTR 578

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI---------FQSMSR 461
           +G+ EEA+ LF QM   G+ P+  +  + LSAC     S+ G +I         F    +
Sbjct: 579 NGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQ 638

Query: 462 D-------------------HKIKPRAM-HYACMIELLGREGLLDEAFALIRGAPF---K 498
           +                    KIK +++  +  MI    + G   EA  L         K
Sbjct: 639 NALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVK 698

Query: 499 TTKNMWAALLTACRVNGNLELGKFAAEKL--YGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
             K  + +++ AC   G LE GK+   KL  YG+  +   +   L ++Y+  G+L+ A  
Sbjct: 699 MDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLD-TALTDMYSKCGELQMAHG 757

Query: 557 VIRTLRRKGL 566
           V   +  + +
Sbjct: 758 VFDRMSERSI 767


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/631 (34%), Positives = 337/631 (53%), Gaps = 36/631 (5%)

Query: 109 RYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
           R+ + +  F E+L+  G     +     ++  C GL  +   +R+  ++L +G  PD+ +
Sbjct: 104 RHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVL 163

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF-------L 220
            N VL M+ +CG    ARR F  M +++  S N++I   +  GD + A  LF       +
Sbjct: 164 CNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQDGDLVGATQLFDESSLRDV 223

Query: 221 DLWEEFSDCGSR-------------------TFA----TMIRASAGL-ELISVGKQLHSC 256
             W        R                   TF+    +M+ A AGL     +G+QLH  
Sbjct: 224 SSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGR 283

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD---EMSEKTTVGWNTIIAGYALHGYS 313
            +     ++ FV C+L+DMY KCG +E A  +FD   + +E     W+T++AGY  +G  
Sbjct: 284 VVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGRE 343

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
           EEAL+ +  M   GV    F  + +   C     +E  +Q H  + + G   D    SA+
Sbjct: 344 EEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAI 403

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           VD YSK G +EDA  +F     KNV  W  ++  Y +HG+G  A+E+F +M    + PN 
Sbjct: 404 VDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNE 463

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
           +T +AVLSACS SGL   G+  F  M  ++ I P   HY CM++L GR GLLD+A   I 
Sbjct: 464 ITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIE 523

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
                    +W  LL+ACR++ ++E  + A+EKL  +E     +YV++ N+Y ++ K  +
Sbjct: 524 ENKISHEAVVWKTLLSACRLHKHIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLD 583

Query: 554 AAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGY 613
             ++  +++ + +R  P  SWI +K   H F++ D SH ++ EIY  ++++M  + + GY
Sbjct: 584 TFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEMGY 643

Query: 614 VPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKL 672
                 ++ D++E+++   L +HSEKLA+AFG+I+T   T L+I ++ R+C DCH AIK 
Sbjct: 644 TSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGIISTPVGTALRIFKNLRVCEDCHEAIKF 703

Query: 673 IAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I   T REIVVRD  RFHHFKDG CSC D+W
Sbjct: 704 ITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 109/404 (26%), Positives = 194/404 (48%), Gaps = 46/404 (11%)

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF--ATMIRA 240
           +A R+FD  P R+L +   II+G    G + +    F ++ +E        F  A ++R 
Sbjct: 76  NAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRC 135

Query: 241 SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS------------------- 281
            AGL  +  G+++H   L+ G   +V +  A++DMY+KCG                    
Sbjct: 136 CAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSW 195

Query: 282 -------IED-----AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
                  ++D     A  +FDE S +    WNTI++G   HG++ EAL    +M  +GV 
Sbjct: 196 NIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVT 255

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
             ++T+SM+  +   L+S +  +Q H  +V      D     +L+D Y K G +E A  +
Sbjct: 256 FSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSI 315

Query: 390 FDK---MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           FD+          +W+ ++AGY  +GR EEA+E F +ML  G+        +V SAC+ +
Sbjct: 316 FDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANA 375

Query: 447 GLSERGWEIFQSMSR-DHKIK-PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
           G+ E+G ++   + +  H+   P A   + ++++  + G L++A  + R A  K    +W
Sbjct: 376 GMVEQGRQVHGFVEKLGHRFDAPLA---SAIVDMYSKSGSLEDACRIFRSAQTKNVA-LW 431

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIYNS 547
             +L +   +G    G+ A E    M+ EK + N + L+ + ++
Sbjct: 432 TTMLCSYASHGQ---GRMALEIFSRMKAEKIMPNEITLVAVLSA 472



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/363 (21%), Positives = 144/363 (39%), Gaps = 82/363 (22%)

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD--SGVKMDHFTFSMII 339
           + +A  VFD    ++   W +II+G A  G   + +  + EM D       + F  + ++
Sbjct: 74  LHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVL 133

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK-------------------- 379
           R C  L  +E  ++ H  ++R G   D+V  +A++D Y+K                    
Sbjct: 134 RCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDAT 193

Query: 380 -W----------GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
            W          G +  A  +FD+   ++V SWN +++G   HG   EA+   +QM+  G
Sbjct: 194 SWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAG 253

Query: 429 MRPNHVTFLAVLS-----------------------------ACS------RSGLSERGW 453
           +  ++ T+  V +                              CS      + G  E   
Sbjct: 254 VTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESAL 313

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR-----GAPFKTTKNMWAALL 508
            IF   S     + R   ++ M+    + G  +EA    R     G P    + +  ++ 
Sbjct: 314 SIFDRWS--DFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVP--AGQFILTSVA 369

Query: 509 TACRVNGNLELGKFA---AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
           +AC   G +E G+      EKL       L++ +V  ++Y+ SG L++A  + R+ + K 
Sbjct: 370 SACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIV--DMYSKSGSLEDACRIFRSAQTKN 427

Query: 566 LRM 568
           + +
Sbjct: 428 VAL 430


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/595 (35%), Positives = 326/595 (54%), Gaps = 67/595 (11%)

Query: 176 VRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE---------- 225
           + C  M+ AR+LFDEMP+R+ ++   +I G + + D   A  +F  + E           
Sbjct: 203 IPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMIS 262

Query: 226 -FSDCG--------------------SRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
            +  CG                      T+ T+I A A +    +GKQ+H+  LK     
Sbjct: 263 GYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNP 322

Query: 265 N----VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY------------- 307
           N    + VS ALI +Y K   +++A+ +F  M  +  + WN I++GY             
Sbjct: 323 NHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFF 382

Query: 308 ------------------ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
                             A +G+ +E L L+ +MR  G +   F F+  +  C+ L +LE
Sbjct: 383 EEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALE 442

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
           + +Q HA LV  G+   +   +A++  Y+K G +E A  VF  M   +++SWN++IA  G
Sbjct: 443 NGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALG 502

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            HG G +A+ELF+QML  G+ P+ +TFL VL+ACS +GL E+G   F SM   + I P  
Sbjct: 503 QHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCE 562

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HYA M++L  R G+   A  +I   P K    +W ALL  CR++GN++LG  AAE+L+ 
Sbjct: 563 DHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFK 622

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           + P+    YV+L NIY   G+  + A+V + +R + +R  PACSWIEV+ + HVF+  D 
Sbjct: 623 LMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDD 682

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINT 648
            H +   +YR ++++ LE+ K GY+P+ K +L D++ EQ++  LS HSEKLAV FG++  
Sbjct: 683 VHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKL 742

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
                +++ ++ RIC DCHNA K ++ V  REI+VRD  RFHHFK+G CSC DYW
Sbjct: 743 PPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 141/563 (25%), Positives = 238/563 (42%), Gaps = 146/563 (25%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE----------- 193
           S    + V ++M+++GF+P  +  NR+L M+ +   ++ AR+LF+E+P            
Sbjct: 28  SFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLIT 87

Query: 194 ----------------------RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
                                 R+ V  N +I G   +GD   A  LF  +  +      
Sbjct: 88  AYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDD 147

Query: 232 RTFATMIRASAGLELISVGK-----QLHSCALKMGFG-DNVFVSCALIDMYSK------- 278
            TF +++ A     ++ VG      Q+H   +K G G  +  V  AL+ +Y K       
Sbjct: 148 FTFTSVLSAL----VLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKRASELGI 203

Query: 279 -CGSIEDAQGVFDEMSEK-----TTV--------------------------GWNTIIAG 306
            C ++  A+ +FDEM ++     TT+                           WN +I+G
Sbjct: 204 PCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISG 263

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR------ 360
           Y   G  +EAL L  +MR  G++ D  T++ II  C  + S +  KQ HA +++      
Sbjct: 264 YVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILKNELNPN 323

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
           H F L +  ++AL+  Y K  ++++AR +F  M  +N+I+WNA+++GY N GR EEA   
Sbjct: 324 HSFCLSV--SNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSF 381

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
           FE+M +     N +T   ++S  +++G  + G ++F+ M  D                  
Sbjct: 382 FEEMPVK----NLLTLTVMISGLAQNGFGDEGLKLFKQMRLD------------------ 419

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE-KLSNYV 539
                           F+     +A  LTAC V G LE G+    +L  +  E  LS   
Sbjct: 420 ---------------GFEPCDFAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVGN 464

Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH-VQTKEIY 598
            ++++Y   G ++ A  V  T+    L      SW        +   G   H V+  E++
Sbjct: 465 AMISMYAKCGVVEAAESVFVTMPSVDL-----VSW-----NSMIAALGQHGHGVKAIELF 514

Query: 599 RKVDRMMLEISKHGYVPEEKTLL 621
              D+M+    K G  P+  T L
Sbjct: 515 ---DQML----KEGVFPDRITFL 530



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/355 (27%), Positives = 169/355 (47%), Gaps = 42/355 (11%)

Query: 110 YREALELFEILEFEG-GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD---- 164
           ++EAL L   + F G  FD    TY  +ISAC  + S +  K++ +Y+L     P+    
Sbjct: 270 FQEALTLCRKMRFLGIQFD--DITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFC 327

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL-- 222
           L + N ++ ++ +   + +AR++F  MP RN+++ N I++G +++G   EA   F ++  
Sbjct: 328 LSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPV 387

Query: 223 --------------WEEFSDCGSRTFATM---------------IRASAGLELISVGKQL 253
                            F D G + F  M               + A + L  +  G+QL
Sbjct: 388 KNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSVLGALENGRQL 447

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           H+  + +G+  ++ V  A+I MY+KCG +E A+ VF  M     V WN++IA    HG+ 
Sbjct: 448 HAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHG 507

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN--S 371
            +A++L+ +M   GV  D  TF  ++  C+    +E  +     ++   +G+    +  +
Sbjct: 508 VKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLE-SYGITPCEDHYA 566

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQML 425
            +VD + + G    AR V D M  K     W AL+AG   HG  +  +E  EQ+ 
Sbjct: 567 RMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLF 621


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/607 (35%), Positives = 334/607 (55%), Gaps = 24/607 (3%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N      LE+++ + + G  DV  +T  +++  C    ++   K V S  + 
Sbjct: 221 SMISGYVSNGLTERGLEIYKQMMYLG-IDVDLATIISVLVGCANSGTLSLGKAVHSLAIK 279

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           + FE  +   N +L M+ +CG +  A R+F++M ERN+VS   +IAG    G    A  L
Sbjct: 280 STFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRL 339

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
              + +E          +++ A A    +  GK +H          N+FV  AL+DMY+K
Sbjct: 340 LQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTK 399

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CGS++ A  VF  M  K  + WNT+I                       +K D  T + I
Sbjct: 400 CGSMDGANSVFSTMVVKDIISWNTMIGE---------------------LKPDSRTMACI 438

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C  L++LE  K+ H  ++R+G+  D    +ALVD Y K G +  AR +FD +  K++
Sbjct: 439 LPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SW  +I+GYG HG G EA+  F +M   G+ P+ V+F+++L ACS SGL E+GW  F  
Sbjct: 499 VSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYI 558

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M  D  I+P+  HYACM++LL R G L +A+  I   P      +W ALL  CR+  ++E
Sbjct: 559 MKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIE 618

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           L +  AE+++ +EPE    YV+L NIY  + K +E   +   + +KGLR  P CSWIE+K
Sbjct: 619 LAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIK 678

Query: 579 KQPHVFLSGDQ-SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHS 636
            + ++F+SG+  SH  +K+I   + +M  ++ + GY P+ K  L + DE Q++  L  HS
Sbjct: 679 GKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHS 738

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           EKLA+AFGL+       +++ ++ R+C DCH   K ++  T REIV+RD++RFHHFK+G 
Sbjct: 739 EKLAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKNGY 798

Query: 697 CSCGDYW 703
           CSC  +W
Sbjct: 799 CSCRGFW 805



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 133/519 (25%), Positives = 230/519 (44%), Gaps = 109/519 (21%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           + TY +++  C G +S+ + K+V S + S     D  +  +++ ++  CG + + RR+FD
Sbjct: 99  TKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFD 158

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFL----------------DLWEEFSDCGSRT 233
            M ++N+   N +++     GD+ E+  LF                 +L+++  D    +
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVIS 218

Query: 234 FATMIRASA-------GLEL----------------------------ISVGKQLHSCAL 258
           + +MI           GLE+                            +S+GK +HS A+
Sbjct: 219 WNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAI 278

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
           K  F   +  S  L+DMYSKCG ++ A  VF++M E+  V W ++IAGY   G S+ A+ 
Sbjct: 279 KSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIR 338

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378
           L  +M   GVK+D    + I+  C R  SL++ K  H  +  +    ++   +AL+D Y+
Sbjct: 339 LLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYT 398

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
           K G ++ A  VF  M+ K++ISWN +I        GE             ++P+  T   
Sbjct: 399 KCGSMDGANSVFSTMVVKDIISWNTMI--------GE-------------LKPDSRTMAC 437

Query: 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPR------------------------------ 468
           +L AC+     ERG EI   + R+     R                              
Sbjct: 438 ILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD 497

Query: 469 AMHYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWAALLTACRVNGNLELG---KF 522
            + +  MI   G  G  +EA A    +R A  +  +  + ++L AC  +G LE G    +
Sbjct: 498 LVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFY 557

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
             +  + +EP KL +Y  ++++ + +G L +A E I TL
Sbjct: 558 IMKNDFNIEP-KLEHYACMVDLLSRTGNLSKAYEFIETL 595



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 133/280 (47%), Gaps = 51/280 (18%)

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
           S+  ++T++++++  AG + ++ GK++HS         +  +   L+ +Y+ CG +++ +
Sbjct: 95  SELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGR 154

Query: 287 GVFDEMSEKTT------------------------------------------------- 297
            VFD M +K                                                   
Sbjct: 155 RVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDR 214

Query: 298 --VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             + WN++I+GY  +G +E  L++Y +M   G+ +D  T   ++  C    +L   K  H
Sbjct: 215 DVISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVH 274

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
           +  ++  F   I  ++ L+D YSK G ++ A  VF+KM  +NV+SW ++IAGY   GR +
Sbjct: 275 SLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSD 334

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
            A+ L +QM   G++ + V   ++L AC+RSG  + G ++
Sbjct: 335 GAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDV 374



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 102/223 (45%), Gaps = 28/223 (12%)

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H    K  F   +F SC  I + +      D Q             +N  I  +   G 
Sbjct: 32  IHKPTSKATFFSPIFSSCLPIRISATPTRTIDRQ----------VTDYNAKILHFCQLGN 81

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            E A++L    + S  +++  T+S ++++C    SL   K+ H+ +  +   +D V    
Sbjct: 82  LENAMELVCMCQKS--ELETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLK 139

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML---LNGM 429
           LV  Y+  G +++ R VFD M  KNV  WN +++ Y   G  +E++ LF+ M+   + G 
Sbjct: 140 LVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 430 RPNH-------------VTFLAVLSACSRSGLSERGWEIFQSM 459
           RP               +++ +++S    +GL+ERG EI++ M
Sbjct: 200 RPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQM 242


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/573 (35%), Positives = 335/573 (58%), Gaps = 9/573 (1%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC---GMMIDARRLFDEMP 192
           LIS C    S+RE+ ++ +Y + +  E D+    +++           M  AR LF+ M 
Sbjct: 35  LISKC---NSLRELMQIQAYAIKSHIE-DVSFVAKLINFCTESPTESSMSYARHLFEAMS 90

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           E ++V  N +  G     + LE F LF+++ E+     + TF ++++A A  + +  G+Q
Sbjct: 91  EPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQ 150

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LH  ++K+G  DNV+V   LI+MY++C  ++ A+ VFD + E   V +N +I GYA    
Sbjct: 151 LHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNR 210

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
             EAL L+ EM+   +K +  T   ++  C  L SL+  K  H    +H F   +  N+A
Sbjct: 211 PNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTA 270

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D ++K G ++DA  +F+KM  K+  +W+A+I  Y NHG+ E+++ +FE+M    ++P+
Sbjct: 271 LIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPD 330

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            +TFL +L+ACS +G  E G + F  M     I P   HY  M++LL R G L++A+  I
Sbjct: 331 EITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFI 390

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
              P   T  +W  LL AC  + NL+L +  +E+++ ++     +YV+L N+Y  + K +
Sbjct: 391 DKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWE 450

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
               + + ++ +    +P CS IEV    H F SGD     T +++R +D M+ E+   G
Sbjct: 451 YVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSG 510

Query: 613 YVPEEKTLL-PDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           YVP+   ++  ++++QE+ + L YHSEKLA+ FGL+NT   T +++V++ R+C DCHNA 
Sbjct: 511 YVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAA 570

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           KLI+++ GR++V+RD  RFHHF+DG CSCGD+W
Sbjct: 571 KLISLIFGRKVVLRDVQRFHHFEDGKCSCGDFW 603



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 164/321 (51%), Gaps = 4/321 (1%)

Query: 109 RYREALELFEILE--FEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           R+   LE+F +     E G    + T+ +L+ AC   +++ E +++    +  G + ++Y
Sbjct: 106 RFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVY 165

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   ++ M+  C  +  AR +FD + E  +V  N +I G        EA  LF ++  ++
Sbjct: 166 VCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKY 225

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 T  +++ + A L  + +GK +H  A K  F   V V+ ALIDM++KCGS++DA 
Sbjct: 226 LKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAV 285

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +F++M  K T  W+ +I  YA HG +E+++ ++  MR   V+ D  TF  ++  C+   
Sbjct: 286 SIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTG 345

Query: 347 SLEHAKQAHAGLV-RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNAL 404
            +E  ++  + +V + G    I    ++VD  S+ G +EDA    DK+ +    + W  L
Sbjct: 346 RVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRIL 405

Query: 405 IAGYGNHGRGEEAVELFEQML 425
           +A   +H   + A ++ E++ 
Sbjct: 406 LAACSSHNNLDLAEKVSERIF 426


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/580 (35%), Positives = 355/580 (61%), Gaps = 13/580 (2%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S  Y+ L+ A  G R ++ + +V ++++ +G+    ++  ++L +    G +   R++F 
Sbjct: 12  SPAYNLLLQA--GPR-LKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTRQIFL 68

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLF-LDLWEE--FSDCG--SRTFATMIRASAGL 244
            +P  +    + +   +I S      F ++ L  +     S+    + TF ++I++ A L
Sbjct: 69  IVPNPD----SFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKSCADL 124

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             +  G+ +H   L  GFG +V+V  AL+  Y KCG + +A+ VFD+M +++ V WN++I
Sbjct: 125 VALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVTWNSMI 184

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           +GY  +G+++EA+ L+  M++ GV+ +  TF  ++  C  L +       H   V +G  
Sbjct: 185 SGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWVHEYAVGNGLD 244

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
           L++V  ++L++ Y++ G +  AR VFD M  +NV++W A+I+GYG +G G +AVELF +M
Sbjct: 245 LNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEM 304

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
             NG+ PN +TF+AVLSAC+ +GL   G  +F+SM  ++++ P   H+ C++++LGR GL
Sbjct: 305 RRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCLVDMLGRAGL 364

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           LDEA+  I+    +    +W A+L AC+++ N  LG   AE     EP   ++YV+L NI
Sbjct: 365 LDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGLGAQVAEHRLASEPGNPAHYVILSNI 424

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           Y  +G++ +   V   + RK L+     S I++ ++ ++F  GD+SH +T EIY  +D++
Sbjct: 425 YALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSHTETNEIYHYLDQL 484

Query: 605 MLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
           M +  + GYV    +++ +++E+E+   L YHSEKLA+AFGL+ TS  T ++IV++ R+C
Sbjct: 485 MRKCREAGYVTVSDSVMHELEEEEREYALGYHSEKLAIAFGLLKTSRGTVIRIVKNLRMC 544

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCH+AIK I++++ REI+VRD  RFHHFK+G CSC DYW
Sbjct: 545 EDCHSAIKYISVISNREIIVRDKLRFHHFKNGSCSCLDYW 584


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/607 (33%), Positives = 350/607 (57%), Gaps = 10/607 (1%)

Query: 100 QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           ++ +L     + E++ L+  +    G    + ++  ++ +C  L      +++  ++   
Sbjct: 24  RLRELAYQSLFSESISLYRSM-LRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVTKG 82

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSC--NMIIAGMIDSGDYLEAFL 217
           G E + ++   ++ M+ +CG++ DAR++F+E P+ + +S   N +I+G   +    +A  
Sbjct: 83  GCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAY 142

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           +F  + E      S T   ++      E + +G+ LH   +K G    V V  + I MY 
Sbjct: 143 MFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYM 202

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           KCGS+E  + +FDEM  K  + WN +I+GY+ +G + + L+LY +M+ SGV  D FT   
Sbjct: 203 KCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVS 262

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           ++  C  L + +   +    +  +GF  ++  ++A +  Y++ G +  AR VFD M  K+
Sbjct: 263 VLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKS 322

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           ++SW A+I  YG HG GE  + LF+ M+  G+RP+   F+ VLSACS SGL+++G E+F+
Sbjct: 323 LVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFR 382

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
           +M R++K++P   HY+C+++LLGR G LDEA   I   P +    +W ALL AC+++ N+
Sbjct: 383 AMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNV 442

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT-LRRKGLRMLPACSWIE 576
           ++ + A  K+   EP  +  YV++ NIY+ S K +E    IR  +R +  R  P  S++E
Sbjct: 443 DMAELAFAKVIEFEPNNIGYYVLMSNIYSDS-KNQEGIWRIRVMMRERAFRKKPGYSYVE 501

Query: 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHS 636
            K + H+FL+GD+SH QT+E++R +D +   + +         +  D  E+       HS
Sbjct: 502 HKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELA-----GNMDCDRGEEVSSTTREHS 556

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           E+LA+AFG++N+   T + ++++ R+C DCH  +K ++ +  R+ VVRDASRFH+FKDG+
Sbjct: 557 ERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGV 616

Query: 697 CSCGDYW 703
           CSC DYW
Sbjct: 617 CSCKDYW 623



 Score = 76.3 bits (186), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 139/321 (43%), Gaps = 56/321 (17%)

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           WN  +   A      E++ LY  M  SG   D F+F  I++ C  L+     +Q H  + 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS--WNALIAGYGNHGRGEEA 417
           + G   +    +AL+  Y K G + DAR VF++    + +S  +NALI+GY  + +  +A
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
             +F +M   G+  + VT L ++  C+   + E  W              R++H  C+  
Sbjct: 141 AYMFRRMKETGVSVDSVTMLGLVPLCT---VPEYLW------------LGRSLHGQCV-- 183

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-LS 536
               +G LD   A++         N +  +   C   G++E G+    +L+   P K L 
Sbjct: 184 ----KGGLDSEVAVL---------NSFITMYMKC---GSVEAGR----RLFDEMPVKGLI 223

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS--GDQSHVQT 594
            +  +++ Y+ +G   +  E+   ++  G           V   P   +S     +H+  
Sbjct: 224 TWNAVISGYSQNGLAYDVLELYEQMKSSG-----------VCPDPFTLVSVLSSCAHLGA 272

Query: 595 KEIYRKVDRMMLEISKHGYVP 615
           K+I  +V ++   +  +G+VP
Sbjct: 273 KKIGHEVGKL---VESNGFVP 290


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/535 (38%), Positives = 317/535 (59%), Gaps = 9/535 (1%)

Query: 128 VGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL 187
           VGS   D  + A +GL  IR+ +RVF  M +      + M N ++   +RC M+ DA+ L
Sbjct: 183 VGSPLVD--MYAKMGL--IRDARRVFQEMEAK----TVVMYNTLITGLLRCKMIEDAKGL 234

Query: 188 FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI 247
           F  M +R+ ++   ++ G+  +G  LEA  +F  +  E       TF +++ A   L  +
Sbjct: 235 FQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAAL 294

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
             GKQ+H+   +  + DNVFV  AL+DMYSKC SI  A+ VF  M+ +  + W  +I GY
Sbjct: 295 EEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGY 354

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
             +  SEEA+  + EM+  G+K D FT   +I  C  LASLE   Q H   +  G    I
Sbjct: 355 GQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYI 414

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
             ++ALV  Y K G IEDA  +FD+M   + +SW AL+ GY   G+ +E ++LFE+ML N
Sbjct: 415 TVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLAN 474

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G++P+ VTF+ VLSACSR+GL E+G + F SM +DH I P   HY CMI+L  R G   E
Sbjct: 475 GLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKE 534

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A   I+  P       WA LL++CR+ GN+E+GK+AAE L   +P+  ++YV+L +++ +
Sbjct: 535 AEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAA 594

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
            G+  E A + R +R + ++  P CSWI+ K + H+F + DQSH  +  IY K++ +  +
Sbjct: 595 KGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSK 654

Query: 608 ISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHR 661
           +++ GY P+  ++L DV D  +  ++S+HSEKLA+AFGLI      P++IV++ R
Sbjct: 655 MAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLR 709



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 162/326 (49%), Gaps = 6/326 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + +  L  N    EAL++F  +  EG   +   T+ ++++AC  L ++ E K++ +Y+  
Sbjct: 248 TMVTGLTQNGLQLEALDVFRRMRAEG-VGIDQYTFGSILTACGALAALEEGKQIHAYITR 306

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           T +E ++++ + ++ M+ +C  +  A  +F  M  RN++S   +I G   +    EA   
Sbjct: 307 TWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRA 366

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F ++  +       T  ++I + A L  +  G Q H  AL  G    + VS AL+ +Y K
Sbjct: 367 FSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGK 426

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CGSIEDA  +FDEMS    V W  ++ GYA  G ++E +DL+ +M  +G+K D  TF  +
Sbjct: 427 CGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGV 486

Query: 339 IRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-CK 396
           +  C+R   +E        + + HG        + ++D YS+ GR ++A     +M    
Sbjct: 487 LSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSP 546

Query: 397 NVISWNALIAG---YGNHGRGEEAVE 419
           +   W  L++     GN   G+ A E
Sbjct: 547 DAFGWATLLSSCRLRGNMEIGKWAAE 572


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/619 (36%), Positives = 347/619 (56%), Gaps = 16/619 (2%)

Query: 94  SAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVF 153
           +A +C  I+    N    E+L LF  +   G       T+   + AC  L  +   +++ 
Sbjct: 42  TALMCGHIQ----NGNPLESLLLFSKMGLSG-VKPNDFTFSTNLKACGLLNGLDIGRQIH 96

Query: 154 SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
              + TGF+    + N ++ M+ +CG + +A  +F+ MP RNL+S N +IAG   +G   
Sbjct: 97  DICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCE 156

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF--GDNVFVSCA 271
           +A +LF  + E        TF + ++A + L  I  G Q+H+  +  GF    N  V+ A
Sbjct: 157 KALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGA 216

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
           LID+Y KCG +  A+ VF  + EK  + W  +I GYA  G   E+++L+ ++R+S +++D
Sbjct: 217 LIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVD 276

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
            F  S ++ +    A ++  KQ HA  ++   G+DI   ++++D Y K G I +A  +F 
Sbjct: 277 GFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFS 336

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
           +M  +NVISW  +I GYG HG G+EA+ LF++M L+   P+ VT+LAVL  CS SGL E+
Sbjct: 337 EMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEK 396

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
           G E F  +   H IK R  HYACM++LLGR G L EA  L+   P +    +W  LL+AC
Sbjct: 397 GQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSAC 456

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           RV+G+LELGK     L  ++ E   NYV++ NIY  +G  KE   +   ++ K L+    
Sbjct: 457 RVHGDLELGKEVGGILLRLDSENPVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAG 516

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTK---EIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE 628
            SW+E+ K+ H F  GD +H  T+   EI ++++R M E  + GYV   K  L DV+E+ 
Sbjct: 517 RSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEMERRMKE--ELGYVYGVKYALHDVEEES 574

Query: 629 Q-RVLSYHSEKLAVAFGLINTS---DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVR 684
           +   L  HSEKLA+   L+          +++ ++ R+C DCH  IK ++ +     VVR
Sbjct: 575 KMDNLRVHSEKLAIGLALVCGGLEEGRKVIRVFKNLRVCGDCHEFIKGLSKILRVVFVVR 634

Query: 685 DASRFHHFKDGMCSCGDYW 703
           DA+RFH F+DG+CSC DYW
Sbjct: 635 DANRFHRFEDGLCSCRDYW 653



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 153/310 (49%), Gaps = 36/310 (11%)

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDL 319
           MGFG ++ +S  LI MY KCG +  A  VFD M ++  V W  ++ G+  +G   E+L L
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 320 YYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379
           + +M  SGVK + FTFS  ++ C  L  L+  +Q H   V+ GF +  V  ++++D YSK
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSK 120

Query: 380 WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
            GRI +A  +F+ M  +N+ISWNA+IAGY   G  E+A+ LF++M   G   +  TF + 
Sbjct: 121 CGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTST 180

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499
           L ACS  G  + G +I                                AF +  G  +  
Sbjct: 181 LKACSDLGAIKEGNQI-------------------------------HAFLITGGFLYSV 209

Query: 500 TKNMWAALLTACRVNGNLELGKFAAEKLYG-MEPEKLSNYVVLLNIYNSSGKLKEAAEVI 558
              +  AL+      G L    F A +++  +E + + ++  L+  Y   G L E+ E+ 
Sbjct: 210 NTAVAGALIDLYVKCGKL----FMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELF 265

Query: 559 RTLRRKGLRM 568
           R LR   +++
Sbjct: 266 RQLRESSIQV 275


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/576 (34%), Positives = 336/576 (58%), Gaps = 4/576 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            +   +SAC     ++E  +    +   G     Y+++ ++ M+ RC  +  A ++ D +
Sbjct: 119 VFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTV 178

Query: 192 PE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS 248
           P     ++ S N ++  +++SG   EA  +   + +E       T+  ++   A +  + 
Sbjct: 179 PGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQ 238

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           +G ++H+  L+ G   + FV   LIDMY KCG + +A+ VFD +  +  V W  ++  Y 
Sbjct: 239 LGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYL 298

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
            +GY EE+L+L+  M   G   + +TF++++  C  +A+L H    HA + + GF   ++
Sbjct: 299 QNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKLGFKNHVI 358

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             +AL++ YSK G I+ + +VF  M+ +++I+WNA+I GY +HG G++A+++F+ M+   
Sbjct: 359 VRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAE 418

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
             PN+VTF+ VLSA S  GL + G+     + R+ KI+P   HY CM+ LL R GLLDEA
Sbjct: 419 ECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEA 478

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
              ++    K     W  LL AC V+ N +LG+  AE +  M+P  +  Y +L N+Y  +
Sbjct: 479 ENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKA 538

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
            +      + + +R + ++  P  SW++++   HVFLS   +H ++ +IY+KV +++  I
Sbjct: 539 RRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPESIQIYKKVQQLLALI 598

Query: 609 SKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
              GYVP   ++L DV DEQ++  LSYHSEKLA+A+GL+      P++I+++ R+C DCH
Sbjct: 599 KPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAPIRIIKNLRMCDDCH 658

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            A+KLI+ VT R I+VRDA+RFHHF+DG C+C D+W
Sbjct: 659 TAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 116/404 (28%), Positives = 197/404 (48%), Gaps = 13/404 (3%)

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N ++ ++V+CG +  AR LFD MP RN+VS N+++AG +  G++LE  +LF ++    + 
Sbjct: 54  NSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNA 113

Query: 229 CGSR-TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
           C +   F T + A +    +  G Q H    K G   + +V  AL+ MYS+C  +E A  
Sbjct: 114 CPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQ 173

Query: 288 VFDEMSEKTT---VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           V D +  +       +N+++      G  EEA+++   M D  V  DH T+  ++ +C +
Sbjct: 174 VLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQ 233

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           +  L+   + HA L+R G   D    S L+D Y K G + +AR+VFD +  +NV+ W AL
Sbjct: 234 IRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTAL 293

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           +  Y  +G  EE++ LF  M   G  PN  TF  +L+AC+       G ++  +      
Sbjct: 294 MTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHG-DLLHARVEKLG 352

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
            K   +    +I +  + G +D ++ +     ++     W A++     +G   LGK A 
Sbjct: 353 FKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIIT-WNAMICGYSHHG---LGKQAL 408

Query: 525 EKLYGM-EPEKLSNYVVLLNI---YNSSGKLKEAAEVIRTLRRK 564
           +    M   E+  NYV  + +   Y+  G +KE    +  L R 
Sbjct: 409 QVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRN 452


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/548 (36%), Positives = 323/548 (58%), Gaps = 37/548 (6%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           AR LFD+MPER+L S N+++ G + + D   A  LF    E   +    ++  M+   A 
Sbjct: 14  ARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALF----ERMPERDIVSWNAMLSGYAQ 69

Query: 244 LELISVGKQL-HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ---------------- 286
              +   +++ +   LK G   N      L+  Y + G IEDA+                
Sbjct: 70  NGFVDEAREIFYKMPLKNGISWN-----GLLAAYVQNGRIEDAKRLFESKMDWTLVSWNC 124

Query: 287 ----------GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
                      +FD M ++ ++ W+ +IAGY+ +G SEEAL  + EM+    +++  +F+
Sbjct: 125 LMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFT 184

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
             +  C+ +A+LE  +Q H  LV+ G+       +AL+  Y K G I++AR  F ++L K
Sbjct: 185 CALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEK 244

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           +V+SWN +I GY  HG GEEA+ +FE M   G+RP+  T ++VL+ACS +GL ++G E F
Sbjct: 245 DVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYF 304

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
            SM+RD+ I  + +HY CM++LLGR G L+EA  L++  PF+     W ALL A R++GN
Sbjct: 305 YSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGN 364

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
            ELG+ AA+ ++ MEP     Y++L  +Y +SG+  +A ++   +R KG++ +P  SW+E
Sbjct: 365 TELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLE 424

Query: 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYH 635
           V+ + H F  GD SH  T +IY  ++ M L++ + GY+     +  DV+E+E+  +L YH
Sbjct: 425 VQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYH 484

Query: 636 SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
           SEKLAVA+G++      P++++++ R+C DCHNAIK I+ + GR I++RD  RFH+F+ G
Sbjct: 485 SEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGG 544

Query: 696 MCSCGDYW 703
            CSC D+W
Sbjct: 545 SCSCRDFW 552



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 163/318 (51%), Gaps = 19/318 (5%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA E+F  +  + G      +++ L++A +    I + KR+F   +      D  + +  
Sbjct: 75  EAREIFYKMPLKNGI-----SWNGLLAAYVQNGRIEDAKRLFESKM------DWTLVSWN 123

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
            LM    G +   R LFD MP+R+ +S + +IAG   +G   EA   F+++  +      
Sbjct: 124 CLM---GGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNR 180

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            +F   +   + +  + +G+QLH   +K G+    +V  AL+ MY KCGSI++A+  F E
Sbjct: 181 SSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQE 240

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           + EK  V WNT+I GYA HG+ EEAL ++  M+ +G++ D  T   ++  C+    ++  
Sbjct: 241 ILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQG 300

Query: 352 KQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAG-- 407
            +    + R +G    +V  + +VD   + G++E+A+++   M    +  +W AL+    
Sbjct: 301 SEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASR 360

Query: 408 -YGNHGRGEEAVELFEQM 424
            +GN   GE+A ++  +M
Sbjct: 361 IHGNTELGEKAAQIIFEM 378



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 152/353 (43%), Gaps = 73/353 (20%)

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
           +I  Y +    + A+ +FD+M E+    WN ++ GY  +   + A  L+  M +     D
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPER----D 56

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGL-VRHGFGLDIVANSALVDFYSKWGRIEDA---- 386
             +++ ++    +   ++ A++    + +++G     ++ + L+  Y + GRIEDA    
Sbjct: 57  IVSWNAMLSGYAQNGFVDEAREIFYKMPLKNG-----ISWNGLLAAYVQNGRIEDAKRLF 111

Query: 387 ----------------------RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
                                 R++FD M  ++ ISW+A+IAGY  +G  EEA+  F +M
Sbjct: 112 ESKMDWTLVSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVEM 171

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSE---------------RGWEIFQSM---------- 459
             +  R N  +F   LS CS     E                GW +  ++          
Sbjct: 172 QRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSI 231

Query: 460 --SRD---HKIKPRAMHYACMIELLGREGLLDEA---FALIRGAPFKTTKNMWAALLTAC 511
             +RD     ++   + +  MI    R G  +EA   F L++    +       ++L AC
Sbjct: 232 DEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAAC 291

Query: 512 RVNGNLELGK---FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
              G ++ G    ++  + YG+   KL +Y  ++++   +G+L+EA  +++ +
Sbjct: 292 SHAGLVDQGSEYFYSMNRDYGITA-KLVHYTCMVDLLGRAGQLEEAQNLMKNM 343



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 35/227 (15%)

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           ++  Y +  + + AR +FDKM  +++ SWN ++ GY  +   + A  LFE+M    +   
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDI--- 57

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            V++ A+LS  +++G  +   EIF  M   + I                 GLL    A +
Sbjct: 58  -VSWNAMLSGYAQNGFVDEAREIFYKMPLKNGIS--------------WNGLLA---AYV 99

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK--LYGMEPEKLS-NYVVLLNIYNSSG 549
           +    +  K ++ + +    V+ N  +G F  ++  L+   P++ S ++  ++  Y+ +G
Sbjct: 100 QNGRIEDAKRLFESKMDWTLVSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNG 159

Query: 550 KLKEAAEVIRTLRRKGLRM--------LPACSWI---EVKKQPHVFL 585
             +EA      ++R   R+        L  CS I   E+ +Q H  L
Sbjct: 160 CSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRL 206


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 231/705 (32%), Positives = 369/705 (52%), Gaps = 76/705 (10%)

Query: 73  NKIYTEELKESSLPDTQM---KKPSAGICSQIEKLV-LNK--RYREALELFEILEFEGGF 126
           N + +   K   LPD  +   + P     S    +V LN+  R+ +A++ F  +  EG F
Sbjct: 285 NSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEG-F 343

Query: 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR- 185
                T   ++S+C  + +    ++V  +++  G    + + N VL M+ +CG    AR 
Sbjct: 344 APSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARA 403

Query: 186 ------------------------------RLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
                                          +F+ M ER++VS N IIAG   +G    A
Sbjct: 404 VFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMA 463

Query: 216 FLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
              F  +    S +  + T  +++ A A L ++ +GKQ+HS  L+ G   +  +  ALI 
Sbjct: 464 LKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALIS 523

Query: 275 MYSKCGSIE---------------------------------DAQGVFDEMSEKTTVGWN 301
            Y+K GS+E                                  A+ +FD M+ +  + W 
Sbjct: 524 TYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWT 583

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
            +I GY  +G ++EA++L+  M   G + +  T + ++  C  LA L++ KQ H   +R 
Sbjct: 584 AMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRS 643

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEAVE 419
                +  ++A++  Y++ G +  AR VFD+ +C  K  I+W ++I     HG GE+AV 
Sbjct: 644 LQEQSVSVSNAIITVYARSGSVPLARRVFDQ-ICWRKETITWTSMIVAMAQHGLGEQAVV 702

Query: 420 LFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479
           LFE+M+  G++P+H+T++ VLSAC+ +G  ++G   ++ M  +H I P+  HYACM++L 
Sbjct: 703 LFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLH 762

Query: 480 GREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYV 539
            R GLL EA   I+  P      +W +LL ACRV  N +L + AA KL  ++P     Y 
Sbjct: 763 ARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYS 822

Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYR 599
            L N+Y++ G+  +AA + +  + KG++     SW  V+ + HVF + D  H Q   IYR
Sbjct: 823 ALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYR 882

Query: 600 KVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQ 658
           K   M  EI K G+VP+  ++L DVD++ ++ +LS HSEKLA+AFGLI+T + T L+I++
Sbjct: 883 KAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMK 942

Query: 659 SHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + R+C DCH AIK I+    REI+VRDA+RFHHF+DG CSC DYW
Sbjct: 943 NLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 143/306 (46%), Gaps = 14/306 (4%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           N F   +L+ +Y+K G + DA  VF EM ++  V W  +I G    G   +A+  + +M 
Sbjct: 280 NAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMV 339

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI-VANSALVDFYSKWGRI 383
             G     FT + ++  C  + +    ++ H  +V+ G    + VANS L   Y K G  
Sbjct: 340 SEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLY-MYGKCGDA 398

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           E AR VF++M  ++V SWN +++ Y + GR E AV +FE M+   +    V++  +++  
Sbjct: 399 ETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSI----VSWNTIIAGY 454

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHY-----ACMIELLGREGLLDEAFALIRGAPFK 498
           +++GL     + F  M     ++P A        AC    + + G    ++ L  G P  
Sbjct: 455 NQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMP-- 512

Query: 499 TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVI 558
            +  +  AL++    +G++E  +   ++    +   +S +  LL  Y   G  K+A E+ 
Sbjct: 513 CSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVIS-FTALLEGYVKLGDTKQAREIF 571

Query: 559 RTLRRK 564
             +  +
Sbjct: 572 DIMNNR 577


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 338/577 (58%), Gaps = 9/577 (1%)

Query: 136 LISACIGL-----RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV--RCGMMIDARRLF 188
           ++  CI L      S  ++K++ ++ +  G  P     N+ L+  +      M  A ++F
Sbjct: 33  ILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIF 92

Query: 189 DEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC-GSRTFATMIRASAGLELI 247
           +++   N+ + N +I G  +S +   A  LF  +    S    + TF  + +A A L  +
Sbjct: 93  NQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDV 152

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           S+G+ +HS  ++ GF    FV  +L+ MYS  G  E A  VF+ MS +  V WN++I G+
Sbjct: 153 SLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGF 212

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           AL+G   EAL LY EM   GV+ D FT   ++  C  L +L   ++ H  +V+ G   + 
Sbjct: 213 ALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQ 272

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
            A++AL+D YSK G   DA+ VFD+M  ++V+SW +LI G   +G G EA++LF ++   
Sbjct: 273 HASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQ 332

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G++P+ +TF+ VL ACS  G+ + G+  F+ M  ++ I PR  H+ CM++LL R G + +
Sbjct: 333 GLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGD 392

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A+  IR  P      +W  LL AC ++G+LELG+ A  ++  +E     ++V+L N+Y S
Sbjct: 393 AYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYAS 452

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
             +  +   V + +  KG++  P  S +E+K + + F+ GD+SH Q++E Y  + ++   
Sbjct: 453 ERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQL 512

Query: 608 ISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
           +   GYVP    +L D++E+E+   LS+H+EK+A+AF L+NT   TP++I+++ R+C DC
Sbjct: 513 LKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADC 572

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           H AIKLI+ V  REI+VRD SRFHHFKDG CSC DYW
Sbjct: 573 HLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/410 (26%), Positives = 184/410 (44%), Gaps = 20/410 (4%)

Query: 17  QNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECCLMEQGLKPR-PKPNKI 75
           QN      SF   K +   SL+  C  S  K K   +F       +  G+ P+ P  NK 
Sbjct: 23  QNFLDCHLSFILRKCI---SLVQLCGSSQSKLKQIHAFS------IRHGVPPQNPDFNKH 73

Query: 76  YTEELKESSLPDT-------QMKKPSAGI-CSQIEKLVLNKRYREALELFEILEFEGGFD 127
               L   S P +       Q++ P+     + I     ++    A+ELF  +       
Sbjct: 74  LIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSIL 133

Query: 128 VGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL 187
             + T+  L  A   L  +   + + S ++  GF+   +++N ++ M+   G    A ++
Sbjct: 134 PDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQV 193

Query: 188 FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI 247
           F+ M  R+ V+ N +I G   +G   EA  L+ ++  E  +    T  +++ A   L  +
Sbjct: 194 FEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGAL 253

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           ++G+++H   +K+G   N   S AL+D+YSKCG+  DAQ VFDEM E++ V W ++I G 
Sbjct: 254 ALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGL 313

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV-RHGFGLD 366
           A++G   EAL L+ E+   G+K    TF  ++  C+    L+        +   +G    
Sbjct: 314 AVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPR 373

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGE 415
           I  +  +VD   + G++ DA      M +  N + W  L+     HG  E
Sbjct: 374 IEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLE 423


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/595 (34%), Positives = 339/595 (56%), Gaps = 38/595 (6%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +E+LELF+ ++ EG F+    T  ++++A   L  +R  K++   ++   F  ++++ N 
Sbjct: 137 QESLELFKRMQREG-FEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNA 195

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           +  M+ +CG +  AR LFD + ++NLVS N++I+G   +G   +   L            
Sbjct: 196 LTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGL------------ 243

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
                                 LH   L     D V +S  +I  Y +CG +++A+ VF 
Sbjct: 244 ----------------------LHQMRLSGHMPDQVTMS-TIIAAYCQCGRVDEARRVFS 280

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           E  EK  V W  ++ GYA +G  E+AL L+ EM    ++ D +T S ++  C +LASL H
Sbjct: 281 EFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHH 340

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            +  H   +  G   +++ +SAL+D YSK G I+DAR VF+ M  +NV+SWNA+I G   
Sbjct: 341 GQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQ 400

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           +G  ++A+ELFE ML    +P++VTF+ +LSAC      E+G E F S++  H + P   
Sbjct: 401 NGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLD 460

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HYACM+ LLGR G +++A ALI+         +W+ LL+ C   G++   + AA  L+ +
Sbjct: 461 HYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFEL 520

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           +P     Y++L N+Y S G+ K+ A V   ++ K ++     SWIE+  + H F S D++
Sbjct: 521 DPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRT 580

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTS 649
           H ++++IY K++ ++ ++ + G+ P    +L DV E E+ + + +HSEKLA+AFGLI   
Sbjct: 581 HPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKP 640

Query: 650 D-WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +  +P++I+++ RIC DCH  +K  + + GR+I++RD++RFHHF  G CSC D W
Sbjct: 641 NGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 132/509 (25%), Positives = 228/509 (44%), Gaps = 122/509 (23%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEP-DLYMRNRVLLMHVRCGMMIDARRLF 188
           S  Y  L+  C+    I + KR+ S+M    F+P D ++ N++L ++ + G + DA+ LF
Sbjct: 22  SEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLF 81

Query: 189 DEM-------------------------------PERNLVSCNMIIAGMIDSGDYLEAFL 217
           D+M                               P R+ VS N  IAG   +    E+  
Sbjct: 82  DKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLE 141

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           LF  +  E  +    T  +++ ASA L  +  GKQ+H   +   F  NVF+  AL DMY+
Sbjct: 142 LFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYA 201

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           KCG IE A+ +FD +++K  V WN +I+GYA +G  E+ + L ++MR SG   D  T S 
Sbjct: 202 KCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMST 261

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           II                                     Y + GR+++AR VF +   K+
Sbjct: 262 IIAA-----------------------------------YCQCGRVDEARRVFSEFKEKD 286

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR-----SGLSERG 452
           ++ W A++ GY  +GR E+A+ LF +MLL  + P+  T  +V+S+C++      G +  G
Sbjct: 287 IVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHG 346

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM--WAALLTA 510
             I   ++ +  +       + +I++  + G +D+A ++    P   T+N+  W A++  
Sbjct: 347 KSILAGLNNNLLVS------SALIDMYSKCGFIDDARSVFNLMP---TRNVVSWNAMIVG 397

Query: 511 CRVNG----------NLELGKFAAEKL----------------------------YGMEP 532
           C  NG          N+   KF  + +                            +GM P
Sbjct: 398 CAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTP 457

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
             L +Y  ++N+   +G++++A  +I+ +
Sbjct: 458 -TLDHYACMVNLLGRTGRIEQAVALIKNM 485


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/579 (35%), Positives = 340/579 (58%), Gaps = 7/579 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T++ LI++CI   S+ +   V   ++ +G + D Y+  +++ M+   G +  A ++FDE 
Sbjct: 76  TFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDET 135

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL----I 247
            E+ +   N I   +  +    +  +L+  +          T+  +++A    EL    +
Sbjct: 136 REKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPL 195

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
             GK++H+  L+ G+  +V V   L+D+Y++ G +  A  VF  M +K  V W+ +IA Y
Sbjct: 196 RKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACY 255

Query: 308 ALHGYSEEALDLYYEMRDSGVKM--DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
           A +    +AL+L+  M         +  T   +++ C  LA+LEH K  HA ++R G   
Sbjct: 256 AKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDS 315

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
            +   + L+  Y + G I   + VFD M  ++VISWN+LI+ YG HG G++A+++FE M+
Sbjct: 316 TLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMI 375

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
             G+ P+++TF+ VL ACS +GL E    +F+SM   ++I PR  HYACM+++LGR   L
Sbjct: 376 NRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRL 435

Query: 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
           DEA  LI+   FK    +W +LL +CR++ N+EL + A+  L+ +EP+   NYV+L +IY
Sbjct: 436 DEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERASAMLFELEPKNAGNYVLLSHIY 495

Query: 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM 605
             S    +   V + L  +GL+ +P+CSWIEVK++ +  +S ++ + Q +E+   +  ++
Sbjct: 496 AKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLL 555

Query: 606 LEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICC 664
            EI   GYVP+   +  D+DE+E +R++  HS KLAVAFGLINTS    ++I  + R+C 
Sbjct: 556 TEIKNQGYVPQTNVVTYDLDEEEKERIVLGHSGKLAVAFGLINTSKGEIIRISNNLRLCE 615

Query: 665 DCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           DCH  +K ++  T REI++RD +RFH FKDG+CSCGDYW
Sbjct: 616 DCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCSCGDYW 654


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/621 (34%), Positives = 349/621 (56%), Gaps = 52/621 (8%)

Query: 90  MKKPSAGICSQIEKLVL--NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
           ++KP+  + + + K+ +  N+ ++  L  +E++     F     TY A++ AC     + 
Sbjct: 97  VRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAH--FRPNKYTYPAVLKACSDAGVVA 154

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP-ERNLVSCNMIIAGM 206
           E  +V ++++  G   D ++ +  + M+   G +++ARR+ D+   E + V  N +I G 
Sbjct: 155 EGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGY 214

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
           +  G+   A  LF                                         G  D  
Sbjct: 215 LRFGEVEAARELF----------------------------------------EGMPDRS 234

Query: 267 FVSC--ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
            +S   A+I  +S+CG +E A+  FDEM E+  + W+ +I GY   G   EAL+++++M+
Sbjct: 235 MISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQ 294

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
              ++   F    ++  C  L +L+  +  H    R+   LD V  ++LVD Y+K GRI+
Sbjct: 295 KEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRID 354

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            A  VF+KM  K V SWNA+I G   HGR E+A++LF +M +N   PN +TF+ VL+AC+
Sbjct: 355 LAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIN---PNEITFVGVLNACA 411

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
             GL ++G  IF SM +++ ++P+  HY C+++LLGR GLL EA  ++   P + T  +W
Sbjct: 412 HGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVW 471

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
            ALL ACR +GN+ELG+   + L  +EP+    Y +L NIY  +G+ +E  EV + ++ +
Sbjct: 472 GALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKER 531

Query: 565 GLRMLPACSWIEV-KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
           G++  P  S I++ + + H F+ GD SH Q K+IY+ +D++   +   GY P+   +L D
Sbjct: 532 GIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFD 591

Query: 624 VDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           +DE+E+    + HSEKLA+ FGLINTS  T ++IV++ R+C DCH+A KLI+ V  REI+
Sbjct: 592 IDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREII 651

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           VRD  R+HHF++G CSC D+W
Sbjct: 652 VRDRIRYHHFRNGACSCKDFW 672



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 153/326 (46%), Gaps = 22/326 (6%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCG-----SIEDAQGVFDEMSEKTTVGWNTIIA 305
           KQ H+  L+ G   + +++ +L+  Y+        S E +  VFD + +     WN +I 
Sbjct: 51  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 110

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
               +    +A+ LYYEM  +  + + +T+  +++ C+    +    Q HA LV+HG G 
Sbjct: 111 VCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGG 170

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQM 424
           D    S+ +  Y+ +GR+ +AR + D    + + + WNA+I GY   G  E A ELFE M
Sbjct: 171 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 230

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
               M     T+ A++S  SR G+ E   E F  M    +I      ++ MI+   +EG 
Sbjct: 231 PDRSMIS---TWNAMISGFSRCGMVEVAREFFDEMKERDEIS-----WSAMIDGYIQEGC 282

Query: 485 LDEA---FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV- 540
             EA   F  ++    +  K +  ++L+AC   G L+ G++     Y        + V+ 
Sbjct: 283 FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWI--HTYAKRNSIQLDGVLG 340

Query: 541 --LLNIYNSSGKLKEAAEVIRTLRRK 564
             L+++Y   G++  A EV   +  K
Sbjct: 341 TSLVDMYAKCGRIDLAWEVFEKMSNK 366


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/595 (34%), Positives = 339/595 (56%), Gaps = 38/595 (6%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +E+LELF+ ++ EG F+    T  ++++A   L  +R  K++   ++   F  ++++ N 
Sbjct: 137 QESLELFKRMQREG-FEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNA 195

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           +  M+ +CG +  AR LFD + ++NLVS N++I+G   +G   +   L            
Sbjct: 196 LTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGL------------ 243

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
                                 LH   L     D V +S  +I  Y +CG +++A+ VF 
Sbjct: 244 ----------------------LHQMRLSGHMPDQVTMS-TIIAAYCQCGRVDEARRVFS 280

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           E  EK  V W  ++ GYA +G  E+AL L+ EM    ++ D +T S ++  C +LASL H
Sbjct: 281 EFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHH 340

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            +  H   +  G   +++ +SAL+D YSK G I+DAR VF+ M  +NV+SWNA+I G   
Sbjct: 341 GQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQ 400

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           +G  ++A+ELFE ML    +P++VTF+ +LSAC      E+G E F S+S  H + P   
Sbjct: 401 NGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLD 460

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HYACM+ LLGR G +++A ALI+         +W+ LL+ C   G++   + AA  L+ +
Sbjct: 461 HYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFEL 520

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           +P     Y++L N+Y S G+ K+ A V   ++ K ++     SWIE+  + H F S D++
Sbjct: 521 DPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRT 580

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTS 649
           H ++++IY K++ ++ ++ + G+ P    +L DV E E+ + + +HSEKLA+AFGLI   
Sbjct: 581 HPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKP 640

Query: 650 D-WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +  +P++I+++ RIC DCH  +K  + + GR+I++RD++RFHHF  G CSC D W
Sbjct: 641 NGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 132/509 (25%), Positives = 228/509 (44%), Gaps = 122/509 (23%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEP-DLYMRNRVLLMHVRCGMMIDARRLF 188
           S  Y  L+  C+    I + KR+ S+M    F+P D ++ N++L ++ + G + DA+ LF
Sbjct: 22  SEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLF 81

Query: 189 DEM-------------------------------PERNLVSCNMIIAGMIDSGDYLEAFL 217
           D+M                               P R+ VS N  IAG   +    E+  
Sbjct: 82  DKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLE 141

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           LF  +  E  +    T  +++ ASA L  +  GKQ+H   +   F  NVF+  AL DMY+
Sbjct: 142 LFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYA 201

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           KCG IE A+ +FD +++K  V WN +I+GYA +G  E+ + L ++MR SG   D  T S 
Sbjct: 202 KCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMST 261

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           II                                     Y + GR+++AR VF +   K+
Sbjct: 262 IIAA-----------------------------------YCQCGRVDEARRVFSEFKEKD 286

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR-----SGLSERG 452
           ++ W A++ GY  +GR E+A+ LF +MLL  + P+  T  +V+S+C++      G +  G
Sbjct: 287 IVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQAVHG 346

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM--WAALLTA 510
             I   ++ +  +       + +I++  + G +D+A ++    P   T+N+  W A++  
Sbjct: 347 KSILAGLNNNLLVS------SALIDMYSKCGFIDDARSVFNLMP---TRNVVSWNAMIVG 397

Query: 511 CRVNG----------NLELGKFAAEKL----------------------------YGMEP 532
           C  NG          N+   KF  + +                            +GM P
Sbjct: 398 CAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTP 457

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
             L +Y  ++N+   +G++++A  +I+ +
Sbjct: 458 -TLDHYACMVNLLGRTGRIEQAVALIKNM 485



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/296 (23%), Positives = 124/296 (41%), Gaps = 43/296 (14%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N R  +AL LF  +  E   +  S T  +++S+C  L S+   + V    +  G   +L 
Sbjct: 300 NGREEDALLLFNEMLLEH-IEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLL 358

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + + ++ M+ +CG + DAR +F+ MP RN+VS N +I G   +G   +A  LF ++ ++ 
Sbjct: 359 VSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQK 418

Query: 227 SDCGSRTFATMIRASAGLELISVGKQ-LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
               + TF  ++ A      I  G++   S + + G    +     ++++  + G IE A
Sbjct: 419 FKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQA 478

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
             +   M+                                     D   +S ++ IC+  
Sbjct: 479 VALIKNMAHDP----------------------------------DFLIWSTLLSICSTK 504

Query: 346 ASLEHAKQAHAGLVRHGFGLD---IVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
             + +A+ A     RH F LD    V    L + Y+  GR +D   V + M  KNV
Sbjct: 505 GDIVNAEVA----ARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNV 556



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 58/268 (21%), Positives = 119/268 (44%), Gaps = 41/268 (15%)

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGF-GLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           ++ ++  C R   +  AK+  + +  H F   D   ++ L+  Y+K+G++ DA+++FDKM
Sbjct: 25  YTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLHLYAKFGKLRDAQNLFDKM 84

Query: 394 LCKNVISWNALIAGYGNHGR-------------------------------GEEAVELFE 422
           L ++  SWNAL++ Y   G                                 +E++ELF+
Sbjct: 85  LKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFK 144

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           +M   G  P   T +++L+A ++      G +I  S+   + +      +  + ++  + 
Sbjct: 145 RMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLG-NVFIWNALTDMYAKC 203

Query: 483 GLLDEAFALIRGAPFKTTKNM--WAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNY 538
           G +++A  L       T KN+  W  +++    NG  E  +G     +L G  P++++  
Sbjct: 204 GEIEQARWLFDCL---TKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVT-M 259

Query: 539 VVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
             ++  Y   G++ EA  V    + K +
Sbjct: 260 STIIAAYCQCGRVDEARRVFSEFKEKDI 287


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/565 (36%), Positives = 337/565 (59%), Gaps = 10/565 (1%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           RS+R+  ++ +++L  G +    + + ++ ++ +  + + + ++FDE P+++  + + +I
Sbjct: 39  RSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVI 98

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRT----FATMIRASAGLELISVGKQLHSCALK 259
           +    +    EA LL L  +    + G R     + +  +A   L    VGK +H  A+K
Sbjct: 99  SAFAQN----EAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVK 154

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDL 319
            G+  +VFV  +L+DMY+KCG I DA+ +FDEM E+  V W+ +I GYA      EAL L
Sbjct: 155 TGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTL 214

Query: 320 YYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379
           + +     V ++ FTFS +IR+C+    LE  K  H   ++  F       SAL+  YSK
Sbjct: 215 FKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSK 274

Query: 380 WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
            G IE A  VFD++  +N+  WN+++     H   +    LFE+M   GM+PN ++FL+V
Sbjct: 275 CGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSV 334

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499
           L ACS +GL E+G E F S+ RD+ I+P   HYA +++LLGR G L EA ++I+  P + 
Sbjct: 335 LYACSHAGLVEKGREYF-SLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRP 393

Query: 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
           T+++W ALLT CR++ + E+  F A+++  M+      +V+L N Y ++G+ +EAA + +
Sbjct: 394 TESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRK 453

Query: 560 TLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKT 619
            LR +G++     SW+E   + H F +GD+SH +  EIY K++ +  E+ K GYV +   
Sbjct: 454 MLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSF 513

Query: 620 LLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTG 678
           +L  VD E++   + YHSE+LA+AFGLI      P++++++ R+C DCH AIK ++   G
Sbjct: 514 VLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCG 573

Query: 679 REIVVRDASRFHHFKDGMCSCGDYW 703
           R ++VRD +RFH F+DG CSCGDYW
Sbjct: 574 RVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 187/391 (47%), Gaps = 9/391 (2%)

Query: 43  FSLDKRKWKRSFQRVECCLMEQGLKPRPKPNKIYTEELKESSLP-------DTQMKKPSA 95
            S  + +  R   ++   +++ GL+  P  +        ++ LP       D   KK S 
Sbjct: 33  LSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSST 92

Query: 96  GICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSY 155
              S I     N+    AL+ F  +    G       Y +   AC  LR     K V   
Sbjct: 93  TWSSVISAFAQNEAPLLALQFFRRM-LNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCL 151

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
            + TG+  D+++ + ++ M+ +CG + DAR LFDEMPERN+VS + +I G     D +EA
Sbjct: 152 AVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEA 211

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
             LF     E  D    TF+++IR  +    + +GK +H   LKM F  + FV  ALI +
Sbjct: 212 LTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISL 271

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           YSKCG IE A  VFDE+  +    WN+++   A H +++    L+ EM + G+K +  +F
Sbjct: 272 YSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISF 331

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
             ++  C+    +E  ++  + +  +G   +    ++LVD   + G++++A  V  +M  
Sbjct: 332 LSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPM 391

Query: 396 KNVIS-WNALIAGYGNHGRGEEAVELFEQML 425
           +   S W AL+ G   H   E A  + +++L
Sbjct: 392 RPTESVWGALLTGCRIHKDTEMAAFVADRIL 422



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 52/101 (51%)

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
           TR  SL    Q HA +++ G     + +  L++ YSK      +  VFD+   K+  +W+
Sbjct: 36  TRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWS 95

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           ++I+ +  +     A++ F +ML +G+RP+   + +   AC
Sbjct: 96  SVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKAC 136


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/560 (35%), Positives = 331/560 (59%), Gaps = 2/560 (0%)

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
           + E K V+  + S   E D+ + N  + M    G++ DARRLF++M +R++V+ N++I  
Sbjct: 222 LSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITL 281

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
            + + ++ EA  LF  L ++       TF  M+     L  ++ GK +H    + G+  +
Sbjct: 282 YVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRD 341

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
             V+ AL+ +Y +C +   A  +F +M  K  + W  +   YA +G+ +EAL L+ EM+ 
Sbjct: 342 AVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQL 401

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
            G +    T   ++  C  LA+L+  +Q H+ ++ + F +++V  +AL++ Y K G++ +
Sbjct: 402 EGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAE 461

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           A  VF+KM  ++++ WN+++  Y  HG  +E ++LF QM L+G++ + V+F++VLSA S 
Sbjct: 462 AMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSH 521

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI-RGAPFKTTKNMW 504
           SG    G++ F +M +D  I P    Y C+++LLGR G + EA  ++ + +       +W
Sbjct: 522 SGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILW 581

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
             LL ACR +   +  K AAE++   +P     YVVL N+Y ++G       + + +R +
Sbjct: 582 MTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSR 641

Query: 565 GLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV 624
           G++  P  S IE+  + H FL GD+SH +   IY ++D +  E+   GY+P+ K +L DV
Sbjct: 642 GVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDV 701

Query: 625 -DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVV 683
            DE+++ +L YHSE+LA+AFGLI+T   TPL+++++ R+C DCH A K I+ + GREI+V
Sbjct: 702 EDERKEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILV 761

Query: 684 RDASRFHHFKDGMCSCGDYW 703
           RD  RFH+FKDG CSC DYW
Sbjct: 762 RDTHRFHNFKDGRCSCKDYW 781



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/451 (25%), Positives = 218/451 (48%), Gaps = 10/451 (2%)

Query: 110 YREALELFEILEFEGGFDVGSS--TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
           Y  AL +F  ++ E   DV  +  TY A+++AC    S+++   +   +L  GFE D+++
Sbjct: 86  YDRALGMFYQMQEE---DVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFV 142

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
              ++ M+ +CG +  A   F  +  R++VS   +IA  +    +  A  L+  +  +  
Sbjct: 143 GTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGV 202

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
                T  T+  A      +S GK ++          +V V  + ++M+   G + DA+ 
Sbjct: 203 VPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARR 262

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           +F++M ++  V WN +I  Y  +    EA+ L+  ++  GVK +  TF +++ + T L S
Sbjct: 263 LFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTS 322

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           L   K  H  +   G+  D V  +AL+  Y +      A  +F  M  K+VI+W  +   
Sbjct: 323 LAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVA 382

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           Y  +G  +EA++LF++M L G RP   T +AVL  C+     ++G +I  S   +++ + 
Sbjct: 383 YAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQI-HSHIIENRFRM 441

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAE 525
             +    +I + G+ G + EA ++      K    +W ++L A   +G  +  L  F   
Sbjct: 442 EMVVETALINMYGKCGKMAEAMSVFEKMA-KRDILVWNSMLGAYAQHGYYDETLQLFNQM 500

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
           +L G++ + +S +V +L+  + SG + +  +
Sbjct: 501 QLDGVKADAVS-FVSVLSALSHSGSVTDGYQ 530



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 204/480 (42%), Gaps = 52/480 (10%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           ++ + AL+  C   +++   +RV  ++   GFE +  +   ++ M+ +CG + +A+++F+
Sbjct: 4   TAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFE 63

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
            +  +++ +   +I      GDY  A  +F  + EE       T+  ++ A A  E +  
Sbjct: 64  ILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKD 123

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G ++H   L+ GF  +VFV  ALI+MY+KCGS+  A   F  +  +  V W  +IA    
Sbjct: 124 GMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQ 183

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG-FGLDIV 368
           H     A  LY  M+  GV  +  T   +         L   K  + GLV  G    D+ 
Sbjct: 184 HDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVY-GLVSSGVMESDVR 242

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             ++ V+ +   G + DAR +F+ M+ ++V++WN +I  Y  +    EAV LF ++  +G
Sbjct: 243 VMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDG 302

Query: 429 MRPNHVTFL-----------------------------------AVLSACSRSGLSERGW 453
           ++ N +TF+                                   A++S   R     + W
Sbjct: 303 VKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAW 362

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF---KTTKNMWAALLTA 510
           +IF  M     I      +  M     + G   EA  L +       + T     A+L  
Sbjct: 363 KIFVDMGSKDVIT-----WTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDT 417

Query: 511 CRVNGNLELGK----FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           C     L+ G+       E  + ME   +     L+N+Y   GK+ EA  V   + ++ +
Sbjct: 418 CAHLAALQKGRQIHSHIIENRFRME---MVVETALINMYGKCGKMAEAMSVFEKMAKRDI 474



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 179/385 (46%), Gaps = 10/385 (2%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   V N+ + EA+ LF  L+ + G      T+  +++    L S+ + K +   +   G
Sbjct: 279 ITLYVQNENFGEAVRLFGRLQ-QDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAG 337

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           ++ D  +   ++ ++ RC     A ++F +M  +++++  ++      +G   EA  LF 
Sbjct: 338 YDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQ 397

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           ++  E     S T   ++   A L  +  G+Q+HS  ++  F   + V  ALI+MY KCG
Sbjct: 398 EMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCG 457

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            + +A  VF++M+++  + WN+++  YA HGY +E L L+ +M+  GVK D  +F  ++ 
Sbjct: 458 KMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLS 517

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVAN--SALVDFYSKWGRIEDARHVFDKM--LCK 396
             +   S+    Q    +++  F +         +VD   + GRI++A  +  K+     
Sbjct: 518 ALSHSGSVTDGYQYFVAMLQD-FSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLP 576

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           + I W  L+     H + ++A    EQ+L     P+H     VLS    +     G    
Sbjct: 577 DGILWMTLLGACRTHNKTDQAKAAAEQVLERD--PSHSGAYVVLSNVYAAAGDWDGVNRM 634

Query: 457 QSMSRDHKIKPRAMHYACMIELLGR 481
           + + R   +K      +  IE+L R
Sbjct: 635 RKLMRSRGVKKEPGRSS--IEILNR 657



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 106/228 (46%), Gaps = 5/228 (2%)

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
           K D   F  +++ C+   +++H ++ H  +   GF  + +    L+  Y++ G + +A+ 
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQ 60

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           VF+ +  K+V +W  +I  Y   G  + A+ +F QM    + P  VT++A+L+AC+ +  
Sbjct: 61  VFEILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTES 120

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
            + G EI   + +    +        +I +  + G +  A+   +    +   + W A++
Sbjct: 121 LKDGMEIHGQILQ-QGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVS-WTAMI 178

Query: 509 TACRVNGNLELGKFAAEK--LYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            AC  +    L ++   +  L G+ P K++ Y V  N Y     L E 
Sbjct: 179 AACVQHDQFALARWLYRRMQLDGVVPNKITLYTV-FNAYGDPNYLSEG 225


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/602 (35%), Positives = 345/602 (57%), Gaps = 24/602 (3%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML-STGFEP 163
           V +K + EAL L   ++F G   +      +LI+    L  ++  + V  Y++ + G E 
Sbjct: 165 VRSKAFGEALRLVREMQFVG-VKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEK 223

Query: 164 -DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL 222
            ++ M   ++ M+ + G +  A+RLFD + +R++VS  ++IAG I S    E    F  +
Sbjct: 224 MEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRM 283

Query: 223 WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
            EE       T  ++I     +  + +GK  H+  L+ GFG ++ +  ALIDMY KCG +
Sbjct: 284 LEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQV 343

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
             A+ +F+ + +K    W+ +I+ YA     ++  +L+ EM ++ VK ++ T   ++ +C
Sbjct: 344 GYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLC 403

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
               +L+  K  HA + RHG  +D++  +AL++ Y+K G +  AR +F++ + +++  WN
Sbjct: 404 AEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWN 463

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
            ++AG+  HG G+EA+ELF +M  +G+ PN +TF+++  ACS SGL E            
Sbjct: 464 TMMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGLME------------ 511

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
                   HY C+++LLGR G LDEA  +I   P +    +W ALL AC+++ NL LG+ 
Sbjct: 512 --------HYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEV 563

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPH 582
           AA K+  ++P+     V+  NIY S+ +  +   V   +   G++  P  SWIEV    H
Sbjct: 564 AARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVH 623

Query: 583 VFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAV 641
            F SGD++  QT ++Y  V  M +++ + GY P    +L ++DE+E +  LSYHSEKLA 
Sbjct: 624 HFKSGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKLAT 683

Query: 642 AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
           AFGLI+T+  TP++IV++ RIC DCH A KL++ + GR I+VRD +RFHHF +G CSC  
Sbjct: 684 AFGLISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCMG 743

Query: 702 YW 703
           YW
Sbjct: 744 YW 745



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 192/425 (45%), Gaps = 58/425 (13%)

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
           ++++A A      +G++LH  A K GF  +VFV  AL++MY KCG +  A+ VFD+M E+
Sbjct: 93  SLLKACAQASSGDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPER 152

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             V W T++  Y       EAL L  EM+  GVK+       +I +   L  ++  +  H
Sbjct: 153 DVVSWTTMLGCYVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVH 212

Query: 356 AGLVRH--GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
             +VR+     +++   +AL+D Y K G +  A+ +FD++  ++V+SW  +IAG     R
Sbjct: 213 GYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCR 272

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
            +E  + F +ML   + PN +T L++++ C   G  + G      + R+      A+  A
Sbjct: 273 LDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTA 332

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA----------------------- 510
            +I++ G+ G +  A AL  G   K  K +W+ L++A                       
Sbjct: 333 -LIDMYGKCGQVGYARALFNGVKKKDVK-IWSVLISAYAHVSCMDQVFNLFVEMLNNDVK 390

Query: 511 ------------CRVNGNLELGKFAAEKL--YGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
                       C   G L+LGK+    +  +G+E + +     L+N+Y   G +  A  
Sbjct: 391 PNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILE-TALINMYAKCGDVTIARS 449

Query: 557 VIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPE 616
           +     ++ +RM     W       +  ++G   H   KE       +  E+  HG  P 
Sbjct: 450 LFNEAMQRDIRM-----W-------NTMMAGFSMHGCGKEAL----ELFSEMESHGVEPN 493

Query: 617 EKTLL 621
           + T +
Sbjct: 494 DITFV 498



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 133/317 (41%), Gaps = 37/317 (11%)

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR-DSGVKMDHFTFSMIIRICTRLAS 347
           F +        +N +I+ Y  +   + + + Y  MR +    +D+F    +++ C + +S
Sbjct: 44  FSQSHFTPEANYNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASS 103

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
            +  ++ H    ++GF  D+   +AL++ Y K G +  AR VFD+M  ++V+SW  ++  
Sbjct: 104 GDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGC 163

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS-----RSGLSERGWEI------- 455
           Y       EA+ L  +M   G++ + V  +++++        +SG +  G+ +       
Sbjct: 164 YVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEK 223

Query: 456 ------------------FQSMSR--DHKIKPRAMHYACMIELLGREGLLDEA---FALI 492
                               S  R  D   K   + +  MI    R   LDE    F  +
Sbjct: 224 MEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRM 283

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGK-FAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
                   +    +L+T C   G L+LGK F A  L       L+    L+++Y   G++
Sbjct: 284 LEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQV 343

Query: 552 KEAAEVIRTLRRKGLRM 568
             A  +   +++K +++
Sbjct: 344 GYARALFNGVKKKDVKI 360


>gi|225459429|ref|XP_002284321.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Vitis vinifera]
          Length = 700

 Score =  387 bits (995), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/596 (35%), Positives = 328/596 (55%), Gaps = 28/596 (4%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           ++ ++ +I+A +    + +   +   M   G++PD+   N +L  H R G+   A  L  
Sbjct: 111 TAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAFELLS 170

Query: 190 EMPE----RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR------------T 233
           EM +     N+VS N++I+G   SG   EA  +F  +      C               T
Sbjct: 171 EMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPIT 230

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
               + A A L L   GK++H   L+ GF  N+FVS AL+DMY+KC  ++ A  VF  + 
Sbjct: 231 ITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRID 290

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
            + TV WN ++AGY  +   EEAL L+ EM   G++    TF ++   C  +A++   + 
Sbjct: 291 GRNTVSWNALMAGYIYNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRG 350

Query: 354 AHAGLVRHGFGLDIVAN---SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            H    +    LD + N   SAL+D Y+K G I DA+ VFD  + K+V  WNA+I+ +  
Sbjct: 351 LHGYAAK--CQLDELKNAIASALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSV 408

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           HG    A  +F QM L G+ P+H+TF+++LSAC+R GL E GW+ F SM   + +     
Sbjct: 409 HGMARNAFAVFVQMELLGILPDHITFVSLLSACARDGLVEEGWKYFNSMEISYGVAATLE 468

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HY CM+ +LG  GLLDEA   IR  P+     MWA LL ACRV+ N E+G+ AA+ L+ +
Sbjct: 469 HYTCMVGILGGAGLLDEALDFIRQMPYPPDACMWATLLQACRVHSNPEIGERAAKALFEL 528

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           EP+  +NY++L NIY SSG    A  +   +R + L  +  CS++ V      F  G+ S
Sbjct: 529 EPDNATNYMLLSNIYVSSGMWDFAKNLRSFMRGRKLLTIKECSYLTVGSHICTFKGGESS 588

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY---HSEKLAVAFGLIN 647
           H + +EI    D++  ++   GY P    L P  D++E+ +  +   H+EKLA+ FG+I+
Sbjct: 589 HPELEEILEAWDKLARKMELSGYFP----LDPVFDDEEKELDPFSCLHTEKLAICFGIIS 644

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++ + P+ + ++ R+C DCH + KLI+ + GREI V+D   +HH KDG+CSC D W
Sbjct: 645 SNTYRPVHVSKNIRMCIDCHTSAKLISKIDGREIFVKDVCFYHHMKDGICSCQDRW 700



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 132/514 (25%), Positives = 227/514 (44%), Gaps = 68/514 (13%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   V N    +AL++F  + +    D    T  +++ AC GL+++R  K + +  L  G
Sbjct: 17  ISGCVQNGYLEDALDMFSRMLWYPE-DPNIITIASILPACTGLKALRLGKAIHAIALKHG 75

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              ++Y+   V+ M+ +CG    A ++F +   +N    N +IA  ++ G   +A  L  
Sbjct: 76  IVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAAYVNEGKVEDALGLLR 135

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            + ++       T+ T++   A   L +   +L S  ++MG   NV     LI  + + G
Sbjct: 136 SMQKDGWKPDVITYNTILSGHARNGLKTQAFELLSEMVQMGLKPNVVSFNVLISGFQQSG 195

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
              +A  VF  M   +  G N             E L+L   MR + +     T +  + 
Sbjct: 196 LSYEALKVFRIMQSPSD-GCN-----------PNEVLNL--SMRPNPI-----TITGALP 236

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C  L      K+ H   +R+GF  +I  +SALVD Y+K   ++ A  VF ++  +N +S
Sbjct: 237 ACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVS 296

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS-----RSGLSERGW-- 453
           WNAL+AGY  + + EEA++LF +ML  G++P+ +TF+ +  AC      R G    G+  
Sbjct: 297 WNALMAGYIYNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAA 356

Query: 454 -----EIFQSMSR-------------------DHKIKPRAMHYACMIELLGREGLLDEAF 489
                E+  +++                    D +++     +  MI      G+   AF
Sbjct: 357 KCQLDELKNAIASALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAF 416

Query: 490 A------LIRGAPFKTTKNMWAALLTACRVNGNLELG-KF--AAEKLYGMEPEKLSNYVV 540
           A      L+   P   T   + +LL+AC  +G +E G K+  + E  YG+    L +Y  
Sbjct: 417 AVFVQMELLGILPDHIT---FVSLLSACARDGLVEEGWKYFNSMEISYGVA-ATLEHYTC 472

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
           ++ I   +G L EA + IR +         AC W
Sbjct: 473 MVGILGGAGLLDEALDFIRQMPYPP----DACMW 502



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 106/368 (28%), Positives = 163/368 (44%), Gaps = 59/368 (16%)

Query: 191 MPERNLV----SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           MPER L     S N II+G + +G   +A  +F  +     D    T A+++ A  GL+ 
Sbjct: 1   MPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKA 60

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           + +GK +H+ ALK G   NV+V  ++IDMYSKCGS + A+ VF +   K T  WN +IA 
Sbjct: 61  LRLGKAIHAIALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAA 120

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           Y   G  E+AL L   M+  G K D  T++ I+           +  A  GL    F L 
Sbjct: 121 YVNEGKVEDALGLLRSMQKDGWKPDVITYNTIL-----------SGHARNGLKTQAFEL- 168

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM-- 424
                                 +    L  NV+S+N LI+G+   G   EA+++F  M  
Sbjct: 169 -------------------LSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQS 209

Query: 425 ---------LLN-GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474
                    +LN  MRPN +T    L AC+   L  +G EI     R+   +P     + 
Sbjct: 210 PSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRN-GFEPNIFVSSA 268

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY------ 528
           ++++  +   +D A  +      + T + W AL+     N   E     A KL+      
Sbjct: 269 LVDMYAKCHDMDSANKVFFRIDGRNTVS-WNALMAGYIYNKQPE----EALKLFLEMLGE 323

Query: 529 GMEPEKLS 536
           G++P  ++
Sbjct: 324 GLQPSSIT 331



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 89/180 (49%), Gaps = 7/180 (3%)

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
           ++ L   V SWN +I+G   +G  E+A+++F +ML     PN +T  ++L AC  +GL  
Sbjct: 3   ERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPAC--TGLKA 60

Query: 451 -RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509
            R  +   +++  H I         +I++  + G  D A  +   A  K T  MW  ++ 
Sbjct: 61  LRLGKAIHAIALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTA-MWNEMIA 119

Query: 510 ACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           A    G +E  LG   + +  G +P+ ++ Y  +L+ +  +G   +A E++  + + GL+
Sbjct: 120 AYVNEGKVEDALGLLRSMQKDGWKPDVIT-YNTILSGHARNGLKTQAFELLSEMVQMGLK 178


>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 762

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/606 (34%), Positives = 352/606 (58%), Gaps = 17/606 (2%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           A+++F  +  E G    + T    +SA   L S    K++  Y +    E D  + N + 
Sbjct: 154 AVQVFREM-LEAGAYPTNYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLC 212

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            ++ +CG +  A + F  + ++N++S   +I+   D+G+       F+++  E  +    
Sbjct: 213 SLYSKCGSLECAVKAFRRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEF 272

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T  + +     ++ + +G Q+HS  +K+GF  N+ +  +++ +Y KCG I +A+ +FDEM
Sbjct: 273 TLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEM 332

Query: 293 SEKTTVGWNTIIAGYA-----------LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
              + V WN +IAG+A            H    EAL ++ ++  SG+K D FTFS ++ +
Sbjct: 333 ETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFSSVLSV 392

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C+ L +LE  +Q HA  ++ GF  D+V  +ALV+ Y+K G IE A   F +M  + +ISW
Sbjct: 393 CSSLVALEQGEQVHAQTIKTGFLSDVVVGTALVNMYNKCGSIERASKAFVEMSIRTLISW 452

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
            ++I GY  +G+ ++A+ LFE M L G+RPN +TF+ VLSACS +G+ +   + FQ M  
Sbjct: 453 TSMITGYAQNGQPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALDYFQMMKN 512

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           ++KI P   HYAC+I++  R G LDEAF  I+    +  + +W+ L+  CR  G LELG 
Sbjct: 513 EYKITPVMDHYACLIDMFVRLGRLDEAFDFIKEMDLEPNEFIWSILIAGCRSQGKLELGF 572

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
           +AAE+L  ++P+    Y +LLN+Y S+GK KE + V + ++ + L  L   SWI +K + 
Sbjct: 573 YAAEQLLNLKPKDTETYNLLLNMYLSAGKWKEVSRVRKMMKEEKLGRLKDWSWISIKDKI 632

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEK---TLLPDVDEQEQRVLS--YHS 636
           + F    +SH Q+ E+Y  +  +  +    GY  EE    T   +  ++E+ + S  YHS
Sbjct: 633 YSFKRNARSHAQSGEMYELLGNLHEKAKSFGYEWEESLEVTDEEEDADEEKALTSIVYHS 692

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           EKLA+AFGL+NTS+  P+++ +S  +C DCHN I++I++++ REI++RD+ R H F +G 
Sbjct: 693 EKLAIAFGLLNTSNAVPIRVTKSISMCRDCHNFIRIISLLSAREIIIRDSKRLHKFINGH 752

Query: 697 CSCGDY 702
           CSCGD+
Sbjct: 753 CSCGDF 758



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 238/468 (50%), Gaps = 21/468 (4%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           +REAL          G  V S+ Y  ++  CI  + + + +++ ++++ TG   D ++  
Sbjct: 54  FREALSFIR-----EGTKVESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMT 108

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ ++ +CG M  AR++FDE+P RN+VS   ++ G +       A  +F ++ E  +  
Sbjct: 109 FLVNVYAKCGTMETARKVFDELPRRNVVSWTTLMTGYVHDSKPELAVQVFREMLEAGAYP 168

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
            + T  T + AS+ L    +GKQ+H  ++K     +  +  +L  +YSKCGS+E A   F
Sbjct: 169 TNYTLGTALSASSDLHSKELGKQIHGYSIKYRIEFDASIGNSLCSLYSKCGSLECAVKAF 228

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
             + +K  + W T+I+ +  +G +   L  + EM    V+ + FT +  + +C  + SL+
Sbjct: 229 RRIRDKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPNEFTLTSALSLCCVMQSLD 288

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
              Q H+  ++ GF  ++   ++++  Y K G I +A+ +FD+M   ++++WNA+IAG+ 
Sbjct: 289 IGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLFDEMETISLVTWNAMIAGHA 348

Query: 410 N-----------HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
                       H  G EA+ +F ++  +GM+P+  TF +VLS CS     E+G ++   
Sbjct: 349 RMMDFAKDDLAAHQCGTEALSIFLKLNRSGMKPDLFTFSSVLSVCSSLVALEQGEQVHAQ 408

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
             +   +    +  A ++ +  + G ++ A         +T  + W +++T    NG  +
Sbjct: 409 TIKTGFLSDVVVGTA-LVNMYNKCGSIERASKAFVEMSIRTLIS-WTSMITGYAQNGQPQ 466

Query: 519 --LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
             L  F   +L G+ P K++ +V +L+  + +G + EA +  + ++ +
Sbjct: 467 QALLLFEDMRLAGVRPNKIT-FVGVLSACSHAGMVDEALDYFQMMKNE 513


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/618 (33%), Positives = 358/618 (57%), Gaps = 18/618 (2%)

Query: 101 IEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           I    LN +   ALE+F E+L+   G      T   ++SAC+   +I   K+V  Y +  
Sbjct: 151 ITGYTLNSQPVLALEVFVEMLKL--GRYPSDYTLGGMLSACVASHNIDLGKQVHGYTIKY 208

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL-L 218
           G      + N +  ++ + G +    R F  +P++N+++   +I+   +  +Y E  L L
Sbjct: 209 GAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDENYTELGLNL 268

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           FLD+ +        T  +++        +++GKQ+     K+G   N+ V  + + +Y +
Sbjct: 269 FLDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPVKNSTMYLYLR 328

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYA---------LHGYSE--EALDLYYEMRDSG 327
            G  E+A  +F+EM + + + WN +I+G+A         LH  S   +AL ++ ++  S 
Sbjct: 329 KGETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQALKIFRDLVRSA 388

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           +K D FTFS I+ +C+ + +LE  +Q HA  ++ GF  D+V NSALV+ Y+K G IE A 
Sbjct: 389 MKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEYAT 448

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
             F +M  + +++W ++I+GY  HGR  +A++LFE M+L G +PN +TF+++LSACS +G
Sbjct: 449 KAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEITFVSLLSACSYAG 508

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
           L E     F  M  ++ I+P   HY CMI++  R G LD+A+A I+   F+  + +W++L
Sbjct: 509 LVEEAMRYFDMMQNEYHIEPLMDHYGCMIDMFVRLGRLDDAYAFIKRKGFEPNEAIWSSL 568

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           +  CR +GN+EL  +AA++L  ++P+ +  YV+LLN+Y S+G+ ++ A V +  + + L 
Sbjct: 569 VAGCRSHGNMELAFYAADRLLELKPKVVETYVLLLNMYISTGRWRDVARVRKLSKHEDLG 628

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ 627
           +L   SWI ++ + + F + D+SH Q+ E+Y+ ++ ++ +    GY P + T L D +E 
Sbjct: 629 ILRDRSWITIRDKVYFFKADDRSHPQSTELYQLLETLLEKAKAIGYEPYQNTELYDSEED 688

Query: 628 EQRV---LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVR 684
            +     L +HSE+LAVA GL+       ++I ++  +C DCH++IK  +++  REIVVR
Sbjct: 689 GKPAAGSLKHHSERLAVALGLLKAPPGVTVRITKNITMCRDCHSSIKFFSLLANREIVVR 748

Query: 685 DASRFHHFKDGMCSCGDY 702
           D+ R H FKDG CSCGD+
Sbjct: 749 DSKRLHKFKDGRCSCGDF 766



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 216/444 (48%), Gaps = 17/444 (3%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G  V S+ Y  L+  CI   S+   K +  +M+ TG   D+++   ++ +++RCG   DA
Sbjct: 73  GQSVQSAMYVPLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGNSQDA 132

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R LFDEMPE+N+V+   +I G   +   + A  +F+++ +        T   M+ A    
Sbjct: 133 RNLFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVAS 192

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             I +GKQ+H   +K G      +  +L  +Y+K G++E     F  + +K  + W T+I
Sbjct: 193 HNIDLGKQVHGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMI 252

Query: 305 AGYAL-HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           +  A    Y+E  L+L+ +M    V  + FT + ++ +C     +   KQ      + G 
Sbjct: 253 SACAEDENYTELGLNLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGC 312

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN-----------HG 412
             ++   ++ +  Y + G  E+A  +F++M   +VI+WNA+I+G+               
Sbjct: 313 ATNLPVKNSTMYLYLRKGETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARS 372

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
           RG +A+++F  ++ + M+P+  TF ++LS CS     E+G +I     +   +    ++ 
Sbjct: 373 RGFQALKIFRDLVRSAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNS 432

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGM 530
           A ++ +  + G ++ A       P +T    W ++++    +G     +  F    L G 
Sbjct: 433 A-LVNMYNKCGCIEYATKAFVEMPTRTLVT-WTSMISGYSQHGRPHDAIQLFEDMILAGA 490

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEA 554
           +P +++ +V LL+  + +G ++EA
Sbjct: 491 KPNEIT-FVSLLSACSYAGLVEEA 513



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 96/203 (47%), Gaps = 11/203 (5%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M   G  +    +  ++  C    SL  AK  H  +V+ G  +DI   ++LV+ Y + G 
Sbjct: 69  MLKEGQSVQSAMYVPLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATSLVNVYMRCGN 128

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
            +DAR++FD+M  KNV++W ALI GY  + +   A+E+F +ML  G  P+  T   +LSA
Sbjct: 129 SQDARNLFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSA 188

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYA----CMIELLGREGLLDEAFALIRGAPFK 498
           C  S   + G ++       + IK  A         +  L  + G L+      +  P K
Sbjct: 189 CVASHNIDLGKQV-----HGYTIKYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDK 243

Query: 499 TTKNMWAALLTACRVNGN-LELG 520
                W  +++AC  + N  ELG
Sbjct: 244 NVIT-WTTMISACAEDENYTELG 265


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/624 (36%), Positives = 344/624 (55%), Gaps = 64/624 (10%)

Query: 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL------FDE 190
           I AC   +S+RE+K+V ++++ TG   D  +   +L    R     D R +      FD+
Sbjct: 22  IKAC---KSMRELKQVHAFLVKTGQTHDNAIATEIL----RLSATSDFRDIGYALSVFDQ 74

Query: 191 MPERNLVSCNMIIAGMIDSGD-YLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELIS 248
           +PERN  + N +I  + ++ D +L+A L+F  +  E + +    TF ++++A A +  ++
Sbjct: 75  LPERNCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLA 134

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA--------QGV------------ 288
            GKQ+H   LK G  D+ FV   L+ MY  CGS+EDA        +GV            
Sbjct: 135 EGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERG 194

Query: 289 ---------------------------FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
                                      FD M++++ V WN +I+GYA +G+ +EA+++++
Sbjct: 195 REFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFH 254

Query: 322 EMRDSG-VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380
            M   G V  +  T   ++   +RL  LE  K  H    ++   +D V  SALVD Y+K 
Sbjct: 255 RMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKC 314

Query: 381 GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
           G IE A  VF+++   NVI+WNA+I G   HG+  +      +M   G+ P+ VT++A+L
Sbjct: 315 GSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAIL 374

Query: 441 SACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTT 500
           SACS +GL + G   F  M     +KP+  HY CM++LLGR G L+EA  LI   P K  
Sbjct: 375 SACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPD 434

Query: 501 KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560
             +W ALL A +++ N+++G  AAE L  M P     YV L N+Y SSG     A V   
Sbjct: 435 DVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLM 494

Query: 561 LRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTL 620
           ++   +R  P CSWIE+    H FL  D SH + K+I+  ++ +  ++S  G++P+   +
Sbjct: 495 MKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQV 554

Query: 621 LPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGR 679
           L  +DE+ ++ VL YHSEK+AVAFGLI+T   TPL IV++ RIC DCH+++KLI+ +  R
Sbjct: 555 LLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMYER 614

Query: 680 EIVVRDASRFHHFKDGMCSCGDYW 703
           +IV+RD  RFHHF+ G CSC DYW
Sbjct: 615 KIVIRDRKRFHHFEHGSCSCMDYW 638



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 162/380 (42%), Gaps = 75/380 (19%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R+ +AL +F  +  E   +    T+ +++ AC  +  + E K+V   +L  G   D ++ 
Sbjct: 96  RHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVV 155

Query: 169 NRVLLMHVRCGMMIDA-------------------------------------------- 184
             +L M+V CG M DA                                            
Sbjct: 156 TNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNL 215

Query: 185 ---RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRA 240
              R LFD M +R++VS N++I+G   +G Y EA  +F  + +      +R T  +++ A
Sbjct: 216 KAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPA 275

Query: 241 SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW 300
            + L ++ +GK +H  A K     +  +  AL+DMY+KCGSIE A  VF+ + +   + W
Sbjct: 276 ISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITW 335

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           N +I G A+HG + +  +    M   G+     T+  I+  C+           HAGLV 
Sbjct: 336 NAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACS-----------HAGLVD 384

Query: 361 HG--FGLDIVANSAL----------VDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAG 407
            G  F  D+V +  L          VD   + G +E+A  +   M  K + + W AL+  
Sbjct: 385 EGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGA 444

Query: 408 YGNHGR---GEEAVELFEQM 424
              H     G  A E+  QM
Sbjct: 445 SKMHKNIKIGMRAAEVLMQM 464


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/604 (33%), Positives = 354/604 (58%), Gaps = 36/604 (5%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   V N  Y++AL +F+ +  +G F   + TY  ++ AC    ++    ++   ++  G
Sbjct: 109 IRSYVNNGLYQDALLVFKTMANQG-FYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLG 167

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            + +LY+ N ++ M+ +C  +  ARR+ DEMP R++VS N ++AG   +G + +A    L
Sbjct: 168 LDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDA----L 223

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            L  E  D         ++  AG    ++G  L +                     + C 
Sbjct: 224 KLCREMEDLK-------LKPDAG----TMGSLLPAVT------------------NTSCD 254

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           ++   + +F ++ EK+ + WN +IA Y  +    EA+DLY +M+  GV+ D  + S ++ 
Sbjct: 255 NVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLP 314

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C  L++    ++ H  + R     +++  +AL+D Y+K G +++AR VFD+M+ ++V+S
Sbjct: 315 ACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVS 374

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           W ++I+ YG  G+G++AV LF++M  +G  P+ + F++VL+ACS +GL + G   F  M+
Sbjct: 375 WTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMA 434

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
            ++ I P   HY CM++LLGR G +DEA+ L R  P +  + +W +LL+ACRV  ++ + 
Sbjct: 435 -EYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIA 493

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
             AA+ L+ + PE+   YV+L NIY  +G+ ++   V   +  KG++ +P  S +E+   
Sbjct: 494 LLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDH 553

Query: 581 PHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKL 639
            + FL+GDQSH Q+KEIY+ +  ++  + + GY+PE  + L DV+E+++   L+ HSEKL
Sbjct: 554 VYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVHSEKL 613

Query: 640 AVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSC 699
           A+ F ++NT   + ++I ++ R+C DCH A KLI+ +  REI++RD  RFHHF+DG+CSC
Sbjct: 614 AIVFAILNTKPGSTIRITKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSC 673

Query: 700 GDYW 703
           GDYW
Sbjct: 674 GDYW 677


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 206/565 (36%), Positives = 336/565 (59%), Gaps = 10/565 (1%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           RS+R+  ++ +++L  G +    + + ++ ++ +  + + + ++FDE P+++  + + +I
Sbjct: 39  RSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVI 98

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRT----FATMIRASAGLELISVGKQLHSCALK 259
           +    +    EA LL L  +    + G R     + +  +A   L    VGK +H  A+K
Sbjct: 99  SAFAQN----EAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVK 154

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDL 319
            G+  +VFV  +L+DMY+KCG I DA+ +FDEM E+  V W+ +I GYA      EAL L
Sbjct: 155 TGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTL 214

Query: 320 YYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379
           + +     V ++ FTFS +IR+C+    LE  K  H   ++  F       SAL+  YSK
Sbjct: 215 FKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSK 274

Query: 380 WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
            G IE A  VFD++  +N+  WN+++     H   +    LFE+M   GM+PN + FL+V
Sbjct: 275 CGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSV 334

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499
           L ACS +GL E+G E F S+ RD+ I+P   HYA +++LLGR G L EA ++I+  P + 
Sbjct: 335 LYACSHAGLVEKGREYF-SLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRP 393

Query: 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
           T+++W ALLT CR++ + E+  F A+++  M+      +V+L N Y ++G+ +EAA + +
Sbjct: 394 TESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRK 453

Query: 560 TLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKT 619
            LR +G++     SW+E   + H F +GD+SH +  EIY K++ +  E+ K GYV +   
Sbjct: 454 MLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSF 513

Query: 620 LLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTG 678
           +L  VD E++   + YHSE+LA+AFGLI      P++++++ R+C DCH AIK ++   G
Sbjct: 514 VLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCG 573

Query: 679 REIVVRDASRFHHFKDGMCSCGDYW 703
           R ++VRD +RFH F+DG CSCGDYW
Sbjct: 574 RVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 186/391 (47%), Gaps = 9/391 (2%)

Query: 43  FSLDKRKWKRSFQRVECCLMEQGLKPRPKPNKIYTEELKESSLP-------DTQMKKPSA 95
            S  + +  R   ++   +++ GL+  P  +        ++ LP       D   KK S 
Sbjct: 33  LSFTRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSST 92

Query: 96  GICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSY 155
              S I     N+    AL+ F  +    G       Y +   AC  LR     K V   
Sbjct: 93  TWSSVISAFAQNEAPLLALQFFRRM-LNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCL 151

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
            + TG+  D+++ + ++ M+ +CG + DAR LFDEMPERN+VS + +I G     D +EA
Sbjct: 152 AVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEA 211

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
             LF     E  D    TF+++IR  +    + +GK +H   LKM F  + FV  ALI +
Sbjct: 212 LTLFKQALIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISL 271

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           YSKCG IE A  VFDE+  +    WN+++   A H +++    L+ EM + G+K +   F
Sbjct: 272 YSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXF 331

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
             ++  C+    +E  ++  + +  +G   +    ++LVD   + G++++A  V  +M  
Sbjct: 332 LSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPM 391

Query: 396 KNVIS-WNALIAGYGNHGRGEEAVELFEQML 425
           +   S W AL+ G   H   E A  + +++L
Sbjct: 392 RPTESVWGALLTGCRIHKDTEMAAFVADRIL 422



 Score = 49.3 bits (116), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 52/101 (51%)

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
           TR  SL    Q HA +++ G     + +  L++ YSK      +  VFD+   K+  +W+
Sbjct: 36  TRSRSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWS 95

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           ++I+ +  +     A++ F +ML +G+RP+   + +   AC
Sbjct: 96  SVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKAC 136


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/641 (33%), Positives = 368/641 (57%), Gaps = 31/641 (4%)

Query: 85  LPDTQMKKPSAGICSQ-----------IEKLVLNKRYREALELFEILEFEGGFDVGSSTY 133
           LP   +K P   I              I+ L       +ALEL  +       +    TY
Sbjct: 19  LPRPSLKPPICSITLNPTASTADNNKLIQSLCKQGNLTQALELLSLEP-----NPAQHTY 73

Query: 134 DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193
           + LI +C    S+ + +RV  ++L  GF+ D ++  +++ M+     + +AR++FD+   
Sbjct: 74  ELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRN 133

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLE---- 245
           R +   N +   +  +G   E     L+++   +  G      T+  +++A    E    
Sbjct: 134 RTIYVYNALFRALSLAGHGEEV----LNMYRRMNSIGIPSDRFTYTYVLKACVASECFVS 189

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
           L++ G+++H+  L+ G+   V +   L+DMY+K G + +A  VF++M  K  V W+ +IA
Sbjct: 190 LLNKGREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIA 249

Query: 306 GYALHGYSEEALDLYYEM--RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
            YA +G + EAL+L+ E+      +  +  T   +++ C  LA+LE  +  H  ++R G 
Sbjct: 250 CYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGL 309

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
              +   SALV  Y++ G++E  + VFD+M  ++V+SWN+LI+ YG HG G++A+ +FE+
Sbjct: 310 DSILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEE 369

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           M  NG+ P+ ++F++VL ACS +GL + G  +F SM   H I P   HYACM++LLGR  
Sbjct: 370 MTYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRAN 429

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
            L+EA  +I     +    +W +LL +CR++ N+EL + A+ +L+ +EP    NYV+L +
Sbjct: 430 RLEEAAKIIENMRIEPGPKVWGSLLGSCRIHCNVELAERASIRLFDLEPTNAGNYVLLAD 489

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           IY  +G       V + L  +GL+ +P  SWIEVK++ + F+S D+ + + ++++  + +
Sbjct: 490 IYAEAGMWDGVKRVKKLLEARGLQKVPGRSWIEVKRKIYSFVSVDEVNPRMEQLHALLVK 549

Query: 604 MMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           + +E+ + GYVP+ K +L D+   E +R++  HSEKLAVAFGLIN+S    ++I +S R+
Sbjct: 550 LSMELKEEGYVPQTKVVLYDLKAAEKERIVLGHSEKLAVAFGLINSSKGEVIRITKSLRL 609

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH+  K I+    +EI+VRD +RFHHF+DG+CSCGDYW
Sbjct: 610 CEDCHSFTKFISKFANKEILVRDVNRFHHFRDGVCSCGDYW 650


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/617 (35%), Positives = 351/617 (56%), Gaps = 37/617 (5%)

Query: 91  KKPSAGICSQIEKLVLNK-RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV 149
           + P++ +C+ + +   N  R  EA++L+  ++   G  V + TY  ++  C         
Sbjct: 93  QAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQ-RMGVGVNNFTYPFVLKVCASELGAVFG 151

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           + V   ++ TGF  DL++   ++ M+ +CG + DA  +FD M  R++V    +I     +
Sbjct: 152 EVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQA 211

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
              L+A +LF  + EE    G    A  + ++ G        QL         GD     
Sbjct: 212 ERPLKALMLFRKMQEE-GFLGDEITAISVASAVG--------QL---------GDGRM-- 251

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
                      +I  A+ VFD M E+  + WN++++GY  +G   +AL L+ +M+ S   
Sbjct: 252 -----------AISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECD 300

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            +  T  +++  C+ L S    ++ H  ++     +D    +A++D Y K G ++ A  +
Sbjct: 301 PNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEM 360

Query: 390 FD--KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
           F+  ++  ++V SWN LI+GYG HG G+EA+ELF +M + G+ PN +TF ++LSACS +G
Sbjct: 361 FNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAG 420

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
           L + G + F  M++   ++P   HYACM+++LGR G L+EAF LI+  P + +  +W AL
Sbjct: 421 LIDEGRKCFADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGAL 479

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           L ACR++GN ELG+ AA  L+ +EPE    YV++ NIY +S K KE   V + ++ +GL+
Sbjct: 480 LLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLK 539

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-E 626
              A S IE   + H F + DQS    +E+YRKV+ + +E+   GYVP+   +L DV+ E
Sbjct: 540 KPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPE 599

Query: 627 QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
            ++ +L+YHSEKLAVAFG++      P+Q+ ++ R+C DCH A K I+ + GR+I+VRD 
Sbjct: 600 DKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDG 659

Query: 687 SRFHHFKDGMCSCGDYW 703
           +RFHHF+ G CSCGDYW
Sbjct: 660 NRFHHFQGGRCSCGDYW 676



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 117/452 (25%), Positives = 207/452 (45%), Gaps = 58/452 (12%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGF---EPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           YD L+  C  L ++   K + S + + GF    P  +   R+++++ + G +  AR LFD
Sbjct: 28  YDHLLQCCTSLTTL---KLIHSSLSTRGFLLHTP--HFLARLIILYSKLGDLHSARTLFD 82

Query: 190 EMPER--------NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRAS 241
                        N   CN ++    ++G   EA  L++ +        + T+  +++  
Sbjct: 83  HRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVC 142

Query: 242 AGLELISV-GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW 300
           A  EL +V G+ +H   ++ GFG ++FV  AL+DMY+KCG I DA  VFD M  +  V W
Sbjct: 143 AS-ELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCW 201

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
             +I  Y       +AL L+ +M++ G   D  T    I + + +  L   + A      
Sbjct: 202 TAMITLYEQAERPLKALMLFRKMQEEGFLGDEIT---AISVASAVGQLGDGRMA------ 252

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
                                 I  AR VFD+M  +N ISWN++++GY  +GR  +A+ L
Sbjct: 253 ----------------------ISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSL 290

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
           F QM  +   PN VT L ++SACS  G    G ++  +     K+         ++++  
Sbjct: 291 FNQMQASECDPNPVTALIMVSACSYLGSKHLGRKL-HNFVISSKMDIDTTLRNAIMDMYM 349

Query: 481 REGLLDEAFALIRGAPF-KTTKNMWAALLTACRVNGN----LELGKFAAEKLYGMEPEKL 535
           + G LD A  +       +   + W  L++   V+G+    LEL  F+  ++ G+EP  +
Sbjct: 350 KCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALEL--FSRMQVEGVEPNDI 407

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           + +  +L+  + +G + E  +    + +  +R
Sbjct: 408 T-FTSILSACSHAGLIDEGRKCFADMTKLSVR 438



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 163/377 (43%), Gaps = 59/377 (15%)

Query: 272 LIDMYSKCGSIEDAQGVFDE--------MSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
           LI +YSK G +  A+ +FD              +   NT++  YA  G S EA+DLY  M
Sbjct: 64  LIILYSKLGDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYM 123

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
           +  GV +++FT+  ++++C         +  H  +VR GFG D+   +ALVD Y+K G I
Sbjct: 124 QRMGVGVNNFTYPFVLKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEI 183

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
            DA  VFD+ML ++V+ W A+I  Y    R  +A+ LF +M   G   + +T ++V SA 
Sbjct: 184 GDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAV 243

Query: 444 SRSG----LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI-RGAPFK 498
            + G       R   +F  M   + I      +  M+    + G   +A +L  +    +
Sbjct: 244 GQLGDGRMAISRARLVFDRMEERNGIS-----WNSMLSGYTQNGRPTDALSLFNQMQASE 298

Query: 499 TTKNMWAALL--TACRVNGNLELGKFAAEKLYGMEPEKLSNYVV-------------LLN 543
              N   AL+  +AC   G+  LG+            KL N+V+             +++
Sbjct: 299 CDPNPVTALIMVSACSYLGSKHLGR------------KLHNFVISSKMDIDTTLRNAIMD 346

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           +Y   G L  A E+        L      SW       +V +SG   H   KE      R
Sbjct: 347 MYMKCGDLDTAVEMFNNCE---LGERDVSSW-------NVLISGYGVHGHGKEALELFSR 396

Query: 604 MMLEISKHGYVPEEKTL 620
           M +E    G  P + T 
Sbjct: 397 MQVE----GVEPNDITF 409


>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
 gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/659 (34%), Positives = 357/659 (54%), Gaps = 43/659 (6%)

Query: 85  LPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLR 144
           L D   ++  A   + I  LV    Y +ALELF +L    GF     T   L++AC    
Sbjct: 260 LFDEMPQRDIASWNTMISSLVKGLSYEKALELFRVLNQNKGFKADQFTLSTLLTACARCH 319

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM------------------------ 180
           +  + + + +Y +  G E +L + N ++  + RCG                         
Sbjct: 320 ARIQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLNHVAALFERMPVRDIITWTEMIT 379

Query: 181 ------MID-ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
                 ++D A  +F++MPE+N VS N ++ G   + + L+A  LF+ + +E ++    T
Sbjct: 380 AYMEFGLVDLAVDMFNKMPEKNSVSYNALLTGFCKNNEGLKALNLFVRMVQEGAELTDFT 439

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
              +I A   L  + + +Q+H   +K GF  N  +  ALIDM SKCG ++DA  +F  +S
Sbjct: 440 LTGVINACGLLLKLEISRQIHGFIIKFGFRSNACIEAALIDMCSKCGRMDDADRMFQSLS 499

Query: 294 EKTTVGWNTI-----IAGYALHGYSEEALDLYYEMRDSGVK-MDHFTFSMIIRICTRLAS 347
              T G N+I     I GYA +G  EEA+ L+Y  +  G   +D   F+ I+ +C  L  
Sbjct: 500 ---TDGGNSIIQTSMICGYARNGLPEEAICLFYRCQSEGTMVLDEVAFTSILGVCGTLGF 556

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
            E  KQ H   ++ GF  ++   ++++  YSK   I+DA   F+ M   +V+SWN LIAG
Sbjct: 557 HEVGKQIHCQALKTGFHAELGVGNSIISMYSKCYNIDDAIKAFNTMPGHDVVSWNGLIAG 616

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA--CSRSGLSERGWEIFQSMSRDHKI 465
              H +G+EA+ ++  M   G++P+ +TF+ ++SA   + S L +    +F SM   H +
Sbjct: 617 QLLHRQGDEALAIWSSMEKAGIKPDAITFVLIVSAYKFTSSNLLDECRSLFLSMKMIHDL 676

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
           +P + HYA ++ +LG  GLL+EA  LI   PF    ++W ALL  CR++ N  +GK  A+
Sbjct: 677 EPTSEHYASLVGVLGYWGLLEEAEELINKMPFDPEVSVWRALLDGCRLHANTSIGKRVAK 736

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
            + GMEP   S YV++ N+Y +SG+   +  V   +R +GLR  P  SW+ +KKQ H F 
Sbjct: 737 HIIGMEPRDPSTYVLVSNLYAASGRWHCSEMVRENMRDRGLRKHPCRSWVIIKKQLHTFY 796

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFG 644
           + D+SH Q+ +IY  +D ++L+  K GY P+   +L +V+EQ+++  L YHS KLA  +G
Sbjct: 797 ARDKSHPQSNDIYSGLDILILKCLKAGYEPDMSFVLQEVEEQQKKDFLFYHSAKLAATYG 856

Query: 645 LINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           L+ T    P+++V++  +C DCH  +K   +VT REI+ RDAS FH F +G CSC  YW
Sbjct: 857 LLKTRPGEPIRVVKNILLCRDCHTFLKYATVVTQREIIFRDASGFHCFSNGQCSCKGYW 915



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 189/383 (49%), Gaps = 36/383 (9%)

Query: 108 KRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
            R  EA++LF  +   G  +    ++ A+++ACI    +    +V +  +  G+   +++
Sbjct: 182 NRETEAIQLFFRMRISG-IEPNEYSFVAILTACIRSLELEMGLQVHALAIKLGYSQLVFV 240

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            N ++ ++ +CG +  A  LFDEMP+R++ S N +I+ ++    Y +A  LF  L +   
Sbjct: 241 ANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMISSLVKGLSYEKALELFRVLNQNKG 300

Query: 228 -DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS----- 281
                 T +T++ A A       G+++H+ A+++G  +N+ VS A+I  Y++CGS     
Sbjct: 301 FKADQFTLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLNHVA 360

Query: 282 --------------------------IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
                                     ++ A  +F++M EK +V +N ++ G+  +    +
Sbjct: 361 ALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYNALLTGFCKNNEGLK 420

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           AL+L+  M   G ++  FT + +I  C  L  LE ++Q H  +++ GF  +    +AL+D
Sbjct: 421 ALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQIHGFIIKFGFRSNACIEAALID 480

Query: 376 FYSKWGRIEDARHVFDKMLCK--NVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPN 432
             SK GR++DA  +F  +     N I   ++I GY  +G  EEA+ LF +    G M  +
Sbjct: 481 MCSKCGRMDDADRMFQSLSTDGGNSIIQTSMICGYARNGLPEEAICLFYRCQSEGTMVLD 540

Query: 433 HVTFLAVLSACSRSGLSERGWEI 455
            V F ++L  C   G  E G +I
Sbjct: 541 EVAFTSILGVCGTLGFHEVGKQI 563



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 158/300 (52%), Gaps = 5/300 (1%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D ++ N V+  +++ G+++DA  +F  M   ++VS + +I+         EA  LF  + 
Sbjct: 136 DTHLGNAVIAAYIKLGLVVDAYEVFMGMSTPDVVSYSALISSFSKLNRETEAIQLFFRMR 195

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
               +    +F  ++ A      + +G Q+H+ A+K+G+   VFV+ ALI +Y KCG ++
Sbjct: 196 ISGIEPNEYSFVAILTACIRSLELEMGLQVHALAIKLGYSQLVFVANALIGLYGKCGCLD 255

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRIC 342
            A  +FDEM ++    WNT+I+        E+AL+L+  + ++ G K D FT S ++  C
Sbjct: 256 HAIHLFDEMPQRDIASWNTMISSLVKGLSYEKALELFRVLNQNKGFKADQFTLSTLLTAC 315

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
            R  +    ++ HA  +R G   ++  ++A++ FY++ G +     +F++M  +++I+W 
Sbjct: 316 ARCHARIQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLNHVAALFERMPVRDIITWT 375

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
            +I  Y   G  + AV++F +M       N V++ A+L+   ++    +   +F  M ++
Sbjct: 376 EMITAYMEFGLVDLAVDMFNKM----PEKNSVSYNALLTGFCKNNEGLKALNLFVRMVQE 431



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 173/363 (47%), Gaps = 21/363 (5%)

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
            ++R S     I + + LH+  LK+G  ++  +  A+I  Y K G + DA  VF  MS  
Sbjct: 109 NLLRLSVKYTDIDLARALHASILKLG--EDTHLGNAVIAAYIKLGLVVDAYEVFMGMSTP 166

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             V ++ +I+ ++      EA+ L++ MR SG++ + ++F  I+  C R   LE   Q H
Sbjct: 167 DVVSYSALISSFSKLNRETEAIQLFFRMRISGIEPNEYSFVAILTACIRSLELEMGLQVH 226

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
           A  ++ G+   +   +AL+  Y K G ++ A H+FD+M  +++ SWN +I+        E
Sbjct: 227 ALAIKLGYSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMISSLVKGLSYE 286

Query: 416 EAVELFEQMLLN-GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474
           +A+ELF  +  N G + +  T   +L+AC+R     +G EI     R       ++  A 
Sbjct: 287 KALELFRVLNQNKGFKADQFTLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVSNA- 345

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534
           +I    R G L+   AL    P +     W  ++TA    G ++L    A  ++   PEK
Sbjct: 346 IIGFYTRCGSLNHVAALFERMPVRDIIT-WTEMITAYMEFGLVDL----AVDMFNKMPEK 400

Query: 535 LS-NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM--------LPACSW---IEVKKQPH 582
            S +Y  LL  +  + +  +A  +   + ++G  +        + AC     +E+ +Q H
Sbjct: 401 NSVSYNALLTGFCKNNEGLKALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQIH 460

Query: 583 VFL 585
            F+
Sbjct: 461 GFI 463


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/574 (35%), Positives = 337/574 (58%), Gaps = 3/574 (0%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S+T+   ++AC  L  +   + V     + G+  D+++ + +L ++ RCG M +A R+FD
Sbjct: 107 STTFTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFD 166

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
            MP ++ V+ + ++AG + +G  +EA  ++  + E            +I+A        +
Sbjct: 167 GMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARI 226

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G  +H   L+     +V  + +L+ MY+K G ++ A  VF  M  +  V W+ +I+G+A 
Sbjct: 227 GASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQ 286

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +G + EALDL+ E++  G++   +     +  C  +  L+  K  H  ++R       + 
Sbjct: 287 NGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRR-LEWQCIL 345

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            +A++D YSK G +E AR +F+K+  ++++ WNA+IA  G HG G +A+ LF+++   G+
Sbjct: 346 GTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGI 405

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
           +P+H TF ++LSA S SGL E G   F  M ++  I+P   HY C+++LL R GL++EA 
Sbjct: 406 KPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEAN 465

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549
            ++     + T  +W  LL+ C  N  LELG+  A+K+  + PE +    ++ N+Y ++ 
Sbjct: 466 DMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYAAAK 525

Query: 550 KLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEIS 609
           K  +  E+ + ++  G + +P  S IEVK   H F+  DQSH Q +EI + V ++  E+ 
Sbjct: 526 KWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNSEMR 585

Query: 610 KHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
           K GYVP  + +  D+DE +  +LSYHSE+LA+AFGL+NTS  T L I+++ R+C DCH+A
Sbjct: 586 KLGYVPRTEFVYHDLDEDQ--LLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDA 643

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           IK I+ +  REIVVRDA RFHHFKDG CSCGDYW
Sbjct: 644 IKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 118/235 (50%), Gaps = 5/235 (2%)

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           WN +++ ++  G    AL ++  +  S  + +  TF++ +  C RL  L+ A+       
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRAL-PSSARPNSTTFTLTLTACARLGDLDAAESVRVRAF 134

Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVE 419
             G+G D+   SAL+  YS+ G +E+A  VFD M  K+ ++W+ ++AG+   GR  EA+ 
Sbjct: 135 AAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALA 194

Query: 420 LFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479
           ++ +M  +G+  + V  + V+ AC  +G +  G  +   + R H ++   +    ++ + 
Sbjct: 195 MYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLR-HCMRMDVVTTTSLVSMY 253

Query: 480 GREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL--ELGKFAAEKLYGMEP 532
            + G LD A  + R  P++     W+AL++    NG     L  F   +  G++P
Sbjct: 254 AKNGHLDVACQVFRMMPYRNDVT-WSALISGFAQNGRAVEALDLFRELQADGLQP 307


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/609 (34%), Positives = 354/609 (58%), Gaps = 7/609 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVF--SYM 156
           S I   + N R +EA+++++ +  +G       T+ ++  A   L  + E +R    S +
Sbjct: 146 SMIASYIRNGRSKEAIDIYQRMVPDGILP-DEFTFSSVFKAFSDLGLVHEGQRAHGQSVV 204

Query: 157 LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF 216
           L  G   ++++ + ++ M+ + G M DAR + D++  +++V    +I G    G+  E+ 
Sbjct: 205 LGVGV-SNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESL 263

Query: 217 LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276
            +F ++ ++  +    T ++++     LE ++ G+ +H   +K G    V    +L+ MY
Sbjct: 264 QVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMY 323

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
            +CG ++D+  VF +      V W ++I G   +G  E AL  + +M  S +  + FT S
Sbjct: 324 YRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLS 383

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            ++R C+ LA LE  KQ HA +++ G  +D    +AL+DFY K G  E AR VF+ +L  
Sbjct: 384 SVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEV 443

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           +V+S N++I  Y  +G G EA++LF  M   G+ PN+VT+L VLSAC+ +GL E G  IF
Sbjct: 444 DVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIF 503

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
            S      I+    HYACM++LLGR G L EA  LI          +W  LL+ACR++G+
Sbjct: 504 SSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNISDVV-IWRTLLSACRIHGD 562

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
           +E+ K    ++  + PE    +V+L N+Y S+G   +  E+   +R   L+  PA SW++
Sbjct: 563 VEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVD 622

Query: 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYH 635
           V+++ H F++GD SH   ++I  K++ ++ ++ + GYVP+ + +L D+DE+++ R L YH
Sbjct: 623 VEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYH 682

Query: 636 SEKLAVAFGLINTS-DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKD 694
           SEKLAVAF L  ++   T ++I+++ R+C DCH  +K ++ + GR+I+ RD  RFHHF++
Sbjct: 683 SEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRN 742

Query: 695 GMCSCGDYW 703
           G+CSCGDYW
Sbjct: 743 GLCSCGDYW 751



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 157/293 (53%), Gaps = 9/293 (3%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           ++ ++++I+   G++ I+   ++ S ALK GF  ++     LID Y KCGS+  A+ VFD
Sbjct: 77  TKLYSSLIQQCIGIKSITDITKIQSHALKRGFHHSL--GNKLIDAYLKCGSVVYARKVFD 134

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           E+  +  V WN++IA Y  +G S+EA+D+Y  M   G+  D FTFS + +  + L  +  
Sbjct: 135 EVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHE 194

Query: 351 AKQAHAGLVRHGFGL-DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
            ++AH   V  G G+ ++   SALVD Y+K+G++ DAR V D+++ K+V+ + ALI GY 
Sbjct: 195 GQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYS 254

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
           +HG   E++++F  M   G+  N  T  +VL  C        G  +   +     ++   
Sbjct: 255 HHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSG-RLIHGLIVKAGLESAV 313

Query: 470 MHYACMIELLGREGLLDEAFALIRG--APFKTTKNMWAALLTACRVNGNLELG 520
                ++ +  R GL+D++  + +    P + T   W +++     NG  E+ 
Sbjct: 314 ASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVT---WTSVIVGLVQNGREEIA 363


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 207/583 (35%), Positives = 345/583 (59%), Gaps = 13/583 (2%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTG-FEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           TY++L+ A    R       V   + +   F  D ++  R++  +     +  AR++FDE
Sbjct: 250 TYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPAARQVFDE 309

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA-----SAGLE 245
            P +N+   N ++  +  +    EA     D+        S ++A  ++A     ++ L 
Sbjct: 310 APVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASASHLP 369

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
             +  +++H+ A++ G+G +  V+  LID Y+K G +  A+ VF  M ++  V W+ +I 
Sbjct: 370 ASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIG 429

Query: 306 GYALHGYSEEALDLYYEM--RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
            YA +    +A+ ++ EM   D+ +  +  T   ++  C  + +L   K  HA ++R GF
Sbjct: 430 CYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYILRRGF 489

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFE 422
            L +   +AL+  Y K G +E  R++F+ +   +NV+SWN+LI+GYG HG G E++++FE
Sbjct: 490 DLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGRESLQVFE 549

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           +M+  G+ PN +TF++VL ACS  GL E+G ++F+SM  ++ + PRA HYACM++LLGR 
Sbjct: 550 EMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESMV-EYNVTPRAEHYACMVDLLGRA 608

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
           G LDEA  LI+    + +  +W +LL ACR++G++E  + A   L+ +EP    NYV+L 
Sbjct: 609 GRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACSHLFDLEPRNAGNYVLLA 668

Query: 543 NIYNSSGKLKEAAEVIRT-LRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV 601
           +IY +  KL+   +V++  L    L  +P CSWIEVKK+ + F+S D  + Q +E+   +
Sbjct: 669 DIY-ARAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKLYSFVSVDNKNPQVEELQALI 727

Query: 602 DRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSH 660
              + ++   GYVP+ +++L D++E+E +R+L  HSEKLAVAFGLI T     ++I ++ 
Sbjct: 728 GEFVTQMKNEGYVPDTRSVLYDIEEEEKERILLGHSEKLAVAFGLIKTGSGEAIRITKNL 787

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           R+C DCH+  K I+  T REIVVRD +RFHHF++G+CSC DYW
Sbjct: 788 RLCEDCHSVTKFISKFTDREIVVRDVNRFHHFRNGVCSCRDYW 830



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/237 (23%), Positives = 120/237 (50%), Gaps = 7/237 (2%)

Query: 83  SSLPDTQMKKPSAGICSQIEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACI 141
           +S+PD  +   SA I    +    N+R  +A+++F E++  +      S T  +++ AC 
Sbjct: 414 TSMPDRNLVSWSAMIGCYAK----NERPGDAIQIFQEMMASDADLVPNSITIVSVLHACA 469

Query: 142 GLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP-ERNLVSCN 200
           G+ ++ + K + +Y+L  GF+  + + N ++ M+++CG +   R +F+ +   RN+VS N
Sbjct: 470 GVNALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWN 529

Query: 201 MIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM 260
            +I+G    G   E+  +F ++ EE       TF +++ A + + L+  GK+L    ++ 
Sbjct: 530 SLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESMVEY 589

Query: 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEA 316
                      ++D+  + G +++A  +   M  + +   W +++    +HG+ E A
Sbjct: 590 NVTPRAEHYACMVDLLGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYA 646


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/610 (36%), Positives = 344/610 (56%), Gaps = 18/610 (2%)

Query: 105 VLNKRYREA------LELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           +L  RY +A      +ELF +   + GF+    +  ++ISAC  L S+R  +++ S  L 
Sbjct: 216 LLITRYVQAGCASKVVELF-LHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALR 274

Query: 159 TGFEPDLYMRNRVLLMHVRCGM---MIDARRLFDEMPERNLVSCNMIIAGMIDSG-DYLE 214
            G   D  +   ++ M+ +  M   M  AR++F  MP  N++S   +I+G + SG     
Sbjct: 275 LGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENN 334

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
              LF ++  E       T++ +++A A L     G+Q+H+  LK        V  AL+ 
Sbjct: 335 VMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVS 394

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MY++ G +E+A+  FD++ E   +  +  +     +      +    E  D GV    FT
Sbjct: 395 MYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKI----EGMDDGVST--FT 448

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           F+ ++     +  L   ++ HA  ++ GF  D   +++LV  Y++ G +EDA   FD+M 
Sbjct: 449 FASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMK 508

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
             NVISW ++I+G   HG  ++A+ +F  M+L G++PN VT++AVLSACS  GL + G E
Sbjct: 509 DHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKE 568

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
            F+SM +DH + PR  HYAC+++LL R GL++EA   I   P K    +W  LL+ACR  
Sbjct: 569 HFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTY 628

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
           GN E+G+ AA  +  +EP   + YV+L N+Y  +G   E A +   +R K L      SW
Sbjct: 629 GNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLSW 688

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLS 633
           ++V    H F +GD SH    +IY K+  ++ EI   GYVP+   +L D+ E+ +++ L 
Sbjct: 689 MDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSIVLHDMSEELKEQYLL 748

Query: 634 YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
            HSEK+AVAFGLI TS   P++I ++ R+C DCH+AIK I+  TGREI++RD++RFH  K
Sbjct: 749 QHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMK 808

Query: 694 DGMCSCGDYW 703
           DG+CSCG+YW
Sbjct: 809 DGICSCGEYW 818



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 171/339 (50%), Gaps = 16/339 (4%)

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEM-PERNLVSCNMIIAGMIDSGDYLEAFLLF 219
            + D  + N +L M+ +CG +  ARR+FD+M   R+LVS   + + +  +G   E+  L 
Sbjct: 72  LDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLARNGAERESLRLL 131

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISV-GKQLHSCALKMGF-GDNVFVSCALIDMYS 277
            ++ E      + T     RA    EL  + G  +    LK GF G +V V CALIDM++
Sbjct: 132 GEMLELGLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFA 191

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           + G +  AQ VFD + E+T+V W  +I  Y   G + + ++L+  M D G + D ++ S 
Sbjct: 192 RNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSS 251

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG---RIEDARHVFDKML 394
           +I  CT L S+   +Q H+  +R G   D   +  LVD Y+K      +E AR VF  M 
Sbjct: 252 MISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMP 311

Query: 395 CKNVISWNALIAGYGNHGRGEEAV-ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             NV+SW ALI+GY   G  E  V  LF +ML   +RPNH+T+  +L AC+     + G 
Sbjct: 312 RHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGR 371

Query: 454 EIFQSMSRDHKIKPRAMHY----ACMIELLGREGLLDEA 488
           +I       H +K    H       ++ +    G ++EA
Sbjct: 372 QIHA-----HVLKTSIAHVNVVGNALVSMYAESGCMEEA 405


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/573 (35%), Positives = 333/573 (58%), Gaps = 9/573 (1%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC---GMMIDARRLFDEMP 192
           LIS C    S+RE+ ++ +Y + +  E D+    +++           M  AR LF+ M 
Sbjct: 35  LISKC---NSLRELMQIQAYAIKSHIE-DVSFVAKLINFCTESPTESSMSYARHLFEAMS 90

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           E ++V  N +  G     + LE F LF+++ E+     + TF ++++A A  + +  G+Q
Sbjct: 91  EPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQ 150

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LH  ++K+G  DNV+V   LI+MY++C  ++ A+ VFD + E   V +N +I GYA    
Sbjct: 151 LHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNR 210

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
             EAL L+ EM+   +K +  T   ++  C  L SL+  K  H    +H F   +  N+A
Sbjct: 211 PNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTA 270

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D ++K G ++DA  +F+KM  K+  +W+A+I  Y NHG+ E+++ +FE+M    ++P+
Sbjct: 271 LIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPD 330

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            +TFL +L+ACS +G  E G + F  M     I P   HY  M++LL   G L++A+  I
Sbjct: 331 EITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFI 390

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
              P   T  +W  LL AC  + NL+L +  +E+++ ++     +YV+L N+Y  + K +
Sbjct: 391 DKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWE 450

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
               + + ++ +    +P CS IEV    H F SGD     T +++R +D M+ E+   G
Sbjct: 451 YVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSG 510

Query: 613 YVPEEKTLL-PDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           YVP+   ++  ++++QE+ + L YHSEKLA+ FGL+NT   T +++V++ R+C DCHNA 
Sbjct: 511 YVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAA 570

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           KLI+++ GR++V RD  RFHHF+DG CSCGD+W
Sbjct: 571 KLISLIFGRKVVXRDVQRFHHFEDGKCSCGDFW 603



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 163/321 (50%), Gaps = 4/321 (1%)

Query: 109 RYREALELFEILE--FEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           R+   LE+F +     E G    + T+ +L+ AC   +++ E +++    +  G + ++Y
Sbjct: 106 RFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVY 165

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   ++ M+  C  +  AR +FD + E  +V  N +I G        EA  LF ++  ++
Sbjct: 166 VCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKY 225

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 T  +++ + A L  + +GK +H  A K  F   V V+ ALIDM++KCGS++DA 
Sbjct: 226 LKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAV 285

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +F++M  K T  W+ +I  YA HG +E+++ ++  MR   V+ D  TF  ++  C+   
Sbjct: 286 SIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTG 345

Query: 347 SLEHAKQAHAGLV-RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNAL 404
            +E  ++  + +V + G    I    ++VD  S  G +EDA    DK+ +    + W  L
Sbjct: 346 RVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRIL 405

Query: 405 IAGYGNHGRGEEAVELFEQML 425
           +A   +H   + A ++ E++ 
Sbjct: 406 LAACSSHNNLDLAEKVSERIF 426


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/564 (37%), Positives = 318/564 (56%), Gaps = 43/564 (7%)

Query: 176 VRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFA 235
           ++ G  + A  L   +    LV   M+ A    SGD   +  +F  + + F      TF 
Sbjct: 86  LKLGHQVHAHMLLRGLQPTALVGSKMV-AFYASSGDIDSSVSVFNGIGDYF------TFP 138

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-- 293
            ++++S  L  + +GK +H   L++G   +++V+ +LI +Y KCG I DA  VFD M+  
Sbjct: 139 FVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIR 198

Query: 294 -----------------------------EKTTVGWNTIIAGYALHGYSEEALDLYYEM- 323
                                         +  V W T+I+GY+  G +++AL L+ EM 
Sbjct: 199 DVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMV 258

Query: 324 -RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
             DSGV+ +  T   ++  C +L++LE  +Q H    R G   +     AL   Y+K G 
Sbjct: 259 KEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGS 318

Query: 383 IEDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
           + DAR+ FDK+    KN+I+WN +I  Y ++G G +AV  F +M+  G++P+ +TF  +L
Sbjct: 319 LVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLL 378

Query: 441 SACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTT 500
           S CS SGL + G + F  MS  + I PR  HYAC+ +LLGR G L EA  L+   P    
Sbjct: 379 SGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAG 438

Query: 501 KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560
            ++W +LL ACR + NLE+ + AA KL+ +EPE   NYV+L N+Y  +G+ +E  ++   
Sbjct: 439 PSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAI 498

Query: 561 LRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTL 620
           ++ +G +  P CSWIE+  + H+FL GD SH Q KEIY  ++ +  ++   GY P+   +
Sbjct: 499 VKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYV 558

Query: 621 LPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGR 679
           L D+ E+E+   L  HSEKLAVAFG++NT   T L++ ++ RIC DCH A+  I+ + GR
Sbjct: 559 LHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGR 618

Query: 680 EIVVRDASRFHHFKDGMCSCGDYW 703
           E++VRD +RFHHFK G CSCGDYW
Sbjct: 619 EVIVRDINRFHHFKGGCCSCGDYW 642



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 154/336 (45%), Gaps = 63/336 (18%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE- 190
           T+  ++ + + L S+   K V   +L  G + DLY+   +++++ +CG + DA ++FD  
Sbjct: 136 TFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNM 195

Query: 191 ------------------------------MPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
                                         MP RN+VS   +I+G   SG   +A  LF 
Sbjct: 196 TIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFD 255

Query: 221 DLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276
           ++ +E  D G R    T  +++ A A L  +  G+Q+H  A +MG   N  V  AL  MY
Sbjct: 256 EMVKE--DSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMY 313

Query: 277 SKCGSIEDAQGVFDEM--SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           +KCGS+ DA+  FD++  +EK  + WNT+I  YA +G+  +A+  + EM  +G++ D  T
Sbjct: 314 AKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDIT 373

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGF------------GLDIVANSALVDFYSKWGR 382
           F+ ++  C+           H+GLV  G                +   + + D   + GR
Sbjct: 374 FTGLLSGCS-----------HSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGR 422

Query: 383 IEDARHVFDKMLCKNVIS-WNALIAGYGNHGRGEEA 417
           + +A  +  +M      S W +L+A    H   E A
Sbjct: 423 LAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMA 458



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 107/237 (45%), Gaps = 42/237 (17%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           ++A + +   GL ++ +G Q+H+  L  G      V   ++  Y+  G I+ +  VF+ +
Sbjct: 72  SYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGI 131

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
                                                 D+FTF  +++    L S+   K
Sbjct: 132 G-------------------------------------DYFTFPFVLKSSVELLSVWMGK 154

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
             H  ++R G   D+   ++L+  Y K G I DA  VFD M  ++V SWNAL+AGY   G
Sbjct: 155 CVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSG 214

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR-DHKIKPR 468
             + A+ +FE+M       N V++  ++S  S+SGL+++   +F  M + D  ++P 
Sbjct: 215 CIDAALAIFERMPWR----NIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPN 267



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 42/201 (20%), Positives = 88/201 (43%), Gaps = 5/201 (2%)

Query: 111 REALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           ++AL LF E+++ + G      T  +++ AC  L ++   +++       G   +  +  
Sbjct: 248 QQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLI 307

Query: 170 RVLLMHVRCGMMIDARRLFDEM--PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            +  M+ +CG ++DAR  FD++   E+NL++ N +I      G  L+A   F ++ +   
Sbjct: 308 ALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGI 367

Query: 228 DCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                TF  ++   +   L+ VG K  +  +        V     + D+  + G + +A 
Sbjct: 368 QPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEAS 427

Query: 287 GVFDEMSEKTTVG-WNTIIAG 306
            +  EM        W +++A 
Sbjct: 428 KLVGEMPMPAGPSIWGSLLAA 448


>gi|449436862|ref|XP_004136211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
 gi|449508034|ref|XP_004163198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Cucumis sativus]
          Length = 606

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/578 (34%), Positives = 341/578 (58%), Gaps = 13/578 (2%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM-----MIDARRL 187
           Y  L+  C   +S+ E K+V   +L  G   D +  + VL     C +     M  A  +
Sbjct: 35  YLCLVKKC---KSLEEFKQVHVQILKFGLFLDSFCSSSVL---ATCALSDWNSMDYACSI 88

Query: 188 FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI 247
           F ++ E      N +I G +++ ++  A  L+ D+ +   +  + T+  +++A A L +I
Sbjct: 89  FQQLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPDNFTYPVVLKACARLAVI 148

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
             G Q+H    K+G  D+V+V  +LI+MY KC  IE +  +F  M +K+   W+ IIA +
Sbjct: 149 QEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAH 208

Query: 308 ALHGYSEEALDLYYEMRDSGV-KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           A      E L L+ +M   G  + +      ++  CT L +    + AH  L+++   L+
Sbjct: 209 ASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELN 268

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +   ++L+D Y K G ++    +F  M  KN +S++ +I+G G HG G +A+++F +M+ 
Sbjct: 269 VAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMVE 328

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
            G+ P+ VT+++VLSACS SGL + G ++F  M  +++I+P   HY CM++L GR GLL+
Sbjct: 329 EGLEPDDVTYVSVLSACSHSGLVDEGLDLFDKMKFEYRIEPTMQHYGCMVDLKGRAGLLE 388

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546
           EAF L++  P K    +W +LL+AC+V+ NL+LG+ AAE L+ +     S+Y+VL N+Y 
Sbjct: 389 EAFQLVQSMPIKANDVLWRSLLSACKVHDNLKLGEIAAENLFRLSSHNPSDYLVLSNMYA 448

Query: 547 SSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMML 606
            + + + AA++   +  +GL   P  S +EVK + + F+S D+S+ ++  IY+ + +M  
Sbjct: 449 RAQQWENAAKIRTKMINRGLIQTPGYSLVEVKSKVYKFVSQDKSYCKSGNIYKMIHQMEW 508

Query: 607 EISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCD 665
           ++   GY+P+   ++ DVDE+E+   L  HS+KLA+AF LI+TS  + ++I+++ R+C D
Sbjct: 509 QLRFEGYMPDTSQVMLDVDEEEKGERLKGHSQKLAIAFALIHTSQGSAIRIIRNLRMCND 568

Query: 666 CHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           CH+  KL++M+  REI VRD +RFHHFKDG CSC DYW
Sbjct: 569 CHSYTKLVSMIYEREITVRDRNRFHHFKDGNCSCRDYW 606



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 91/350 (26%), Positives = 162/350 (46%), Gaps = 32/350 (9%)

Query: 89  QMKKPSA-GICSQIEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSI 146
           Q+ +P+     + I   V N  +  A+ L+ ++L+ E   D  + TY  ++ AC  L  I
Sbjct: 91  QLDEPTTFDFNTMIRGYVNNMNFENAIYLYNDMLQREVEPD--NFTYPVVLKACARLAVI 148

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
           +E  ++  ++   G E D+Y++N ++ M+ +C  +  +  +F  M ++++ S + IIA  
Sbjct: 149 QEGMQIHGHVFKLGLEDDVYVQNSLINMYGKCRDIEMSCAIFRRMEQKSVASWSAIIAAH 208

Query: 207 IDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
                + E   LF D+  E            ++ A   L    +G+  H   LK     N
Sbjct: 209 ASLAMWWECLALFEDMSREGCWRAEESILVNVLSACTHLGAFHLGRCAHGSLLKNITELN 268

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
           V V  +L+DMY KCGS++    +F  M+ K  + ++ II+G  LHGY  +AL ++ EM +
Sbjct: 269 VAVMTSLMDMYVKCGSLQKGLCLFQNMTRKNQLSYSVIISGLGLHGYGRQALQIFSEMVE 328

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL------------DIVANSAL 373
            G++ D  T+  ++  C+           H+GLV  G  L             +     +
Sbjct: 329 EGLEPDDVTYVSVLSACS-----------HSGLVDEGLDLFDKMKFEYRIEPTMQHYGCM 377

Query: 374 VDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAG---YGNHGRGEEAVE 419
           VD   + G +E+A  +   M  K N + W +L++    + N   GE A E
Sbjct: 378 VDLKGRAGLLEEAFQLVQSMPIKANDVLWRSLLSACKVHDNLKLGEIAAE 427


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/594 (34%), Positives = 339/594 (57%), Gaps = 5/594 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E LELF ++  E   D    T   + SAC  L + R  + V  Y++ + F  D+ M N +
Sbjct: 282 EGLELFSMMR-ELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSL 340

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+   G + +A  +F  M  +++VS   +IA ++      +A   +  +  E      
Sbjct: 341 IQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDE 400

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T  +++ A A +  + +G +LH  A+K G   +V VS +LIDMYSKC  +++A  VF  
Sbjct: 401 ITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRN 460

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           +S K  V W ++I G  ++  S EAL  + +M++S +K +  T   ++  C R+ +L   
Sbjct: 461 ISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPNSVTLISVLSACARIGALMRG 519

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K+ HA  +R G G D    +A++D Y + GR   A + F+    K+V +WN L+ GY   
Sbjct: 520 KEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQ 578

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G+ + AVELF++ML   + P+ +TF+++L ACS+SG+   G E F  M   + + P   H
Sbjct: 579 GQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKH 638

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           YAC++++LGR G LD+A+  I+  P +    +W ALL ACR++ N+ELG+ AA++++  +
Sbjct: 639 YACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKD 698

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
            + +  Y++L N+Y   G   + ++V   +R +GL   P CSW+E+K + H FLSGD SH
Sbjct: 699 NKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSH 758

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDW 651
            Q+KEI   +D    ++ ++G+   + +   +++     +   HSE+ A+AFGLINT+  
Sbjct: 759 SQSKEINGVLDGFCSKMKENGFGNLKSSFTSEIESSRADIFCGHSERQAIAFGLINTAPG 818

Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD--YW 703
            P+ + ++  +C  CHN +K I+ +  REI VRD   +HHFKDG+CSCGD  YW
Sbjct: 819 MPIWVTKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSCGDEGYW 872



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 155/549 (28%), Positives = 271/549 (49%), Gaps = 39/549 (7%)

Query: 100 QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           ++ +L L     +A++  E +  E   +V    Y AL+  C   R+  E  RV+  + S+
Sbjct: 68  ELRELCLQGNLEQAMKRLESM-LELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSS 126

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
                + + N +L M VR G ++DA  +F +M ER++ S N+++ G   +G + EA  L+
Sbjct: 127 KSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLY 186

Query: 220 LD-LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
              LW E       TF ++++  AG+  I+ GK++H+  ++ GF  +V V  ALI MY K
Sbjct: 187 HRMLWAEIRP-NVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVK 245

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG I +A+ +FD+M ++  + WN +I+GY  +G   E L+L+  MR+  V  D  T + +
Sbjct: 246 CGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTV 305

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
              C  L +    +  H  +V+  FG DI  N++L+  YS  GR+E+A  VF +M  K+V
Sbjct: 306 ASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDV 365

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SW A+IA   +H    +AVE ++ M L G+ P+ +T ++VLSAC+  G  + G  + + 
Sbjct: 366 VSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHE- 424

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG-NL 517
           ++    +    +    +I++  +   +D A  + R    K   + W +L+   R+N  + 
Sbjct: 425 IAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVS-WTSLILGLRINNRSF 483

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS---GKLKEAAEVIRTLRRKGL-------- 566
           E   F  +    M+P    N V L+++ ++    G L    E+     R G+        
Sbjct: 484 EALLFFRQMKESMKP----NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN 539

Query: 567 ----------RMLPACSWIEVKKQP----HVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
                     R +PA +    +K+     ++ L+G     Q K      D+ MLE+  H 
Sbjct: 540 AILDMYVRCGRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDK-MLELEIH- 597

Query: 613 YVPEEKTLL 621
             P+E T +
Sbjct: 598 --PDEITFI 604



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 130/442 (29%), Positives = 219/442 (49%), Gaps = 21/442 (4%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+ +++  C G+  I   K + ++++  GFE D+ + N ++ M+V+CG + +AR LFD+M
Sbjct: 200 TFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKM 259

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P+R+ +S N +I+G  ++G  LE   LF  + E   D    T  T+  A   L+   +G+
Sbjct: 260 PKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGR 319

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            +H   +K  FG ++ ++ +LI MYS  G +E+A+ VF  M  K  V W  +IA    H 
Sbjct: 320 GVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHK 379

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
              +A++ Y  M   G+  D  T   ++  C  +  L+   + H   ++ G    ++ ++
Sbjct: 380 LPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSN 439

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           +L+D YSK   +++A  VF  +  KNV+SW +LI G   + R  EA+  F QM    M+P
Sbjct: 440 SLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKP 498

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           N VT ++VLSAC+R G   RG E          I   A+      +      +LD     
Sbjct: 499 NSVTLISVLSACARIGALMRGKE----------IHAHALRTGVGFDGFLPNAILDMYVRC 548

Query: 492 IRGAP----FKTTK---NMWAALLTACRVNGNLELGKFAAEKLYGME--PEKLSNYVVLL 542
            R  P    F + K     W  LLT     G  +L     +K+  +E  P++++ ++ LL
Sbjct: 549 GRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEIT-FISLL 607

Query: 543 NIYNSSGKLKEAAEVIRTLRRK 564
              + SG + E  E    ++ K
Sbjct: 608 CACSKSGMVTEGLEYFNIMKNK 629


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/625 (35%), Positives = 349/625 (55%), Gaps = 33/625 (5%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           ++A++LF  +  +      S T   +ISAC  L  +   ++V++++ ++G E +  M + 
Sbjct: 217 KDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSA 276

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ M+++C  +  A+RLFDE    NL  CN + +  +  G   EA  +F  + +      
Sbjct: 277 LVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPD 336

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             +  + I + + L  I  GK  H   L+ GF     +  ALIDMY KC   + A  +FD
Sbjct: 337 RISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFD 396

Query: 291 EMSEKTTVGWNTIIAGYALHG-------------------------------YSEEALDL 319
            MS KT V WN+I+AGY  +G                                 EEA+++
Sbjct: 397 RMSNKTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEV 456

Query: 320 YYEMRDS-GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378
           +  M+   GV  D  T   I   C  L +L+ AK  +  + ++G  LD+   + LVD +S
Sbjct: 457 FCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFS 516

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
           + G  E A  +F+ +  ++V +W A I      G  E A+ELF+ M+  G++P+ V F+ 
Sbjct: 517 RCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVG 576

Query: 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK 498
            L+ACS  GL ++G EIF SM + H + P  +HY CM++LLGR GLL+EA  LI   P +
Sbjct: 577 ALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPME 636

Query: 499 TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVI 558
               +W +LL ACRV GN+E+  +AAEK+  + PE+  +YV+L N+Y S+G+  + A+V 
Sbjct: 637 PNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVR 696

Query: 559 RTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEK 618
            +++ KGLR  P  S I+++ + H F SGD+SH +   I   +D +    S  G+VP+  
Sbjct: 697 LSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLS 756

Query: 619 TLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVT 677
            +L DVDE+E+  +LS HSEKLA+A+GLI+++  T ++IV++ R+C DCH+  K  + V 
Sbjct: 757 NVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVY 816

Query: 678 GREIVVRDASRFHHFKDGMCSCGDY 702
            REI++RD +RFH+ + G CSCGD+
Sbjct: 817 NREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/379 (30%), Positives = 186/379 (49%), Gaps = 8/379 (2%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA+ LF +     G      T+   +SAC   R+     ++   ++  G+  DL+++N +
Sbjct: 117 EAILLF-LRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSL 175

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW-EEFSDCG 230
           +  +  CG +  AR++FDEM ERN+VS   +I G        +A  LF  +  +E     
Sbjct: 176 VHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPN 235

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           S T   +I A A LE +  G+++++     G   N  +  AL+DMY KC +I+ A+ +FD
Sbjct: 236 SVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFD 295

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           E         N + + Y   G + EAL ++  M DSGV+ D  +    I  C++L ++  
Sbjct: 296 EYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILW 355

Query: 351 AKQAHAGLVRHGF-GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
            K  H  ++R+GF   D + N AL+D Y K  R + A  +FD+M  K V++WN+++AGY 
Sbjct: 356 GKSCHGYVLRNGFESWDNICN-ALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYV 414

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            +G  + A E FE M       N V++  ++S   +  L E   E+F SM     +    
Sbjct: 415 ENGEVDAAWETFETM----PEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADG 470

Query: 470 MHYACMIELLGREGLLDEA 488
           +    +    G  G LD A
Sbjct: 471 VTMMSIASACGHLGALDLA 489



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 137/247 (55%), Gaps = 1/247 (0%)

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK 259
           N +I G   SG   EA LLFL +          TF   + A A       G Q+H   +K
Sbjct: 103 NSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVK 162

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDL 319
           MG+  ++FV  +L+  Y++CG ++ A+ VFDEMSE+  V W ++I GYA   ++++A+DL
Sbjct: 163 MGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDL 222

Query: 320 YYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378
           ++ M RD  V  +  T   +I  C +L  LE  ++ +A +   G  ++ +  SALVD Y 
Sbjct: 223 FFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYM 282

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
           K   I+ A+ +FD+    N+   NA+ + Y   G   EA+ +F  M+ +G+RP+ ++ L+
Sbjct: 283 KCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLS 342

Query: 439 VLSACSR 445
            +S+CS+
Sbjct: 343 AISSCSQ 349



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 130/243 (53%), Gaps = 6/243 (2%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED---AQGVFDEM-SEKTTVGWNTIIAG 306
           K  H    K G  ++V     L+    + G+ E    A+ VF+   S  T   +N++I G
Sbjct: 49  KMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRG 108

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           YA  G   EA+ L+  M +SG+  D +TF   +  C +  +  +  Q H  +V+ G+  D
Sbjct: 109 YASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKD 168

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +   ++LV FY++ G ++ AR VFD+M  +NV+SW ++I GY      ++AV+LF +M+ 
Sbjct: 169 LFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVR 228

Query: 427 N-GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
           +  + PN VT + V+SAC++    E G +++ +  R+  I+   +  + ++++  +   +
Sbjct: 229 DEEVTPNSVTMVCVISACAKLEDLETGEKVY-AFIRNSGIEVNDLMVSALVDMYMKCNAI 287

Query: 486 DEA 488
           D A
Sbjct: 288 DVA 290



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 105/219 (47%), Gaps = 4/219 (1%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I  LV    + EA+E+F  ++ + G +    T  ++ SAC  L ++   K ++ Y+   G
Sbjct: 441 ISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNG 500

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            + D+ +   ++ M  RCG    A  +F+ +  R++ +    I  M  +G+   A  LF 
Sbjct: 501 IQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFD 560

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM-GFG-DNVFVSCALIDMYSK 278
           D+ E+        F   + A +   L+  GK++    LK+ G   ++V   C ++D+  +
Sbjct: 561 DMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYGC-MVDLLGR 619

Query: 279 CGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEA 316
            G +E+A  + ++M  E   V WN+++A   + G  E A
Sbjct: 620 AGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMA 658


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/604 (34%), Positives = 338/604 (55%), Gaps = 42/604 (6%)

Query: 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC--GMMIDARRLFDEMPER 194
           +S+C   ++++++ ++ +  ++TG   D ++ +R+L        G +  AR LF  + + 
Sbjct: 42  LSSC---KTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKP 98

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE---FSDCGSRTFATMIRASAGLELISVGK 251
           ++   N +I     S + ++A + + ++ E    F D    TF  +++A + +  + +G+
Sbjct: 99  DIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDV--HTFPLLLKACSEIPSLRLGE 156

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY---- 307
            +HS   K+G+   V VS  L+ MY+ CG IE A  VFD   E     WN +I GY    
Sbjct: 157 AIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCG 216

Query: 308 ----------------------ALHGYSEEA-----LDLYYEMRDSGVKMDHFTFSMIIR 340
                                  ++GY +E+     L L+ +M    ++ +       + 
Sbjct: 217 VFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALS 276

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C  L ++E  +     + R    L +   +AL+D YSK G +E A  VF KM  KNV++
Sbjct: 277 ACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLA 336

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           W+A+I G   +G+G++A+ LF QM + G++PN VTF+ +L+ACS S L + G   F SM+
Sbjct: 337 WSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMT 396

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
             + +KP A H+ CM++L GR G+LD+A  +I+  PFK    +W ALL ACR++G+ ELG
Sbjct: 397 SIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELG 456

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
           +   ++L  ++P     YV+L NIY + G+    AE+ R +R + +   P CS+I++   
Sbjct: 457 EQVGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDT 516

Query: 581 PHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKL 639
            H F++GD SH Q + IY K+  M  E+   GY P+   +L D+DE+E+   L +HSEKL
Sbjct: 517 IHEFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKL 576

Query: 640 AVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSC 699
           A+AFGLI T   T ++I ++ R+C DCH+A KLI+ +  REI+VRD  RFHHF+DG CSC
Sbjct: 577 AIAFGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSC 636

Query: 700 GDYW 703
            D+W
Sbjct: 637 MDFW 640



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 163/351 (46%), Gaps = 39/351 (11%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM----------- 180
           T+  L+ AC  + S+R  + + S++   G+  ++ + N ++ M+  CG+           
Sbjct: 138 TFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRT 197

Query: 181 ----------MI----------DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
                     MI           ARR+F+ MP+R++VS +++I G +    + E   LF 
Sbjct: 198 PECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQ 257

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           D+  E  +         + A A L  +  G+ +     +      V +  ALIDMYSKCG
Sbjct: 258 DMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCG 317

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           S+E A  VF +M EK  + W+ +I G A++G  ++AL+L+ +M   GVK +  TF  I+ 
Sbjct: 318 SVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILN 377

Query: 341 ICTRLASL-EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NV 398
            C+    + E     H+    +G   +   +  +VD Y + G ++ A+ V   M  K N 
Sbjct: 378 ACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNS 437

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH----VTFLAVLSACSR 445
             W AL+     HG  E   ++ +++L   + PNH    V    + +AC R
Sbjct: 438 AIWGALLNACRIHGDTELGEQVGKRLL--ELDPNHGGRYVLLSNIYAACGR 486


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/562 (37%), Positives = 328/562 (58%), Gaps = 20/562 (3%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLM--HVRCGMMIDARRLFDEMPERNLVSCNMI 202
           ++ E++++   ML TG   D    +++L        G +  AR +FD +   N    N +
Sbjct: 30  NMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTM 89

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           I G  +S +  EA LL+  +        + TF  +++A + +  +   +Q+H+  +KMGF
Sbjct: 90  IRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGF 149

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
           G  ++ + +L+++YSK G I+ A+ +FD++ ++ T                 EAL+L++ 
Sbjct: 150 GSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDT-----------------EALNLFHR 192

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M+ +G+K+D+      ++ C  L  L+  K  HA + +H   +D +    L+D Y+K G 
Sbjct: 193 MQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGD 252

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           +E+A  VF KM  K V  W A+I+GY  HGRG EA+E F +M   G+ PN +TF  +L+A
Sbjct: 253 LEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTA 312

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
           CS +GL      +F+SM R H  KP   HY CM++LLGR GLL EA  LI   P K    
Sbjct: 313 CSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAA 372

Query: 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           +W ALL AC ++GNLELGK   + L  ++P     Y+ L +I+ ++G+  +AA V R ++
Sbjct: 373 IWGALLNACHIHGNLELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMK 432

Query: 563 RKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLP 622
            +G+  LP CS I V    H FL+GD+SH Q KEI   +++++  + + GY P+   LL 
Sbjct: 433 EQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLL 492

Query: 623 DVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREI 681
           D++++E+   + +HSEKLAV FGLI+T     ++IV++ R+C DCH  IKLI+ V  REI
Sbjct: 493 DLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREI 552

Query: 682 VVRDASRFHHFKDGMCSCGDYW 703
           ++RD +RFH FKDG C+CGDYW
Sbjct: 553 LMRDRTRFHLFKDGNCTCGDYW 574



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 162/331 (48%), Gaps = 26/331 (7%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           +K   EAL L+  + +       + T+  L+ AC  + ++ E +++ ++++  GF  ++Y
Sbjct: 96  SKEPEEALLLYHHMLYHS-VPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIY 154

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
             N +L ++ + G +  AR LFD++ +R+                  EA  LF  +    
Sbjct: 155 TTNSLLNVYSKSGDIKSARLLFDQVDQRD-----------------TEALNLFHRMQTAG 197

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
               +    + ++A A L ++  GK +H+   K     +  + C LIDMY+KCG +E+A 
Sbjct: 198 IKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAI 257

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VF +M EK    W  +I+GYA+HG   EAL+ + +M+ +GV+ +  TF+ I+  C+   
Sbjct: 258 EVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAG 317

Query: 347 SLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNAL 404
            +  AK     + R HGF   I     +VD   + G +++A  + + M  K N   W AL
Sbjct: 318 LVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGAL 377

Query: 405 IAGYGNHGRGEEAVELFEQM--LLNGMRPNH 433
           +     HG     +EL +Q+  +L  + P H
Sbjct: 378 LNACHIHGN----LELGKQIGKILIQVDPGH 404


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/590 (36%), Positives = 343/590 (58%), Gaps = 15/590 (2%)

Query: 122 FEGGFDVGSSTYDALISACIGLRSIR--EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG 179
           F    D   S+  A + +C+ +   R    K V S     GF  D     +++  ++R G
Sbjct: 26  FVHSLDANVSSLIAAVKSCVSIELCRLLHCKVVKSVSYRHGFIGD-----QLVGCYLRLG 80

Query: 180 MMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFA 235
             + A +LFDEMPER+LVS N +I+G    G   + F +   +    S+ G R    TF 
Sbjct: 81  HDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMM--ISEVGFRPNEVTFL 138

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
           +MI A         G+ +H   +K G  + V V  A I+ Y K G +  +  +F+++S K
Sbjct: 139 SMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIK 198

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             V WNT+I  +  +G +E+ L  +   R  G + D  TF  ++R C  +  +  A+  H
Sbjct: 199 NLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIH 258

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
             ++  GF  +    +AL+D YSK GR+ED+  VF ++   + ++W A++A Y  HG G 
Sbjct: 259 GLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGR 318

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
           +A++ FE M+  G+ P+HVTF  +L+ACS SGL E G   F++MS+ ++I PR  HY+CM
Sbjct: 319 DAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCM 378

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535
           ++LLGR GLL +A+ LI+  P + +  +W ALL ACRV  + +LG  AAE+L+ +EP   
Sbjct: 379 VDLLGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDG 438

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTK 595
            NYV+L NIY++SG  K+A+ +   +++KGL     CS+IE   + H F+ GD SH +++
Sbjct: 439 RNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESE 498

Query: 596 EIYRKVDRMMLEI-SKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTP 653
           +I +K+  +  ++ S+ GY  + + +L DV E  ++ +++ HSEK+A+AFGL+  S   P
Sbjct: 499 KIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEP 558

Query: 654 LQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + I ++ RIC DCH   K I+++  R I++RD+ RFHHF DG CSC DYW
Sbjct: 559 IIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/602 (34%), Positives = 347/602 (57%), Gaps = 44/602 (7%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N  Y +AL +F  +   GGF     TY  ++ AC    ++R   ++   +   G + +L+
Sbjct: 111 NHLYDDALLVFRDM-VSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLF 169

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N ++ ++ +CG + +AR + DEM  +++VS N ++AG   +  + +A    LD+  E 
Sbjct: 170 VGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDA----LDICREM 225

Query: 227 SDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
                +    T A+++ A                       +NV                
Sbjct: 226 DGVRQKPDACTMASLLPAVTNTS-----------------SENVLY-------------- 254

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
              + +F  + +K+ V WN +I+ Y  +    +++DLY +M    V+ D  T + ++R C
Sbjct: 255 --VEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCASVLRAC 312

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
             L++L   ++ H  + R     +++  ++L+D Y++ G +EDA+ VFD+M  ++V SW 
Sbjct: 313 GDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDVASWT 372

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           +LI+ YG  G+G  AV LF +M  +G  P+ + F+A+LSACS SGL   G   F+ M+ D
Sbjct: 373 SLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYFKQMTDD 432

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
           +KI P   H+AC+++LLGR G +DEA+ +I+  P K  + +W ALL++CRV  N+++G  
Sbjct: 433 YKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSNMDIGIL 492

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPH 582
           AA+KL  + PE+   YV+L NIY  +G+  E   +   ++R+ +R +P  S +E+  Q H
Sbjct: 493 AADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVELNNQVH 552

Query: 583 VFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAV 641
            FL+GD  H Q+KEIY ++  ++ ++ + GYVP+  + L DV+E+++   L+ HSEKLA+
Sbjct: 553 TFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVHSEKLAI 612

Query: 642 AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
            F ++NT + +P++I ++ R+C DCH A KLI+ +  REIV+RD +RFHHFKDG+CSCGD
Sbjct: 613 VFAILNTQE-SPIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDGICSCGD 671

Query: 702 YW 703
           YW
Sbjct: 672 YW 673



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 106/200 (53%)

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           I   K +HS    + F +N  +   L+  Y+  G    A+ VFD + E+  + +N +I  
Sbjct: 48  IKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRS 107

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           Y  +   ++AL ++ +M   G   DH+T+  +++ C+   +L    Q H  + + G  L+
Sbjct: 108 YMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLN 167

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +   + L+  Y K G + +AR V D+M  K+V+SWN+++AGY  + + ++A+++  +M  
Sbjct: 168 LFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDG 227

Query: 427 NGMRPNHVTFLAVLSACSRS 446
              +P+  T  ++L A + +
Sbjct: 228 VRQKPDACTMASLLPAVTNT 247



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 5/125 (4%)

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
               ++ ++  +   ++  K  H+ +    F  +      L+  Y+  G    AR+VFD 
Sbjct: 33  LVLELLGKVLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDV 92

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS-----RSG 447
           +  +NVI +N +I  Y N+   ++A+ +F  M+  G  P+H T+  VL ACS     R G
Sbjct: 93  IPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIG 152

Query: 448 LSERG 452
           L   G
Sbjct: 153 LQLHG 157


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/594 (34%), Positives = 339/594 (57%), Gaps = 5/594 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E LELF ++  E   D    T   + SAC  L + R  + V  Y++ + F  D+ M N +
Sbjct: 282 EGLELFSMMR-ELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSL 340

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+   G + +A  +F  M  +++VS   +IA ++      +A   +  +  E      
Sbjct: 341 IQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDE 400

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T  +++ A A +  + +G +LH  A+K G   +V VS +LIDMYSKC  +++A  VF  
Sbjct: 401 ITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRN 460

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           +S K  V W ++I G  ++  S EAL  + +M++S +K +  T   ++  C R+ +L   
Sbjct: 461 ISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPNSVTLISVLSACARIGALMRG 519

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K+ HA  +R G G D    +A++D Y + GR   A + F+    K+V +WN L+ GY   
Sbjct: 520 KEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWNILLTGYAQQ 578

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G+ + AVELF++ML   + P+ +TF+++L ACS+SG+   G E F  M   + + P   H
Sbjct: 579 GQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKH 638

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           YAC++++LGR G LD+A+  I+  P +    +W ALL ACR++ N+ELG+ AA++++  +
Sbjct: 639 YACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKD 698

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
            + +  Y++L N+Y   G   + ++V   +R +GL   P CSW+E+K + H FLSGD SH
Sbjct: 699 NKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAFLSGDNSH 758

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDW 651
            Q+KEI   +D    ++ ++G+   + +   +++     +   HSE+ A+AFGLINT+  
Sbjct: 759 SQSKEINGVLDGFCSKMKENGFGNLKSSFTSEIESSRADIFCGHSERQAIAFGLINTAPG 818

Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD--YW 703
            P+ + ++  +C  CHN +K I+ +  REI VRD   +HHFKDG+CSCGD  YW
Sbjct: 819 MPIWVXKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSCGDEGYW 872



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 155/549 (28%), Positives = 271/549 (49%), Gaps = 39/549 (7%)

Query: 100 QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           ++ +L L     +A++  E +  E   +V    Y AL+  C   R+  E  RV+  + S+
Sbjct: 68  ELRELCLQGNLEQAMKRLESM-LELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSS 126

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
                + + N +L M VR G ++DA  +F +M ER++ S N+++ G   +G + EA  L+
Sbjct: 127 KSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLY 186

Query: 220 LD-LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
              LW E       TF ++++  AG+  I+ GK++H+  ++ GF  +V V  ALI MY K
Sbjct: 187 HRMLWAEIRP-NVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVK 245

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG I +A+ +FD+M ++  + WN +I+GY  +G   E L+L+  MR+  V  D  T + +
Sbjct: 246 CGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTV 305

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
              C  L +    +  H  +V+  FG DI  N++L+  YS  GR+E+A  VF +M  K+V
Sbjct: 306 ASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDV 365

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SW A+IA   +H    +AVE ++ M L G+ P+ +T ++VLSAC+  G  + G  + + 
Sbjct: 366 VSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHE- 424

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG-NL 517
           ++    +    +    +I++  +   +D A  + R    K   + W +L+   R+N  + 
Sbjct: 425 IAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVS-WTSLILGLRINNRSF 483

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS---GKLKEAAEVIRTLRRKGL-------- 566
           E   F  +    M+P    N V L+++ ++    G L    E+     R G+        
Sbjct: 484 EALLFFRQMKESMKP----NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN 539

Query: 567 ----------RMLPACSWIEVKKQP----HVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
                     R +PA +    +K+     ++ L+G     Q K      D+ MLE+  H 
Sbjct: 540 AILDMYVRCGRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDK-MLELEIH- 597

Query: 613 YVPEEKTLL 621
             P+E T +
Sbjct: 598 --PDEITFI 604



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 131/447 (29%), Positives = 220/447 (49%), Gaps = 31/447 (6%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+ +++  C G+  I   K + ++++  GFE D+ + N ++ M+V+CG + +AR LFD+M
Sbjct: 200 TFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKM 259

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P+R+ +S N +I+G  ++G  LE   LF  + E   D    T  T+  A   L+   +G+
Sbjct: 260 PKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGR 319

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            +H   +K  FG ++ ++ +LI MYS  G +E+A+ VF  M  K  V W  +IA    H 
Sbjct: 320 GVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHK 379

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
              +A++ Y  M   G+  D  T   ++  C  +  L+   + H   ++ G    ++ ++
Sbjct: 380 LPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSN 439

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           +L+D YSK   +++A  VF  +  KNV+SW +LI G   + R  EA+  F QM    M+P
Sbjct: 440 SLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKP 498

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF-- 489
           N VT ++VLSAC+R G   RG EI               H   +   +G +G L  A   
Sbjct: 499 NSVTLISVLSACARIGALMRGKEI---------------HAHALRTGVGFDGFLPNAILD 543

Query: 490 ----------ALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME--PEKLSN 537
                     AL +    K     W  LLT     G  +L     +K+  +E  P++++ 
Sbjct: 544 MYVRCGRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEIT- 602

Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           ++ LL   + SG + E  E    ++ K
Sbjct: 603 FISLLCACSKSGMVTEGLEYFNIMKNK 629


>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
          Length = 1009

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/596 (35%), Positives = 326/596 (54%), Gaps = 28/596 (4%)

Query: 130  SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
            ++ ++ +I+A +    + +   +   M   G++PD+   N +L  H R G+   A  L  
Sbjct: 420  TAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAXELLS 479

Query: 190  EMPE----RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR------------T 233
            EM +     N+VS N++I+G   SG   EA  +F  +      C               T
Sbjct: 480  EMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPIT 539

Query: 234  FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
                + A A L L   GK++H   L+ GF  N+FVS AL+DMY+KC  ++ A  VF  + 
Sbjct: 540  ITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRID 599

Query: 294  EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
             + TV WN ++AGY  +   EEAL L+ EM   G++    TF ++   C  +A++   + 
Sbjct: 600  GRNTVSWNALMAGYINNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRG 659

Query: 354  AHAGLVRHGFGLDIVAN---SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
             H    +    LD + N   SAL+D Y+K G I DA+ VFD  + K+V  WNA+I+ +  
Sbjct: 660  LHGYAAK--CQLDELKNAIXSALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSV 717

Query: 411  HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
            HG    A  +F QM L G+ P+H+TF+++LSAC+R GL E GW+ F SM   + +     
Sbjct: 718  HGMARNAFAVFXQMELLGIXPDHITFVSLLSACARDGLVEEGWKYFNSMEISYGVAATLE 777

Query: 471  HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
            HY CM+ +LG  GLLDEA   IR  P+     MWA LL ACRV+ N E+G+ AA+ L+ +
Sbjct: 778  HYTCMVGILGGAGLLDEALDFIRQMPYPPDACMWATLLQACRVHSNPEIGERAAKALFEL 837

Query: 531  EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
            EP+  +NY++L NIY SSG    A  +   +R + L  +  CS++ V      F  G+ S
Sbjct: 838  EPDNATNYMLLSNIYVSSGMWDFAKNLRSFMRGRKLLTIKECSYLTVGSHXCTFKGGESS 897

Query: 591  HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY---HSEKLAVAFGLIN 647
            H + +EI    D +  ++   GY P    L P  D++E+ +  +   H+EKLA+ FG+I+
Sbjct: 898  HPELEEILETWDXLARKMELSGYFP----LDPVFDDEEKELDPFSCLHTEKLAICFGIIS 953

Query: 648  TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++ + P+ + ++ R+C DCH + KLI+ + GREI V+D   +HH KDG+C C D W
Sbjct: 954  SNXYRPVHVSKNIRMCIDCHTSAKLISKIDGREIFVKDVCFYHHMKDGICXCQDRW 1009



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 199/449 (44%), Gaps = 67/449 (14%)

Query: 75  IYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALE--LFE----ILEFEGGFDV 128
           +Y   L +  L  T +K  SA +  +I K+V     R+++E  +F     I  +    D+
Sbjct: 175 VYEGMLPDKYLVPTILKACSAMLLXRIGKMVHGFVIRKSVESDVFVGNALIHFYSNCGDL 234

Query: 129 GSS-------------TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMH 175
           GSS             ++ ALISA +      E K +F  M   G +PDL   + +L   
Sbjct: 235 GSSRSVFHSMQERDVVSWTALISAYMEEGLXDEAKHIFHLMQLDGVKPDLISWSALLSGF 294

Query: 176 VRCGMMIDARRLFDEMPERNLV----SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
            R G +  A    +EMPER L     S N II+G + +G   +A  +F  +     D   
Sbjct: 295 ARNGEIDLALETLEEMPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNI 354

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T A+++ A  GL+ + +GK +H  A K G   NV+V  ++IDMYSKCGS + A+ VF +
Sbjct: 355 ITIASILPACTGLKALRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFXK 414

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
              K T  WN +IA Y   G  E+AL L   M+  G K D  T++ I+    R      A
Sbjct: 415 AENKNTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQA 474

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
            +  + +V+ G                               L  NV+S+N LI+G+   
Sbjct: 475 XELLSEMVQMG-------------------------------LKPNVVSFNVLISGFQQS 503

Query: 412 GRGEEAVELFEQM-----------LLN-GMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           G   EA+++F  M           +LN  MRPN +T    L AC+   L  +G EI    
Sbjct: 504 GLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGYT 563

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEA 488
            R+   +P     + ++++  +   +D A
Sbjct: 564 LRN-GFEPNIFVSSALVDMYAKCHDMDSA 591



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 173/391 (44%), Gaps = 41/391 (10%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           ++++ E    F ++ +EG           ++ AC  +   R  K V  +++    E D++
Sbjct: 161 SEQWDELFSXFRLMVYEGMLP-DKYLVPTILKACSAMLLXRIGKMVHGFVIRKSVESDVF 219

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N ++  +  CG +  +R +F  M ER++VS   +I+  ++ G                
Sbjct: 220 VGNALIHFYSNCGDLGSSRSVFHSMQERDVVSWTALISAYMEEG---------------L 264

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            D     F  M       +LIS                      AL+  +++ G I+ A 
Sbjct: 265 XDEAKHIFHLMQLDGVKPDLISWS--------------------ALLSGFARNGEIDLAL 304

Query: 287 GVFDEMSEK----TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
              +EM E+    T   WN II+G   +GY E+ALD++  M       +  T + I+  C
Sbjct: 305 ETLEEMPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPAC 364

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
           T L +L   K  H    +HG   ++    +++D YSK G  + A  VF K   KN   WN
Sbjct: 365 TGLKALRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFXKAENKNTAMWN 424

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
            +IA Y N G+ E+A+ L   M  +G +P+ +T+  +LS  +R+GL  +  E+   M + 
Sbjct: 425 EMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAXELLSEMVQ- 483

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIR 493
             +KP  + +  +I    + GL  EA  + R
Sbjct: 484 MGLKPNVVSFNVLISGFQQSGLSYEALKVFR 514



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 178/388 (45%), Gaps = 38/388 (9%)

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
           DAR+L DE+P R + +   +I     S  + E F  F  +  E          T+++A +
Sbjct: 135 DARKLLDEIPNRTVPAYAALIRSYCRSEQWDELFSXFRLMVYEGMLPDKYLVPTILKACS 194

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
            + L  +GK +H   ++     +VFV  ALI  YS CG +  ++ VF  M E+  V W  
Sbjct: 195 AMLLXRIGKMVHGFVIRKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQERDVVSWTA 254

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I+ Y   G  +EA  +++ M+  GVK D  ++S ++                +G  R+G
Sbjct: 255 LISAYMEEGLXDEAKHIFHLMQLDGVKPDLISWSALL----------------SGFARNG 298

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
             +D+               +E    + ++ L   V SWN +I+G   +G  E+A+++F 
Sbjct: 299 -EIDLA--------------LETLEEMPERGLQPTVNSWNGIISGCVQNGYLEDALDMFS 343

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSE-RGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
           +ML     PN +T  ++L AC  +GL   R  +    ++  H I         +I++  +
Sbjct: 344 RMLWYPEDPNIITIASILPAC--TGLKALRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSK 401

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYV 539
            G  D A  +   A  K T  MW  ++ A    G +E  LG   + +  G +P+ ++ Y 
Sbjct: 402 CGSYDYAEKVFXKAENKNTA-MWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVIT-YN 459

Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
            +L+ +  +G   +A E++  + + GL+
Sbjct: 460 TILSGHARNGLKTQAXELLSEMVQMGLK 487



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/309 (25%), Positives = 143/309 (46%), Gaps = 10/309 (3%)

Query: 222 LWEEFSDCGSRTFATMIRASAGL----ELISVGKQLHSCALKM-GFGDNVFVSCALIDMY 276
           L   F D  + +  T I  S  L      +S  +Q+H+  +K+        +   L+ +Y
Sbjct: 67  LLPSFVDTLTNSSPTEISDSISLLNRCSTLSEFRQIHARVVKLNALKWKSSIGNKLVVLY 126

Query: 277 SKCG-SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
            K   S+EDA+ + DE+  +T   +  +I  Y      +E    +  M   G+  D +  
Sbjct: 127 CKNQWSLEDARKLLDEIPNRTVPAYAALIRSYCRSEQWDELFSXFRLMVYEGMLPDKYLV 186

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
             I++ C+ +      K  H  ++R     D+   +AL+ FYS  G +  +R VF  M  
Sbjct: 187 PTILKACSAMLLXRIGKMVHGFVIRKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQE 246

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           ++V+SW ALI+ Y   G  +EA  +F  M L+G++P+ +++ A+LS  +R+G  +   E 
Sbjct: 247 RDVVSWTALISAYMEEGLXDEAKHIFHLMQLDGVKPDLISWSALLSGFARNGEIDLALET 306

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEA---FALIRGAPFKTTKNMWAALLTACR 512
            + M  +  ++P    +  +I    + G L++A   F+ +   P        A++L AC 
Sbjct: 307 LEEMP-ERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACT 365

Query: 513 VNGNLELGK 521
               L LGK
Sbjct: 366 GLKALRLGK 374


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/593 (34%), Positives = 330/593 (55%), Gaps = 1/593 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E L+LF+ + F             +  +C     I E K+     L +G     ++RN +
Sbjct: 118 EVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGRIEEGKQFHGCFLKSGLMSHEFVRNTL 177

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+  C    +A R+ D++P  +L   +  ++G ++ G + E   +   + +E     +
Sbjct: 178 VYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGAEVLRRMAKEDLVLDN 237

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T+ + +R  + L  +++ +Q+HS  +++GF   V  S A+I+MY KCG +  AQ VFD 
Sbjct: 238 ITYLSCLRLCSNLRDLNLARQIHSRMVRLGFNSEVEASGAIINMYGKCGKVLYAQRVFDN 297

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
              +  V   TI+  Y      EEAL+L+ +M    V  + +TF++ +     L+ L+H 
Sbjct: 298 THAQNIVLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAISLNSIAELSLLKHG 357

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
              H  +++ G+   ++  +ALV+ Y+K G IEDAR  F  M  +++++WN +I G+ +H
Sbjct: 358 DLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMICGFSHH 417

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G G E +E F++M++ G  PN +TF+ VL ACS  G  E+G   F  + +   ++P   H
Sbjct: 418 GLGREGLEAFDRMMIAGEIPNRITFIGVLQACSHVGFVEQGLYYFNQLMKKFNVQPDLQH 477

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           Y C++ LL + G+  +A   +R AP +     W ALL AC V  N  LGK  AE      
Sbjct: 478 YTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRALLNACYVRRNFRLGKKVAEYAIYKY 537

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P     YV+L NI+  S + +  AEV   + ++G++  P  SWI ++ Q HVFL+ +  H
Sbjct: 538 PNDSGVYVLLSNIHAKSREWEGVAEVRSLMNKRGVKKEPGVSWIGIRNQTHVFLAEENQH 597

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSD 650
            +   IY K+  ++ +I   GY P+   +  DVD EQ +  LSYHSEKLAVA+GL+ T +
Sbjct: 598 PEITLIYAKIKEVLSKIRPLGYSPDVAGVFHDVDEEQREDNLSYHSEKLAVAYGLMKTPE 657

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            +PL + ++ RIC DCH+AIKLI+ ++ R IV+RD++RFHHF+DG CSC DYW
Sbjct: 658 NSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNRFHHFRDGQCSCCDYW 710



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 98/233 (42%), Gaps = 40/233 (17%)

Query: 338 IIRICTRLASLEHAKQAHAGLV---RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           ++++C   + L   +  H  L+   +     D+   ++L++ Y K G    AR VFD M 
Sbjct: 37  LLKVCANSSYLRTGESIHGHLIVTNQSSRAKDVYQINSLINLYVKCGETVRARKVFDLMP 96

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGLSERGW 453
            +NV+SW A++ GY N G   E ++LF+ M+ +   RPN      V  +CS SG  E G 
Sbjct: 97  ERNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGRIEEGK 156

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           +                 + C +    + GL+   F           +N    + + C  
Sbjct: 157 QF----------------HGCFL----KSGLMSHEF----------VRNTLVYMYSLCSG 186

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           NG       A   L  +    LS +   L+ Y   G  KE AEV+R + ++ L
Sbjct: 187 NGE------AIRVLDDLPYCDLSVFSSALSGYLECGAFKEGAEVLRRMAKEDL 233


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/627 (34%), Positives = 343/627 (54%), Gaps = 40/627 (6%)

Query: 82  ESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSS-TYDALISAC 140
           ESS PD + +  +      I  L  +  +R+AL LF  +   G        TY   + +C
Sbjct: 74  ESSSPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSC 133

Query: 141 IGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCN 200
              + +    ++ S +     + ++Y+ +  + M+ RCG   DA R+FD MP R++VS N
Sbjct: 134 SASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWN 193

Query: 201 MIIAGMIDSGDY---LEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257
            +IAG    G +   +E F  F+ L     D G  T A ++ A                 
Sbjct: 194 AMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAG--TMAGILPA----------------- 234

Query: 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL 317
             MG               +K   I   + VFD M  K  + WN ++A YA + +  +A+
Sbjct: 235 --MG--------------NAKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAV 278

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
           +L+  M    V+ D  T + ++  C  L++    K+ H  + R     +++  +AL+D Y
Sbjct: 279 ELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMY 338

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
           +  G ++DAR +FD M  ++VISW ++I+ YG HG G EAV+LFE+ML  G+ P+ + F+
Sbjct: 339 ASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFV 398

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
           AVL+ACS +GL   G   F SM+  + I P+A HY CM++LLGR G ++EA+  I     
Sbjct: 399 AVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLI 458

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
           +  + +W ALL ACR++ N+++G  AA+ L+ + PE+   YV+L N+Y  +G+  +   V
Sbjct: 459 EPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSV 518

Query: 558 IRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEE 617
              +  KG++  P  S +E+  Q H F  GD+ H Q++ IY K+D ++ +I   GY PE 
Sbjct: 519 RSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYNPEV 578

Query: 618 KTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMV 676
           +  L DV+E+++   LS HSEKLA+AF L+NTS  T +++  + R C DCH A KLI+++
Sbjct: 579 EATLHDVEEEDKEDHLSVHSEKLAIAFLLLNTSPGTIIRVTMNLRTCSDCHLAAKLISII 638

Query: 677 TGREIVVRDASRFHHFKDGMCSCGDYW 703
           T REIV++D +R HH   G+CSCGDYW
Sbjct: 639 TCREIVLKDTNRIHHIVQGVCSCGDYW 665



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 132/298 (44%), Gaps = 15/298 (5%)

Query: 272 LIDMYSKCGSIEDAQGVF-----DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
           LI  Y+ C ++  A  V      D  S  TTV +N +I          +AL L+  MR  
Sbjct: 56  LIQAYAACSALPLAHTVLESSSPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPR 115

Query: 327 GVKM--DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           G     DH+T+ + ++ C+    L    Q H+ + +     ++    + +  YS+ GR E
Sbjct: 116 GPACFPDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPE 175

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ-MLLNGMRPNHVTFLAVLSAC 443
           DA  VFD M  ++V+SWNA+IAG+   G  + A+E+F+Q ++L G  P+  T   +L A 
Sbjct: 176 DAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAM 235

Query: 444 SRSGLSERGW--EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
             +   +  +   +F +M     I   AM           + +  E F L+     +   
Sbjct: 236 GNAKPDDIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAV--ELFMLMEKDEVEPDS 293

Query: 502 NMWAALLTACRVNGNLELGKFAAE--KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
              A +L  C       +GK   E  K   M P  L     L+++Y S G LK+A E+
Sbjct: 294 ITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPNLLLEN-ALMDMYASCGCLKDAREI 350


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/541 (36%), Positives = 320/541 (59%), Gaps = 3/541 (0%)

Query: 166 YMRNRVLLM-HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           +M + +L+  +VR G ++ AR++FDEMP+R L + N +IAG+I      E   LF ++  
Sbjct: 25  FMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMHG 84

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                   T  ++   SAGL  +S+G+Q+H  A+K G   ++ V+ +L  MY + G ++D
Sbjct: 85  LGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQD 144

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
            + V   M  +  V WNT+I G A +G  E  L LY  M+ SG + +  TF  ++  C+ 
Sbjct: 145 GEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSD 204

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           LA     +Q HA  ++ G    +   S+L+  YSK G + DA   F +   ++ + W+++
Sbjct: 205 LAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSM 264

Query: 405 IAGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           I+ YG HG+G+EA++LF  M     M  N V FL +L ACS SGL ++G E+F  M   +
Sbjct: 265 ISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKY 324

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
             KP   HY C+++LLGR G LD+A A+I+  P K    +W  LL+AC ++ N E+ +  
Sbjct: 325 GFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKV 384

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
            +++  ++P   + YV+L N++ S+ + ++ +EV +++R K ++     SW E K + H 
Sbjct: 385 FKEILEIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQ 444

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVA 642
           F  GD+S  ++KEIY  +  + LE+   GY P+  ++L D+DE+E+   L  HSEKLAVA
Sbjct: 445 FKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVA 504

Query: 643 FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           F L+   +  P++I+++ R+C DCH A K I+++  REI +RD SRFHHF +G CSCGDY
Sbjct: 505 FALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIMNREITLRDGSRFHHFINGKCSCGDY 564

Query: 703 W 703
           W
Sbjct: 565 W 565



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 153/335 (45%), Gaps = 40/335 (11%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           N   S  LI+ Y + G +  A+ VFDEM ++    WN +IAG     Y+EE L L+ EM 
Sbjct: 24  NFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMH 83

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
             G   D +T   +      L S+   +Q H   +++G  LD+V NS+L   Y + G+++
Sbjct: 84  GLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQ 143

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           D   V   M  +N+++WN LI G   +G  E  + L++ M ++G RPN +TF+ VLS+CS
Sbjct: 144 DGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCS 203

Query: 445 RSGLSERGWEIFQSMSR------------------------------DHKIKPRAMHYAC 474
              +  +G +I     +                                +     + ++ 
Sbjct: 204 DLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSS 263

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNM----WAALLTACRVNG----NLELGKFAAEK 526
           MI   G  G  DEA  L      +T   +    +  LL AC  +G     LEL     EK
Sbjct: 264 MISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEK 323

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            YG +P  L +Y  ++++   +G L +A  +I+++
Sbjct: 324 -YGFKP-GLKHYTCVVDLLGRAGCLDQAEAIIKSM 356



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 185/391 (47%), Gaps = 16/391 (4%)

Query: 85  LPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEG-GFDVGSSTYDALISACIGL 143
           +PD ++   +A     I  L+  +   E L LF   E  G GF     T  ++ S   GL
Sbjct: 51  MPDRKLTTWNA----MIAGLIQFEYNEEGLSLFR--EMHGLGFSPDEYTLGSVFSGSAGL 104

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           RS+   +++  Y +  G E DL + + +  M++R G + D   +   MP RNLV+ N +I
Sbjct: 105 RSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLI 164

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSR--TFATMIRASAGLELISVGKQLHSCALKMG 261
            G   +G      +L+L    + S C     TF T++ + + L +   G+Q+H+ A+K+G
Sbjct: 165 MGNAQNG--CPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIG 222

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
               V V  +LI MYSKCG + DA   F E  ++  V W+++I+ Y  HG  +EA+ L+ 
Sbjct: 223 ASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFN 282

Query: 322 EMRD-SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV-RHGFGLDIVANSALVDFYSK 379
            M + + ++++   F  ++  C+     +   +    +V ++GF   +   + +VD   +
Sbjct: 283 SMAEQTEMEVNEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGR 342

Query: 380 WGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
            G ++ A  +   M  K + + W  L++    H   E A ++F+++L   + PN      
Sbjct: 343 AGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEIL--EIDPNDSACYV 400

Query: 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
           +L+    S    R     +   RD  +K  A
Sbjct: 401 LLANVHASAKRWRDVSEVRKSMRDKNVKKEA 431


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/598 (36%), Positives = 340/598 (56%), Gaps = 12/598 (2%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +A+ELF +   E GF+    T  +++SAC    S    +++ S +L  G   D  +   +
Sbjct: 232 KAVELF-LGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGL 290

Query: 172 LLMHVRCGM---MIDARRLFDEMPERNLVSCNMIIAGMID-SGDYLEAFLLFLDLWEEFS 227
           + M+ +  M   M  AR++F  MP  N++S   +I+G +   G    A  L  ++  E  
Sbjct: 291 VDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESI 350

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
           +    T++++++A A L     G+Q+H+  +K   G+   V  AL+ MY++ G +E+A+ 
Sbjct: 351 EPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARK 410

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
            FD++ E+  +  ++ I      G S  +     E  D GV    FTF+ ++     +  
Sbjct: 411 AFDQLYERNLLSTSSDIGET---GRSNASWSSQIESMDVGVST--FTFASLLSAAATVGL 465

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIA 406
               +Q HA  ++ GF  D   +++LV  YS+ G ++DA   FD+M    NVISW ++I+
Sbjct: 466 PTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIIS 525

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
               HG  E A+ LF  M+L+G++PN VT++AVLSACS  GL + G E F+SM +DH++ 
Sbjct: 526 ALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLI 585

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           PR  HYACM++LL R GL+ EA   I   P K    +W  LL ACR   N+E+G+ AA  
Sbjct: 586 PRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYENIEIGEIAARH 645

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           +  +EP+  + YV+L N+Y   G   E A +   +R + L      SW+ V    H F +
Sbjct: 646 VIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTIHEFRA 705

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGL 645
           GD SH + +EIY K+  ++ EI   GYVP+   +L D+ D+ +++ L  HSEK+AVAFGL
Sbjct: 706 GDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMSDKLKEQCLLQHSEKIAVAFGL 765

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I T    P++I ++ R+C DCH+AIK I+  TGREI++RD++RFH  KDG CSCG+YW
Sbjct: 766 ITTLPTKPIRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGKCSCGEYW 823



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 158/302 (52%), Gaps = 7/302 (2%)

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE-RNLVSCNMIIAGMIDSGDYLEAFLLF 219
            + D  + N +L M+ +CG +  ARR+FD M   R+LVS   +   +  +G   EA +L 
Sbjct: 75  LDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLL 134

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELI-SVGKQLHSCALKMGF-GDNVFVSCALIDMYS 277
            ++ E      + T      A    EL  S G  +   A+K GF G +V V CALIDM++
Sbjct: 135 GEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFA 194

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           + G +  A+ VF+ + E+T V W  +I  Y   G + +A++L+  M + G + D +T S 
Sbjct: 195 RNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSS 254

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW---GRIEDARHVFDKML 394
           ++  C    S    +Q H+ ++R G   D   +  LVD Y+K      +E AR VF +M 
Sbjct: 255 MVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMP 314

Query: 395 CKNVISWNALIAGYGNHGRGE-EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             NV+SW ALI+GY   G  E  AVEL  +ML   + PNH+T+ ++L AC+     + G 
Sbjct: 315 THNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGR 374

Query: 454 EI 455
           +I
Sbjct: 375 QI 376


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/476 (39%), Positives = 295/476 (61%), Gaps = 5/476 (1%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC----GSIEDAQGV 288
           T+  +++A AG+  +++GK +H   +K GFGD V V   L+ MY  C    G IE A+ V
Sbjct: 12  TYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARKV 71

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FDEM +  +V W+ +I GY   G S +A++L+ EM+  GV  D  T   ++  CT L +L
Sbjct: 72  FDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGAL 131

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
           E  K   + + +     ++  ++AL+D ++K G ++ A ++F  M  +N++SW ++I G 
Sbjct: 132 ELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGL 191

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
             HGRG EAV +FE+M+ +G+ P+ V F+ +LSACS SGL ++G   F SM +D  I P+
Sbjct: 192 AMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPK 251

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
             HY CM+++L R GL+ EA   ++  P      +W  L+ ACR +G L+LG+    +L 
Sbjct: 252 IEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLI 311

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
             EP   SNYV+L NIY      ++   +   +  KG++ +P  + IE+  + + F++GD
Sbjct: 312 RNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIYEFVAGD 371

Query: 589 QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLIN 647
           +SH Q+KEIY  VD M  E+ + GY+P    +L D+D++++   L+ HSEKLA+AF L+N
Sbjct: 372 KSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNRHSEKLAIAFALLN 431

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T   T ++IV++ R+C DCH+A K I+ +  REIVVRD +RFHHFK+G+CSC D+W
Sbjct: 432 TPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLCSCRDFW 487



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 156/317 (49%), Gaps = 10/317 (3%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC----GMMIDARRL 187
           TY  ++ AC G+ ++   K V   ++  GF  ++ ++N ++ M+  C    G +  AR++
Sbjct: 12  TYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARKV 71

Query: 188 FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI 247
           FDEM + + VS + +I G +  G   +A  LF ++  +       T  +++ A  GL  +
Sbjct: 72  FDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGLGAL 131

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
            +GK + S   K     NV +S ALIDM++KCG ++ A  +F  M E+  V W ++I G 
Sbjct: 132 ELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGL 191

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL-- 365
           A+HG   EA+ ++ EM  SGV  D   F  ++  C+    ++  K+    + R  F +  
Sbjct: 192 AMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSM-RKDFSIVP 250

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            I     +VD   + G +++A     +M +  N + W  LI     HG  +   ++  Q+
Sbjct: 251 KIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQL 310

Query: 425 LLNGMRPNHVTFLAVLS 441
           + N   P H +   +LS
Sbjct: 311 IRN--EPMHESNYVLLS 325



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 121/240 (50%), Gaps = 11/240 (4%)

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY----SKWGRIEDA 386
           + FT+  +++ C  + +L   K  H  +++ GFG ++   + LV  Y       G IE A
Sbjct: 9   NKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFA 68

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           R VFD+M   + +SW+A+I GY   GR  +A+ LF +M + G+ P+ +T ++VLSAC+  
Sbjct: 69  RKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVSVLSACTGL 128

Query: 447 GLSERG-WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
           G  E G W   +S     +++        +I++  + G +D+A  L R    +   + W 
Sbjct: 129 GALELGKW--VESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVS-WT 185

Query: 506 ALLTACRVNGNLELGKFAAEKLY--GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           +++    ++G         E++   G+ P+ +  ++ LL+  + SG + +      ++R+
Sbjct: 186 SVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVV-FIGLLSACSHSGLVDKGKRYFDSMRK 244



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 98/227 (43%), Gaps = 3/227 (1%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   K  S    + I   V   R  +A+ LF  ++ +G       T  +++SAC GL ++
Sbjct: 73  DEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKG-VCPDEITMVSVLSACTGLGAL 131

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
              K V SY+     + ++ + N ++ M  +CG +  A  LF  M ERN+VS   +I G+
Sbjct: 132 ELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGL 191

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK-MGFGDN 265
              G  +EA  +F ++           F  ++ A +   L+  GK+      K       
Sbjct: 192 AMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPK 251

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHG 311
           +     ++DM  + G +++A     EM  +   V W T+I     HG
Sbjct: 252 IEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHG 298


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/617 (35%), Positives = 360/617 (58%), Gaps = 15/617 (2%)

Query: 99  SQIEKLVLNKRYREALE-LFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           + +  LV +  + EA++ L++++    G      T+ + + AC  L  +   + + +Y++
Sbjct: 243 TMVSVLVQSGMFDEAVQTLYDMVAL--GVRPDGVTFASALPACSRLELLDVGREMHAYVI 300

Query: 158 STG-FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE--RNLVSCNMIIAGMIDSGDYLE 214
                  + ++ + ++ M+     +  AR++FD +P+  + L   N +I G   +G   E
Sbjct: 301 KDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEE 360

Query: 215 AFLLFLDLWEE--FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCAL 272
           A  LF  +  E  F  C + T A+++ A A  E  +  + +H   +K G   N FV  AL
Sbjct: 361 ALRLFARMEAEAGFVPCET-TMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNAL 419

Query: 273 IDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR---DSGVK 329
           +DMY++ G  + A+ +F  +     V WNT+I G  + G+  +A  L  EM+   + GV 
Sbjct: 420 MDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVV 479

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            +  T   ++  C  LA+    K+ H   VRH    D+   SALVD Y+K G +  +R V
Sbjct: 480 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAV 539

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGL 448
           FD++  +N I+WN LI  YG HG G EA  LF++M  +G  RPN VTF+A L+ACS SG+
Sbjct: 540 FDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGM 599

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK-NMWAAL 507
            +RG ++F +M RDH ++P     AC++++LGR G LDEA+A++        + + W+ +
Sbjct: 600 VDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTM 659

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           L ACR++ N+ LG+ A E+L  +EPE+ S+YV+L NIY+++G+   AAEV   +RR+G+ 
Sbjct: 660 LGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVA 719

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ 627
             P CSWIEV    H F++G+ +H  ++E++  ++ +  E+   GY P+   +L D+D+ 
Sbjct: 720 KEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDG 779

Query: 628 EQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
           ++  VL  HSEKLA+AFGL+  +    +++ ++ R+C DCH A K ++ + GREIV+RD 
Sbjct: 780 DKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDV 839

Query: 687 SRFHHFKDGMCSCGDYW 703
            RFHHF++G CSCGDYW
Sbjct: 840 RRFHHFRNGQCSCGDYW 856



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 128/490 (26%), Positives = 223/490 (45%), Gaps = 29/490 (5%)

Query: 52  RSFQRVECCLMEQGLKPRPKP---NKIYTEELKESSLPD--------TQMKKPSAGICSQ 100
           RS + +    + +GL  RP P   N + T   +   L          +     +    S 
Sbjct: 76  RSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSL 135

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGL----RSIREVKRVFSYM 156
           I  L L +R+ +           GG  + S T  +++ A   L     ++R  +   ++ 
Sbjct: 136 ISALCLFRRW-DHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFA 194

Query: 157 LSTGF--EPDLYMRNRVLLMHVRCGMMIDARRLF-DEMPER-NLVSCNMIIAGMIDSGDY 212
           L  G       +  N +L M+ R G++ DA+RLF    P R ++V+ N +++ ++ SG +
Sbjct: 195 LKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMF 254

Query: 213 LEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG-FGDNVFVSCA 271
            EA     D+          TFA+ + A + LEL+ VG+++H+  +K      N FV+ A
Sbjct: 255 DEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASA 314

Query: 272 LIDMYSKCGSIEDAQGVFDEM--SEKTTVGWNTIIAGYALHGYSEEALDLYYEMR-DSGV 328
           L+DMY+    +  A+ VFD +  S K    WN +I GYA  G  EEAL L+  M  ++G 
Sbjct: 315 LVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGF 374

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
                T + ++  C R  +    +  H  +V+ G   +    +AL+D Y++ G+ + AR 
Sbjct: 375 VPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARR 434

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVEL---FEQMLLNGMRPNHVTFLAVLSACSR 445
           +F  +   +V+SWN LI G    G   +A +L    +Q+   G+ PN +T + +L  C+ 
Sbjct: 435 IFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAI 494

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
                RG EI     R H +       + ++++  + G L  + A+    P + T   W 
Sbjct: 495 LAAPARGKEIHGYAVR-HALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTIT-WN 552

Query: 506 ALLTACRVNG 515
            L+ A  ++G
Sbjct: 553 VLIMAYGMHG 562



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 139/284 (48%), Gaps = 13/284 (4%)

Query: 238 IRASAGLELISVGKQLHSCALKMGF--GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
           I+++A L      + +H+ AL+ G     +  V+ AL+  Y++CG +  A  VF  +S+ 
Sbjct: 66  IKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDS 125

Query: 296 T--TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL----ASLE 349
               V +N++I+   L    + AL     M   G  +  FT   ++R  + L    A++ 
Sbjct: 126 AHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVR 185

Query: 350 HAKQAHAGLVRHGF--GLDIVANSALVDFYSKWGRIEDARHVFDKMLCK--NVISWNALI 405
             ++AHA  +++G   G    A +AL+  Y++ G + DA+ +F        +V++WN ++
Sbjct: 186 LGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMV 245

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
           +     G  +EAV+    M+  G+RP+ VTF + L ACSR  L + G E+   + +D ++
Sbjct: 246 SVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDEL 305

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK-NMWAALL 508
              +   + ++++      + +A  +    P    +  MW A++
Sbjct: 306 AANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMI 349



 Score = 39.3 bits (90), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 119/317 (37%), Gaps = 49/317 (15%)

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF---GLDIVANSALVDFYSKWGRIED 385
           ++DH      I+    L     A+  HA  +R G        VAN AL+  Y++ GR+  
Sbjct: 56  QLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVAN-ALLTAYARCGRLAA 114

Query: 386 ARHVFDKM--LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           A  VF  +     + +S+N+LI+      R + A+     ML  G      T ++VL A 
Sbjct: 115 ALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAV 174

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S                         +  A     LGRE     AFAL  G      +  
Sbjct: 175 SH------------------------LPAAAAAVRLGREA---HAFALKNGLLHGHQRFA 207

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEK--LSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           + ALL+   +   L L   A     G  P +  +  +  ++++   SG   EA + +  +
Sbjct: 208 FNALLS---MYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDM 264

Query: 562 RRKGLR--------MLPACSWIE---VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
              G+R         LPACS +E   V ++ H ++  D        +   +  M     +
Sbjct: 265 VALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQ 324

Query: 611 HGYVPEEKTLLPDVDEQ 627
            G   +   ++PD  +Q
Sbjct: 325 VGKARQVFDMVPDSGKQ 341


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 226/677 (33%), Positives = 373/677 (55%), Gaps = 70/677 (10%)

Query: 83  SSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIG 142
           + LP   +   +A + +  E    + + R+AL LF+ +         + +++ +IS  + 
Sbjct: 45  TPLPQRTIASWNAMVSAYFE----SHKPRDALLLFDQMP-----QRNTVSFNGMISGYVK 95

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
              + + ++VF  M     E ++     ++  +V+ GM+ +A +LF EMP RN+VS  ++
Sbjct: 96  NGMVADARKVFDVMP----ERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVM 151

Query: 203 IAGMIDSGDYLEAFLLF-----------------------LD----LWEEFSDCGSRTFA 235
           I G++      +A  LF                       LD    L++E       T+ 
Sbjct: 152 IGGLLKESRIDDAKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWT 211

Query: 236 TMIRASAGLELISVGKQLHSC----------ALKMGFGDN----------------VFVS 269
           TM+   A    + V ++L             A+ MG+  +                  V+
Sbjct: 212 TMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVA 271

Query: 270 C-ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
           C  +I  +   G +  A+ +F+ M E+    WN +I  +   G   EAL L+  M+  GV
Sbjct: 272 CNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGV 331

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
            ++  +   ++ +C  LASL+H +Q HA LVR  F  D+   S L+  Y K G +  A+ 
Sbjct: 332 ALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKG 391

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           +F++ L K+V+ WN++I GY  HG GEEA+ +F  M  +G++P+ VTF+ VLSACS SG 
Sbjct: 392 IFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGK 451

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
            + G+EIF++M   ++++P   HYACM++LLGR G +DEA  L+   P +    +W ALL
Sbjct: 452 VKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALL 511

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
            ACR +  L+L + A EKL  +EP+    YV+L ++Y + G+ ++   + + + R+ ++ 
Sbjct: 512 GACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRDVEVLRKKINRRVIK- 570

Query: 569 LPACSWIEVKKQPHVFLSGD-QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ 627
            P CSWIEV+K+ H+F  GD +SH +   I + ++++   + + GY P+   +L DVDE+
Sbjct: 571 FPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAGYCPDGSFVLHDVDEE 630

Query: 628 EQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
           E+   L YHSE+LAVA+GL+   +  P++++++ R+C DCH+AIKLIA VTGREI++RDA
Sbjct: 631 EKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTGREIILRDA 690

Query: 687 SRFHHFKDGMCSCGDYW 703
           +RFHHFKDG CSC D+W
Sbjct: 691 NRFHHFKDGSCSCKDFW 707



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 162/353 (45%), Gaps = 65/353 (18%)

Query: 177 RCGMMIDARRLFDE--MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF 234
           R G + +AR++FD   +P+R + S N +++   +S    +A LLF    ++     + +F
Sbjct: 31  RIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLF----DQMPQRNTVSF 86

Query: 235 ATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE 294
             MI                                     Y K G + DA+ VFD M E
Sbjct: 87  NGMISG-----------------------------------YVKNGMVADARKVFDVMPE 111

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
           +  V W +++ GY   G  EEA  L++EM    V     +++++I    + + ++ AK+ 
Sbjct: 112 RNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNV----VSWTVMIGGLLKESRIDDAKKL 167

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414
              +       D+V  + ++  Y + GR+++AR +FD+M  +NV +W  +++GY  +GR 
Sbjct: 168 FDMIPEK----DVVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRV 223

Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474
           + A +LFE M       N V++ A+L   ++SG  +  +E+F++M       P     AC
Sbjct: 224 DVARKLFEVMP----ERNEVSWTAMLMGYTQSGRMKEAFELFEAM-------PVKWIVAC 272

Query: 475 --MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG-NLE-LGKFA 523
             MI   G  G +  A  +  G   +  +  W A++      G +LE LG FA
Sbjct: 273 NEMILQFGLAGEMHRARMMFEGMK-ERDEGTWNAMIKVFERKGLDLEALGLFA 324



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 102/208 (49%), Gaps = 27/208 (12%)

Query: 367 IVANSALVDFYSKWGRIEDARHVFDK--MLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
           + +N++ +  Y + G I +AR VFD   +  + + SWNA+++ Y    +  +A+ LF+QM
Sbjct: 19  LCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQM 78

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
                + N V+F  ++S   ++G+     ++F  M   + +      +  M+    +EG+
Sbjct: 79  P----QRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVS-----WTSMVRGYVQEGM 129

Query: 485 LDEAFALIRGAPFKTTKN---MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
           ++EA  L    P +   +   M   LL   R++         A+KL+ M PEK  + VV+
Sbjct: 130 VEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDD--------AKKLFDMIPEK--DVVVV 179

Query: 542 LNI---YNSSGKLKEAAEVIRTLRRKGL 566
            N+   Y   G+L EA E+   ++ + +
Sbjct: 180 TNMIGGYCQVGRLDEARELFDEMKVRNV 207


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/617 (35%), Positives = 360/617 (58%), Gaps = 15/617 (2%)

Query: 99  SQIEKLVLNKRYREALE-LFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           + +  LV +  + EA++ L++++    G      T+ + + AC  L  +   + + +Y++
Sbjct: 241 TMVSVLVQSGMFDEAVQTLYDMVAL--GVRPDGVTFASALPACSRLELLDVGREMHAYVI 298

Query: 158 STG-FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE--RNLVSCNMIIAGMIDSGDYLE 214
                  + ++ + ++ M+     +  AR++FD +P+  + L   N +I G   +G   E
Sbjct: 299 KDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEE 358

Query: 215 AFLLFLDLWEE--FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCAL 272
           A  LF  +  E  F  C + T A+++ A A  E  +  + +H   +K G   N FV  AL
Sbjct: 359 ALRLFARMEAEAGFVPCET-TMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNAL 417

Query: 273 IDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR---DSGVK 329
           +DMY++ G  + A+ +F  +     V WNT+I G  + G+  +A  L  EM+   + GV 
Sbjct: 418 MDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVV 477

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            +  T   ++  C  LA+    K+ H   VRH    D+   SALVD Y+K G +  +R V
Sbjct: 478 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAV 537

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGL 448
           FD++  +N I+WN LI  YG HG G EA  LF++M  +G  RPN VTF+A L+ACS SG+
Sbjct: 538 FDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGM 597

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK-NMWAAL 507
            +RG ++F +M RDH ++P     AC++++LGR G LDEA+A++        + + W+ +
Sbjct: 598 VDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTM 657

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           L ACR++ N+ LG+ A E+L  +EPE+ S+YV+L NIY+++G+   AAEV   +RR+G+ 
Sbjct: 658 LGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVA 717

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ 627
             P CSWIEV    H F++G+ +H  ++E++  ++ +  E+   GY P+   +L D+D+ 
Sbjct: 718 KEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDG 777

Query: 628 EQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
           ++  VL  HSEKLA+AFGL+  +    +++ ++ R+C DCH A K ++ + GREIV+RD 
Sbjct: 778 DKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDV 837

Query: 687 SRFHHFKDGMCSCGDYW 703
            RFHHF++G CSCGDYW
Sbjct: 838 RRFHHFRNGQCSCGDYW 854



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 128/490 (26%), Positives = 223/490 (45%), Gaps = 29/490 (5%)

Query: 52  RSFQRVECCLMEQGLKPRPKP---NKIYTEELKESSLPD--------TQMKKPSAGICSQ 100
           RS + +    + +GL  RP P   N + T   +   L          +     +    S 
Sbjct: 74  RSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSL 133

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGL----RSIREVKRVFSYM 156
           I  L L +R+ +           GG  + S T  +++ A   L     ++R  +   ++ 
Sbjct: 134 ISALCLFRRW-DHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFA 192

Query: 157 LSTGF--EPDLYMRNRVLLMHVRCGMMIDARRLF-DEMPER-NLVSCNMIIAGMIDSGDY 212
           L  G       +  N +L M+ R G++ DA+RLF    P R ++V+ N +++ ++ SG +
Sbjct: 193 LKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMF 252

Query: 213 LEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG-FGDNVFVSCA 271
            EA     D+          TFA+ + A + LEL+ VG+++H+  +K      N FV+ A
Sbjct: 253 DEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASA 312

Query: 272 LIDMYSKCGSIEDAQGVFDEM--SEKTTVGWNTIIAGYALHGYSEEALDLYYEMR-DSGV 328
           L+DMY+    +  A+ VFD +  S K    WN +I GYA  G  EEAL L+  M  ++G 
Sbjct: 313 LVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGF 372

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
                T + ++  C R  +    +  H  +V+ G   +    +AL+D Y++ G+ + AR 
Sbjct: 373 VPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARR 432

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVEL---FEQMLLNGMRPNHVTFLAVLSACSR 445
           +F  +   +V+SWN LI G    G   +A +L    +Q+   G+ PN +T + +L  C+ 
Sbjct: 433 IFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAI 492

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
                RG EI     R H +       + ++++  + G L  + A+    P + T   W 
Sbjct: 493 LAAPARGKEIHGYAVR-HALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTIT-WN 550

Query: 506 ALLTACRVNG 515
            L+ A  ++G
Sbjct: 551 VLIMAYGMHG 560



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 139/284 (48%), Gaps = 13/284 (4%)

Query: 238 IRASAGLELISVGKQLHSCALKMGF--GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
           I+++A L      + +H+ AL+ G     +  V+ AL+  Y++CG +  A  VF  +S+ 
Sbjct: 64  IKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDS 123

Query: 296 T--TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL----ASLE 349
               V +N++I+   L    + AL     M   G  +  FT   ++R  + L    A++ 
Sbjct: 124 AHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVR 183

Query: 350 HAKQAHAGLVRHGF--GLDIVANSALVDFYSKWGRIEDARHVFDKMLCK--NVISWNALI 405
             ++AHA  +++G   G    A +AL+  Y++ G + DA+ +F        +V++WN ++
Sbjct: 184 LGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMV 243

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
           +     G  +EAV+    M+  G+RP+ VTF + L ACSR  L + G E+   + +D ++
Sbjct: 244 SVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDEL 303

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK-NMWAALL 508
              +   + ++++      + +A  +    P    +  MW A++
Sbjct: 304 AANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMI 347



 Score = 39.3 bits (90), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 119/317 (37%), Gaps = 49/317 (15%)

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF---GLDIVANSALVDFYSKWGRIED 385
           ++DH      I+    L     A+  HA  +R G        VAN AL+  Y++ GR+  
Sbjct: 54  QLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVAN-ALLTAYARCGRLAA 112

Query: 386 ARHVFDKM--LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           A  VF  +     + +S+N+LI+      R + A+     ML  G      T ++VL A 
Sbjct: 113 ALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAV 172

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S                         +  A     LGRE     AFAL  G      +  
Sbjct: 173 SH------------------------LPAAAAAVRLGREA---HAFALKNGLLHGHQRFA 205

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEK--LSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           + ALL+   +   L L   A     G  P +  +  +  ++++   SG   EA + +  +
Sbjct: 206 FNALLS---MYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDM 262

Query: 562 RRKGLR--------MLPACSWIE---VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
              G+R         LPACS +E   V ++ H ++  D        +   +  M     +
Sbjct: 263 VALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQ 322

Query: 611 HGYVPEEKTLLPDVDEQ 627
            G   +   ++PD  +Q
Sbjct: 323 VGKARQVFDMVPDSGKQ 339


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/581 (36%), Positives = 320/581 (55%), Gaps = 23/581 (3%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G DV  +T  +++  C    ++   K V S  + + FE  +   N +L M+ +CG +  A
Sbjct: 246 GIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGA 305

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
            R+F++M ERN+VS   +IAG    G    A  L   + +E          +++ A A  
Sbjct: 306 LRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARS 365

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             +  GK +H          N+FV  AL+DMY+KCGS+E A  VF  M  K  + WNT+I
Sbjct: 366 GSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI 425

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
                                  +K D  T + ++  C  L++LE  K+ H  ++R+G+ 
Sbjct: 426 GE---------------------LKPDSRTMACVLPACASLSALERGKEIHGYILRNGYS 464

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D    +ALVD Y K G +  AR +FD +  K+++SW  +IAGYG HG G EA+  F +M
Sbjct: 465 SDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEM 524

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
              G+ P+ V+F+++L ACS SGL E+GW  F  M  D  I+P+  HYACM++LL R G 
Sbjct: 525 RDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGN 584

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L +A+  I   P      +W ALL  CR   ++EL +  AE+++ +EPE    YV+L NI
Sbjct: 585 LSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENSGYYVLLANI 644

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ-SHVQTKEIYRKVDR 603
           Y  + K +E   +   + ++GLR  P CSWIE+K + ++F+SG+  SH  +K I   + +
Sbjct: 645 YAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKK 704

Query: 604 MMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           M  ++ + G+ P+ K  L + DE Q++  L  HSEKLA+AFGL+       +++ ++ R+
Sbjct: 705 MRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRV 764

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH   K ++  T REIV+RD +RFHHFKDG CSC  +W
Sbjct: 765 CGDCHEMAKFMSKETRREIVLRDPNRFHHFKDGYCSCRGFW 805



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 136/519 (26%), Positives = 228/519 (43%), Gaps = 109/519 (21%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           + TY +++  C GL+S  + K+V S + S     D  +  +++  +  CG + + RR+FD
Sbjct: 99  TKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFD 158

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLF----------------LDLWEEFSDCGSRT 233
            M ++N+   N +++     GD+ E+  LF                 +L+++  D    +
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVIS 218

Query: 234 FATMIRA--SAGLE---------------------------------LISVGKQLHSCAL 258
           + +MI    S GL                                   +S+GK +HS A+
Sbjct: 219 WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAI 278

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
           K  F   +  S  L+DMYSKCG ++ A  VF++M E+  V W ++IAGY   G S+ A+ 
Sbjct: 279 KSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIK 338

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378
           L  +M   GVK+D    + I+  C R  SL++ K  H  +  +    ++   +AL+D Y+
Sbjct: 339 LLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYA 398

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
           K G +E A  VF  M+ K++ISWN +I        GE             ++P+  T   
Sbjct: 399 KCGSMEAANSVFSTMVVKDIISWNTMI--------GE-------------LKPDSRTMAC 437

Query: 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPR------------------------------ 468
           VL AC+     ERG EI   + R+     R                              
Sbjct: 438 VLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD 497

Query: 469 AMHYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWAALLTACRVNGNLELG---KF 522
            + +  MI   G  G  +EA A    +R A  +  +  + ++L AC  +G LE G    +
Sbjct: 498 LVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFY 557

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
             +  + +EP KL +Y  ++++ + +G L +A E I TL
Sbjct: 558 IMKNDFNIEP-KLEHYACMVDLLSRTGNLSKAYEFIETL 595



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 133/280 (47%), Gaps = 51/280 (18%)

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
           S+  ++T++++++  AGL+  + GK++HS       G +  +   L+  Y+ CG +++ +
Sbjct: 95  SELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGR 154

Query: 287 GVFDEMSEKTT------------------------------------------------- 297
            VFD M +K                                                   
Sbjct: 155 RVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDR 214

Query: 298 --VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             + WN++I+GY  +G +E  L +Y +M   G+ +D  T   ++  C    +L   K  H
Sbjct: 215 DVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVH 274

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
           +  ++  F   I  ++ L+D YSK G ++ A  VF+KM  +NV+SW ++IAGY   GR +
Sbjct: 275 SLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSD 334

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
            A++L +QM   G++ + V   ++L AC+RSG  + G ++
Sbjct: 335 GAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 103/223 (46%), Gaps = 28/223 (12%)

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H  +LK      +F SC  I + +      D Q             +N  I  +   G 
Sbjct: 32  IHKPSLKTKIFSPIFSSCIPIRISATPTRTIDHQ----------VTDYNAKILHFCQLGD 81

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            E A++L    + S  +++  T+S ++++C  L S    K+ H+ +  +  G+D      
Sbjct: 82  LENAMELICMCKKS--ELETKTYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLK 139

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML---LNGM 429
           LV FY+  G +++ R VFD M  KNV  WN +++ Y   G  +E++ LF+ M+   + G 
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 430 RPNH-------------VTFLAVLSACSRSGLSERGWEIFQSM 459
           RP               +++ +++S    +GL+ERG  I++ M
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQM 242


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/617 (35%), Positives = 360/617 (58%), Gaps = 15/617 (2%)

Query: 99  SQIEKLVLNKRYREALE-LFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           + +  LV +  + EA++ L++++    G      T+ + + AC  L  +   + + +Y++
Sbjct: 241 TMVSVLVQSGMFDEAVQTLYDMVAL--GVRPDGVTFASALPACSRLELLDVGREMHAYVI 298

Query: 158 STG-FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE--RNLVSCNMIIAGMIDSGDYLE 214
                  + ++ + ++ M+     +  AR++FD +P+  + L   N +I G   +G   E
Sbjct: 299 KDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEE 358

Query: 215 AFLLFLDLWEE--FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCAL 272
           A  LF  +  E  F  C + T A+++ A A  E  +  + +H   +K G   N FV  AL
Sbjct: 359 ALRLFARMEAEAGFVPCET-TMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNAL 417

Query: 273 IDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR---DSGVK 329
           +DMY++ G  + A+ +F  +     V WNT+I G  + G+  +A  L  EM+   + GV 
Sbjct: 418 MDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVV 477

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            +  T   ++  C  LA+    K+ H   VRH    D+   SALVD Y+K G +  +R V
Sbjct: 478 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAV 537

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGL 448
           FD++  +N I+WN LI  YG HG G EA  LF++M  +G  RPN VTF+A L+ACS SG+
Sbjct: 538 FDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGM 597

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK-NMWAAL 507
            +RG ++F +M RDH ++P     AC++++LGR G LDEA+A++        + + W+ +
Sbjct: 598 VDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTM 657

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           L ACR++ N+ LG+ A E+L  +EPE+ S+YV+L NIY+++G+   AAEV   +RR+G+ 
Sbjct: 658 LGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVA 717

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ 627
             P CSWIEV    H F++G+ +H  ++E++  ++ +  E+   GY P+   +L D+D+ 
Sbjct: 718 KEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDG 777

Query: 628 EQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
           ++  VL  HSEKLA+AFGL+  +    +++ ++ R+C DCH A K ++ + GREIV+RD 
Sbjct: 778 DKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDV 837

Query: 687 SRFHHFKDGMCSCGDYW 703
            RFHHF++G CSCGDYW
Sbjct: 838 RRFHHFRNGQCSCGDYW 854



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 128/490 (26%), Positives = 223/490 (45%), Gaps = 29/490 (5%)

Query: 52  RSFQRVECCLMEQGLKPRPKP---NKIYTEELKESSLPD--------TQMKKPSAGICSQ 100
           RS + +    + +GL  RP P   N + T   +   L          +     +    S 
Sbjct: 74  RSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSL 133

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGL----RSIREVKRVFSYM 156
           I  L L +R+ +           GG  + S T  +++ A   L     ++R  +   ++ 
Sbjct: 134 ISALCLFRRW-DHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFA 192

Query: 157 LSTGF--EPDLYMRNRVLLMHVRCGMMIDARRLF-DEMPER-NLVSCNMIIAGMIDSGDY 212
           L  G       +  N +L M+ R G++ DA+RLF    P R ++V+ N +++ ++ SG +
Sbjct: 193 LKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMF 252

Query: 213 LEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG-FGDNVFVSCA 271
            EA     D+          TFA+ + A + LEL+ VG+++H+  +K      N FV+ A
Sbjct: 253 DEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASA 312

Query: 272 LIDMYSKCGSIEDAQGVFDEM--SEKTTVGWNTIIAGYALHGYSEEALDLYYEMR-DSGV 328
           L+DMY+    +  A+ VFD +  S K    WN +I GYA  G  EEAL L+  M  ++G 
Sbjct: 313 LVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGF 372

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
                T + ++  C R  +    +  H  +V+ G   +    +AL+D Y++ G+ + AR 
Sbjct: 373 VPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARR 432

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVEL---FEQMLLNGMRPNHVTFLAVLSACSR 445
           +F  +   +V+SWN LI G    G   +A +L    +Q+   G+ PN +T + +L  C+ 
Sbjct: 433 IFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAI 492

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
                RG EI     R H +       + ++++  + G L  + A+    P + T   W 
Sbjct: 493 LAAPARGKEIHGYAVR-HALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTIT-WN 550

Query: 506 ALLTACRVNG 515
            L+ A  ++G
Sbjct: 551 VLIMAYGMHG 560



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 139/284 (48%), Gaps = 13/284 (4%)

Query: 238 IRASAGLELISVGKQLHSCALKMGF--GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
           I+++A L      + +H+ AL+ G     +  V+ AL+  Y++CG +  A  VF  +S+ 
Sbjct: 64  IKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDS 123

Query: 296 T--TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL----ASLE 349
               V +N++I+   L    + AL     M   G  +  FT   ++R  + L    A++ 
Sbjct: 124 AHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVR 183

Query: 350 HAKQAHAGLVRHGF--GLDIVANSALVDFYSKWGRIEDARHVFDKMLCK--NVISWNALI 405
             ++AHA  +++G   G    A +AL+  Y++ G + DA+ +F        +V++WN ++
Sbjct: 184 LGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMV 243

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
           +     G  +EAV+    M+  G+RP+ VTF + L ACSR  L + G E+   + +D ++
Sbjct: 244 SVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDEL 303

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK-NMWAALL 508
              +   + ++++      + +A  +    P    +  MW A++
Sbjct: 304 AANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMI 347



 Score = 39.3 bits (90), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 72/317 (22%), Positives = 119/317 (37%), Gaps = 49/317 (15%)

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF---GLDIVANSALVDFYSKWGRIED 385
           ++DH      I+    L     A+  HA  +R G        VAN AL+  Y++ GR+  
Sbjct: 54  QLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVAN-ALLTAYARCGRLAA 112

Query: 386 ARHVFDKM--LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           A  VF  +     + +S+N+LI+      R + A+     ML  G      T ++VL A 
Sbjct: 113 ALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAV 172

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S                         +  A     LGRE     AFAL  G      +  
Sbjct: 173 SH------------------------LPAAAAAVRLGREA---HAFALKNGLLHGHQRFA 205

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEK--LSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           + ALL+   +   L L   A     G  P +  +  +  ++++   SG   EA + +  +
Sbjct: 206 FNALLS---MYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDM 262

Query: 562 RRKGLR--------MLPACSWIE---VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
              G+R         LPACS +E   V ++ H ++  D        +   +  M     +
Sbjct: 263 VALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQ 322

Query: 611 HGYVPEEKTLLPDVDEQ 627
            G   +   ++PD  +Q
Sbjct: 323 VGKARQVFDMVPDSGKQ 339


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/609 (34%), Positives = 348/609 (57%), Gaps = 23/609 (3%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +    L+  + EA  LF+ ++     +     +  +++      +I + K  F  M    
Sbjct: 61  LSAFALSGHHEEAKTLFDTMQ-----ERDLIAWTIMLTVLATFSNIEDAKYHFDQMP--- 112

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            E DL     +L  +   G M +AR  FD+MPERNL S   +++    SGD   A  +F 
Sbjct: 113 -ERDLVAWTAMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVF- 170

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           D   E++        T    S   +++   +   S   +     ++    A++  Y+  G
Sbjct: 171 DSMPEWNLVAWTAMLTGYSLSG--DVVRAKRAFDSMPER-----DLIAWTAMLSAYAFNG 223

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR-----DSGVKMDHFTF 335
            +   + +F  M E+  + W T++A    +   EE+ +L+  M        G+  +  TF
Sbjct: 224 HLRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTF 283

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
             ++  C+ L +L   ++ HA +   GF  D+V ++ALV+FY + G + DA+ VFD M  
Sbjct: 284 ITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRR 343

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           ++VISW+++I+ +   GR +EA+EL+ +ML  G  P+ + F++VL ACS SG+ E   + 
Sbjct: 344 RDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDF 403

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F+S+  D +++P   HYACM+++LGR G L +A  L+R  PF     ++  +L+AC++  
Sbjct: 404 FRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYT 463

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575
           ++E G+ AAE ++ ++PE  S Y+ L NIY+++ + K+AA + + +  +G++  P CSWI
Sbjct: 464 DVERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWI 523

Query: 576 EVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSY 634
           EV  + H F++GD+ H Q  EIY ++ R+  ++ + GY  + K +L DV+E E + +L Y
Sbjct: 524 EVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWY 583

Query: 635 HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKD 694
           HSEKLA+AFGLI+T    PL+IV++ R+C DCH A K+I+ VTGREI+VRD +RFHHF++
Sbjct: 584 HSEKLAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFQN 643

Query: 695 GMCSCGDYW 703
           GMCSC DYW
Sbjct: 644 GMCSCNDYW 652



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 148/332 (44%), Gaps = 51/332 (15%)

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
           ++ +Y++ G + +A+GVFD M   +   W  +++ +AL G+ EEA  L+  M++     D
Sbjct: 29  MLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSAFALSGHHEEAKTLFDTMQER----D 84

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
              +++++ +    +++E AK     +       D+VA +A++   ++ G++E+AR  FD
Sbjct: 85  LIAWTIMLTVLATFSNIEDAKYHFDQMPER----DLVAWTAMLAANAERGQMENARETFD 140

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
           +M  +N+ SW +L++ YG  G  + A  +F+ M       N V + A+L+  S SG   R
Sbjct: 141 QMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSM----PEWNLVAWTAMLTGYSLSGDVVR 196

Query: 452 GWEIFQSMSRDHKIKPRAM--------------------------HYACMIELLGREGLL 485
               F SM     I   AM                           +A M+  L    LL
Sbjct: 197 AKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVENDLL 256

Query: 486 DEAFALIRGAP--------FKTTKNMWAALLTACRVNGNLELGK--FAAEKLYGMEPE-K 534
           +E+  L    P            +  +  LL AC   G L  G+   AA    G + +  
Sbjct: 257 EESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLV 316

Query: 535 LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           +SN   L+N Y   G L +A  V   +RR+ +
Sbjct: 317 VSN--ALVNFYGRCGALGDAKIVFDGMRRRDV 346



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 15/186 (8%)

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           + + G +E AR +FD +  ++  SW  +++ Y   G    A  +F++M     R +  ++
Sbjct: 2   FGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRM----PRWSLGSW 57

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
            A+LSA + SG  E    +F +M     I      +  M+ +L     +++A       P
Sbjct: 58  TALLSAFALSGHHEEAKTLFDTMQERDLIA-----WTIMLTVLATFSNIEDAKYHFDQMP 112

Query: 497 FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEAA 555
            +     W A+L A    G +E     A + +   PE+ L ++  LL+ Y  SG +K A 
Sbjct: 113 ERDLV-AWTAMLAANAERGQME----NARETFDQMPERNLFSWTSLLSAYGRSGDVKAAG 167

Query: 556 EVIRTL 561
            V  ++
Sbjct: 168 RVFDSM 173


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/629 (34%), Positives = 352/629 (55%), Gaps = 18/629 (2%)

Query: 80  LKESSLPDTQMKKPSAGICSQIEKL--VLNKRYREALELFEILEFEGGFDVGSSTYDALI 137
           L+  +LPD      S  +   +     +L    R  L    I  F    +    TY  L+
Sbjct: 91  LRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLL 150

Query: 138 SACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLV 197
              +    + E +++F  M     + D+  R  +L  + + G + +AR LFDEMP+RN+V
Sbjct: 151 GGFLDAGRVNEARKLFDEMP----DKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVV 206

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257
           S   +I+G   +G  + A  LF    E   D    ++  M+     +  I  G    +  
Sbjct: 207 SWTAMISGYAQNGKVILARKLF----EVMPDRNEVSWTAML-----VGYIQAGHVEDAED 257

Query: 258 LKMGFGDNVFVSC-ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
           L     D+   +C A++  + + G ++ A+ +F+ M  +    W+ +I  Y  + +  EA
Sbjct: 258 LFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEA 317

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
           L  + EM   G++ ++ +F  I+ +C  LA+ ++ ++ HA ++R  F  D+ A SAL+  
Sbjct: 318 LSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITM 377

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           Y K G ++ A+ VF+    K+V+ WN++I GY  HG GEEA+ +F+ + L  M P+ +T+
Sbjct: 378 YIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITY 437

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
           + VL+ACS +G  + G EIF SM  +  I+  A HY+CM++LLGR GL+DEA  LI   P
Sbjct: 438 IGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMP 497

Query: 497 FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
            +    +W AL+ ACR++ N E+ + AA+KL  +EP     YV+L +IY S+G+ ++A++
Sbjct: 498 VEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASD 557

Query: 557 VIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ-SHVQTKEIYRKVDRMMLEISKHGYVP 615
           + + +  + L   P CSWIE  K  H+F SGD  SH +   I   ++ +   + + GY  
Sbjct: 558 MRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLSHPEHAIILNMLEELDGLLMESGYSA 617

Query: 616 EEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
           +   +L DVD EQ+ + L YHSE+ AVA+GL+      P++++++ R+C DCH+AIKLI 
Sbjct: 618 DGSFVLHDVDEEQKAQSLRYHSERQAVAYGLLKVPAGMPIRVMKNLRVCGDCHSAIKLIT 677

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            +T REI++RDA+RFHHFKDG+CSC DYW
Sbjct: 678 KITSREIILRDANRFHHFKDGLCSCRDYW 706



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 165/403 (40%), Gaps = 67/403 (16%)

Query: 157 LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF 216
           L +   P +   N  +   VR G +  AR  FD MP R   S N +IAG     ++L   
Sbjct: 9   LPSSTAPAVVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFR--NHLPDA 66

Query: 217 LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCAL-KMGFGDNVFVSCALIDM 275
            L L     F    SR   +     AGL L        + AL  +    +V    +L+  
Sbjct: 67  ALGL-----FHRMPSRDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRG 121

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           Y + G + DA  +F +M E+  V +  ++ G+   G   EA  L+ EM D          
Sbjct: 122 YVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDK--------- 172

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
                                         D+VA +A++  Y + GRI +AR +FD+M  
Sbjct: 173 ------------------------------DVVARTAMLSGYCQAGRITEARALFDEMPK 202

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           +NV+SW A+I+GY  +G+   A +LFE M       N V++ A+L    ++G  E   ++
Sbjct: 203 RNVVSWTAMISGYAQNGKVILARKLFEVM----PDRNEVSWTAMLVGYIQAGHVEDAEDL 258

Query: 456 FQSMSRDHKIKPRAMHYAC--MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           F +M  DH +       AC  M+   G+ G++D A A+      +     W+A++     
Sbjct: 259 FNAMP-DHPVA------ACNAMMVGFGQHGMVDAAKAMFERMCAR-DDGTWSAMIKVYEQ 310

Query: 514 NGNL--ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
           N  L   L  F      G+ P    NY   ++I      L  A
Sbjct: 311 NEFLMEALSTFREMLCRGIRP----NYTSFISILTVCAALATA 349



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 23/206 (11%)

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +VA +A + +  + G IE AR  FD M  +   S+NALIAGY  +   + A+ LF +M  
Sbjct: 17  VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPS 76

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI--KPRAMHYACMIELLGREGL 484
             +     ++ A++     +GLS R   +  + +    I   P  + +  ++    R GL
Sbjct: 77  RDLG----SYNALI-----AGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGL 127

Query: 485 LDEAFALIRGAPFK---TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNYVV 540
           L +A  L    P +   T   +    L A RVN         A KL+   P+K +     
Sbjct: 128 LADAIRLFHQMPERNHVTYTVLLGGFLDAGRVN--------EARKLFDEMPDKDVVARTA 179

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGL 566
           +L+ Y  +G++ EA  +   + ++ +
Sbjct: 180 MLSGYCQAGRITEARALFDEMPKRNV 205


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/602 (32%), Positives = 346/602 (57%), Gaps = 8/602 (1%)

Query: 107 NKRYREALELFE--ILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           N  +R AL++++  + +   G    + T+ + + AC  +  I + + + +  +++G+  D
Sbjct: 138 NGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASD 197

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
             ++N ++ M+ +CG +  AR++FD +  R++++ N +I+G    G   +A  LF  +  
Sbjct: 198 SIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGP 257

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS-IE 283
                   TF  ++ A   LE +  G+ +H    + G+  ++ +   L++MY+KC S +E
Sbjct: 258 NDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLE 317

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
           +A+ VF+ M  +  + WN +I  Y  +G +++ALD++ +M+   V  +  T S ++  C 
Sbjct: 318 EARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACA 377

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            L +    K  HA +       D+V  ++L++ Y++ G ++D   VF  +  K+++SW+ 
Sbjct: 378 VLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWST 437

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           LIA Y  HG     +E F ++L  G+  + VT ++ LSACS  G+ + G + F SM  DH
Sbjct: 438 LIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDH 497

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            + P   H+ CM++LL R G L+ A  LI   PF      W +LL+ C+++ + +     
Sbjct: 498 GLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARV 557

Query: 524 AEKLYGMEPEKLSNYVVLL-NIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPH 582
           A+KL+ +E E   + V LL N+Y  +G+     +V +T  R+  R  P CS+IE+    H
Sbjct: 558 ADKLFELESEDEHSTVTLLSNVYAEAGRWD---DVRKTRNRRAARKNPGCSYIEINDTVH 614

Query: 583 VFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAV 641
            F++GD+SH + + I  ++ R+  ++   GYVP+ + +L +V E+E +++L YHSEKLA+
Sbjct: 615 EFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAI 674

Query: 642 AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
           A+GLI+T   TPL IV++ R C DCH A K I+ + GR+IVVRD++RFHHF++G CSC D
Sbjct: 675 AYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKD 734

Query: 702 YW 703
           YW
Sbjct: 735 YW 736



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 147/541 (27%), Positives = 266/541 (49%), Gaps = 58/541 (10%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGF-EPDL 165
           N  YREAL  +  +  EG      + +   I  C   + +++ + + + +L T   E D+
Sbjct: 36  NGHYREALGYYRRMVLEG-LRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDI 94

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            +   ++ M+ RC  +  AR+ FDEM ++ LV+ N +IAG   +GD+  A  ++ D+  +
Sbjct: 95  ILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSK 154

Query: 226 FSDC---GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
             +     + TF++ + A   +  IS G+++ +  +  G+  +  V  ALI+MYSKCGS+
Sbjct: 155 SPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSL 214

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           E A+ VFD +  +  + WNT+I+GYA  G + +AL+L+  M  +  K +  TF  ++  C
Sbjct: 215 ESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTAC 274

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW-GRIEDARHVFDKMLCKNVISW 401
           T L  LE  +  H  +   G+  D+V  + L++ Y+K    +E+AR VF++M  ++VI+W
Sbjct: 275 TNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITW 334

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           N LI  Y  +G+ ++A+++F+QM L  + PN +T   VLSAC+  G   +G +   ++  
Sbjct: 335 NILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQG-KAVHALIA 393

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEA---FALIRGAPFKTTKNMWAA------------ 506
             + K   +    ++ +  R G LD+    FA IR     +   + AA            
Sbjct: 394 SGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLE 453

Query: 507 -------------------LLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNI 544
                               L+AC   G L+ G      +   +G+ P+   +++ ++++
Sbjct: 454 HFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPD-YRHFLCMVDL 512

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLP-ACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
            + +G+L+ A  +I       +  LP A +W          LSG + H  TK   R  D+
Sbjct: 513 LSRAGRLEAAENLIHD-----MPFLPDAVAWTS-------LLSGCKLHNDTKRAARVADK 560

Query: 604 M 604
           +
Sbjct: 561 L 561



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 159/293 (54%), Gaps = 4/293 (1%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+ +CG + DA  +F  +   N VS  +I+A    +G Y EA   +  +  E        
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGD-NVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           F   I   +  + +  G+ LH+  L+    + ++ +  ALI MY++C  +E A+  FDEM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEM---RDSGVKMDHFTFSMIIRICTRLASLE 349
            +KT V WN +IAGY+ +G    AL +Y +M      G+K D  TFS  +  CT +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             ++  A  V  G+  D +  +AL++ YSK G +E AR VFD++  ++VI+WN +I+GY 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
             G   +A+ELF++M  N  +PN VTF+ +L+AC+     E+G  I + +  D
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVRED 293


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 209/581 (35%), Positives = 321/581 (55%), Gaps = 23/581 (3%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G DV  +T  +++  C    ++   K V S  + + FE  +   N +L M+ +CG +  A
Sbjct: 246 GIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGA 305

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
            R+F++M ERN+VS   +IAG    G    A  L   + +E          +++ A A  
Sbjct: 306 LRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARS 365

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             +  GK +H          N+FV  AL+DMY+KCGS+E A  VF  M  K  + WNT+I
Sbjct: 366 GSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI 425

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
                                  +K D  T + ++  C  L++LE  K+ H  ++R+G+ 
Sbjct: 426 GE---------------------LKPDSRTMACVLPACASLSALERGKEIHGYILRNGYS 464

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D    +ALVD Y K G +  AR +FD +  K+++SW  +IAGYG HG G EA+  F +M
Sbjct: 465 SDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEM 524

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
              G+ P+ V+F+++L ACS SGL E+GW  F  M  D  I+P+  HYACM++LL R G 
Sbjct: 525 RDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGN 584

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L +A+  +   P      +W ALL  CR   ++EL +  AE+++ +EPE    YV+L NI
Sbjct: 585 LSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEPENTGYYVLLANI 644

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ-SHVQTKEIYRKVDR 603
           Y  + K +E   +   + ++GLR  P CSWIE+K + ++F+SG+  SH  +K I   + +
Sbjct: 645 YAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKNIESLLKK 704

Query: 604 MMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           M  ++ + G+ P+ K  L + DE Q++  L  HSEKLA+AFGL+       +++ ++ R+
Sbjct: 705 MRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLTLPPRKTIRVTKNLRV 764

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH   K ++  T REIV+RD++RFHHFKDG CSC  +W
Sbjct: 765 CGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 135/519 (26%), Positives = 228/519 (43%), Gaps = 109/519 (21%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           + TY +++  C GL+S  + K+V S + S     D  +  +++  +  CG + + RR+FD
Sbjct: 99  TKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFD 158

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLF----------------LDLWEEFSDCGSRT 233
            M ++N+   N +++     GD+ E+  LF                 +L+++  D    +
Sbjct: 159 TMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVIS 218

Query: 234 FATMIRA--SAGLE---------------------------------LISVGKQLHSCAL 258
           + +MI    S GL                                   +S+GK +HS A+
Sbjct: 219 WNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAI 278

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
           K  F   +  S  L+DMYSKCG ++ A  VF++M E+  V W ++IAGY   G S+ A+ 
Sbjct: 279 KSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIK 338

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378
           L  +M   GVK+D    + I+  C R  SL++ K  H  +  +    ++   +AL+D Y+
Sbjct: 339 LLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYA 398

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
           K G +E A  VF  M+ K++ISWN +I        GE             ++P+  T   
Sbjct: 399 KCGSMEAANSVFSTMVVKDIISWNTMI--------GE-------------LKPDSRTMAC 437

Query: 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPR------------------------------ 468
           VL AC+     ERG EI   + R+     R                              
Sbjct: 438 VLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD 497

Query: 469 AMHYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWAALLTACRVNGNLELG---KF 522
            + +  MI   G  G  +EA A    +R A  +  +  + ++L AC  +G LE G    +
Sbjct: 498 LVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFY 557

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
             +  + +EP KL +Y  ++++ + +G L +A E + TL
Sbjct: 558 IMKNDFNIEP-KLEHYACMVDLLSRTGNLSKAYEFMETL 595



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 132/280 (47%), Gaps = 51/280 (18%)

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
           S+  ++T+ ++++  AGL+  + GK++HS       G +  +   L+  Y+ CG +++ +
Sbjct: 95  SELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGR 154

Query: 287 GVFDEMSEKTT------------------------------------------------- 297
            VFD M +K                                                   
Sbjct: 155 RVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDR 214

Query: 298 --VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             + WN++I+GY  +G +E  L +Y +M   G+ +D  T   ++  C    +L   K  H
Sbjct: 215 DVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVH 274

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
           +  ++  F   I  ++ L+D YSK G ++ A  VF+KM  +NV+SW ++IAGY   GR +
Sbjct: 275 SLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSD 334

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
            A++L +QM   G++ + V   ++L AC+RSG  + G ++
Sbjct: 335 GAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 102/223 (45%), Gaps = 28/223 (12%)

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H  +LK      +F SC  I + +      D Q             +N  I  +   G 
Sbjct: 32  IHKPSLKTKIFSPIFSSCIPIRISATPTRTIDHQ----------VTDYNAKILHFCQLGD 81

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            E A++L    + S  +++  T+  ++++C  L S    K+ H+ +  +  G+D      
Sbjct: 82  LENAMELICMCQKS--ELETKTYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLK 139

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML---LNGM 429
           LV FY+  G +++ R VFD M  KNV  WN +++ Y   G  +E++ LF+ M+   + G 
Sbjct: 140 LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 199

Query: 430 RPNH-------------VTFLAVLSACSRSGLSERGWEIFQSM 459
           RP               +++ +++S    +GL+ERG  I++ M
Sbjct: 200 RPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQM 242


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/628 (32%), Positives = 354/628 (56%), Gaps = 68/628 (10%)

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER-NLVSCNM 201
           ++S  + K++ + +L T   P   + + +L ++    ++ D+  +F+ +P     ++   
Sbjct: 18  VKSKSQAKQLHAQILRTSL-PSPSLLSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKS 76

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           II      G +L +   F+ +           F +++++   ++ +  G+ +H C +++G
Sbjct: 77  IIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLG 136

Query: 262 FGDNVFVSCALIDMYSKCGSIEDA---QGVFDE--------------------------M 292
            G +++   AL++MYSK  S+E+    + VFDE                          M
Sbjct: 137 MGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMM 196

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            ++  V WNT+I+G A +G  E+AL +  EM ++ ++ D FT S ++ I     +L   K
Sbjct: 197 PKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGK 256

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           + H   +R+G+  D+   S+L+D Y+K  R++D+  VF  +   + ISWN++IAG   +G
Sbjct: 257 EIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNG 316

Query: 413 RGEEAVELFEQML------------------------------------LNGMRPNHVTF 436
             +E ++ F+QML                                    + G++PN+V F
Sbjct: 317 MFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRMEGVKPNYVAF 376

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
           +AVL+ACS +GL +  W+ F SM++D++I P   HYA + +LLGR G L+EA+  I    
Sbjct: 377 MAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMH 436

Query: 497 FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
            + T ++W+ LL ACRV+ N+EL +  ++KL+ ++P+ +  YV+L NIY+++G+ K+A +
Sbjct: 437 IEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARK 496

Query: 557 VIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPE 616
           +   +R KG++  PACSWIE+K + H F++GD+SH     I   +  ++ ++ + GYV +
Sbjct: 497 LRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLD 556

Query: 617 EKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAM 675
              +L DV+E+++R +L  HSE+LA+ FG+I+T   T +++ ++ R+C DCH A K I+ 
Sbjct: 557 TTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISK 616

Query: 676 VTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + GREIVVRD SRFHHFKDG CSCGD+W
Sbjct: 617 IVGREIVVRDNSRFHHFKDGKCSCGDFW 644


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/617 (35%), Positives = 360/617 (58%), Gaps = 15/617 (2%)

Query: 99  SQIEKLVLNKRYREALE-LFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           + +  LV +  + EA++ L++++    G      T+ + + AC  L  +   + + +Y++
Sbjct: 89  TMVSVLVQSGMFDEAVQTLYDMVAL--GVRPDGVTFASALPACSRLELLDVGREMHAYVI 146

Query: 158 STG-FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE--RNLVSCNMIIAGMIDSGDYLE 214
                  + ++ + ++ M+     +  AR++FD +P+  + L   N +I G   +G   E
Sbjct: 147 KDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEE 206

Query: 215 AFLLFLDLWEE--FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCAL 272
           A  LF  +  E  F  C + T A+++ A A  E  +  + +H   +K G   N FV  AL
Sbjct: 207 ALRLFARMEAEAGFVPCET-TMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNAL 265

Query: 273 IDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR---DSGVK 329
           +DMY++ G  + A+ +F  +     V WNT+I G  + G+  +A  L  EM+   + GV 
Sbjct: 266 MDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVV 325

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            +  T   ++  C  LA+    K+ H   VRH    D+   SALVD Y+K G +  +R V
Sbjct: 326 PNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAV 385

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGL 448
           FD++  +N I+WN LI  YG HG G EA  LF++M  +G  RPN VTF+A L+ACS SG+
Sbjct: 386 FDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGM 445

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK-NMWAAL 507
            +RG ++F +M RDH ++P     AC++++LGR G LDEA+A++        + + W+ +
Sbjct: 446 VDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTM 505

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           L ACR++ N+ LG+ A E+L  +EPE+ S+YV+L NIY+++G+   AAEV   +RR+G+ 
Sbjct: 506 LGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVA 565

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ 627
             P CSWIEV    H F++G+ +H  ++E++  ++ +  E+   GY P+   +L D+D+ 
Sbjct: 566 KEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDG 625

Query: 628 EQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
           ++  VL  HSEKLA+AFGL+  +    +++ ++ R+C DCH A K ++ + GREIV+RD 
Sbjct: 626 DKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDV 685

Query: 687 SRFHHFKDGMCSCGDYW 703
            RFHHF++G CSCGDYW
Sbjct: 686 RRFHHFRNGQCSCGDYW 702



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/356 (29%), Positives = 178/356 (50%), Gaps = 11/356 (3%)

Query: 169 NRVLLMHVRCGMMIDARRLF-DEMPER-NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           N +L M+ R G++ DA+RLF    P R ++V+ N +++ ++ SG + EA     D+    
Sbjct: 55  NALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALG 114

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMG-FGDNVFVSCALIDMYSKCGSIEDA 285
                 TFA+ + A + LEL+ VG+++H+  +K      N FV+ AL+DMY+    +  A
Sbjct: 115 VRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKA 174

Query: 286 QGVFDEM--SEKTTVGWNTIIAGYALHGYSEEALDLYYEMR-DSGVKMDHFTFSMIIRIC 342
           + VFD +  S K    WN +I GYA  G  EEAL L+  M  ++G      T + ++  C
Sbjct: 175 RQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPAC 234

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
            R  +    +  H  +V+ G   +    +AL+D Y++ G+ + AR +F  +   +V+SWN
Sbjct: 235 ARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWN 294

Query: 403 ALIAGYGNHGRGEEAVEL---FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
            LI G    G   +A +L    +Q+   G+ PN +T + +L  C+      RG EI    
Sbjct: 295 TLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYA 354

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
            R H +       + ++++  + G L  + A+    P + T   W  L+ A  ++G
Sbjct: 355 VR-HALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTIT-WNVLIMAYGMHG 408



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 150/307 (48%), Gaps = 30/307 (9%)

Query: 231 SRTFATMIRA----SAGLELISVGKQLHSCALKMGF--GDNVFVSCALIDMYSKCGSIED 284
           S T  +++RA     A    + +G++ H+ ALK G   G   F   AL+ MY++ G + D
Sbjct: 10  SFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVAD 69

Query: 285 AQGVFDEMS--EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           AQ +F   +      V WNT+++     G  +EA+   Y+M   GV+ D  TF+  +  C
Sbjct: 70  AQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPAC 129

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVAN----SALVDFYSKWGRIEDARHVFDKML--CK 396
           +RL  L+  ++ HA +++     ++ AN    SALVD Y+   ++  AR VFD +    K
Sbjct: 130 SRLELLDVGREMHAYVIKDD---ELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGK 186

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLN-GMRPNHVTFLAVLSACSRSGL-----SE 450
            +  WNA+I GY   G  EEA+ LF +M    G  P   T  +VL AC+RS       + 
Sbjct: 187 QLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAV 246

Query: 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
            G+ + + M+ +  ++   M    M   LG+  +    FA++      +    W  L+T 
Sbjct: 247 HGYVVKRGMAGNRFVQNALMD---MYARLGKTDVARRIFAMVDLPDVVS----WNTLITG 299

Query: 511 CRVNGNL 517
           C V G++
Sbjct: 300 CVVQGHV 306



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 96/195 (49%), Gaps = 9/195 (4%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRL----ASLEHAKQAHAGLVRHGF--GLDIVANSALVDF 376
           M   G  +  FT   ++R  + L    A++   ++AHA  +++G   G    A +AL+  
Sbjct: 1   MLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSM 60

Query: 377 YSKWGRIEDARHVFDKMLCK--NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           Y++ G + DA+ +F        +V++WN +++     G  +EAV+    M+  G+RP+ V
Sbjct: 61  YARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGV 120

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           TF + L ACSR  L + G E+   + +D ++   +   + ++++      + +A  +   
Sbjct: 121 TFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDM 180

Query: 495 APFKTTK-NMWAALL 508
            P    +  MW A++
Sbjct: 181 VPDSGKQLGMWNAMI 195


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/597 (35%), Positives = 322/597 (53%), Gaps = 28/597 (4%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N    +A+ LF  ++   G    S+ Y +L+ +C+G   +   K++ S+++      ++ 
Sbjct: 166 NGELEKAIRLFSDMQ-ASGIRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANIT 224

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   +  M+VRCG +  A+ +FD M  +N V+   ++ G   +     A  LF  +  E 
Sbjct: 225 VETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEG 284

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            +     F+ +++    LE   +GKQ+HS  +K+G    V V   L+D Y KCG IE A 
Sbjct: 285 VELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAY 344

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
             F  +SE   V W+ +I+G++  G  E+ + ++  +R  GV ++ F ++ + + C   A
Sbjct: 345 RSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQA 404

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           +L    QAH   ++ G    +   SA+V  YSK GR++ AR  F+ +   + ++W A+I+
Sbjct: 405 NLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIIS 464

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GY  HG   EA+  F +M   G+RPN VTF+AVL+ACS SGL     +   SMSRD+ +K
Sbjct: 465 GYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVK 524

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P   HY CMI+   R GLL EA  LI   PF+     W +LL  C  + +L+LGK AAE 
Sbjct: 525 PTIDHYDCMIDTYSRAGLLXEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAEN 584

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           L+ ++P   + Y++L N+Y++ GK +EA  V + +  + L+   +CSWI VK Q H    
Sbjct: 585 LFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKGQVH---- 640

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLI 646
                       R V  +  E      +P  K  L D           HSEKLA+AFGLI
Sbjct: 641 ------------RPVRLLNEEDDVSCSLPARKEQLLD-----------HSEKLAIAFGLI 677

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +T D  P+ + ++ R C DCH   K ++MVTGR+IVVRD++RFHHFK G CSC DYW
Sbjct: 678 STEDNAPILVFKNLRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHFKSGKCSCNDYW 734



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 128/461 (27%), Positives = 230/461 (49%), Gaps = 14/461 (3%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           + +EA +  + ++ +    V   +Y  L  AC  LRS+ + + +   +  T   P   + 
Sbjct: 67  KLKEAHDFLKEMD-DADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRRTVKNPSGSIE 125

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N +L M+  CG  ID +++FDEM  +NLVS  ++I+    +G+  +A  LF D+      
Sbjct: 126 NCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIR 185

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
             S  + +++++  G   + +GKQ+HS  ++     N+ V  A+ +MY +CG +E A+ V
Sbjct: 186 PNSAVYMSLLQSCLGPSFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLV 245

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD M  +  V W  ++ GY      E AL+L+  M   GV++D F FS+++++C  L   
Sbjct: 246 FDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDW 305

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
           +  KQ H+ +V+ G   ++   + LVDFY K G IE A   F ++   N +SW+ALI+G+
Sbjct: 306 DMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGF 365

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
              GR E+ +++F  +   G+  N   + +V  AC+       G     S +    IK  
Sbjct: 366 SQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMG-----SQAHGDAIKRG 420

Query: 469 AMHY----ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL--ELGKF 522
            + Y    + M+ +  + G LD A         +     W A+++    +GN    LG F
Sbjct: 421 LVSYLYGESAMVTMYSKCGRLDYARRAFESID-EPDAVAWTAIISGYAYHGNAAEALGFF 479

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
              + YG+ P  ++ ++ +L   + SG + EA + + ++ R
Sbjct: 480 RRMQSYGVRPNAVT-FIAVLTACSHSGLVAEAKQYLGSMSR 519


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 223/615 (36%), Positives = 337/615 (54%), Gaps = 46/615 (7%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S  Y  L+S     +S++++K+  + +++T         N++L +   C  +  A +LFD
Sbjct: 13  SDHYSRLVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLKL-AACASLSYAHKLFD 71

Query: 190 EMPERNLVSCN-MIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELI 247
           ++P+ +L   N MI A  +       + ++F  L ++     +R +F     A      +
Sbjct: 72  QIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGV 131

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF------------------ 289
             G+Q+   A+K+G  +NVFV  ALI MY K G + ++Q VF                  
Sbjct: 132 QEGEQVRIHAVKVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAY 191

Query: 290 -------------DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
                        D M E+  V W+TIIAGY   G   EALD +++M   G K + +T  
Sbjct: 192 VGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLV 251

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF-DKMLC 395
             +  C+ L +L+  K  HA + +    ++    ++++D Y+K G IE A  VF +  + 
Sbjct: 252 SALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVK 311

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           + V  WNA+I G+  HG   EA+ +FEQM +  + PN VTF+A+L+ACS   + E G   
Sbjct: 312 QKVWLWNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLY 371

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F+ M  D+ I P   HY CM++LL R GLL EA  +I   P      +W ALL ACR+  
Sbjct: 372 FRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYK 431

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG-----LRMLP 570
           ++E G      + GM+P  +  +V+L NIY++SG+  EA    R LR K       + +P
Sbjct: 432 DMERGYRIGRIIKGMDPNHIGCHVLLSNIYSTSGRWNEA----RILREKNEISRDRKKIP 487

Query: 571 ACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR 630
            CS IE+K   H FL GDQSH Q++EIY  +D M  ++   GYVPE   LL D+D++E +
Sbjct: 488 GCSSIELKGTFHQFLVGDQSHPQSREIYSFLDEMTTKLKSAGYVPELGELLHDIDDEEDK 547

Query: 631 --VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
              LS HSEKLA+AFGL+NT++ TP++IV++ R+C DCH A K I+ V  R I+VRD +R
Sbjct: 548 ETALSVHSEKLAIAFGLMNTANGTPIRIVKNLRVCGDCHQATKFISKVYNRVIIVRDRTR 607

Query: 689 FHHFKDGMCSCGDYW 703
           +HHF+DG+CSC DYW
Sbjct: 608 YHHFEDGICSCKDYW 622


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/543 (38%), Positives = 322/543 (59%), Gaps = 9/543 (1%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           EPD++  N +L  ++    +  AR  FD+MP ++  S N +I+G   +G   +A  LFL 
Sbjct: 65  EPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLV 124

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           +        S ++  MI        + + KQL   A       +V    A+I  + K G 
Sbjct: 125 MPVR----NSVSWNAMISGYVESGDLDLAKQLFEVAPV----RSVVAWTAMITGFMKFGK 176

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           IE A+  F+EM  K  V WN +IAGY  +  +E  L L+  M +SG + +  + S ++  
Sbjct: 177 IELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLG 236

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C+ L++L+  KQ H  + +     +I A ++L+  Y K G +EDA  +F  M  K+V++W
Sbjct: 237 CSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTW 296

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           NA+I+GY  HG GE+A+ LF++M   GM+P+ +TF+AVLSAC+ +G  + G E F SM R
Sbjct: 297 NAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLGIEYFNSMVR 356

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           D+ ++ +  HY C+++LLGR G L EA  LI+  PFK    ++  LL ACR++ NLEL +
Sbjct: 357 DYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSAIFGTLLGACRIHKNLELAE 416

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
           FAA+ L  ++PE  + YV L N+Y +  +    A V R+++   +   P  SWIEVK   
Sbjct: 417 FAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMKDNKVIKTPGYSWIEVKSVV 476

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLA 640
           H F SGD+ H +   I+ K++ +  ++   GYVP+ +  L DV +EQ++++L  HSEKLA
Sbjct: 477 HEFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDLEYALHDVGEEQKKQILLRHSEKLA 536

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +A+GLI     TP+++ ++ R+C DCH+A K I+ + GR I+VRD +RFHHF+ G CSCG
Sbjct: 537 IAYGLIRMPLGTPIRVFKNLRVCGDCHSATKYISAIEGRVIIVRDTTRFHHFRQGECSCG 596

Query: 701 DYW 703
           DYW
Sbjct: 597 DYW 599



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 163/363 (44%), Gaps = 74/363 (20%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA---------------- 308
           NV  S  +I  + + G +  A  VF+ M+ KTTV WN+++AGY+                
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 309 ---------------LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
                          LH    E+  L++   D     D  +++ +I   ++   ++ A++
Sbjct: 64  PEPDIFSYNIMLACYLHNADVESARLFF---DQMPVKDTASWNTMISGFSQNGMMDQARE 120

Query: 354 AH---------------AGLVRHGFGLDI-------------VANSALVDFYSKWGRIED 385
                            +G V  G  LD+             VA +A++  + K+G+IE 
Sbjct: 121 LFLVMPVRNSVSWNAMISGYVESG-DLDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIEL 179

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           A   F++M  KN+++WNA+IAGY  + + E  ++LF++M+ +G RPN  +  +VL  CS 
Sbjct: 180 AEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSN 239

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG---REGLLDEAFALIRGAPFKTTKN 502
               + G ++ Q + +     P + +      LL    + G L++A+ L    P K    
Sbjct: 240 LSALKLGKQVHQLICKS----PVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVT 295

Query: 503 MWAALLTACRVNGNLELGKFAAEKLY--GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560
            W A+++    +G  E   +  +K+   GM+P+ ++ +V +L+  N +G +    E   +
Sbjct: 296 -WNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWIT-FVAVLSACNHAGFVDLGIEYFNS 353

Query: 561 LRR 563
           + R
Sbjct: 354 MVR 356



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 99/226 (43%), Gaps = 6/226 (2%)

Query: 71  KPNKIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGS 130
           K  KI   E     +P   +   +A I   IE    N +    L+LF+ +  E GF    
Sbjct: 173 KFGKIELAEKYFEEMPMKNLVTWNAMIAGYIE----NCQAENGLKLFKRM-VESGFRPNP 227

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           S+  +++  C  L +++  K+V   +  +    ++     +L M+ +CG + DA +LF  
Sbjct: 228 SSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLV 287

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           MP++++V+ N +I+G    G   +A  LF  + +E       TF  ++ A      + +G
Sbjct: 288 MPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAGFVDLG 347

Query: 251 -KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
            +  +S     G          ++D+  + G + +A  +  +M  K
Sbjct: 348 IEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFK 393


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  384 bits (986), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/577 (35%), Positives = 327/577 (56%), Gaps = 48/577 (8%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY A++ AC     + E  +V ++++  G   D ++ +  + M+   G +++ARR+ D+ 
Sbjct: 140 TYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDK 199

Query: 192 P-ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
             E + V  N +I G +  G+   A  LF                               
Sbjct: 200 GGEVDAVCWNAMIDGYLRFGEVEAARELF------------------------------- 228

Query: 251 KQLHSCALKMGFGDNVFVSC--ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
                     G  D   +S   A+I  +S+CG +E A+  FDEM E+  + W+ +I GY 
Sbjct: 229 ---------EGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYI 279

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
             G   EAL+++++M+   ++   F    ++  C  L +L+  +  H    R+   LD V
Sbjct: 280 QEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGV 339

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             ++LVD Y+K GRI+ A  VF+KM  K V SWNA+I G   HGR E+A++LF +M    
Sbjct: 340 LGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---D 396

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           + PN +TF+ VL+AC+  GL ++G  IF SM +++ ++P+  HY C+++LLGR GLL EA
Sbjct: 397 IYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEA 456

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
             ++   P + T  +W ALL ACR +GN+ELG+   + L  +EP+    Y +L NIY  +
Sbjct: 457 EKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKA 516

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEV-KKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
           G+ +E  EV + ++ +G++  P  S I++ + + H F+ GD SH Q K+IY+ +D++   
Sbjct: 517 GRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKER 576

Query: 608 ISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
           +   GY P+   +L D+DE+E+    + HSEKLA+ FGLINTS  T ++IV++ R+C DC
Sbjct: 577 LQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDC 636

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           H+A KLI+ V  REI+VRD  R+HHF++G CSC D+W
Sbjct: 637 HSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 157/327 (48%), Gaps = 41/327 (12%)

Query: 114 LELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM---RNR 170
           +E   IL+ +GG +V +  ++A+I   +    +   + +F  M      PD  M    N 
Sbjct: 190 VEARRILDDKGG-EVDAVCWNAMIDGYLRFGEVEAARELFEGM------PDRSMISTWNA 242

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++    RCGM+  AR  FDEM ER+ +S + +I G I  G ++EA  +F  + +E     
Sbjct: 243 MISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPR 302

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
                +++ A A L  +  G+ +H+ A +     +  +  +L+DMY+KCG I+ A  VF+
Sbjct: 303 KFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFE 362

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           +MS K    WN +I G A+HG +E+A+DL+ +M    +  +  TF  ++  C        
Sbjct: 363 KMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLNAC-------- 411

Query: 351 AKQAHAGLVRHG----------FGLD--IVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
              AH GLV+ G          +G++  I     +VD   + G + +A  V   +  +  
Sbjct: 412 ---AHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPT 468

Query: 399 IS-WNALIAGYGNHGRGEEAVELFEQM 424
            + W AL+     HG     VEL E++
Sbjct: 469 PAVWGALLGACRKHGN----VELGERV 491



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 154/325 (47%), Gaps = 20/325 (6%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCG-----SIEDAQGVFDEMSEKTTVGWNTIIA 305
           KQ H+  L+ G   + +++ +L+  Y+        S E +  VFD + +     WN +I 
Sbjct: 52  KQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIK 111

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
               +    +A+ LYYEM  +  + + +T+  +++ C+    +    Q HA LV+HG G 
Sbjct: 112 VCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGLGG 171

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQM 424
           D    S+ +  Y+ +GR+ +AR + D    + + + WNA+I GY   G  E A ELFE M
Sbjct: 172 DGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFEGM 231

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
               M     T+ A++S  SR G+ E   E F  M    +I      ++ MI+   +EG 
Sbjct: 232 PDRSMIS---TWNAMISGFSRCGMVEVAREFFDEMKERDEIS-----WSAMIDGYIQEGC 283

Query: 485 LDEA---FALIRGAPFKTTKNMWAALLTACRVNGNLELGKF--AAEKLYGMEPEKLSNYV 539
             EA   F  ++    +  K +  ++L+AC   G L+ G++     K   ++ + +    
Sbjct: 284 FMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLG-T 342

Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRK 564
            L+++Y   G++  A EV   +  K
Sbjct: 343 SLVDMYAKCGRIDLAWEVFEKMSNK 367


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/574 (34%), Positives = 341/574 (59%), Gaps = 8/574 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           ++ A+++ C     + + +R+F  M       D+   N ++  +++ G + DA +LF +M
Sbjct: 130 SWTAMVNGCFRFGMVDQAERLFCQMPV----KDIAAWNAMVHGYLQFGKVDDALKLFKQM 185

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P +N++S   +I G+  +    EA  LF ++        SRTF  +I A A      +G 
Sbjct: 186 PRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIKSTSRTFTCVITACANAPAFHMGT 245

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           Q+H   +K GF    +V+ +LI +Y+ C   ED++ VF EM  +    W  +++GY+L+ 
Sbjct: 246 QVHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHEKVAVWTALLSGYSLNR 305

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             E+AL+++ EM  + +  +  TF+  +  C+ L +L+  K+ H   V+ G G      +
Sbjct: 306 KHEDALNVFSEMIRNSILPNQSTFASGLNSCSALGTLDWGKEIHGVAVKLGLGTVAFVGN 365

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           +LV  YS  G + DA  VF ++  K+++SWN++I G   HGRG+ A  +F QM+     P
Sbjct: 366 SLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEP 425

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRD-HKIKPRAMHYACMIELLGREGLLDEAFA 490
           + +TF  +LSACS  G  ++G ++F  +S   + I  +  HY CM+++LGR G L EA  
Sbjct: 426 DEITFTGLLSACSHCGFLQKGRKLFYYISSGLNHIDRKIQHYTCMVDILGRCGELKEAEK 485

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
           LI     K  + +W ALL+ACR++ +++ G+ AA  ++ ++ +  + YV+L NIY S+G+
Sbjct: 486 LIESMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGR 545

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
               +++   +++KG+   P  SW+ ++ + H F SGD+ H     I+ K++ +  ++ +
Sbjct: 546 WSSVSKLRVKMKQKGIMKKPGSSWVVIRGKKHEFFSGDRPHCL--RIFEKLEFLREKLKE 603

Query: 611 HGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
            GYVP+ ++ L DV DEQ++ +L YHSE+LA+AFGLINT + + + ++++ R+C DCH  
Sbjct: 604 LGYVPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSTVTVMKNLRVCEDCHTV 663

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           IKLI+ V G +IV+RD +RFHHFK+GMCSCGDYW
Sbjct: 664 IKLISRVVGCKIVLRDPTRFHHFKNGMCSCGDYW 697



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 115/472 (24%), Positives = 219/472 (46%), Gaps = 57/472 (12%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           R + E + VF  + S    P + +  +++  + R   ++DA  LFDEMP R++VS N +I
Sbjct: 49  RRLDEAREVFDQVPS----PHVSLYTKMISGYTRSNRLVDALNLFDEMPLRDVVSWNSMI 104

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
           +G ++ GD   A  +F    +E  +    ++  M+       ++   ++L  C + +   
Sbjct: 105 SGCVECGDIDTAVKMF----DEMPERSVVSWTAMVNGCFRFGMVDQAERLF-CQMPV--- 156

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
            ++    A++  Y + G ++DA  +F +M  K  + W T+I G   +  S EAL+L+  M
Sbjct: 157 KDIAAWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNM 216

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
               +K    TF+ +I  C    +     Q H  +++ GF  +    ++L+  Y+   R 
Sbjct: 217 LRCCIKSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCKRT 276

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           ED+R VF +M+ + V  W AL++GY  + + E+A+ +F +M+ N + PN  TF + L++C
Sbjct: 277 EDSRKVFGEMVHEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQSTFASGLNSC 336

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA------------- 490
           S  G  + G EI   ++    +   A     ++ +    G +++A +             
Sbjct: 337 SALGTLDWGKEI-HGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSW 395

Query: 491 -----------------LIRGAPFKTTKN----MWAALLTACRVNGNLELGK----FAAE 525
                            +I G   +  K      +  LL+AC   G L+ G+    + + 
Sbjct: 396 NSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLQKGRKLFYYISS 455

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG-----LRMLPAC 572
            L  ++  K+ +Y  +++I    G+LKEA ++I ++  K      L +L AC
Sbjct: 456 GLNHID-RKIQHYTCMVDILGRCGELKEAEKLIESMVVKPNEMVWLALLSAC 506



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 163/346 (47%), Gaps = 33/346 (9%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N+R  EAL LF+ +         S T+  +I+AC    +     +V  +++ +GF  + Y
Sbjct: 203 NERSGEALNLFKNM-LRCCIKSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEY 261

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   ++ ++  C    D+R++F EM    +     +++G   +  + +A  +F ++    
Sbjct: 262 VTASLITLYANCKRTEDSRKVFGEMVHEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNS 321

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 TFA+ + + + L  +  GK++H  A+K+G G   FV  +L+ MYS  G++ DA 
Sbjct: 322 ILPNQSTFASGLNSCSALGTLDWGKEIHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAV 381

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VF E+ +K+ V WN+II G A HG  + A  ++ +M     + D  TF+ ++  C+   
Sbjct: 382 SVFIEIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACS--- 438

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
                   H G ++ G  L    +S L              H+  K     +  +  ++ 
Sbjct: 439 --------HCGFLQKGRKLFYYISSGL-------------NHIDRK-----IQHYTCMVD 472

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
             G  G  +EA +L E M++   +PN + +LA+LSAC      +RG
Sbjct: 473 ILGRCGELKEAEKLIESMVV---KPNEMVWLALLSACRMHSDVDRG 515


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 213/608 (35%), Positives = 340/608 (55%), Gaps = 6/608 (0%)

Query: 99  SQIEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           S +   V N  Y EA++ F E+L+   GF    +   +L SA   L  +   +   +Y +
Sbjct: 337 SMLSCYVQNSFYAEAIDFFGEMLQH--GFQPDHACVVSLSSALGHLSRLNNGREFHAYAI 394

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
                 DL + N ++ M+++CG +  + ++F+ M  R+ +S   I+A    S  + EA  
Sbjct: 395 KQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALE 454

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           + L+L +E     S    +++    GL+ IS+ KQ+H  A++ G  D + +   LID+Y 
Sbjct: 455 MILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGLLD-LILENRLIDIYG 513

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           +CG  + +  +F  + +K  V W ++I     +G    A+ L+ EM+ + ++ D      
Sbjct: 514 ECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVS 573

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           I+     L+SL   KQ H  L+R  F ++    S+LVD YS  G +  A  VF++  CK+
Sbjct: 574 ILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKD 633

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           V+ W A+I   G HG G++A++LF++ML  G+ P+HV+FLA+L ACS S L E G     
Sbjct: 634 VVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLD 693

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
            M   +++KP   HYAC++++LGR G  +EA+  I+  P      +W ALL ACRV+ N 
Sbjct: 694 IMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNY 753

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
            L   AA KL  +EP+   NY+++ N++   GK   A E    +  +GLR  PACSWIE+
Sbjct: 754 GLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEI 813

Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH-GYVPEEKTLLPDVDEQEQ-RVLSYH 635
               H F SGD  H  ++ I+ K+  +   + +  GYV + + +L D  E+E+  +L  H
Sbjct: 814 GNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREGGYVEDTRFVLHDTSEEEKIDMLHKH 873

Query: 636 SEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
           SE++A+AFGLI+T    P++I ++ R+C DCH   KL++ +  R+IVVRDA+RFHHF  G
Sbjct: 874 SERIAIAFGLISTRPGMPIRIAKNLRVCGDCHEFTKLVSKLFERDIVVRDANRFHHFSGG 933

Query: 696 MCSCGDYW 703
            CSC D+W
Sbjct: 934 SCSCEDFW 941



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 174/303 (57%), Gaps = 9/303 (2%)

Query: 148 EVKRVFSYMLSTGF---EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           E ++V ++ ++TG    + D ++  +++ M+ RCG + DARRLF+ MP R + S N ++ 
Sbjct: 75  EGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVG 134

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSR---TFATMIRASAGLELISVGKQLHSCALKMG 261
             + SG   EA  ++  +    +   +    T A++++A         G ++H  A+K+G
Sbjct: 135 AYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVG 194

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE--KTTVGWNTIIAGYALHGYSEEALDL 319
              +  V+ ALI MY+KCG ++ A  VF+ + +  +    WN++++G   +G + EAL L
Sbjct: 195 LDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALAL 254

Query: 320 YYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379
           +  M+ +G  M+ +T   ++++C  L  L   ++ HA L++ G  L+I  N+ LV  Y+K
Sbjct: 255 FRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLV-MYAK 313

Query: 380 WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
           +GR++ A  VF ++  K+ ISWN++++ Y  +    EA++ F +ML +G +P+H   +++
Sbjct: 314 YGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSL 373

Query: 440 LSA 442
            SA
Sbjct: 374 SSA 376



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/218 (29%), Positives = 112/218 (51%), Gaps = 8/218 (3%)

Query: 250 GKQLHSCALKMGF---GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           G+Q+H+ A+  G     D+ F++  L+ MY +CG ++DA+ +F+ M  +T   WN ++  
Sbjct: 76  GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGA 135

Query: 307 YALHGYSEEALDLYYEMRDS---GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           Y   G + EA+ +Y  MR S   G   D  T + +++ C          + H   V+ G 
Sbjct: 136 YLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGL 195

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFD--KMLCKNVISWNALIAGYGNHGRGEEAVELF 421
               +  +AL+  Y+K G ++ A  VF+  +   ++V SWN++++G   +GR  EA+ LF
Sbjct: 196 DKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALF 255

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
             M   G   N  T +AVL  C+  GL   G E+  ++
Sbjct: 256 RGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAAL 293


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/592 (35%), Positives = 333/592 (56%), Gaps = 36/592 (6%)

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVL---LMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           E+K++ + ML TG   D Y   + L   +       +  A+ +FD     +    N++I 
Sbjct: 29  ELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIR 88

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
           G   S +   + LL+  +    +   + TF ++++A + L       Q+H+   K+G+ +
Sbjct: 89  GFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYEN 148

Query: 265 NVFVSCALIDMYS-------------------------------KCGSIEDAQGVFDEMS 293
           +V+   +LI+ Y+                               K G ++ A  +F +M+
Sbjct: 149 DVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMA 208

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
           EK  + W T+I+GY     ++EAL L++EM++S V+ D+ + +  +  C +L +LE  K 
Sbjct: 209 EKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKW 268

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            H+ L +    +D V    L+D Y+K G +E+A  VF  +  K+V +W ALI+GY  HG 
Sbjct: 269 IHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGH 328

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
           G EA+  F +M   G++PN +TF AVL+ACS +GL E G  IF SM RD+ +KP   HY 
Sbjct: 329 GREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYG 388

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533
           C+++LLGR GLLDEA   I+  P K    +W ALL ACR++ N+ELG+   E L  ++P 
Sbjct: 389 CIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPY 448

Query: 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQ 593
               YV   NI+    K  +AAE  R ++ +G+  +P CS I ++   H FL+GD+SH +
Sbjct: 449 HGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPE 508

Query: 594 TKEIYRKVDRMMLEISKHGYVPEEKTLLPDV--DEQEQRVLSYHSEKLAVAFGLINTSDW 651
            ++I  K   M  ++ ++GYVPE + +L D+  D++ + ++  HSEKLA+ +GLI T   
Sbjct: 509 IEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPG 568

Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T ++I+++ R+C DCH   KLI+ +  R+IV+RD +RFHHF+DG CSCGDYW
Sbjct: 569 TIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/370 (24%), Positives = 174/370 (47%), Gaps = 49/370 (13%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS------IEDAQ 286
           T + + R S   EL    KQ+H+  LK G   + +   A+    S C S      +  AQ
Sbjct: 17  TMSCLQRCSKQEEL----KQIHARMLKTGLMQDSY---AITKFLSFCISSTSSDFLPYAQ 69

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VFD      T  WN +I G++     E +L LY  M  S    + +TF  +++ C+ L+
Sbjct: 70  IVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLS 129

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           + E   Q HA + + G+  D+ A ++L++ Y+  G  + A  +FD++   + +SWN++I 
Sbjct: 130 AFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIK 189

Query: 407 GYGNHGR-------------------------------GEEAVELFEQMLLNGMRPNHVT 435
           GY   G+                                +EA++LF +M  + + P++V+
Sbjct: 190 GYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVS 249

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
               LSAC++ G  E+G  I   +++  +I+  ++    +I++  + G ++EA  + +  
Sbjct: 250 LANALSACAQLGALEQGKWIHSYLNKT-RIRMDSVLGCVLIDMYAKCGEMEEALEVFKNI 308

Query: 496 PFKTTKNMWAALLT--ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
             K+ +  W AL++  A   +G   + KF   +  G++P  ++ +  +L   + +G ++E
Sbjct: 309 KKKSVQ-AWTALISGYAYHGHGREAISKFMEMQKMGIKPNVIT-FTAVLTACSYTGLVEE 366

Query: 554 AAEVIRTLRR 563
              +  ++ R
Sbjct: 367 GKLIFYSMER 376


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/588 (35%), Positives = 329/588 (55%), Gaps = 49/588 (8%)

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDY------L 213
           G +P+ ++  +++ M+   G +  A  +FD +   + +  N II      G        L
Sbjct: 107 GLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXL 166

Query: 214 EAF--LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCA 271
           EA+  + FL L  +     + T   ++++ A L  + +G+ +H   L++G   + +V  +
Sbjct: 167 EAYARMHFLGLLGD-----NFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGAS 221

Query: 272 LIDMYSKCGSIEDAQGVFDEM-------------------------------SEKTTVGW 300
           LIDMY KCG I DA+ +FD+M                                 +  V W
Sbjct: 222 LIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSW 281

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKM--DHFTFSMIIRICTRLASLEHAKQAHAGL 358
             +I+GY  +G++E+AL L+ EM   G +M  +  T   ++  C + A+LE  ++ H   
Sbjct: 282 TAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFA 341

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML--CKNVISWNALIAGYGNHGRGEE 416
              G  L+    +AL   Y+K   + +AR  FD +    KN+I+WN +I  Y +HG G E
Sbjct: 342 NGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVE 401

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
           AV +FE ML  G++P+ VTF+ +LS CS SGL + G   F  M   H ++PR  HYAC++
Sbjct: 402 AVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVV 461

Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
           +LLGR G L EA  LI   P +   ++W ALL ACR + NLE+ + AA +L+ +EP+   
Sbjct: 462 DLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSG 521

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKE 596
           NYV+L N+Y  +G  +E  ++   L+ +G++  P CSWIE+  + H+F+  D+SH Q KE
Sbjct: 522 NYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKE 581

Query: 597 IYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQ 655
           IY+ ++ +  +I   GY+P+   +L D+ E+E+   L+ HSEKLA+AFGL+NT     L+
Sbjct: 582 IYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLR 641

Query: 656 IVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + ++ RIC DCH A K I+ +  REI+VRD +RFH FKDG CSCGDYW
Sbjct: 642 VTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 123/247 (49%), Gaps = 36/247 (14%)

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             I +G+Q H+  +  G   N F++  ++ MY+  G ++ A  VFD +   +++ +N+II
Sbjct: 91  NFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSII 150

Query: 305 AGYALHG---YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
             Y  HG        L+ Y  M   G+  D+FT   +++ C  L+ +   +  H   +R 
Sbjct: 151 RAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRV 210

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA--------------- 406
           G   D    ++L+D Y K G I DAR +FDKM+ +++ SWNALIA               
Sbjct: 211 GLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLF 270

Query: 407 ----------------GYGNHGRGEEAVELFEQMLLNG--MRPNHVTFLAVLSACSRSGL 448
                           GY  +G  E+A+ LF++ML +G  M+PN VT ++VL AC++S  
Sbjct: 271 ERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAA 330

Query: 449 SERGWEI 455
            ERG  I
Sbjct: 331 LERGRRI 337



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 154/338 (45%), Gaps = 50/338 (14%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T   ++ +C  L  +   + V    L  G E D Y+   ++ M+V+CG++ DAR+LFD+M
Sbjct: 183 TLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKM 242

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLF---------------------------LDLWE 224
             R++ S N +IAG +  G+   A  LF                           L L++
Sbjct: 243 IVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFD 302

Query: 225 EFSDCGSR------TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           E    GS       T  +++ A A    +  G+++H  A  +G   N  V  AL  MY+K
Sbjct: 303 EMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAK 362

Query: 279 CGSIEDAQGVFDEMSE--KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
           C S+ +A+  FD +++  K  + WNT+I  YA HG   EA+ ++  M  +GV+ D  TF 
Sbjct: 363 CYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFM 422

Query: 337 MIIRICTRLASLEHAKQAHAGL-------VRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            ++  C+      H+    AGL         H     +   + +VD   + GR+ +A+ +
Sbjct: 423 GLLSGCS------HSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKEL 476

Query: 390 FDKMLCKNVIS-WNALIAGYGNHGRGEEAVELFEQMLL 426
             +M  +   S W AL+A   +H R  E  EL  + L 
Sbjct: 477 ISQMPMQAGPSVWGALLAACRSH-RNLEIAELAARRLF 513



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 128/291 (43%), Gaps = 37/291 (12%)

Query: 330 MDHF----TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385
           + HF    +++ I +  TR   ++  +QAHA +V HG   +    + +V  Y+  G ++ 
Sbjct: 71  LQHFPHPSSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDS 130

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHG---RGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           A  VFD++   + + +N++I  Y  HG        +E + +M   G+  ++ T   VL +
Sbjct: 131 AVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKS 190

Query: 443 CSR-----SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
           C+       G    G  +   +  D  +       A +I++  + G++ +A  L      
Sbjct: 191 CADLSRVCMGRCVHGQGLRVGLEGDFYVG------ASLIDMYVKCGVIGDARKLFDKMIV 244

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLYG-MEPEKLSNYVVLLNIYNSSGKLKEAAE 556
           +   + W AL+      G  E+G   AE L+  ME   + ++  +++ Y  +G  ++A  
Sbjct: 245 RDMAS-WNALIAGYMKEG--EIG--VAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALG 299

Query: 557 VIRTLRRKGLRM----------LPACSW---IEVKKQPHVFLSGDQSHVQT 594
           +   + + G  M          LPAC+    +E  ++ H F +G   H+ +
Sbjct: 300 LFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNS 350


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  384 bits (985), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/550 (34%), Positives = 329/550 (59%), Gaps = 1/550 (0%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +++ A + L S+   K +    + T  + + ++   +L M+ +CG + DAR  F+ +P  
Sbjct: 268 SVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYD 327

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           +++  + +I+    S    +AF LFL L          + +++++A   +  +  GKQ+H
Sbjct: 328 DVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIH 387

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           + A+K+G   ++FV  AL+D Y+KC  ++ +  +F  + +   V WNTI+ G++  G  E
Sbjct: 388 NHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGE 447

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EAL ++ EM+ + +     T+S ++R C   AS+ HA Q H  + +  F  D V  ++L+
Sbjct: 448 EALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLI 507

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D Y+K G I DA  VF  ++ +++ISWNA+I+GY  HG+  +A+ELF++M  + +  N +
Sbjct: 508 DTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDI 567

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           TF+A+LS CS +GL   G  +F SM  DH IKP   HY C++ LLGR G L++A   I  
Sbjct: 568 TFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGD 627

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            P   +  +W ALL++C ++ N+ LG+F+AEK+  +EP+  + YV+L N+Y ++G L + 
Sbjct: 628 IPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLDQV 687

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
           A + +++R  G+R +P  SW+E+K + H F  G   H   + I   ++ + L+ S+ GY+
Sbjct: 688 ALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMRVINAMLEWLNLKTSREGYI 747

Query: 615 PEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLI 673
           P+   +L DVD EQ+ R+L  HSE+LA+A+GL+ T    P++I+++ R C DCH A  +I
Sbjct: 748 PDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPIRILKNLRSCLDCHTAFTVI 807

Query: 674 AMVTGREIVV 683
           + +  REI+V
Sbjct: 808 SKIVKREIIV 817



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 127/507 (25%), Positives = 225/507 (44%), Gaps = 54/507 (10%)

Query: 137 ISACIGLRSIREVKRVFSYMLSTGF--EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +  CI     R  + V  +++  G     DL+  N +L M+ + G +  ARRLFD MPER
Sbjct: 66  LQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPER 125

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           N+VS   ++      GD+  A  LF  L  E  +       TM++ +  ++   +   +H
Sbjct: 126 NMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGVH 185

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           SCA K+G   N FV   LID YS C  + DA+ VF+ +  K  V W  +++ Y+ +   E
Sbjct: 186 SCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPE 245

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
            A  ++ +MR SG K + F  + +++    L S+   K  H   ++     +     AL+
Sbjct: 246 NAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALL 305

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D Y+K G I+DAR  F+ +   +VI  + +I+ Y    + E+A ELF +++ + + PN  
Sbjct: 306 DMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEY 365

Query: 435 TFLAVLSACSRSGLSERGWEIF-------------------------QSMSRDHKI---- 465
           +  +VL AC+     + G +I                            M    KI    
Sbjct: 366 SLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSL 425

Query: 466 -KPRAMHYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWAALLTACRVNGNLELGK 521
                + +  ++    + GL +EA ++   ++ A    T+  ++++L AC    ++   +
Sbjct: 426 RDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASI---R 482

Query: 522 FAAEKLYGMEPEKLSNYVV----LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
            A +    +E    +N  V    L++ Y   G +++A +V + L  + +      SW   
Sbjct: 483 HAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDI-----ISW--- 534

Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRM 604
               +  +SG   H Q  +     DRM
Sbjct: 535 ----NAIISGYALHGQAADALELFDRM 557



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 85/181 (46%), Gaps = 2/181 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY +++ AC    SIR   ++   +  + F  D  + N ++  + +CG + DA ++F  +
Sbjct: 467 TYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHL 526

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            ER+++S N II+G    G   +A  LF  + +   +    TF  ++   +   L++ G 
Sbjct: 527 MERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGL 586

Query: 252 QL-HSCALKMGFGDNVFVSCALIDMYSKCGSIEDA-QGVFDEMSEKTTVGWNTIIAGYAL 309
            L  S  +  G   ++     ++ +  + G + DA Q + D  S  + + W  +++   +
Sbjct: 587 SLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCII 646

Query: 310 H 310
           H
Sbjct: 647 H 647


>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
 gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
          Length = 721

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/584 (35%), Positives = 337/584 (57%), Gaps = 15/584 (2%)

Query: 132 TYDALISACIGLRSIREVKRVFSYM-LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           T+   +SAC  L  ++  + + + +  S G  P + +   +  M+ +CG +  A+ +FD 
Sbjct: 141 TFATALSACSSLGDLQRGREIHARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDR 200

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF-ATMIRASAGLELISV 249
           +P +N+VS N +IA    SG    +    LDL+E+ ++ G R   AT +        ++ 
Sbjct: 201 IPAKNVVSWNALIAAYAQSG---HSHHQALDLFEKMAEHGVRPCRATFVGVLGACNDVTS 257

Query: 250 GKQLHSCALKMGFG---DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
            +++H+  ++ G      +V V  AL++MY+KCGS+E A+ +F +M  +  V  N +IA 
Sbjct: 258 LEKIHARIVETGLQFDVRDVGVQNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIAT 317

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL- 365
           +A  G  +E++ ++ EM   G+  D  TF+ +I  C+   +LE  K+ H  +V    G  
Sbjct: 318 FAQQGLGKESIQVFREMDLEGLPQDDTTFASVITACSCCGALEFGKRIHKRVVEPVLGRK 377

Query: 366 ----DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
               ++V  +ALV  Y K G +E A+ VF  M  KN +SWNA++A   + G+G+EA    
Sbjct: 378 CCLPNVVVETALVSMYGKCGTLEQAKAVFKAMTTKNSVSWNAMLAACAHQGQGDEAAAFL 437

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
                 G+  +  +F++VL ACS SG+ E  ++ FQ M  D  + P A +Y CM++LL R
Sbjct: 438 RAAACEGVELDSASFISVLIACSHSGMLEVAYDHFQLMLSDFDLVPAAENYRCMVDLLAR 497

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
            G L +A  L+   PF      W  LL  CRV G+LE    AAE+ + +EP+  + Y +L
Sbjct: 498 SGRLGDADELMNSMPFSPDAIAWRTLLGGCRVQGSLENAASAAEQAFNLEPQNTAPYTLL 557

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLR-MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRK 600
            ++Y+++GK  E  E+  +++ +GLR ++P  S IEV  + H F++GD SH Q  +I R+
Sbjct: 558 SSLYSATGKKDELVELRSSMKERGLRKLVPGRSVIEVHGRVHEFVAGDSSHPQIDKILRE 617

Query: 601 VDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQS 659
           +D + +E+ + G+VP    ++ D+  E ++ +L+ HSEKLAVAFGLI+T    PL ++++
Sbjct: 618 LDILNVELKQAGFVPSTDGVVHDLKTEDKEEILALHSEKLAVAFGLISTKSGIPLLVLKN 677

Query: 660 HRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            R+C DCH AIKLI+ +  R I VRDA+RFH F+ G CSCGDYW
Sbjct: 678 LRVCSDCHGAIKLISKLRSRVITVRDANRFHRFQSGTCSCGDYW 721



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 120/401 (29%), Positives = 205/401 (51%), Gaps = 23/401 (5%)

Query: 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186
           ++ S ++ A I +C   +    V  +   +   G     Y+ N ++LM  + G + +AR 
Sbjct: 41  EIQSDSFAAAIRSC---KDSNSVSIIHQKITRAGLGSSAYLNNLLVLMLAKHGSLCEARS 97

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           +FD +  +N+ S N+II+     G    A  LF  +    +   + TFAT + A + L  
Sbjct: 98  IFDAIQHKNIFSWNIIISAYAHRGHPSTALHLFAKMDVPPT---AMTFATALSACSSLGD 154

Query: 247 ISVGKQLHS-CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
           +  G+++H+      G   +V +  A+  MY+KCG +  A+ VFD +  K  V WN +IA
Sbjct: 155 LQRGREIHARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAKNVVSWNALIA 214

Query: 306 GYALHGYS-EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
            YA  G+S  +ALDL+ +M + GV+    TF  ++  C  + SLE   + HA +V  G  
Sbjct: 215 AYAQSGHSHHQALDLFEKMAEHGVRPCRATFVGVLGACNDVTSLE---KIHARIVETGLQ 271

Query: 365 LDIV---ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
            D+      +AL++ Y+K G +E AR +F KM  ++ +S N +IA +   G G+E++++F
Sbjct: 272 FDVRDVGVQNALLNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIATFAQQGLGKESIQVF 331

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK----PRAMHYACMIE 477
            +M L G+  +  TF +V++ACS  G  E G  I + +      +    P  +    ++ 
Sbjct: 332 REMDLEGLPQDDTTFASVITACSCCGALEFGKRIHKRVVEPVLGRKCCLPNVVVETALVS 391

Query: 478 LLGREGLLDEAFALIRGAPFKTTKN--MWAALLTACRVNGN 516
           + G+ G L++A A+ +     TTKN   W A+L AC   G 
Sbjct: 392 MYGKCGTLEQAKAVFKAM---TTKNSVSWNAMLAACAHQGQ 429



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 117/270 (43%), Gaps = 48/270 (17%)

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           +F+  IR C    S+      H  + R G G     N+ LV   +K G + +AR +FD +
Sbjct: 46  SFAAAIRSCKDSNSVS---IIHQKITRAGLGSSAYLNNLLVLMLAKHGSLCEARSIFDAI 102

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             KN+ SWN +I+ Y + G    A+ LF +M    + P  +TF   LSACS  G  +RG 
Sbjct: 103 QHKNIFSWNIIISAYAHRGHPSTALHLFAKM---DVPPTAMTFATALSACSSLGDLQRGR 159

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           EI   +     I+P  +    +  +  + G L  A ++    P K   + W AL+ A   
Sbjct: 160 EIHARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAKNVVS-WNALIAAYAQ 218

Query: 514 NGN-----LELGKFAAEKLYGMEP------------------EKLSNYVV---------- 540
           +G+     L+L +  AE  +G+ P                  EK+   +V          
Sbjct: 219 SGHSHHQALDLFEKMAE--HGVRPCRATFVGVLGACNDVTSLEKIHARIVETGLQFDVRD 276

Query: 541 ------LLNIYNSSGKLKEAAEVIRTLRRK 564
                 LLN+Y   G L+ A ++ R ++R+
Sbjct: 277 VGVQNALLNMYAKCGSLEVARDIFRKMQRR 306


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 185/473 (39%), Positives = 293/473 (61%), Gaps = 2/473 (0%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T  +++ A A L  +  GK LHS + ++G  +N+ V+ A++DMY KC  IE AQ VF+ +
Sbjct: 13  TMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEVFNRI 72

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            EK  + W ++++G A  GY +E+L L+ +M+   ++ D  T   ++  C +  +L+  K
Sbjct: 73  REKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGK 132

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
             H  + +     D+V  +ALVD Y+K G I+ A  VF +M  +NV +WNA+I G   HG
Sbjct: 133 YIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHG 192

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
            GE+A+ LF+QM  + + P+ VTF+A+L ACS +GL + G  +FQ+M    +I+PR  HY
Sbjct: 193 HGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHY 252

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532
            C+++LL R   +D+A A I   P K    +WA LL ACR  G+ +L +    ++  +EP
Sbjct: 253 GCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEP 312

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHV 592
           +    YV+L N+Y    +   A ++ + ++ KG+   P CSWIE+    H F++GD+SH+
Sbjct: 313 DSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHL 372

Query: 593 QTKEIYRKVDRMMLEIS-KHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSD 650
           QT++IY  ++ M   ++   G+VP    +L D++E+E +  L  HSEKLA+A GLI+T  
Sbjct: 373 QTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPS 432

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            +P++IV++ R+C DCH+ +K+ + V  REIV RD SRFHHFK+G CSC D+W
Sbjct: 433 GSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 485



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/242 (24%), Positives = 123/242 (50%), Gaps = 9/242 (3%)

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
            ++ D  T   ++  C +L +LE  K  H+     G   ++  N+A++D Y K   IE A
Sbjct: 6   NLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESA 65

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           + VF+++  K+V+SW ++++G    G  +E++ LF +M L+ + P+ +T + VLSAC+++
Sbjct: 66  QEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQT 125

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           G  ++G  I   + +  +I    +    ++++  + G +D A  + R    +     W A
Sbjct: 126 GALDQGKYIHLLIDK-FEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFT-WNA 183

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKL----SNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           ++    ++G+   G+ A      ME +KL      ++ LL   + +G + E   + + ++
Sbjct: 184 MIGGLAMHGH---GEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMK 240

Query: 563 RK 564
            K
Sbjct: 241 NK 242



 Score = 39.7 bits (91), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 95/213 (44%), Gaps = 9/213 (4%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S +  L  +  ++E+L LF  ++     +    T   ++SAC    ++ + K +  ++L 
Sbjct: 82  SMLSGLAKSGYFQESLALFRKMQLHK-IEPDEITLVGVLSACAQTGALDQGKYI--HLLI 138

Query: 159 TGFEP--DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF 216
             FE   DL +   ++ M+ +CG +  A ++F  M  RN+ + N +I G+   G   +A 
Sbjct: 139 DKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGEDAI 198

Query: 217 LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS--CALID 274
            LF  +  +       TF  ++ A +   L+  G  +   A+K  F     +     ++D
Sbjct: 199 SLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQ-AMKNKFQIEPRMEHYGCVVD 257

Query: 275 MYSKCGSIEDAQGVFDEMSEK-TTVGWNTIIAG 306
           +  +   ++DA    + M  K  +V W T++  
Sbjct: 258 LLCRARKVDDALAFIENMPIKANSVLWATLLGA 290


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/543 (35%), Positives = 330/543 (60%), Gaps = 9/543 (1%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           EPD    N +L+ ++R   +  A   F++MP +++ S N +I+G   +G   +AF    D
Sbjct: 133 EPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAF----D 188

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           L+    +    +++ MI        +   ++L+     +G   +V V  A++  Y K G 
Sbjct: 189 LFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYK---NVGM-KSVVVETAMLTGYMKFGK 244

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           +E A+ +F  M+ K  V WN++IAGY  +  +E+ L ++  M +S V+ +  + S ++  
Sbjct: 245 VELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLG 304

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C+ L++L   +Q H  + +     D  A ++L+  Y K G ++ A  +F +M  K+VISW
Sbjct: 305 CSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISW 364

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           NA+I+GY  HG G +A+ LF++M    M+P+ +TF+AV+ AC+ +G  + G + F+SM +
Sbjct: 365 NAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKK 424

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           +  I+ + +HY C+I+LLGR G LDEA +LI+  PFK    ++  LL ACR++ NL+L +
Sbjct: 425 EFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAE 484

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
           FAA  L  ++P   + YV L NIY ++ K  + A+V + ++   +  +P  SWIE+K   
Sbjct: 485 FAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVT 544

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLA 640
           H F S D+ H +   I++K++ +  ++   GYVP+ +  L DV+E+ ++++L +HSEKLA
Sbjct: 545 HEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLA 604

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AFGL+ T+  TP+++ ++ R+C DCH AIK I+ +  REI+VRD +RFHHF++G CSCG
Sbjct: 605 IAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCG 664

Query: 701 DYW 703
           DYW
Sbjct: 665 DYW 667



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 101/205 (49%), Gaps = 20/205 (9%)

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN-HGRGEEAVELFEQM 424
           D+V+ +  +  + +   +E AR+VF+KM  +  ++WN +++GY    G+ +EA ELF+++
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
                 P+ V++  +L    RS   E     F  M     +K  A  +  +I    + G 
Sbjct: 132 ----PEPDSVSYNIMLVCYLRSYGVEAALAFFNKMP----VKDIA-SWNTLISGFAQNGQ 182

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY---GMEPEKLSNYVVL 541
           + +AF L    P K   + W+A+++    +G+LE    AAE+LY   GM+   +     +
Sbjct: 183 MQKAFDLFSVMPEKNGVS-WSAMISGYVEHGDLE----AAEELYKNVGMKSVVVE--TAM 235

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGL 566
           L  Y   GK++ A  + + +  K L
Sbjct: 236 LTGYMKFGKVELAERIFQRMAVKNL 260



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 7/216 (3%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N R  + L++F+ +  E        +  +++  C  L ++   +++   +  
Sbjct: 265 SMIAGYVENCRAEDGLKVFKTM-IESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSK 323

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           +    D      ++ M+ +CG +  A +LF EMP ++++S N +I+G    G   +A  L
Sbjct: 324 SPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHL 383

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG---DNVFVSCALIDM 275
           F  +          TF  +I A      + +G Q    ++K  FG     V  +C +ID+
Sbjct: 384 FDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFK-SMKKEFGIEAKPVHYTC-VIDL 441

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALH 310
             + G +++A  +  EM  K     + T++    +H
Sbjct: 442 LGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIH 477


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/614 (32%), Positives = 363/614 (59%), Gaps = 18/614 (2%)

Query: 105 VLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP 163
            LN +    LE+F E+LE   G      T  A ++AC+    +   K+V  Y +  G E 
Sbjct: 115 TLNSQPALGLEVFVEMLEM--GRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAES 172

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLE-AFLLFLDL 222
              M N +  ++ + G +  A R F  +PE+N+++   +I+   +  + +E    LF+D+
Sbjct: 173 ITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDM 232

Query: 223 WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
             +       T  +++        +++GKQ+ + + K+G   N+ V  + + +Y + G  
Sbjct: 233 LMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGET 292

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYA---------LHGYSE--EALDLYYEMRDSGVKMD 331
           ++A  +F++M + + + WN +I+GYA         L   S   +AL ++ +++ S +K D
Sbjct: 293 DEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPD 352

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
            FTFS I+ +C+ + +LE  +Q HA  ++ GF  D+V NSALV+ Y+K G I+DA   F 
Sbjct: 353 LFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFL 412

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
           +M  +  ++W ++I+GY  HG+ +EA++LFE+M L G+RPN +TF+++LSACS +GL E 
Sbjct: 413 EMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEE 472

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
               F  M +++ I+P   HY CMI++  R G +++AF+ I+   F+  + +W++L+  C
Sbjct: 473 AEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGC 532

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           R +GN+EL  +AA+KL  ++P+ +  Y++LLN+Y S+ + ++ A V + ++++ + +L  
Sbjct: 533 RSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRD 592

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV 631
            SWI +K + + F + D++H Q  E+Y+ ++ ++ +    GY P +   L D ++ E+  
Sbjct: 593 RSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPA 652

Query: 632 ---LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
              L +HSE+LAVA GL+ T     +++ ++  +C DCH++IKL +++  REI+VRD+ R
Sbjct: 653 AGSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKR 712

Query: 689 FHHFKDGMCSCGDY 702
            H FKDG CSCGD+
Sbjct: 713 LHKFKDGRCSCGDF 726



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 188/396 (47%), Gaps = 17/396 (4%)

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
           DARRLFD MPERN+V+   ++ G   +        +F+++ E        T    + A  
Sbjct: 91  DARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACL 150

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
               + +GKQ+H  A+K G      +  +L  +Y+K GS++ A   F  + EK  + W T
Sbjct: 151 ASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTT 210

Query: 303 IIAGYALHGYSEE-ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           +I+  A      E  + L+ +M   GV  + FT + ++ +C     L   KQ  A   + 
Sbjct: 211 MISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKI 270

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN----------- 410
           G   ++   ++ +  Y + G  ++A  +F++M   ++I+WNA+I+GY             
Sbjct: 271 GCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQA 330

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
             RG +A+ +F  +  + M+P+  TF ++LS CS     E+G +I     +   +    +
Sbjct: 331 RSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVV 390

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLY 528
           + A ++ +  + G + +A       P +T    W ++++    +G  +  +  F   +L 
Sbjct: 391 NSA-LVNMYNKCGCIQDANKAFLEMPTRTFVT-WTSMISGYSQHGQPQEAIQLFEEMRLA 448

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           G+ P +++ +V LL+  + +G ++EA      ++++
Sbjct: 449 GVRPNEIT-FVSLLSACSYAGLVEEAEHYFDMMKKE 483


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/630 (34%), Positives = 355/630 (56%), Gaps = 43/630 (6%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS---TGFEPDLYMR 168
           ++++L E  E E    +    Y ALI  C    +I   +R+ S++LS   +  +P  ++ 
Sbjct: 46  KSIQLLESRELE----LDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPP-FLA 100

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N ++ M+ +CG +  AR LF+ MP RN+ +  + +A    +G + EA + F  +++    
Sbjct: 101 NLLIEMYGKCGRLPYARELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGER 160

Query: 229 CGSRTFATMIRASAGLEL--ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
               TF+ ++ A A +    I  G+++H  A   G   NV V  A+I MY KCG ++DA+
Sbjct: 161 PDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDAR 220

Query: 287 GVFDEMSEKTTVGWNTI-------------------------------IAGYALHGYSEE 315
             F+E+  K +V WN +                               IA YA HG  ++
Sbjct: 221 AAFEELQWKNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQ 280

Query: 316 ALDLYYEMRDS-GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           ALDLY  M D+  +     TF  +I +C  L++L+  +  HA +    F  +++ ++ALV
Sbjct: 281 ALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALV 340

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
             Y K G +++A  VF  M  K+ ISWN +I+ Y  HG  ++A+ L+++M L G++P  V
Sbjct: 341 HMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEV 400

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           TF+ +LSACS  GL   G + F  M  DH+IKP   H+ C+I+LLGR G L EA  +++ 
Sbjct: 401 TFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKS 460

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            P +     W +LL AC+ +G+L+ G  AA+++    P     YV+L NIY ++G+ K+ 
Sbjct: 461 MPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDV 520

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
            ++ + +  +G++  P  SWIE+    H F+SGD SH Q +EIY ++ +M+ E+   GYV
Sbjct: 521 EKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYV 580

Query: 615 PEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLI 673
           P+  ++  D++E+E+  L   HSEKLA+ +G +     + L+IV++ R+C DCH A K +
Sbjct: 581 PDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFM 640

Query: 674 AMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + +TGR+IVVRDA+RFH F++G CSC DYW
Sbjct: 641 SRITGRKIVVRDAARFHLFENGSCSCRDYW 670


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 208/565 (36%), Positives = 337/565 (59%), Gaps = 7/565 (1%)

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
           I + + +  Y   +G  P++ +   V+ M+ +CG + DAR  F+E+  +N V+ N ++  
Sbjct: 47  IDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTN 106

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSR--TFATMIRASAGLELISVGKQLHSCALKMG-- 261
               G   EA  LF ++ E          +F+  I A + LE +  G+++H    + G  
Sbjct: 107 YKLDGRDREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKE 166

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEM-SEKTTVGWNTIIAGYALHGYSEEALDLY 320
              +V V  AL++MYSKCG +E+A+ VFD +  +  +V WN +IA YA HG  ++ALDLY
Sbjct: 167 LHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLY 226

Query: 321 YEMRDS-GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379
             M D+  +     TF  +I +C  L++L+  +  HA +    F  +++ ++ALV  Y K
Sbjct: 227 RSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGK 286

Query: 380 WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
            G +++A  VF  M  K+ ISWN +I+ Y  HG  ++A+ L+++M L G++P  VTF+ +
Sbjct: 287 CGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGL 346

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499
           LSACS  GL   G + F  M  DH+IKP   H+ C+I+LLGR G L EA  +++  P + 
Sbjct: 347 LSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQA 406

Query: 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
               W +LL AC+ +G+L+ G  AA+++    P     YV+L NIY ++G+ K+  ++ +
Sbjct: 407 NAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRK 466

Query: 560 TLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKT 619
            +  +G++  P  SWIE+    H F+SGD+SH Q +EIY ++ +M+ E+   GYVP+  +
Sbjct: 467 IMAARGVKKSPGKSWIEIGDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSS 526

Query: 620 LLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTG 678
           +  D++E+E+  L   HSEKLA+ +G +     + L+IV++ R+C DCH A K ++ +TG
Sbjct: 527 VFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITG 586

Query: 679 REIVVRDASRFHHFKDGMCSCGDYW 703
           R+IVVRDA+RFH F++G CSC DYW
Sbjct: 587 RKIVVRDAARFHLFENGSCSCRDYW 611



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 125/269 (46%), Gaps = 13/269 (4%)

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII--RICTRLASLEHAKQAHAGLVRH 361
           +A ++ +G   EAL  +  M  SG + D  TFS+I+        A+++  ++ H      
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARIS 60

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           G   ++V  +A++  Y K GR++DAR  F+++  KN ++WNA++  Y   GR  EA+ELF
Sbjct: 61  GLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELF 120

Query: 422 EQML--LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK-IKPRAMHYACMIEL 478
            +M       RP+  +F   + ACS     E+G EI + + R+ K +    +    ++ +
Sbjct: 121 REMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNM 180

Query: 479 LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME-----PE 533
             + G L+EA  +            W A++ A   +G    GK A +    M        
Sbjct: 181 YSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGR---GKQALDLYRSMHDTTDLAP 237

Query: 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           K   +V ++++      LK+   +   +R
Sbjct: 238 KQGTFVTVIDVCAELSALKQGRAIHARVR 266



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 87/167 (52%), Gaps = 9/167 (5%)

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS--ERGWEIFQSMSRD 462
           +A + ++G   EA+  F +M  +G RP+ VTF  +L+A ++ G +  ++G EI +  +R 
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHR-YARI 59

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN----LE 518
             + P  +    +I + G+ G LD+A A      +K +   W A++T  +++G     LE
Sbjct: 60  SGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVT-WNAMMTNYKLDGRDREALE 118

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
           L +   E+     P+K S + + +   ++   L++  E+   LRR+G
Sbjct: 119 LFREMCERSRSARPDKFS-FSIAIEACSNLEDLEQGREIHEMLRREG 164


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/602 (36%), Positives = 337/602 (55%), Gaps = 41/602 (6%)

Query: 140 CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSC 199
           C   +S      + S ++  GF+    + N +L ++ +CG++  A +LFDEMP R+ VS 
Sbjct: 13  CARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSW 72

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHS 255
             I+         L        L   F+  G +     FA ++RA + L  + +GKQ+H+
Sbjct: 73  ASILTA---HNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
             +   F D+  V  +LIDMY+KCG  +DA+ VFD +  K +V W ++I+GYA  G   E
Sbjct: 130 RFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCE 189

Query: 316 ALDLYY-------------------------------EMRDSGVKM-DHFTFSMIIRICT 343
           A+DL+                                EMR  G+ + D    S ++  C 
Sbjct: 190 AMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCA 249

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            LA LE  KQ H  ++  GF   +  ++ALVD Y+K   I  A+ +F +M  K+VISW +
Sbjct: 250 NLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTS 309

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           +I G   HG+ EEA+ L+++M+L+ ++PN VTF+ +L ACS +GL  RG E+F+SM+ D+
Sbjct: 310 IIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDY 369

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            I P   HY C+++LL R G LDEA  L+   PFK  +  WA+LL+AC  + NLE+G   
Sbjct: 370 SINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRI 429

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
           A+++  ++PE  S Y++L N+Y  +      ++V + +    +R  P  S I+  K   V
Sbjct: 430 ADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQV 489

Query: 584 FLSGDQ-SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAV 641
           F +G+   H    EI   +  +  E+ K GYVP    +L D+++QE ++ L +HSE+LAV
Sbjct: 490 FHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAV 549

Query: 642 AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
           A+GL+     T ++IV++ RIC DCHN +K I+ +  REI+VRDA+R+HHFK+G CSC D
Sbjct: 550 AYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCND 609

Query: 702 YW 703
           +W
Sbjct: 610 FW 611



 Score =  138 bits (348), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 174/376 (46%), Gaps = 58/376 (15%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           R  L +   +    G       +  ++ AC  L  +R  K+V +  + + F  D  +++ 
Sbjct: 86  RRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFFCDDEVVKSS 145

Query: 171 VLLMHVRCGMMIDARRLFDEM-------------------------------PERNLVSC 199
           ++ M+ +CG   DAR +FD +                               P RNL S 
Sbjct: 146 LIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSW 205

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSD-CGSRTFATMIRASAGLELISVGKQLHSCAL 258
             +I+G+I SG  + +F LF ++  E  D       ++++   A L L+ +GKQ+H   +
Sbjct: 206 TALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVI 265

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
            +GF   +F+S AL+DMY+KC  I  A+ +F  M  K  + W +II G A HG +EEAL 
Sbjct: 266 ALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALT 325

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL------DIVAN-- 370
           LY EM  S +K +  TF  ++  C+           HAGLV  G  L      D   N  
Sbjct: 326 LYDEMVLSRIKPNEVTFVGLLYACS-----------HAGLVSRGRELFRSMTTDYSINPS 374

Query: 371 ----SALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQML 425
               + L+D  S+ G +++A ++ DK+  K +  +W +L++    H   E  V + +++L
Sbjct: 375 LQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVL 434

Query: 426 LNGMRPNHVTFLAVLS 441
              ++P   +   +LS
Sbjct: 435 --DLKPEDPSTYILLS 448


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/649 (33%), Positives = 346/649 (53%), Gaps = 33/649 (5%)

Query: 88  TQMKKPSAGICSQIEKLVLNKRYRE-ALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           +Q+  P     +Q+ + +    + E  + L+  L     F +   ++ +L+ A   + + 
Sbjct: 78  SQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAF 137

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
                +       GF  D +++  ++ M+  C  ++DAR LFD+M   + V+ NMII G 
Sbjct: 138 NHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGY 197

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
             +G Y +A  LF D+        S    T++ A      +S G+ +H      G+  + 
Sbjct: 198 CQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDS 257

Query: 267 FVSCALIDMYSKCGS-------------------------------IEDAQGVFDEMSEK 295
            +  ALI+MY+ CG+                               ++DA+ +FD+M E+
Sbjct: 258 HLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIER 317

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
             V W+ +I+GYA     +EAL L+ EM       D  T   +I  C+ + +L  A   H
Sbjct: 318 DLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIH 377

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
             + R GFG  +  N+AL+D Y+K G +  AR VF+ M  KNVISW+++I  +  HG  +
Sbjct: 378 TYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNAD 437

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
            A++LF +M    + PN VTF+ VL AC  +GL E G ++F SM  +H I P   HY CM
Sbjct: 438 SAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCM 497

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535
           ++L  R   L +A  LI   PF     +W +L++AC+V+G  ELG+FAA++L  +EP+  
Sbjct: 498 VDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHD 557

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTK 595
              VVL NIY    +  +   + +++  KG+    A S IE+  Q H+F+  D+ H Q+ 
Sbjct: 558 GALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSD 617

Query: 596 EIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLS-YHSEKLAVAFGLINTSDWTPL 654
           EIY K+D ++ ++   GY P    +L D++E++++ L  +HSEKLAV +GLI+  + + +
Sbjct: 618 EIYEKLDEVVSKLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCI 677

Query: 655 QIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +IV++ RIC DCH+ +KL++ V   EIVVRD +RFHH   G+CSC DYW
Sbjct: 678 RIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726


>gi|356544972|ref|XP_003540920.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Glycine max]
          Length = 622

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/581 (34%), Positives = 337/581 (58%), Gaps = 17/581 (2%)

Query: 124 GGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183
           G F++  + Y+ L+  C  L  ++E K V  +M ++ F+ DL ++N VL M+ RCG + D
Sbjct: 58  GSFELDLTLYNTLLKRCTQLGKLKEGKLVHFHMFNSKFKDDLVIQNFVLFMYARCGNLKD 117

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
            + +F+E  ++++V+   +I+G   +    +  +LF  +  E +       +++I AS  
Sbjct: 118 TQHVFNEKLQKDMVTWTSMISGYAQNERAKDTLVLFPRILSEGTKLNXFILSSLIHASCW 177

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           +                G   NVFV  +L++M ++CG + +   VFD    K  V WN +
Sbjct: 178 M---------------YGCHSNVFVGSSLVNMXARCGYLGEEXLVFDNSWCKNEVSWNAL 222

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I GYA  G  EEAL LY  M+    K   FT+S I+     +  LE  K   A L++ G 
Sbjct: 223 IGGYAKKGEGEEALALYLRMQMEAYKPIQFTYSGILSSYLSMGCLEQGKWLLAHLMKPGQ 282

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
            L +   + L+  Y+K G+I D    FDK++  +V+S N+++  Y  HG G+EA++ FE+
Sbjct: 283 KLVVYVGNTLLHMYAKLGKIRDVEKFFDKLVKVDVVSCNSMLTRYAQHGLGKEAMQQFEE 342

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           M+  G+ PN +T L VLS+CS + L + G   F  M R + I+P+  HYA +I+LLG  G
Sbjct: 343 MISFGIEPNDITVLFVLSSCSHARLLDEGKHYFGLM-RKYSIEPKVSHYATIIDLLGXAG 401

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
           LLD+A + I   P +    +  ALL   +++ N ++G +AA++++ + P     + +L+N
Sbjct: 402 LLDQAESFIEEMPIEPIVAIXGALLGDSKMHKNTKMGAYAAQQVFELNPSCRGTHTLLVN 461

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           +Y S+G+  + A+VI+ ++  G++  P CS +E++   HVF++ D +H Q ++I++  ++
Sbjct: 462 MYASAGRWGDVAKVIKIMKDSGVKKEPTCSXVEIENSVHVFVANDAAHPQKEKIHKMWEK 521

Query: 604 MMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           +  +I + GYVP+   +L  VD+QE+ +   YH+EKLA+    +NT   +  +I+++ R+
Sbjct: 522 LNQKIKEIGYVPDTSHVLLFVDQQEKELNFQYHTEKLALTLAFLNTPPRSTTRIMKNIRV 581

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             DCH++I  +A+V  REI+VRD +RFHHF+DG CSCGDYW
Sbjct: 582 SGDCHSSINYVALVVKREIIVRDTNRFHHFRDGFCSCGDYW 622


>gi|356537359|ref|XP_003537195.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g13770, mitochondrial-like
           [Glycine max]
          Length = 600

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/581 (34%), Positives = 334/581 (57%), Gaps = 4/581 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G D+    Y+ +++ C+  R+ +E +RV ++ + T + P +Y+  R+++ + +C  + DA
Sbjct: 21  GLDMNLQDYNTVLNECVSKRAFKEGQRVHAHTIKTHYLPCVYLWTRLIVFYTKCDSLGDA 80

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R + +EMPERN+VS   +I+     G   +A  + + +    ++    TFATM       
Sbjct: 81  RHVLNEMPERNVVSWTAMISAYSQRGYASQALSILVQILRSGTESNEFTFATMPYFMYRF 140

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
               + + +HS  +K+ F  +V+V  +L+DMY+K G I +A+G+F+ + E+  V    II
Sbjct: 141 LGFCLREAIHSLIIKLNFKAHVYVGSSLLDMYAKDGKIHEARGIFECLPERDVVSCTAII 200

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           +GYA     EE L+L+  ++  G+  ++ T++ ++   + LA+L+H KQ H  L+     
Sbjct: 201 SGYAQLDLDEE-LELFLRLQREGMXSNYVTYTSVLTALSGLAALDHGKQVHNHLLCSEVP 259

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
             ++  ++L+D YSK G +  AR +FD M  + VISWNA++ GY  HG   E +ELF  M
Sbjct: 260 SFVILQNSLIDMYSKCGNLTYARRIFDTMRERTVISWNAMLVGYSKHGERREVLELFNLM 319

Query: 425 L-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH-KIKPRAMHYACMIELLGRE 482
              N ++P+ VT LAVLS CS  G  ++G +IF  M+     ++P    Y C+++LLGR 
Sbjct: 320 RDENKVKPDSVTVLAVLSGCSHGGQEDKGMDIFYDMTSGKISVQPDTKRYGCVVDLLGRA 379

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
           G ++EAF  I+  PF+ +  +   LL AC V+ NL +G+F   +L   EPE   NYV+L 
Sbjct: 380 GRVEEAFEFIKKIPFEPSAAICGCLLGACSVHSNLGIGEFVGHRLLEFEPENAGNYVILS 439

Query: 543 NIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVD 602
           N+Y S+G+ ++   +   + +K +   P  S IEV +    F   D SH + +E+  K  
Sbjct: 440 NLYASAGRWEDVTSLRNLMLKKAVTKEPGRSLIEVDQVLQTFHPSDCSHPRREEVSAKXQ 499

Query: 603 RMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHR 661
            +++   + GY P+   +L DVD EQ++++L  HSEKLA++FGLI T +   + ++++ R
Sbjct: 500 ELLVRFKEAGYFPDLSCVLHDVDEEQKEKILLSHSEKLALSFGLIATPESVLICVIKNLR 559

Query: 662 ICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           IC DCHN  K I+ +  RE+ +RD + FH      CSCGDY
Sbjct: 560 ICVDCHNFAKYISKIYSREVSLRDKNWFHGIVGEKCSCGDY 600



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/244 (21%), Positives = 106/244 (43%), Gaps = 19/244 (7%)

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           + H +     +   +M   G+ M+   ++ ++  C    + +  ++ HA  ++  +   +
Sbjct: 2   STHSHDTHLREALIQMTLXGLDMNLQDYNTVLNECVSKRAFKEGQRVHAHTIKTHYLPCV 61

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              + L+ FY+K   + DARHV ++M  +NV+SW A+I+ Y   G   +A+ +  Q+L +
Sbjct: 62  YLWTRLIVFYTKCDSLGDARHVLNEMPERNVVSWTAMISAYSQRGYASQALSILVQILRS 121

Query: 428 GMRPNHVTFLAV-------LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
           G   N  TF  +       L  C R        E   S+      K      + ++++  
Sbjct: 122 GTESNEFTFATMPYFMYRFLGFCLR--------EAIHSLIIKLNFKAHVYVGSSLLDMYA 173

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540
           ++G + EA  +    P +   +  A +    +++ + EL  F   +  GM     SNYV 
Sbjct: 174 KDGKIHEARGIFECLPERDVVSCTAIISGYAQLDLDEELELFLRLQREGMX----SNYVT 229

Query: 541 LLNI 544
             ++
Sbjct: 230 YTSV 233


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/614 (32%), Positives = 364/614 (59%), Gaps = 18/614 (2%)

Query: 105 VLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP 163
            LN +    LE+F E+LE   G      T  A ++AC+    +   K+V  Y +  G E 
Sbjct: 155 TLNSQPALGLEVFVEMLEM--GRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAES 212

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL-LFLDL 222
              M N +  ++ + G +  A R F  +PE+N+++   +I+   +  + +E  L LF+D+
Sbjct: 213 ITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDM 272

Query: 223 WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
             +       T  +++        +++GKQ+ + + K+G   N+ V  + + +Y + G  
Sbjct: 273 LMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGET 332

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYA---------LHGYSE--EALDLYYEMRDSGVKMD 331
           ++A  +F++M + + + WN +I+GYA         L   S   +AL ++ +++ S +K D
Sbjct: 333 DEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPD 392

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
            FTFS I+ +C+ + +LE  +Q HA  ++ GF  D+V NSALV+ Y+K G I+DA   F 
Sbjct: 393 LFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFL 452

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
           +M  +  ++W ++I+GY  HG+ +EA++LFE+M L G+RPN +TF+++LSACS +GL E 
Sbjct: 453 EMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEE 512

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
               F  M +++ I+P   HY CMI++  R G +++AF+ I+   F+  + +W++L+  C
Sbjct: 513 AEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGC 572

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           R +GN+EL  +AA+KL  ++P+ +  Y++LLN+Y S+ + ++ A V + ++++ + +L  
Sbjct: 573 RSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRD 632

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV 631
            SWI +K + + F + D++H Q  E+Y+ ++ ++ +    GY P +   L D ++ E+  
Sbjct: 633 RSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPA 692

Query: 632 ---LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
              L +HSE+LAVA GL+ T     +++ ++  +C DCH++IKL +++  REI+VRD+ R
Sbjct: 693 AGSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKR 752

Query: 689 FHHFKDGMCSCGDY 702
            H FKDG CSCGD+
Sbjct: 753 LHKFKDGRCSCGDF 766



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/454 (24%), Positives = 217/454 (47%), Gaps = 17/454 (3%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G  V S+ Y  L+  C+ + S+   + V  +M  TG   D+++   ++  ++RCG   DA
Sbjct: 73  GKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDA 132

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           RRLFD MPERN+V+   ++ G   +        +F+++ E        T    + A    
Sbjct: 133 RRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLAS 192

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             + +GKQ+H  A+K G      +  +L  +Y+K GS++ A   F  + EK  + W T+I
Sbjct: 193 CDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMI 252

Query: 305 AGYALHGYSEE-ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           +  A      E  L L+ +M   GV  + FT + ++ +C     L   KQ  A   + G 
Sbjct: 253 SACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGC 312

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN-----------HG 412
             ++   ++ +  Y + G  ++A  +F++M   ++I+WNA+I+GY               
Sbjct: 313 ETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARS 372

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
           RG +A+ +F  +  + M+P+  TF ++LS CS     E+G +I     +   +    ++ 
Sbjct: 373 RGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNS 432

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGM 530
           A ++ +  + G + +A       P +T    W ++++    +G  +  +  F   +L G+
Sbjct: 433 A-LVNMYNKCGCIQDANKAFLEMPTRTFVT-WTSMISGYSQHGQPQEAIQLFEEMRLAGV 490

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
            P +++ +V LL+  + +G ++EA      ++++
Sbjct: 491 RPNEIT-FVSLLSACSYAGLVEEAEHYFDMMKKE 523



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 13/244 (5%)

Query: 210 GDYLEAFLLFLDLWE------EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
           G  +EA L  LD+ E      E     S  +  ++     +  +   + +H    K G G
Sbjct: 51  GGGMEAPLRTLDVQEAMTMLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAG 110

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
            ++FV+ +L++ Y +CG+  DA+ +FD M E+  V W  ++ GY L+      L+++ EM
Sbjct: 111 ADMFVATSLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEM 170

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
            + G    H+T    +  C     ++  KQ H   +++G        ++L   Y+K G +
Sbjct: 171 LEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSL 230

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVE----LFEQMLLNGMRPNHVTFLAV 439
           + A   F ++  KNVI+W  +I+        EE VE    LF  ML++G+ PN  T  +V
Sbjct: 231 DSALRAFWRIPEKNVITWTTMISACAED---EECVELGLSLFIDMLMDGVMPNEFTLTSV 287

Query: 440 LSAC 443
           +S C
Sbjct: 288 MSLC 291



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 10/193 (5%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M   G  +    +  ++  C  + SL  A+  H  + + G G D+   ++LV+ Y + G 
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGA 128

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
             DAR +FD M  +NV++W AL+ GY  + +    +E+F +ML  G  P+H T  A L+A
Sbjct: 129 ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA 188

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM----IELLGREGLLDEAFALIRGAPFK 498
           C  S   + G ++       + IK  A     M      L  + G LD A       P K
Sbjct: 189 CLASCDVDLGKQV-----HGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEK 243

Query: 499 TTKNMWAALLTAC 511
                W  +++AC
Sbjct: 244 NVIT-WTTMISAC 255


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/574 (35%), Positives = 334/574 (58%), Gaps = 8/574 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           ++ A+++ C     + + +R+F  M       D    N ++  +++ G + DA +LF +M
Sbjct: 130 SWTAMVNGCFRSGKVDQAERLFYQMPV----KDTAAWNSMVHGYLQFGKVDDALKLFKQM 185

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P +N++S   +I G+  +    EA  LF ++        SR F  +I A A      +G 
Sbjct: 186 PGKNVISWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRPFTCVITACANAPAFHMGI 245

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           Q+H   +K+GF    +VS +LI  Y+ C  I D++ VFDE   +    W  +++GY+L+ 
Sbjct: 246 QVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNK 305

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             E+AL ++  M  + +  +  TF+  +  C+ L +L+  K+ H   V+ G   D    +
Sbjct: 306 KHEDALSIFSGMLRNSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGN 365

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           +LV  YS  G + DA  VF K+  K+++SWN++I G   HGRG+ A  +F QM+     P
Sbjct: 366 SLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEP 425

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRD-HKIKPRAMHYACMIELLGREGLLDEAFA 490
           + +TF  +LSACS  G  E+G ++F  MS   + I  +  HY CM+++LGR G L EA  
Sbjct: 426 DEITFTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEE 485

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
           LI     K  + +W ALL+ACR++ +++ G+ AA  ++ ++ +  + YV+L NIY S+G+
Sbjct: 486 LIERMVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGR 545

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
               +++   +++ G+   P  SW+ ++ + H F SGDQ H     IY K++ +  ++ +
Sbjct: 546 WSNVSKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQPHCS--RIYEKLEFLREKLKE 603

Query: 611 HGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
            GY P+ ++ L DV DEQ++ +L YHSE+LA+AFGLINT + + + ++++ R+C DCH  
Sbjct: 604 LGYAPDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTV 663

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           IKLI+ V GREIV+RD  RFHHFK+G CSCGDYW
Sbjct: 664 IKLISGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 122/474 (25%), Positives = 216/474 (45%), Gaps = 61/474 (12%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           R I E + VF+ + S    P + +  +++  + R   ++DA  LFDEMP R++VS N +I
Sbjct: 49  RRIDEAREVFNQVPS----PHVSLYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMI 104

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
           +G ++ GD   A  LF    +E  +    ++  M+        +   ++L     +M   
Sbjct: 105 SGCVECGDMNTAVKLF----DEMPERSVVSWTAMVNGCFRSGKVDQAERLF---YQMPVK 157

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
           D    + +++  Y + G ++DA  +F +M  K  + W T+I G   +  S EALDL+  M
Sbjct: 158 DTAAWN-SMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNM 216

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
               +K     F+ +I  C    +     Q H  +++ GF  +   +++L+ FY+   RI
Sbjct: 217 LRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRI 276

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
            D+R VFD+ + + V  W AL++GY  + + E+A+ +F  ML N + PN  TF + L++C
Sbjct: 277 GDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQSTFASGLNSC 336

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA------------- 490
           S  G  + G E+   ++    ++  A     ++ +    G +++A +             
Sbjct: 337 SALGTLDWGKEM-HGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSW 395

Query: 491 -----------------LIRGAPFKTTKN----MWAALLTACRVNGNLELGKFAAEKLYG 529
                            +I G   +  K      +  LL+AC   G LE G+   +  Y 
Sbjct: 396 NSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCGFLEKGR---KLFYY 452

Query: 530 MEP------EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG-----LRMLPAC 572
           M         K+ +Y  +++I    GKLKEA E+I  +  K      L +L AC
Sbjct: 453 MSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSAC 506



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/317 (25%), Positives = 156/317 (49%), Gaps = 7/317 (2%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N+R  EAL+LF+ +         S  +  +I+AC    +     +V   ++  GF  + Y
Sbjct: 203 NERSGEALDLFKNM-LRCCIKSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEY 261

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   ++  +  C  + D+R++FDE     +     +++G   +  + +A  +F  +    
Sbjct: 262 VSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNS 321

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 TFA+ + + + L  +  GK++H  A+K+G   + FV  +L+ MYS  G++ DA 
Sbjct: 322 ILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAV 381

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VF ++ +K+ V WN+II G A HG  + A  ++ +M     + D  TF+ ++  C+   
Sbjct: 382 SVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEITFTGLLSACSHCG 441

Query: 347 SLEHAKQAHAGLVRHGFGLD--IVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNA 403
            LE  ++    +      +D  I   + +VD   + G++++A  + ++M+ K N + W A
Sbjct: 442 FLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLA 501

Query: 404 LIAGYGNHG---RGEEA 417
           L++    H    RGE+A
Sbjct: 502 LLSACRMHSDVDRGEKA 518


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/599 (36%), Positives = 328/599 (54%), Gaps = 49/599 (8%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           REA+ L+ +     G      T+  ++S C  + +  E  +V   ++  G E D++++N 
Sbjct: 113 REAILLY-VRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNC 171

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++  +  CG M    ++F+ M ERN+VS   +I G        EA  LF ++        
Sbjct: 172 LIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEML------- 224

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
                                            + V V+ AL+DMY KCG+I+ A+ +FD
Sbjct: 225 ---------------------------------NKVMVN-ALVDMYMKCGAIDAAKRLFD 250

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           E  ++  V +NTI++ YA  G + EAL +  EM   G + D  T    I    +L  L +
Sbjct: 251 ECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFY 310

Query: 351 AKQAHAGLV-----RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
            K  H   V     ++G   D+  N+ALVD +++ G  + A  VF+KM  ++V +W A I
Sbjct: 311 GKVCHGYWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAI 370

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
                 G GE A  LF QML+ G++P+ V F+ VL+ACS  G  E+G  IF S+  DH I
Sbjct: 371 GTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIF-SLMEDHGI 429

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
            P+  HY CM++LLGR GLL EAF LI+  P +    +W +LL ACRV+ N+E+  +AAE
Sbjct: 430 SPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAE 489

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFL 585
           ++  + P++   +V+L NIY S+GK  + A V   LR KG+R +P  S ++V    H F 
Sbjct: 490 RINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFT 549

Query: 586 SGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFG 644
           SGD+SH +   I   +  M    S  G++P+   +L DVDEQE+  +LS HSEKLA+AFG
Sbjct: 550 SGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFG 609

Query: 645 LINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           LI T    P+++V++ R+C DCH+  K+ +++  REI+VRD +RFH F+ G+CSC DYW
Sbjct: 610 LIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 668



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 116/250 (46%), Gaps = 19/250 (7%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED---AQGVF-----DEMSEKTTVGWNT 302
           KQLH    K G          L++  ++  S E    A+  F     D  S+      N+
Sbjct: 42  KQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNS 101

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I GY+  G   EA+ LY  M   GV  +H+TF  ++  CT++A+     Q H  +V+ G
Sbjct: 102 LIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMG 161

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
              D+   + L+ FY++ G ++    VF+ M  +NV+SW +LI GY    R +EAV LF 
Sbjct: 162 LEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFF 221

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           +ML      N V   A++    + G  +    +F     D  +    + Y  ++    R+
Sbjct: 222 EML------NKVMVNALVDMYMKCGAIDAAKRLF-----DECVDRNLVLYNTILSNYARQ 270

Query: 483 GLLDEAFALI 492
           GL  EA A++
Sbjct: 271 GLAREALAIL 280


>gi|302776458|ref|XP_002971391.1| hypothetical protein SELMODRAFT_95540 [Selaginella moellendorffii]
 gi|300160523|gb|EFJ27140.1| hypothetical protein SELMODRAFT_95540 [Selaginella moellendorffii]
          Length = 598

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/586 (36%), Positives = 344/586 (58%), Gaps = 18/586 (3%)

Query: 126 FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
           F   +  Y AL+  C   R++ + KRV  ++   G+E + ++ N ++ M+ +C  + DA 
Sbjct: 23  FCSNTEAYAALLRRCANERNLVDGKRVHEHLRRYGYENETFLGNLLVQMYGKCSSIDDAA 82

Query: 186 RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGL 244
             FD + +++L S N++IA   ++G    A  +F +L E      +R TF  ++  +AGL
Sbjct: 83  LAFDSIRKKDLFSWNIMIAAFAENGCLDRAVGVF-ELMEPARIKRNRGTFVAVL--AAGL 139

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
           +L   GK++H      G   N  V+ AL+ MY  CGS +DA+ VF+++ +   V WN +I
Sbjct: 140 DL-EQGKKIHDSVHSSGLERNEMVATALLSMYGACGSTDDARQVFEQVPKLDLVCWNAMI 198

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR------ICTRLASLEHAKQAHAGL 358
             Y  +    EAL++++ +   GVK +  T+   +       + +   SL H + + AGL
Sbjct: 199 TAYVQNDRGREALEIFHRLEMEGVKCNEVTYLAALDACACLAVQSEGRSL-HKRVSEAGL 257

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
           +   F    VANS L++ Y K G +E A  +F+ M  +++ SWN L+  YG++G G+ AV
Sbjct: 258 LLTSFK---VANS-LINMYGKSGNLEAAEEIFESMPSRDISSWNVLLTVYGHNGLGDLAV 313

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478
           + F +  L G  P+ +TFLAVL ACS +GL + G E+  S+  D  I P   HY C+++L
Sbjct: 314 DRFTESCLEGFEPDSITFLAVLQACSHAGLLDTGVELLVSIQEDWGIDPTQYHYLCVVDL 373

Query: 479 LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538
           LGR G L  A ALI   PF+  +  W +LL  CRVN ++  G+ A ++L  M  E  S Y
Sbjct: 374 LGRSGELVRAEALINSMPFEPEEGAWRSLLGGCRVNSDVGRGERATQRLLVM-SEDSSPY 432

Query: 539 VVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIY 598
           V++ NIY S      A  +   +  + ++  P  SWIEV+ + H F + D+ H + +EIY
Sbjct: 433 VLMANIYASIRNFDLAERLRSVMADRNVKKQPGLSWIEVRGRIHTFAANDKLHARKEEIY 492

Query: 599 RKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIV 657
             +DR+ +E+ + GY P+ +  L DV+E+++ R+L +HSEKLA+ FGL++T D +PL ++
Sbjct: 493 AGLDRLFVELQREGYRPDTRVALYDVEEEKKVRMLLHHSEKLAIMFGLMSTPDGSPLFVL 552

Query: 658 QSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++ R+C DCH A K+IA +T R+IV+RDASRFHHF++G CSC DYW
Sbjct: 553 KNLRVCADCHAATKIIAKITKRKIVMRDASRFHHFENGKCSCCDYW 598



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 172/344 (50%), Gaps = 7/344 (2%)

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           DL +E     +  +A ++R  A    +  GK++H    + G+ +  F+   L+ MY KC 
Sbjct: 17  DLGQERFCSNTEAYAALLRRCANERNLVDGKRVHEHLRRYGYENETFLGNLLVQMYGKCS 76

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           SI+DA   FD + +K    WN +IA +A +G  + A+ ++  M  + +K +  TF   + 
Sbjct: 77  SIDDAALAFDSIRKKDLFSWNIMIAAFAENGCLDRAVGVFELMEPARIKRNRGTF---VA 133

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
           +      LE  K+ H  +   G   + +  +AL+  Y   G  +DAR VF+++   +++ 
Sbjct: 134 VLAAGLDLEQGKKIHDSVHSSGLERNEMVATALLSMYGACGSTDDARQVFEQVPKLDLVC 193

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           WNA+I  Y  + RG EA+E+F ++ + G++ N VT+LA L AC+   +   G  + + +S
Sbjct: 194 WNAMITAYVQNDRGREALEIFHRLEMEGVKCNEVTYLAALDACACLAVQSEGRSLHKRVS 253

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN--GNLE 518
               +         +I + G+ G L+ A  +    P +   + W  LLT    N  G+L 
Sbjct: 254 EAGLLLTSFKVANSLINMYGKSGNLEAAEEIFESMPSRDISS-WNVLLTVYGHNGLGDLA 312

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           + +F    L G EP+ ++ ++ +L   + +G L    E++ +++
Sbjct: 313 VDRFTESCLEGFEPDSIT-FLAVLQACSHAGLLDTGVELLVSIQ 355



 Score = 43.9 bits (102), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 52/211 (24%), Positives = 92/211 (43%), Gaps = 4/211 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I   V N R REALE+F  LE E G      TY A + AC  L    E + +   +  
Sbjct: 196 AMITAYVQNDRGREALEIFHRLEME-GVKCNEVTYLAALDACACLAVQSEGRSLHKRVSE 254

Query: 159 TG-FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
            G       + N ++ M+ + G +  A  +F+ MP R++ S N+++     +G    A  
Sbjct: 255 AGLLLTSFKVANSLINMYGKSGNLEAAEEIFESMPSRDISSWNVLLTVYGHNGLGDLAVD 314

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH-SCALKMGFGDNVFVSCALIDMY 276
            F +   E  +  S TF  +++A +   L+  G +L  S     G     +    ++D+ 
Sbjct: 315 RFTESCLEGFEPDSITFLAVLQACSHAGLLDTGVELLVSIQEDWGIDPTQYHYLCVVDLL 374

Query: 277 SKCGSIEDAQGVFDEMS-EKTTVGWNTIIAG 306
            + G +  A+ + + M  E     W +++ G
Sbjct: 375 GRSGELVRAEALINSMPFEPEEGAWRSLLGG 405


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/614 (32%), Positives = 363/614 (59%), Gaps = 18/614 (2%)

Query: 105 VLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP 163
            LN +    LE+F E+LE   G      T  A ++AC+    +   K+V  Y +  G E 
Sbjct: 155 TLNSQPALGLEVFVEMLEM--GRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAES 212

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLE-AFLLFLDL 222
              M N +  ++ + G +  A R F  +PE+N+++   +I+   +  + +E    LF+D+
Sbjct: 213 ITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDM 272

Query: 223 WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
             +       T  +++        +++GKQ+ + + K+G   N+ V  + + +Y + G  
Sbjct: 273 LMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGET 332

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYA---------LHGYSE--EALDLYYEMRDSGVKMD 331
           ++A  +F++M + + + WN +I+GYA         L   S   +AL ++ +++ S +K D
Sbjct: 333 DEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPD 392

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
            FTFS I+ +C+ + +LE  +Q HA  ++ GF  D+V NSALV+ Y+K G I+DA   F 
Sbjct: 393 LFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFL 452

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
           +M  +  ++W ++I+GY  HG+ +EA++LFE+M L G+RPN +TF+++LSACS +GL E 
Sbjct: 453 EMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEE 512

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
               F  M +++ I+P   HY CMI++  R G +++AF+ I+   F+  + +W++L+  C
Sbjct: 513 AEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGC 572

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           R +GN+EL  +AA+KL  ++P+ +  Y++LLN+Y S+ + ++ A V + ++++ + +L  
Sbjct: 573 RSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRD 632

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV 631
            SWI +K + + F + D++H Q  E+Y+ ++ ++ +    GY P +   L D ++ E+  
Sbjct: 633 RSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPA 692

Query: 632 ---LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
              L +HSE+LAVA GL+ T     +++ ++  +C DCH++IKL +++  REI+VRD+ R
Sbjct: 693 AGSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKR 752

Query: 689 FHHFKDGMCSCGDY 702
            H FKDG CSCGD+
Sbjct: 753 LHKFKDGRCSCGDF 766



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/454 (24%), Positives = 215/454 (47%), Gaps = 17/454 (3%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G  V S+ Y  L+  C+   S+   + V  +M  TG   D+++   ++  ++RC    DA
Sbjct: 73  GKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDA 132

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           RRLFD MPERN+V+   ++ G   +        +F+++ E        T    + A    
Sbjct: 133 RRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLAS 192

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             + +GKQ+H  A+K G      +  +L  +Y+K GS++ A   F  + EK  + W T+I
Sbjct: 193 CDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMI 252

Query: 305 AGYALHGYSEE-ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           +  A      E  + L+ +M   GV  + FT + ++ +C     L   KQ  A   + G 
Sbjct: 253 SACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGC 312

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN-----------HG 412
             ++   ++ +  Y + G  ++A  +F++M   ++I+WNA+I+GY               
Sbjct: 313 ETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARS 372

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
           RG +A+ +F  +  + M+P+  TF ++LS CS     E+G +I     +   +    ++ 
Sbjct: 373 RGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNS 432

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGM 530
           A ++ +  + G + +A       P +T    W ++++    +G  +  +  F   +L G+
Sbjct: 433 A-LVNMYNKCGCIQDANKAFLEMPTRTFVT-WTSMISGYSQHGQPQEAIQLFEEMRLAGV 490

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
            P +++ +V LL+  + +G ++EA      ++++
Sbjct: 491 RPNEIT-FVSLLSACSYAGLVEEAEHYFDMMKKE 523



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 85/193 (44%), Gaps = 10/193 (5%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M   G  +    +  ++  C    SL  A+  H  + + G   D+   ++LV+ Y +   
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSA 128

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
             DAR +FD M  +NV++W AL+ GY  + +    +E+F +ML  G  P+H T  A L+A
Sbjct: 129 ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA 188

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM----IELLGREGLLDEAFALIRGAPFK 498
           C  S   + G ++       + IK  A     M      L  + G LD A       P K
Sbjct: 189 CLASCDVDLGKQV-----HGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEK 243

Query: 499 TTKNMWAALLTAC 511
                W  +++AC
Sbjct: 244 NVIT-WTTMISAC 255


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/474 (40%), Positives = 292/474 (61%), Gaps = 3/474 (0%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG--SIEDAQGVFD 290
           TF  +++  AG+  + +GK +H C +K GF ++V V   LI MY   G    E A+ VFD
Sbjct: 127 TFPFVLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFD 186

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           +  +  TV W+ +IAG+   G S  A+DL+ EM+  GV  D  T   ++  C  L +LE 
Sbjct: 187 DSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALEL 246

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            K   + + +      +   +AL+D ++K G ++ A  +F +M  + ++SW ++IAG   
Sbjct: 247 GKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAM 306

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           HGRG +AV LF++M+ NG+ P+ V F+ VLSACS SGL ++G   F SM R+  I P+  
Sbjct: 307 HGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVE 366

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HY CM++LL R G + EAF  ++  PF+  + +W  ++TAC   G L+LG+  +++L   
Sbjct: 367 HYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKS 426

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           EP   SNYV+L NIY    + ++  +V   +  +G++ +P  + IEV  + + F++GD+S
Sbjct: 427 EPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKS 486

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTS 649
           H Q KEIY  VD M  EI K GYVP    +L D+DE+++   L  HSEKLA+AF L+NT 
Sbjct: 487 HDQYKEIYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTP 546

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             T ++IV++ R+C DCH+A K I+ V  REIVVRD +RFHHFK+G+CSC D+W
Sbjct: 547 PGTSIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 82/188 (43%), Gaps = 4/188 (2%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T  +++SAC  L ++   K V SY+        + + N ++ M  +CG +  A +LF +M
Sbjct: 230 TMVSVLSACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQM 289

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
             R +VS   +IAG+   G  L+A  LF ++ E         F  ++ A +   L+  G+
Sbjct: 290 DSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGR 349

Query: 252 -QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYAL 309
               S          V     ++D+  + G +++A     +M  E   + W TII   A 
Sbjct: 350 YYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIIT--AC 407

Query: 310 HGYSEEAL 317
           H   E  L
Sbjct: 408 HATGELKL 415


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 205/562 (36%), Positives = 319/562 (56%), Gaps = 4/562 (0%)

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
           + E +R+ S +   GF      +N ++ M+ +CG + +AR +F+ + ER +VS + +I  
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 206 MIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMG--F 262
               G   EA LLF  +  +   +  + TF  +  A   +E +  G+++H+ A+  G   
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELK 120

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             N  +  AL++MY +CGS+E+A+ VFD M       W ++I     +    EAL+L++ 
Sbjct: 121 SSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHR 180

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M   G+     T + ++  C    +L+  KQ H+ L   GF   ++A +AL+D Y+K G 
Sbjct: 181 MNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGS 240

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           +E +  VF  M  +N +SW A+IA    HG+G+EA+ELF++M L GM  +  TF+ VL A
Sbjct: 241 LECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRA 300

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
           CS +GL +   E F SM  D+ I P   HY   ++ +GR G L +A  LI   PF     
Sbjct: 301 CSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETL 360

Query: 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
            W  LL ACR++   E     AE L  + PE    Y +L N+Y ++G+  +   V + + 
Sbjct: 361 TWKTLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMT 420

Query: 563 RKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLP 622
            +GL+ +P  S+IEVK + H F++GD++H    EI  +++++   + + GYVP  K +L 
Sbjct: 421 DRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLH 480

Query: 623 DVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREI 681
            V+E+E ++++  HSEKLA+AFGLI T   TPL IV++ R+C DCH A K+IA +  R I
Sbjct: 481 AVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRI 540

Query: 682 VVRDASRFHHFKDGMCSCGDYW 703
           VVRD  RFHHF+DG CSC DYW
Sbjct: 541 VVRDTHRFHHFEDGQCSCKDYW 562



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 184/381 (48%), Gaps = 40/381 (10%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I    L+ R +EAL LF  +  +G  +  + T+  + +AC  +  + + + + +  ++
Sbjct: 56  AMIGAYALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMA 115

Query: 159 TG--FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF 216
           +G     +  + N +L M+VRCG + +AR++FD M   +  S   +I    ++ + LEA 
Sbjct: 116 SGELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEAL 175

Query: 217 LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276
            LF  +  E     S T A+++ A A    + VGKQ+HS     GF  +V    AL+DMY
Sbjct: 176 ELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMY 235

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
           +KCGS+E +  VF  M  + +V W  +IA  A HG  +EAL+L+ EM   G+  D  TF 
Sbjct: 236 AKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFI 295

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHG--FGLDIVANSAL----------VDFYSKWGRIE 384
            ++R C+           HAGL++    F   +V + A+          +D   + GR++
Sbjct: 296 CVLRACS-----------HAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQ 344

Query: 385 DARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH---VTFLAVL 440
           DA  +   M      ++W  L+     H + E A ++ E  LL+ + P      T L  +
Sbjct: 345 DAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAE--LLSKLAPEDSMAYTLLGNV 402

Query: 441 SACS---------RSGLSERG 452
            A +         R G+++RG
Sbjct: 403 YAATGRYGDQMRVRKGMTDRG 423


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/592 (34%), Positives = 323/592 (54%), Gaps = 36/592 (6%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           ++I  + ++ + +   G +    +  ++   +   G +  +  LF      ++     II
Sbjct: 41  KTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAII 100

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
            G    G + +A   +  +  +  +  + TF+++++    L  I  GK LHS A+K+GF 
Sbjct: 101 HGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILK----LCPIEPGKALHSQAVKLGFD 156

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG------------------------ 299
            +++V   L+D+Y++ G +  AQ +FD M EK+ V                         
Sbjct: 157 SDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGM 216

Query: 300 -------WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
                  WN +I GY  +G   EAL L+  M  +  K +  T   ++  C +L +LE  +
Sbjct: 217 EERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGR 276

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
             H+ +  +G   ++   +ALVD YSK G +EDAR VFDK+  K+V++WN++I GY  HG
Sbjct: 277 WVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHG 336

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
             +EA++LF+ M   G+ P ++TF+ +LSAC  SG    GW+IF  M  ++ I+P+  HY
Sbjct: 337 FSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHY 396

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532
            CM+ LLGR G +++A+ L++    +    +W  LL ACR++G + LG+   E L     
Sbjct: 397 GCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNL 456

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHV 592
                Y++L NIY + G     A +   ++  G++  P CS IEV  + H FL+G  +H 
Sbjct: 457 ANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHP 516

Query: 593 QTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDW 651
           + KEIY  ++ +   +  HGY P+   +L D+ E E +R L  HSEKLA+AFGLINT   
Sbjct: 517 KRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPG 576

Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T ++IV++ R+C DCH   KLI+ +TGR+IVVRD +RFHHF +G CSCGDYW
Sbjct: 577 TTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/438 (27%), Positives = 194/438 (44%), Gaps = 71/438 (16%)

Query: 45  LDKRKWKRSFQRVECCLMEQGLKPRP----KPNKIYTE--ELKESSLPDTQMKKPSAGIC 98
           +DK K      ++   L   GL   P    K  + Y     L  S     + + PS    
Sbjct: 37  IDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFW 96

Query: 99  SQI-EKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           + I     L   + +AL  +  +    G +  + T+ +++  C     I   K + S  +
Sbjct: 97  TAIIHGHALRGLHEQALNFYAQM-LTQGVEPNAFTFSSILKLC----PIEPGKALHSQAV 151

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSC------------------ 199
             GF+ DLY+R  +L ++ R G ++ A++LFD MPE++LVS                   
Sbjct: 152 KLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARV 211

Query: 200 -------------NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
                        N++I G   +G   EA +LF  + +  +     T  +++ A   L  
Sbjct: 212 LFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGA 271

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           +  G+ +HS     G   NV V  AL+DMYSKCGS+EDA+ VFD++ +K  V WN++I G
Sbjct: 272 LESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVG 331

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG---- 362
           YA+HG+S+EAL L+  M   G+   + TF  I+  C            H+G V  G    
Sbjct: 332 YAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSAC-----------GHSGWVTEGWDIF 380

Query: 363 ------FGLD--IVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGR 413
                 +G++  I     +V+   + G +E A  +   M +  + + W  L+     HG+
Sbjct: 381 NKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGK 440

Query: 414 ---GEEAVELF-EQMLLN 427
              GE+ VEL  +Q L N
Sbjct: 441 IALGEKIVELLVDQNLAN 458


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/473 (40%), Positives = 293/473 (61%), Gaps = 2/473 (0%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC-GSIEDAQGVFDE 291
           T+  +++A AGLE++++G+ +H   +K GF  ++ V   ++ MYS C G I  A+ VFDE
Sbjct: 134 TYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDE 193

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M +  +V W+ +I GYA  G S EA+ L+ EM+ + V  D  T   ++  CT L +LE  
Sbjct: 194 MPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELG 253

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K   A + RH     +  ++AL+D ++K G I  A  +F  M  K ++SW ++I G   H
Sbjct: 254 KWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMH 313

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           GRG+EA  LFE+M  +G+ P+ V F+ +LSACS SGL ERG E F SM + +K+ P+  H
Sbjct: 314 GRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEH 373

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           Y CM+++  R GL+ EA   +R  P +    +   L++ACR +G  +LG+   + L   E
Sbjct: 374 YGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHE 433

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P   SNYV+L NIY  +   ++  ++   +  KG++ +P  + IE+  + + F++GD+SH
Sbjct: 434 PLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSH 493

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSD 650
            Q KEIY  VD M  E+ K GY P    +L D++E+++   L+ HSEKLA+AFGL+ T  
Sbjct: 494 KQHKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAIAFGLLRTPP 553

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            TP++IV++ R+C DCH+A K I+ +  REI++RD +RFHHFK G CSCGD+W
Sbjct: 554 GTPIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 158/329 (48%), Gaps = 14/329 (4%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC-GMMIDARRLFDE 190
           TY  ++ AC GL  +   + V   ++  GF+ D++++N ++ M+  C G +  AR++FDE
Sbjct: 134 TYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDE 193

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           MP+ + V+ + +I G    G   EA  LF ++          T  +M+ A   L  + +G
Sbjct: 194 MPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLSACTDLGALELG 253

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           K + +   +      V VS ALIDM++KCG I  A  +F  M+EKT V W ++I G A+H
Sbjct: 254 KWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMH 313

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV-RHGFGLDIVA 369
           G  +EA  L+ EM  SGV  D   F  ++  C+    +E  ++    ++ ++     I  
Sbjct: 314 GRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEH 373

Query: 370 NSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGR---GEEAVELFEQML 425
              +VD Y + G +++A      M +  N +    L++    HG    GE+  +     L
Sbjct: 374 YGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITK-----L 428

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWE 454
           L    P H +   +LS      LS   WE
Sbjct: 429 LMKHEPLHESNYVLLSNIYAKTLS---WE 454



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 164/354 (46%), Gaps = 47/354 (13%)

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG----WNTIIAGY 307
           Q+H+  LK+G  +N  V      + S   + + A          T +     +NT+I  Y
Sbjct: 47  QIHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAY 106

Query: 308 ALHGYSEE-ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           A  G+S++ AL LY  M    +  + FT+  +++ C  L  L   +  H  +V+ GF  D
Sbjct: 107 AQTGHSKDKALALYGIMLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCD 166

Query: 367 IVANSALVDFYS-KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           I   + +V  YS   G I  AR VFD+M   + ++W+A+I GY   GR  EAV LF +M 
Sbjct: 167 IHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQ 226

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
           +  + P+ +T +++LSAC+  G  E G  I   + R    KP  +  A +I++  + G +
Sbjct: 227 MAEVCPDEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNA-LIDMFAKCGDI 285

Query: 486 DEAFALIRGAPFKTTKNMWAA-----------------------------------LLTA 510
            +A  L R    KT  + W +                                   LL+A
Sbjct: 286 SKALKLFRAMNEKTIVS-WTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSA 344

Query: 511 CRVNGNLELGK--FAA-EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           C  +G +E G+  F +  K Y + P K+ +Y  ++++Y  +G +KEA E +R +
Sbjct: 345 CSHSGLVERGREYFGSMMKKYKLVP-KIEHYGCMVDMYCRTGLVKEALEFVRNM 397


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/570 (35%), Positives = 330/570 (57%), Gaps = 2/570 (0%)

Query: 132  TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            T+ + ++AC     + E K V + ++  GF   L + N ++ M+ + GMM++A+++   M
Sbjct: 501  TFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTM 560

Query: 192  PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA-SAGLELISVG 250
            P+ + V+ N +I G  ++ +  EA   +  + E+       T  +++ A SA  +L+  G
Sbjct: 561  PQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHG 620

Query: 251  KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
              +H+  +  GF  + +V  +LI MY+KCG +  +  +FD +  K+ + WN ++A  A H
Sbjct: 621  MPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHH 680

Query: 311  GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
            G  EEAL ++ EMR+ GV +D F+FS  +     LA LE  +Q H  +++ GF  D+   
Sbjct: 681  GCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVT 740

Query: 371  SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
            +A +D Y K G + D   +  + + ++ +SWN LI+ +  HG  ++A E F +ML  G +
Sbjct: 741  NAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPK 800

Query: 431  PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
            P+HVTF+++LSAC+  GL + G   + SM+R+  + P   H  C+I+LLGR G L  A  
Sbjct: 801  PDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEG 860

Query: 491  LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
             I+  P       W +LL ACR++GNLEL +  AE L  ++P   S YV+  N+  +SGK
Sbjct: 861  FIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGK 920

Query: 551  LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
             ++   + + +    ++  PACSW+++K + H F  G++ H Q   I  K+  +M    +
Sbjct: 921  WEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKE 980

Query: 611  HGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
             GYVP+    L D+D EQ++  L  HSE+LA+AFGLINT + + L+I ++ R+C DCH+ 
Sbjct: 981  AGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSV 1040

Query: 670  IKLIAMVTGREIVVRDASRFHHFKDGMCSC 699
             K ++ + GR+IV+RD  RFHHF  G CSC
Sbjct: 1041 YKFVSGIVGRKIVLRDPYRFHHFSGGKCSC 1070



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 110/343 (32%), Positives = 188/343 (54%), Gaps = 14/343 (4%)

Query: 110 YREALELFEILEFEG----GFDVGSSTYDALISACIGLRS---IREVKRVFSYMLSTGFE 162
           Y EA+ LF  +   G    GF V S     LI+AC   RS     E  +V  +++ TG  
Sbjct: 176 YEEAVGLFCQMWGLGVEPNGFMVAS-----LITACS--RSGYMADEGFQVHGFVVKTGIL 228

Query: 163 PDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL 222
            D+Y+   ++  +   G++ +A++LF+EMP+ N+VS   ++ G  DSG+  E   ++  +
Sbjct: 229 GDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRM 288

Query: 223 WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
            +E       TFAT+  +   LE   +G Q+    ++ GF D+V V+ +LI M+S   S+
Sbjct: 289 RQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSV 348

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           E+A  VFD M+E   + WN +I+ YA HG   E+L  ++ MR    + +  T S ++ +C
Sbjct: 349 EEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVC 408

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
           + + +L+  +  H  +V+ G   ++   + L+  YS+ GR EDA  VF  M  +++ISWN
Sbjct: 409 SSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWN 468

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
           +++A Y   G+  + +++  ++L  G   NHVTF + L+ACS 
Sbjct: 469 SMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSN 511



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 215/452 (47%), Gaps = 22/452 (4%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E L +++ +  EG      +T+  + S+C  L       +V  +++  GFE  + + N +
Sbjct: 280 EVLNVYQRMRQEG-VSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSL 338

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M      + +A  +FD M E +++S N +I+     G   E+   F  +    ++  S
Sbjct: 339 ISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 398

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T ++++   + ++ +  G+ +H   +K+G   NV +   L+ +YS+ G  EDA+ VF  
Sbjct: 399 TTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQA 458

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M+E+  + WN+++A Y   G   + L +  E+   G  M+H TF+  +  C+    L  +
Sbjct: 459 MTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIES 518

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K  HA ++  GF   ++  +ALV  Y K G + +A+ V   M   + ++WNALI G+  +
Sbjct: 519 KIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAEN 578

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS------RSGLSERGWEIFQSMSRDHKI 465
               EAV+ ++ +   G+  N++T ++VL ACS      + G+      +      D  +
Sbjct: 579 EEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYV 638

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
           K        +I +  + G L+ +  +  G   K+    W A++ A   +G  E     A 
Sbjct: 639 KNS------LITMYAKCGDLNSSNYIFDGLGNKSPIT-WNAMVAANAHHGCGE----EAL 687

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
           K++G    ++ N  V L+ ++ SG L   A +
Sbjct: 688 KIFG----EMRNVGVNLDQFSFSGGLAATANL 715



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 136/261 (52%), Gaps = 1/261 (0%)

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           ++  N ++ M+ + G +  AR +FDEM  RN  S + +++G +  G Y EA  LF  +W 
Sbjct: 129 IFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWG 188

Query: 225 EFSDCGSRTFATMIRA-SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
              +      A++I A S    +   G Q+H   +K G   +V+V  AL+  Y   G + 
Sbjct: 189 LGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVY 248

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
           +AQ +F+EM +   V W +++ GY+  G   E L++Y  MR  GV  +  TF+ +   C 
Sbjct: 249 NAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCG 308

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            L       Q    ++++GF   +   ++L+  +S +  +E+A +VFD M   ++ISWNA
Sbjct: 309 LLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNA 368

Query: 404 LIAGYGNHGRGEEAVELFEQM 424
           +I+ Y +HG   E++  F  M
Sbjct: 369 MISAYAHHGLCRESLRCFHWM 389



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/243 (32%), Positives = 128/243 (52%), Gaps = 10/243 (4%)

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS---VGKQLHSCALKMG 261
           G +D GD  + FL      ++ +D G R    +     G   I+    GK LH+  +   
Sbjct: 71  GCLD-GDIAKVFL-----QQQHTDYGIRCLNAVNFPLKGFSEITSQMAGKALHAFCIVGS 124

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
               +F +  LI+MYSK G+IE A+ VFDEM  +    W+T+++GY   G  EEA+ L+ 
Sbjct: 125 VNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFC 184

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASL-EHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380
           +M   GV+ + F  + +I  C+R   + +   Q H  +V+ G   D+   +ALV FY   
Sbjct: 185 QMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSI 244

Query: 381 GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
           G + +A+ +F++M   NV+SW +L+ GY + G   E + ++++M   G+  N  TF  V 
Sbjct: 245 GLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVT 304

Query: 441 SAC 443
           S+C
Sbjct: 305 SSC 307



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 3/175 (1%)

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
           + + S    K  HA  +     L I   + L++ YSK+G IE AR+VFD+M  +N  SW+
Sbjct: 105 SEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWS 164

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG-LSERGWEIFQSMSR 461
            +++GY   G  EEAV LF QM   G+ PN     ++++ACSRSG +++ G+++   + +
Sbjct: 165 TMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVK 224

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
              +    +  A ++   G  GL+  A  L    P     + W +L+     +GN
Sbjct: 225 TGILGDVYVGTA-LVHFYGSIGLVYNAQKLFEEMPDHNVVS-WTSLMVGYSDSGN 277



 Score = 59.3 bits (142), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 96/207 (46%), Gaps = 3/207 (1%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL++F  +    G ++   ++   ++A   L  + E +++   ++  GFE DL++ N  
Sbjct: 685 EALKIFGEMR-NVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAA 743

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG M D  ++  +   R+ +S N++I+     G + +A   F ++ +       
Sbjct: 744 MDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDH 803

Query: 232 RTFATMIRASAGLELISVGKQLH-SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
            TF +++ A     L+  G   + S   + G    +     +ID+  + G +  A+G   
Sbjct: 804 VTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIK 863

Query: 291 EMS-EKTTVGWNTIIAGYALHGYSEEA 316
           EM      + W +++A   +HG  E A
Sbjct: 864 EMPVPPNDLAWRSLLAACRIHGNLELA 890


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/602 (32%), Positives = 346/602 (57%), Gaps = 8/602 (1%)

Query: 107 NKRYREALELFE--ILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           N  +R AL++++  + +   G    + T+ + + AC  +  I + + + +  +++G+  D
Sbjct: 138 NGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASD 197

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
             ++N ++ M+ +CG +  AR++FD +  R++++ N +I+G    G   +A  LF  +  
Sbjct: 198 SIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGP 257

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS-IE 283
                   TF  ++ A   LE +  G+ +H    + G+  ++ +   L++MY+KC S +E
Sbjct: 258 NDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLE 317

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
           +A+ VF+ +  +  + WN +I  Y  +G +++ALD++ +M+   V  +  T S ++  C 
Sbjct: 318 EARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACA 377

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            L +    K  HA +       D+V  ++L++ Y++ G ++D   VF  +  K+++SW+ 
Sbjct: 378 VLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWST 437

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           LIA Y  HG     +E F ++L  G+  + VT ++ LSACS  G+ + G + F SM  DH
Sbjct: 438 LIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDH 497

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            + P   H+ CM++LL R G L+ A  LI   PF      W +LL+ C+++ + +     
Sbjct: 498 GLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARV 557

Query: 524 AEKLYGMEPEKLSNYVVLL-NIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPH 582
           A+KL+ +E E   + V LL N+Y  +G+     +V +T  R+  R  P CS+IE+    H
Sbjct: 558 ADKLFELESEDEHSTVTLLSNVYAEAGRWD---DVRKTRNRRAARKNPGCSYIEINDTVH 614

Query: 583 VFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAV 641
            F++GD+SH + + I  ++ R+  ++   GYVP+ + +L +V E+E +++L YHSEKLA+
Sbjct: 615 EFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAI 674

Query: 642 AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
           A+GLI+T   TPL IV++ R C DCH A K I+ + GR+IVVRD++RFHHF++G CSC D
Sbjct: 675 AYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKD 734

Query: 702 YW 703
           YW
Sbjct: 735 YW 736



 Score =  209 bits (532), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 147/541 (27%), Positives = 269/541 (49%), Gaps = 58/541 (10%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGF-EPDL 165
           N  YREAL  +  +  EG      + +   I  C   + +++ + + + +L T   E D+
Sbjct: 36  NGHYREALGYYRRMVLEG-LRPDGAMFVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDI 94

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            +   ++ M+ RC  +  AR+ FDEM ++ LV+ N +IAG   +GD+  A  ++ D+  +
Sbjct: 95  ILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSK 154

Query: 226 FSDC---GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
             +     + TF++ + A + +  IS G+++ +  +  G+  +  V  ALI+MYSKCGS+
Sbjct: 155 SPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKCGSL 214

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           E A+ VFD +  +  + WNT+I+GYA  G + +AL+L+  M  +  K +  TF  ++  C
Sbjct: 215 ESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLLTAC 274

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW-GRIEDARHVFDKMLCKNVISW 401
           T L  LE  +  H  +  HG+  D+V  + L++ Y+K    +E+AR VF+++  ++VI+W
Sbjct: 275 TNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITW 334

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           N LI  Y  +G+ ++A+++F+QM L  + PN +T   VLSAC+  G   +G +   ++  
Sbjct: 335 NILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQG-KAVHALIA 393

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEA---FALIRGAPFKTTKNMWAA------------ 506
             + K   +    ++ +  R G LD+    FA IR     +   + AA            
Sbjct: 394 SGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLE 453

Query: 507 -------------------LLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNI 544
                               L+AC   G L+ G  +   +   +G+ P+   +++ ++++
Sbjct: 454 HFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPD-YRHFLCMVDL 512

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLP-ACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
            + +G+L+ A  +I       +  LP A +W          LSG + H  TK   R  D+
Sbjct: 513 LSRAGRLEAAENLIHD-----MPFLPDAVAWTS-------LLSGCKLHNDTKRAARVADK 560

Query: 604 M 604
           +
Sbjct: 561 L 561



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 158/290 (54%), Gaps = 4/290 (1%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+ +CG + DA  +F  +   N VS  +I+A    +G Y EA   +  +  E        
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGD-NVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           F   I   +  + +  G+ LH+  L+    + ++ +  ALI MY++C  +E A+  FDEM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEM---RDSGVKMDHFTFSMIIRICTRLASLE 349
            +KT V WN +IAGY+ +G    AL +Y +M      G+K D  TFS  +  C+ +  + 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             ++  A  V  G+  D +  +AL++ YSK G +E AR VFD++  ++VI+WN +I+GY 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
             G   +A+ELF++M  N  +PN VTF+ +L+AC+     E+G  I + +
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKV 290


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/599 (36%), Positives = 337/599 (56%), Gaps = 39/599 (6%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVL--LMHVRCGMMIDARRLFDEMPERNLVSCN- 200
           +S+ ++K+  +++++TG        N++L  L+    G +  A +LFD++P+ ++   N 
Sbjct: 26  KSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSYAHQLFDQIPKPDVFIYNT 85

Query: 201 MIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQLHSCALK 259
           MI A  +       +  +FL +        +R TF  + +A      +  G+Q+   A+K
Sbjct: 86  MIKAHAVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIK 145

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFD----------------------------- 290
           +G   N+FV+ A+I MY+  G +++A+ VFD                             
Sbjct: 146 IGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEM 205

Query: 291 --EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
             EMSE+  V W TIIAGY   G  +EALDL++EM  +G   + FT +  +  C  L +L
Sbjct: 206 FDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVAL 265

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF--DKMLCKNVISWNALIA 406
           +  +  H  + +    ++    ++L+D Y+K G I+ A  VF  +  L   V  WNA+I 
Sbjct: 266 DQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIG 325

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GY  HG+ +EA++LFEQM +  + PN VTF+A+L+ACS   L E G   F+SM+  + I+
Sbjct: 326 GYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIE 385

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P   HY CM++LLGR GLL EA   +   P      +W ALL ACR++ ++E G+   + 
Sbjct: 386 PEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKI 445

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           +  ++ + +  +V+L N+Y++SG+  EA  V + +   G +  P CS IE+    H FL 
Sbjct: 446 IKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLV 505

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR--VLSYHSEKLAVAFG 644
           GD+SH QTK++Y  +D M  ++   GYVPE   +L D+D++E +   LS HSEKLA+AFG
Sbjct: 506 GDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFG 565

Query: 645 LINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           LINT   T ++IV++ R+C DCH A K I+ V  REI+VRD  R+HHFKDG CSC DYW
Sbjct: 566 LINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 624


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/568 (37%), Positives = 322/568 (56%), Gaps = 48/568 (8%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRASA 242
           AR++F  M   N  S N +I  + +S D  +A L+F+++ E+ S +    TF ++ +A  
Sbjct: 64  ARKIFRSMHRPNCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACG 123

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA----------------- 285
             E +  G+Q+H  A+K G   + FV   ++ MY  CG +EDA                 
Sbjct: 124 RAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIR 183

Query: 286 -----------------------------QGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
                                        + +FDEM +++ V WN +IAGYA  G+ +EA
Sbjct: 184 DKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEA 243

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
           ++++ EM+ + V  ++ T   ++   +RL +LE  K  H   VR+  G+D V  SAL+D 
Sbjct: 244 VEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDM 303

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           Y+K G IE A  VF+ +  +NV++W+ +IAG   HGR ++ ++ FE M   G+ P+ VT+
Sbjct: 304 YAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTY 363

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
           + +LSACS +GL   G   F  M R   ++PR  HY CM++LLGR GLL+E+  LI   P
Sbjct: 364 IGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMP 423

Query: 497 FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
            K    +W ALL AC+++GN+E+GK  AE L  + P    +YV L NIY S G  +  A+
Sbjct: 424 IKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAK 483

Query: 557 VIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPE 616
           V   ++   +R  P CSWIE+    H FL  D SH ++K+I+  +  M   +   GY P 
Sbjct: 484 VRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPN 543

Query: 617 EKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAM 675
              +L ++DE+++   L+YHSEK+A+AFGLI+T   TPL+I ++ RIC DCH++IKLI+ 
Sbjct: 544 TTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISK 603

Query: 676 VTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +  R+I+VRD  RFHHF +G CSC DYW
Sbjct: 604 IYKRKIIVRDRKRFHHFVNGSCSCMDYW 631



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 140/264 (53%), Gaps = 2/264 (0%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D+ + N ++  +VR G +  AR LFDEMP+R++VS N++IAG   SG + EA  +F ++ 
Sbjct: 192 DVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQ 251

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
                    T  +++ A + L  + +GK +H  A++   G +  +  ALIDMY+KCGSIE
Sbjct: 252 MAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIE 311

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
            A  VF+ + ++  V W+TIIAG A+HG +++ LD + +M  +GV     T+  ++  C+
Sbjct: 312 KALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACS 371

Query: 344 RLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISW 401
               +   +     +VR  G    I     +VD   + G +E++  +   M  K + + W
Sbjct: 372 HAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIW 431

Query: 402 NALIAGYGNHGRGEEAVELFEQML 425
            AL+     HG  E    + E ++
Sbjct: 432 KALLGACKMHGNVEMGKRVAEHLM 455


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 322/564 (57%), Gaps = 4/564 (0%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV--RCGMMIDARRLFDEMPERNLVSCNM 201
           +S+ E K+V +++L  G   D +  + ++      R G M  A  +F ++ E      N 
Sbjct: 42  KSMEEFKKVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFRQIEEPGSFEYNT 101

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           +I G ++S D  EA LL++++ E   +  + T+  +++A + L  +  G Q+H+     G
Sbjct: 102 MIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAG 161

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
              +VFV   LI MY KCG+IE A  VF++M EK+   W++II  +A      E L L  
Sbjct: 162 LEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLG 221

Query: 322 EM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380
           +M R+   + +       +  CT L S    +  H  L+R+   L++V  ++L+D Y K 
Sbjct: 222 DMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKC 281

Query: 381 GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
           G +E    VF  M  KN  S+  +IAG   HGRG EA+ +F  ML  G+ P+ V ++ VL
Sbjct: 282 GSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDVVYVGVL 341

Query: 441 SACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTT 500
           SACS +GL + G++ F  M  +H IKP   HY CM++L+GR G+L EA+ LI+  P K  
Sbjct: 342 SACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPN 401

Query: 501 KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560
             +W +LL+AC+V+ NLE+G+ AA+ ++ +      +Y+VL N+Y  + K    A +   
Sbjct: 402 DVVWRSLLSACKVHHNLEIGEIAADNIFKLNKHNPGDYLVLANMYARAQKWANVARIRTE 461

Query: 561 LRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTL 620
           +  K L   P  S +E  +  + F+S D+S  Q + IY  + +M  ++   GY P+   +
Sbjct: 462 MVEKNLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQV 521

Query: 621 LPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGR 679
           L DVDE E+R  L +HS+KLA+AF LI TS+ +P++I ++ R+C DCH   K I+++  R
Sbjct: 522 LLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPVRISRNLRMCNDCHTYTKFISVIYER 581

Query: 680 EIVVRDASRFHHFKDGMCSCGDYW 703
           EI VRD++RFHHFKDG CSC DYW
Sbjct: 582 EITVRDSNRFHHFKDGTCSCKDYW 605



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 163/333 (48%), Gaps = 35/333 (10%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL L+ +   E G +  + TY  ++ AC  L +++E  ++ +++ + G E D++++N +
Sbjct: 114 EALLLY-VEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGL 172

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG +  A  +F++M E+++ S + II        + E  +L  D+  E      
Sbjct: 173 ISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAE 232

Query: 232 RT-FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
            +   + + A   L   ++G+ +H   L+     NV V  +LIDMY KCGS+E    VF 
Sbjct: 233 ESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQ 292

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            M+ K    +  +IAG A+HG   EAL ++ +M + G+  D   +  ++  C+       
Sbjct: 293 NMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTPDDVVYVGVLSACS------- 345

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
               HAGLV+ GF                + R++     F+ M+   +  +  ++   G 
Sbjct: 346 ----HAGLVKEGFQC--------------FNRMQ-----FEHMIKPTIQHYGCMVDLMGR 382

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
            G  +EA +L + M    ++PN V + ++LSAC
Sbjct: 383 AGMLKEAYDLIKSM---PIKPNDVVWRSLLSAC 412



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 10/112 (8%)

Query: 339 IRICTRLASLEHAKQAHAGLVRHGF------GLDIVANSALVDFYSKWGRIEDARHVFDK 392
           + +  R  S+E  K+ HA +++ G       G ++VA+ AL    S+WG +E A  +F +
Sbjct: 35  LSLLKRCKSMEEFKKVHAHILKLGLFYDSFCGSNLVASCAL----SRWGSMEYACSIFRQ 90

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           +       +N +I G  N    EEA+ L+ +ML  G+ P++ T+  VL ACS
Sbjct: 91  IEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACS 142



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 90/206 (43%), Gaps = 8/206 (3%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + E L L   +  EG      S   + +SAC  L S    + +   +L    E ++ ++ 
Sbjct: 213 WHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKT 272

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+V+CG +     +F  M  +N  S  ++IAG+   G   EA  +F D+ EE    
Sbjct: 273 SLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREALRVFSDMLEEGLTP 332

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC----ALIDMYSKCGSIEDA 285
               +  ++ A +   L+  G Q   C  +M F   +  +      ++D+  + G +++A
Sbjct: 333 DDVVYVGVLSACSHAGLVKEGFQ---CFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEA 389

Query: 286 QGVFDEMSEKTT-VGWNTIIAGYALH 310
             +   M  K   V W ++++   +H
Sbjct: 390 YDLIKSMPIKPNDVVWRSLLSACKVH 415


>gi|224135801|ref|XP_002327307.1| predicted protein [Populus trichocarpa]
 gi|222835677|gb|EEE74112.1| predicted protein [Populus trichocarpa]
          Length = 527

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 219/542 (40%), Positives = 317/542 (58%), Gaps = 27/542 (4%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+ +CG +  AR++FDEM  RN+VS   +I+G    G   E F LF D+     DC    
Sbjct: 1   MYAKCGDLDRARQVFDEMGRRNVVSWTALISGYAQHGRSYECFSLFSDM---LVDCYPNE 57

Query: 234 FATMIRASAGLELISV-GKQLHSCALKMGFGDNVFVSCALIDMYSK------CGSIEDAQ 286
           FA    AS  +    V GKQ+H+ ALKMG   +V+V  ALI  YSK       G   +A 
Sbjct: 58  FAF---ASVIISCDYVCGKQVHALALKMGLIASVYVGNALITRYSKSCEDNFVGYGSEAC 114

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VF+ M  +  V WN++IA        EEAL L+ ++   G+  D  TFS++++ C    
Sbjct: 115 RVFESMEFRNLVSWNSMIAA------EEEALLLFRQLYREGLAPDWCTFSIVLKACAGFV 168

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           +  HA   ++ +V+ GF  D V  + L+  Y++ G I  ++ VFDKM  ++V+SWN++I 
Sbjct: 169 TERHALAVYSQVVKAGFEDDRVLANTLIHAYARCGSISFSKQVFDKMRSRDVVSWNSMIK 228

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
            Y  HG+ +EA+ LF +M    +RP+  T +A+LSACS +GL E G  IF SMS +H + 
Sbjct: 229 AYALHGQAKEALHLFSEM---NVRPDSATMVALLSACSHAGLVEEGINIFDSMSMNHGVS 285

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P+  HYACM+++LGR GLL EA  LI   P K    +W+ALL++CR  G  +L K AA+K
Sbjct: 286 PQLDHYACMVDILGRAGLLLEAGELISRMPMKPDSVVWSALLSSCRKYGETQLAKLAADK 345

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           L  +EP     YV + NIY S G   EA  +   +    +R  P  SWIE++ + H F S
Sbjct: 346 LKELEPGNSLGYVQISNIYCSGGSYNEAGLIRDEMNGSRVRKEPGLSWIEIENRVHEFAS 405

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGL 645
           G + H Q + IY K+  ++ ++   GYVPE    L D++E+ +Q  L +HSEKLA+ F L
Sbjct: 406 GGRRHPQREAIYAKLYSLIGQLKGVGYVPETSLALQDIEEEHKQEQLYHHSEKLALVFAL 465

Query: 646 INTSDWT----PLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
           ++          ++IV++ RIC DCHN +KL + +  +EIVVRD++RFHHFK+ MCSC D
Sbjct: 466 MSEGSLCCGGGVIRIVKNIRICVDCHNFMKLASDLLQKEIVVRDSNRFHHFKNRMCSCND 525

Query: 702 YW 703
           YW
Sbjct: 526 YW 527



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 6/207 (2%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL LF  L +  G      T+  ++ AC G  + R    V+S ++  GFE D  + N +
Sbjct: 137 EALLLFRQL-YREGLAPDWCTFSIVLKACAGFVTERHALAVYSQVVKAGFEDDRVLANTL 195

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           +  + RCG +  ++++FD+M  R++VS N +I      G   EA  LF ++        S
Sbjct: 196 IHAYARCGSISFSKQVFDKMRSRDVVSWNSMIKAYALHGQAKEALHLFSEMNVRPD---S 252

Query: 232 RTFATMIRASAGLELISVGKQL-HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
            T   ++ A +   L+  G  +  S ++  G    +     ++D+  + G + +A  +  
Sbjct: 253 ATMVALLSACSHAGLVEEGINIFDSMSMNHGVSPQLDHYACMVDILGRAGLLLEAGELIS 312

Query: 291 EMSEKT-TVGWNTIIAGYALHGYSEEA 316
            M  K  +V W+ +++    +G ++ A
Sbjct: 313 RMPMKPDSVVWSALLSSCRKYGETQLA 339


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/588 (34%), Positives = 339/588 (57%), Gaps = 13/588 (2%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC---- 178
           E  F +G     +L+  C    ++ E K+  + +L  G   D +  + ++     C    
Sbjct: 24  ELSFKLGEKECVSLLKKC---SNMEEFKQSHARILKLGLFGDSFCASNLV---ATCALSD 77

Query: 179 -GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATM 237
            G M  A  +F +M E      N ++ G +   +  EA + + ++ E      + T+ T+
Sbjct: 78  WGSMDYACSIFRQMDELGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTL 137

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           ++A A L  +  G Q+H+  LK+G  ++VFV  +LI MY KCG I     VF++M+E++ 
Sbjct: 138 LKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSV 197

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGV-KMDHFTFSMIIRICTRLASLEHAKQAHA 356
             W+ +I  +A  G   + L L  +M + G  + +      ++  CT L +L+  +  H 
Sbjct: 198 ASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHG 257

Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
            L+R+  GL+++  ++L++ Y K G +     +F KM  KN +S++ +I+G   HG G E
Sbjct: 258 FLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGRE 317

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
            + +F +ML  G+ P+ + ++ VL+ACS +GL + G + F  M  +H I+P   HY CM+
Sbjct: 318 GLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMV 377

Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
           +L+GR G +DEA  LI+  P +    +W +LL+A +V+ NL+ G+ AA++L+ ++ +K S
Sbjct: 378 DLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKAS 437

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKE 596
           +YVVL N+Y  + + ++ A+    +  KGL   P  S +EVK++ H F+S D  H Q++ 
Sbjct: 438 DYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSES 497

Query: 597 IYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQ 655
           +Y  + +M  ++   GY P+   +L DVDE+E++  LS HS+KLA+A+ LI+TS  +P++
Sbjct: 498 VYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIR 557

Query: 656 IVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           IV++ R+C DCH   KLI+++  REI VRD  RFHHFKDG CSC DYW
Sbjct: 558 IVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 95/203 (46%), Gaps = 2/203 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + + L L   +  EG +    S   +++SAC  L ++   + V  ++L      ++ +  
Sbjct: 213 WSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVET 272

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+++CG +     LF +M ++N +S +++I+G+   G   E   +F ++ E+  + 
Sbjct: 273 SLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEP 332

Query: 230 GSRTFATMIRASAGLELISVGKQ-LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               +  ++ A +   L+  G Q  +   L+ G    +     ++D+  + G I++A  +
Sbjct: 333 DDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALEL 392

Query: 289 FDEMS-EKTTVGWNTIIAGYALH 310
              M  E   V W ++++   +H
Sbjct: 393 IKSMPMEPNDVLWRSLLSASKVH 415


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 207/606 (34%), Positives = 337/606 (55%), Gaps = 16/606 (2%)

Query: 110 YREALELFEILEFEG----GFDVGSSTYDALISACIGLRSIREV-KRVFSYMLSTGFEPD 164
           Y E L+L   +   G     F +GS    AL S  + L ++    K +  Y +  G + D
Sbjct: 192 YEEMLKLLVKMHHTGLRLNAFTLGS----ALKSCYLNLNNMVSYGKTLHGYTVKQGLDLD 247

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDY-----LEAFLLF 219
           + +   +L M+ + G + DA +LF   P +N+V  N +IAG I + D       EA  LF
Sbjct: 248 IVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLF 307

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
             +  +       TF+++I+    +E    GKQ+H+   K     + F+   LI++YS  
Sbjct: 308 SQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLL 367

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           GS ED    F+   +   V W T+IAGYA +G  E AL L+YE+  SG K D F  + ++
Sbjct: 368 GSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTML 427

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
             C  +A+    +Q H   V+ G G   +  ++ +  Y+K G ++ A+  F+++   +V+
Sbjct: 428 SACADVAAERSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIKNPDVV 487

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           SW+ +I     HG  ++A+ LFE M   G+ PN +TFL VL+ACS  GL E G   ++SM
Sbjct: 488 SWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACSHGGLVEEGLRYYESM 547

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
            +D+ +K    H  C+++LL R G L +A   I  + F     MW  LL+ CR+  ++  
Sbjct: 548 KKDYDMKINVKHCTCIVDLLSRAGRLLDAKNFILNSGFGDHPVMWRTLLSGCRIYKDIVT 607

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
           GK  AEKL  ++P++ S+YV+L NIY  +G    A ++   ++ +G+R  P  SWIEV  
Sbjct: 608 GKHVAEKLIELDPQESSSYVLLYNIYTDAGIDLPATKIRELMKDRGIRKEPGQSWIEVGN 667

Query: 580 QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPE--EKTLLPDVDEQEQRVLSYHSE 637
           + H F+ GD SH  ++ IY+K++ M+ +  K GY+ +  +   +   + +    +++HSE
Sbjct: 668 EVHSFVVGDISHPMSQIIYKKLEGMLEKKRKIGYIDQKIQNVTISTKEVKGTLGVNHHSE 727

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLAV+FG+++     P++++++ R+C DCH  +KLI++V  REI++RD+ RFHHFK+G C
Sbjct: 728 KLAVSFGIVSLPPSAPVKVMKNLRVCHDCHATMKLISVVEKREIILRDSLRFHHFKEGSC 787

Query: 698 SCGDYW 703
           SC DYW
Sbjct: 788 SCNDYW 793



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/400 (29%), Positives = 199/400 (49%), Gaps = 9/400 (2%)

Query: 126 FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
           F + S  Y  L+       S    K   ++M+ T F P L++ N  L ++ + G M +A+
Sbjct: 5   FPLDSVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQ 64

Query: 186 RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
           +LFD M ER+++S N++I+G    G Y +A  LF +           ++A ++ A   ++
Sbjct: 65  KLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIK 124

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
             ++GK +H  A+  G G  VF++  LIDMY KC  I+ A+ +F+   E   V WN++I 
Sbjct: 125 DFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLIT 184

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS--LEHAKQAHAGLVRHGF 363
           GYA  G  EE L L  +M  +G++++ FT    ++ C    +  + + K  H   V+ G 
Sbjct: 185 GYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGL 244

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR-----GEEAV 418
            LDIV  +AL+D Y+K G + DA  +F     +NV+ +NA+IAG+            EA+
Sbjct: 245 DLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEAL 304

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478
           +LF QM   G++P+  TF +++  C+     E G +I   + + H I+      + +IEL
Sbjct: 305 KLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICK-HNIQSDEFIGSTLIEL 363

Query: 479 LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
               G  ++        P K     W  ++     NG  E
Sbjct: 364 YSLLGSTEDQLKCFNSTP-KLDIVSWTTMIAGYAQNGQFE 402


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 209/606 (34%), Positives = 344/606 (56%), Gaps = 38/606 (6%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL--FDEMPE 193
           +++   G +++ ++K+V + +L  G +   Y+  +++    +  + +D   L  F+++  
Sbjct: 49  IVTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNY 108

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL 253
            N    N +I G +      E+   +  + +E     S TF  + +A      + +G+Q+
Sbjct: 109 PNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQI 168

Query: 254 HS-CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE------------------ 294
           H    L  GFG+++ V  ++IDMY KCG +E  + VFDEM                    
Sbjct: 169 HGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGN 228

Query: 295 -------------KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
                        K  V W  +++G+A +    EA+  + +M++ GV+ D  T   +I  
Sbjct: 229 MESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISA 288

Query: 342 CTRLASLEHAKQAHAGLVRHGFG--LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
           C +L + ++A        +  FG    +V  SAL+D YSK G + DA  VF  M  +NV 
Sbjct: 289 CAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVY 348

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           S++++I G+  HGR  +A++LF++M+   ++PN VTF+ VL+ACS +G+ E+GW+IF+ M
Sbjct: 349 SYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELM 408

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
            + + IKP A HY CM++LLGR G L EA  L++  P +    +W ALL ACR++ + ++
Sbjct: 409 EKCYGIKPSADHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDI 468

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
              AA  L+ +EP  + NY++L NIY S G+  + + V + +R +GLR  PA SWIE +K
Sbjct: 469 AAIAANHLFELEPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEK 528

Query: 580 -QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSE 637
              H F SGD +H ++ EI + ++ ++  +   GY P   ++  DV DE ++R+L  HSE
Sbjct: 529 GMVHEFFSGDMTHPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSE 588

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+AFGLI+T   + ++IV++ RIC DCH+ I   + +TGREI+VRD  RFHHF DG+C
Sbjct: 589 KLALAFGLISTIPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGIC 648

Query: 698 SCGDYW 703
           SCG++W
Sbjct: 649 SCGNFW 654


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/602 (35%), Positives = 337/602 (55%), Gaps = 41/602 (6%)

Query: 140 CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSC 199
           C   +S      + S ++  GF+    + N +L ++ +CG++  A +LFDEMP R+ VS 
Sbjct: 13  CARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSW 72

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHS 255
             I+         L        L   F+  G +     FA ++RA + L  + +GKQ+H+
Sbjct: 73  ASILTA---HNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHA 129

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
             +   F D+  V  +LIDMY+KCG  ++A+ VFD +  K +V W ++I+GYA  G   E
Sbjct: 130 RFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCE 189

Query: 316 ALDLYY-------------------------------EMRDSGVKM-DHFTFSMIIRICT 343
           A+DL+                                EMR  G+ + D    S ++  C 
Sbjct: 190 AMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCA 249

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            LA LE  KQ H  ++  GF   +  ++ALVD Y+K   I  A+ +F +M  K+VISW +
Sbjct: 250 NLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTS 309

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           +I G   HG+ EEA+ L+++M+L+ ++PN VTF+ +L ACS +GL  RG E+F+SM+ D+
Sbjct: 310 IIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDY 369

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            I P   HY C+++LL R G LDEA  L+   PFK  +  WA+LL+AC  + NLE+G   
Sbjct: 370 SINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRI 429

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
           A+++  ++PE  S Y++L N+Y  +      ++V + +    +R  P  S I+  K   V
Sbjct: 430 ADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQV 489

Query: 584 FLSGDQ-SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAV 641
           F +G+   H    EI   +  +  E+ K GYVP    +L D+++QE ++ L +HSE+LAV
Sbjct: 490 FHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAV 549

Query: 642 AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
           A+GL+     T ++IV++ RIC DCHN +K I+ +  REI+VRDA+R+HHFK+G CSC D
Sbjct: 550 AYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCND 609

Query: 702 YW 703
           +W
Sbjct: 610 FW 611



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 174/376 (46%), Gaps = 58/376 (15%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           R  L +   +    G       +  ++ AC  L  +R  K+V +  + + F  D  +++ 
Sbjct: 86  RRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXFCDDEVVKSS 145

Query: 171 VLLMHVRCGMMIDARRLFDEM-------------------------------PERNLVSC 199
           ++ M+ +CG   +AR +FD +                               P RNL S 
Sbjct: 146 LIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSW 205

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSD-CGSRTFATMIRASAGLELISVGKQLHSCAL 258
             +I+G+I SG  + +F LF ++  E  D       ++++   A L L+ +GKQ+H   +
Sbjct: 206 TALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVI 265

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
            +GF   +F+S AL+DMY+KC  I  A+ +F  M  K  + W +II G A HG +EEAL 
Sbjct: 266 ALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALT 325

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL------DIVAN-- 370
           LY EM  S +K +  TF  ++  C+           HAGLV  G  L      D   N  
Sbjct: 326 LYDEMVLSRIKPNEVTFVGLLYACS-----------HAGLVSRGRELFRSMTTDYSINPS 374

Query: 371 ----SALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQML 425
               + L+D  S+ G +++A ++ DK+  K +  +W +L++    H   E  V + +++L
Sbjct: 375 LQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVL 434

Query: 426 LNGMRPNHVTFLAVLS 441
              ++P   +   +LS
Sbjct: 435 --DLKPEDPSTYILLS 448


>gi|356562443|ref|XP_003549481.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 836

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/611 (34%), Positives = 326/611 (53%), Gaps = 75/611 (12%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           GF     TY +++SAC  +  ++    + + +L      D ++ + ++ M+ +CG +  A
Sbjct: 269 GFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKCGCLALA 328

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           RR+F+ + E+N VS   +I+G+   G   +A  LF  + +        T AT++   +G 
Sbjct: 329 RRVFNSLGEQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVVLDEFTLATILGVCSGQ 388

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC------------------------- 279
              + G+ LH  A+K G    V V  A+I MY++C                         
Sbjct: 389 NYAATGELLHGYAIKSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMPLRDTISWTAMI 448

Query: 280 ------GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
                 G I+ A+  FD M E+  + WN++++ Y  HG+SEE + LY  MR   VK D  
Sbjct: 449 TAFSQNGDIDRARQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKLYVLMRSKAVKPDWV 508

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           TF+  IR C  LA+++   Q  + + + G   D+   +++V  YS+ G+I++AR VFD +
Sbjct: 509 TFATSIRACADLATIKLGTQVVSHVTKFGLSSDVSVANSIVTMYSRCGQIKEARKVFDSI 568

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             KN+ISWNA++A +  +G G +A+E +E ML    +P+H++++AVLS            
Sbjct: 569 HVKNLISWNAMMAAFAQNGLGNKAIETYEDMLRTECKPDHISYVAVLS------------ 616

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
                                  +LLGR GLLD+A  LI G PFK    +W ALL ACR+
Sbjct: 617 -----------------------DLLGRAGLLDQAKNLIDGMPFKPNATVWGALLGACRI 653

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACS 573
           + +  L + AA+KL  +  E    YV+L NIY  SG+L+  A++ + ++ KG+R  P CS
Sbjct: 654 HHDSILAETAAKKLMELNVEDSGGYVLLANIYAESGELENVADMRKLMKVKGIRKSPGCS 713

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG-YVPEEKTLLPDVDEQEQRVL 632
           WIEV  + HVF   + SH Q  E+Y K++ MM +I   G YV         +     R  
Sbjct: 714 WIEVDNRVHVFTVDETSHPQINEVYVKLEEMMKKIEDTGRYV--------SIVSCAHRSQ 765

Query: 633 SYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHF 692
            YHSEKLA AFGL++   W P+Q+ ++ R+C DCH  IKL+++VT RE+++RD  RFHHF
Sbjct: 766 KYHSEKLAFAFGLLSLPPWMPIQVTKNLRVCNDCHLVIKLLSLVTSRELIMRDGFRFHHF 825

Query: 693 KDGMCSCGDYW 703
           KDG CSC DYW
Sbjct: 826 KDGFCSCRDYW 836



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/487 (23%), Positives = 208/487 (42%), Gaps = 75/487 (15%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           +++ + ++ +G +  L++ N +L M+  CGM+ DA R+F E    N+ + N ++    DS
Sbjct: 24  RKLHAQLILSGLDASLFLLNNLLHMYSNCGMVDDAFRVFREANHANIFTWNTMLHAFFDS 83

Query: 210 GDYLEAFLLFLDL---------W----------------------------EEFSDCGSR 232
           G   EA  LF ++         W                             +  +C   
Sbjct: 84  GRMREAENLFDEMPHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDSNHDIQNCDPF 143

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE--------- 283
           ++   ++A   L       QLH+  +K+  G    +  +L+DMY KCG+I          
Sbjct: 144 SYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAITLAETVFLNI 203

Query: 284 ----------------------DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
                                 +A  VF  M E+  V WNT+I+ ++ +G+    L  + 
Sbjct: 204 ESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRCLSTFV 263

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
           EM + G K +  T+  ++  C  ++ L+     HA ++R    LD    S L+D Y+K G
Sbjct: 264 EMCNLGFKPNFMTYGSVLSACASISDLKWGAHLHARILRMEHSLDAFLGSGLIDMYAKCG 323

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            +  AR VF+ +  +N +SW  LI+G    G  ++A+ LF QM    +  +  T   +L 
Sbjct: 324 CLALARRVFNSLGEQNQVSWTCLISGVAQFGLRDDALALFNQMRQASVVLDEFTLATILG 383

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
            CS    +  G E+    +    +         +I +  R G  ++A    R  P + T 
Sbjct: 384 VCSGQNYAATG-ELLHGYAIKSGMDSFVPVGNAIITMYARCGDTEKASLAFRSMPLRDTI 442

Query: 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRT 560
           + W A++TA   NG+++     A + + M PE+ +  +  +L+ Y   G  +E  ++   
Sbjct: 443 S-WTAMITAFSQNGDID----RARQCFDMMPERNVITWNSMLSTYIQHGFSEEGMKLYVL 497

Query: 561 LRRKGLR 567
           +R K ++
Sbjct: 498 MRSKAVK 504



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 119/273 (43%), Gaps = 70/273 (25%)

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED------------------------ 284
           + ++LH+  +  G   ++F+   L+ MYS CG ++D                        
Sbjct: 22  IARKLHAQLILSGLDASLFLLNNLLHMYSNCGMVDDAFRVFREANHANIFTWNTMLHAFF 81

Query: 285 -------AQGVFDEMSE--KTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKM---D 331
                  A+ +FDEM    + +V W T+I+GY  +G    ++  +  M RDS   +   D
Sbjct: 82  DSGRMREAENLFDEMPHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDSNHDIQNCD 141

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE------- 384
            F+++  ++ C  LAS   A Q HA +++   G      ++LVD Y K G I        
Sbjct: 142 PFSYTCTMKACGCLASTRFALQLHAHVIKLHLGAQTCIQNSLVDMYIKCGAITLAETVFL 201

Query: 385 ------------------------DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
                                   +A HVF +M  ++ +SWN LI+ +  +G G   +  
Sbjct: 202 NIESPSLFCWNSMIYGYSQLYGPYEALHVFTRMPERDHVSWNTLISVFSQYGHGIRCLST 261

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
           F +M   G +PN +T+ +VLSAC  + +S+  W
Sbjct: 262 FVEMCNLGFKPNFMTYGSVLSAC--ASISDLKW 292



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 5/133 (3%)

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
           A++ HA L+  G    +   + L+  YS  G ++DA  VF +    N+ +WN ++  + +
Sbjct: 23  ARKLHAQLILSGLDASLFLLNNLLHMYSNCGMVDDAFRVFREANHANIFTWNTMLHAFFD 82

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD--HKIKP- 467
            GR  EA  LF++M    +  + V++  ++S   ++GL     + F SM RD  H I+  
Sbjct: 83  SGRMREAENLFDEM--PHIVRDSVSWTTMISGYCQNGLPAHSIKTFMSMLRDSNHDIQNC 140

Query: 468 RAMHYACMIELLG 480
               Y C ++  G
Sbjct: 141 DPFSYTCTMKACG 153


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 194/546 (35%), Positives = 332/546 (60%), Gaps = 13/546 (2%)

Query: 167 MRNRVLLMHVRCGMMIDARRLFDE------MPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           ++ +++ +   C  + +ARR+F++      +PE   V+  +   G   +G   EA LL+ 
Sbjct: 111 LKGKLITLFSVCRRVDEARRVFEDGGEDVDLPESVWVAMGI---GYSRNGYPKEALLLYY 167

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           ++  +F   G+  F+  ++A + L  +  G+ +H+  LK     +  V+ AL+ +YS+ G
Sbjct: 168 EMVCQFGQLGNFAFSMALKACSDLGDLQTGRAVHAQVLKATEDPDQVVNNALLRLYSEDG 227

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
             ++A  VFD M  +  V WN++IAG        EA++ +  M+  G+     T + I+ 
Sbjct: 228 CFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSWVTLTTILP 287

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
           +C R+ +L   K+ HA +V+     D    ++LVD Y+K G ++  R VF+ M  K++ S
Sbjct: 288 VCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTS 347

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           WN LI GY  +GR  EA+E F++M+ +G  P+ +TF+A+LS CS +GL++ G  +F+ M 
Sbjct: 348 WNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMK 407

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
            D+ I P   HYAC++++LGR G + EA  +++  PFK T ++W +LL +CR++GN+ L 
Sbjct: 408 MDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLA 467

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT-LRRKGLRMLPACSWIEVKK 579
           +  A++L+ +EP    NYV+L NIY ++G + E+ +V+R  + ++G+     CSW+++K 
Sbjct: 468 EAVAKRLFELEPNNAGNYVMLSNIYANAG-MWESVKVVREFMEKRGMTKEAGCSWLQIKS 526

Query: 580 QPHVFLSGDQSHVQTKEIYRKV-DRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSE 637
           + H F++G  +  +    Y+KV  R+M  + + GYVP+   +L DV E+ + + +  HSE
Sbjct: 527 KIHTFVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHSE 586

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           +LA  F LINT+   P++I ++ R+C DCH+ +K ++ VTGR IV+RD +RFHHFKDG+C
Sbjct: 587 RLATMFALINTASGMPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFHHFKDGVC 646

Query: 698 SCGDYW 703
           SC DYW
Sbjct: 647 SCKDYW 652


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/591 (34%), Positives = 341/591 (57%), Gaps = 31/591 (5%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           + I +V  + + ++  G   D +M   +L    +C  +  A R+F      N+     +I
Sbjct: 60  KHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALI 119

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
            G + SG+Y +A  L+  +  +     +   A++++A      +  G+++HS ALK+G  
Sbjct: 120 DGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLS 179

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSE----------------------------- 294
            N  V   ++++Y KCG + DA+ VF+EM E                             
Sbjct: 180 SNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVR 239

Query: 295 -KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
            K TV W  +I G+  +     AL+ +  M+   V+ + FT   ++  C++L +LE  + 
Sbjct: 240 RKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRW 299

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            H+ + +    L++   +AL++ YS+ G I++A+ VFD+M  ++VI++N +I+G   +G+
Sbjct: 300 VHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGK 359

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
             +A+ELF  M+   +RP +VTF+ VL+ACS  GL + G++IF SM+RD+ ++P+  HY 
Sbjct: 360 SRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYG 419

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533
           CM++LLGR G L+EA+ LIR         M   LL+AC+++ NLELG+  A+ L      
Sbjct: 420 CMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQA 479

Query: 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQ 593
               YV+L ++Y SSGK KEAA+V   ++  G++  P CS IEV  + H FL GD  H +
Sbjct: 480 DSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPR 539

Query: 594 TKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWT 652
            + IY K++ +   +   GY PE++ +L D+++ E+   L+ HSE+LA+ +GLI+T   T
Sbjct: 540 KERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCT 599

Query: 653 PLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++++++ R+C DCH+AIKLIA +T R++VVRD +RFH+F++G CSCGDYW
Sbjct: 600 VIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 160/340 (47%), Gaps = 65/340 (19%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +++ AC    ++RE + V S  L  G   +  +R R++ ++ +CG + DARR+F+EMPE 
Sbjct: 152 SILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPE- 210

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDL-------WEEFSDCGSR--------------- 232
           ++V+  ++I+   D G   EA  +F  +       W    D   R               
Sbjct: 211 DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQ 270

Query: 233 ---------TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
                    T   ++ A + L  + +G+ +HS   K     N+FV  ALI+MYS+CGSI+
Sbjct: 271 GENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSID 330

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
           +AQ VFDEM ++  + +NT+I+G +++G S +A++L+  M    ++  + TF  ++  C+
Sbjct: 331 EAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACS 390

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
                      H GLV  GF +          F+S            D  +   +  +  
Sbjct: 391 -----------HGGLVDFGFKI----------FHSM---------TRDYGVEPQIEHYGC 420

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           ++   G  GR EEA +L   M    M P+H+    +LSAC
Sbjct: 421 MVDLLGRVGRLEEAYDLIRTM---KMTPDHIMLGTLLSAC 457



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 123/275 (44%), Gaps = 4/275 (1%)

Query: 91  KKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVK 150
           +K +    + I+  V N+    ALE F  ++ E        T   ++SAC  L ++   +
Sbjct: 240 RKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGEN-VRPNEFTIVCVLSACSQLGALEIGR 298

Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG 210
            V SYM     E +L++ N ++ M+ RCG + +A+ +FDEM +R++++ N +I+G+  +G
Sbjct: 299 WVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNG 358

Query: 211 DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVS 269
              +A  LF  +        + TF  ++ A +   L+  G K  HS     G    +   
Sbjct: 359 KSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHY 418

Query: 270 CALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
             ++D+  + G +E+A  +   M      +   T+++   +H   E    +   + D G 
Sbjct: 419 GCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRG- 477

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           + D  T+ ++  +       + A Q  A +   G 
Sbjct: 478 QADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 512


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/509 (39%), Positives = 298/509 (58%), Gaps = 56/509 (11%)

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           GK +H  A++ G  +++FV  AL+DMY+KCG +++A  VFD + EK  V WN ++ GY+ 
Sbjct: 32  GKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQ 91

Query: 310 HGYSEEALDLYYEMR--------------------------------------------- 324
            G  E+AL L+ +MR                                             
Sbjct: 92  IGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREMQHGEANDALEL 151

Query: 325 -------DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF--GLDIVANSALVD 375
                  D  VK + FT S  +  C RLA+L   +Q HA ++R+ F      VAN  L+D
Sbjct: 152 FSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVAN-CLID 210

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            Y+K G I+ AR VFD +  KN +SW +L+ GYG HGRG+EA+E+F++M   G++P+ VT
Sbjct: 211 MYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVT 270

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
            L VL ACS SG+ ++G E F SMS++  + P   HYACM++LLGR G L+EA  LI G 
Sbjct: 271 LLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGM 330

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
             + +  +W ALL+ CR++ N+ELG+ AA++L  +  E   +Y +L NIY ++ + K+ A
Sbjct: 331 QMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSENDGSYTLLSNIYANARRWKDVA 390

Query: 556 EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
            V   ++  G+R  P CSW++ KK    F   D++H Q+K+IY  +  +   I   GYVP
Sbjct: 391 RVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQSKQIYEILRSLTQRIKVLGYVP 450

Query: 616 EEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
           E    L DVD++E+  L + HSEKLA+A+G++ ++   P++I ++ R+C DCHNAI  I+
Sbjct: 451 ETSFALHDVDDEEKVDLLFEHSEKLALAYGILISAPGAPIRITKNLRVCGDCHNAITYIS 510

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           M+   EI++RD+SRFHHFK G CSC  YW
Sbjct: 511 MIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/365 (24%), Positives = 165/365 (45%), Gaps = 94/365 (25%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           ++ AC  + +    K V    + +G   DL++ N ++ M+ +CGM+ +A ++FD + E++
Sbjct: 19  VLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEKD 78

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA------------- 242
           +VS N ++ G    G + +A  LF  + EE  +    +++ +I A A             
Sbjct: 79  VVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFR 138

Query: 243 ---------GLELIS------------------------------VGKQLHSCALKMGFG 263
                     LEL S                              +G+Q+H+  L+  F 
Sbjct: 139 EMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHFD 198

Query: 264 DN-VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
              ++V+  LIDMY+K G I+ A+ VFD + +K  V W +++ GY +HG  +EAL+++ E
Sbjct: 199 SAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDE 258

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS---- 378
           MR  G++ D  T  +++  C+           H+G++  G           ++F++    
Sbjct: 259 MRRVGLQPDGVTLLVVLYACS-----------HSGMIDQG-----------IEFFNSMSK 296

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
           ++G I    H            +  ++   G  GR  EA+EL E M    M P+ + ++A
Sbjct: 297 EFGVIPGQEH------------YACMVDLLGRAGRLNEAMELIEGM---QMEPSSIVWVA 341

Query: 439 VLSAC 443
           +LS C
Sbjct: 342 LLSGC 346



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 133/280 (47%), Gaps = 31/280 (11%)

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
           ++ D  ++ D  +   ++  C  + +  H K  H   VR G   D+   +ALVD Y+K G
Sbjct: 3   KLGDIDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCG 62

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            +++A  VFD++  K+V+SWNA++ GY   GR E+A+ LFE+M    +  N V++ AV++
Sbjct: 63  MVDEASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIA 122

Query: 442 ACSRSGLSERGWEIFQSMS----------------RDHKIKPRAMHYACMIELLGREGLL 485
           A ++ GL     ++F+ M                 +D  +KP     +C +    R   L
Sbjct: 123 AFAQRGLGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAAL 182

Query: 486 ---DEAFALIRGAPFKTTKNMWA-ALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
               +  A I    F +     A  L+     +G++++ +F  + L   + +   ++  L
Sbjct: 183 RLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNL---KQKNFVSWTSL 239

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLR--------MLPACS 573
           +  Y   G+ KEA EV   +RR GL+        +L ACS
Sbjct: 240 MTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACS 279



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 97/207 (46%), Gaps = 4/207 (1%)

Query: 112 EALELFE-ILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD-LYMRN 169
           +ALELF  + + +G       T    + AC  L ++R  +++ +Y+L   F+   LY+ N
Sbjct: 147 DALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVAN 206

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+ + G +  AR +FD + ++N VS   ++ G    G   EA  +F ++       
Sbjct: 207 CLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQP 266

Query: 230 GSRTFATMIRASAGLELISVGKQ-LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
              T   ++ A +   +I  G +  +S + + G          ++D+  + G + +A  +
Sbjct: 267 DGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMEL 326

Query: 289 FDEMS-EKTTVGWNTIIAGYALHGYSE 314
            + M  E +++ W  +++G  +H   E
Sbjct: 327 IEGMQMEPSSIVWVALLSGCRIHANVE 353


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 203/614 (33%), Positives = 340/614 (55%), Gaps = 32/614 (5%)

Query: 122 FEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMM 181
            E G      TY  L+       +++  + +  +++  GF  +++++N ++ ++   G +
Sbjct: 111 LERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEV 170

Query: 182 IDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRAS 241
             AR +FD   + ++V+ N++I+G   S  + E+  LF ++        S T  +++ A 
Sbjct: 171 SVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSAC 230

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
           + L+ ++VGK++H     +       +  ALIDMY+ CG ++ A G+FD M  +  + W 
Sbjct: 231 SKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWT 290

Query: 302 TIIAGYA--------------------------LHGYSE-----EALDLYYEMRDSGVKM 330
            I+ G+                           + GY +     E L L+ EM+ + +K 
Sbjct: 291 AIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKP 350

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
           D FT   I+  C  L +LE  +   A + ++   +D    +AL+D Y   G +E A  +F
Sbjct: 351 DEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIF 410

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
           + M  ++ ISW A+I G   +G GEEA+++F QML   + P+ VT + VL AC+ SG+ +
Sbjct: 411 NAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVD 470

Query: 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
           +G + F  M+  H I+P   HY CM++LLGR G L EA  +I+  P K    +W +LL A
Sbjct: 471 KGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGA 530

Query: 511 CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLP 570
           CRV+ + E+ + AA+++  +EPE  + YV+L NIY +  + ++  EV + +  +G++  P
Sbjct: 531 CRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTP 590

Query: 571 ACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR 630
            CS IE+    H F++GDQ H Q+KEIY K+D M +++   GY P+   +  D+ E+E+ 
Sbjct: 591 GCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKE 650

Query: 631 VLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRF 689
              Y HSEKLA+AFGLI++     ++IV++ R+C DCH   KL++ V  RE++VRD +RF
Sbjct: 651 SAVYRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRF 710

Query: 690 HHFKDGMCSCGDYW 703
           HHF+ G CSC DYW
Sbjct: 711 HHFRHGSCSCKDYW 724



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 126/501 (25%), Positives = 222/501 (44%), Gaps = 77/501 (15%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR--CGMMIDARRLFDEMP 192
           +LI  C   +S+ ++K++ S  + TG   +  +  +++    +   G M  AR +FD MP
Sbjct: 24  SLIKTC---KSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMP 80

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
             N    N +I G    G    A  ++ ++ E        T+  +++       +  G++
Sbjct: 81  GPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRE 140

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LH   +K+GF  NVFV  ALI +YS  G +  A+GVFD  S+   V WN +I+GY     
Sbjct: 141 LHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQ 200

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH----------------- 355
            +E++ L+ EM    V     T   ++  C++L  L   K+ H                 
Sbjct: 201 FDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENA 260

Query: 356 -------AGLVRHGFGL-------DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
                   G +    G+       D+++ +A+V  ++  G++  AR+ FDKM  ++ +SW
Sbjct: 261 LIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSW 320

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG-W------- 453
            A+I GY    R +E + LF +M    ++P+  T +++L+AC+  G  E G W       
Sbjct: 321 TAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAHLGALELGEWIKAYIDK 380

Query: 454 ---------------------------EIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
                                       IF +M    KI   A+ +   I   G E L  
Sbjct: 381 NEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEEAL-- 438

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLN 543
           + F+ +  A     +     +L AC  +G ++ GK    ++   +G+EP  +++Y  +++
Sbjct: 439 DMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEP-NVAHYGCMVD 497

Query: 544 IYNSSGKLKEAAEVIRTLRRK 564
           +   +G LKEA EVI+ +  K
Sbjct: 498 LLGRAGHLKEAHEVIKNMPVK 518



 Score =  132 bits (333), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 162/320 (50%), Gaps = 9/320 (2%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSK--CGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           KQ+HS  +  G   N  V   +I    K   G +E A+ VFD M       WN +I GY+
Sbjct: 36  KQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYS 95

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
             G    A+ +Y EM + GV  D +T+  +++  TR  +++  ++ H  +V+ GF  ++ 
Sbjct: 96  RVGCPNSAVSMYCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVF 155

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             +AL+  YS  G +  AR VFD+    +V++WN +I+GY    + +E+++LF++M    
Sbjct: 156 VQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEMERMR 215

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           + P+ +T ++VLSACS+      G  + + + +D KI+P  +    +I++    G +D A
Sbjct: 216 VLPSSITLVSVLSACSKLKDLNVGKRVHRYV-KDLKIEPVRVLENALIDMYAACGDMDTA 274

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIYNS 547
             +      +   + W A++T     G + L +   +K+    PE+   ++  +++ Y  
Sbjct: 275 LGIFDNMKSRDVIS-WTAIVTGFTNLGQVGLARNYFDKM----PERDFVSWTAMIDGYLQ 329

Query: 548 SGKLKEAAEVIRTLRRKGLR 567
             + KE   + R ++   ++
Sbjct: 330 VNRFKEVLSLFREMQAANIK 349


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 198/541 (36%), Positives = 315/541 (58%), Gaps = 40/541 (7%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D+   N ++    + G+M +ARRLF  MPE+N VS + +++G +  GD   A   F    
Sbjct: 134 DVASWNTMISALAQVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECF---- 189

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
                     +A  +R+                         V    A+I  Y K G +E
Sbjct: 190 ----------YAAPMRS-------------------------VITWTAMITGYMKFGRVE 214

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
            A+ +F EMS +T V WN +IAGY  +G +E+ L L+  M ++GVK +  + + ++  C+
Sbjct: 215 LAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCS 274

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            L++L+  KQ H  + +     D  A ++LV  YSK G ++DA  +F ++  K+V+ WNA
Sbjct: 275 NLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNA 334

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           +I+GY  HG G++A+ LF++M   G++P+ +TF+AVL AC+ +GL + G + F +M RD 
Sbjct: 335 MISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDF 394

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            I+ +  HYACM++LLGR G L EA  LI+  PFK    ++  LL ACR++ NL L +FA
Sbjct: 395 GIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFA 454

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
           A+ L  ++P   + YV L N+Y +  +    A + R+++   +  +P  SWIE+    H 
Sbjct: 455 AKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHG 514

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVA 642
           F S D+ H +   I+ K+  +  ++   GYVP+ + +L DV E+ ++++L +HSEKLA+A
Sbjct: 515 FRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEKLAIA 574

Query: 643 FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           FGL+      P+++ ++ R+C DCH+A K I+ + GREI+VRD +RFHHFKDG CSC DY
Sbjct: 575 FGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDGFCSCRDY 634

Query: 703 W 703
           W
Sbjct: 635 W 635



 Score = 87.0 bits (214), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 153/361 (42%), Gaps = 68/361 (18%)

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH-GYSEEALDLYYE 322
           +NV  S  LI  Y +CG I+ A  VF++M  K+TV WN+I+A +A   G+ E A  L+ +
Sbjct: 39  NNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEK 98

Query: 323 MR---------------------------DSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
           +                            DS    D  +++ +I    ++  +  A++  
Sbjct: 99  IPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLF 158

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDA----------------------------- 386
           + +       + V+ SA+V  Y   G ++ A                             
Sbjct: 159 SAMPEK----NCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVE 214

Query: 387 --RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
               +F +M  + +++WNA+IAGY  +GR E+ + LF  ML  G++PN ++  +VL  CS
Sbjct: 215 LAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCS 274

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
                + G ++ Q + +   +         ++ +  + G L +A+ L    P K     W
Sbjct: 275 NLSALQLGKQVHQLVCK-CPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVV-CW 332

Query: 505 AALLT--ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
            A+++  A    G   L  F   K  G++P+ ++   VLL   N +G +    +   T+R
Sbjct: 333 NAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLAC-NHAGLVDLGVQYFNTMR 391

Query: 563 R 563
           R
Sbjct: 392 R 392



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 20/205 (9%)

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH-GRGEEAVELFEQM 424
           +++A++ L+  Y + G I+ A  VF+ M  K+ ++WN+++A +    G  E A +LFE++
Sbjct: 40  NVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKI 99

Query: 425 LLNGMRPNHVTFLAVLSACSRSGL---SERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
                +PN V++  ++ AC    L     RG+  F SM     +K  A  +  MI  L +
Sbjct: 100 ----PQPNTVSY-NIMLACHWHHLGVHDARGF--FDSMP----LKDVA-SWNTMISALAQ 147

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
            GL+ EA  L    P K   + W+A+++     G+L+    A E  Y      +  +  +
Sbjct: 148 VGLMGEARRLFSAMPEKNCVS-WSAMVSGYVACGDLDA---AVECFYAAPMRSVITWTAM 203

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGL 566
           +  Y   G+++ A  + + +  + L
Sbjct: 204 ITGYMKFGRVELAERLFQEMSMRTL 228



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 89/200 (44%), Gaps = 6/200 (3%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I   V N R  + L LF  +  E G    + +  +++  C  L +++  K+V   +  
Sbjct: 233 AMIAGYVENGRAEDGLRLFRTM-LETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVCK 291

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
                D      ++ M+ +CG + DA  LF ++P +++V  N +I+G    G   +A  L
Sbjct: 292 CPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALRL 351

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV---FVSCALIDM 275
           F ++ +E       TF  ++ A     L+ +G Q  +  ++  FG        +C ++D+
Sbjct: 352 FDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFN-TMRRDFGIETKPEHYAC-MVDL 409

Query: 276 YSKCGSIEDAQGVFDEMSEK 295
             + G + +A  +   M  K
Sbjct: 410 LGRAGKLSEAVDLIKSMPFK 429


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/534 (37%), Positives = 318/534 (59%), Gaps = 5/534 (0%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+ +CG+ +D R++FDEM  ++LV    +I     +    EA +LF  + +E        
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 234 FATMIRASAG-LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
               + ++ G L  +     +H  A +    + + V  +++ M++KCG+ E A+ VFD M
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMM 120

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            E+  + WN++++GY  +G + EAL L+ EMRDS  +    T  +++  C  L      +
Sbjct: 121 MERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGR 180

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGN 410
           + H  +V     +D   ++AL+D Y+K G +E A  +F+ +    +N  SWN LI+GYG 
Sbjct: 181 KFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGM 240

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           HG G+EA+ELF +M   G+ PNH TF ++LSACS +GL + G + F  M R   +     
Sbjct: 241 HGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKR-LSVTLEDK 299

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           H+AC++++LGR GLL EAF LI+  P   +  +W ALL AC+++GN+ELGK AA  L  +
Sbjct: 300 HHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQL 359

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           EP     YV++ NIY +S K KE  ++ + ++ KGL+   A S IE  K    F + DQ 
Sbjct: 360 EPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTADQE 419

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTS 649
           +    E+Y+K++ + +E+   GYVP+    L DV+E++ +R+L+YHSEKLAVAFG++   
Sbjct: 420 NPYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVLKID 479

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
               +++ ++ R+C DCH+A K I+ +  R+I+VRDA+RFHHF+ G CSC DYW
Sbjct: 480 PGMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 183/368 (49%), Gaps = 10/368 (2%)

Query: 108 KRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
           ++  EAL LF+ ++ E G    S    ++ SA   L  ++    V  Y        +L +
Sbjct: 37  EKPEEALILFKKMQQEEGLLADSIAVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCV 96

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            N +L MH +CG    AR +FD M ER+++S N +++G   +G   EA LLF ++ +  S
Sbjct: 97  GNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLSGYTQNGQATEALLLFDEMRD--S 154

Query: 228 DCGSR--TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
           DC     T   M+ A A L    +G++ H   +      +  +S AL+DMY+KCG +E A
Sbjct: 155 DCQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKA 214

Query: 286 QGVFDEM--SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
             +F+ +  +E+    WN +I+GY +HG+ +EAL+L+  M++ GV+ +HFTF+ I+  C+
Sbjct: 215 VDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACS 274

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WN 402
               ++  ++  A + R    L+   ++ +VD   + G +++A  +  +M        W 
Sbjct: 275 HAGLIDEGRKCFAEMKRLSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWG 334

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC-SRSGLSERGWEIFQSMSR 461
           AL+     HG  E        +L   + PNH  +  ++S   + S   +  W++ Q M  
Sbjct: 335 ALLLACKIHGNMELGKTAASNLL--QLEPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKN 392

Query: 462 DHKIKPRA 469
               KP A
Sbjct: 393 KGLKKPAA 400


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 223/611 (36%), Positives = 352/611 (57%), Gaps = 16/611 (2%)

Query: 90  MKKPSAGICSQIEKLVLNKRYREALELFEILE----FEGGFDVGSSTYDALISACIGLRS 145
           M+K S    S I  L  N  + EA+E ++ +       G F + SS     +S+C  L+ 
Sbjct: 96  MEKDSVSWNSMITGLDQNGCFIEAVERYQSMRRHEILPGSFTLISS-----LSSCASLKW 150

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
            +  +++    L  G + ++ + N ++ ++   G + + R++F  MPE + VS N II  
Sbjct: 151 AKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGA 210

Query: 206 MIDSGDYL-EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
           +  S   L EA   FL+           TF++++ A + L    +GKQ+H  ALK    D
Sbjct: 211 LASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKYNIAD 270

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYALHGYSEEALDLYYEM 323
                 ALI  Y KCG ++  + +F  MSE+   V WN++I+GY  +    +ALDL + M
Sbjct: 271 EATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISGYIHNELLAKALDLVWFM 330

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
             +G ++D F ++ ++     +A+LE   + HA  VR     D+V  SALVD YSK GR+
Sbjct: 331 LQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRL 390

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR-PNHVTFLAVLSA 442
           + A   F+ M  +N  SWN++I+GY  HG+GEEA++LF  M L+G   P+HVTF+ VLSA
Sbjct: 391 DYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANMKLDGQTPPDHVTFVGVLSA 450

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
           CS +GL E G++ F+SMS  + + PR  H++CM +LLGR G LD+    I   P K    
Sbjct: 451 CSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGELDKLEDFIDKMPVKPNVL 510

Query: 503 MWAALLTA-CRVNG-NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560
           +W  +L A CR NG   ELGK AAE L+ +EPE   NYV+L N+Y + G+ ++  +  + 
Sbjct: 511 IWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKK 570

Query: 561 LRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTL 620
           ++   ++     SW+ +K   H+F++GD+SH  T  IY+K+  +  ++   GYVP+    
Sbjct: 571 MKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDTDVIYKKLKELNRKMRDAGYVPQTGFA 630

Query: 621 LPDVD-EQEQRVLSYHSEKLAVAFGL-INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTG 678
           L D++ E ++ +LSYHSEKLAVAF L    S   P++I+++ R+C DCH+A K I+ + G
Sbjct: 631 LYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEG 690

Query: 679 REIVVRDASRF 689
           R+I++RD++R+
Sbjct: 691 RQIILRDSNRY 701



 Score =  152 bits (383), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 232/464 (50%), Gaps = 20/464 (4%)

Query: 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISAC--------IGLRSIREVKRVFSY 155
           LV  K   EA +LF  ++     DV   +Y  L+S+         +GL+  REV     +
Sbjct: 4   LVRQKWGEEATKLF--MDMNSMIDVSPESYVILLSSFPEYSLAEQVGLKKGREVH---GH 58

Query: 156 MLSTGFEPDLY-MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLE 214
           +++TG    +  + N ++ M+ +CG + DARR+F  M E++ VS N +I G+  +G ++E
Sbjct: 59  VITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIE 118

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
           A   +  +       GS T  + + + A L+   +G+Q+H  +LK+G   NV VS AL+ 
Sbjct: 119 AVERYQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMT 178

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS-EEALDLYYEMRDSGVKMDHF 333
           +Y++ G + + + +F  M E   V WN+II   A    S  EA+  +     +G K++  
Sbjct: 179 LYAETGYLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRI 238

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           TFS ++   + L+  E  KQ H   +++    +    +AL+  Y K G ++    +F +M
Sbjct: 239 TFSSVLSAVSSLSFGELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRM 298

Query: 394 L-CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
              ++ ++WN++I+GY ++    +A++L   ML  G R +   +  VLSA +     ERG
Sbjct: 299 SERRDDVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERG 358

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACR 512
            E+  + S    ++   +  + ++++  + G LD A       P + + + W ++++   
Sbjct: 359 MEV-HACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYS-WNSMISGYA 416

Query: 513 VNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            +G  E  L  FA  KL G  P     +V +L+  + +G L+E 
Sbjct: 417 RHGQGEEALKLFANMKLDGQTPPDHVTFVGVLSACSHAGLLEEG 460


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/620 (34%), Positives = 340/620 (54%), Gaps = 48/620 (7%)

Query: 132  TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            T  +++  C    +++  K V ++ML  G + D+ + N +L ++++C +   A RLF+ M
Sbjct: 392  TLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELM 451

Query: 192  PERNLVSCNMIIAGMIDSGDYLEAFLLFLDL-------WEEFSD---------------- 228
             E ++VS N++I   + +GD  ++  +F  L       W    D                
Sbjct: 452  NEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLY 511

Query: 229  ----CGSR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
                CG+     TF+  +  ++ L  + +G+QLH   LK GF  + F+  +L++MY KCG
Sbjct: 512  CMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCG 571

Query: 281  SIEDAQGVFDEMS----------------EKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
             ++ A  +  ++                 +   V W ++++GY  +G  E+ L  +  M 
Sbjct: 572  RMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMV 631

Query: 325  DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
               V +D  T + II  C     LE  +  HA + + G  +D    S+L+D YSK G ++
Sbjct: 632  RELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLD 691

Query: 385  DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            DA  VF +    N++ W ++I+GY  HG+G  A+ LFE+ML  G+ PN VTFL VL+ACS
Sbjct: 692  DAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACS 751

Query: 445  RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
             +GL E G   F+ M   + I P   H   M++L GR G L +    I         ++W
Sbjct: 752  HAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVW 811

Query: 505  AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
             + L++CR++ N+E+GK+ +E L  + P     YV+L N+  S+ +  EAA V   + ++
Sbjct: 812  KSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQR 871

Query: 565  GLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV 624
            G++  P  SWI++K Q H F+ GD+SH Q  EIY  +D ++  + + GY  + K ++ DV
Sbjct: 872  GVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYSYLDILIGRLKEIGYSFDVKLVMQDV 931

Query: 625  DEQEQRVL-SYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVV 683
            +E++  VL S+HSEKLAV FG+INT++ TP++I+++ RIC DCHN IK  + +  REI+V
Sbjct: 932  EEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIIV 991

Query: 684  RDASRFHHFKDGMCSCGDYW 703
            RD  RFHHFK G CSCGDYW
Sbjct: 992  RDIHRFHHFKHGSCSCGDYW 1011



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 105/444 (23%), Positives = 215/444 (48%), Gaps = 54/444 (12%)

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N +L ++ +   M  A++LFDE+P+RN  +  ++I+G   +G     F LF ++  + + 
Sbjct: 328 NHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGAC 387

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               T +++++  +    + +GK +H+  L+ G   +V +  +++D+Y KC   E A+ +
Sbjct: 388 PNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERL 447

Query: 289 FDEMSE-------------------------------KTTVGWNTIIAGYALHGYSEEAL 317
           F+ M+E                               K  V WNTI+ G    GY   AL
Sbjct: 448 FELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHAL 507

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
           +  Y M + G +    TFS+ + + + L+ +E  +Q H  +++ GF  D    S+LV+ Y
Sbjct: 508 EQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMY 567

Query: 378 SKWGRIEDA----RHVFDKMLCK------------NVISWNALIAGYGNHGRGEEAVELF 421
            K GR++ A    R V   +L K             ++SW ++++GY  +G+ E+ ++ F
Sbjct: 568 CKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTF 627

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR-DHKIKPRAMHYACMIELLG 480
             M+   +  +  T   ++SAC+ +G+ E G  +   + +  H+I   A   + +I++  
Sbjct: 628 RLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRID--AYVGSSLIDMYS 685

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN--LELGKFAAEKLYGMEPEKLSNY 538
           + G LD+A+ + R +  +    MW ++++   ++G     +G F      G+ P +++ +
Sbjct: 686 KSGSLDDAWMVFRQSN-EPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVT-F 743

Query: 539 VVLLNIYNSSGKLKEAAEVIRTLR 562
           + +LN  + +G ++E     R ++
Sbjct: 744 LGVLNACSHAGLIEEGCRYFRMMK 767



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 129/268 (48%), Gaps = 28/268 (10%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           R ALE    +  E G +  + T+   +     L  +   +++   +L  GF+ D ++R+ 
Sbjct: 504 RHALEQLYCM-VECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSS 562

Query: 171 VLLMHVRCGMMIDARRLFDEM----------------PERNLVSCNMIIAGMIDSGDYLE 214
           ++ M+ +CG M  A  +  ++                P+  +VS   +++G + +G Y +
Sbjct: 563 LVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYED 622

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
               F  +  E      RT  T+I A A   ++  G+ +H+   K+G   + +V  +LID
Sbjct: 623 GLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLID 682

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MYSK GS++DA  VF + +E   V W ++I+GYALHG    A+ L+ EM + G+  +  T
Sbjct: 683 MYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVT 742

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHG 362
           F  ++  C+           HAGL+  G
Sbjct: 743 FLGVLNACS-----------HAGLIEEG 759



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 99/172 (57%)

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LH+  +K G    +  +  L+ +Y+K  ++  AQ +FDE+ ++ T  W  +I+G+A  G 
Sbjct: 311 LHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGS 370

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
           SE   +L+ EM+  G   + +T S +++ C+   +L+  K  HA ++R+G  +D+V  ++
Sbjct: 371 SEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNS 430

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
           ++D Y K    E A  +F+ M   +V+SWN +I  Y   G  E+++++F ++
Sbjct: 431 ILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRL 482



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 139/354 (39%), Gaps = 80/354 (22%)

Query: 212 YLEAFLL-FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC 270
           +LE+F+L FL  W + S   +   AT   A      ++VG  +         G  +  S 
Sbjct: 205 FLESFILTFLAEWGDRSQIATIALATHKNAIG----VAVGATI---------GHTICTSL 251

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKT--TVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
           A++      GS+     +  ++S+++  TVG   +  G+++  Y       Y  +     
Sbjct: 252 AVVG-----GSM-----LASKISQRSVATVG-GLLFIGFSISSY------FYPPLWLQSC 294

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
            + HFT S          S       HA  V++G    +   + L+  Y+K   +  A+ 
Sbjct: 295 SLYHFTLS---------NSPPPLGTLHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQK 345

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           +FD++  +N  +W  LI+G+   G  E    LF +M   G  PN  T  +VL  CS    
Sbjct: 346 LFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNN 405

Query: 449 SERGWEIFQSMSR--------------DHKIKPRAMHYA----------------CMIEL 478
            + G  +   M R              D  +K +   YA                 MI  
Sbjct: 406 LQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGA 465

Query: 479 LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG--KFAAEKLYGM 530
             R G ++++  + R  P+K   + W  +     V+G L+ G  + A E+LY M
Sbjct: 466 YLRAGDVEKSLDMFRRLPYKDVVS-WNTI-----VDGLLQCGYERHALEQLYCM 513


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 211/596 (35%), Positives = 345/596 (57%), Gaps = 40/596 (6%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR----- 186
           T+  L+ +C   ++ +E +++  ++L  GF+ DLY+   ++ M+ + G + DA++     
Sbjct: 77  TFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRS 136

Query: 187 --------------------------LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
                                     +FDE+P +++VS N +I+G  ++G+Y +A  LF 
Sbjct: 137 SHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFK 196

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           ++ +        T AT++ A A    I +G+Q+HS     GFG N+ +  ALID+YSKCG
Sbjct: 197 EMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCG 256

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            +E A  + + +S K  + WNT+I GY      +EAL L+ EM  SG   +  T   I+ 
Sbjct: 257 EVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 316

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVAN-----SALVDFYSKWGRIEDARHVFDK-ML 394
            C  L +++  +  H  + +   G+ +V N     ++L+D Y+K G I+ A  V D    
Sbjct: 317 ACAHLGAIDIGRWIHVYIDKKLKGV-VVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAF 375

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
            +++ +WNA+I G+  HGR   A ++F +M  NG+ P+ +TF+ +LSACS SG+ + G  
Sbjct: 376 NRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRN 435

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
           IF+SM +D+ I P+  HY CMI+LLG  GL  EA  +I   P +    +W +LL AC+++
Sbjct: 436 IFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIH 495

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL-RMLPACS 573
           GNLELG+  A+KL  +EPE   +YV+L NIY ++GK  E  ++   L  KG+ + +P CS
Sbjct: 496 GNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCS 555

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVL 632
            IE+    H F+ GD+ H Q +EIY  ++ M + + + G+VP+   +L +++E+ ++  L
Sbjct: 556 SIEIDSVVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGAL 615

Query: 633 SYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
            +HSEKLA+AFGLI+T   T L IV++ R+C +CH A KLI+ +  REI+ RD +R
Sbjct: 616 RHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTR 671



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 124/418 (29%), Positives = 213/418 (50%), Gaps = 41/418 (9%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A  +F+ +PE N +  N++  G   S D + A  L++ +          TF  ++++ A 
Sbjct: 28  AISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAK 87

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV--------------- 288
            +    G+Q+H   LK+GF  +++V  +LI MY++ G +EDAQ V               
Sbjct: 88  SKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTAL 147

Query: 289 ----------------FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332
                           FDE+  K  V WN +I+GYA  G  ++AL+L+ EM  + VK D 
Sbjct: 148 ITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPDE 207

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
            T + ++  C +  S+E  +Q H+ +  HGFG ++   +AL+D YSK G +E A  + + 
Sbjct: 208 STMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELLEG 267

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           +  K+VISWN LI GY +    +EA+ LF++ML +G  PN VT L++L AC+  G  + G
Sbjct: 268 LSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG 327

Query: 453 WEIFQSMSRDHKIKPRAMHYA-----CMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
             I   +  D K+K   +  A      +I++  + G +D A  +   + F  + + W A+
Sbjct: 328 RWIHVYI--DKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAM 385

Query: 508 LTACRVNG--NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           +    ++G  N     F+  +  G+EP+ ++ +V LL+  + SG L     + R++R+
Sbjct: 386 IFGFAMHGRANAAFDIFSRMRKNGIEPDDIT-FVGLLSACSHSGMLDLGRNIFRSMRQ 442



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 161/315 (51%), Gaps = 22/315 (6%)

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A  VF+ + E   + WN +  G+AL      AL LY  M   G+  + FTF  +++ C +
Sbjct: 28  AISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAK 87

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
             + +  +Q H  +++ GF LD+  +++L+  Y++ GR+EDA+ VFD+   ++V+S+ AL
Sbjct: 88  SKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTAL 147

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I GY + G  E A ++F+++ +  +    V++ A++S  + +G  ++  E+F+ M + + 
Sbjct: 148 ITGYASRGYIESAQKMFDEIPIKDV----VSWNAMISGYAETGNYKKALELFKEMMKTN- 202

Query: 465 IKPRAMHYACMIELLGREGLLD---EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           +KP     A ++    + G ++   +  + I    F +   +  AL+      G +E   
Sbjct: 203 VKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVET-- 260

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG--------LRMLPACS 573
            A E L G+  + + ++  L+  Y      KEA  + + + R G        L +LPAC+
Sbjct: 261 -ACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 319

Query: 574 W---IEVKKQPHVFL 585
               I++ +  HV++
Sbjct: 320 HLGAIDIGRWIHVYI 334


>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/506 (37%), Positives = 294/506 (58%), Gaps = 1/506 (0%)

Query: 199 CNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCAL 258
           CN +I    DS  +L +  ++  +W+      S TF T++++ A L    +GK +H C +
Sbjct: 110 CNSMIRCYTDSNKHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCII 169

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
           +MGF  NV+VS AL++MY  C S+ DA+ VFDE+ ++  V WN +I GY  +    + +D
Sbjct: 170 QMGFESNVYVSTALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGYNHNRMFRKVID 229

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378
           ++ EM+ +G K    T   ++  C  L +L   +     +  +   L++   +AL+D Y+
Sbjct: 230 VFREMQIAGAKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYA 289

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
           K G +++A  +F  M  KNV +WN LI+GY  +GRGE A++ F +M++   +P+ VTFL 
Sbjct: 290 KCGVVDEAEKIFKAMRVKNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLG 349

Query: 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK 498
           VL AC   GL   G   F SM  +  ++PR  HY CM++LLGR G LDEA  LI+    +
Sbjct: 350 VLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQ 409

Query: 499 TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVI 558
               +W  LL ACR++GN++LG+FA +KL  +EP    NYV+L N+Y    +  +  EV 
Sbjct: 410 PDPIIWRELLGACRIHGNIQLGEFAIKKLLELEPNNGENYVLLANLYARDQRWDKVGEVR 469

Query: 559 RTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEK 618
             +  + +R +P CS IE+    + F+  +      +E+Y+ +  M  ++   GYV +  
Sbjct: 470 EMMDCRRVRKVPGCSSIEIDNVVYEFVVSNYIKPGFEEVYKLLADMNKKLKLAGYVADTG 529

Query: 619 TLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVT 677
               D++E+E +  L YHSEKLA+AFGL+ +     L+IV++ RIC DCH   K+++ V 
Sbjct: 530 MASYDIEEEEKEHSLMYHSEKLALAFGLLKSPSGLTLRIVKNLRICQDCHGFFKIVSKVY 589

Query: 678 GREIVVRDASRFHHFKDGMCSCGDYW 703
            R+I VRD +RFHHF  G CSC DYW
Sbjct: 590 RRDISVRDRNRFHHFVGGACSCKDYW 615



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 151/318 (47%), Gaps = 35/318 (11%)

Query: 122 FEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMM 181
           ++ G    SST+  ++ +   L      K +   ++  GFE ++Y+   ++ M+  C  +
Sbjct: 134 WKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVSTALVNMYGTCSSV 193

Query: 182 IDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATM 237
            DAR++FDE+P+RN+VS N +I G     ++   F   +D++ E    G++    T   +
Sbjct: 194 SDARQVFDEIPDRNIVSWNALITGY----NHNRMFRKVIDVFREMQIAGAKPVEVTMVGV 249

Query: 238 IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT 297
           + A A L  ++ G+ +           NVFV  ALIDMY+KCG +++A+ +F  M  K  
Sbjct: 250 LLACAHLGALNQGRWIDDYIDHNRLRLNVFVGTALIDMYAKCGVVDEAEKIFKAMRVKNV 309

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
             WN +I+GYA++G  E AL  +  M     K D  TF  ++  C            H G
Sbjct: 310 YTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTFLGVLCAC-----------CHQG 358

Query: 358 LVRHG----------FGL--DIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNAL 404
           LV  G          FGL   I     +VD   + G +++A+ +   M +  + I W  L
Sbjct: 359 LVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMSMQPDPIIWREL 418

Query: 405 IAG---YGNHGRGEEAVE 419
           +     +GN   GE A++
Sbjct: 419 LGACRIHGNIQLGEFAIK 436


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 232/658 (35%), Positives = 336/658 (51%), Gaps = 94/658 (14%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE- 190
           TY  LI AC   RS  E K+V +++L  GF+ D+Y+RN ++     C  M DA R+F+E 
Sbjct: 215 TYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNES 274

Query: 191 ------------------------------MPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
                                         MPER++++ N +I      G  +EA  LF 
Sbjct: 275 SVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFD 334

Query: 221 DL-------WEEFSDC---------GSRTFATM---------------IRASAGLELISV 249
           ++       W     C           RTF  M               + A A L ++++
Sbjct: 335 EMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNM 394

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI--------------------------- 282
           GK +HS +LK+G    + +  ALI MYSKCG I                           
Sbjct: 395 GKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLK 454

Query: 283 ----EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
               ++A+ +FD M EK  V W+++I+GYA +   +E L L+ EM+ SG K D  T   +
Sbjct: 455 CNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSV 514

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           I  C RLA+LE  K  HA + R+G  ++++  + L+D Y K G +E A  VF  M+ K +
Sbjct: 515 ISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGI 574

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
            +WNALI G   +G  E ++++F  M    + PN +TF+ VL AC   GL + G   F S
Sbjct: 575 STWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYS 634

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M  DHKI+P   HY CM++LLGR G L EA  L+   P       W ALL AC+ +G+ E
Sbjct: 635 MIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSE 694

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           +G+    KL  ++P+    +V+L NIY S GK  +  E+   + +  +  +P CS IE  
Sbjct: 695 MGRRVGRKLIELQPDHDGFHVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEAN 754

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSE 637
              H FL+GD++H     I   +  M +++   GY P+   +L DVDE+E +  L  HSE
Sbjct: 755 GVIHEFLAGDKTHPDMDAIEDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSE 814

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDG 695
           KLA+AFGLIN S  TP++I+++ RIC DCH A KLI+    R+IVVRD  RFHHF+ G
Sbjct: 815 KLAIAFGLINISPPTPIRIMKNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQG 872



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 169/368 (45%), Gaps = 36/368 (9%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N+ Y EA+  F  +  + G  V      + +SAC  L  +   K + S  L  G E  + 
Sbjct: 354 NEMYEEAIRTFVGMH-KIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYIN 412

Query: 167 MRNRVLLMHVRCGMMIDARRLFDE-------------------------------MPERN 195
           ++N ++ M+ +CG ++ AR+LFDE                               MPE++
Sbjct: 413 LQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKD 472

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
           +VS + +I+G   +  + E   LF ++          T  ++I A A L  +  GK +H+
Sbjct: 473 VVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHA 532

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
              + G   NV +   LIDMY KCG +E A  VF  M EK    WN +I G A++G  E 
Sbjct: 533 YIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVES 592

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALV 374
           +LD++  M+   V  +  TF  ++  C  +  ++  +     ++  H    ++     +V
Sbjct: 593 SLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMV 652

Query: 375 DFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           D   + G++++A  + ++M +  +V +W AL+     HG  E    +  +++   ++P+H
Sbjct: 653 DLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLI--ELQPDH 710

Query: 434 VTFLAVLS 441
             F  +LS
Sbjct: 711 DGFHVLLS 718



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 179/422 (42%), Gaps = 97/422 (22%)

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
           AF L+  +   +    + T+  +I+A +        KQ+H+  LK+GF  +V+V   LI+
Sbjct: 197 AFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLIN 256

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR---------- 324
            +S C ++ DA  VF+E S   +V WN+I+AGY   G  EEA  +Y++M           
Sbjct: 257 CFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSM 316

Query: 325 -----------------DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD- 366
                            D  ++ D  T+S +I    +    E A +   G+ + G  +D 
Sbjct: 317 IVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDE 376

Query: 367 -------------IVAN---------------------SALVDFYSKWGRIEDARHVFDK 392
                        +V N                     +AL+  YSK G I  AR +FD+
Sbjct: 377 VVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDE 436

Query: 393 -------------------------------MLCKNVISWNALIAGYGNHGRGEEAVELF 421
                                          M  K+V+SW+++I+GY  +   +E + LF
Sbjct: 437 AYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALF 496

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
           ++M ++G +P+  T ++V+SAC+R    E+G  +   + R+  +    +    +I++  +
Sbjct: 497 QEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRN-GLTINVILGTTLIDMYMK 555

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYV 539
            G ++ A  +  G   K     W AL+    +NG +E  L  F+  K   + P +++   
Sbjct: 556 CGCVETALEVFYGMIEKGIST-WNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMG 614

Query: 540 VL 541
           VL
Sbjct: 615 VL 616



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/230 (22%), Positives = 104/230 (45%), Gaps = 3/230 (1%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D+  +K      S I     N  + E L LF+ ++   GF    +T  ++ISAC  L ++
Sbjct: 466 DSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQM-SGFKPDETTLVSVISACARLAAL 524

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
            + K V +Y+   G   ++ +   ++ M+++CG +  A  +F  M E+ + + N +I G+
Sbjct: 525 EQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGL 584

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK-QLHSCALKMGFGDN 265
             +G    +  +F ++ +        TF  ++ A   + L+  G+   +S         N
Sbjct: 585 AMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPN 644

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYSE 314
           V     ++D+  + G +++A+ + + M     V  W  ++     HG SE
Sbjct: 645 VKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSE 694


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 215/636 (33%), Positives = 339/636 (53%), Gaps = 69/636 (10%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR---------- 185
           ++S+C    +    ++V S+++  G    + + N VL M+ +CG    AR          
Sbjct: 169 VLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRS 228

Query: 186 ---------------------RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
                                 +F+ M ER++VS N IIAG   +G    A   F  +  
Sbjct: 229 ESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLT 288

Query: 225 EFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
             S +    T  +++ A A L ++ +GKQ+HS  L+ G   +  +  ALI  Y+K GS+E
Sbjct: 289 ASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVE 348

Query: 284 ---------------------------------DAQGVFDEMSEKTTVGWNTIIAGYALH 310
                                             A+ VFD M+ +  + W  +I GY  +
Sbjct: 349 TARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQN 408

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G ++EA++L+  M  SG + +  T + ++  C  LA L + KQ H   +R      +  +
Sbjct: 409 GQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVS 468

Query: 371 SALVDFYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
           +A++  Y++ G +  AR VFD+ +C  K  ++W ++I     HG GE+A+ LFE+ML  G
Sbjct: 469 NAIITVYARSGSVPLARRVFDQ-ICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVG 527

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           ++P+ VT++ V SAC+ +G  ++G   ++ M  +H I P   HYACM++LL R GLL EA
Sbjct: 528 VKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEA 587

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
              I+  P      +W +LL ACRV  N +L + AAEKL  ++P+    Y  L N+Y++ 
Sbjct: 588 HEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSAC 647

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           G+  +AA + +  + K ++     SW  V+ + HVF + D  H Q   I +K   M  EI
Sbjct: 648 GRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWEEI 707

Query: 609 SKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
            K G+VP+  ++L DVD++ ++ +LS HSEKLA+AFGLI+T + T L+I+++ R+C DCH
Sbjct: 708 KKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCH 767

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            AIK I+ V  REI+VRDA+RFHHF+DG CSC DYW
Sbjct: 768 TAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 137/525 (26%), Positives = 234/525 (44%), Gaps = 105/525 (20%)

Query: 139 ACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVS 198
           A +G     E +R+F  +       + +  N +L M+ + G + DAR +F +MPER+ VS
Sbjct: 73  AGVGRGCFHEARRLFDDIPYA--RRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVS 130

Query: 199 CNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCAL 258
             +++ G+  +G + +A   FLD+  E           ++ + A  E   +G+++HS  +
Sbjct: 131 WTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVI 190

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGV------------------------------ 288
           K+G    V V+ +++ MY KCG  E A+ V                              
Sbjct: 191 KLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALS 250

Query: 289 -FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLA 346
            F+ M E++ V WN IIAGY  +G  + AL  +  M   S ++ D FT + ++  C  L 
Sbjct: 251 MFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLR 310

Query: 347 SLEHAKQAHAGLVRHGF---------------------------------GLDIVANSAL 373
            L+  KQ H+ ++R G                                   L++++ +AL
Sbjct: 311 MLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTAL 370

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           ++ Y K G  + AR VFD M  ++VI+W A+I GY  +G+ +EA+ELF  M+ +G  PN 
Sbjct: 371 LEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNS 430

Query: 434 VTFLAVLSACSRSGLSERGWEIF---------QSMSRDHKI------------------- 465
            T  AVLSAC+       G +I          QS+S  + I                   
Sbjct: 431 HTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQ 490

Query: 466 ---KPRAMHYACMIELLGREGLLDEAFALIRG---APFKTTKNMWAALLTACRVNGNLEL 519
              +   + +  MI  L + GL ++A  L         K  +  +  + +AC   G ++ 
Sbjct: 491 ICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDK 550

Query: 520 GKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           GK   E++   +G+ PE +S+Y  ++++   +G L EA E I+ +
Sbjct: 551 GKRYYEQMLNEHGIVPE-MSHYACMVDLLARAGLLTEAHEFIQRM 594



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 107/431 (24%), Positives = 189/431 (43%), Gaps = 44/431 (10%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           AL+ F  +      +    T  +++SAC  LR ++  K++ SY+L TG      + N ++
Sbjct: 279 ALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALI 338

Query: 173 LMHVRCGMMIDARRL---------------------------------FDEMPERNLVSC 199
             + + G +  ARR+                                 FD M  R++++ 
Sbjct: 339 STYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAW 398

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK 259
             +I G   +G   EA  LF  +     +  S T A ++ A A L  +  GKQ+H  A++
Sbjct: 399 TAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIR 458

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALD 318
                +V VS A+I +Y++ GS+  A+ VFD++   K TV W ++I   A HG  E+A+ 
Sbjct: 459 SLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIV 518

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFY 377
           L+ EM   GVK D  T+  +   CT    ++  K+ +  ++  HG   ++   + +VD  
Sbjct: 519 LFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLL 578

Query: 378 SKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           ++ G + +A     +M +  + + W +L+A        + A EL  + LL+    N   +
Sbjct: 579 ARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLA-ELAAEKLLSIDPDNSGAY 637

Query: 437 LA---VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
            A   V SAC R   + R W++ +  +   +      H    + + G + +L       R
Sbjct: 638 SALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQ----R 693

Query: 494 GAPFKTTKNMW 504
            A  K    MW
Sbjct: 694 DAICKKAAEMW 704



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/308 (24%), Positives = 148/308 (48%), Gaps = 14/308 (4%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           N F   +L+ MY+K G + DA+ VF +M E+  V W  ++ G    G   +A+  + +M 
Sbjct: 96  NAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI-VANSALVDFYSKWGRI 383
             G+    F  + ++  C    +    ++ H+ +++ G    + VANS L   Y K G  
Sbjct: 156 GEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLY-MYGKCGDA 214

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           E AR VF++M  ++  SWNA+++ Y + GR + A+ +FE M    +    V++ A+++  
Sbjct: 215 ETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSI----VSWNAIIAGY 270

Query: 444 SRSGLSERGWEIFQSMSRDHKIKP-----RAMHYACMIELLGREGLLDEAFALIRGAPFK 498
           +++GL +   + F  M     ++P      ++  AC    + + G    ++ L  G P+ 
Sbjct: 271 NQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPY- 329

Query: 499 TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVI 558
            +  +  AL++    +G++E  +   +K    +   +S +  LL  Y   G  K+A EV 
Sbjct: 330 -SSQIMNALISTYAKSGSVETARRIMDKAVVADLNVIS-FTALLEGYVKLGDTKQAREVF 387

Query: 559 RTLRRKGL 566
             +  + +
Sbjct: 388 DVMNNRDV 395


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 193/543 (35%), Positives = 329/543 (60%), Gaps = 9/543 (1%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           EPD    N +L+ ++R   +  A   F++MP +++ S N +I+G   +G   +AF    D
Sbjct: 133 EPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAF----D 188

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           L+    +    +++ MI        +   ++L+     +G   +V V  A++  Y K G 
Sbjct: 189 LFSVMPEKNGVSWSAMISGYVEHGDLEAAEELYK---NVGM-KSVVVETAMLTGYMKFGK 244

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           +E A+ +F  M+ K  V WN++IAGY  +  +E+ L ++  M +S V+ +  + S ++  
Sbjct: 245 VELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLG 304

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C+ L++L   +Q H  + +     D  A ++L+  Y K G ++ A  +F +M  K+VI+W
Sbjct: 305 CSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITW 364

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           NA+I+GY  HG G +A+ LF++M    M+P+ +TF+AV+ AC+ +G  + G + F+SM +
Sbjct: 365 NAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKK 424

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           +  I+ + +HY C+I+LLGR G LDEA +LI+  PF     ++  LL ACR++ NL+L +
Sbjct: 425 EFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAE 484

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
           FAA  L  ++P   + YV L NIY ++ K  + A+V + ++   +  +P  SWIE+K   
Sbjct: 485 FAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVT 544

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLA 640
           H F S D+ H +   I++K++ +  ++   GYVP+ +  L DV+E+ ++++L +HSEKLA
Sbjct: 545 HEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLA 604

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AFGL+ T+  TP+++ ++ R+C DCH AIK I+ +  REI+VRD +RFHHF++G CSCG
Sbjct: 605 IAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCG 664

Query: 701 DYW 703
           DYW
Sbjct: 665 DYW 667



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 101/205 (49%), Gaps = 20/205 (9%)

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN-HGRGEEAVELFEQM 424
           D+V+ +  +  + +   +E AR+VF+KM  +  ++WN +++GY    G+ +EA ELF+++
Sbjct: 72  DVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKI 131

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
                 P+ V++  +L    RS   +     F  M     +K  A  +  +I    + G 
Sbjct: 132 ----PEPDSVSYNIMLVCYLRSYGVKAALAFFNKMP----VKDIA-SWNTLISGFAQNGQ 182

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY---GMEPEKLSNYVVL 541
           + +AF L    P K   + W+A+++    +G+LE    AAE+LY   GM+   +     +
Sbjct: 183 MQKAFDLFSVMPEKNGVS-WSAMISGYVEHGDLE----AAEELYKNVGMKSVVVE--TAM 235

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGL 566
           L  Y   GK++ A  + + +  K L
Sbjct: 236 LTGYMKFGKVELAERIFQRMAVKNL 260



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/197 (22%), Positives = 88/197 (44%), Gaps = 6/197 (3%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N R  + L++F+ +  E        +  +++  C  L ++   +++   +  
Sbjct: 265 SMIAGYVENCRAEDGLKVFKTM-IESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSK 323

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           +    D      ++ M+ +CG +  A +LF EMP +++++ N +I+G    G   +A  L
Sbjct: 324 SPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHL 383

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG---DNVFVSCALIDM 275
           F  +          TF  +I A      + +G Q    ++K  FG     V  +C +ID+
Sbjct: 384 FDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFK-SMKKEFGIEAKPVHYTC-VIDL 441

Query: 276 YSKCGSIEDAQGVFDEM 292
             + G +++A  +  EM
Sbjct: 442 LGRAGRLDEAVSLIKEM 458


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 216/603 (35%), Positives = 330/603 (54%), Gaps = 11/603 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR--EVKRVFSYMLSTGFEPD 164
           N   REALE+F  +  + G      T+ ++  AC    S+R  +VK   + +  TG   D
Sbjct: 208 NGSPREALEIFYRM-LQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHACLDETGLGSD 266

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           + +   ++  + RCG +  AR+ F EMPERN VS   +IA     G  L        L E
Sbjct: 267 VVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQIGHLLAVETFHAMLLE 326

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                 S  FA +     G E + V + + + A ++G   +V +   L+  Y++C   ED
Sbjct: 327 GVVPTRSTLFAAL----EGCEDLRVARLVEAIAQEIGVVTDVAIVTDLVMAYARCDGQED 382

Query: 285 AQGVFD--EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           A  VF   E  E        +IA YA          L+    + G+  D   +   +  C
Sbjct: 383 AIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDAC 442

Query: 343 TRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
             LA+L   +Q HA +        D+   +A+V  Y + G + DAR  FD M  ++ ISW
Sbjct: 443 ASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISW 502

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           NA+++    HGR E+  +LF  ML  G     + FL +LSAC+ +GL + G E F +M+ 
Sbjct: 503 NAMLSASAQHGRVEDCCDLFRAMLQEGFDAERIAFLNLLSACAHAGLVKAGCEHFSAMTG 562

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           DH + P   HY CM++LLGR+G L +A  +++  P       W AL+ ACR+ G+ E G+
Sbjct: 563 DHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGR 622

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
           FAAE++  +  +  + YV L NIY+++G+  +AA V + +   GLR +P  S IE++ + 
Sbjct: 623 FAAERVLELRADHTAAYVALCNIYSAAGRWDDAAAVRKIMADLGLRKIPGVSSIEIRSKV 682

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLA 640
           H F+  D+SH Q++ IY +++R+M  I + GY      +L DV +EQ++++L +HSEKLA
Sbjct: 683 HEFVVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLA 742

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AFG+++T   + L+++++ R+C DCHNA K I+ V GREIVVRD  RFHHFKDG CSCG
Sbjct: 743 IAFGMMSTPQGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKDGACSCG 802

Query: 701 DYW 703
           DYW
Sbjct: 803 DYW 805



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 148/283 (52%), Gaps = 4/283 (1%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D Y+ + ++ M++RCG +  A  +F ++  +++V   ++I+  +  G    A  LF  + 
Sbjct: 61  DGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRIL 120

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
           +E     +  F +++ A +  E ++ G+ +H CA++ G G    V+ AL+ MY +CGS+ 
Sbjct: 121 QEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLR 180

Query: 284 DAQGVFDEMSEK-TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           DA  +F  +      V WN +I   + +G   EAL+++Y M   G+  D  TF  + + C
Sbjct: 181 DANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKAC 240

Query: 343 TRLASL--EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
           +   SL     K  HA L   G G D+V  +ALV+ Y++ G I+ AR  F +M  +N +S
Sbjct: 241 SSSPSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPERNAVS 300

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           W ++IA +   G    AVE F  MLL G+ P   T  A L  C
Sbjct: 301 WTSMIAAFTQIGH-LLAVETFHAMLLEGVVPTRSTLFAALEGC 342



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 138/279 (49%), Gaps = 6/279 (2%)

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
           +++ +L+ MY +CGS+E A  VF +++ K+ V W  +I+ Y   G+S  A+ L++ +   
Sbjct: 63  YLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQE 122

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           G+ +D   F  ++  C+    L   +  H   V  G GL  +  SALV  Y + G + DA
Sbjct: 123 GIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDA 182

Query: 387 RHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
             +F  +    +V+ WNA+I     +G   EA+E+F +ML  G+ P+ VTF++V  ACS 
Sbjct: 183 NALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACS- 241

Query: 446 SGLSERGWEI--FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S  S R  ++  F +   +  +    +    ++    R G +D A       P +   + 
Sbjct: 242 SSPSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEIDCARKFFAEMPERNAVS- 300

Query: 504 WAALLTACRVNGN-LELGKFAAEKLYGMEPEKLSNYVVL 541
           W +++ A    G+ L +  F A  L G+ P + + +  L
Sbjct: 301 WTSMIAAFTQIGHLLAVETFHAMLLEGVVPTRSTLFAAL 339



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 111/458 (24%), Positives = 203/458 (44%), Gaps = 28/458 (6%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           A+ LF  +  + G  + +  + +++SAC     +   + +    +  G      + + ++
Sbjct: 112 AIALFHRI-LQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALV 170

Query: 173 LMHVRCGMMIDARRLFDEMPERNL--VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
            M+ RCG + DA  LF  + ER+L  V  N +I     +G   EA  +F  + +      
Sbjct: 171 SMYGRCGSLRDANALFGHL-ERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPD 229

Query: 231 SRTFATMIRA---SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
             TF ++ +A   S  L    V K  H+C  + G G +V V+ AL++ Y++CG I+ A+ 
Sbjct: 230 LVTFVSVFKACSSSPSLRASQV-KGFHACLDETGLGSDVVVATALVNAYARCGEIDCARK 288

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT--RL 345
            F EM E+  V W ++IA +   G+   A++ ++ M   GV     T    +  C   R+
Sbjct: 289 FFAEMPERNAVSWTSMIAAFTQIGHL-LAVETFHAMLLEGVVPTRSTLFAALEGCEDLRV 347

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN--- 402
           A L  A     G+V      D+   + LV  Y++    EDA  VF     +    W+   
Sbjct: 348 ARLVEAIAQEIGVV-----TDVAIVTDLVMAYARCDGQEDAIRVFSA---REEGEWDAAL 399

Query: 403 --ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
             A+IA Y          +L+   +  G+ P+ + ++  L AC+       G +I   ++
Sbjct: 400 VTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVA 459

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE-- 518
            D ++         ++ + G+ G L +A     G P +   + W A+L+A   +G +E  
Sbjct: 460 ADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEIS-WNAMLSASAQHGRVEDC 518

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
              F A    G + E+++ ++ LL+    +G +K   E
Sbjct: 519 CDLFRAMLQEGFDAERIA-FLNLLSACAHAGLVKAGCE 555


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/527 (36%), Positives = 315/527 (59%), Gaps = 2/527 (0%)

Query: 179 GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMI 238
           G M  A  +F +M E      N ++ G +   +  EA + + ++ E      + T+ T++
Sbjct: 36  GSMDYACSIFRQMDEPGSFZFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLL 95

Query: 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV 298
           +A A L  +  G Q+H+  LK+G  ++VFV  +LI MY KCG I     VF++M+E++  
Sbjct: 96  KACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVA 155

Query: 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGV-KMDHFTFSMIIRICTRLASLEHAKQAHAG 357
            W+ +I  +A  G   + L L  +M + G  + +      ++  CT L +L+  +  H  
Sbjct: 156 SWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGF 215

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           L+R+  GL+++  ++L++ Y K G +     +F KM  KN +S++ +I+G   HG G E 
Sbjct: 216 LLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREG 275

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           + +F +ML  G+ P+ + ++ VL+ACS +GL + G + F  M  +H I+P   HY CM++
Sbjct: 276 LRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVD 335

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
           L+GR G +DEA  LI+  P +    +W +LL+A +V+ NL+ G+ AA++L+ ++ +K S+
Sbjct: 336 LMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASD 395

Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI 597
           YVVL N+Y  + + ++ A     +  KGL   P  S +EVK++ H F+S D  H Q++ +
Sbjct: 396 YVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESV 455

Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQI 656
           Y  + +M  ++   GY P+   +L DVDE+E++  LS HS+KLA+A+ LI+TS  +P++I
Sbjct: 456 YEMLYQMEWQLKFEGYXPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPVRI 515

Query: 657 VQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           V++ R+C DCH   KLI+++  REI VRD  RFHHFKDG CSC DYW
Sbjct: 516 VRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 562



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 168/356 (47%), Gaps = 52/356 (14%)

Query: 251 KQLHSCALKMGF------GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
           KQ H+  LK G         N+  +CAL D     GS++ A  +F +M E  +  +NT++
Sbjct: 5   KQSHARILKXGLFXDSFCASNLVATCALSDW----GSMDYACSIFRQMDEPGSFZFNTMM 60

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
            G+     +EEAL  Y EM + GVK D+FT+  +++ C RL ++E   Q HA +++ G  
Sbjct: 61  RGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLE 120

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D+   ++L+  Y K G I     VF++M  ++V SW+ALI  + + G   + + L   M
Sbjct: 121 NDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDM 180

Query: 425 LLNGM-RPNHVTFLAVLSACSR------------------SGLS---------------- 449
              G  R      ++VLSAC+                   SGL+                
Sbjct: 181 SNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGX 240

Query: 450 -ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
             +G  +FQ M++ +K+    M     +   GREGL    F  +     +    ++  +L
Sbjct: 241 LYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGL--RIFTEMLEQGLEPDDIVYVGVL 298

Query: 509 TACRVNGNLELGK--FAAEKL-YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            AC   G ++ G   F   KL +G+EP  + +Y  ++++   +GK+ EA E+I+++
Sbjct: 299 NACSHAGLVQEGLQCFNRMKLEHGIEP-TIQHYGCMVDLMGRAGKIDEALELIKSM 353



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 147/292 (50%), Gaps = 3/292 (1%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           E G    + TY  L+ AC  L ++ E  +V +++L  G E D++++N ++ M+ +CG + 
Sbjct: 81  ERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIG 140

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE-FSDCGSRTFATMIRAS 241
               +F++M ER++ S + +I      G + +   L  D+  E +         +++ A 
Sbjct: 141 VCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSAC 200

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
             L  + +G+ +H   L+   G NV V  +LI+MY KCG +     +F +M++K  + ++
Sbjct: 201 THLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYS 260

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL-VR 360
            +I+G A+HGY  E L ++ EM + G++ D   +  ++  C+    ++   Q    + + 
Sbjct: 261 VMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLE 320

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNH 411
           HG    I     +VD   + G+I++A  +   M +  N + W +L++    H
Sbjct: 321 HGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVH 372



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/203 (19%), Positives = 95/203 (46%), Gaps = 2/203 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + + L L   +  EG +    S   +++SAC  L ++   + V  ++L      ++ +  
Sbjct: 170 WSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVET 229

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+++CG +     LF +M ++N +S +++I+G+   G   E   +F ++ E+  + 
Sbjct: 230 SLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEP 289

Query: 230 GSRTFATMIRASAGLELISVGKQ-LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               +  ++ A +   L+  G Q  +   L+ G    +     ++D+  + G I++A  +
Sbjct: 290 DDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALEL 349

Query: 289 FDEMS-EKTTVGWNTIIAGYALH 310
              M  E   V W ++++   +H
Sbjct: 350 IKSMPMEPNDVLWRSLLSASKVH 372


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/606 (34%), Positives = 342/606 (56%), Gaps = 2/606 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   V N  + E L+LF  +   G +  G  T+  ++ AC    S +    + S ++ 
Sbjct: 81  SLINGFVNNHLFHETLDLFLSIRKHGLYLHGF-TFPLVLKACTRASSRKLGIDLHSLVVK 139

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF  D+     +L ++   G + DA +LFDE+P+R++V+   + +G   SG + EA  L
Sbjct: 140 CGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDL 199

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F  + E      S     ++ A   +  +  G+ +     +M    N FV   L+++Y+K
Sbjct: 200 FKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAK 259

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG +E A+ VFD M EK  V W+T+I GYA + + +E ++L+ +M    +K D F+    
Sbjct: 260 CGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGF 319

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C  L +L+  +   + + RH F  ++   +AL+D Y+K G +     VF +M  K++
Sbjct: 320 LSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDI 379

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +  NA I+G   +G  + +  +F Q    G+ P+  TFL +L  C  +GL + G   F +
Sbjct: 380 VIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNA 439

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           +S  + +K    HY CM++L GR G+LD+A+ LI   P +    +W ALL+ CR+  + +
Sbjct: 440 ISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQ 499

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           L +   ++L  +EP    NYV L NIY+  G+  EAAEV   + +KG++ +P  SWIE++
Sbjct: 500 LAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELE 559

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSE 637
            + H FL+ D+SH  + +IY K++ +  E+   G+VP  + +  DV+E+E +RVL YHSE
Sbjct: 560 GKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSE 619

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLAVA GLI+T     +++V++ R+C DCH  +KLI+ +T REIVVRD +RFH F +G C
Sbjct: 620 KLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSC 679

Query: 698 SCGDYW 703
           SC DYW
Sbjct: 680 SCNDYW 685



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 152/325 (46%), Gaps = 43/325 (13%)

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           +N++I G+  +    E LDL+  +R  G+ +  FTF ++++ CTR +S +     H+ +V
Sbjct: 79  YNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVV 138

Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVE 419
           + GF  D+ A ++L+  YS  GR+ DA  +FD++  ++V++W AL +GY   GR  EA++
Sbjct: 139 KCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAID 198

Query: 420 LFEQMLLNGMRPNHVTFLAVLSAC-----------------------------------S 444
           LF++M+  G++P+    + VLSAC                                   +
Sbjct: 199 LFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYA 258

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
           + G  E+   +F SM     +    M          +EG+  E F  +     K  +   
Sbjct: 259 KCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGI--ELFLQMLQENLKPDQFSI 316

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV---LLNIYNSSGKLKEAAEVIRTL 561
              L++C   G L+LG++    +     E L+N  +   L+++Y   G +    EV + +
Sbjct: 317 VGFLSSCASLGALDLGEWGISLID--RHEFLTNLFMANALIDMYAKCGAMARGFEVFKEM 374

Query: 562 RRKGLRMLPACSWIEVKKQPHVFLS 586
           + K + ++ A +   + K  HV LS
Sbjct: 375 KEKDIVIMNA-AISGLAKNGHVKLS 398



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/259 (20%), Positives = 107/259 (41%), Gaps = 44/259 (16%)

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           ++ H KQ H  L+ H    D    + L+     + + + +  +F      N+  +N+LI 
Sbjct: 25  TVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLIN 84

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR---DH 463
           G+ N+    E ++LF  +  +G+  +  TF  VL AC+R+   + G ++   + +   +H
Sbjct: 85  GFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNH 144

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL---------------- 507
            +         ++ +    G L++A  L    P ++    W AL                
Sbjct: 145 DVAA----MTSLLSIYSGSGRLNDAHKLFDEIPDRSVVT-WTALFSGYTTSGRHREAIDL 199

Query: 508 -------------------LTACRVNGNLELGKFAAEKLYGMEPEKLSNY-VVLLNIYNS 547
                              L+AC   G+L+ G++  + +  ME +K S     L+N+Y  
Sbjct: 200 FKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAK 259

Query: 548 SGKLKEAAEVIRTLRRKGL 566
            GK+++A  V  ++  K +
Sbjct: 260 CGKMEKARSVFDSMVEKDI 278


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/564 (36%), Positives = 318/564 (56%), Gaps = 4/564 (0%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV--RCGMMIDARRLFDEMPERNLVSCNM 201
           +S+ E K+V +++L  G   D +  + ++      R G M  A  +F ++ E      N 
Sbjct: 42  KSMEEFKQVHAHILKLGLFYDSFCGSNLVASCALSRWGSMEYACSIFSQIEEPGSFEYNT 101

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           +I G ++S D  EA LL++++ E   +  + T+  +++A + L  +  G Q+H+   K G
Sbjct: 102 MIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAG 161

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
              +VFV   LI MY KCG+IE A  VF++M EK+   W++II  +A      E L L  
Sbjct: 162 LEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLG 221

Query: 322 EMRDSGV-KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380
           +M   G  + +       +  CT L S    +  H  L+R+   L++V  ++L+D Y K 
Sbjct: 222 DMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKC 281

Query: 381 GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
           G +E    VF  M  KN  S+  +IAG   HGRG EAV +F  ML  G+ P+ V ++ VL
Sbjct: 282 GSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVL 341

Query: 441 SACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTT 500
           SACS +GL   G + F  M  +H IKP   HY CM++L+GR G+L EA+ LI+  P K  
Sbjct: 342 SACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEAYDLIKSMPIKPN 401

Query: 501 KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560
             +W +LL+AC+V+ NLE+G+ AAE ++ +      +Y+VL N+Y  + K    A +   
Sbjct: 402 DVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPGDYLVLANMYARAKKWANVARIRTE 461

Query: 561 LRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTL 620
           +  K L   P  S +E  +  + F+S D+S    + IY  + +M  ++   GY P+   +
Sbjct: 462 MAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICETIYDMIQQMEWQLKFEGYTPDMSQV 521

Query: 621 LPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGR 679
           L DVDE E+R  L +HS+KLA+AF LI TS+ +P++I ++ R+C DCH   K I+++  R
Sbjct: 522 LLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIRISRNLRMCNDCHTYTKFISVIYER 581

Query: 680 EIVVRDASRFHHFKDGMCSCGDYW 703
           EI VRD +RFHHFKDG CSC DYW
Sbjct: 582 EITVRDRNRFHHFKDGTCSCKDYW 605



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 91/357 (25%), Positives = 169/357 (47%), Gaps = 35/357 (9%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL L+ +   E G +  + TY  ++ AC  L +++E  ++ +++   G E D++++N +
Sbjct: 114 EALLLY-VEMLERGIEPDNFTYPFVLKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGL 172

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG +  A  +F++M E+++ S + II        + E  +L  D+  E      
Sbjct: 173 ISMYGKCGAIEHAGVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAE 232

Query: 232 RT-FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
            +   + + A   L   ++G+ +H   L+     NV V  +LIDMY KCGS+E    VF 
Sbjct: 233 ESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQ 292

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            M+ K    +  +IAG A+HG   EA+ ++ +M + G+  D   +  ++  C+       
Sbjct: 293 NMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTPDDVVYVGVLSACS------- 345

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
               HAGLV  G                 + R++     F+ M+   +  +  ++   G 
Sbjct: 346 ----HAGLVNEGLQC--------------FNRMQ-----FEHMIKPTIQHYGCMVDLMGR 382

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
            G  +EA +L + M    ++PN V + ++LSAC      E G    +++ R +K  P
Sbjct: 383 AGMLKEAYDLIKSM---PIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNP 436



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 10/112 (8%)

Query: 339 IRICTRLASLEHAKQAHAGLVRHGF------GLDIVANSALVDFYSKWGRIEDARHVFDK 392
           + +  R  S+E  KQ HA +++ G       G ++VA+ AL    S+WG +E A  +F +
Sbjct: 35  LSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVASCAL----SRWGSMEYACSIFSQ 90

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           +       +N +I G  N    EEA+ L+ +ML  G+ P++ T+  VL ACS
Sbjct: 91  IEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFVLKACS 142



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 91/206 (44%), Gaps = 8/206 (3%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + E L L   +  EG      S   + +SAC  L S    + +   +L    E ++ ++ 
Sbjct: 213 WHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHGILLRNISELNVVVKT 272

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+V+CG +     +F  M  +N  S  ++IAG+   G   EA  +F D+ EE    
Sbjct: 273 SLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGREAVRVFSDMLEEGLTP 332

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC----ALIDMYSKCGSIEDA 285
               +  ++ A +   L++ G Q   C  +M F   +  +      ++D+  + G +++A
Sbjct: 333 DDVVYVGVLSACSHAGLVNEGLQ---CFNRMQFEHMIKPTIQHYGCMVDLMGRAGMLKEA 389

Query: 286 QGVFDEMSEKTT-VGWNTIIAGYALH 310
             +   M  K   V W ++++   +H
Sbjct: 390 YDLIKSMPIKPNDVVWRSLLSACKVH 415


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 203/621 (32%), Positives = 353/621 (56%), Gaps = 40/621 (6%)

Query: 84  SLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGL 143
           SLPD   +K      + +     N    +A++ F+ +  +G  +    T+ ++++AC  +
Sbjct: 194 SLPD---RKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQG-MESNHFTFPSILTACTSI 249

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
            +    ++V   ++ +GF P++Y+++ ++ M+ +CG +  AR + D M   ++V  N +I
Sbjct: 250 SAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMI 309

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
            G +  G   EA +LF  +          T+ +++++ A  + + +G+ +HS  +K GF 
Sbjct: 310 VGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFD 369

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
               VS AL+DMY+K G++  A  VF+++ +K  + W +++ GY  +G+ E+AL L+ +M
Sbjct: 370 ACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDM 429

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
           R + V +D F  + +   C  L  +E  +Q HA  ++   G  + A ++L+  Y+K G +
Sbjct: 430 RTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENSLITMYAKCGCL 489

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           ED                               A+ +F+ M       N +++ A++   
Sbjct: 490 ED-------------------------------AIRVFDSMETR----NVISWTAIIVGY 514

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           +++GL E G   F+SM + + IKP + HYACMI+LLGR G ++EA  L+     +    +
Sbjct: 515 AQNGLVETGQSYFESMEKVYGIKPASDHYACMIDLLGRAGKINEAEHLLNRMDVEPDATI 574

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           W +LL+ACRV+GNLELG+ A + L  +EP     YV+L N+++ +G+ ++AA + R ++ 
Sbjct: 575 WKSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWEDAAHIRRAMKT 634

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
            G+   P  SWIE+K Q H F+S D+SH    EIY K+D MM+ I + G+VP+    L D
Sbjct: 635 MGINKEPGYSWIEMKSQVHTFISEDRSHPLAAEIYSKIDEMMILIKEAGHVPDMNFALRD 694

Query: 624 VDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           +DE+ ++R L+YHSEKLAVAFGL+  +   P++I ++ R+C DCH+A+K I+ +  R I+
Sbjct: 695 MDEEAKERSLAYHSEKLAVAFGLLTVAKGAPIRIFKNLRVCGDCHSAMKYISSIFKRHII 754

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           +RD + FHHF +G CSCGD+W
Sbjct: 755 LRDLNCFHHFIEGKCSCGDFW 775



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/377 (29%), Positives = 200/377 (53%), Gaps = 19/377 (5%)

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
           + E +++F  M       D Y  N ++  +   G +++AR+LF+E P +N ++ + +++G
Sbjct: 53  VDEARKLFDQMPYR----DKYTWNIMISAYANLGNLVEARKLFNETPIKNSITWSSLVSG 108

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
              +G  +E    F  +W +       T  +++RA + L L+  GK +H  A+K+    N
Sbjct: 109 YCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEAN 168

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSE-KTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           +FV+  L+DMYSKC  + +A+ +F  + + K  V W  ++ GYA +G S +A+  + EMR
Sbjct: 169 IFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMR 228

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           + G++ +HFTF  I+  CT +++    +Q H  ++  GFG ++   SALVD Y+K G + 
Sbjct: 229 NQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLA 288

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            AR + D M   +V+ WN++I G   HG  EEA+ LF +M    +R +  T+ +VL    
Sbjct: 289 SARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVL---- 344

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYAC------MIELLGREGLLDEAFALIRGAPFK 498
           +S  S +  +I +S+   H +  +    AC      ++++  ++G L  A  +      K
Sbjct: 345 KSLASCKNLKIGESV---HSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILDK 401

Query: 499 TTKNMWAALLTACRVNG 515
              + W +L+T    NG
Sbjct: 402 DVIS-WTSLVTGYVHNG 417



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 94/231 (40%), Gaps = 49/231 (21%)

Query: 317 LDLYYEMRDSGVKMD-HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
            ++Y++  +   K + HF   + IR C              G+  +   LD   ++ L+ 
Sbjct: 2   FNIYFQTSNFFTKCNFHFKHPLFIR-CIH------------GIAHYSSNLD---SNQLLS 45

Query: 376 FYSKWGRIEDARHVFDKM-------------------------------LCKNVISWNAL 404
             SK GR+++AR +FD+M                                 KN I+W++L
Sbjct: 46  ELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNSITWSSL 105

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           ++GY  +G   E +  F QM  +G +P+  T  +VL ACS   L   G ++    +   +
Sbjct: 106 VSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTG-KMIHCYAIKIQ 164

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           ++        ++++  +   L EA  L    P +     W A+LT    NG
Sbjct: 165 LEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNG 215


>gi|302765350|ref|XP_002966096.1| hypothetical protein SELMODRAFT_84620 [Selaginella moellendorffii]
 gi|300166910|gb|EFJ33516.1| hypothetical protein SELMODRAFT_84620 [Selaginella moellendorffii]
          Length = 598

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/585 (36%), Positives = 339/585 (57%), Gaps = 16/585 (2%)

Query: 126 FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
           F   +  Y AL+  C   R++ + KRV  ++   G+E + ++ N ++ M+ +C  + DA 
Sbjct: 23  FCSNTEAYAALLRRCANERNLVDGKRVHEHLRRYGYENETFLGNLLVQMYGKCSSIDDAA 82

Query: 186 RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
             FD + +++L S N++IA   ++G    A  +F  +          TF  ++  +AGL+
Sbjct: 83  LAFDSIRKKDLFSWNIMIAAFAENGCLDRAVAVFQLMEPARIKRNRGTFVAVL--AAGLD 140

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
           L   GK++H      G   N  V+ AL+ MY  CGS +DA+ VF+++ +   V WN +I 
Sbjct: 141 L-EQGKKIHDSVHSSGLERNEMVATALLSMYGACGSTDDARQVFEQVPKLDLVCWNAMIT 199

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR------ICTRLASLEHAKQAHAGLV 359
            Y  +     AL++++ +   GVK +  T+   +       + +   SL H + + AGL+
Sbjct: 200 AYVQNDQGRGALEVFHRLEMEGVKCNEVTYLAALDACACLAVQSEGRSL-HKRVSEAGLL 258

Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVE 419
              F    VANS LV+ Y K G +E A  +F+ M  +++ SWN L+  YG++G G+ AV+
Sbjct: 259 LTSFK---VANS-LVNMYGKSGNLEAAEEIFESMPSRDISSWNVLMTVYGHNGLGDLAVD 314

Query: 420 LFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479
            F +  L G  P+ +TFLAVL ACS +GL + G E+  S+  D  I P   HY C+++LL
Sbjct: 315 RFTESCLEGFEPDSITFLAVLQACSHAGLLDTGVELLVSIQEDWGIDPTQYHYLCVVDLL 374

Query: 480 GREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYV 539
           GR G L +A ALI   PF+  +  W +LL  CRVN ++  G+ A ++L  M  E  S YV
Sbjct: 375 GRSGELVKAEALINNMPFEPEEGAWRSLLGGCRVNSDVGRGERATQRLLVM-SEDSSPYV 433

Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYR 599
           ++ NIY S      A  +   +  + ++  P  SWIEV+ + H F + D+ H + +EIY 
Sbjct: 434 LMANIYASIRNFDLAERLRSVMADRNVKKQPGLSWIEVRGRIHTFAANDKLHARKEEIYA 493

Query: 600 KVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQ 658
            +DR+ +E+ + GY P+ +  L DV+E+++ R+L +H EKLA+ FGL++T D +PL +++
Sbjct: 494 GLDRLFVELQREGYRPDTRVALYDVEEEKKVRMLLHHGEKLAIMFGLMSTPDGSPLFVLK 553

Query: 659 SHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + R+C DCH A K+IA +T R+IV+RDASRFHHF++G CSC DYW
Sbjct: 554 NLRVCADCHAATKIIAKITKRKIVMRDASRFHHFENGKCSCCDYW 598



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 171/344 (49%), Gaps = 7/344 (2%)

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           DL +E     +  +A ++R  A    +  GK++H    + G+ +  F+   L+ MY KC 
Sbjct: 17  DLGQERFCSNTEAYAALLRRCANERNLVDGKRVHEHLRRYGYENETFLGNLLVQMYGKCS 76

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           SI+DA   FD + +K    WN +IA +A +G  + A+ ++  M  + +K +  TF   + 
Sbjct: 77  SIDDAALAFDSIRKKDLFSWNIMIAAFAENGCLDRAVAVFQLMEPARIKRNRGTF---VA 133

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
           +      LE  K+ H  +   G   + +  +AL+  Y   G  +DAR VF+++   +++ 
Sbjct: 134 VLAAGLDLEQGKKIHDSVHSSGLERNEMVATALLSMYGACGSTDDARQVFEQVPKLDLVC 193

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           WNA+I  Y  + +G  A+E+F ++ + G++ N VT+LA L AC+   +   G  + + +S
Sbjct: 194 WNAMITAYVQNDQGRGALEVFHRLEMEGVKCNEVTYLAALDACACLAVQSEGRSLHKRVS 253

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN--GNLE 518
               +         ++ + G+ G L+ A  +    P +   + W  L+T    N  G+L 
Sbjct: 254 EAGLLLTSFKVANSLVNMYGKSGNLEAAEEIFESMPSRDISS-WNVLMTVYGHNGLGDLA 312

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           + +F    L G EP+ ++ ++ +L   + +G L    E++ +++
Sbjct: 313 VDRFTESCLEGFEPDSIT-FLAVLQACSHAGLLDTGVELLVSIQ 355



 Score = 39.7 bits (91), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 8/213 (3%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I   V N + R ALE+F  LE E G      TY A + AC  L    E + +   +  
Sbjct: 196 AMITAYVQNDQGRGALEVFHRLEME-GVKCNEVTYLAALDACACLAVQSEGRSLHKRVSE 254

Query: 159 TG-FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCN--MIIAGMIDSGDYLEA 215
            G       + N ++ M+ + G +  A  +F+ MP R++ S N  M + G    GD   A
Sbjct: 255 AGLLLTSFKVANSLVNMYGKSGNLEAAEEIFESMPSRDISSWNVLMTVYGHNGLGDL--A 312

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH-SCALKMGFGDNVFVSCALID 274
              F +   E  +  S TF  +++A +   L+  G +L  S     G     +    ++D
Sbjct: 313 VDRFTESCLEGFEPDSITFLAVLQACSHAGLLDTGVELLVSIQEDWGIDPTQYHYLCVVD 372

Query: 275 MYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAG 306
           +  + G +  A+ + + M  E     W +++ G
Sbjct: 373 LLGRSGELVKAEALINNMPFEPEEGAWRSLLGG 405


>gi|356540347|ref|XP_003538651.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 753

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/555 (34%), Positives = 316/555 (56%), Gaps = 2/555 (0%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           K++ S ++   F  D+ +   +  M+V+CG +  A    ++M  ++ V+C  ++ G   +
Sbjct: 200 KQIHSQLIRIEFAADISIETLISNMYVKCGWLDGAEVATNKMTRKSAVACTGLMVGYTQA 259

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
               +A LLF  +  E  +     F+ +++A A L  +  GKQ+HS  +K+G    V V 
Sbjct: 260 ARNRDALLLFSKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVG 319

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
             L+D Y KC   E A+  F+ + E     W+ +IAGY   G  + AL+++  +R  GV 
Sbjct: 320 TPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGKFDRALEVFKTIRSKGVL 379

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
           ++ F ++ I + C+ ++ L    Q HA  ++ G    +   SA++  YSK G+++ A   
Sbjct: 380 LNSFIYNNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMITMYSKCGKVDYAHQA 439

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449
           F  +   + ++W A+I  +  HG+  EA+ LF++M  +G+RPN VTF+ +L+ACS SGL 
Sbjct: 440 FLAIDKPDTVAWTAIICAHAYHGKASEALRLFKEMQGSGVRPNVVTFIGLLNACSHSGLV 499

Query: 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509
           + G +   SM+  + + P   HY CMI++  R GLL EA  +IR  PF+     W +LL 
Sbjct: 500 KEGKQFLDSMTDKYGVNPTIDHYNCMIDIYSRAGLLLEALEVIRSMPFEPDVMSWKSLLG 559

Query: 510 ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRML 569
            C    NLE+G  AA+ ++ ++P   + YV++ N+Y  +GK  EAA+  + +  + LR  
Sbjct: 560 GCWSRRNLEIGMIAADNIFRLDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAERNLRKE 619

Query: 570 PACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK-HGYVPEEKTLLPDVDEQE 628
            +CSWI VK + H F+ GD+ H QT++IY K+  + +   K    +  E+  L D  E++
Sbjct: 620 VSCSWIIVKGKVHRFVVGDRHHPQTEQIYSKLKELNVSFKKGEERLLNEENALCDFTERK 679

Query: 629 QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
            ++L  HSE+LA+A+GLI T+  TP+ + ++ R C DCH   K +++VTGRE+VVRD +R
Sbjct: 680 DQLLD-HSERLAIAYGLICTAADTPIMVFKNTRSCKDCHEFAKRVSVVTGRELVVRDGNR 738

Query: 689 FHHFKDGMCSCGDYW 703
           FHH   G CSC DYW
Sbjct: 739 FHHINSGECSCRDYW 753



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 134/503 (26%), Positives = 238/503 (47%), Gaps = 44/503 (8%)

Query: 100 QIEKLVL-----NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFS 154
           Q+E L L       + R+  E    ++   G  +   +Y+ L   C  L ++ + K +F 
Sbjct: 46  QVENLHLISLAKQGKLRQVHEFIRNMDI-AGISINPRSYEYLFKMCGTLGALSDGK-LFH 103

Query: 155 YMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLE 214
             L      + ++ N +L M+  C     A R FD++ +R+L S   II+   + G   E
Sbjct: 104 NRLQRMANSNKFIDNCILQMYCDCKSFTAAERFFDKIVDRDLSSWATIISAYTEEGRIDE 163

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
           A  LFL + +         F+T+I + A   ++ +GKQ+HS  +++ F  ++ +   + +
Sbjct: 164 AVGLFLRMLDLGIIPNFSIFSTLIMSFADPSMLDLGKQIHSQLIRIEFAADISIETLISN 223

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MY KCG ++ A+   ++M+ K+ V    ++ GY     + +AL L+ +M   GV++D F 
Sbjct: 224 MYVKCGWLDGAEVATNKMTRKSAVACTGLMVGYTQAARNRDALLLFSKMISEGVELDGFV 283

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
           FS+I++ C  L  L   KQ H+  ++ G   ++   + LVDFY K  R E AR  F+ + 
Sbjct: 284 FSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIH 343

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS---------- 444
             N  SW+ALIAGY   G+ + A+E+F+ +   G+  N   +  +  ACS          
Sbjct: 344 EPNDFSWSALIAGYCQSGKFDRALEVFKTIRSKGVLLNSFIYNNIFQACSAVSDLICGAQ 403

Query: 445 -RSGLSERGWEIFQS--------MSRDHKI-----------KPRAMHYACMIELLGREGL 484
             +   ++G   + S         S+  K+           KP  + +  +I      G 
Sbjct: 404 IHADAIKKGLVAYLSGESAMITMYSKCGKVDYAHQAFLAIDKPDTVAWTAIICAHAYHGK 463

Query: 485 LDEAFALIR---GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNY 538
             EA  L +   G+  +     +  LL AC  +G ++ GK   + +   YG+ P  + +Y
Sbjct: 464 ASEALRLFKEMQGSGVRPNVVTFIGLLNACSHSGLVKEGKQFLDSMTDKYGVNP-TIDHY 522

Query: 539 VVLLNIYNSSGKLKEAAEVIRTL 561
             +++IY+ +G L EA EVIR++
Sbjct: 523 NCMIDIYSRAGLLLEALEVIRSM 545


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/613 (35%), Positives = 331/613 (53%), Gaps = 53/613 (8%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID-ARRLFDEMPERNLVSCNMI 202
           ++ R++K++ +  + TG   D      V+         ID AR +F +MPE N    N I
Sbjct: 30  KTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTI 89

Query: 203 IAGMIDSGD---YLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQLHSCAL 258
           +  + ++ D     EA +LF  +  +     +R TF ++++A A    +  GKQ+H   +
Sbjct: 90  LRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIV 149

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDA--------------------------------- 285
           K GF ++ FV   L+ MY  C  +EDA                                 
Sbjct: 150 KFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNI 209

Query: 286 --------------QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
                         + +FDEM +++ V WN +I+GYA +G+  EA++L+ EM+ S +  +
Sbjct: 210 MIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPN 269

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
           + T   ++    R+ +LE  K  H    ++   +D V  SALVD YSK G I++A  VF+
Sbjct: 270 YVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFE 329

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
            +  +N I+W+A+I  +  HGR E+A+  F  M   G+ PN V ++ +LSACS +GL E 
Sbjct: 330 TLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEE 389

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
           G   F  M +   ++PR  HY CM++LLGR G L+EA  LIR  P +    +W ALL AC
Sbjct: 390 GRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGAC 449

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           +++ NL++G+  AE L  + P    +YV L N+Y S G  +  A V   ++   +R  P 
Sbjct: 450 KMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPG 509

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-R 630
           CSWIE+    H FL  D SH + KEI   +  M +++  +GY P    +  + DEQE+ R
Sbjct: 510 CSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERAR 569

Query: 631 VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFH 690
            L YHSEK+AVAFGLI+T+   PL+IV++ RIC DCH ++KLI+++  R+I+VRD  RFH
Sbjct: 570 ALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFH 629

Query: 691 HFKDGMCSCGDYW 703
            F+ G CSC DYW
Sbjct: 630 QFEHGSCSCMDYW 642



 Score =  132 bits (331), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 168/365 (46%), Gaps = 52/365 (14%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL LF  +  +G       T+ +++ AC     +RE K++   ++  GF  D ++ + +
Sbjct: 104 EALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNL 163

Query: 172 LLMHVRCGMMID-----------------------------------------------A 184
           + M+V C +M D                                               A
Sbjct: 164 VRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSA 223

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           + LFDEMP+R++VS N++I+G   +G ++EA  LF ++     D    T  +++ A A +
Sbjct: 224 KNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARI 283

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             + +GK +H  A K     +  +  AL+DMYSKCGSI++A  VF+ + ++  + W+ II
Sbjct: 284 GALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAITWSAII 343

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGF 363
             +A+HG +E+A+  ++ M  +GV  +   +  I+  C+    +E  +   + +V+  G 
Sbjct: 344 GAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGL 403

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAG---YGNHGRGEEAVE 419
              I     +VD   + G +E+A  +   M +  + + W AL+     + N   GE   E
Sbjct: 404 QPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAE 463

Query: 420 LFEQM 424
              ++
Sbjct: 464 TLMEL 468


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/480 (40%), Positives = 287/480 (59%), Gaps = 30/480 (6%)

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKC----------------------------GSIEDA 285
           H  A+K G   + +V+  ++  YSKC                               E A
Sbjct: 1   HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFESA 60

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
             VF+ M EK  V WN++I G+AL+G   EAL LY  M   GV+ D FT   ++  C  L
Sbjct: 61  YKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAEL 120

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNAL 404
           A+L   ++AH  +V+ G   ++ AN+AL+D Y+K G I +AR +FD+M + +NV+SW +L
Sbjct: 121 ATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSL 180

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I G   +G G+EA+E F+ M   G+ P+ +TF+ VL ACS  G+   G+E F+ M   + 
Sbjct: 181 IVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYD 240

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           I PR  HY CM++LLGR GLL EA+  I+  P +    +W  LL AC ++G+L LG FA 
Sbjct: 241 IVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFAR 300

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
            +L  +EP+   +YV+L N+Y S  +  +  EV RT+  +G+R  P  S +E+    H F
Sbjct: 301 ARLLQLEPKDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEF 360

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAF 643
           + GD++H Q++ IY+ +  M +++   GYVP    +L D++E+E+   L YHSEK+A+AF
Sbjct: 361 VMGDRTHPQSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAIAF 420

Query: 644 GLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            LINT   TP++I+++ R+C DCH AIKLI+ V  R+IVVRD SRFHHF+DG CSC DYW
Sbjct: 421 MLINTLPGTPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 124/243 (51%), Gaps = 25/243 (10%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A ++F+ MPE+++V+ N +I G   +G   EA  L+  +  E  +    T  +++ A A 
Sbjct: 60  AYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAE 119

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNT 302
           L  + +G++ H   +K+G   N+  + AL+D+Y+KCG+I +A+ +FDEM  E+  V W +
Sbjct: 120 LATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTS 179

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I G A++G+ +EAL+ + +M   G+     TF  ++  C+           H G+V  G
Sbjct: 180 LIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACS-----------HCGIVNEG 228

Query: 363 F--------GLDIVAN----SALVDFYSKWGRIEDA-RHVFDKMLCKNVISWNALIAGYG 409
           F          DIV        +VD   + G +++A  ++ D  L  N + W  L+    
Sbjct: 229 FEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACT 288

Query: 410 NHG 412
            HG
Sbjct: 289 IHG 291



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 9/237 (3%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I    LN +  EAL L++ +  EG  +    T  +L+SAC  L ++   +R   YM+ 
Sbjct: 77  SVINGFALNGKPNEALTLYKRMGSEG-VEPDGFTMVSLLSACAELATLVLGRRAHVYMVK 135

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP-ERNLVSCNMIIAGMIDSGDYLEAFL 217
            G   +L+  N +L ++ +CG + +AR++FDEM  ERN+VS   +I G+  +G   EA  
Sbjct: 136 VGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALE 195

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMY 276
            F D+  E       TF  ++ A +   +++ G +       +      +     ++D+ 
Sbjct: 196 HFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMVDLL 255

Query: 277 SKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGY-----SEEALDLYYEMRDSG 327
            + G +++A     +M  +   V W T++    +HG+        A  L  E +DSG
Sbjct: 256 GRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKDSG 312


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 214/604 (35%), Positives = 341/604 (56%), Gaps = 16/604 (2%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL  F  +   G      S    ++SAC     +++ + + S +  +GFE +L + N V
Sbjct: 143 EALRHFRFMLLLG-IKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAV 201

Query: 172 LLMHVRCGMMIDARRLFDEMPE--RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
           + M+ RCG + +AR++FD M E  R++VS N++++  + +    +A  L+  +       
Sbjct: 202 MTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQLRPDKV 261

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              T+ +++ A +  E + +G+ LH   +      NV V  AL+ MY+KCGS  +A+ VF
Sbjct: 262 ---TYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVF 318

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-------SGVKMDHFTFSMIIRIC 342
           D+M +++ + W TII+ Y       EA  L+ +M +         VK D   F  I+  C
Sbjct: 319 DKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNAC 378

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISW 401
             +++LE  K         G   D    +A+V+ Y K G IE+AR +FD +  + +V  W
Sbjct: 379 ADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLW 438

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           NA+IA Y   G+  EA++LF +M + G+RP+  +F+++L ACS +GL ++G   F SM+ 
Sbjct: 439 NAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTT 498

Query: 462 DHKIKPRAM-HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
           +++   R + H+ C+ +LLGR G L EA   +   P K     W +LL ACR + +L+  
Sbjct: 499 EYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRA 558

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
           K  A KL  +EP   + YV L NIY    K    A+V + +  +G++     S IE+ K 
Sbjct: 559 KEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKY 618

Query: 581 PHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKL 639
            H F +GD +H + +EI  ++ ++  ++ + GYVP+ K +L  VDEQE +R+L  HSE+L
Sbjct: 619 MHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERL 678

Query: 640 AVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSC 699
           A+A GLI+T   TPL++ ++ R+C DCH A KLI+ + GR+IVVRD +RFH FKDG CSC
Sbjct: 679 AIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSC 738

Query: 700 GDYW 703
            DYW
Sbjct: 739 QDYW 742



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 116/459 (25%), Positives = 223/459 (48%), Gaps = 27/459 (5%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +    ++ + +E L   E +  + G    + T+   + +C    S+R+  R+   ++ + 
Sbjct: 30  VAAFAISGQSKETLRALERMR-QDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSR 88

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE-RNLVSCNMIIAGMIDSGDYLEA---- 215
            E D  + N +L M+ +CG +  A+R+F +M   RN++S +++       G+  EA    
Sbjct: 89  LEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHF 148

Query: 216 -FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
            F+L L +    S        T++ A +   L+  G+ +HSC    GF   + V+ A++ 
Sbjct: 149 RFMLLLGIKATKS-----AMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVMT 203

Query: 275 MYSKCGSIEDAQGVFDEMSE--KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332
           MY +CG++E+A+ VFD M E  +  V WN +++ Y  +   ++A+ LY  M+   ++ D 
Sbjct: 204 MYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQ---LRPDK 260

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
            T+  ++  C+    +   +  H  +V      +++  +ALV  Y+K G   +AR VFDK
Sbjct: 261 VTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDK 320

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQML---LNG----MRPNHVTFLAVLSACSR 445
           M  +++ISW  +I+ Y       EA  LF+QML    NG    ++P+ + F+ +L+AC+ 
Sbjct: 321 MEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACAD 380

Query: 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWA 505
               E+G  + +  +       +A+  A ++ L G+ G ++EA  +      +    +W 
Sbjct: 381 VSALEQGKMVSEQAASCGLSSDKAVGTA-VVNLYGKCGEIEEARRIFDAVCSRPDVQLWN 439

Query: 506 ALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLL 542
           A++      G     L  F   ++ G+ P+  S   +LL
Sbjct: 440 AMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILL 478



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/429 (25%), Positives = 200/429 (46%), Gaps = 49/429 (11%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+  C    DA+  FD + +RNL S   ++A    SG   E       + ++     + T
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
           F T + +    E +  G ++H   +      +  VS AL++MY KCGS+  A+ VF +M 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 294 E-KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
             +  + W+ +   +ALHG   EAL  +  M   G+K        I+  C+  A ++  +
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGR 180

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM--LCKNVISWNALIAGYGN 410
             H+ +   GF  +++  +A++  Y + G +E+AR VFD M    ++V+SWN +++ Y +
Sbjct: 181 MIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVH 240

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH------- 463
           + RG++A++L+++M L   RP+ VT++++LSACS +     G  + + +  D        
Sbjct: 241 NDRGKDAIQLYQRMQL---RPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIV 297

Query: 464 ----------------------KIKPRA-MHYACMIELLGREGLLDEAFALIR------- 493
                                 K++ R+ + +  +I    R  L+ EA  L +       
Sbjct: 298 GNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEK 357

Query: 494 -GAPFKTTKNMWA--ALLTACRVNGNLELGKFAAEKLY--GMEPEKLSNYVVLLNIYNSS 548
            G+  +   +  A   +L AC     LE GK  +E+    G+  +K     V +N+Y   
Sbjct: 358 NGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAV-VNLYGKC 416

Query: 549 GKLKEAAEV 557
           G+++EA  +
Sbjct: 417 GEIEEARRI 425


>gi|356555295|ref|XP_003545969.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Glycine max]
          Length = 626

 Score =  380 bits (975), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/542 (36%), Positives = 326/542 (60%), Gaps = 2/542 (0%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D ++ ++++  ++  G   DA++LFDEMP ++ +S N +++G    GD      +F  + 
Sbjct: 85  DGFIGDQLVSCYLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFSRIGDLGNCLRVFYTMR 144

Query: 224 EEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
            E + +    T  ++I A A  +    G  LH CA+K+G    V V  A I+MY K G +
Sbjct: 145 YEMAFEWNELTLLSVISACAFAKARDEGWCLHCCAVKLGMELEVKVVNAFINMYGKFGCV 204

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           + A  +F  + E+  V WN+++A +  +G   EA++ +  MR +G+  D  T   +++ C
Sbjct: 205 DSAFKLFWALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRVNGLFPDEATILSLLQAC 264

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
            +L      +  H  +   G   +I   + L++ YSK GR+  +  VF ++   + ++  
Sbjct: 265 EKLPLGRLVEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNVSHKVFAEISKPDKVALT 324

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           A++AGY  HG G+EA+E F+  +  GM+P+HVTF  +LSACS SGL   G   FQ MS  
Sbjct: 325 AMLAGYAMHGHGKEAIEFFKWTVREGMKPDHVTFTHLLSACSHSGLVMDGKYYFQIMSDF 384

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
           ++++P+  HY+CM++LLGR G+L++A+ LI+  P +    +W ALL ACRV  N+ LGK 
Sbjct: 385 YRVQPQLDHYSCMVDLLGRCGMLNDAYRLIKSMPLEPNSGVWGALLGACRVYRNINLGKE 444

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPH 582
           AAE L  + P    NY++L NIY+++G   +A++V   ++ K       CS+IE   + H
Sbjct: 445 AAENLIALNPSDPRNYIMLSNIYSAAGLWSDASKVRALMKTKVFIRNAGCSFIEHGNKIH 504

Query: 583 VFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAV 641
            F+  D SH  + +I+RK++ +M +I + G+V E +++L DVDE+ +  +++ HSEK+A+
Sbjct: 505 RFVVDDYSHPDSDKIHRKLEEIMRKIKEVGFVSETESILHDVDEEVKTDMINKHSEKIAL 564

Query: 642 AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
           AFGL+ ++   PL I+++ RIC DCHN  K ++++  R I++RD+ RFHHF DG+CSC D
Sbjct: 565 AFGLLVSNADMPLVIIKNLRICLDCHNTAKFVSLIEKRTIIIRDSKRFHHFSDGLCSCAD 624

Query: 702 YW 703
           YW
Sbjct: 625 YW 626



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 165/348 (47%), Gaps = 34/348 (9%)

Query: 114 LELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLL 173
           L +F  + +E  F+    T  ++ISAC   ++  E   +    +  G E ++ + N  + 
Sbjct: 137 LRVFYTMRYEMAFEWNELTLLSVISACAFAKARDEGWCLHCCAVKLGMELEVKVVNAFIN 196

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF--LDLWEEFSDCGS 231
           M+ + G +  A +LF  +PE+N+VS N ++A    +G   EA   F  + +   F D   
Sbjct: 197 MYGKFGCVDSAFKLFWALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRVNGLFPD--E 254

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T  ++++A   L L  + + +H      G  +N+ ++  L+++YSK G +  +  VF E
Sbjct: 255 ATILSLLQACEKLPLGRLVEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNVSHKVFAE 314

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           +S+   V    ++AGYA+HG+ +EA++ +      G+K DH TF+ ++  C+        
Sbjct: 315 ISKPDKVALTAMLAGYAMHGHGKEAIEFFKWTVREGMKPDHVTFTHLLSACS-------- 366

Query: 352 KQAHAGLVRHG-FGLDIVAN-----------SALVDFYSKWGRIEDARHVFDKM-LCKNV 398
              H+GLV  G +   I+++           S +VD   + G + DA  +   M L  N 
Sbjct: 367 ---HSGLVMDGKYYFQIMSDFYRVQPQLDHYSCMVDLLGRCGMLNDAYRLIKSMPLEPNS 423

Query: 399 ISWNALIAG---YGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSA 442
             W AL+     Y N   G+EA E    + LN   P N++    + SA
Sbjct: 424 GVWGALLGACRVYRNINLGKEAAE--NLIALNPSDPRNYIMLSNIYSA 469


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/597 (33%), Positives = 339/597 (56%), Gaps = 45/597 (7%)

Query: 112 EALELFEILEFEGGFDVGSS----TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
           E  +LF+ + F G   + +     TY  L  AC   ++++E +++  +++  G   D+++
Sbjct: 110 ENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHI 169

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
           ++  + M+   G + DAR++F    E ++V  N +I G      YL+             
Sbjct: 170 KSAGIQMYASFGRLEDARKMFYS-GESDVVCWNTMIDG------YLK------------- 209

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
            CG      ++ A+ GL      K + S  +             +I+  +K G++ DA+ 
Sbjct: 210 -CG------VLEAAKGLFAQMPVKNIGSWNV-------------MINGLAKGGNLGDARK 249

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           +FDEMSE+  + W++++ GY   G  +EAL+++ +M+    +   F  S ++  C+ + +
Sbjct: 250 LFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGA 309

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           ++  +  HA L R+   LD V  +AL+D Y+K GR++    VF++M  + + +WNA+I G
Sbjct: 310 IDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGG 369

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
              HGR E+A+ELF ++    M+PN +T + VL+AC+ +G  ++G  IFQ+M   + + P
Sbjct: 370 LAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDP 429

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
              HY CM++LLGR GL  EA  LI   P K    +W ALL ACR++GN +L +   + L
Sbjct: 430 ELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKIL 489

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
             +EP+    YV+L NIY   G+  + +++ + ++ +G++ +P  S +++    H F  G
Sbjct: 490 LELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGTVHEFKMG 549

Query: 588 DQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLI 646
           D SH Q KEIYRK+  +   +   G+ P+   +L D+DE+E+   ++YHSEKLA+AFGLI
Sbjct: 550 DGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLI 609

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           NT     + IV++ R+C DCH+A KLI+ +  REI+VRD  R+HHFK+G CSC D+W
Sbjct: 610 NTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 181/419 (43%), Gaps = 82/419 (19%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A ++F  +P  N+   N++I G +++    +A   +  +  + +     T+ T+ +A + 
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSV 144

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
            + +  G+Q+H   +K G G +V +  A I MY+  G +EDA+ +F    E   V WNT+
Sbjct: 145 AQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYS-GESDVVCWNTM 203

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I GY   G  E A  L+ +M    VK                                  
Sbjct: 204 IDGYLKCGVLEAAKGLFAQMP---VK---------------------------------- 226

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             +I + + +++  +K G + DAR +FD+M  ++ ISW++++ GY + GR +EA+E+F+Q
Sbjct: 227 --NIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQ 284

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSER-------------------------------- 451
           M     RP      +VL+ACS  G  ++                                
Sbjct: 285 MQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGR 344

Query: 452 ---GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
              GWE+F+ M         AM     I     + L  E F+ ++    K        +L
Sbjct: 345 LDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDAL--ELFSKLQEGRMKPNGITLVGVL 402

Query: 509 TACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           TAC   G ++ G    + +   YG++PE L +Y  ++++   SG   EA ++I ++  K
Sbjct: 403 TACAHAGFVDKGLRIFQTMREFYGVDPE-LEHYGCMVDLLGRSGLFSEAEDLINSMPMK 460



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 96/215 (44%), Gaps = 3/215 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S ++  +   RY+EALE+F+ ++ E     G     ++++AC  + +I + + V +Y+  
Sbjct: 264 SMVDGYISAGRYKEALEIFQQMQREET-RPGRFILSSVLAACSNIGAIDQGRWVHAYLKR 322

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
              + D  +   +L M+ +CG +     +F+EM ER + + N +I G+   G   +A  L
Sbjct: 323 NSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALEL 382

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM-GFGDNVFVSCALIDMYS 277
           F  L E        T   ++ A A    +  G ++     +  G    +     ++D+  
Sbjct: 383 FSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLG 442

Query: 278 KCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHG 311
           + G   +A+ + + M  K     W  ++    +HG
Sbjct: 443 RSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHG 477


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/561 (33%), Positives = 328/561 (58%), Gaps = 2/561 (0%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           RSI +  ++  Y++ +G      + N ++  + +  +  D+RR F++ P+++  + + II
Sbjct: 29  RSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSSII 88

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
           +    +     +      +             +  ++   L    +GK +H  ++K G+ 
Sbjct: 89  SCFAQNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCLSMKTGYD 148

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
            +VFV  +L+DMY+KCG I  A+ +FDEM  +  V W+ ++ GYA  G +EEAL L+ E 
Sbjct: 149 ADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEA 208

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
               + ++ ++FS +I +C     LE  +Q     ++  F       S+LV  YSK G +
Sbjct: 209 LFENLAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDL 268

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           E A  VFD++  +N+  WNA++     H   ++ +ELF++M L+GM+PN +TFL VL+AC
Sbjct: 269 EGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNAC 328

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S +GL + G   F  M ++ +I+P   HYA ++++LGR G L+EA  ++   P   T+++
Sbjct: 329 SHAGLVDEGKYYFDLM-KESRIEPTDKHYASLVDMLGRAGKLEEALEIVTNMPIDPTESV 387

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           W ALLT+C ++ N EL  FAA+K++ + P     ++ L N Y + G+ ++AA+  + LR 
Sbjct: 388 WGALLTSCTIHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRD 447

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
           +G +     SW+E + + H F +G++ H ++KEIY K+  +  E+ K GYV +   +L +
Sbjct: 448 RGEKKETGLSWVEERNKVHTFAAGERRHERSKEIYEKLAELGEEMEKAGYVADTSYVLRE 507

Query: 624 VD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           VD +++ + + YHSE+LA+AFGLI      P++++++ R+C DCHNAIK +++ T R I+
Sbjct: 508 VDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSICTRRVII 567

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           VRD +RFH F+DG CSC DYW
Sbjct: 568 VRDNNRFHRFEDGKCSCNDYW 588



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/206 (20%), Positives = 86/206 (41%), Gaps = 2/206 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL LF+   FE    V   ++  +IS C     +   +++    + + F+   ++ + +
Sbjct: 200 EALWLFKEALFEN-LAVNDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSL 258

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + ++ +CG +  A ++FDE+P RNL   N ++          +   LF  +         
Sbjct: 259 VSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNF 318

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            TF  ++ A +   L+  GK       +           +L+DM  + G +E+A  +   
Sbjct: 319 ITFLNVLNACSHAGLVDEGKYYFDLMKESRIEPTDKHYASLVDMLGRAGKLEEALEIVTN 378

Query: 292 MS-EKTTVGWNTIIAGYALHGYSEEA 316
           M  + T   W  ++    +H  +E A
Sbjct: 379 MPIDPTESVWGALLTSCTIHKNTELA 404


>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
          Length = 641

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/518 (38%), Positives = 318/518 (61%), Gaps = 1/518 (0%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           ++  G   D    N ++ M+ +CG++  AR+LFDEMP R+LVS N ++     +GD  +A
Sbjct: 73  IIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQNGDSEKA 132

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
            +LF+ + +E   C   T ++++ A A    +   KQLH  ALK     NVFV  AL+D+
Sbjct: 133 LVLFMQMQKEGISCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDV 192

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           Y+KCG ++DA  VF+ M E++ V W++++AGY  +   EEAL L++  +  G++ + FT 
Sbjct: 193 YAKCGLVKDASLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTI 252

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
           S  +  C   A+L   KQ  A L + G G +I   S+L+D Y+K G IE+A  VF  +  
Sbjct: 253 SSALSACAARAALIEGKQVQAVLCKTGIGSNIFVISSLIDMYAKCGIIEEAYIVFSSVEE 312

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           KNV+ WNA+++G+  H R  EA+  FE+M   G+ PN +T+++VL+ACS  GL E+G + 
Sbjct: 313 KNVVLWNAMLSGFSRHVRSLEAMIYFEKMQQMGICPNEITYISVLTACSHLGLVEKGRKY 372

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F  M R H + P  +HY+CM+++LGR GLL EA  LI   PF  T +MW +LL +CR+  
Sbjct: 373 FDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDLIDRMPFDATASMWGSLLASCRIYR 432

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575
           NLE  + AA+ L+ +EP    N+V+L NIY ++ + +E A     L+    +     SWI
Sbjct: 433 NLEXAEVAAKHLFEIEPHNAGNHVLLSNIYAANNRWEEVARARNLLKESKAKKERGKSWI 492

Query: 576 EVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSY 634
           E+K + H F+ G+++H +  EIY K++ ++ E+ K GY  + +  L DV+E ++Q +L +
Sbjct: 493 EIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRH 552

Query: 635 HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKL 672
           HSEKLA+ FG++      P++I+++ RIC DCH+ +KL
Sbjct: 553 HSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKL 590



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 178/345 (51%), Gaps = 9/345 (2%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N    +AL LF  ++ EG       T  +++ AC     + E K++  + L T  + +++
Sbjct: 126 NGDSEKALVLFMQMQKEG-ISCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVF 184

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           +   +L ++ +CG++ DA  +F+ MPER+ V+ + ++AG + +  Y EA +LF       
Sbjct: 185 VGTALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMG 244

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            +    T ++ + A A    +  GKQ+ +   K G G N+FV  +LIDMY+KCG IE+A 
Sbjct: 245 LEHNQFTISSALSACAARAALIEGKQVQAVLCKTGIGSNIFVISSLIDMYAKCGIIEEAY 304

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VF  + EK  V WN +++G++ H  S EA+  + +M+  G+  +  T+  ++  C+ L 
Sbjct: 305 IVFSSVEEKNVVLWNAMLSGFSRHVRSLEAMIYFEKMQQMGICPNEITYISVLTACSHLG 364

Query: 347 SLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WNAL 404
            +E  ++    ++R H    +++  S +VD   + G + +A+ + D+M      S W +L
Sbjct: 365 LVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDLIDRMPFDATASMWGSL 424

Query: 405 IAG---YGNHGRGEEAVE-LFEQMLLNGMRPNHVTFLAVLSACSR 445
           +A    Y N    E A + LFE    N    NHV    + +A +R
Sbjct: 425 LASCRIYRNLEXAEVAAKHLFEIEPHNA--GNHVLLSNIYAANNR 467



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 139/261 (53%), Gaps = 2/261 (0%)

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G   H+  +++G   +   S  L++MYSKCG +E A+ +FDEM  ++ V WNT++  +  
Sbjct: 66  GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQ 125

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +G SE+AL L+ +M+  G+    FT S ++  C     +   KQ H   ++     ++  
Sbjct: 126 NGDSEKALVLFMQMQKEGISCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFV 185

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            +AL+D Y+K G ++DA  VF+ M  ++ ++W++++AGY  +   EEA+ LF +    G+
Sbjct: 186 GTALLDVYAKCGLVKDASLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGL 245

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
             N  T  + LSAC+       G ++ Q++     I       + +I++  + G+++EA+
Sbjct: 246 EHNQFTISSALSACAARAALIEGKQV-QAVLCKTGIGSNIFVISSLIDMYAKCGIIEEAY 304

Query: 490 ALIRGAPFKTTKNMWAALLTA 510
            +      K    +W A+L+ 
Sbjct: 305 IVFSSVEEKNVV-LWNAMLSG 324


>gi|7413540|emb|CAB86020.1| putative protein [Arabidopsis thaliana]
 gi|9758453|dbj|BAB08982.1| selenium-binding protein-like [Arabidopsis thaliana]
          Length = 864

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/555 (36%), Positives = 335/555 (60%), Gaps = 3/555 (0%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           ++  C    ++ E K     ++    E D+ + N ++  + +CG +  AR++FD M ER+
Sbjct: 59  ILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERS 118

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG-KQLH 254
           LVS N +I     +    EA  +FL++  E       T ++++ A  G+   ++  K+LH
Sbjct: 119 LVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSA-CGVNCDALECKKLH 177

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
             ++K     N++V  AL+D+Y+KCG I+DA  VF+ M +K++V W++++AGY  +   E
Sbjct: 178 CLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYE 237

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EAL LY   +   ++ + FT S +I  C+ LA+L   KQ HA + + GFG ++   S+ V
Sbjct: 238 EALLLYRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAV 297

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D Y+K G + ++  +F ++  KN+  WN +I+G+  H R +E + LFE+M  +GM PN V
Sbjct: 298 DMYAKCGSLRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEV 357

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           TF ++LS C  +GL E G   F+ M   + + P  +HY+CM+++LGR GLL EA+ LI+ 
Sbjct: 358 TFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKS 417

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            PF  T ++W +LL +CRV  NLEL + AAEKL+ +EPE   N+V+L NIY ++ + +E 
Sbjct: 418 IPFDPTASIWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEI 477

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
           A+  + LR   ++ +   SWI++K + H F  G+  H + +EI   +D ++++  K GY 
Sbjct: 478 AKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYK 537

Query: 615 PEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLI 673
           P  +  L DV+  +++ +L  HSEKLA+ FGL+   + +P++I+++ RIC DCH  +K  
Sbjct: 538 PSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAA 597

Query: 674 AMVTGREIVVRDASR 688
           +M T R I+VRD +R
Sbjct: 598 SMATRRFIIVRDVNR 612



 Score = 67.0 bits (162), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/222 (21%), Positives = 101/222 (45%), Gaps = 3/222 (1%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           ++   K S    S +   V NK Y EAL L+   +     +    T  ++I AC  L ++
Sbjct: 213 ESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQ-RMSLEQNQFTLSSVICACSNLAAL 271

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
            E K++ + +  +GF  ++++ +  + M+ +CG + ++  +F E+ E+NL   N II+G 
Sbjct: 272 IEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNTIISGF 331

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA-LKMGFGDN 265
                  E  +LF  + ++       TF++++       L+  G++         G   N
Sbjct: 332 AKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTYGLSPN 391

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAG 306
           V     ++D+  + G + +A  +   +  + T   W +++A 
Sbjct: 392 VVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLAS 433


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/603 (35%), Positives = 327/603 (54%), Gaps = 11/603 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR--EVKRVFSYMLSTGFEPD 164
           N   REALE+F  +  + G      T+ ++  AC    S+R  +VK   + +  TG   D
Sbjct: 208 NGSPREALEIFYRM-LQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHTCLDETGLGSD 266

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           + +   ++  + RCG +  AR  F  MPERN VS   +IA     G  L        L E
Sbjct: 267 VVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSMIAAFAQIGHLLAVETFHAMLLE 326

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                 S  FA +     G E +   + + + A ++G   +V +   L+  Y++C   ED
Sbjct: 327 GVVPTRSTLFAAL----EGCEDLHTARLVEAIAQEIGVATDVAIVTDLVMAYARCDGQED 382

Query: 285 AQGVFD--EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           A  VF   E  E        +IA YA          L+    + G+  D   +   +  C
Sbjct: 383 AIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDAC 442

Query: 343 TRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
             LA+L   +Q HA +        D+   +A+V  Y + G + DAR  FD M  ++ ISW
Sbjct: 443 ASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISW 502

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           NA+++    HGR E+  +LF  ML  G     V FL +LSAC+ +GL E G E F +M+ 
Sbjct: 503 NAMLSASAQHGRVEDCCDLFRAMLQEGFDAERVAFLNLLSACAHAGLVEAGCEHFSAMTG 562

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
           DH + P   HY CM++LLGR+G L +A  +++  P       W AL+ ACR+ G+ E G+
Sbjct: 563 DHGVVPATEHYGCMVDLLGRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGR 622

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
           FAAE++  +     + YV L NIY+++G+ ++AA V + +   GLR +P  S IE++ + 
Sbjct: 623 FAAERVLELRANHTAAYVALCNIYSAAGRWEDAAAVRKIMADLGLRKIPGVSSIEIRSKV 682

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLA 640
           H F+  D+SH Q++ IY +++R+M  I + GY      +L DV +EQ++++L +HSEKLA
Sbjct: 683 HEFVVRDRSHPQSEAIYAELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLA 742

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AFG+++T   + L+++++ R+C DCHNA K I+ V GREIVVRD  RFHHFKDG CSCG
Sbjct: 743 IAFGMMSTPQGSTLRVIKNLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKDGACSCG 802

Query: 701 DYW 703
           DYW
Sbjct: 803 DYW 805



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 146/283 (51%), Gaps = 4/283 (1%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D Y+ + ++ M++RCG +  A  +F ++  +++V   ++I+  +  G    A  LF  + 
Sbjct: 61  DGYLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRIL 120

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
           +E     +  F +++ A +  E ++ G+ +H CA++ G G    V+ AL+ MY +CGS+ 
Sbjct: 121 QEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLR 180

Query: 284 DAQGVFDEMSEK-TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           DA  +F  +      V WN +I   + +G   EAL+++Y M   G+  D  TF  + + C
Sbjct: 181 DANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKAC 240

Query: 343 TRLASL--EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
           +   SL     K  H  L   G G D+V  +ALV+ Y++ G I+ AR  F  M  +N +S
Sbjct: 241 SSSPSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPERNAVS 300

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           W ++IA +   G    AVE F  MLL G+ P   T  A L  C
Sbjct: 301 WTSMIAAFAQIGH-LLAVETFHAMLLEGVVPTRSTLFAALEGC 342



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 138/279 (49%), Gaps = 6/279 (2%)

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
           +++ +L+ MY +CGS+E A  VF +++ K+ V W  +I+ Y   G+S  A+ L++ +   
Sbjct: 63  YLASSLVYMYLRCGSLESAIDVFHKIAHKSIVLWTVLISAYVSRGHSAAAIALFHRILQE 122

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           G+ +D   F  ++  C+    L   +  H   V  G GL  +  SALV  Y + G + DA
Sbjct: 123 GIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDA 182

Query: 387 RHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445
             +F  +    +V+ WNA+I     +G   EA+E+F +ML  G+ P+ VTF++V  ACS 
Sbjct: 183 NALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACS- 241

Query: 446 SGLSERGWEI--FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           S  S R  ++  F +   +  +    +    ++    R G +D A       P +   + 
Sbjct: 242 SSPSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEIDCAREFFAAMPERNAVS- 300

Query: 504 WAALLTA-CRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
           W +++ A  ++   L +  F A  L G+ P + + +  L
Sbjct: 301 WTSMIAAFAQIGHLLAVETFHAMLLEGVVPTRSTLFAAL 339



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 108/456 (23%), Positives = 200/456 (43%), Gaps = 24/456 (5%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           A+ LF  +  + G  + +  + +++SAC     +   + +    +  G      + + ++
Sbjct: 112 AIALFHRI-LQEGIALDAIVFVSVLSACSSEEFLAAGRLIHRCAVEAGLGLQEIVASALV 170

Query: 173 LMHVRCGMMIDARRLFDEMPERNL--VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
            M+ RCG + DA  LF  + ER+L  V  N +I     +G   EA  +F  + +      
Sbjct: 171 SMYGRCGSLRDANALFGHL-ERHLDVVLWNAMITANSQNGSPREALEIFYRMLQLGIPPD 229

Query: 231 SRTFATMIRA---SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
             TF ++ +A   S  L    V K  H+C  + G G +V V+ AL++ Y++CG I+ A+ 
Sbjct: 230 LVTFVSVFKACSSSPSLRASQV-KGFHTCLDETGLGSDVVVATALVNAYARCGEIDCARE 288

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
            F  M E+  V W ++IA +A  G+   A++ ++ M   GV     T    +  C     
Sbjct: 289 FFAAMPERNAVSWTSMIAAFAQIGHL-LAVETFHAMLLEGVVPTRSTLFAALEGCE---D 344

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN----- 402
           L  A+   A     G   D+   + LV  Y++    EDA  VF     +    W+     
Sbjct: 345 LHTARLVEAIAQEIGVATDVAIVTDLVMAYARCDGQEDAIRVFSA---REEGEWDAALVT 401

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           A+IA Y          +L+   +  G+ P+ + ++  L AC+       G +I   ++ D
Sbjct: 402 AMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAAD 461

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LG 520
            ++         ++ + G+ G L +A     G P +   + W A+L+A   +G +E    
Sbjct: 462 RRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEIS-WNAMLSASAQHGRVEDCCD 520

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
            F A    G + E+++ ++ LL+    +G ++   E
Sbjct: 521 LFRAMLQEGFDAERVA-FLNLLSACAHAGLVEAGCE 555


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/595 (35%), Positives = 332/595 (55%), Gaps = 23/595 (3%)

Query: 132  TYDALISACIGLRSIREVKRV-FSYMLSTGFEPDLYMRNRVL------------------ 172
            + DAL   C  + S + V  V F+  L+  F PD + + R+L                  
Sbjct: 433  SLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA 492

Query: 173  --LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
               M+ + G M ++RR+  +MP R++V+ N +I G  +  D  +A   F  +  E     
Sbjct: 493  LVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSN 552

Query: 231  SRTFATMIRASA-GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              T  +++ A     +L+  GK LH+  +  GF  +  V  +LI MY+KCG +  +Q +F
Sbjct: 553  YITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLF 612

Query: 290  DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
            + +  +  + WN ++A  A HG+ EE L L  +MR  GV +D F+FS  +    +LA LE
Sbjct: 613  NGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLE 672

Query: 350  HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
              +Q H   V+ GF  D    +A  D YSK G I +   +    + +++ SWN LI+  G
Sbjct: 673  EGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALG 732

Query: 410  NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
             HG  EE    F +ML  G++P HVTF+++L+ACS  GL ++G   +  ++RD  ++P  
Sbjct: 733  RHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAI 792

Query: 470  MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
             H  C+I+LLGR G L EA   I   P K    +W +LL +C+++GNL+ G+ AAE L  
Sbjct: 793  EHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSK 852

Query: 530  MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
            +EPE  S YV+  N++ ++G+ ++   V + +  K ++   ACSW+++K +   F  GD+
Sbjct: 853  LEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDR 912

Query: 590  SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINT 648
            +H QT EIY K++ +   I + GYV +    L D D EQ++  L  HSE+LA+A+ L++T
Sbjct: 913  THPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMST 972

Query: 649  SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             + + ++I ++ RIC DCH+  K ++ V GR IV+RD  RFHHF+ G+CSC DYW
Sbjct: 973  PEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 1027



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/441 (25%), Positives = 215/441 (48%), Gaps = 35/441 (7%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSI-REVKRVFSYMLSTGFEPDLYMR 168
           Y E +E F  +  + G    S    +L++AC    S+ RE  +V  ++  +G   D+Y+ 
Sbjct: 154 YLEGMEFFRKM-CDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVS 212

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
             +L ++   G++  +R++F+EMP+RN+VS   ++ G  D G+  E   ++ D       
Sbjct: 213 TAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDE------ 266

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
                              S+G+Q+    +K G    + V  +LI M    G+++ A  +
Sbjct: 267 -------------------SLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYI 307

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD+MSE+ T+ WN+I A YA +G+ EE+  ++  MR    +++  T S ++ +   +   
Sbjct: 308 FDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQ 367

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
           +  +  H  +V+ GF   +   + L+  Y+  GR  +A  VF +M  K++ISWN+L+A +
Sbjct: 368 KWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASF 427

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
            N GR  +A+ L   M+ +G   N+VTF + L+AC      E+G  I   +     +   
Sbjct: 428 VNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG-RILHGLVVVSGLFYN 486

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT--ACRVNGNLELGKFAAEK 526
            +    ++ + G+ G + E+  ++   P +     W AL+   A   + +  L  F   +
Sbjct: 487 QIIGNALVSMYGKIGEMSESRRVLLQMPRRDVV-AWNALIGGYAEDEDPDKALAAFQTMR 545

Query: 527 LYGMEPEKLSNYVVLLNIYNS 547
           + G+     SNY+ ++++ ++
Sbjct: 546 VEGVS----SNYITVVSVLSA 562



 Score =  150 bits (379), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 157/305 (51%), Gaps = 3/305 (0%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           +++   ++ +G E  L + N ++ M    G +  A  +FD+M ER+ +S N I A    +
Sbjct: 270 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQN 329

Query: 210 GDYLEAFLLFLDLWEEFSD-CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
           G   E+F +F  L   F D   S T +T++     ++    G+ +H   +KMGF   V V
Sbjct: 330 GHIEESFRIF-SLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCV 388

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
              L+ MY+  G   +A  VF +M  K  + WN+++A +   G S +AL L   M  SG 
Sbjct: 389 CNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGK 448

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
            +++ TF+  +  C      E  +  H  +V  G   + +  +ALV  Y K G + ++R 
Sbjct: 449 SVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRR 508

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG- 447
           V  +M  ++V++WNALI GY      ++A+  F+ M + G+  N++T ++VLSAC   G 
Sbjct: 509 VLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGD 568

Query: 448 LSERG 452
           L ERG
Sbjct: 569 LLERG 573



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 124/257 (48%), Gaps = 26/257 (10%)

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N ++ M+ + G +  AR LFD MP RN VS N +++G++  G YLE    F  + +    
Sbjct: 111 NTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIK 170

Query: 229 CGSRTFATMIRASA-GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
             S   A+++ A      +   G Q+H    K G   +V+VS A++ +Y   G +  ++ 
Sbjct: 171 PSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRK 230

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           VF+EM ++  V W +++ GY+  G  EE +D+Y   +D  +                   
Sbjct: 231 VFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIY---KDESL------------------- 268

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
               +Q    +V+ G    +   ++L+      G ++ A ++FD+M  ++ ISWN++ A 
Sbjct: 269 ---GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAA 325

Query: 408 YGNHGRGEEAVELFEQM 424
           Y  +G  EE+  +F  M
Sbjct: 326 YAQNGHIEESFRIFSLM 342



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 163/338 (48%), Gaps = 28/338 (8%)

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           + G+ +H+  +K     +V  +  LI+MY+K G ++ A+ +FD M  +  V WNT+++G 
Sbjct: 89  TTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGI 148

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL-EHAKQAHAGLVRHGFGLD 366
              G   E ++ + +M D G+K   F  + ++  C R  S+     Q H  + + G   D
Sbjct: 149 VRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSD 208

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE---- 422
           +  ++A++  Y  +G +  +R VF++M  +NV+SW +L+ GY + G  EE +++++    
Sbjct: 209 VYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESL 268

Query: 423 ------QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
                 Q++ +G+        +++S     G  +    IF  MS    I   ++  A   
Sbjct: 269 GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAA--- 325

Query: 477 ELLGREGLLDEA---FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533
               + G ++E+   F+L+R    +      + LL+   V G+++  K+    ++G+  +
Sbjct: 326 --YAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLS---VLGHVDHQKW-GRGIHGLVVK 379

Query: 534 KLSNYVV-----LLNIYNSSGKLKEAAEVIRTLRRKGL 566
              + VV     LL +Y  +G+  EA  V + +  K L
Sbjct: 380 MGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDL 417


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 188/473 (39%), Positives = 290/473 (61%), Gaps = 2/473 (0%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC-GSIEDAQGVFDE 291
            F  +++A AGL  +++GK +H   +K GF D++FV   ++ MY  C G +E A+ +FDE
Sbjct: 111 AFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDE 170

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M +   V W  +I GYA  G S  A+ L+ +M+ +GV  D  T   ++  CT L +LE  
Sbjct: 171 MPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELG 230

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K   + + +      +  ++ALVD ++K G ++ A  +F  M  + ++SW ++I G   H
Sbjct: 231 KWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMH 290

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           GRG EAV LFE+M  +GM P  + F+ +LSACS SGL ERG + F  M+R   I P+  H
Sbjct: 291 GRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEH 350

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           Y CM++LL R GL+ EA   +   P +    +W  L++ACRV+G L+LG+  +++L   E
Sbjct: 351 YGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNE 410

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P   SNYV+L NIY      ++ +++   + +KG++ +P  + IE+  + H F+ GD+SH
Sbjct: 411 PMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSH 470

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSD 650
            Q  EI + V+ M  E+ + GY P    +  D+DE+++   LS HSEKLA+AF L+NT  
Sbjct: 471 NQYNEIIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAIAFALLNTPP 530

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            +P++I ++ R+C DCH+A K I+ +  REIV+RD SRFHHF+DG CSCGD+W
Sbjct: 531 GSPIRITKNLRVCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 160/321 (49%), Gaps = 7/321 (2%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC-GMMID 183
           G       +  ++ AC GLR +   K V   ++  GF+ D++++N ++ M+  C G M  
Sbjct: 104 GISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEF 163

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           AR+LFDEMP+ + V+   +I G    G    A  LF  +          T  +++ A   
Sbjct: 164 ARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTD 223

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L  + +GK + S   K      V +S AL+DM++KCG ++ A G+F  MS++T V W ++
Sbjct: 224 LGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSV 283

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I G A+HG   EA+ L+ EM+ SG+  +   F  ++  C+    +E  +Q  + + R  F
Sbjct: 284 IVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQ-F 342

Query: 364 GL--DIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVEL 420
           G+   I     +VD  S+ G + +A    ++M +  N I W  LI+    HG  +    +
Sbjct: 343 GIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESI 402

Query: 421 FEQMLLNGMRPNHVTFLAVLS 441
            +Q++ N   P H +   +LS
Sbjct: 403 SKQLIRN--EPMHESNYVLLS 421



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 155/320 (48%), Gaps = 10/320 (3%)

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG---WNTIIAGYA 308
           QLH+  +K+GF +N  V        S   +I  A  +   + +        ++TII  YA
Sbjct: 25  QLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDARVYDAFLFSTIIRAYA 84

Query: 309 LHGYSEEALDLYYE-MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
               S+     YY  M   G+  + + F  +++ C  L  L   K  H  LV+ GF  DI
Sbjct: 85  ESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDI 144

Query: 368 VANSALVDFYSKW-GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
              + +V  Y    G +E AR +FD+M   + ++W A+I GY   G+   AV LF +M +
Sbjct: 145 FVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQI 204

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
            G+ P+ VT ++VLSAC+  G  E G  I   + ++  +K   +  A ++++  + G +D
Sbjct: 205 AGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNA-LVDMFAKCGDVD 263

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNG-NLE-LGKFAAEKLYGMEPEKLSNYVVLLNI 544
           +A  L R    +T  + W +++    ++G  LE +  F   K  GM PE ++ ++ LL+ 
Sbjct: 264 KALGLFRNMSKRTIVS-WTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIA-FIGLLSA 321

Query: 545 YNSSGKLKEAAEVIRTLRRK 564
            + SG ++   +    + R+
Sbjct: 322 CSHSGLVERGRQYFSEMTRQ 341


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/604 (35%), Positives = 340/604 (56%), Gaps = 16/604 (2%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL  F  +   G      S    ++SAC     +++ + + S +  +GFE +L + N V
Sbjct: 230 EALRHFRFMLLLG-IKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAV 288

Query: 172 LLMHVRCGMMIDARRLFDEMPE--RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
           + M+ RCG + +AR++FD M E  R++VS N++++  + +    +A  L+  +       
Sbjct: 289 MTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQLRADKV 348

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              T+ +++ A +  E + +G+ LH   +      NV V  AL+ MY+KCGS  +A+ VF
Sbjct: 349 ---TYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVF 405

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-------SGVKMDHFTFSMIIRIC 342
           D+M +++ + W TII+ Y       EA  L+ +M +         VK D   F  I+  C
Sbjct: 406 DKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNAC 465

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISW 401
             +++LE  K         G   D    +A+V+ Y K G IE+ R +FD +  + +V  W
Sbjct: 466 ADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLW 525

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           NA+IA Y   G+  EA++LF +M + G+RP+  +F+++L ACS +GL ++G   F SM+ 
Sbjct: 526 NAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTT 585

Query: 462 DHKIKPRAM-HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
           +++   R + H+ C+ +LLGR G L EA   +   P K     W +LL ACR + +L+  
Sbjct: 586 EYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRA 645

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
           K  A KL  +EP   + YV L NIY    K    A+V + +  +G++     S IE+ K 
Sbjct: 646 KEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIEIGKY 705

Query: 581 PHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKL 639
            H F +GD +H + +EI  ++ ++  ++ + GYVP+ K +L  VDEQE +R+L  HSE+L
Sbjct: 706 MHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSHSERL 765

Query: 640 AVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSC 699
           A+A GLI+T   TPL++ ++ R+C DCH A KLI+ + GR+IVVRD +RFH FKDG CSC
Sbjct: 766 AIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDGKCSC 825

Query: 700 GDYW 703
            DYW
Sbjct: 826 QDYW 829



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 168/319 (52%), Gaps = 7/319 (2%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEP-DLYMRNRVLLMHVRCGMMIDARRLF 188
           ++TY  L+  C   +++ E +++ S  +     P +L + N ++ M+  C    DA+  F
Sbjct: 43  NATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDAKAAF 102

Query: 189 DEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS 248
           D + +RNL S   ++A    SG   E       + ++     + TF T + +    E + 
Sbjct: 103 DALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLR 162

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE-KTTVGWNTIIAGY 307
            G ++H   +      +  VS AL++MY KCGS+  A+ VF +M   +  + W+ +   +
Sbjct: 163 DGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAH 222

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           ALHG   EAL  +  M   G+K        I+  C+  A ++  +  H+ +   GF  ++
Sbjct: 223 ALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESEL 282

Query: 368 VANSALVDFYSKWGRIEDARHVFDKM--LCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           +  +A++  Y + G +E+AR VFD M    ++V+SWN +++ Y ++ RG++A++L+++M 
Sbjct: 283 LVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQ 342

Query: 426 LNGMRPNHVTFLAVLSACS 444
           L   R + VT++++LSACS
Sbjct: 343 L---RADKVTYVSLLSACS 358



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 182/420 (43%), Gaps = 46/420 (10%)

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R L      R L  C  +    +D  D   A L   DL ++     + T+A +++  A  
Sbjct: 2   RVLLASSSSRGLKRC--LHTASLDRSDIASAVL---DLEKQAVRAENATYARLLQRCARA 56

Query: 245 ELISVGKQLHSCALKMGF-GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           + +  G+++HS A+K      N+ +   ++ MY+ C S  DA+  FD + ++    W  +
Sbjct: 57  QALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDAKAAFDALEQRNLYSWTGL 116

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           +A +A+ G S+E L     MR  GV+ D  TF   +  C    SL    + H  +V    
Sbjct: 117 VAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRL 176

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFE 422
            +D   ++AL++ Y K G +  A+ VF KM   +NVISW+ +   +  HG   EA+  F 
Sbjct: 177 EIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFR 236

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
            MLL G++      + +LSACS   L + G  I   ++     +   +    ++ + GR 
Sbjct: 237 FMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALS-GFESELLVANAVMTMYGRC 295

Query: 483 GLLDE---------------------------------AFALIRGAPFKTTKNMWAALLT 509
           G ++E                                 A  L +    +  K  + +LL+
Sbjct: 296 GAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQLRADKVTYVSLLS 355

Query: 510 ACRVNGNLELGKFAAEKLYGMEPEKLSNYVV---LLNIYNSSGKLKEAAEVIRTLRRKGL 566
           AC    ++ LG+   +++   E EK  N +V   L+++Y   G   EA  V   + ++ +
Sbjct: 356 ACSSAEDVGLGRVLHKQIVNDELEK--NVIVGNALVSMYAKCGSHTEARAVFDKMEQRSI 413


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/606 (34%), Positives = 328/606 (54%), Gaps = 34/606 (5%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  LI A   L  +   K     ++      D+++ N ++  + +CG +    R+F  +
Sbjct: 138 TFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNI 197

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P R++VS N +I   +  G   EA  LF ++  +       T   ++ A A       G+
Sbjct: 198 PRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGR 257

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA--- 308
            +HS   +   G+++ +S A++DMY+KCGS+EDA+ +FD+M EK  V W T++ GYA   
Sbjct: 258 WVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIG 317

Query: 309 ----------------------------LHGYSEEALDLYYEMRDSGV-KMDHFTFSMII 339
                                         G  +EAL+L++E++ S   K D  T    +
Sbjct: 318 EYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTL 377

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
             C +L +++     H  + + G  L+    ++L+D Y K G ++ A  VF  +  K+V 
Sbjct: 378 SACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVF 437

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
            W+A+IAG   HG G++A+ LF +M  + ++PN VTF  +L ACS  GL E G   F  M
Sbjct: 438 VWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQM 497

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
              + + P   HYACM+++LGR GLL+EA  LI   P     ++W ALL AC ++ N+ L
Sbjct: 498 ELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVL 557

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
            + A  +L  +EP     YV+L NIY  +GK    + + + +R  GL+  P CS IEV  
Sbjct: 558 AEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDG 617

Query: 580 QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE--QRVLSYHSE 637
             H FL GD SH   K+IY K+D ++  +   GYVP +  LL  V+E++  ++ L  HSE
Sbjct: 618 IVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSE 677

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+AFGLI+T    P++IV++ R+C DCH+  KL++ +  REI++RD  RFHHF++G C
Sbjct: 678 KLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHC 737

Query: 698 SCGDYW 703
           SC DYW
Sbjct: 738 SCMDYW 743



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 132/510 (25%), Positives = 241/510 (47%), Gaps = 80/510 (15%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM--MIDARRLFDEMP 192
           +LI  C      +++K++ + ML TG   D +  +R++          +  A+++FD++P
Sbjct: 40  SLIDQC---SETKQLKQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIP 96

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGK 251
             NL + N +I     S +  ++ L+FL +  +  D   + TF  +I+A++ LE +  GK
Sbjct: 97  HPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGK 156

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
             H   +K+  G +VF+  +LI  Y+KCG +     VF  +  +  V WN++I  +   G
Sbjct: 157 AFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGG 216

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
             EEAL+L+ EM    VK +  T   ++  C + +  E  +  H+ + R+  G  +  ++
Sbjct: 217 CPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSN 276

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVIS------------------------------- 400
           A++D Y+K G +EDA+ +FDKM  K+++S                               
Sbjct: 277 AMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAA 336

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGM-RPNHVTFLAVLSACSRSG-LSERGW----- 453
           WNALI+ Y   G+ +EA+ELF ++ L+   +P+ VT ++ LSAC++ G +   GW     
Sbjct: 337 WNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYI 396

Query: 454 -----------------------EIFQSMSRDHKIKPRAMH-YACMIELLGREGLLDEAF 489
                                  ++ +++   H ++ + +  ++ MI  L   G   +A 
Sbjct: 397 KKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAI 456

Query: 490 AL---IRGAPFKTTKNMWAALLTACRVNGNLELGKF---AAEKLYGMEPEKLSNYVVLLN 543
           AL   ++    K     +  +L AC   G +E G+      E +YG+ P  + +Y  +++
Sbjct: 457 ALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLP-GVKHYACMVD 515

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACS 573
           I   +G L+EA E+I       + M PA S
Sbjct: 516 ILGRAGLLEEAVELIEK-----MPMAPAAS 540



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 91/204 (44%), Gaps = 2/204 (0%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           + +EALELF  L+          T  + +SAC  L ++     +  Y+   G + + ++ 
Sbjct: 349 KPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLT 408

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
             ++ M+ +CG +  A  +F  +  +++   + +IAG+   G   +A  LF  + E+   
Sbjct: 409 TSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVK 468

Query: 229 CGSRTFATMIRASAGLELISVGKQ-LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
             + TF  ++ A + + L+  G+   +   L  G    V     ++D+  + G +E+A  
Sbjct: 469 PNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVE 528

Query: 288 VFDEMSEKTTVG-WNTIIAGYALH 310
           + ++M        W  ++    +H
Sbjct: 529 LIEKMPMAPAASVWGALLGACTIH 552


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/434 (40%), Positives = 275/434 (63%), Gaps = 1/434 (0%)

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
           A+I  Y+K G I++A+ +FD + E+  + WN +I GYA HG   E L L+ +M ++ V+ 
Sbjct: 11  AMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRP 70

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
           +  T   ++  C +  +LE  +  H+ +  +G G+++   ++L+D YSK G +EDAR VF
Sbjct: 71  NEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVF 130

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
           +++  K+V++WN+++ GY  HG  ++A+ LF++M + G +P  +TF+ VL+ACS +GL  
Sbjct: 131 ERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVS 190

Query: 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
            GW+ F SM  ++ I+P+  HY CM+ LLGR G L+EA+ L++         +W  LL A
Sbjct: 191 EGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGA 250

Query: 511 CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLP 570
           CR++GN+ LG+  AE L          YV+L NIY ++G  +  A V   ++  G    P
Sbjct: 251 CRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEKEP 310

Query: 571 ACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQ 629
            CS IEV  + H FL+GD  H +++EIY  ++ +   +  HGY P+   +L D+ D Q++
Sbjct: 311 GCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDAQKE 370

Query: 630 RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRF 689
           R L  HSEKLA+AFGLI T   T ++IV++ R+C DCH   KLI+ +TGR++V+RD +RF
Sbjct: 371 RSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVVMRDRNRF 430

Query: 690 HHFKDGMCSCGDYW 703
           HHF +G+CSCGDYW
Sbjct: 431 HHFVNGLCSCGDYW 444



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 138/283 (48%), Gaps = 28/283 (9%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           E  L     ++  + + GM+ +AR LFD + ER+ +  N++I G    G   E  LLF  
Sbjct: 3   EKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQ 62

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           +          T   ++ A      +  G+ +HS     G G NV V  +LIDMYSKCGS
Sbjct: 63  MLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGS 122

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           +EDA+ VF+ +S K  V WN+++ GYA+HG+S++AL L+ EM   G +    TF  ++  
Sbjct: 123 LEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNA 182

Query: 342 CTRLASLEHAKQAHAGLVRHG----------FGLD--IVANSALVDFYSKWGRIEDARHV 389
           C+           HAGLV  G          +G++  +     +V+   + G +E+A  +
Sbjct: 183 CS-----------HAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYEL 231

Query: 390 FDKM-LCKNVISWNALIAG---YGNHGRGEEAVE-LFEQMLLN 427
              M + ++ + W  L+     +GN   GE+  E L  Q L N
Sbjct: 232 VKNMEIDQDPVLWGTLLGACRLHGNIALGEQIAEYLVSQNLAN 274



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 112/233 (48%), Gaps = 41/233 (17%)

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +V+ +A++  Y+K+G I++AR +FD +  ++ I WN +I GY  HG   E + LF QML 
Sbjct: 6   LVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLN 65

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERG-WEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
             +RPN VT LAVLSAC ++G  E G W    S   ++ I         +I++  + G L
Sbjct: 66  AKVRPNEVTVLAVLSACGQTGALETGRW--VHSYIENNGIGINVRVGTSLIDMYSKCGSL 123

Query: 486 DEA----------------------------------FALIRGAPFKTTKNMWAALLTAC 511
           ++A                                  F  +    ++ T   +  +L AC
Sbjct: 124 EDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNAC 183

Query: 512 RVNGNLELGK---FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
              G +  G    ++ +  YG+EP K+ +Y  ++N+   +G L+EA E+++ +
Sbjct: 184 SHAGLVSEGWKFFYSMKDEYGIEP-KVEHYGCMVNLLGRAGYLEEAYELVKNM 235



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 88/182 (48%), Gaps = 2/182 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T  A++SAC    ++   + V SY+ + G   ++ +   ++ M+ +CG + DAR +F+ +
Sbjct: 74  TVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERI 133

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG- 250
             +++V+ N ++ G    G   +A  LF ++          TF  ++ A +   L+S G 
Sbjct: 134 SNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVSEGW 193

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYAL 309
           K  +S   + G    V     ++++  + G +E+A  +   M  ++  V W T++    L
Sbjct: 194 KFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRL 253

Query: 310 HG 311
           HG
Sbjct: 254 HG 255


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/606 (32%), Positives = 336/606 (55%), Gaps = 34/606 (5%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  LI A   + S+   + +    + +    D+++ N ++  +  CG +  A ++F  +
Sbjct: 133 TFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 192

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            E+++VS N +I G +  G   +A  LF  +  E       T   ++ A A +  +  G+
Sbjct: 193 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGR 252

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL-- 309
           Q+ S   +     N+ ++ A++DMY+KCGSIEDA+ +FD M EK  V W T++ GYA+  
Sbjct: 253 QVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 312

Query: 310 -----------------------------HGYSEEALDLYYEMR-DSGVKMDHFTFSMII 339
                                        +G   EAL +++E++    +K++  T    +
Sbjct: 313 DYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTL 372

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
             C ++ +LE  +  H+ + +HG  ++    SAL+  YSK G +E +R VF+ +  ++V 
Sbjct: 373 SACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVF 432

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
            W+A+I G   HG G EAV++F +M    ++PN VTF  V  ACS +GL +    +F  M
Sbjct: 433 VWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQM 492

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
             ++ I P   HYAC++++LGR G L++A   I   P   + ++W ALL AC+++ NL L
Sbjct: 493 ESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNL 552

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
            + A  +L  +EP     +V+L NIY   GK +  +E+ + +R  GL+  P CS IE+  
Sbjct: 553 AEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDG 612

Query: 580 QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE--QRVLSYHSE 637
             H FLSGD +H  ++++Y K+  +M ++  +GY PE   +L  ++E+E  ++ L+ HSE
Sbjct: 613 MIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSE 672

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+ +GLI+T     ++++++ R+C DCH+  KLI+ +  REI+VRD  RFHHF++G C
Sbjct: 673 KLAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQC 732

Query: 698 SCGDYW 703
           SC D+W
Sbjct: 733 SCNDFW 738



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 224/453 (49%), Gaps = 48/453 (10%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM--MIDARRLF 188
           S + +LI  C+   S+R++K+   +M+ TG   D Y  +++  M        +  AR++F
Sbjct: 31  SRHISLIERCV---SLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVF 87

Query: 189 DEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC--GSRTFATMIRASAGLEL 246
           DE+P+ N  + N +I       D + +   FLD+  E S C     TF  +I+A+A +  
Sbjct: 88  DEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSE-SQCYPNKYTFPFLIKAAAEVSS 146

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           +S+G+ LH  A+K   G +VFV+ +LI  Y  CG ++ A  VF  + EK  V WN++I G
Sbjct: 147 LSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMING 206

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           +   G  ++AL+L+ +M    VK  H T   ++  C ++ +LE  +Q  + +  +   ++
Sbjct: 207 FVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVN 266

Query: 367 IVANSALVDFYSKWGRIEDARHVFD-------------------------------KMLC 395
           +   +A++D Y+K G IEDA+ +FD                                M  
Sbjct: 267 LTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQ 326

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLN-GMRPNHVTFLAVLSACSRSGLSERG-W 453
           K++++WNALI+ Y  +G+  EA+ +F ++ L   M+ N +T ++ LSAC++ G  E G W
Sbjct: 327 KDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRW 386

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
               S  + H I+      + +I +  + G L+++  +      K    +W+A++    +
Sbjct: 387 --IHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVE-KRDVFVWSAMIGGLAM 443

Query: 514 NGNLELGKFAAEKLYGMEPEKL-SNYVVLLNIY 545
           +G    G  A +  Y M+   +  N V   N++
Sbjct: 444 HG---CGNEAVDMFYKMQEANVKPNGVTFTNVF 473



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/207 (19%), Positives = 89/207 (42%), Gaps = 2/207 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N +  EAL +F  L+ +    +   T  + +SAC  + ++   + + SY+   G   + +
Sbjct: 342 NGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFH 401

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + + ++ M+ +CG +  +R +F+ + +R++   + +I G+   G   EA  +F  + E  
Sbjct: 402 VTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEAN 461

Query: 227 SDCGSRTFATMIRASAGLELISVGKQL-HSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                 TF  +  A +   L+   + L H      G          ++D+  + G +E A
Sbjct: 462 VKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKA 521

Query: 286 QGVFDEMS-EKTTVGWNTIIAGYALHG 311
               + M    +T  W  ++    +H 
Sbjct: 522 VKFIEAMPIPPSTSVWGALLGACKIHA 548


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/572 (34%), Positives = 333/572 (58%), Gaps = 3/572 (0%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMH--VRCGMMIDARRLFDEMP 192
           +L++A      + ++K + ++M+      D ++ ++++        G +  A R+F    
Sbjct: 9   SLVAAIKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTH 68

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
             NL   N II G   S   + A  L+ D++       S TF  +++A   L  +  G++
Sbjct: 69  HPNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQE 128

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LHS  +K+G      +   LI +Y+ CG ++ A  +FDEM E  +  W+T+++GYA +G 
Sbjct: 129 LHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQ 188

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
           + EAL L+ EM+   V  D FT + ++ +C  L +L+  K  H+ + + G  +D+V  +A
Sbjct: 189 AVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTA 248

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           LV  YSK G +++A  VF  M  ++V +W+ +IAGY  HG GE+A++LF+ M  +   PN
Sbjct: 249 LVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPN 308

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            VTF +VLSACS SGL E+G +IF++M  ++KI P+  HY CM++L  R G++  A   I
Sbjct: 309 CVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFI 368

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
           +  P +    +W  LL AC+ +G  +LG+  + K+  ++P    NYV++ N+Y S G+  
Sbjct: 369 QTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVSNVYASLGRWS 428

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
              +V   ++ K  +     S IE+    H F+ GD+SH + ++IY  + +M  ++ + G
Sbjct: 429 SVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREKIYGMLHQMARKLKQVG 488

Query: 613 YVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           +V     +L D+DE+E+   L  HSE+LA+A+GL++T + +P++IV++ R+C DCH  IK
Sbjct: 489 HVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIRIVKNLRVCRDCHEVIK 548

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           LI+ V  REI+VRD  RFHHF++  CSC DYW
Sbjct: 549 LISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 147/293 (50%), Gaps = 2/293 (0%)

Query: 122 FEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMM 181
           F  G    S T+  ++ AC  L  + E + + S ++  G + +  + N ++ ++  CG M
Sbjct: 99  FLCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCM 158

Query: 182 IDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRAS 241
             A  +FDEMPE +  S + +++G   +G  +EA  LF ++  E     + T A+++   
Sbjct: 159 DYACVMFDEMPEPDSASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVC 218

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
             L  + +GK +HS   K G   +V +  AL+ MYSKCGS+++A  VF  M+E+    W+
Sbjct: 219 GDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWS 278

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL-VR 360
           T+IAGYA+HG+ E+AL L+  M+ S    +  TF+ ++  C+    +E   Q    +   
Sbjct: 279 TMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTE 338

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHG 412
           +     I     +VD + + G +  A      M +  NV+ W  L+     HG
Sbjct: 339 YKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHG 391


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/621 (33%), Positives = 355/621 (57%), Gaps = 25/621 (4%)

Query: 105 VLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP 163
            LN     ALE+F E+LE   G      T   ++SAC   R I   ++V  Y +  G + 
Sbjct: 153 TLNSEPALALEVFVEMLEL--GRYPSHYTLGGMLSACSAARRIDLGQQVHGYSIKYGADT 210

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL-LFLDL 222
              M N +  ++ + G +    R F   P++N+++   +I+   +  +YL+  L LFLD+
Sbjct: 211 ITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLFLDM 270

Query: 223 WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
            E        T  +++        +S+GKQ+ +   K+G   N+ V  + + +Y + G  
Sbjct: 271 LEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGET 330

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYA---------LHGYSE--EALDLYYEMRDSGVKMD 331
           ++A  +F+EM   + + WN +I+GYA         LH  S   +AL L+ ++  S +K D
Sbjct: 331 DEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSELKPD 390

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
            FTFS I+ +C+ + +LE  +Q HA  ++ G   D+V NSALV+ Y+K G IE A   F 
Sbjct: 391 LFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKAFV 450

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
           +M  +  ++W ++I+GY  HGR ++A++LFE M+L+G RPN +TF+++LSACS +GL E 
Sbjct: 451 EMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSYAGLVEE 510

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
               F  M  ++ I+P   HY CM+++  R G LD+AF+ I+   F+  + +W++L+  C
Sbjct: 511 AERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGC 570

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           R +GN+EL  +AA++L  ++P+ +  YV+LLN+Y S+G+ ++ A V +  + + + +L  
Sbjct: 571 RSHGNMELAFYAADRLLELKPKVIETYVLLLNMYISTGRWRDVARVRKLAKHEDVGVLRD 630

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKT--LLPDVDEQEQ 629
            SWI ++ + + F + D +H Q  E+Y+ ++ ++ +    GY P +    LL D  E + 
Sbjct: 631 RSWIAIRDKVYFFRADDMTHPQATELYQLLENLLEKAKAVGYEPYQNAPELLFDSKEGDD 690

Query: 630 --------RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREI 681
                    ++ +HSE+LAVA GL+ T     +++ ++  +C DCH++IK  +++  REI
Sbjct: 691 DKPAAAAGSLIKHHSERLAVALGLLETPPGATVRVTKNITMCRDCHSSIKYFSLLANREI 750

Query: 682 VVRDASRFHHFKDGMCSCGDY 702
           VVRD+ R H FKDG CSCGD+
Sbjct: 751 VVRDSKRLHKFKDGRCSCGDF 771



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/454 (23%), Positives = 218/454 (48%), Gaps = 17/454 (3%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G  V S+ Y  L+  C+    +   + +  +M+ TG   D+++   ++ +++RC    DA
Sbjct: 71  GQTVQSAMYVPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDA 130

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           RRLFD MP++N+V+   +I G   + +   A  +F+++ E        T   M+ A +  
Sbjct: 131 RRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSACSAA 190

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             I +G+Q+H  ++K G      +  +L  +Y K G +E     F    +K  + W T+I
Sbjct: 191 RRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMI 250

Query: 305 AGYAL-HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           +  A    Y +  L L+ +M + GV  + FT + ++ +C     +   KQ  A   + G 
Sbjct: 251 SSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGC 310

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN-----------HG 412
             ++   ++ +  Y + G  ++A  +F++M   ++I+WNA+I+GY               
Sbjct: 311 EANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARS 370

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
           RG +A++LF  ++ + ++P+  TF ++LS CS     E+G +I  +  +   +    ++ 
Sbjct: 371 RGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNS 430

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGM 530
           A ++ +  + G ++ A       P +T    W ++++    +G  +  +  F    L G 
Sbjct: 431 A-LVNMYNKCGSIECATKAFVEMPTRTPVT-WTSMISGYSQHGRSQDAIQLFEDMVLSGA 488

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
            P +++ +V LL+  + +G ++EA      +R +
Sbjct: 489 RPNEIT-FVSLLSACSYAGLVEEAERYFDMMRNE 521



 Score = 80.9 bits (198), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 15/213 (7%)

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
           ++EA+ +   +RD G  +    +  ++  C     L  A+  H  +V+ G   D+   ++
Sbjct: 61  AQEAMGM---LRD-GQTVQSAMYVPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATS 116

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           LV+ Y +     DAR +FD M  KNV++W ALI G+  +     A+E+F +ML  G  P+
Sbjct: 117 LVNVYMRCASSRDARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPS 176

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR----EGLLDEA 488
           H T   +LSACS +   + G ++       + IK  A     M   L R     G L+  
Sbjct: 177 HYTLGGMLSACSAARRIDLGQQV-----HGYSIKYGADTITSMGNSLCRLYCKSGDLESG 231

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGN-LELG 520
               +G P K     W  ++++C  + N L+LG
Sbjct: 232 LRAFKGTPDKNVIT-WTTMISSCAEDENYLDLG 263


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 207/604 (34%), Positives = 342/604 (56%), Gaps = 2/604 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   V N  + E L+LF  +  + G ++   T+  ++ AC    + +    + S ++  G
Sbjct: 83  INGFVNNHLFHETLDLFLSIR-KHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCG 141

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F  D+     +L ++   G + DA ++F+E+PER++V+   + +G   +G + EA  LF 
Sbjct: 142 FNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFK 201

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            + E      S     ++ A   +  +  G+ +     +M    N FV   L+++Y+KCG
Sbjct: 202 KMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCG 261

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            +E A+ VFD M EK  V W+T+I GYA + + +E ++ + +M    +K D F+    + 
Sbjct: 262 KMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLS 321

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C  L +L+  +   + + RH F  ++   +AL+D Y+K G +     VF +M  K+++ 
Sbjct: 322 SCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVI 381

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
            NA I+G   +G  + +  +F Q    G+ P+  TFL +L  C  +GL + G   F ++S
Sbjct: 382 MNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAIS 441

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
             + +K    HY CM++L GR G+LD+A+ LI   P +    +W ALL+ CR+  + +L 
Sbjct: 442 CVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLA 501

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
           +   ++L  +EP    NYV L NIY+ SG+  EAAEV   + RKG++ +P  SWIE++  
Sbjct: 502 ETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGT 561

Query: 581 PHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKL 639
            H FL+ D+SH  + +IY K++ +  E+   G+VP  + +  DV DE+++RVL +HSEKL
Sbjct: 562 VHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKL 621

Query: 640 AVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSC 699
           AVAFGLI+T     +++V++ R+C DCH  +KLI+ +T REIVVRD +RFH F +G CSC
Sbjct: 622 AVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSC 681

Query: 700 GDYW 703
            DYW
Sbjct: 682 NDYW 685



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 176/354 (49%), Gaps = 14/354 (3%)

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           LF      N+   N +I G +++  + E   LFL + +   +    TF  +++A      
Sbjct: 67  LFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASN 126

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
             +G  LHS  +K GF  +V    +L+ +YS  G + DA  VF+E+ E++ V W  + +G
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSG 186

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           Y   G   EA+DL+ +M + GV+ D +    ++  C  +  L+  +     +V+H   ++
Sbjct: 187 YTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEW----IVKHMEEME 242

Query: 367 IVANS----ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
           +  NS     LV+ Y+K G++E AR VFD M  K++++W+ +I GY ++   +E +E F 
Sbjct: 243 MQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFL 302

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERG-WEIFQSMSRDHKIKPRAMHYACMIELLGR 481
           QML   ++P+  + +  LS+C+  G  + G W I  S+   H+          +I++  +
Sbjct: 303 QMLQENLKPDQFSIVGFLSSCASLGALDLGEWGI--SLIDRHEFLTNLFMANALIDMYAK 360

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL--GKFAAEKLYGMEPE 533
            G +   F + +    K    M AA ++    NG+++L    F   +  G+ P+
Sbjct: 361 CGAMARGFEVFKEMKEKDIVIMNAA-ISGLAKNGHVKLSFAVFGQTEKLGISPD 413



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/260 (20%), Positives = 105/260 (40%), Gaps = 44/260 (16%)

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
           ++  H KQ H  L+ H    D    + L+     + +   +  +F      N+  +N LI
Sbjct: 24  STFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLLFSHTQFPNIFLYNTLI 83

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR---D 462
            G+ N+    E ++LF  +  +G+  +  TF  VL AC+R+   + G ++   + +   +
Sbjct: 84  NGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFN 143

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL--------------- 507
           H +         ++ +    G L++A  +    P ++    W AL               
Sbjct: 144 HDVAA----MTSLLSIYSGSGRLNDAHKVFEEIPERSVVT-WTALFSGYTTAGKHREAID 198

Query: 508 --------------------LTACRVNGNLELGKFAAEKLYGMEPEKLSNY-VVLLNIYN 546
                               L+AC   G+L+ G++  + +  ME +K S     L+N+Y 
Sbjct: 199 LFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYA 258

Query: 547 SSGKLKEAAEVIRTLRRKGL 566
             GK+++A  V  ++  K +
Sbjct: 259 KCGKMEKARSVFDSMGEKDI 278


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 226/682 (33%), Positives = 367/682 (53%), Gaps = 24/682 (3%)

Query: 25  SFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECCLMEQGLKPRPKPNKIYTEELKESS 84
           S T  K L    L SG  FS    K    +  ++C ++ +         K++ E      
Sbjct: 16  SLTTLKSLHTHILKSGSLFSFFGHKLIDGY--IKCSVITEA-------RKLFDE------ 60

Query: 85  LPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLR 144
           +P+  +   ++ I S + +     + +EA+EL++ + FEG     + T+ A+  A   + 
Sbjct: 61  MPNRHIVTWNSMISSHVSR----GKTKEAIELYDNMLFEGVLP-DAYTFSAIFKAFSEMG 115

Query: 145 SIREVKRVFSYMLSTGFE-PDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
             RE ++     +  GFE  D ++   ++ M+ + G M DAR +FD + ++++V    +I
Sbjct: 116 VSREGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALI 175

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
            G    G   EA  +F D+          T A+++ +   L  +  GK +H   +K G  
Sbjct: 176 VGYNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLE 235

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
             V    +L+ MYSKC  +ED+  VF+ ++  + V W + I G   +G  E AL ++ EM
Sbjct: 236 SVVASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREM 295

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
               +  +HFTFS I+  C+ LA LE  +Q HA  V+ G   +   ++AL+  Y K G +
Sbjct: 296 IRCSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNV 355

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           E AR VF+ +   +V+S N +I  Y  +G G EA+ELFE+M   G +PN VTF+++L AC
Sbjct: 356 EKARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLAC 415

Query: 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503
           + +GL E G +IF  +  +H I+    HY CMI+LLGR    +EA  LI           
Sbjct: 416 NNAGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGKNPDVIQ- 474

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           W  LL AC+++G +E+ +   +K+    P     +++L NIY S+GK     E+    R 
Sbjct: 475 WRTLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRD 534

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
             L+  PA SW+++ ++ H F++GD SH +  EI   +  ++ ++   GY P+ K +L D
Sbjct: 535 LRLKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELIEKVITLGYNPDTKFVLQD 594

Query: 624 VDEQEQ-RVLSYHSEKLAVAFGLINT-SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREI 681
           ++E+++   L YHSEKLA+AF L  T    T ++I ++ R+C DCH+ IK ++++TGR+I
Sbjct: 595 LEEEKKISALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDCHSWIKFVSLLTGRDI 654

Query: 682 VVRDASRFHHFKDGMCSCGDYW 703
           + RDA RFHHFK G+CSC DYW
Sbjct: 655 IARDAKRFHHFKGGICSCKDYW 676



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 230/434 (52%), Gaps = 9/434 (2%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y +LI+     +S+  +K + +++L +G     +  ++++  +++C ++ +AR+LFDEMP
Sbjct: 4   YTSLIAQFTNKKSLTTLKSLHTHILKSGSLFSFF-GHKLIDGYIKCSVITEARKLFDEMP 62

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
            R++V+ N +I+  +  G   EA  L+ ++  E     + TF+ + +A + + +   G++
Sbjct: 63  NRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQK 122

Query: 253 LHSCALKMGFG-DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
            H  A+ +GF   + FV+  ++DMY+K G ++DA+ VFD + +K  V +  +I GY   G
Sbjct: 123 AHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRG 182

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
              EAL+++ +M  S +K + +T + ++  C  L  L + K  H  +V+ G    + + +
Sbjct: 183 LDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQT 242

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           +L+  YSK   +ED+  VF+ +   + ++W + I G   +GR E A+ +F +M+   + P
Sbjct: 243 SLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISP 302

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA--- 488
           NH TF ++L ACS   + E G +I  +++    +       A +I L G+ G +++A   
Sbjct: 303 NHFTFSSILHACSSLAMLEAGEQI-HAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSV 361

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
           F  +      +   M  A       +  LEL  F   K  G +P  ++ ++ +L   N++
Sbjct: 362 FESLTELDVVSINTMIYAYAQNGFGHEALEL--FERMKKLGHKPNVVT-FISILLACNNA 418

Query: 549 GKLKEAAEVIRTLR 562
           G ++E  ++   +R
Sbjct: 419 GLVEEGCQIFSLIR 432


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 209/595 (35%), Positives = 332/595 (55%), Gaps = 23/595 (3%)

Query: 132 TYDALISACIGLRSIREVKRV-FSYMLSTGFEPDLYMRNRVL------------------ 172
           + DAL   C  + S + V  V F+  L+  F PD + + R+L                  
Sbjct: 343 SLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNA 402

Query: 173 --LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
              M+ + G M ++RR+  +MP R++V+ N +I G  +  D  +A   F  +  E     
Sbjct: 403 LVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSN 462

Query: 231 SRTFATMIRASA-GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
             T  +++ A     +L+  GK LH+  +  GF  +  V  +LI MY+KCG +  +Q +F
Sbjct: 463 YITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLF 522

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           + +  +  + WN ++A  A HG+ EE L L  +MR  GV +D F+FS  +    +LA LE
Sbjct: 523 NGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLE 582

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             +Q H   V+ GF  D    +A  D YSK G I +   +    + +++ SWN LI+  G
Sbjct: 583 EGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALG 642

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            HG  EE    F +ML  G++P HVTF+++L+ACS  GL ++G   +  ++RD  ++P  
Sbjct: 643 RHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAI 702

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            H  C+I+LLGR G L EA   I   P K    +W +LL +C+++GNL+ G+ AAE L  
Sbjct: 703 EHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSK 762

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           +EPE  S YV+  N++ ++G+ ++   V + +  K ++   ACSW+++K +   F  GD+
Sbjct: 763 LEPEDDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDR 822

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINT 648
           +H QT EIY K++ +   I + GYV +    L D D EQ++  L  HSE+LA+A+ L++T
Sbjct: 823 THPQTMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMST 882

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            + + ++I ++ RIC DCH+  K ++ V GR IV+RD  RFHHF+ G+CSC DYW
Sbjct: 883 PEGSTVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 115/441 (26%), Positives = 224/441 (50%), Gaps = 10/441 (2%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSI-REVKRVFSYMLSTGFEPDLYMR 168
           Y E +E F  +  + G    S    +L++AC    S+ RE  +V  ++  +G   D+Y+ 
Sbjct: 39  YLEGMEFFRKM-CDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVS 97

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
             +L ++   G++  +R++F+EMP+RN+VS   ++ G  D G+  E   ++  +  E   
Sbjct: 98  TAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVG 157

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
           C   + + +I +   L+  S+G+Q+    +K G    + V  +LI M    G+++ A  +
Sbjct: 158 CNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYI 217

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD+MSE+ T+ WN+I A YA +G+ EE+  ++  MR    +++  T S ++ +   +   
Sbjct: 218 FDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQ 277

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
           +  +  H  +V+ GF   +   + L+  Y+  GR  +A  VF +M  K++ISWN+L+A +
Sbjct: 278 KWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASF 337

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
            N GR  +A+ L   M+ +G   N+VTF + L+AC      E+G  I   +     +   
Sbjct: 338 VNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG-RILHGLVVVSGLFYN 396

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT--ACRVNGNLELGKFAAEK 526
            +    ++ + G+ G + E+  ++   P +     W AL+   A   + +  L  F   +
Sbjct: 397 QIIGNALVSMYGKIGEMSESRRVLLQMPRRDVV-AWNALIGGYAEDEDPDKALAAFQTMR 455

Query: 527 LYGMEPEKLSNYVVLLNIYNS 547
           + G+     SNY+ ++++ ++
Sbjct: 456 VEGVS----SNYITVVSVLSA 472



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 180/364 (49%), Gaps = 5/364 (1%)

Query: 93  PSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVG--SSTYDALISACIGLRSIREVK 150
           P   + S    +V      E  E+ +I +   G  VG   ++   +IS+C  L+     +
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG 210
           ++   ++ +G E  L + N ++ M    G +  A  +FD+M ER+ +S N I A    +G
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 211 DYLEAFLLFLDLWEEFSD-CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
              E+F +F  L   F D   S T +T++     ++    G+ +H   +KMGF   V V 
Sbjct: 241 HIEESFRIF-SLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVC 299

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
             L+ MY+  G   +A  VF +M  K  + WN+++A +   G S +AL L   M  SG  
Sbjct: 300 NTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKS 359

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
           +++ TF+  +  C      E  +  H  +V  G   + +  +ALV  Y K G + ++R V
Sbjct: 360 VNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRV 419

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG-L 448
             +M  ++V++WNALI GY      ++A+  F+ M + G+  N++T ++VLSAC   G L
Sbjct: 420 LLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL 479

Query: 449 SERG 452
            ERG
Sbjct: 480 LERG 483



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 135/269 (50%), Gaps = 1/269 (0%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+ + G +  AR LFD MP RN VS N +++G++  G YLE    F  + +      S  
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 234 FATMIRASA-GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
            A+++ A      +   G Q+H    K G   +V+VS A++ +Y   G +  ++ VF+EM
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            ++  V W +++ GY+  G  EE +D+Y  MR  GV  +  + S++I  C  L      +
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           Q    +V+ G    +   ++L+      G ++ A ++FD+M  ++ ISWN++ A Y  +G
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
             EE+  +F  M       N  T   +LS
Sbjct: 241 HIEESFRIFSLMRRFHDEVNSTTVSTLLS 269



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 124/245 (50%), Gaps = 3/245 (1%)

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MY+K G ++ A+ +FD M  +  V WNT+++G    G   E ++ + +M D G+K   F 
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 335 FSMIIRICTRLASL-EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
            + ++  C R  S+     Q H  + + G   D+  ++A++  Y  +G +  +R VF++M
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             +NV+SW +L+ GY + G  EE +++++ M   G+  N  +   V+S+C        G 
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           +I   + +   ++ +      +I +LG  G +D A  +      + T + W ++  A   
Sbjct: 181 QIIGQVVKS-GLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTIS-WNSIAAAYAQ 238

Query: 514 NGNLE 518
           NG++E
Sbjct: 239 NGHIE 243


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/546 (36%), Positives = 322/546 (58%), Gaps = 13/546 (2%)

Query: 163 PDLYMRNRVLLMHVRC--GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           PD     R  ++H  C  G + +AR +FDEM ER++++   ++ G   +    +A  +F 
Sbjct: 168 PDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIF- 226

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           D+  E ++    ++ +M+        I   ++L     ++     V    A+I    + G
Sbjct: 227 DVMPEKTEV---SWTSMLMGYVQNGRIEDAEEL----FEVMPVKPVIACNAMISGLGQKG 279

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            I  A+ VFD M E+    W T+I  +  +G+  EALDL+  M+  GV+    T   I+ 
Sbjct: 280 EIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILS 339

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
           +C  LASL H KQ HA LVR  F +D+   S L+  Y K G +  ++ +FD+   K++I 
Sbjct: 340 VCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIM 399

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           WN++I+GY +HG GEEA+++F +M L+G  +PN VTF+A LSACS +G+ E G +I++SM
Sbjct: 400 WNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESM 459

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
                +KP   HYACM+++LGR G  +EA  +I     +    +W +LL ACR +  L++
Sbjct: 460 ESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGACRTHSQLDV 519

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
            +F A+KL  +EPE    Y++L N+Y S G+  + AE+ + ++ + +R  P CSW EV+ 
Sbjct: 520 AEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELRKLMKTRLVRKSPGCSWTEVEN 579

Query: 580 QPHVFLSGD-QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSE 637
           + H F  G   SH + + I + +D +   + + GY P+    L DVDE+E+   L YHSE
Sbjct: 580 KVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDCSYALHDVDEEEKVNSLKYHSE 639

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           +LAVA+ L+  S+  P++++++ R+C DCH AIK+I+ V  REI++RDA+RFHHF++G C
Sbjct: 640 RLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKVKEREIILRDANRFHHFRNGEC 699

Query: 698 SCGDYW 703
           SC DYW
Sbjct: 700 SCKDYW 705



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 110/514 (21%), Positives = 229/514 (44%), Gaps = 71/514 (13%)

Query: 88  TQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
           T +  P+A +  +I  L    +  EA +LF+  + +       S+++++++        R
Sbjct: 13  TTIPPPTANV--RITHLSRIGKIHEARKLFDSCDSKS-----ISSWNSMVAGYFANLMPR 65

Query: 148 EVKRVFSYMLSTGFEPD--LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
           + +++F  M      PD  +   N ++  +++ G + +AR++FD MPERN+VS   ++ G
Sbjct: 66  DARKLFDEM------PDRNIISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKG 119

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
            + +G    A  LF  + E+       ++  M+     +  +  G+   +C L     D 
Sbjct: 120 YVHNGKVDVAESLFWKMPEK----NKVSWTVML-----IGFLQDGRIDDACKLYEMIPDK 170

Query: 266 VFVS-CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
             ++  ++I    K G +++A+ +FDEMSE++ + W T++ GY  +   ++A  ++  M 
Sbjct: 171 DNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNRVDDARKIFDVMP 230

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           +        +++ ++    +   +E A++    +        ++A +A++    + G I 
Sbjct: 231 EK----TEVSWTSMLMGYVQNGRIEDAEELFEVMPVK----PVIACNAMISGLGQKGEIA 282

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            AR VFD M  +N  SW  +I  +  +G   EA++LF  M   G+RP   T +++LS C+
Sbjct: 283 KARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVRPTFPTLISILSVCA 342

Query: 445 RSGLSERGWEIFQSMSR------------------------------DHKIKPRAMHYAC 474
                  G ++   + R                              D       + +  
Sbjct: 343 SLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNS 402

Query: 475 MIELLGREGLLDEAFALIRGAPF----KTTKNMWAALLTACRVNGNLELG---KFAAEKL 527
           +I      GL +EA  +    P     K  +  + A L+AC   G +E G     + E +
Sbjct: 403 IISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYESMESV 462

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           +G++P   ++Y  ++++   +G+  EA E+I ++
Sbjct: 463 FGVKP-ITAHYACMVDMLGRAGRFNEAMEMIDSM 495


>gi|15242443|ref|NP_198784.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171206|sp|Q9FK93.1|PP406_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39680; AltName: Full=Protein EMBRYO DEFECTIVE 2744
 gi|9758344|dbj|BAB08900.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007080|gb|AED94463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 206/593 (34%), Positives = 321/593 (54%), Gaps = 1/593 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E L+LF+ + F G           +  +C     I E K+     L  G     ++RN +
Sbjct: 118 EVLKLFKSMFFSGESRPNEFVATVVFKSCSNSGRIEEGKQFHGCFLKYGLISHEFVRNTL 177

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+  C    +A R+ D++P  +L   +  ++G ++ G + E   +      E     +
Sbjct: 178 VYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGLDVLRKTANEDFVWNN 237

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T+ + +R  + L  +++  Q+HS  ++ GF   V    ALI+MY KCG +  AQ VFD+
Sbjct: 238 LTYLSSLRLFSNLRDLNLALQVHSRMVRFGFNAEVEACGALINMYGKCGKVLYAQRVFDD 297

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
              +      TI+  Y      EEAL+L+ +M    V  + +TF++++     L+ L+  
Sbjct: 298 THAQNIFLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAILLNSIAELSLLKQG 357

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
              H  +++ G+   ++  +ALV+ Y+K G IEDAR  F  M  +++++WN +I+G  +H
Sbjct: 358 DLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMISGCSHH 417

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G G EA+E F++M+  G  PN +TF+ VL ACS  G  E+G   F  + +   ++P   H
Sbjct: 418 GLGREALEAFDRMIFTGEIPNRITFIGVLQACSHIGFVEQGLHYFNQLMKKFDVQPDIQH 477

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           Y C++ LL + G+  +A   +R AP +     W  LL AC V  N  LGK  AE      
Sbjct: 478 YTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRTLLNACYVRRNYRLGKKVAEYAIEKY 537

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P     YV+L NI+  S + +  A+V   +  +G++  P  SWI ++ Q HVFL+ D  H
Sbjct: 538 PNDSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQH 597

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSD 650
            +   IY KV  +M +I   GY P+      DVD EQ +  LSYHSEKLAVA+GLI T +
Sbjct: 598 PEITLIYAKVKEVMSKIKPLGYSPDVAGAFHDVDEEQREDNLSYHSEKLAVAYGLIKTPE 657

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            +PL + ++ RIC DCH+AIKLI+ ++ R IV+RD++RFHHF DG CSC DYW
Sbjct: 658 KSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNRFHHFLDGQCSCCDYW 710


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 201/597 (33%), Positives = 339/597 (56%), Gaps = 45/597 (7%)

Query: 112 EALELFEILEFEGGFDVGSS----TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
           E  +LF+ + F G   + +     TY  L  AC   ++++E +++  +++  G   D+++
Sbjct: 110 ENNKLFKAIYFYGRMVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHI 169

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
           ++  + M+   G + DAR++F    E ++V  N +I G      YL+             
Sbjct: 170 KSAGIHMYASFGRLEDARKMFYS-GESDVVCWNTMIDG------YLK------------- 209

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
            CG      ++ A+ GL      K + S  +             +I+  +K G++ DA+ 
Sbjct: 210 -CG------VLEAAKGLFAQMPVKNIGSWNV-------------MINGLAKGGNLGDARK 249

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           +FDEMSE+  + W++++ GY   G  +EAL+++ +M+    +   F  S ++  C+ + +
Sbjct: 250 LFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGA 309

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           ++  +  HA L R+   LD V  +AL+D Y+K GR++    VF++M  + + +WNA+I G
Sbjct: 310 IDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGG 369

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
              HGR E+A+ELF ++    M+PN +T + VL+AC+ +G  ++G  IFQ+M   + + P
Sbjct: 370 LAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDP 429

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
              HY CM++LLGR GL  EA  LI   P K    +W ALL ACR++GN +L +   + L
Sbjct: 430 ELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLAERVGKIL 489

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
             +EP+    YV+L NIY   G+  + +++ + ++ +G++ +P  S +++    H F  G
Sbjct: 490 LELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGTVHEFKMG 549

Query: 588 DQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLI 646
           D SH Q KEIYRK+  +   +   G+ P+   +L D+DE+E+   ++YHSEKLA+AFGLI
Sbjct: 550 DGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKLAIAFGLI 609

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           NT     + IV++ R+C DCH+A KLI+ +  REI+VRD  R+HHFK+G CSC D+W
Sbjct: 610 NTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSCKDFW 666



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 180/419 (42%), Gaps = 82/419 (19%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A ++F  +P  N+   N++I G +++    +A   +  +  + +     T+ T+ +A + 
Sbjct: 86  ALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAIYFYGRMVID-ARPNKFTYPTLFKACSV 144

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
            + +  G+Q+H   +K G G +V +  A I MY+  G +EDA+ +F    E   V WNT+
Sbjct: 145 AQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYS-GESDVVCWNTM 203

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I GY   G  E A  L+ +M    VK                                  
Sbjct: 204 IDGYLKCGVLEAAKGLFAQMP---VK---------------------------------- 226

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             +I + + +++  +K G + DAR +FD+M  ++ ISW++++ GY + GR +EA+E+F+Q
Sbjct: 227 --NIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQ 284

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSER-------------------------------- 451
           M     RP      +VL+ACS  G  ++                                
Sbjct: 285 MQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGR 344

Query: 452 ---GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
              GWE+F+ M         AM     I     + L  E F+ ++    K        +L
Sbjct: 345 LDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDAL--ELFSKLQEGRMKPNGITLVGVL 402

Query: 509 TACRVNGNLELGKF---AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           TAC   G ++ G        + YG++PE L +Y  ++++   SG   EA ++I ++  K
Sbjct: 403 TACAHAGFVDKGLRIFQTMREFYGVDPE-LEHYGCMVDLLGRSGLFSEAEDLINSMPMK 460



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 96/215 (44%), Gaps = 3/215 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S ++  +   RY+EALE+F+ ++ E     G     ++++AC  + +I + + V +Y+  
Sbjct: 264 SMVDGYISAGRYKEALEIFQQMQREET-RPGRFILSSVLAACSNIGAIDQGRWVHAYLKR 322

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
              + D  +   +L M+ +CG +     +F+EM ER + + N +I G+   G   +A  L
Sbjct: 323 NSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALEL 382

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM-GFGDNVFVSCALIDMYS 277
           F  L E        T   ++ A A    +  G ++     +  G    +     ++D+  
Sbjct: 383 FSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLG 442

Query: 278 KCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHG 311
           + G   +A+ + + M  K     W  ++    +HG
Sbjct: 443 RSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHG 477


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/602 (33%), Positives = 354/602 (58%), Gaps = 4/602 (0%)

Query: 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP 163
           +V N  Y +A+  F+ ++  G      S  + +I+A     ++     V +Y +  G + 
Sbjct: 327 MVQNDMYSDAINHFQDMQDSGQKPDQVSVLN-MIAASGRSANLLAGMEVHAYAIKHGIDS 385

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           ++++ N ++ M+ +C  +      F+ MPE++L+S   IIAG   +  +L+A  L   + 
Sbjct: 386 NMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQ 445

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
            E  D       +++ A +GL+   + K++H   LK G  D + +  A++++Y +   ++
Sbjct: 446 LEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLAD-ILIQNAIVNVYGELALVD 504

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
            A+ VF+ ++ K  V W ++I     +G + EAL+L+  + ++ ++ D  T   ++    
Sbjct: 505 YARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAA 564

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            L+SL+  K+ H  L+R GF L+ +  ++LVD Y++ G +E+AR++F+ +  +++I W +
Sbjct: 565 ALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTS 624

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           +I   G HG G++A++LF +M    + P+H+TFLA+L ACS SGL   G + F+ M  ++
Sbjct: 625 MINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEY 684

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
           K++P   HYAC+++LL R   L+EA+  +R  P + +  +W ALL ACR++ N +LG+ A
Sbjct: 685 KLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVA 744

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
           A+KL  +  E   NYV++ N + + G+  +  EV   ++   L+  P CSWIEV+ + H 
Sbjct: 745 AKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHT 804

Query: 584 FLSGDQSHVQTKEIYRKVDRMM-LEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEKLAV 641
           F++ D+SH Q   IY K+ +   L   K GY  + K +  DV E+E+  + Y HSE+LA+
Sbjct: 805 FMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSERLAL 864

Query: 642 AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
            +GL+ TS  T L+I ++ RIC DCH   K+ + ++ R +VVRDASRFHHF+ G+CSCGD
Sbjct: 865 GYGLLVTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRDASRFHHFERGLCSCGD 924

Query: 702 YW 703
           +W
Sbjct: 925 FW 926



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 189/352 (53%), Gaps = 4/352 (1%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLST-GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           Y   +  C   +++ + +++ ++ L T  +   +++  + + M+ +CG   DA ++FD+M
Sbjct: 49  YSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKM 108

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            ER + + N +I   + +G Y+EA  L+ ++        + TF  +++A    +   +G 
Sbjct: 109 SERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGC 168

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE--MSEKTTVGWNTIIAGYAL 309
           ++H  A+K G+G  VFV  ALI MY+KCG +  A+ +FD   M +   V WN+II+ +  
Sbjct: 169 EIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVG 228

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G S EAL L+  M++ GV+ + +TF   ++ C     ++  +  HA +++     D+  
Sbjct: 229 EGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYV 288

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
           ++AL+  Y+  G++EDA  VF  ML K+ +SWN L++G   +    +A+  F+ M  +G 
Sbjct: 289 SNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQ 348

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
           +P+ V+ L +++A  RS     G E+  + +  H I         +I++ G+
Sbjct: 349 KPDQVSVLNMIAASGRSANLLAGMEV-HAYAIKHGIDSNMHIGNSLIDMYGK 399



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 133/465 (28%), Positives = 229/465 (49%), Gaps = 15/465 (3%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           RY EA+EL++ +   G   + + T+  ++ AC   +  R    +    +  G+   +++ 
Sbjct: 128 RYVEAIELYKEMRVLG-VSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVC 186

Query: 169 NRVLLMHVRCGMMIDARRLFDE--MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           N ++ M+ +CG +  AR LFD   M + + VS N II+  +  G+ LEA  LF  + E  
Sbjct: 187 NALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVG 246

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            +  + TF + ++A  G   I +G+ +H+  LK     +V+VS ALI MY+ CG +EDA+
Sbjct: 247 VESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAE 306

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VF  M  K  V WNT+++G   +    +A++ + +M+DSG K D  +   +I    R A
Sbjct: 307 RVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSA 366

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           +L    + HA  ++HG   ++   ++L+D Y K   ++     F+ M  K++ISW  +IA
Sbjct: 367 NLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIA 426

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL-SERGWEIFQSMSRDHKI 465
           GY  +    +A+ L  ++ L  M  + +   ++L AC  SGL SE+  +          +
Sbjct: 427 GYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLAC--SGLKSEKLIKEIHGYVLKGGL 484

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG----NLELGK 521
               +  A ++ + G   L+D A  +      K   + W +++T C  NG     LEL  
Sbjct: 485 ADILIQNA-IVNVYGELALVDYARHVFESINSKDIVS-WTSMITCCVHNGLAIEALELFN 542

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
              E    +EP+ L   V +L    +   LK+  E+   L RKG 
Sbjct: 543 SLIET--NIEPD-LITLVSVLYAAAALSSLKKGKEIHGFLIRKGF 584



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 161/330 (48%), Gaps = 23/330 (6%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           + ++  +   A  + +  G+QLH+  LK   + D+VF+    + MY KCGS  DA  VFD
Sbjct: 47  QAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFD 106

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           +MSE+T   WN +I      G   EA++LY EMR  GV +D FTF  +++ C        
Sbjct: 107 KMSERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRL 166

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK--NVISWNALIAGY 408
             + H   V+ G+G  +   +AL+  Y+K G +  AR +FD  L +  + +SWN++I+ +
Sbjct: 167 GCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAH 226

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
              G   EA+ LF +M   G+  N  TF++ L AC      + G  I       H +  +
Sbjct: 227 VGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGI-------HAVILK 279

Query: 469 AMHYA------CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LG 520
           + H+        +I +    G +++A  + +   FK   + W  LL+    N      + 
Sbjct: 280 SNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVS-WNTLLSGMVQNDMYSDAIN 338

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
            F   +  G +P+++S    +LN+  +SG+
Sbjct: 339 HFQDMQDSGQKPDQVS----VLNMIAASGR 364


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/628 (33%), Positives = 349/628 (55%), Gaps = 12/628 (1%)

Query: 79   ELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREA-LELFEILEFEGGFDVGSSTYDALI 137
            EL   ++P   +   ++ + S +E    + +Y  A L L E+L+     +    T+   +
Sbjct: 507  ELVFHTMPARDLISWNSMMASHVE----DGKYSHAILLLVEMLKTRKAMNY--VTFTTAL 560

Query: 138  SACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLV 197
            SAC  L    ++K V ++++      +L + N ++ M+ + G+M +A+++   MPER++V
Sbjct: 561  SACYNLE---KLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVV 617

Query: 198  SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE-LISVGKQLHSC 256
            + N +I G  D  D       F  +  E       T   ++      + L+  G  +H+ 
Sbjct: 618  TWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMPIHAH 677

Query: 257  ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
             +  GF  + +V  +LI MY++CG +  +  +FD ++ K +  WN I +  A +G  EEA
Sbjct: 678  IVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEEA 737

Query: 317  LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
            L     MR+ GV +D F+FS+ +     L  L+  +Q H+ +++ GF LD    +A +D 
Sbjct: 738  LKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIKLGFELDEYVLNATMDM 797

Query: 377  YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
            Y K G I+D   +      ++  SWN LI+    HG   +A E F +ML  G++P+HVTF
Sbjct: 798  YGKCGEIDDVFRILPIPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLKPDHVTF 857

Query: 437  LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
            +++LSACS  GL + G   F SM+ +  +     H  C+I+LLGR G L EA   I   P
Sbjct: 858  VSLLSACSHGGLVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRLAEAEGFIDKMP 917

Query: 497  FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
                + +W +LL AC+V+GNLELG+ AA++L+ +     S YV+  N+  S+ +  +   
Sbjct: 918  VPPNEFVWRSLLAACKVHGNLELGRKAADRLFELNSSDDSAYVLYSNVCASTQRWGDVEN 977

Query: 557  VIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPE 616
            V + +  + L+  PACSWI++K +   F  GDQ H Q+ +IY K++ +     + G++P+
Sbjct: 978  VRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQFHPQSAQIYAKLEELRKMTREEGHMPD 1037

Query: 617  EKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAM 675
                L D D EQ++  L  HSE++A+AFGLIN+++ +PL+I ++ R+C DCH+  KL++ 
Sbjct: 1038 TSYALQDTDEEQKEHNLWNHSERIALAFGLINSAEGSPLRIFKNLRVCGDCHSVFKLVSK 1097

Query: 676  VTGREIVVRDASRFHHFKDGMCSCGDYW 703
            + GR+IVVRD+ RFHHF  G CSC DYW
Sbjct: 1098 IVGRKIVVRDSYRFHHFHGGKCSCSDYW 1125



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 219/462 (47%), Gaps = 14/462 (3%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D    +  A   + I   V    Y +A++ F  + FE G    S    ++++AC     +
Sbjct: 206 DKMYDRNDASWNNMISGFVRVGWYHKAMQFFCHM-FENGVTPSSYVIASMVTACDRSGCM 264

Query: 147 RE-VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
            E  +++  Y++  G   ++++   +L  +   G + +A +LF+E+ E N+VS   ++  
Sbjct: 265 TEGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVC 324

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG-D 264
             D+G   E   ++  L      C   T AT+IR        ++G Q+    +K G    
Sbjct: 325 YADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTS 384

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           +V V+ +LI M+    S+E+A  VF+ M E+ T+ WN+II   A +G  EE+L  ++ MR
Sbjct: 385 SVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMR 444

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
            +  K D+ T S ++  C     L+  +  H  + + G   ++   ++L+  Y++ G  E
Sbjct: 445 RTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSE 504

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           DA  VF  M  +++ISWN+++A +   G+   A+ L  +ML      N+VTF   LSAC 
Sbjct: 505 DAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSAC- 563

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
               +    +I  +      +    +    ++ + G+ GL+DEA  + +  P +     W
Sbjct: 564 ---YNLEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVT-W 619

Query: 505 AALLT--ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
            AL+   A   + N  +  F   +  G+    LSNY+ ++N+
Sbjct: 620 NALIGGHADDKDPNATIQAFNLMRREGL----LSNYITIVNL 657



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 150/287 (52%), Gaps = 2/287 (0%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           + + +  N ++ M+ + G +  A+ +FD+M +RN  S N +I+G +  G Y +A   F  
Sbjct: 179 QQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRVGWYHKAMQFFCH 238

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           ++E      S   A+M+ A      ++ G +Q+H   +K G   NVFV  +L+  Y   G
Sbjct: 239 MFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHG 298

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           S+ +A  +F+E+ E   V W +++  YA +G+++E L++Y  +R +G+     T + +IR
Sbjct: 299 SVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIR 358

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVA-NSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
            C          Q    +++ G     V+  ++L+  +  +  +E+A  VF+ M  ++ I
Sbjct: 359 TCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTI 418

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           SWN++I    ++GR EE++  F  M     + +++T  A+L AC  +
Sbjct: 419 SWNSIITASAHNGRFEESLGHFFWMRRTHPKTDYITISALLPACGSA 465



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 139/278 (50%), Gaps = 4/278 (1%)

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           +VGK LH+  +K     N F +  L++MYSK GSI+ AQ VFD+M ++    WN +I+G+
Sbjct: 164 NVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGF 223

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL-EHAKQAHAGLVRHGFGLD 366
              G+  +A+  +  M ++GV    +  + ++  C R   + E A+Q H  +V+ G   +
Sbjct: 224 VRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSN 283

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +   ++L+ FY   G + +A  +F+++   N++SW +L+  Y ++G  +E + ++  +  
Sbjct: 284 VFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRH 343

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
           NG+     T   V+  C   G    G++I   + +             +I + G    ++
Sbjct: 344 NGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVE 403

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKF 522
           EA  +      + T + W +++TA   NG  E  LG F
Sbjct: 404 EASRVFNNMQERDTIS-WNSIITASAHNGRFEESLGHF 440


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 217/613 (35%), Positives = 329/613 (53%), Gaps = 53/613 (8%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID-ARRLFDEMPERNLVSCNMI 202
           ++ R++K++ +  + TG   D      V+         ID AR +F +MPE N    N I
Sbjct: 30  KTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTI 89

Query: 203 IAGMIDSGD---YLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQLHSCAL 258
           +  + ++ D     EA +LF  +  +     +R TF ++++A A    +  GKQ+H   +
Sbjct: 90  LRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIV 149

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDA--------------------------------- 285
           K GF ++ FV   L+ MY  C  +EDA                                 
Sbjct: 150 KFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNI 209

Query: 286 --------------QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
                         + +FDEM  ++ V WN +I+GYA +G+  EA++L+ EM+ S +  +
Sbjct: 210 MIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPN 269

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
           + T   ++    R+ +LE  K  H    ++   +D V  SALVD YSK G I+ A  VF+
Sbjct: 270 YVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFE 329

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
            +  +N I+W+A+I  +  HGR E+A+  F  M   G+ PN V ++ +LSACS +GL E 
Sbjct: 330 TLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEE 389

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
           G   F  M +   ++PR  HY CM++LLGR G L+EA  LIR  P +    +W ALL AC
Sbjct: 390 GRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGAC 449

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           +++ NL++G+  AE L  + P    +YV L N+Y S G  +  A V   ++   +R  P 
Sbjct: 450 KMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPG 509

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-R 630
           CSWIE+    H FL  D SH + KEI   +  M +++  +GY P    +  + DEQE+ R
Sbjct: 510 CSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERAR 569

Query: 631 VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFH 690
            L YHSEK+AVAFGLI+T+   PL+IV++ RIC DCH ++KLI+++  R+I+VRD  RFH
Sbjct: 570 ALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFH 629

Query: 691 HFKDGMCSCGDYW 703
            F+ G CSC DYW
Sbjct: 630 QFEHGSCSCMDYW 642



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 166/365 (45%), Gaps = 52/365 (14%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL LF  +  +G       T+ +++ AC     +RE K++   ++  GF  D ++ + +
Sbjct: 104 EALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNL 163

Query: 172 LLMHVRCGMMID-----------------------------------------------A 184
           + M+V C +M D                                               A
Sbjct: 164 VRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSA 223

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           + LFDEMP R++VS N++I+G   +G ++EA  LF ++     D    T  +++ A A +
Sbjct: 224 KNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARI 283

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             + +GK +H  A K     +  +  AL+DMYSKCGSI+ A  VF+ + ++  + W+ II
Sbjct: 284 GALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAITWSAII 343

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGF 363
             +A+HG +E+A+  ++ M  +GV  +   +  I+  C+    +E  +   + +V+  G 
Sbjct: 344 GAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGL 403

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAG---YGNHGRGEEAVE 419
              I     +VD   + G +E+A  +   M +  + + W AL+     + N   GE   E
Sbjct: 404 QPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAE 463

Query: 420 LFEQM 424
              ++
Sbjct: 464 TLMEL 468


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 223/647 (34%), Positives = 362/647 (55%), Gaps = 46/647 (7%)

Query: 78  EELKESSLPDTQMKKPSAGICSQI-EKLVLNKRYREALELFEILEFEGGFDVGSSTYDAL 136
           + L+E+S    +M       C+ + +    N    EA ELF+     G  D  ++  +A+
Sbjct: 150 DRLEEASALFRRMPLWDTVTCTSVLQGYAHNGHLAEAQELFD--RIGGAGDRDATACNAM 207

Query: 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR-----VLLMHVRCGMMIDARRLFDEM 191
           I+A           +     L+ G    + +RN      +LL + + G +  A++ FD M
Sbjct: 208 IAA---------YGKNARVDLAEGLFAQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRM 258

Query: 192 PERNLVSCNMIIAGMIDSGDYLEA-----FLLFLDL--WEEFSDCGSRT--FATMIRASA 242
           P+R+ ++   + A + D G+   A     +L  +D+  W    +  SRT     + R  +
Sbjct: 259 PQRDSIAFTAMTAVLSDQGELRGAREMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFS 318

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
            +E  +V   +              V+  L+++Y KCG ++DA+ V D M  +T+V W  
Sbjct: 319 AMEHRTVATTV--------------VAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSWTA 364

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +IA YA +G + EA++L+  M   G +    T   ++  C  L +L   K+ HA +    
Sbjct: 365 MIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRSSP 424

Query: 363 -FGLDIVANSALVDFYSKWGRIEDARHVFDK--MLCKNVISWNALIAGYGNHGRGEEAVE 419
            F   ++  +A++  Y K G +E AR VF+   +  ++V++W A+I  Y  +G GEEA+E
Sbjct: 425 LFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNGVGEEAIE 484

Query: 420 LFEQMLLNG-MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478
           LF++M+++G   PN VTFL+VLSACS  G  E+ WE F SM  D  + P   HY C+++L
Sbjct: 485 LFQEMVIDGGTEPNRVTFLSVLSACSHLGQLEQAWEHFCSMGPDFGVPPAGDHYCCLVDL 544

Query: 479 LGREGLLDEAFALI-RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
           LGR G L EA  L+ R   F+     W A L+AC++NG+LE  + AA+++  +EPE ++ 
Sbjct: 545 LGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAKRVSELEPENVAG 604

Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI 597
            V+L N+Y + G+  + A +   ++  G++     SWIE+  + H F+  D SH +  EI
Sbjct: 605 RVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFMVSDVSHPRKLEI 664

Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQI 656
           Y +++R+  EI + GYVP+ K +L DVDE+++ ++L YHSE+LA+A G+I+T   T L++
Sbjct: 665 YSELERLHREIKEAGYVPDTKMVLRDVDEEKKAQLLGYHSERLAMALGIISTPPGTTLRV 724

Query: 657 VQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           V++ R+C DCH A K I+ + GR+I+VRD SRFHHFKDG+CSCGDYW
Sbjct: 725 VKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 771



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 149/332 (44%), Gaps = 50/332 (15%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           +R F   IRA A    +   K LH    +   GDN  ++  LID++ KCG  + A+ VF+
Sbjct: 7   ARRFEERIRACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFN 66

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            +       W+ II  Y       +A  L+    DS    D FT++++I    R+  L+ 
Sbjct: 67  RVRLPNEYSWSCIIQAYVSSSRIHDARALF----DSMPGFDAFTWNIMIAAYARINRLDD 122

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
           A++   G++    G D+V+ + LV  Y++  R+E+A  +F +M   + ++  +++ GY +
Sbjct: 123 ARELFHGMIS---GRDVVSWAILVAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGYAH 179

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           +G   EA ELF+++   G R          +AC+                          
Sbjct: 180 NGHLAEAQELFDRIGGAGDRD--------ATACN-------------------------- 205

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
               MI   G+   +D A  L      +   + W+ LL     NG+L+L K + +++   
Sbjct: 206 ---AMIAAYGKNARVDLAEGLFAQIKLRNAAS-WSLLLLTYAQNGHLDLAKKSFDRM--- 258

Query: 531 EPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTL 561
            P++ S  +  +  + +  G+L+ A E++R L
Sbjct: 259 -PQRDSIAFTAMTAVLSDQGELRGAREMLRYL 289



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 113/522 (21%), Positives = 206/522 (39%), Gaps = 109/522 (20%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           ++  I AC   R + E K +   +  +    +  + N ++ +  +CG    AR +F+ + 
Sbjct: 10  FEERIRACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVR 69

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
             N  S + II   + S    +A  LF    +      + T+  MI A A +  +   ++
Sbjct: 70  LPNEYSWSCIIQAYVSSSRIHDARALF----DSMPGFDAFTWNIMIAAYARINRLDDARE 125

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           L      M  G +V     L+  Y++   +E+A  +F  M    TV   +++ GYA +G+
Sbjct: 126 LFH---GMISGRDVVSWAILVAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGYAHNGH 182

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMI----------------IRICTRLAS------LEH 350
             EA +L+  +  +G +      +MI                 +I  R A+      L +
Sbjct: 183 LAEAQELFDRIGGAGDRDATACNAMIAAYGKNARVDLAEGLFAQIKLRNAASWSLLLLTY 242

Query: 351 AKQAHAGLVRHGF-----------------------------------GLDIVANSALVD 375
           A+  H  L +  F                                    +D++A +AL++
Sbjct: 243 AQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGELRGAREMLRYLSAVDVIAWNALLE 302

Query: 376 FYSKWGRIE----------------------------------DARHVFDKMLCKNVISW 401
            YS+ G ++                                  DAR V D M  +  +SW
Sbjct: 303 GYSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVSW 362

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
            A+IA Y  +G   EA+ LF+ M L G  P+ +T ++V+ +C+  G    G  I   +  
Sbjct: 363 TAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHARIRS 422

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM-WAALLTACRVNGNLELG 520
                   M    +I + G+ G L+ A  +    P +T   + W A++ A   NG   +G
Sbjct: 423 SPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRAYAQNG---VG 479

Query: 521 KFAAEKLY------GMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
           + A E         G EP +++ ++ +L+  +  G+L++A E
Sbjct: 480 EEAIELFQEMVIDGGTEPNRVT-FLSVLSACSHLGQLEQAWE 520


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/549 (36%), Positives = 305/549 (55%), Gaps = 36/549 (6%)

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           LF      ++     II G    G + +A   +  +  +  +  + TF+++++    L  
Sbjct: 31  LFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILK----LCP 86

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG------- 299
           I  GK LHS A+K+GF  +++V   L+D+Y++ G +  AQ +FD M EK+ V        
Sbjct: 87  IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTC 146

Query: 300 ------------------------WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
                                   WN +I GY  +G   EAL L+  M  +  K +  T 
Sbjct: 147 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 206

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
             ++  C +L +LE  +  H+ +  +G   ++   +ALVD YSK G +EDAR VFDK+  
Sbjct: 207 LSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDD 266

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           K+V++WN++I GY   G  +EA++LF+ M   G+ P ++TF+ +LSAC  SG    GW+I
Sbjct: 267 KDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDI 326

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F  M  ++ I+P+  HY CM+ LLGR G +++A+ L++    +    +W  LL ACR++G
Sbjct: 327 FNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHG 386

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575
            + LG+   E L          Y++L NIY + G     A +   ++  G++  P CS I
Sbjct: 387 KIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSI 446

Query: 576 EVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSY 634
           EV  + H FL+G  +H + KEIY  ++ +   +  HGY P+   +L D+ E E +R L  
Sbjct: 447 EVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEV 506

Query: 635 HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKD 694
           HSEKLA+AFGLINT   T ++IV++ R+C DCH   KLI+ +TGR+IVVRD +RFHHF +
Sbjct: 507 HSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVN 566

Query: 695 GMCSCGDYW 703
           G CSCGDYW
Sbjct: 567 GSCSCGDYW 575



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 165/351 (47%), Gaps = 63/351 (17%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G +  + T+ +++  C     I   K + S  +  GF+ DLY+R  +L ++ R G ++ A
Sbjct: 70  GVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSA 125

Query: 185 RRLFDEMPERNLVSC-------------------------------NMIIAGMIDSGDYL 213
           ++LFD MPE++LVS                                N++I G   +G   
Sbjct: 126 QQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPN 185

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA +LF  + +  +     T  +++ A   L  +  G+ +HS     G   NV V  AL+
Sbjct: 186 EALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALV 245

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           DMYSKCGS+EDA+ VFD++ +K  V WN++I GYA+ G+S+EAL L+  M   G+   + 
Sbjct: 246 DMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNI 305

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHG----------FGLD--IVANSALVDFYSKWG 381
           TF  I+  C            H+G V  G          +G++  I     +V+   + G
Sbjct: 306 TFIGILSAC-----------GHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAG 354

Query: 382 RIEDARHVFDKM-LCKNVISWNALIAGYGNHGR---GEEAVELF-EQMLLN 427
            +E A  +   M +  + + W  L+     HG+   GE+ VEL  +Q L N
Sbjct: 355 HVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLAN 405



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 161/356 (45%), Gaps = 76/356 (21%)

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           Y+  G ++ +  +F      +   W  II G+AL G  E+AL+ Y +M   GV+ + FTF
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
           S I+++C     +E  K  H+  V+ GF  D+   + L+D Y++ G +  A+ +FD M  
Sbjct: 79  SSILKLC----PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPE 134

Query: 396 KNVIS-------------------------------WNALIAGYGNHGRGEEAVELFEQM 424
           K+++S                               WN +I GY  +G   EA+ LF +M
Sbjct: 135 KSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRM 194

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERG-WEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           L    +PN VT L+VLSAC + G  E G W    S   ++ I+        ++++  + G
Sbjct: 195 LKAKAKPNEVTVLSVLSACGQLGALESGRW--VHSYIENNGIQFNVHVGTALVDMYSKCG 252

Query: 484 LLDEA---------------FALIRGAP-----------FKT--------TKNMWAALLT 509
            L++A                ++I G             FK+        T   +  +L+
Sbjct: 253 SLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILS 312

Query: 510 ACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           AC  +G +  G     K+   YG+EP K+ +Y  ++N+   +G +++A E+++ + 
Sbjct: 313 ACGHSGWVTEGWDIFNKMKDEYGIEP-KIEHYGCMVNLLGRAGHVEQAYELVKNMN 367


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 231/724 (31%), Positives = 373/724 (51%), Gaps = 94/724 (12%)

Query: 51  KRSFQRVECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRY 110
           ++  QR   CL+E+ +      N    +  K   +P + +K  +    S          +
Sbjct: 18  QKEMQR---CLLERTVGFPENLNWFTIQHAKPRPIPPSIVKSFTCAAKSFFATAHNGASF 74

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
            E+L+L                Y +LI  CIG++SI ++ ++ S+ L  GF   L   N+
Sbjct: 75  SESLQL----------------YSSLIQQCIGIKSITDITKIQSHALKRGFHHSL--GNK 116

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF-------------- 216
           ++  +++CG ++ AR++FDE+P R++V+ N +IA  I +G   EA               
Sbjct: 117 LIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPD 176

Query: 217 -LLFLDLWEEFSDCG-----SRTFATMIRASAGLELISVGKQLHSCALKMG--------- 261
              F  +++ FSD G      R     +    G+  + VG  L     K G         
Sbjct: 177 EFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVS 236

Query: 262 ---FGDNVFVSCALIDMYSK--------------------------------CGSIED-- 284
               G +V +  ALI  YS                                 CG++ED  
Sbjct: 237 DQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLT 296

Query: 285 ----AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
                 G+  +   ++ V W ++I G   +G  E AL  + +M  S +  + FT S ++R
Sbjct: 297 SGRLIHGLIVKAGLESAVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLR 356

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C+ LA LE  KQ HA +++ G  +D    +AL+DFY K G  E AR VF+ +L  +V+S
Sbjct: 357 ACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVS 416

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
            N++I  Y  +G G EA++LF  M   G+ PN+VT+L VLSAC+ +GL E G  IF S  
Sbjct: 417 VNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSAR 476

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
               I+    HYACM++LLGR G L EA  LI          +W  LL+ACR++G++E+ 
Sbjct: 477 NSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNISDVV-IWRTLLSACRIHGDVEMA 535

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
           K    ++  + PE    +V+L N+Y S+G   +  E+   +R   L+  PA SW++V+++
Sbjct: 536 KRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVERE 595

Query: 581 PHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKL 639
            H F++GD SH   ++I  K++ ++ ++ + GYVP+ + +L D+DE+++ R L YHSEKL
Sbjct: 596 IHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKL 655

Query: 640 AVAFGLINTS-DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCS 698
           AVAF L  ++   T ++I+++ R+C DCH  +K ++ + GR+I+ RD  RFHHF++G+CS
Sbjct: 656 AVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCS 715

Query: 699 CGDY 702
           CGDY
Sbjct: 716 CGDY 719


>gi|413943701|gb|AFW76350.1| hypothetical protein ZEAMMB73_198527 [Zea mays]
          Length = 515

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 199/516 (38%), Positives = 312/516 (60%), Gaps = 4/516 (0%)

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           MP  + VS   +IA  +D+G  LEA  +    +       S T   ++ A A +  +  G
Sbjct: 1   MPHPSTVSWTALIAAYMDAGHALEAIGVARRAFASGMRPDSFTAVRVLTACARVADLETG 60

Query: 251 KQLHSCALKM-GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           + + + A +  G  ++VFV+ A +D+Y KCG +E A+ VFDEM  +  V W  ++ GYA 
Sbjct: 61  EAVWAAARQEEGVAESVFVATAALDLYVKCGEMEKARSVFDEMKNRDAVAWGAMVGGYAS 120

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL-DIV 368
           +G+  EALDL++ M+  G K D +T    +  CTRL +L+  +QA  G+V     L + V
Sbjct: 121 NGHPREALDLFFAMQMEGAKPDCYTVVGALSACTRLGALDLGRQA-VGMVHWDEVLGNPV 179

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             +AL+D Y+K G   +A  VF +ML +++I WNA+I G G  G  + A  L  QM  +G
Sbjct: 180 LGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWNAMILGLGMTGHEKIAFALVGQMKKSG 239

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           ++ N  TF+ +L +C+ +GL   G + F +M+  ++I PR  HY CM++L  R GLL+EA
Sbjct: 240 VKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHVYRISPRIEHYGCMVDLFSRAGLLEEA 299

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
             LI   P      +W ALL  C+++ N +L + A ++L  +EP    NYV+L NIY++S
Sbjct: 300 HQLIGDMPMLANAVVWGALLGGCKIHRNADLAEHALKQLIRLEPWNSGNYVMLSNIYSNS 359

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           G+ ++AA++   ++ KG+  +PA SW+E+  + H F  GD SH  + +IY K+D + +E+
Sbjct: 360 GRWEDAAKLRLEMKAKGIEKVPASSWVELDGKVHKFYVGDDSHPLSDKIYAKLDELGMEM 419

Query: 609 SKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
              GY P  + ++ DV +E+++  L +HSEK+A+AF LI T     +++ ++ R+C DCH
Sbjct: 420 KAMGYEPTTEVVMFDVENEEKENTLVHHSEKIAIAFSLITTEPGETIRVTKNLRVCTDCH 479

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +AIKLI+ +T REIVVRD +RFH F+DG CSC DYW
Sbjct: 480 SAIKLISRITCREIVVRDNNRFHCFRDGHCSCNDYW 515



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 145/311 (46%), Gaps = 11/311 (3%)

Query: 122 FEGGFDVGSSTYDALISACIGLRSIREVKRVFSYM-LSTGFEPDLYMRNRVLLMHVRCGM 180
           F  G    S T   +++AC  +  +   + V++      G    +++    L ++V+CG 
Sbjct: 33  FASGMRPDSFTAVRVLTACARVADLETGEAVWAAARQEEGVAESVFVATAALDLYVKCGE 92

Query: 181 MIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA 240
           M  AR +FDEM  R+ V+   ++ G   +G   EA  LF  +  E +     T    + A
Sbjct: 93  MEKARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGALSA 152

Query: 241 SAGLELISVGKQLHSCALKMGFGDNVF----VSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
              L  + +G+Q    A+ M   D V     +  ALIDMY+KCGS  +A  VF +M E+ 
Sbjct: 153 CTRLGALDLGRQ----AVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERD 208

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
            + WN +I G  + G+ + A  L  +M+ SGVK++  TF  ++  CT    +   +Q   
Sbjct: 209 IIVWNAMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFH 268

Query: 357 GLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRG 414
            +   +     I     +VD +S+ G +E+A  +   M +  N + W AL+ G   H   
Sbjct: 269 NMTHVYRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIHRNA 328

Query: 415 EEAVELFEQML 425
           + A    +Q++
Sbjct: 329 DLAEHALKQLI 339



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 100/232 (43%), Gaps = 3/232 (1%)

Query: 81  KESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISAC 140
           K  S+ D    + +    + +     N   REAL+LF  ++ EG      +   AL SAC
Sbjct: 95  KARSVFDEMKNRDAVAWGAMVGGYASNGHPREALDLFFAMQMEGAKPDCYTVVGAL-SAC 153

Query: 141 IGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCN 200
             L ++   ++    +       +  +   ++ M+ +CG   +A  +F +M ER+++  N
Sbjct: 154 TRLGALDLGRQAVGMVHWDEVLGNPVLGTALIDMYAKCGSTSEAWMVFQQMLERDIIVWN 213

Query: 201 MIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ-LHSCALK 259
            +I G+  +G    AF L   + +        TF  ++ +     L++ G+Q  H+    
Sbjct: 214 AMILGLGMTGHEKIAFALVGQMKKSGVKLNDNTFIGLLCSCTHTGLVNDGRQYFHNMTHV 273

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE-KTTVGWNTIIAGYALH 310
                 +     ++D++S+ G +E+A  +  +M      V W  ++ G  +H
Sbjct: 274 YRISPRIEHYGCMVDLFSRAGLLEEAHQLIGDMPMLANAVVWGALLGGCKIH 325


>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
          Length = 977

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/471 (39%), Positives = 296/471 (62%), Gaps = 13/471 (2%)

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
           F +  +A   L    +G+ +HS A+K G+  +VFV  +++DMY+KCG I DA+ +FDEM 
Sbjct: 13  FPSATKACGILSRCDIGQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGEIGDARKMFDEMP 72

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
           ++  V W+ +I GY+  G  EEAL L+ +     + ++ FTFS ++R+C     LE  KQ
Sbjct: 73  DRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDLDVNDFTFSSVVRVCGNSTLLELGKQ 132

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            H   ++  +       S+L+  YSK G IEDA  VF ++  +N+  WNA++     H  
Sbjct: 133 IHGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIPIRNLGMWNAMLIACAQHAH 192

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
            E+A +LF+QM   GM+PN +TFL VL ACS +GL E+G   F+ M +++ I+P A HYA
Sbjct: 193 TEKAFDLFKQMEGVGMKPNFITFLCVLYACSHAGLVEKGQFYFELM-KEYGIEPGAQHYA 251

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533
            M++LLGR G L +A ++I+  P + T+++W ALLT CR++G+ EL  F A++++ + P 
Sbjct: 252 SMVDLLGRAGKLKDAVSIIKKMPMEPTESVWGALLTGCRIHGDTELASFVADRVFELGP- 310

Query: 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQ 593
                     + +++G+ +EAA   + LR +G++     SW+E   + H F +GD+SH  
Sbjct: 311 ----------VSSAAGRYEEAARARKMLRDQGVKKETGLSWVEEGNRIHTFAAGDRSHPY 360

Query: 594 TKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWT 652
           TK+IY+K++ +  E+ + GY+ +   +L +VD E++ + + YHSE+LA+AFGLI+     
Sbjct: 361 TKDIYKKLEELGEEMERAGYIADTSFVLQEVDGEEKNQTIRYHSERLAIAFGLISFPPER 420

Query: 653 PLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           P++++++ R+C DCH AIK ++   GR I+VRD +RFH F+DG CSC DYW
Sbjct: 421 PIRVMKNLRVCGDCHTAIKFMSKCCGRTIIVRDNNRFHRFEDGNCSCRDYW 471



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 152/280 (54%), Gaps = 23/280 (8%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           + V S+ + TG++ D+++ + ++ M+ +CG + DAR++FDEMP+RN+VS + +I G    
Sbjct: 30  QSVHSFAVKTGYDCDVFVGSSMVDMYAKCGEIGDARKMFDEMPDRNVVSWSGMIYGYSQM 89

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
           G+  EA  LF     E  D    TF++++R      L+ +GKQ+H   LK  +  + FV 
Sbjct: 90  GEDEEALRLFKQALIEDLDVNDFTFSSVVRVCGNSTLLELGKQIHGLCLKTSYDSSSFVG 149

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            +LI +YSKCG IEDA  VF E+  +    WN ++   A H ++E+A DL+ +M   G+K
Sbjct: 150 SSLISLYSKCGVIEDAYLVFHEIPIRNLGMWNAMLIACAQHAHTEKAFDLFKQMEGVGMK 209

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG---------FGLDIVAN--SALVDFYS 378
            +  TF  ++  C+           HAGLV  G         +G++  A   +++VD   
Sbjct: 210 PNFITFLCVLYACS-----------HAGLVEKGQFYFELMKEYGIEPGAQHYASMVDLLG 258

Query: 379 KWGRIEDARHVFDKMLCKNVIS-WNALIAGYGNHGRGEEA 417
           + G+++DA  +  KM  +   S W AL+ G   HG  E A
Sbjct: 259 RAGKLKDAVSIIKKMPMEPTESVWGALLTGCRIHGDTELA 298



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 131/276 (47%), Gaps = 40/276 (14%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M D+GV+ D   F    + C  L+  +  +  H+  V+ G+  D+   S++VD Y+K G 
Sbjct: 1   MLDNGVRPDDHIFPSATKACGILSRCDIGQSVHSFAVKTGYDCDVFVGSSMVDMYAKCGE 60

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           I DAR +FD+M  +NV+SW+ +I GY   G  EEA+ LF+Q L+  +  N  TF +V+  
Sbjct: 61  IGDARKMFDEMPDRNVVSWSGMIYGYSQMGEDEEALRLFKQALIEDLDVNDFTFSSVVRV 120

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
           C  S L E G +I   +         +   + +I L  + G++++A+ +    P +    
Sbjct: 121 CGNSTLLELGKQI-HGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIPIRNL-G 178

Query: 503 MWAALLTACRVN-----------------------------------GNLELGKFAAE-- 525
           MW A+L AC  +                                   G +E G+F  E  
Sbjct: 179 MWNAMLIACAQHAHTEKAFDLFKQMEGVGMKPNFITFLCVLYACSHAGLVEKGQFYFELM 238

Query: 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           K YG+EP    +Y  ++++   +GKLK+A  +I+ +
Sbjct: 239 KEYGIEPGA-QHYASMVDLLGRAGKLKDAVSIIKKM 273



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 100/211 (47%), Gaps = 12/211 (5%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV-KRVFSYMLSTGFEPDLYMRNR 170
           EAL LF+    E   DV   T+ +++  C G  ++ E+ K++    L T ++   ++ + 
Sbjct: 94  EALRLFKQALIED-LDVNDFTFSSVVRVC-GNSTLLELGKQIHGLCLKTSYDSSSFVGSS 151

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ ++ +CG++ DA  +F E+P RNL   N ++          +AF    DL+++    G
Sbjct: 152 LISLYSKCGVIEDAYLVFHEIPIRNLGMWNAMLIACAQHAHTEKAF----DLFKQMEGVG 207

Query: 231 SR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            +    TF  ++ A +   L+  G+       + G         +++D+  + G ++DA 
Sbjct: 208 MKPNFITFLCVLYACSHAGLVEKGQFYFELMKEYGIEPGAQHYASMVDLLGRAGKLKDAV 267

Query: 287 GVFDEMS-EKTTVGWNTIIAGYALHGYSEEA 316
            +  +M  E T   W  ++ G  +HG +E A
Sbjct: 268 SIIKKMPMEPTESVWGALLTGCRIHGDTELA 298


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 211/625 (33%), Positives = 339/625 (54%), Gaps = 67/625 (10%)

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID---ARRLFDEMPERNLVSCNMI 202
           + ++ ++ + ++ T  + + ++  ++L     C    D   AR +FDE+P  +    N +
Sbjct: 16  LNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTM 75

Query: 203 IAGMIDSGDYLEAFLLFLDL-WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           I   ++S +  E+  LF  +  +E     S + + +I+A   L+    G++LH+  LK+G
Sbjct: 76  IRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIG 135

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGV-------------------------------FD 290
            G ++FV  ALI+MY+K G IE A+ +                               FD
Sbjct: 136 LGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFD 195

Query: 291 EMSEKTTVGWNTIIAGYALHG-------------------------------YSEEALDL 319
            M E+  V WNT+I G+A  G                                S EAL L
Sbjct: 196 RMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRL 255

Query: 320 YYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379
           ++EM+ + V  D  T   ++  C  + +L   K  H  + R+   +D+   ++LVD Y+K
Sbjct: 256 FHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAK 315

Query: 380 WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
            G I+++  VF+ M  ++V +W+A+I G  NHG GE A++ F +M+   ++PN VTF+ V
Sbjct: 316 CGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGV 375

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499
           LSACS  GL + GW  F SMS+ + + P+  HY C++++LGR G L EA  LI+  PF  
Sbjct: 376 LSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAP 435

Query: 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
              +W ALL ACR+  N+E+ + A   L  +EP    NYV+L NIY+ + +  +   V R
Sbjct: 436 DAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRR 495

Query: 560 TLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKT 619
            ++   ++ +P  S IEV    H F++GDQSH ++K+I R +  +   +  +GY P   +
Sbjct: 496 MMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTAS 555

Query: 620 LLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTG 678
           +L D DE+E +  L++HSEKLA+AFGL++T+  + ++IV++ R+C DCH AIKLI+    
Sbjct: 556 VLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYK 615

Query: 679 REIVVRDASRFHHFKDGMCSCGDYW 703
           R I+VRD +RFHHF +G CSC DYW
Sbjct: 616 RRIIVRDRNRFHHFVNGSCSCKDYW 640


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/527 (36%), Positives = 308/527 (58%), Gaps = 2/527 (0%)

Query: 179 GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMI 238
           G M  A  +F ++ +      N +I G ++  +   A  L+ ++ E   +  + T+  + 
Sbjct: 33  GSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLYYEMLERGVESDNFTYPALF 92

Query: 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV 298
           +A A L  I  G Q+H    K G   ++FV  +LI+MY KCG IE +  VF+ M  +   
Sbjct: 93  KACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVFEHMDRRDVA 152

Query: 299 GWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
            W+ IIA +A  G   E L ++ EM R+   + +      ++  CT L +L+  +  H  
Sbjct: 153 SWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGALDLGRCTHVT 212

Query: 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417
           L+R+   ++++  ++L+D Y K G IE    +F +M+ KN +S++ +I G   HGRG EA
Sbjct: 213 LLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEA 272

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           +++F  ML  G++P+ V +L VLSAC+ +GL + G + F  M  +H I+P   HY C++ 
Sbjct: 273 LQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVH 332

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537
           L+GR G+L++A   IR  P K  + +W  LL+AC+ + NLE+G+ AA+ L  +      +
Sbjct: 333 LMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIGEIAAKSLGELNSSNPGD 392

Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEI 597
           YVVL N+Y  + + ++ A++   + RKG    P  S ++V+++ + F+S D SH Q K +
Sbjct: 393 YVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGM 452

Query: 598 YRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQI 656
           Y  + +M  ++   GY P+   +L DVDE+E+R  L  HS+KLA+AF LI+TS   P++I
Sbjct: 453 YEMIHQMEWQLKFEGYSPDTSQVLFDVDEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRI 512

Query: 657 VQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++ R+C DCH   KLI+++  REI VRD +RFHHFKDG CSC DYW
Sbjct: 513 ARNLRMCNDCHTYTKLISVIYQREITVRDRNRFHHFKDGTCSCRDYW 559



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 151/328 (46%), Gaps = 10/328 (3%)

Query: 122 FEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMM 181
            E G +  + TY AL  AC  LRSI E  ++  Y+   G E DL+++N ++ M+ +CG +
Sbjct: 77  LERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKI 136

Query: 182 IDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR--TFATMIR 239
             +  +F+ M  R++ S + IIA     G + E   +F ++  E S C        +++ 
Sbjct: 137 ELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGS-CRPEESILVSVLS 195

Query: 240 ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
           A   L  + +G+  H   L+     NV V  +LIDMY KCG IE    +F  M +K  + 
Sbjct: 196 ACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQLS 255

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL- 358
           ++ +I G A+HG   EAL ++ +M + G+K D   +  ++  C     ++   Q    + 
Sbjct: 256 YSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMK 315

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDA-RHVFDKMLCKNVISWNALIAGYGNHGR---G 414
           + HG    I     +V    + G +  A  H+    +  N + W  L++    H     G
Sbjct: 316 LEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLEIG 375

Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           E A +   +  LN   P     L+ + A
Sbjct: 376 EIAAKSLGE--LNSSNPGDYVVLSNMYA 401


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 186/475 (39%), Positives = 295/475 (62%), Gaps = 4/475 (0%)

Query: 233 TFATMIRASAGLE-LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS--IEDAQGVF 289
           TF  +++A A L     VG Q H+ ALK GF  + +VS  LI MYS  G   + DA+ VF
Sbjct: 128 TFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVF 187

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           D M +++ V W+ +I GY   G S +A+DL+ EM+ +GV+ D  T   ++   T L +LE
Sbjct: 188 DRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALE 247

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
            A+     + R G G  +   +AL+D  +K G ++ A  VF+ M  ++V+SW ++I    
Sbjct: 248 LARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALA 307

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
             GRG+EAV +FE+M + G+ P+ V F+ VL+ACS +G+ + G   F +M  ++ I+P+ 
Sbjct: 308 MEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKI 367

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HY CM+++ GR G+++ A   +R  P +    +W +L++ACR +G LELG+     L  
Sbjct: 368 EHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLH 427

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
             P   +NY++L N++  + + KE +E+ R + ++G++ +P CS +E+  + H F++GD+
Sbjct: 428 EYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDE 487

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINT 648
           SH Q K+IYR V+ M  E+ + G++     +L D+DE+++   L +HSEKLA+AF L+ T
Sbjct: 488 SHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRT 547

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              T +++V++ R+C DCH AIK I+ V  REIVVRD SRFH FKDG CSC D+W
Sbjct: 548 PPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 145/316 (45%), Gaps = 29/316 (9%)

Query: 117 FEILEFEGGFDVGSSTYDALISACIGLRSIREVK-RVFSYMLSTGFEPDLYMRNRVLLMH 175
           F  L   G       T+  L+ AC  L    +V  +  +  L  GF  D Y+ N ++ M+
Sbjct: 113 FFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMY 172

Query: 176 VRC---GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
             C   G + DAR +FD MP+ + V+ + +I G +  G   +A  LF ++          
Sbjct: 173 -SCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEV 231

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T   ++ A+  L  + + + +     + G G +V +  ALID  +KCG ++ A  VF+ M
Sbjct: 232 TVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGM 291

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            +++ V W ++I   A+ G  +EA+ ++ EM+ +GV  D   F  ++  C+         
Sbjct: 292 QQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACS--------- 342

Query: 353 QAHAGLVRHG----------FGLD--IVANSALVDFYSKWGRIEDARHVFDKM-LCKNVI 399
             HAG+V  G          +G++  I     +VD + + G +E A      M +  N +
Sbjct: 343 --HAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPV 400

Query: 400 SWNALIAGYGNHGRGE 415
            W +L++    HGR E
Sbjct: 401 IWRSLVSACRAHGRLE 416


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 215/628 (34%), Positives = 346/628 (55%), Gaps = 12/628 (1%)

Query: 80   LKESSLPDTQMKKPSAGICS---QIEKLVLNKRYREAL-ELFEILEFEGGFDVGSSTYDA 135
            + E+ L   +M  PS  + +    +     N R +EA   L E+L+  GG    + ++ +
Sbjct: 489  IAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQ--GGVLPDALSFTS 546

Query: 136  LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
            ++S+C      +E + +   +L +G+     +   ++ MH RC  +  AR +FDEM   +
Sbjct: 547  VLSSCY---CSQEAQVLRMCILESGYRSAC-LETALISMHGRCRELEQARSVFDEMDHGD 602

Query: 196  LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
            +VS   +++   ++ D+ E   LF  +  E       T AT +        + +GK +H+
Sbjct: 603  VVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHA 662

Query: 256  CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
            C  ++G   ++ V  AL++MYS CG   +A   F+ M  +  V WN + A YA  G ++E
Sbjct: 663  CVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKE 722

Query: 316  ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
            A+ L+  M+  GVK D  TFS  + +    A +   K  H      G   D+   + LV 
Sbjct: 723  AVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLDSDVSVATGLVK 782

Query: 376  FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
             Y+K G++++A  +F       V+  NA+I     HG  EEAV++F +M   G+RP+  T
Sbjct: 783  LYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVAT 842

Query: 436  FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
             ++++SAC  +G+ E G   F +M     I P   HYAC ++LLGR G L+ A  +IR  
Sbjct: 843  LVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKM 902

Query: 496  PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
            PF+    +W +LL  C++ G+ ELG+  A+++  ++P   + +VVL NIY ++GK K+A 
Sbjct: 903  PFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDAD 962

Query: 556  EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
               + L  + ++  P  SW+E+ KQ H F++GD+SH QT EIY  +D++ L + + GY  
Sbjct: 963  VDRKKLLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYVVLDKLELLMRRAGY-- 1020

Query: 616  EEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAM 675
            E    L   DE +++ L YHSE++A+AFGLI T   T L+IV++ R+C DCH A K I+M
Sbjct: 1021 EADKGLDAEDELKEKALGYHSERIAIAFGLIATPPDTTLKIVKNLRVCGDCHTATKYISM 1080

Query: 676  VTGREIVVRDASRFHHFKDGMCSCGDYW 703
            + GREI+VRD+ RFHHF +G CSC D W
Sbjct: 1081 IMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/445 (29%), Positives = 216/445 (48%), Gaps = 18/445 (4%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y AL+ +C+    + + KR    + + G E  L++ N ++ M+VRCG + +A  +F +M 
Sbjct: 28  YTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKME 87

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLD-LWEEFSDCGSRTFATMIRASAGLELISVGK 251
           ERN+VS   +I+    SG +  AF LF   L E  +   S T   M+ A A    +++G+
Sbjct: 88  ERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGR 147

Query: 252 QLHSCALKMGF----GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
            +H+   ++G          V  A+I+MY+KCGS EDA  VF  + EK  V W  +   Y
Sbjct: 148 SIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAY 207

Query: 308 ALH-GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           A    +  +AL ++ EM    +  +  TF   +  CT   SL      H+ L   G G D
Sbjct: 208 AQERRFYPDALRIFREMLLQPLAPNVITFITALGACT---SLRDGTWLHSLLHEAGLGFD 264

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCK---NVISWNALIAGYGNHGRGEEAVELFEQ 423
            +A +AL++ Y K G  E A  VF  M  +   +++SWNA+I+     GR  +A+ +F +
Sbjct: 265 PLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRR 324

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           + L GMRPN VT + +L+A + SG+       F     +       +    +I +  + G
Sbjct: 325 LRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCG 384

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTAC--RVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
               A+ + R   +K     W  +L A   R +    +  F    L G++P K+S ++ +
Sbjct: 385 FFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVS-FIAI 443

Query: 542 LNIYNSSGKL---KEAAEVIRTLRR 563
           LN  ++S  L   ++   +I T RR
Sbjct: 444 LNACSNSEALDFGRKIHSLILTRRR 468



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 159/656 (24%), Positives = 278/656 (42%), Gaps = 62/656 (9%)

Query: 16  IQNSCSFSCSFTANKVL---KGKSLLSGCYFSLDKRKWKRSFQRVECCLMEQGLKPRPKP 72
           I+  CS S +   ++     +  +LL  C  S D  K KR+ + +    +EQ L      
Sbjct: 7   IRQLCSLSGAVRVDRAADLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCL 66

Query: 73  NKIYTE--ELKESSLPDTQMKKPSAGICSQIEKLVLNKR---YREALELFEILEFEGGFD 127
             +Y     L+E+    ++M++ +  + S    +  N +   +  A  LF  +  E    
Sbjct: 67  INMYVRCGSLEEAHAIFSKMEERN--VVSWTALISANAQSGAFARAFALFRTMLLESSAA 124

Query: 128 VGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD----LYMRNRVLLMHVRCGMMID 183
             S T  A+++AC   R +   + + + +   G E +      + N ++ M+ +CG   D
Sbjct: 125 PNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPED 184

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGD-YLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
           A  +F  +PE+++VS   +          Y +A  +F ++  +       TF T + A  
Sbjct: 185 AIAVFLTIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACT 244

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS---EKTTVG 299
            L     G  LHS   + G G +     ALI+MY KCG  E A GVF  M+   E   V 
Sbjct: 245 SLR---DGTWLHSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVS 301

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR-ICTRLASLEHAKQAHAGL 358
           WN +I+     G   +A+ ++  +R  G++ +  T   I+  +         A++ H  +
Sbjct: 302 WNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRI 361

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEA 417
              G+  D+V  +A++  Y+K G    A  VF ++  K +VISWN ++    +     + 
Sbjct: 362 WESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKV 421

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           V  F  MLL G+ PN V+F+A+L+ACS S   + G +I   +    +    +     ++ 
Sbjct: 422 VNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVS 481

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNM-WAALLTACRVNGNLE--LGKFAAEKLYGMEPEK 534
           + G+ G + EA  + +  P  +   + W  +L A   N   +   G        G+ P+ 
Sbjct: 482 MYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDA 541

Query: 535 LSNYVVLLNIYNSSGKLKEAAEVIRT-----------LRRKGLRMLPACSWIEVKKQPHV 583
           LS   VL + Y S     + A+V+R            L    + M   C   E+++   V
Sbjct: 542 LSFTSVLSSCYCS-----QEAQVLRMCILESGYRSACLETALISMHGRCR--ELEQARSV 594

Query: 584 FLSGDQSHVQT--------------KEIYRKVDRMMLEISKHGYVPEEKTLLPDVD 625
           F   D   V +              KE++    RM LE    G +P++ TL   +D
Sbjct: 595 FDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLE----GVIPDKFTLATTLD 646



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 130/565 (23%), Positives = 228/565 (40%), Gaps = 66/565 (11%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I   V   R+ +A+ +F  L  EG      +    L +           ++    +  
Sbjct: 304 AMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWE 363

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER-NLVSCNMIIAGMIDSGDYLEAFL 217
           +G+  D+ + N ++ M+ +CG    A  +F  +  + +++S N ++    D   + +   
Sbjct: 364 SGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVN 423

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCA--LIDM 275
            F  +     D    +F  ++ A +  E +  G+++HS  L     D V  S A  L+ M
Sbjct: 424 TFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRR-RDYVESSVATMLVSM 482

Query: 276 YSKCGSIEDAQGVFDEM--SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           Y KCGSI +A+ VF EM    ++ V WN ++  YA +  S+EA     EM   GV  D  
Sbjct: 483 YGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDAL 542

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           +F+ ++  C      + A+     ++  G+       +AL+  + +   +E AR VFD+M
Sbjct: 543 SFTSVLSSCY---CSQEAQVLRMCILESGY-RSACLETALISMHGRCRELEQARSVFDEM 598

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG------ 447
              +V+SW A+++    +   +E   LF +M L G+ P+  T    L  C  S       
Sbjct: 599 DHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGK 658

Query: 448 -----LSERGWEI------------------FQSMSRDHKIKPRAM-HYACMIELLGREG 483
                ++E G E                    +++S    +K R +  +  M     + G
Sbjct: 659 IIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAG 718

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL---GK----FAAEKLYGMEPEKLS 536
           L  EA  L R    +  K       T   V+G   L   GK     AAE   G++ + +S
Sbjct: 719 LAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAES--GLDSD-VS 775

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKE 596
               L+ +Y   GKL EA  + R           AC W        V L+     +    
Sbjct: 776 VATGLVKLYAKCGKLDEAISLFR----------GACQWTV------VLLNAIIGALAQHG 819

Query: 597 IYRKVDRMMLEISKHGYVPEEKTLL 621
              +  +M  ++ + G  P+  TL+
Sbjct: 820 FSEEAVKMFWKMQQEGVRPDVATLV 844


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/595 (33%), Positives = 343/595 (57%), Gaps = 20/595 (3%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G +    T+   +  C  +  + + + +   +L++    D  +++ +L M+++C  M++A
Sbjct: 106 GVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEA 165

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE-EFSDCGSRTFATMIRASAG 243
           R++F+ M  RN+ S   +I+  + +G++ EA  LF  + + E  +  + TFAT++ A  G
Sbjct: 166 RKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEG 225

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L  +  G+++H      GF  NV V  AL+ MY KCGS  +A+ VFD M+ +  + W ++
Sbjct: 226 LGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSM 285

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           IA YA HG  +EAL+L+  M    V+    +FS  +  C  L +L+  ++ H  +V    
Sbjct: 286 IAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRVVEAHL 342

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
               +  S L+  Y++ G ++DAR VF++M  ++  S NA+IA +  HGR ++A+ ++ +
Sbjct: 343 ASPQMETS-LLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRR 401

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           M   G+  + +TF++VL ACS + L     + FQS+  DH + P   HY CM+++LGR G
Sbjct: 402 MEQEGIPADGITFVSVLVACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSG 461

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
            L +A  L+   P++T    W  LL+ C+ +G+L  G+ AA K++ + P +   YV L N
Sbjct: 462 RLGDAEELVETMPYQTDAVAWMTLLSGCKRHGDLNRGERAARKVFELAPAETLPYVFLSN 521

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           +Y ++ +  +A  V + +  +G+    A S+IE+  + H+F SG +   Q     R ++R
Sbjct: 522 MYAAAKRFDDARRVRKEMEERGVTTPVAVSYIEIDNELHMFTSGGRDEQQEGHDGRTMER 581

Query: 604 ---MMLEI----SKHGYVPEEKTLLPD-----VDEQEQRVLSYHSEKLAVAFGLI---NT 648
              ++LE+     + GYVP+ + +  +      +E++QR L +HSE+LA+A+GLI   + 
Sbjct: 582 VRSLLLELLEPMKQAGYVPDTREVYLEQQGGTSEEEKQRSLCFHSERLAIAYGLIAAKDP 641

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            D  PL++V SHR+C DCH+AIKL++ +  + I VRD +RFHHF+ G CSCGD+W
Sbjct: 642 DDSRPLRVVNSHRVCSDCHSAIKLLSDIIEKTIFVRDGNRFHHFEKGACSCGDHW 696



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 190/355 (53%), Gaps = 6/355 (1%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +L++AC  L+++ E +R+  +++ TGF  D+ +   +L M+ +CG + DA+R+F+ M  +
Sbjct: 15  SLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIK 74

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           +L + + II+    +G    A +L+  +  E  +    TFA  +   A +  ++ G+ +H
Sbjct: 75  DLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIH 134

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
              L      +  +  +L++MY KC  + +A+ VF+ M  +    +  +I+ Y   G   
Sbjct: 135 QRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHA 194

Query: 315 EALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
           EAL+L+  M +   ++ + +TF+ I+     L +LE  ++ H  L   GF  ++V  +AL
Sbjct: 195 EALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNAL 254

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           V  Y K G   +AR VFD M  +NVISW ++IA Y  HG  +EA+ LF++M    + P+ 
Sbjct: 255 VTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM---DVEPSG 311

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           V+F + L+AC+  G  + G EI   +   H   P+      ++ +  R G LD+A
Sbjct: 312 VSFSSALNACALLGALDEGREIHHRVVEAHLASPQM--ETSLLSMYARCGSLDDA 364



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 170/330 (51%), Gaps = 10/330 (3%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I   V    + EALELF  +      +  + T+  ++ A  GL ++ + ++V  ++ S
Sbjct: 182 AMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLAS 241

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF+ ++ ++N ++ M+ +CG  ++AR++FD M  RN++S   +IA     G+  EA  L
Sbjct: 242 RGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNL 301

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F  +  E S     +F++ + A A L  +  G+++H   ++     +  +  +L+ MY++
Sbjct: 302 FKRMDVEPSGV---SFSSALNACALLGALDEGREIHHRVVEAHLA-SPQMETSLLSMYAR 357

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CGS++DA+ VF+ M  +     N +IA +  HG  ++AL +Y  M   G+  D  TF  +
Sbjct: 358 CGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSV 417

Query: 339 IRICTRLASLEHAKQAHAGLV-RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK- 396
           +  C+  + +   +     LV  HG    +     +VD   + GR+ DA  + + M  + 
Sbjct: 418 LVACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQT 477

Query: 397 NVISWNALIAGYGNHG---RGEEAV-ELFE 422
           + ++W  L++G   HG   RGE A  ++FE
Sbjct: 478 DAVAWMTLLSGCKRHGDLNRGERAARKVFE 507



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 162/360 (45%), Gaps = 31/360 (8%)

Query: 236 TMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295
           +++ A   L+ +  G++LH   +  GF  ++ +  AL+ MY+KCGS++DA+ VF+ M  K
Sbjct: 15  SLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIK 74

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
               W++II+ YA  G  E A+ LY  M   GV+ +  TF+  +  C  +A L   +  H
Sbjct: 75  DLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIH 134

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
             ++      D V   +L++ Y K   + +AR VF+ M  +NV S+ A+I+ Y   G   
Sbjct: 135 QRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHA 194

Query: 416 EAVELFEQM-LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR------------- 461
           EA+ELF +M  +  + PN  TF  +L A    G  E+G ++ + ++              
Sbjct: 195 EALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNAL 254

Query: 462 -----------------DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
                            D       + +  MI    + G   EA  L +    + +   +
Sbjct: 255 VTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMDVEPSGVSF 314

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           ++ L AC + G L+ G+    ++             LL++Y   G L +A  V   ++ +
Sbjct: 315 SSALNACALLGALDEGREIHHRVVEAHLASPQMETSLLSMYARCGSLDDARRVFNRMKTR 374



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 126/247 (51%), Gaps = 6/247 (2%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M + G+  D F  + ++  CT+L +LE  ++ H  L+  GF  DI   +AL+  Y+K G 
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           ++DA+ VF+ M  K++ +W+++I+ Y   GRGE AV L+ +M+  G+ PN VTF   L  
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 443 C-SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD--EAFALIRGAPFKT 499
           C S +GL++ G  I Q +      +   +  + +   L  + +++  + F  ++    ++
Sbjct: 121 CASVAGLAD-GRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRS 179

Query: 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
              M +A + A      LEL    + K+  +EP   + +  +L      G L++  +V R
Sbjct: 180 YTAMISAYVQAGEHAEALELFSRMS-KVEAIEPNAYT-FATILGAVEGLGNLEKGRKVHR 237

Query: 560 TLRRKGL 566
            L  +G 
Sbjct: 238 HLASRGF 244


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/601 (33%), Positives = 336/601 (55%), Gaps = 34/601 (5%)

Query: 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL 196
           + AC   +S    K++  +++ TG +    + N ++ M+ +CG++ DA  LF+++P R+ 
Sbjct: 10  LQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDP 69

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHS 255
           +S   I+     +        +F  ++++         FA +++A A L  +  GKQ+H+
Sbjct: 70  ISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHA 129

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
             +     D+  V  +L+DMY+KCG  +  + VFD +S K ++ W  +I+GYA  G   +
Sbjct: 130 TFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLD 189

Query: 316 ALD-------------------------------LYYEMRDSGVKM-DHFTFSMIIRICT 343
           A+                                L+ EMR  G+ + D F  S II    
Sbjct: 190 AIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASA 249

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            LA L   KQ H  ++  G+   +  ++ALVD Y+K   +  A+ +F +M+ ++++SW +
Sbjct: 250 NLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTS 309

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           +I G   HG  EEA+ L+ +ML  G++PN VTF+ ++ ACS  GL  +G   F SM +D+
Sbjct: 310 IIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDY 369

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            I P   HY C+++LL R G L+EA  LI+  PFK  +  WAALL+AC  + N  +G   
Sbjct: 370 GINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRV 429

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
           A+ L  ++PE  S Y++L NIY S+   +  ++V R +    ++  P  S I + K+  V
Sbjct: 430 ADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKESQV 489

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVA 642
           FL+G+ SH   +EI+  ++ +  E+ K GY+P+  ++L D+++QE +R L +HSE+LAVA
Sbjct: 490 FLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLAVA 549

Query: 643 FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           +GL+       L IV++ R+C DCH  +K I+++  REIVVRDA+R+HHFKDG CSC ++
Sbjct: 550 YGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCNNF 609

Query: 703 W 703
           W
Sbjct: 610 W 610



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 198/409 (48%), Gaps = 49/409 (11%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
            L +F  +  + G       +  L+ AC  L ++++ K+V +  + +    D  +++ ++
Sbjct: 88  TLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVVKSSLV 147

Query: 173 LMHVRCGMMIDARRLFDEMPE-------------------------------RNLVSCNM 201
            M+ +CG+    R +FD +                                 +NL+S   
Sbjct: 148 DMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRKLDAIQLFQKMPVKNLLSWTA 207

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSD-CGSRTFATMIRASAGLELISVGKQLHSCALKM 260
           +I+G++ SG+++++F LF+++  +  D       +++I ASA L ++ +GKQ+H   + +
Sbjct: 208 LISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILL 267

Query: 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY 320
           G+  ++FVS AL+DMY+KC  +  A+ +F  M ++  V W +II G A HG +EEAL LY
Sbjct: 268 GYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLY 327

Query: 321 YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSK 379
             M  +G+K +  TF  +I  C+ +  +   +     +++ +G    +   + L+D  S+
Sbjct: 328 NRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSR 387

Query: 380 WGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
            G +E+A ++   M  K +  +W AL++   +H      + + + +L   ++P   +   
Sbjct: 388 SGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGIRVADHLL--SLKPEDPSTYI 445

Query: 439 VLSACSRSGLSERGWEIFQSMSR-----DHKIKPRAMHYACMIELLGRE 482
           +LS    S      WE    + R     + K +P    Y+C++  LG+E
Sbjct: 446 LLSNIYASAAM---WESVSKVRRLMAAMEVKKEPG---YSCIV--LGKE 486



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 93/196 (47%), Gaps = 1/196 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I  LV +  + ++  LF  +  +G   V      ++I A   L  +   K++   ++  G
Sbjct: 209 ISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGASANLAVLGLGKQIHCLVILLG 268

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           +E  L++ N ++ M+ +C  ++ A+++F  M +R++VS   II G    G   EA  L+ 
Sbjct: 269 YESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYN 328

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSCALIDMYSKC 279
            +          TF  +I A + + L+S G+   +  +K  G   ++     L+D+ S+ 
Sbjct: 329 RMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRS 388

Query: 280 GSIEDAQGVFDEMSEK 295
           G +E+A+ +   M  K
Sbjct: 389 GHLEEAENLIKAMPFK 404


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/581 (34%), Positives = 333/581 (57%), Gaps = 2/581 (0%)

Query: 125  GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
            G  V   T+ + ++AC       + + +   ++ +G   +  + N ++ M+ + G M  +
Sbjct: 458  GKSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTS 517

Query: 185  RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRAS-AG 243
            RR+  +MP R++V+ N +I G  ++ D  +A   F  L  E       T  +++ A    
Sbjct: 518  RRVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVP 577

Query: 244  LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
             +L+  GK LH+  +  GF  +  V  +LI MY+KCG +  +Q +F+ +  ++ + WN I
Sbjct: 578  GDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAI 637

Query: 304  IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
            +A  A HG+ EE L L  +MR  G+ +D F+FS  +    +LA LE  +Q H   V+ GF
Sbjct: 638  LAANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGF 697

Query: 364  GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             LD    +A  D YSK G I +   +    + +++ SWN LI+  G HG  EE  E F +
Sbjct: 698  ELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCETFHE 757

Query: 424  MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
            ML  G++P HVTF+++L+ACS  GL ++G   +  +++D  ++P   H  C+I+LLGR G
Sbjct: 758  MLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDLLGRSG 817

Query: 484  LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
             L EA   I   P K    +W +LL +C+++ +L+ G+ AAE L  +EPE  S +V+  N
Sbjct: 818  RLAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVFVLSSN 877

Query: 544  IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
            ++ ++G+ ++   V + +  K ++   ACSW+++K +   F  GD++H QT EIY K++ 
Sbjct: 878  MFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLED 937

Query: 604  MMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
            +   I + GYV +    L D D EQ++  L  HSE+LA+A+ L++T + + ++I ++ RI
Sbjct: 938  IKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLRI 997

Query: 663  CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            C DCH+  K ++ V GR IV+RD  RFHHF+ G+CSC DYW
Sbjct: 998  CSDCHSVYKFVSRVIGRRIVLRDQYRFHHFESGLCSCKDYW 1038



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 188/344 (54%), Gaps = 2/344 (0%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSI-REVKRVFSYMLSTGFEPDLYMR 168
           Y E +E F+ +  + G    S    +L++AC    S+ RE  +V  ++  +G   D+Y+ 
Sbjct: 140 YLEGMEFFQKM-CDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVS 198

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
             +L ++   G++  +R++F+EMP+RN+VS   ++ G  D G+  E   ++  +  E  +
Sbjct: 199 TAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVE 258

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
           C   + + +I +   L+  S+G+Q+    +K G    + V  +LI M+   G+++ A  +
Sbjct: 259 CNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYI 318

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F+++SE+ T+ WN+I+A YA +G+ EE+  ++  MR    +++  T S ++ +   +   
Sbjct: 319 FNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQ 378

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
           +  +  H  +V+ GF   +   + L+  Y+  GR E+A  VF +M  K++ISWN+L+A +
Sbjct: 379 KWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASF 438

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
            N GR  +A+ +   M+  G   N+VTF + L+AC      ++G
Sbjct: 439 VNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDKG 482



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 178/343 (51%), Gaps = 4/343 (1%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           E +++++ +  EG  +   ++   +IS+C  L+     +++   ++ +G E  L + N +
Sbjct: 244 EVIDIYKSMRGEG-VECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVENSL 302

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD-CG 230
           + M    G +  A  +F+++ ER+ +S N I+A    +G   E+  +F +L   F D   
Sbjct: 303 ISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIF-NLMRRFHDEVN 361

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           S T +T++     ++    G+ +H   +KMGF   V V   L+ MY+  G  E+A  VF 
Sbjct: 362 STTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFK 421

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           +M  K  + WN+++A +   G S +AL +   M  +G  +++ TF+  +  C      + 
Sbjct: 422 QMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEFFDK 481

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            +  H  +V  G   + +  +ALV  Y K G +  +R V  +M  ++V++WNALI GY  
Sbjct: 482 GRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAE 541

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG-LSERG 452
           +   ++A+  F+ + + G+  N++T ++VLSAC   G L ERG
Sbjct: 542 NEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERG 584



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 142/275 (51%), Gaps = 1/275 (0%)

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N ++ M+ + G +  AR LFD+MP RN VS N +++G++  G YLE    F  + +    
Sbjct: 97  NTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIK 156

Query: 229 CGSRTFATMIRASA-GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
             S   A+++ A      +   G Q+H    K G   +V+VS A++ +Y   G +  ++ 
Sbjct: 157 PSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRK 216

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           VF+EM ++  V W +++ GY+  G  EE +D+Y  MR  GV+ +  + S++I  C  L  
Sbjct: 217 VFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKD 276

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
               +Q    +++ G    +   ++L+  +   G ++ A ++F+++  ++ ISWN+++A 
Sbjct: 277 ESLGRQIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAA 336

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           Y  +G  EE+  +F  M       N  T   +LS 
Sbjct: 337 YAQNGHIEESSRIFNLMRRFHDEVNSTTVSTLLSV 371



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 148/300 (49%), Gaps = 11/300 (3%)

Query: 221 DLWEEFSDCGSRT-FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
           D W     C  +T F+ + R + G       + LH+  +K     +V  +  LI+MY+K 
Sbjct: 54  DHWNPELSCFDQTGFSQITRETTG-------RALHALCVKGLVRLSVLHTNTLINMYTKF 106

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           G ++ A+ +FD+M  +  V WNT+++G    G   E ++ + +M D G+K   F  + ++
Sbjct: 107 GRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLV 166

Query: 340 RICTRLASL-EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
             C R  S+     Q H  + + G   D+  ++A++  Y  +G +  +R VF++M  +NV
Sbjct: 167 TACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNV 226

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +SW +L+ GY + G  EE +++++ M   G+  N  +   V+S+C        G +I   
Sbjct: 227 VSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQ 286

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           + +       A+  + +I + G  G +D A  +      + T + W +++ A   NG++E
Sbjct: 287 VIKSGLESKLAVENS-LISMFGNMGNVDYANYIFNQISERDTIS-WNSIVAAYAQNGHIE 344


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/589 (35%), Positives = 333/589 (56%), Gaps = 36/589 (6%)

Query: 130 SSTYDALISA---CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186
           ++TY+ L++      GL  + + +R+F  +      PD    N +L  H  CG +  ARR
Sbjct: 43  TTTYNCLLAGYAKASGLIRLADARRLFDSIP----HPDTVSYNTLLSCHFACGDIDGARR 98

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           +F  MP +++ S N +++G+  +G   EA  +F  +        + ++  M+ A A    
Sbjct: 99  VFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVR----NAVSWNAMVAALA---- 150

Query: 247 ISVGKQLHSCALKMGFGDNVFVSC----------ALIDMYSKCGSIEDAQGVFDEMSEKT 296
                    C+  MG  +++F +           A++  Y   G+++ A   F  M  + 
Sbjct: 151 ---------CSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRN 201

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
            V WN ++AGY  +  +++AL ++  M  DS V+ +  T S ++  C+ L++L   +Q H
Sbjct: 202 LVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVH 261

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
              ++     ++   ++L+  Y K G + DA  VFD+M  K++++WNA+I+GY  HG G 
Sbjct: 262 QWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGM 321

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
           +A++LFE+M   G+ P+ +T LAVL+AC  +GL + G + F++M   +KI+P+  HY+CM
Sbjct: 322 QAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCM 381

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535
           ++LL R GLL+ A  +I   PF+   + +  LLTACRV  NLE  +FAA KL   +P+  
Sbjct: 382 VDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNA 441

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTK 595
             YV L NIY  + K  + + V R ++   +   P  SW+E+K   H F S D+ H Q  
Sbjct: 442 GAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLG 501

Query: 596 EIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPL 654
            I+ K+DR+ + +   GYVP+    L DV D  + ++L  HSEKLA+AFGLI+TS    L
Sbjct: 502 LIHDKLDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLMRHSEKLAIAFGLISTSPGMTL 561

Query: 655 QIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +I ++ RIC DCHNA KLI+ +  REI++RD +RFHHF+ G CSCGDYW
Sbjct: 562 RIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 610



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 104/286 (36%), Gaps = 87/286 (30%)

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           G +  A+  F     KTT  +N ++AGYA               + SG          +I
Sbjct: 26  GDLAGAEEAFASTQLKTTTTYNCLLAGYA---------------KASG----------LI 60

Query: 340 RICTR---LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
           R+        S+ H               D V+ + L+  +   G I+ AR VF  M  K
Sbjct: 61  RLADARRLFDSIPHP--------------DTVSYNTLLSCHFACGDIDGARRVFSTMPVK 106

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           +V SWN +++G   +G  EEA  +F  M +                              
Sbjct: 107 DVTSWNTMVSGLSKNGASEEAAAMFRIMPVRN---------------------------- 138

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
                       A+ +  M+  L   G +  A  L R AP KT   +W A+++     GN
Sbjct: 139 ------------AVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGN 186

Query: 517 LELGKFAAEKLYGMEP-EKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           ++     A + +G  P   L ++  ++  Y  + +  +A  V +T+
Sbjct: 187 VQ----KAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTM 228



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 65/125 (52%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +   V N R  +AL +F+ +  +      +ST  +++  C  L ++   ++V  + +   
Sbjct: 209 VAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLP 268

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              ++ +   +L M+ +CG + DA ++FDEM  +++V+ N +I+G    G  ++A  LF 
Sbjct: 269 LSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFE 328

Query: 221 DLWEE 225
            + +E
Sbjct: 329 KMKDE 333


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/581 (34%), Positives = 329/581 (56%), Gaps = 5/581 (0%)

Query: 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186
           ++   T+ + ++AC+        K +  +++  G + +L + N ++  + +C  M +A++
Sbjct: 359 EINYVTFTSALAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKK 418

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL-- 244
           +F  MP+ + V+ N +I G  ++ +  EA   F  L  E S  G      +    + L  
Sbjct: 419 VFQRMPKLDKVTWNALIGGFANNAELNEAVAAF-KLMREGSTSGVDYITIVNILGSCLTH 477

Query: 245 -ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
            +LI  G  +H+  +  GF  +  V  +LI MY+KCG +  +  +FD++  KT+  WN I
Sbjct: 478 EDLIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAI 537

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           IA  A +G+ EEAL L   MR +G++ D F FS  + +   LA LE  +Q H   ++ GF
Sbjct: 538 IAANARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGF 597

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
            LD    +A +D Y K G ++DA  +  +   ++ +SWN LI+    HG+  +A E F  
Sbjct: 598 ELDHFIINAAMDMYGKCGELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFHD 657

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           ML  G++PNHV+F+ +LSACS  GL + G   + SM+  + I+P   H  CMI+LLGR G
Sbjct: 658 MLKLGVKPNHVSFVCLLSACSHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSG 717

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
            L EA A I   P      +W +LL +CR+  NL+LG+ AA+ L  ++P   S YV+  N
Sbjct: 718 RLVEAEAFITEMPIPPNDLVWRSLLASCRIYRNLDLGRKAAKHLLELDPSDDSAYVLYSN 777

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           ++ + G+ ++  +V   +    ++  PA SW++ K    +F  GDQ+H Q ++I  K+  
Sbjct: 778 VFATIGRWEDVEDVRGQMGAHKIQKKPAHSWVKWKGNISIFGMGDQTHPQMEQINGKLLG 837

Query: 604 MMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
           +M  + + GYVP+    L D D EQ++  +  HSE++A+AFGLIN  + + ++I ++ R+
Sbjct: 838 LMKIVGEAGYVPDTSYSLQDTDEEQKEHNMWSHSERIALAFGLINIPEGSTVRIFKNLRV 897

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH+  K ++ V GR+IV+RD  RFHHF +G CSC DYW
Sbjct: 898 CGDCHSFFKFVSGVLGRKIVLRDPYRFHHFTNGNCSCSDYW 938



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 204/415 (49%), Gaps = 6/415 (1%)

Query: 135 ALISACIGLRSI--REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           +L++AC    SI  +E  +   + +  G   D+++    +  +   G++ +A+++F+EMP
Sbjct: 63  SLVTAC-NKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMP 121

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
           +RN+VS   ++    D+G   E    +  +  E   C     A +I +   L  I +G Q
Sbjct: 122 DRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQ 181

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           L   ALK G    V  + +LI M+  CG I +A  +F+EM+E+ T+ WN+II+  A +  
Sbjct: 182 LLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTL 241

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            EE+   ++ MR    ++++ T S+++ IC  +  L+  K  H   V++G   +I   + 
Sbjct: 242 HEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNT 301

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+  YS  GR +DA  +F +M  +++ISWN+++A Y   GR   A+++F +ML      N
Sbjct: 302 LLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEIN 361

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
           +VTF + L+AC        G +I         ++   +    +I   G+   + EA  + 
Sbjct: 362 YVTFTSALAACLDPEFFTNG-KILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVF 420

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           +  P K  K  W AL+     N  L     AA KL         +Y+ ++NI  S
Sbjct: 421 QRMP-KLDKVTWNALIGGFANNAELN-EAVAAFKLMREGSTSGVDYITIVNILGS 473



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 117/437 (26%), Positives = 205/437 (46%), Gaps = 17/437 (3%)

Query: 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186
           ++  +T   L+S C  +  ++  K V    +  G E ++ + N +L ++   G   DA  
Sbjct: 258 EINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAEL 317

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           +F  MPER+L+S N ++A  +  G  L A  +F ++     +    TF + + A    E 
Sbjct: 318 IFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEF 377

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
            + GK LH   + +G  D + +   LI  Y KC  + +A+ VF  M +   V WN +I G
Sbjct: 378 FTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGG 437

Query: 307 YALHGYSEEALDLYYEMRDSGVK-MDHFTFSMIIRIC-TRLASLEHAKQAHAGLVRHGFG 364
           +A +    EA+  +  MR+     +D+ T   I+  C T    +++    HA  V  GF 
Sbjct: 438 FANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPIHAHTVVTGFD 497

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
           LD    S+L+  Y+K G +  + ++FD+++ K    WNA+IA    +G GEEA++L  +M
Sbjct: 498 LDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVRM 557

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR-----DHKIKPRAMHYACMIELL 479
              G+  +   F   LS  +   + E G ++  S  +     DH I   AM      ++ 
Sbjct: 558 RSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKLGFELDHFIINAAM------DMY 611

Query: 480 GREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL--YGMEPEKLSN 537
           G+ G LD+A  ++   P   ++  W  L++    +G     K     +   G++P  +S 
Sbjct: 612 GKCGELDDALRILP-QPTDRSRLSWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVS- 669

Query: 538 YVVLLNIYNSSGKLKEA 554
           +V LL+  +  G + E 
Sbjct: 670 FVCLLSACSHGGLVDEG 686



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 135/271 (49%), Gaps = 1/271 (0%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRT 233
           M+ + G +  A+ +FD M ERN  S N +++G +  G Y+EA L F D+           
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 234 FATMIRASAGLELISV-GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
            A+++ A     +++  G Q H  A+K G   +VFV  + +  Y+  G + +AQ +F+EM
Sbjct: 61  IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            ++  V W +++  Y+ +G  +E ++ Y  MR  G+  +    +++I  C  L  +    
Sbjct: 121 PDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGH 180

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
           Q     ++ G    + A ++L+  +   G I +A  +F++M  ++ ISWN++I+    + 
Sbjct: 181 QLLGHALKFGLETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNT 240

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
             EE+   F  M L     N+ T   +LS C
Sbjct: 241 LHEESFRYFHWMRLVHEEINYTTLSILLSIC 271



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 13/146 (8%)

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           YSK+GRI  A+ VFD+M  +N  SWN +++GY   G   EAV  F  +   G++P+    
Sbjct: 2   YSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMI 61

Query: 437 LAVLSACSRS------GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
            ++++AC++S      G    G+ I   +  D  +    +H+          G++  A  
Sbjct: 62  ASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHF------YASYGIVSNAQK 115

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGN 516
           +    P +   + W +L+ +   NG+
Sbjct: 116 MFNEMPDRNVVS-WTSLMVSYSDNGS 140



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 48/232 (20%), Positives = 101/232 (43%), Gaps = 8/232 (3%)

Query: 79  ELKESSLPDTQMKKPSAGICSQIEKLVLNKRY---REALELFEILEFEGGFDVGSSTYDA 135
           +L  SS    Q+   ++ + + I  +  N RY    EAL+L   +    G +     +  
Sbjct: 515 DLHSSSYIFDQLVFKTSSVWNAI--IAANARYGFGEEALKLVVRMR-SAGIEFDQFNFST 571

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
            +S    L  + E +++    +  GFE D ++ N  + M+ +CG + DA R+  +  +R+
Sbjct: 572 ALSVAADLAMLEEGQQLHGSTIKLGFELDHFIINAAMDMYGKCGELDDALRILPQPTDRS 631

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
            +S N +I+     G + +A   F D+ +        +F  ++ A +   L+  G   ++
Sbjct: 632 RLSWNTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLSACSHGGLVDEGLAYYA 691

Query: 256 CALKM-GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIA 305
               + G    +     +ID+  + G + +A+    EM      + W +++A
Sbjct: 692 SMTSVYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITEMPIPPNDLVWRSLLA 743


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/648 (33%), Positives = 353/648 (54%), Gaps = 65/648 (10%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           REA ++F+ +      +    +++ L+S  I  R I E + VF  M     E ++     
Sbjct: 65  REARQMFDEMP-----ERNIVSWNGLVSGYIKNRMIEEARNVFEIMP----ERNVVSWTA 115

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF----------- 219
           ++  +V+ GM+++A  LF  MPERN VS  ++  G+ID G   +A  L+           
Sbjct: 116 MVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLYDMMPGKDVVAS 175

Query: 220 ----------------LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC------- 256
                            ++++E  +    T+ TMI      + + V ++L          
Sbjct: 176 TNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTEV 235

Query: 257 ---ALKMGF--------GDNVF--------VSC-ALIDMYSKCGSIEDAQGVFDEMSEKT 296
              ++ +G+         +  F        ++C A+I    + G I  A+ VFD+M ++ 
Sbjct: 236 SWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRD 295

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
              W  +I  Y   G+  EAL+L+ +M+  GV+    +   I+ +C  LASL++ +Q HA
Sbjct: 296 NATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISILSVCATLASLQYGRQVHA 355

Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
            LVR  F  D+   S L+  Y K G +  A+ VFD+   K++I WN++I+GY +HG GEE
Sbjct: 356 HLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEE 415

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
           A+++F +M L+G  PN VT +A+L+ACS  G  E G EIF+SM     + P   HY+C +
Sbjct: 416 ALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTV 475

Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
           ++LGR G +D+A  LI     K    +W ALL AC+ +  L+L + AA+KL+ +EPE   
Sbjct: 476 DMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFEIEPENAG 535

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD-QSHVQTK 595
            Y++L +I  S  K  + AE+ + +R K +   P CSWIEV K+ H+F  G  ++H +  
Sbjct: 536 PYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGKKVHMFTRGGIRNHPEQA 595

Query: 596 EIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPL 654
            I   +++    + + GY P+   +L DVDE+E+   LS HSE+LAVA+GL+   +  P+
Sbjct: 596 MILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPI 655

Query: 655 QIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           +++++ R+C DCH AIKLI+ VT REI++RDA+RFHHF +G CSC DY
Sbjct: 656 RVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRDY 703



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 123/296 (41%), Gaps = 60/296 (20%)

Query: 273 IDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332
           I   S+ G I +A+  FD +  K    WN+I++GY  +G   EA  ++ EM +       
Sbjct: 24  ISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPER------ 77

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
                                            +IV+ + LV  Y K   IE+AR+VF+ 
Sbjct: 78  ---------------------------------NIVSWNGLVSGYIKNRMIEEARNVFEI 104

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           M  +NV+SW A++ GY   G   EA  LF +M       N V++  +       G  +  
Sbjct: 105 MPERNVVSWTAMVKGYVQEGMVVEAELLFWRM----PERNEVSWTVMFGGLIDGGRIDDA 160

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA---FALIRGAPFKTTKNMWAALLT 509
            +++  M     +         MI  L REG +DEA   F  +R     T    W  ++T
Sbjct: 161 RKLYDMMPGKDVVAS-----TNMIGGLCREGRVDEAREIFDEMRERNVIT----WTTMIT 211

Query: 510 ACRVNGNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
               N  +++    A KL+ + PEK   ++  +L  Y  SG++++A E    +  K
Sbjct: 212 GYGQNKRVDV----ARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMK 263



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 97/205 (47%), Gaps = 25/205 (12%)

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
           V NS  +   S+ G+I +AR  FD +  K + SWN++++GY  +G   EA ++F++M   
Sbjct: 18  VNNSFEISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEM--- 74

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
               N V++  ++S   ++ + E    +F+ M   + +      +  M++   +EG++ E
Sbjct: 75  -PERNIVSWNGLVSGYIKNRMIEEARNVFEIMPERNVVS-----WTAMVKGYVQEGMVVE 128

Query: 488 AFALIRGAPFKTTKN---MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           A  L    P +   +   M+  L+   R++         A KLY M P K  + V   N+
Sbjct: 129 AELLFWRMPERNEVSWTVMFGGLIDGGRIDD--------ARKLYDMMPGK--DVVASTNM 178

Query: 545 YNS---SGKLKEAAEVIRTLRRKGL 566
                  G++ EA E+   +R + +
Sbjct: 179 IGGLCREGRVDEAREIFDEMRERNV 203


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/715 (32%), Positives = 355/715 (49%), Gaps = 104/715 (14%)

Query: 88  TQMKKPSAGICSQIEKLVLNKRYR-EALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           + ++ P+  IC+ + K  + +    +A+ +++ +  E      + TY  L  +C    SI
Sbjct: 84  SHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFM-LESNVAADNYTYPILFQSC----SI 138

Query: 147 R----EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD------------- 189
           R    + K +  ++L  GF+ D+Y++N ++ M+  CG + DAR++FD             
Sbjct: 139 RLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSM 198

Query: 190 ------------------EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL-------WE 224
                              MPERN+++ N +I      G+  EA  LF ++       W 
Sbjct: 199 LAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWS 258

Query: 225 EFSDCGSRT------------------------FATMIRASAGLELISVGKQLHSCALKM 260
               C  +                           +++ A + L ++  GK +H   +K+
Sbjct: 259 ALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKV 318

Query: 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA------------ 308
           G    V +  ALI MYS C  +  AQ +F E      + WN++I+GY             
Sbjct: 319 GIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALF 378

Query: 309 --------------LHGYSE-----EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
                         + GY++     E L L+ EM+  G K D      +I  CT LA+L+
Sbjct: 379 DSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALD 438

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             K  HA + ++G  ++I+  + L++ Y K G +EDA  VF  +  K V +WNALI G  
Sbjct: 439 QGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLA 498

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            +G  +++++ F +M  +G+ PN +TF+AVL AC   GL + G   F SM ++HKI P  
Sbjct: 499 MNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNI 558

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HY CM++LLGR G+L EA  LI   P     + W ALL AC+  G+ E G+    KL  
Sbjct: 559 KHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVE 618

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           + P+     V+L NIY S G   +  EV   +R+ G+   P CS IE   + H FL+GD+
Sbjct: 619 LHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDK 678

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINT 648
           +H Q + I   +D M  ++   GY P+ + +  D+DE+E+   L  HSEKLA+AFGLI  
Sbjct: 679 THPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAI 738

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              TP++IV++ RIC DCH A KLI+    REIVVRD  RFHHFK G CSC DYW
Sbjct: 739 DPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 151/305 (49%), Gaps = 43/305 (14%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI--DARRLFDEMPERNLVSCNM 201
           ++I++  ++ S M+ +GF  D +  +R+L        +    + ++F  +   N   CN 
Sbjct: 37  QNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGFICNT 96

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV-GKQLHSCALKM 260
           ++ G +      +A  ++  + E      + T+  + + S  + L    GK +    LK+
Sbjct: 97  MMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQ-SCSIRLAEFDGKCIQDHVLKV 155

Query: 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY 320
           GF  +V++   LI+MY+ CG++ DA+ VFD  S    V WN+++AGY L G  EEA D+Y
Sbjct: 156 GFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVY 215

Query: 321 YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380
             M +                                        +++A+++++  + K 
Sbjct: 216 DRMPER---------------------------------------NVIASNSMIVLFGKK 236

Query: 381 GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
           G +E+A  +F++M  K+++SW+ALI+ Y  +   EEA+ LF++M  NG+  + V  L+VL
Sbjct: 237 GNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVL 296

Query: 441 SACSR 445
           SACSR
Sbjct: 297 SACSR 301



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 117/246 (47%), Gaps = 13/246 (5%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCG--SIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
            Q+ S  +  GF  + F +  L+   ++    +I  +  +F  +        NT++ GY 
Sbjct: 43  NQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGFICNTMMKGYM 102

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT-RLASLEHAKQAHAGLVRHGFGLDI 367
                 +A+ +Y  M +S V  D++T+ ++ + C+ RLA  +  K     +++ GF  D+
Sbjct: 103 QRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFD-GKCIQDHVLKVGFDSDV 161

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              + L++ Y+  G + DAR VFD     +++SWN+++AGY   G  EEA +++++M   
Sbjct: 162 YIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRM--- 218

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
               N +   +++    + G  E   ++F  M +   +      ++ +I    +  + +E
Sbjct: 219 -PERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVS-----WSALISCYEQNEMYEE 272

Query: 488 AFALIR 493
           A  L +
Sbjct: 273 ALILFK 278



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/236 (20%), Positives = 109/236 (46%), Gaps = 3/236 (1%)

Query: 81  KESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISAC 140
           K  +L D+   K +    + I       R+ E L LF+ ++ EG      +   ++ISAC
Sbjct: 373 KARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGT-KPDETILVSVISAC 431

Query: 141 IGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCN 200
             L ++ + K + +Y+   G + ++ +   ++ M+++ G + DA  +F  + E+ + + N
Sbjct: 432 THLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWN 491

Query: 201 MIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG-KQLHSCALK 259
            +I G+  +G   ++   F ++ E        TF  ++ A   + L+  G +  +S   +
Sbjct: 492 ALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQE 551

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYSE 314
              G N+     ++D+  + G +++A+ + + M     V  W  ++     +G +E
Sbjct: 552 HKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNE 607


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/606 (32%), Positives = 334/606 (55%), Gaps = 34/606 (5%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  LI A   + S+   + +    + +    D+++ N ++  +  CG +  A ++F  +
Sbjct: 135 TFPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTI 194

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            E+++VS N +I G +  G   +A  LF  +  E       T   ++ A A +  +  G+
Sbjct: 195 KEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGR 254

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL-- 309
           ++ S   +     N+ ++ A++DMY+KCGSIEDA+ +FD M EK  V W T++ GYA+  
Sbjct: 255 RVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISE 314

Query: 310 -----------------------------HGYSEEALDLYYEMR-DSGVKMDHFTFSMII 339
                                        +G   EAL +++E++    +K++  T    +
Sbjct: 315 DYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTL 374

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
             C ++ +LE  +  H+ + ++G  ++    SAL+  YSK G +E AR VF+ +  ++V 
Sbjct: 375 SACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVF 434

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
            W+A+I G   HG G EAV++F +M    ++PN VTF  V  ACS +GL +    +F  M
Sbjct: 435 VWSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKM 494

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
              + I P   HYAC++++LGR G L++A   I   P   + ++W ALL AC+++ NL L
Sbjct: 495 ESSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSL 554

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
            + A  +L  +EP     +V+L NIY  SGK    +E+ + +R  GL+  P CS IE+  
Sbjct: 555 AEMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDG 614

Query: 580 QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE--QRVLSYHSE 637
             H FLSGD +H  ++++Y K+  +M ++  +GY PE   +L  ++E+E  ++ L+ HSE
Sbjct: 615 MIHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSE 674

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+ +GLI+T     ++++++ R+C DCH   KLI+ +  REI+VRD  RFHHF++G C
Sbjct: 675 KLAICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQC 734

Query: 698 SCGDYW 703
           SC D+W
Sbjct: 735 SCNDFW 740



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/449 (26%), Positives = 220/449 (48%), Gaps = 47/449 (10%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM--MIDARRLFDEMP 192
           +LI  C    S+R++K+  ++M+ TG   D Y  +++  +        +  AR++FDE+P
Sbjct: 36  SLIDRC---SSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDEIP 92

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC--GSRTFATMIRASAGLELISVG 250
           + N  + N +I       D + +   FLD+    S C     TF  +I+A+A +  +S+G
Sbjct: 93  QPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLSLG 152

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           + LH  A+K   G +VFV+ +LI  Y  CG ++ A  VF  + EK  V WN++I G+   
Sbjct: 153 QSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQK 212

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G  ++AL+L+ +M    VK  H T   ++  C ++  LE  ++  + +  +   +++   
Sbjct: 213 GSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLA 272

Query: 371 SALVDFYSKWGRIEDARHVFD-------------------------------KMLCKNVI 399
           +A++D Y+K G IEDA+ +FD                                M  K+++
Sbjct: 273 NAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIV 332

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLN-GMRPNHVTFLAVLSACSRSGLSERG-WEIFQ 457
           +WNALI+ Y  +G+  EA+ +F ++ L   ++ N +T ++ LSAC++ G  E G W    
Sbjct: 333 AWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRW--IH 390

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
           S  + + IK      + +I +  + G L++A  +      K    +W+A++    ++G  
Sbjct: 391 SYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVE-KRDVFVWSAMIGGLAMHG-- 447

Query: 518 ELGKFAAEKLYGMEPEKL-SNYVVLLNIY 545
             G  A +  Y M+   +  N V   N++
Sbjct: 448 -CGSEAVDMFYKMQEANVKPNGVTFTNVF 475



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/209 (20%), Positives = 96/209 (45%), Gaps = 6/209 (2%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N +  EAL +F  L+ +    +   T  + +SAC  + ++   + + SY+   G + + Y
Sbjct: 344 NGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHSYIKKNGIKMNFY 403

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + + ++ M+ +CG +  AR +F+ + +R++   + +I G+   G   EA  +F  + E  
Sbjct: 404 VTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSEAVDMFYKMQEAN 463

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG---DNVFVSCALIDMYSKCGSIE 283
                 TF  +  A +   L+   + L    ++  +G   ++   +C ++D+  + G +E
Sbjct: 464 VKPNGVTFTNVFCACSHTGLVDEAESLFY-KMESSYGIVPEDKHYAC-IVDVLGRSGYLE 521

Query: 284 DAQGVFDEMS-EKTTVGWNTIIAGYALHG 311
            A    + M    +T  W  ++    +H 
Sbjct: 522 KAVKFIEAMPIPPSTSVWGALLGACKIHA 550


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/528 (37%), Positives = 315/528 (59%), Gaps = 6/528 (1%)

Query: 179 GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMI 238
           G + DA  LF++MP RN++S   +I G+  +G   EA ++F  +   F    S T A  +
Sbjct: 188 GRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLASF-KATSSTLACAL 246

Query: 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV 298
            A A +    +G Q+H   +K G+  N ++S +LI  Y+ C  I++A  +F++   +  V
Sbjct: 247 TACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVV 306

Query: 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
            W  ++ GY L+    +AL ++  M    V  +  + +  +  C  L +++  ++ HA  
Sbjct: 307 VWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHA-- 364

Query: 359 VRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
           V H  GL  DI  +++LV  Y+K G I D   VF +M  KNV+SWN++I G   HG G  
Sbjct: 365 VAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRW 424

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
           A+ LF QM+   + P+ +T   +LSAC  SG+  +G   F+   ++  I+    HY+ M+
Sbjct: 425 ALTLFAQMIRTRVDPDEITLAGLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMV 484

Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
           +LLGR G L+EA ALI   P K    +W ALL++   + N+ + + AA+ +  ++P   +
Sbjct: 485 DLLGRYGQLEEAEALIHIMPGKANYMVWLALLSSSINHSNVHVAERAAKCVLDLQPNCSA 544

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKE 596
            Y +L N+Y S+GK  E +++ + ++ +G+   P  SWI +K   H F+SGDQSH  +++
Sbjct: 545 AYTLLSNLYASTGKWTEVSKIRKKMKDEGILKQPGSSWITIKGIKHNFISGDQSHPLSRK 604

Query: 597 IYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQ 655
           IY+K++ +  ++ + GYVP+ K    DV+ EQ++ +LSYHSE+LA+ FGLI+T + + + 
Sbjct: 605 IYQKLEWLGGKLKELGYVPDPKFSFHDVETEQKEEMLSYHSERLAIGFGLISTVEGSTII 664

Query: 656 IVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++++ RIC DCHNA+KL + V GREIVVRD SRFHHF +G CSCGDYW
Sbjct: 665 VMKNLRICGDCHNAVKLTSKVVGREIVVRDPSRFHHFHNGTCSCGDYW 712



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 157/326 (48%), Gaps = 26/326 (7%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I  L  N R  EAL +F   +    F   SST    ++AC  + +     ++   ++ 
Sbjct: 210 SVIGGLDHNGRSFEALVVFH--KMLASFKATSSTLACALTACANICTPFIGVQIHGLIVK 267

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           TG+  + Y+   ++  +  C ++ +A  +F++   RN+V    ++ G   +  + +A  +
Sbjct: 268 TGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQV 327

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F  +          +  + + +  GLE +  G+++H+ A K+G   ++FVS +L+ MY+K
Sbjct: 328 FKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVVMYTK 387

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG I D   VF  MS K  V WN+II G A HG+   AL L+ +M  + V  D  T + +
Sbjct: 388 CGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEITLAGL 447

Query: 339 IRICTRLASLEHAKQAHAGLVRHG----------FGLDIVAN--SALVDFYSKWGRIEDA 386
           +  C            H+G++  G          FG+++     S++VD   ++G++E+A
Sbjct: 448 LSAC-----------GHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEA 496

Query: 387 RHVFDKMLCK-NVISWNALIAGYGNH 411
             +   M  K N + W AL++   NH
Sbjct: 497 EALIHIMPGKANYMVWLALLSSSINH 522



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 136/348 (39%), Gaps = 85/348 (24%)

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N +L  H+R G + +AR LF++M    +    M+I G  D G   +A  LF ++  +   
Sbjct: 54  NYLLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVK--- 110

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
                           +LIS    L  C                     KCG +  A  +
Sbjct: 111 ----------------DLISWNSMLKGCL--------------------KCGDLTMACNM 134

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD+MSE+  V W TII G    G  E A  L+  M                         
Sbjct: 135 FDKMSERNVVSWTTIINGLLEFGRVEVAECLFRVMPTK---------------------- 172

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
                            D+ A +++V  +   GR+EDA  +F+KM  +NVISW ++I G 
Sbjct: 173 -----------------DVTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGL 215

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
            ++GR  EA+ +F +ML +  +    T    L+AC+       G +I   + +       
Sbjct: 216 DHNGRSFEALVVFHKMLAS-FKATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNE 274

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKN--MWAALLTACRVN 514
            +  A +I       L+D A ++        ++N  +W ALLT   +N
Sbjct: 275 YIS-ASLISFYANCKLIDNASSIFND---NVSRNVVVWTALLTGYGLN 318



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 72/146 (49%), Gaps = 10/146 (6%)

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+ F+ + GRI++AR +F+KM    V  +  +I GY + GR E+A++LF +M +  +   
Sbjct: 56  LLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDL--- 112

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            +++ ++L  C + G       +F  MS  + +      +  +I  L   G ++ A  L 
Sbjct: 113 -ISWNSMLKGCLKCGDLTMACNMFDKMSERNVVS-----WTTIINGLLEFGRVEVAECLF 166

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLE 518
           R  P K     W +++     NG +E
Sbjct: 167 RVMPTKDV-TAWNSMVHGFFSNGRVE 191


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/598 (34%), Positives = 342/598 (57%), Gaps = 34/598 (5%)

Query: 140 CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSC 199
           C   ++    K++ + ++ +G      + N +L  + +C ++ DA  LFDEMP+R+ VS 
Sbjct: 12  CTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSW 71

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWE-EFSDCGSRTFATMIRASAGLELISVGKQLHSCAL 258
             I+     +    +   +F  ++  +        +AT+++A A L  + +GKQ+H+  +
Sbjct: 72  ASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFV 131

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
              F D+  V  +L+DMY+KCG    A+ VFD +  KT+V W  +++GYA  G  +EA++
Sbjct: 132 LSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAME 191

Query: 319 LYY-------------------------------EMRDSGVKM-DHFTFSMIIRICTRLA 346
           L+                                EMR  GV + D    S ++  C  LA
Sbjct: 192 LFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLA 251

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
            L   KQ H  ++  G+   +  ++ALVD Y+K   I  AR+VF++ML ++V+SW ++I 
Sbjct: 252 VLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIV 311

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           G   HGR +EA++L++QM+L  ++PN VTF+ ++ ACS +GL  +G ++F++M  D++I 
Sbjct: 312 GAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRIS 371

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P    + C ++LL R G L+EA  LI+  P K  +  WAALL+AC+ +GN E+G   A++
Sbjct: 372 PSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADR 431

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           L  +   + S YV+L N+Y  +GK ++ + V + +    ++  P  S I++ K+  VF +
Sbjct: 432 LLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKESQVFHA 491

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGL 645
           G+  H    EI+  +  +  E+ K GY+P+   +L D++EQE +R L +HSE+ AVA+GL
Sbjct: 492 GETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERWAVAYGL 551

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +     T ++IV++ RIC DCH  +KL + +  +EI+VRDA+R+HHFKDG CSC D+W
Sbjct: 552 LKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCNDFW 609



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 169/357 (47%), Gaps = 57/357 (15%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            Y  L+ AC  L S+R  K+V +  + + F  D  +++ ++ M+ +CG+   AR +FD +
Sbjct: 106 VYATLLKACASLCSLRLGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSI 165

Query: 192 -------------------------------PERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
                                          P RNL S   +I+G++ SG  ++   +F+
Sbjct: 166 LVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFI 225

Query: 221 DLWEEFSD-CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
           ++  E  D       ++++ A A L ++ +GKQ+H   +  G+   +F+S AL+DMY+KC
Sbjct: 226 EMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKC 285

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
             I  A+ VF+ M  +  V W +II G A HG ++EALDLY +M  + +K +  TF  +I
Sbjct: 286 SDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLI 345

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGL------------DIVANSALVDFYSKWGRIEDAR 387
             C+           HAGLV  G  L             +   +  +D  S+ G + +A 
Sbjct: 346 YACS-----------HAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAE 394

Query: 388 HVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQML-LNGMRPNHVTFLAVLSA 442
            +   M  K +  +W AL++   +HG  E  V + +++L LN   P+    L+ + A
Sbjct: 395 DLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLSNVYA 451



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 93/201 (46%), Gaps = 2/201 (0%)

Query: 116 LFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMH 175
           +F  +  EG   V      +++ AC  L  +   K++   ++ +G+E  L++ N ++ M+
Sbjct: 223 MFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMY 282

Query: 176 VRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFA 235
            +C  ++ AR +F+ M  R++VS   II G    G   EA  L+  +          TF 
Sbjct: 283 AKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFV 342

Query: 236 TMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE 294
            +I A +   L+S G++L    ++      ++ +    +D+ S+ G + +A+ +   M  
Sbjct: 343 GLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPH 402

Query: 295 KTT-VGWNTIIAGYALHGYSE 314
           K     W  +++    HG +E
Sbjct: 403 KPDEPTWAALLSACKHHGNTE 423



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 50/237 (21%), Positives = 107/237 (45%), Gaps = 16/237 (6%)

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +++CT+  +  +AK+ HA +V+ G        + L+D Y K   ++DA ++FD+M  ++ 
Sbjct: 9   LKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDH 68

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACS-----RSGLSERG 452
           +SW +++  Y       + + +F  M     ++P+H  +  +L AC+     R G     
Sbjct: 69  VSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHA 128

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACR 512
             +      D  +K      + ++++  + GL   A ++      KT+ + W A+L+   
Sbjct: 129 RFVLSPFVDDDVVK------SSLVDMYAKCGLPSIARSVFDSILVKTSVS-WTAMLSGYA 181

Query: 513 VNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRML 569
            +G   L   A E         L ++  L++    SG   +   +   +RR+G+ ++
Sbjct: 182 RSG---LKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIV 235


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 202/561 (36%), Positives = 325/561 (57%), Gaps = 37/561 (6%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I+ L   KR REA+++ + ++        ++TY  L+  C+ LR++ E  +V ++  ++G
Sbjct: 65  IDILCEQKRLREAIQILDHVD-----RPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSG 119

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F P + + NR+L M+++C  +++A+RLFDEM ER+L S N++I+G   +G   EA  LF 
Sbjct: 120 FVPGVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFD 179

Query: 221 DLWE--------------------------------EFSDCGSRTFATMIRASAGLELIS 248
            + E                                E   C   T ++ + ASA ++ + 
Sbjct: 180 QMTERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLH 239

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           +GK++H   L++G   +  V  AL DMY KCGSI +A+ +FD+  ++  V W  +I  Y 
Sbjct: 240 LGKEIHGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYF 299

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
             G  EE   L+ ++  SG+  + FTFS ++  C   A+ E  KQ H  + R GF     
Sbjct: 300 KEGRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSF 359

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
           A S LV  Y+K G I++AR VF+ M   +++SW +LI+GY  +G+ +EA++ FE +L +G
Sbjct: 360 AASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSG 419

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
            +P+H+TF+ VLSAC+ +GL ++G E F S+   H +   A HYAC+I+LL R G L EA
Sbjct: 420 TQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEA 479

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
             +I   P +  K +WA+LL  CR++GNL+L K AAE L+ +EPE  + Y  L NIY ++
Sbjct: 480 EDIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPENPATYTTLANIYATA 539

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           G     AEV + +  +G+   P  SWIE+K++ HVFL GD SH ++KEI+  + ++   +
Sbjct: 540 GLWGGVAEVRKVMDARGVVKKPGLSWIEIKREVHVFLVGDTSHAKSKEIHEFLGKLSKRM 599

Query: 609 SKHGYVPEEKTLLPDVDEQEQ 629
            + GYVP+   +L DV+E+++
Sbjct: 600 KEEGYVPDTNFVLHDVEEEQK 620


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  376 bits (966), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/586 (32%), Positives = 327/586 (55%), Gaps = 32/586 (5%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           +++  ++L  G + ++++   ++ M++ CG +  AR +FD  P+ ++++ NMII+     
Sbjct: 159 RQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKV 218

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
           G + E+  LFL + ++     + T   ++ A + L+ +  GK++HS         N+ + 
Sbjct: 219 GKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLE 278

Query: 270 CALIDMYSKCGSIEDAQGVF-------------------------------DEMSEKTTV 298
            A+IDMY+ CG ++ A G+F                               D+M EK  V
Sbjct: 279 NAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYV 338

Query: 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
            W  +I GY      +EAL+L+  M+ + VK D FT   ++  C  L +LE  +     +
Sbjct: 339 SWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYI 398

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
            R+    D+   +AL+D Y K G ++ A  +F +M  ++  +W A+I G   +G GE+A+
Sbjct: 399 DRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKAL 458

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478
           ++F  ML   + P+ +T++ VLSAC+ +GL ++G + F  M+  H I+P   HY C+++L
Sbjct: 459 DMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDL 518

Query: 479 LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538
           L R G L EA+ +I   P K    +W ALL  CRV    ++ +   +++  +EP+  + Y
Sbjct: 519 LARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVY 578

Query: 539 VVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIY 598
           V+L NIY +  +  +  E+ + +  KG++  P CS IE+  + H F++GD+SH QTK I 
Sbjct: 579 VLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTKNID 638

Query: 599 RKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIV 657
            K+D+M  ++   GY P+   +  D+ E+++    + HSEKLA+AFGLIN+     ++I 
Sbjct: 639 AKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIT 698

Query: 658 QSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++ R+C DCHN  KL++ V  RE++VRD +RFHHFK G+CSC DYW
Sbjct: 699 KNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 163/320 (50%), Gaps = 9/320 (2%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDM--YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           +Q+H  A+K G   N  +   ++      + G  + A+ +FDE+ E     WNT+I GY+
Sbjct: 56  QQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYS 115

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
              + +  + LY EM   GVK D +TF  + +  TR  +LE+ +Q H  +++HG   ++ 
Sbjct: 116 RLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVF 175

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
            ++ALV  Y   G+++ AR VFD     +VI+WN +I+ Y   G+ EE+  LF  M    
Sbjct: 176 VHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQ 235

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           + P  VT + VLSACS+      G ++  S  ++ K++   +    MI++    G +D A
Sbjct: 236 VLPTTVTLVLVLSACSKLKDLRTGKKV-HSYVKNCKVESNLVLENAMIDMYADCGEMDSA 294

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIYNS 547
             + R    +   + W  +++     G +++ +   +K+    PEK   ++  +++ Y  
Sbjct: 295 LGIFRSMNNRDIIS-WTTIVSGFTNLGEIDVARNYFDKM----PEKDYVSWTAMIDGYIR 349

Query: 548 SGKLKEAAEVIRTLRRKGLR 567
           S + KEA E+ R ++   ++
Sbjct: 350 SNRFKEALELFRNMQATNVK 369



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 112/232 (48%), Gaps = 3/232 (1%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   +K      + I+  + + R++EALELF  ++          T  ++++AC  L ++
Sbjct: 330 DKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQ-ATNVKPDEFTMVSVLTACAHLGAL 388

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
              + + +Y+     + DL++RN ++ M+ +CG +  A  +F EM +R+  +   +I G+
Sbjct: 389 ELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGL 448

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH-SCALKMGFGDN 265
             +G   +A  +F ++ +        T+  ++ A     L+  G++       + G   N
Sbjct: 449 AVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPN 508

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYALHGYSEEA 316
           +     L+D+ ++ G +++A  V + M  K  ++ W  ++AG  ++  S+ A
Sbjct: 509 IAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMA 560


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 191/586 (32%), Positives = 327/586 (55%), Gaps = 32/586 (5%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           +++  ++L  G + ++++   ++ M++ CG +  AR +FD  P+ ++++ NMII+     
Sbjct: 138 RQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKV 197

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
           G + E+  LFL + ++     + T   ++ A + L+ +  GK++HS         N+ + 
Sbjct: 198 GKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLE 257

Query: 270 CALIDMYSKCGSIEDAQGVF-------------------------------DEMSEKTTV 298
            A+IDMY+ CG ++ A G+F                               D+M EK  V
Sbjct: 258 NAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYV 317

Query: 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
            W  +I GY      +EAL+L+  M+ + VK D FT   ++  C  L +LE  +     +
Sbjct: 318 SWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYI 377

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
            R+    D+   +AL+D Y K G ++ A  +F +M  ++  +W A+I G   +G GE+A+
Sbjct: 378 DRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGEKAL 437

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478
           ++F  ML   + P+ +T++ VLSAC+ +GL ++G + F  M+  H I+P   HY C+++L
Sbjct: 438 DMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDL 497

Query: 479 LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538
           L R G L EA+ +I   P K    +W ALL  CRV    ++ +   +++  +EP+  + Y
Sbjct: 498 LARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNGAVY 557

Query: 539 VVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIY 598
           V+L NIY +  +  +  E+ + +  KG++  P CS IE+  + H F++GD+SH QTK I 
Sbjct: 558 VLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTKNID 617

Query: 599 RKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIV 657
            K+D+M  ++   GY P+   +  D+ E+++    + HSEKLA+AFGLIN+     ++I 
Sbjct: 618 AKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTIRIT 677

Query: 658 QSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++ R+C DCHN  KL++ V  RE++VRD +RFHHFK G+CSC DYW
Sbjct: 678 KNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 163/320 (50%), Gaps = 9/320 (2%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDM--YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           +Q+H  A+K G   N  +   ++      + G  + A+ +FDE+ E     WNT+I GY+
Sbjct: 35  QQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYS 94

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
              + +  + LY EM   GVK D +TF  + +  TR  +LE+ +Q H  +++HG   ++ 
Sbjct: 95  RLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVF 154

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
            ++ALV  Y   G+++ AR VFD     +VI+WN +I+ Y   G+ EE+  LF  M    
Sbjct: 155 VHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQ 214

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           + P  VT + VLSACS+      G ++  S  ++ K++   +    MI++    G +D A
Sbjct: 215 VLPTTVTLVLVLSACSKLKDLRTGKKV-HSYVKNCKVESNLVLENAMIDMYADCGEMDSA 273

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIYNS 547
             + R    +   + W  +++     G +++ +   +K+    PEK   ++  +++ Y  
Sbjct: 274 LGIFRSMNNRDIIS-WTTIVSGFTNLGEIDVARNYFDKM----PEKDYVSWTAMIDGYIR 328

Query: 548 SGKLKEAAEVIRTLRRKGLR 567
           S + KEA E+ R ++   ++
Sbjct: 329 SNRFKEALELFRNMQATNVK 348



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 112/232 (48%), Gaps = 3/232 (1%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   +K      + I+  + + R++EALELF  ++          T  ++++AC  L ++
Sbjct: 309 DKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQ-ATNVKPDEFTMVSVLTACAHLGAL 367

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
              + + +Y+     + DL++RN ++ M+ +CG +  A  +F EM +R+  +   +I G+
Sbjct: 368 ELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGL 427

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH-SCALKMGFGDN 265
             +G   +A  +F ++ +        T+  ++ A     L+  G++       + G   N
Sbjct: 428 AVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPN 487

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYALHGYSEEA 316
           +     L+D+ ++ G +++A  V + M  K  ++ W  ++AG  ++  S+ A
Sbjct: 488 IAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMA 539


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/623 (35%), Positives = 336/623 (53%), Gaps = 32/623 (5%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           RE L L   +           T  A + AC  +  +     +    +  GFE    + N 
Sbjct: 87  RECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWIHGACVRAGFEGHHVVANS 146

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW-----EE 225
           ++L++ + G + DARR+FD    RNLV+ N +I+G   +G   ++ L+F ++      EE
Sbjct: 147 LVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEE 206

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF--GDNVFVSCALIDMYSKCGSI- 282
                  TFA++++A   L     G Q+H+  +  G     N  ++ AL+DMY KC  + 
Sbjct: 207 DHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLL 266

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
             A  VF+ + +K  + W T+I G+A  G  +EA++L+     SGV+ D    S ++ + 
Sbjct: 267 PMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSSVVGVF 326

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
              A +E  +Q H   V+   GLD+   ++L+D Y K G  ++A   F ++  +NV+SW 
Sbjct: 327 ADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPARNVVSWT 386

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           A+I G G HG G+EA+ +FE+M   G+ P+ V +LA+LSACS SGL E     F ++  D
Sbjct: 387 AMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECRRYFSAIRHD 446

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
            +++PRA HYACM++LLGR G L EA  L+   P   T  +W  LL+ACRV+ N+ +G+ 
Sbjct: 447 RRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLLSACRVHKNVTVGRE 506

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPH 582
           A E L  ++ +   NYV+L NI+  +G  +E   V   +RR+GLR    CSW+EV K+ H
Sbjct: 507 AGETLLAIDGDNPVNYVMLSNIFAEAGDWRECQRVRGAMRRRGLRKQGGCSWVEVGKEAH 566

Query: 583 VFL-SGDQSHVQTKEI---YRKVDRMMLEISKHGYVP-----EEKTLLPDVDEQEQ-RVL 632
            F   GD SH +  +I    R V+R M E  + GY P       +  L DVDE+ +   L
Sbjct: 567 FFYGGGDDSHPRAADICCVLRDVERTMRE--RLGYSPGSSSSSSEAALHDVDEESRAESL 624

Query: 633 SYHSEKLAVAF------------GLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGRE 680
             HSE+LAV              G+  T     +++ ++ R+C DCH   K ++ V GR 
Sbjct: 625 RAHSERLAVGLWLLLHHDHDHGEGMGGTKRKEVIRVYKNLRVCGDCHEFFKGLSSVVGRV 684

Query: 681 IVVRDASRFHHFKDGMCSCGDYW 703
           +VVRDA+RFH F+DG+CSC DYW
Sbjct: 685 LVVRDANRFHRFEDGVCSCKDYW 707



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/235 (37%), Positives = 128/235 (54%), Gaps = 8/235 (3%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           +  A M+RASA    I  G QLH   LK+GFG +  +   LIDMY+KCG +  A  VF  
Sbjct: 5   KMIADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGG 64

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSMIIRICTRLASLEH 350
           M E+  V W  ++ G+  HG + E L L   MR  S V  + FT S  ++ C  +  +  
Sbjct: 65  MPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAA 124

Query: 351 AKQAHAGLVRHGF-GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
               H   VR GF G  +VANS LV  YSK GRI DAR VFD  + +N+++WNA+I+GY 
Sbjct: 125 GVWIHGACVRAGFEGHHVVANS-LVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYA 183

Query: 410 NHGRGEEAVELFEQMLL-----NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           + G G +++ +F +M          +P+  TF ++L AC   G +  G ++  +M
Sbjct: 184 HAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAM 238



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 116/442 (26%), Positives = 214/442 (48%), Gaps = 22/442 (4%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           ++ A     +I    ++   +L  GF  D  + N ++ M+ +CG +  A  +F  MPERN
Sbjct: 10  MLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMPERN 69

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR--TFATMIRASAGLELISVGKQL 253
           +VS   ++ G +  GD  E  L  L      SD      T +  ++A   +  ++ G  +
Sbjct: 70  VVSWTALMVGFLRHGDAREC-LRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWI 128

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           H   ++ GF  +  V+ +L+ +YSK G I DA+ VFD    +  V WN +I+GYA  G+ 
Sbjct: 129 HGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHG 188

Query: 314 EEALDLYYEMR-----DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL--D 366
            ++L ++ EM+     +   + D FTF+ +++ C  L +     Q HA +V  G     +
Sbjct: 189 RDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASN 248

Query: 367 IVANSALVDFYSKWG-RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
            +   AL+D Y K    +  A  VF+++  KN I W  +I G+   G+ +EA+ELF +  
Sbjct: 249 AILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFW 308

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC---MIELLGRE 482
            +G+R +     +V+   +   L E+G ++     +     P  +  +    +I++  + 
Sbjct: 309 SSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVK----TPAGLDVSVANSLIDMYHKC 364

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVV 540
           GL DEA    R  P +   + W A++     +G+ +  +  F   +  G+EP++++ Y+ 
Sbjct: 365 GLTDEAARRFREVPARNVVS-WTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVA-YLA 422

Query: 541 LLNIYNSSGKLKEAAEVIRTLR 562
           LL+  + SG ++E       +R
Sbjct: 423 LLSACSHSGLVEECRRYFSAIR 444


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 184/509 (36%), Positives = 314/509 (61%), Gaps = 4/509 (0%)

Query: 184 ARRLFDEMPER-NLVSCNMIIAGMIDSGDYLEAFLLFLDLW-EEFSDCGSRTFATMIRAS 241
           A ++F ++ +  N+   N +I G  + G+ + AF L+ ++      +  + T+  +I+A 
Sbjct: 72  AHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAV 131

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
             +  + +G+ +HS  ++ GFG  ++V  +L+ +Y+ CG +  A  VFD+M EK  V WN
Sbjct: 132 TTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN 191

Query: 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           ++I G+A +G  EEAL LY EM   G+K D FT   ++  C ++ +L   K+ H  +++ 
Sbjct: 192 SVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKV 251

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           G   ++ +++ L+D Y++ GR+E+A+ +FD+M+ KN +SW +LI G   +G G+EA+ELF
Sbjct: 252 GLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELF 311

Query: 422 EQM-LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
           + M    G+ P  +TF+ +L ACS  G+ + G+E F+ M  ++KI+PR  H+ CM++LL 
Sbjct: 312 KYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLA 371

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540
           R G + +A+  I+  P +    +W  LL AC V+G+ +L +FA  ++  +EP    +YV+
Sbjct: 372 RAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVL 431

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRK 600
           L N+Y S  +  +  ++ + + R G++ +P  S +EV  + H FL GD+SH Q+  IY K
Sbjct: 432 LSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAK 491

Query: 601 VDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQS 659
           +  M   +   GYVP+   +  DV+E+E +  + YHSEK+A+AF LI+T + +P+ +V++
Sbjct: 492 LKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKN 551

Query: 660 HRICCDCHNAIKLIAMVTGREIVVRDASR 688
            R+C DCH AIKL++ V  REIVVRD SR
Sbjct: 552 LRVCADCHLAIKLVSKVYNREIVVRDRSR 580



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 183/363 (50%), Gaps = 30/363 (8%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           A  L+  +   G  +  + TY  LI A   +  +R  + + S ++ +GF   +Y++N +L
Sbjct: 104 AFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLL 163

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            ++  CG +  A ++FD+MPE++LV+ N +I G  ++G   EA  L+ ++  +       
Sbjct: 164 HLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGF 223

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T  +++ A A +  +++GK++H   +K+G   N+  S  L+D+Y++CG +E+A+ +FDEM
Sbjct: 224 TIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEM 283

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS-GVKMDHFTFSMIIRICTRLASLEHA 351
            +K +V W ++I G A++G+ +EA++L+  M  + G+     TF  I+  C+        
Sbjct: 284 VDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACS-------- 335

Query: 352 KQAHAGLVRHGFGL------------DIVANSALVDFYSKWGRIEDARHVFDKM-LCKNV 398
              H G+V+ GF               I     +VD  ++ G+++ A      M +  NV
Sbjct: 336 ---HCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNV 392

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           + W  L+     HG  + A   F ++ +  + PNH     +LS       SE+ W   Q 
Sbjct: 393 VIWRTLLGACTVHGDSDLAE--FARIQILQLEPNHSGDYVLLSNMY---ASEQRWSDVQK 447

Query: 459 MSR 461
           + +
Sbjct: 448 IRK 450


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/563 (35%), Positives = 327/563 (58%), Gaps = 4/563 (0%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           RS+R+  ++   ++  GFE    + + ++  + +  +   + +LFD  P ++  + + +I
Sbjct: 21  RSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVI 80

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
           +    +   L A   F  +          T  T  ++ A L  + +   LH+ +LK    
Sbjct: 81  SSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAHH 140

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323
            +VFV  +L+D Y+KCG +  A+ VFDEM  K  V W+ +I GY+  G  EEAL+L+   
Sbjct: 141 HDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRA 200

Query: 324 --RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
             +D  ++++ FT S ++R+C+     E  KQ H    +  F       S+L+  YSK G
Sbjct: 201 LEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCG 260

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            +E    VF+++  +N+  WNA++     H       ELFE+M   G++PN +TFL +L 
Sbjct: 261 VVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLY 320

Query: 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
           ACS +GL E+G   F  M ++H I+P + HYA +++LLGR G L+EA  +I+  P + T+
Sbjct: 321 ACSHAGLVEKGEHCFGLM-KEHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPTE 379

Query: 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           ++W ALLT CR++GN EL  F A+K++ M        V+L N Y ++G+ +EAA   + +
Sbjct: 380 SVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRWEEAARARKMM 439

Query: 562 RRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLL 621
           R +G++     SW+E   + H F +GD+SH +T+EIY K++ +  E++K GYV +   +L
Sbjct: 440 RDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMAKAGYVADTSFVL 499

Query: 622 PDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGRE 680
            +VD  E+ + + YHSE+LA+AFGLI      P++++++ R+C DCH AIK I+  TGR 
Sbjct: 500 KEVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDCHTAIKFISKCTGRV 559

Query: 681 IVVRDASRFHHFKDGMCSCGDYW 703
           I+VRD +RFH F+DG C+CGDYW
Sbjct: 560 IIVRDNNRFHRFEDGKCTCGDYW 582



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 93/221 (42%), Gaps = 13/221 (5%)

Query: 112 EALELFE-ILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           EAL LF+  LE +    V   T  +++  C         K+V      T F+   ++ + 
Sbjct: 192 EALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASS 251

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ ++ +CG++    ++F+E+  RNL   N ++            F LF    EE    G
Sbjct: 252 LISLYSKCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELF----EEMERVG 307

Query: 231 SR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            +    TF  ++ A +   L+  G+       + G          L+D+  + G +E+A 
Sbjct: 308 VKPNFITFLCLLYACSHAGLVEKGEHCFGLMKEHGIEPGSQHYATLVDLLGRAGKLEEAV 367

Query: 287 GVFDEMS-EKTTVGWNTIIAGYALHGYSEEA---LDLYYEM 323
            V  EM  + T   W  ++ G  +HG +E A    D  +EM
Sbjct: 368 LVIKEMPMQPTESVWGALLTGCRIHGNTELASFVADKVFEM 408



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 45/94 (47%)

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
           T   SL    Q H  +++ GF    +    L++FYSK      +  +FD    K+  +W+
Sbjct: 18  THTRSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWS 77

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           ++I+ +  +     A+  F +ML +G+ P+  T 
Sbjct: 78  SVISSFAQNDLPLPALRFFRRMLRHGLLPDDHTL 111


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 214/628 (34%), Positives = 347/628 (55%), Gaps = 12/628 (1%)

Query: 80   LKESSLPDTQMKKPSAGICS---QIEKLVLNKRYREAL-ELFEILEFEGGFDVGSSTYDA 135
            + E+ L   +M  PS  + +    +     N R +EA   L E+L+  GG    + ++ +
Sbjct: 489  ISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQ--GGVLPDALSFTS 546

Query: 136  LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
            ++S+C      +E + +   +L +G+     +   ++ MH RC  +  AR +F+EM   +
Sbjct: 547  VLSSCY---CSQEAQVLRMCILESGYRSAC-LETALISMHGRCRELEQARSVFNEMDHGD 602

Query: 196  LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
            +VS   +++   ++ D+ E   LF  +  E       T AT +        + +GK +H+
Sbjct: 603  VVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHA 662

Query: 256  CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
            C  ++G   ++ V  AL++MYS CG   +A   F+ M  +  V WN + A YA  G ++E
Sbjct: 663  CVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKE 722

Query: 316  ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
            A+ L+ +M+  GVK D  TFS  + +    A +   K  HA     G   D+   + LV 
Sbjct: 723  AVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVATGLVK 782

Query: 376  FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
             Y+K G++++A  +F       V+  NA+I     HG  EEAV++F +M   G+RP+  T
Sbjct: 783  LYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVAT 842

Query: 436  FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
             ++++SAC  +G+ E G   F +M     I P   HYAC ++LLGR G L+ A  +IR  
Sbjct: 843  LVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKM 902

Query: 496  PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
            PF+    +W +LL  C++ G+ ELG+  A+++  ++P   + +VVL NIY ++GK K+A 
Sbjct: 903  PFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDAD 962

Query: 556  EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
               + +  + ++  P  SW E+ KQ H F++GD+SH +T EIY  +D++ L + + GY  
Sbjct: 963  VDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVLDKLELLMRRAGY-- 1020

Query: 616  EEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAM 675
            E    L   DE +++ L YHSE++A+AFGLI T   T L+IV++ R+C DCH A K I+M
Sbjct: 1021 EADKGLDVEDELKEKALGYHSERIAIAFGLIATPPETTLKIVKNLRVCGDCHTATKYISM 1080

Query: 676  VTGREIVVRDASRFHHFKDGMCSCGDYW 703
            V GREI+VRD+ RFHHF +G CSC D W
Sbjct: 1081 VMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 135/451 (29%), Positives = 224/451 (49%), Gaps = 30/451 (6%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           Y AL+ +C+    + + K     + + G E  L++ N ++ M+VRCG + +A  +F +M 
Sbjct: 28  YTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKME 87

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC-GSRTFATMIRASAGLELISVGK 251
           ERN+VS   +I+     G +  AF LF  +  E S    S T   M+ A A    +++G+
Sbjct: 88  ERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGR 147

Query: 252 QLHSCALKMGF----GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
            +H+   ++G          V  A+I+MY+KCGS+EDA  VF  + EK  V W  +   Y
Sbjct: 148 SIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAY 207

Query: 308 ALH-GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           A    +  +AL ++ EM    +  +  TF   +  CT   SL      H+ L     G D
Sbjct: 208 AQERRFYPDALRIFREMLLQPLAPNVITFITALGACT---SLRDGTWLHSLLHEASLGFD 264

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCK---NVISWNALIAGYGNHGRGEEAVELFEQ 423
            +A++AL++ Y K G  E A  VF  M  +   +++SWNA+I+     GR  +A+ +F +
Sbjct: 265 PLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRR 324

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGL---SERGWE--IFQS-MSRDHKIKPRAMHYACMIE 477
           + L GMRPN VT + +L+A + SG+   + RG+   I++S   RD  I         +I 
Sbjct: 325 LRLEGMRPNSVTLITILNALAASGVDFGAARGFHGRIWESGYLRDVVIGN------AIIS 378

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC--RVNGNLELGKFAAEKLYGMEPEKL 535
           +  + G    A+A+ R   +K     W  +L A   R +    +  F    L G++P K+
Sbjct: 379 MYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKV 438

Query: 536 SNYVVLLNIYNSSGKL---KEAAEVIRTLRR 563
           S ++ +LN  ++S  L   ++   +I T RR
Sbjct: 439 S-FIAILNACSNSEALDFGRKIHSLILTRRR 468



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 157/656 (23%), Positives = 275/656 (41%), Gaps = 62/656 (9%)

Query: 16  IQNSCSFSCSFTANKVL---KGKSLLSGCYFSLDKRKWKRSFQRVECCLMEQGLKPRPKP 72
           I+  CS S +   ++     +  +LL  C  S D  K K + + +    +EQ L      
Sbjct: 7   IRQLCSLSGAVRVDRAADLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCL 66

Query: 73  NKIYTE--ELKESSLPDTQMKKPSAGICSQIEKLVLNKR---YREALELFEILEFEGGFD 127
             +Y     L+E+    ++M++ +  + S    +  N +   +  A  LF  +  E    
Sbjct: 67  INMYVRCGSLEEAHAIFSKMEERN--VVSWTALISANAQCGAFARAFALFRTMLLESSAA 124

Query: 128 VGSSTYDALISACIGLRSIREVKRVFSYMLSTGFE----PDLYMRNRVLLMHVRCGMMID 183
             S T  A+++AC   R +   + + + +   G E        + N ++ M+ +CG + D
Sbjct: 125 PNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLED 184

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGD-YLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
           A  +F  +PE+++VS   +          Y +A  +F ++  +       TF T + A  
Sbjct: 185 AIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACT 244

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS---EKTTVG 299
            L     G  LHS   +   G +   S ALI+MY KCG  E A  VF  M+   E   V 
Sbjct: 245 SLR---DGTWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVS 301

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR-ICTRLASLEHAKQAHAGL 358
           WN +I+     G   +A+ ++  +R  G++ +  T   I+  +         A+  H  +
Sbjct: 302 WNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARGFHGRI 361

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEA 417
              G+  D+V  +A++  Y+K G    A  VF ++  K +VISWN ++    +     + 
Sbjct: 362 WESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKV 421

Query: 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
           V  F  MLL G+ PN V+F+A+L+ACS S   + G +I   +    +    +     ++ 
Sbjct: 422 VNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVS 481

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNM-WAALLTACRVNGNLE--LGKFAAEKLYGMEPEK 534
           + G+ G + EA  + +  P  +   + W  +L A   N   +   G        G+ P+ 
Sbjct: 482 MYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDA 541

Query: 535 LSNYVVLLNIYNSSGKLKEAAEVIRT-----------LRRKGLRMLPACSWIEVKKQPHV 583
           LS   VL + Y S     + A+V+R            L    + M   C   E+++   V
Sbjct: 542 LSFTSVLSSCYCS-----QEAQVLRMCILESGYRSACLETALISMHGRCR--ELEQARSV 594

Query: 584 FLSGDQSHVQT--------------KEIYRKVDRMMLEISKHGYVPEEKTLLPDVD 625
           F   D   V +              KE++    RM LE    G +P++ TL   +D
Sbjct: 595 FNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLE----GVIPDKFTLATTLD 646



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 133/566 (23%), Positives = 231/566 (40%), Gaps = 68/566 (12%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVF-SYML 157
           + I   V   R+ +A+ +F  L  EG     S T   +++A           R F   + 
Sbjct: 304 AMISASVEAGRHGDAMAIFRRLRLEG-MRPNSVTLITILNALAASGVDFGAARGFHGRIW 362

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER-NLVSCNMIIAGMIDSGDYLEAF 216
            +G+  D+ + N ++ M+ +CG    A  +F  +  + +++S N ++    D   + +  
Sbjct: 363 ESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVV 422

Query: 217 LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCA--LID 274
             F  +     D    +F  ++ A +  E +  G+++HS  L     D V  S A  L+ 
Sbjct: 423 NTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRR-RDYVESSVATMLVS 481

Query: 275 MYSKCGSIEDAQGVFDEM--SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332
           MY KCGSI +A+ VF EM    ++ V WN ++  YA +  S+EA     EM   GV  D 
Sbjct: 482 MYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDA 541

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
            +F+ ++  C      + A+     ++  G+       +AL+  + +   +E AR VF++
Sbjct: 542 LSFTSVLSSCY---CSQEAQVLRMCILESGY-RSACLETALISMHGRCRELEQARSVFNE 597

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG----- 447
           M   +V+SW A+++    +   +E   LF +M L G+ P+  T    L  C  S      
Sbjct: 598 MDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLG 657

Query: 448 ------LSERGWEI------------------FQSMSRDHKIKPRAM-HYACMIELLGRE 482
                 ++E G E                    +++S    +K R +  +  M     + 
Sbjct: 658 KVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQA 717

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL---GK----FAAEKLYGMEPEKL 535
           GL  EA  L R    +  K       T   V+G   L   GK     AAE   G++ + +
Sbjct: 718 GLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAES--GLDSD-V 774

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTK 595
           S    L+ +Y   GKL EA  + R           AC W        V L+     +   
Sbjct: 775 SVATGLVKLYAKCGKLDEAMSLFR----------GACDWTV------VLLNAIIGALAQH 818

Query: 596 EIYRKVDRMMLEISKHGYVPEEKTLL 621
               +  +M  ++ + G  P+  TL+
Sbjct: 819 GFSEEAVKMFWKMQQEGVRPDVATLV 844


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/475 (38%), Positives = 295/475 (62%), Gaps = 4/475 (0%)

Query: 233 TFATMIRASAGLE-LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS--IEDAQGVF 289
           TF  +++A A L     VG Q H+ ALK GF  + +VS  LI MYS  G   + DA+ VF
Sbjct: 128 TFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVF 187

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           D M +++ V W+ +I GY   G S +A++L+ EM+ +GV+ D  T   ++   T L +LE
Sbjct: 188 DRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALE 247

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
            A+     + R G G  +   +AL+D  +K G ++ A  VF+ M  ++V+SW ++I    
Sbjct: 248 LARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALA 307

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
             GRG+EAV +FE+M + G+ P+ V F+ VL+ACS +G+ + G   F +M  ++ I+P+ 
Sbjct: 308 MEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKI 367

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HY CM+++ GR G+++ A   +R  P +    +W +L++ACR +G LELG+     L  
Sbjct: 368 EHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLH 427

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
             P   +NY++L N++  + + KE +E+ R + ++G++ +P CS +E+  + H F++GD+
Sbjct: 428 EYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDE 487

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINT 648
           SH Q K+IYR V+ M  E+ + G++     +L D+DE+++   L +HSEKLA+AF L+ T
Sbjct: 488 SHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRT 547

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              T +++V++ R+C DCH AIK I+ V  REIVVRD SRFH FKDG CSC D+W
Sbjct: 548 PPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 145/316 (45%), Gaps = 29/316 (9%)

Query: 117 FEILEFEGGFDVGSSTYDALISACIGLRSIREVK-RVFSYMLSTGFEPDLYMRNRVLLMH 175
           F  L   G       T+  L+ AC  L    +V  +  +  L  GF  D Y+ N ++ M+
Sbjct: 113 FFPLMLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMY 172

Query: 176 VRC---GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
             C   G + DAR +FD MP+ + V+ + +I G +  G   +A  LF ++          
Sbjct: 173 -SCFGGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEV 231

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T   ++ A+  L  + + + +     + G G +V +  ALID  +KCG ++ A  VF+ M
Sbjct: 232 TVIGVLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGM 291

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            +++ V W ++I   A+ G  +EA+ ++ EM+ +GV  D   F  ++  C+         
Sbjct: 292 QQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACS--------- 342

Query: 353 QAHAGLVRHG----------FGLD--IVANSALVDFYSKWGRIEDARHVFDKM-LCKNVI 399
             HAG+V  G          +G++  I     +VD + + G +E A      M +  N +
Sbjct: 343 --HAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPV 400

Query: 400 SWNALIAGYGNHGRGE 415
            W +L++    HGR E
Sbjct: 401 IWRSLVSACRAHGRLE 416


>gi|359496160|ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33760-like [Vitis vinifera]
          Length = 561

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 205/576 (35%), Positives = 338/576 (58%), Gaps = 35/576 (6%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S  Y  L+ A  G R ++ +++V ++++ +G      +  ++L +    G ++  R+LF 
Sbjct: 19  SPAYQVLLHA--GPR-LKPLQQVHAHLIVSGSYRSRALLTKLLTLACTAGSILYTRQLFF 75

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
            +   +    N II      G   +A L +  +  +     + TF  +I+A A +  + +
Sbjct: 76  SITNPDSFLFNAIIKASSKFGFSCDAILFYRRMVADSIPQSNYTFTAVIKACADISALRI 135

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G+ +HS  L  G+  + FV  ALI  Y+K G + +A+ VFD M E+T + WN++I+GY  
Sbjct: 136 GRPIHSHVLVCGYDSDSFVQAALIAFYAKSGDVGEAKKVFDRMPERTIIAWNSMISGYDQ 195

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           +G+S+EA+ L+Y MR+ GV+ D  TF  ++  C++  +L+     H  +V + F +++V 
Sbjct: 196 NGFSKEAVGLFYRMRELGVEFDSATFVSVLSACSQSGALDLGCWVHDYIVNNSFDVNVVL 255

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            ++L++ Y++ G +  AR VFD+M  +NV++W A+I+GYG HG G EA+ELF  M ++GM
Sbjct: 256 GTSLINMYTRCGNVSKAREVFDEMNERNVVAWTAMISGYGMHGYGREAIELFRLMRIHGM 315

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
           R                              +D+ + PR  H+ CM+++LGR G L+EAF
Sbjct: 316 R------------------------------QDYGLVPRVEHHVCMVDMLGRAGFLNEAF 345

Query: 490 ALIRG-APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
             I+     +    +W A+L AC+++ NL+LG   AE L   EPE  S+YV+L N+Y  +
Sbjct: 346 QYIKDLKQGEQAPALWTAMLGACKMHKNLDLGVQVAEHLLAAEPENPSHYVLLSNVYALA 405

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
           G+++    V   + RKGL+     S IEV ++ ++F  GD+SH +T EIY+ +D +ML  
Sbjct: 406 GRMERVEMVRNMMIRKGLKKQVGYSIIEVGQKSYLFSMGDRSHPETTEIYKYLDELMLRS 465

Query: 609 SKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
            + GYVP  + ++ +++E+E+   L YHSEKLA+AFGL+ TS    ++IV++ R+C DCH
Sbjct: 466 KEAGYVPAPELVMHELEEEEREYALRYHSEKLAIAFGLMKTSHGMTIRIVKNLRMCEDCH 525

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +AIK I+ +  REI+VRD  RFHHFK+G+CSC DYW
Sbjct: 526 SAIKFISNIANREIIVRDKLRFHHFKNGLCSCQDYW 561


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/589 (34%), Positives = 328/589 (55%), Gaps = 35/589 (5%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           K++ + ++  G      + N +L  + +CG++ DA +LFD +P R+ V+   ++     S
Sbjct: 23  KKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLS 82

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV--GKQLHSCALKMGFGDNVF 267
                A  +   L           FA++++A A L ++ V  GKQ+H+      F D+  
Sbjct: 83  NRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDV 142

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL---------- 317
           V  +LIDMY+K G  +  + VFD +S   ++ W T+I+GYA  G   EA           
Sbjct: 143 VKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRN 202

Query: 318 ---------------------DLYYEMRDSGVKM-DHFTFSMIIRICTRLASLEHAKQAH 355
                                 L+ EMR  G+ + D    S ++  C  LA  E  KQ H
Sbjct: 203 LFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMH 262

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
             ++  G+   +  ++AL+D Y+K   +  A+++F +M  K+V+SW ++I G   HG+ E
Sbjct: 263 GVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAE 322

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
           EA+ L+++M+L G++PN VTF+ ++ ACS +GL  +G  +F++M  DH I P   HY C+
Sbjct: 323 EALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCL 382

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535
           ++L  R G LDEA  LIR  P    +  WAALL++C+ +GN ++    A+ L  ++PE  
Sbjct: 383 LDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDP 442

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTK 595
           S+Y++L NIY  +G  ++ ++V + +     +  P  S I++ K  HVF +G+ SH    
Sbjct: 443 SSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRD 502

Query: 596 EIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPL 654
           EI   +  +  E+ K GY P+  ++L D+D+QE +R L +HSE+LAVA+GL+     T +
Sbjct: 503 EIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTVI 562

Query: 655 QIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +IV++ R+C DCH  +KLI+ +T REI VRDA R+HHFKDG CSC D+W
Sbjct: 563 RIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHHFKDGNCSCNDFW 611



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 175/372 (47%), Gaps = 39/372 (10%)

Query: 106 LNKRYREALELFEILEFEGGFDVGSSTYDALISAC--IGLRSIREVKRVFSYMLSTGFEP 163
           L+ R   AL +   L    GF      + +L+ AC  +G+  +++ K+V +    + F  
Sbjct: 81  LSNRPHRALSISRSL-LSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSD 139

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF---- 219
           D  +++ ++ M+ + G+    R +FD +   N +S   +I+G   SG   EAF LF    
Sbjct: 140 DDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAFRLFRQTP 199

Query: 220 ---LDLW-------------------------EEFSDCGSRTFATMIRASAGLELISVGK 251
              L  W                         E  S       ++++ A A L L  +GK
Sbjct: 200 YRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGK 259

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           Q+H   + +G+   +F+S ALIDMY+KC  +  A+ +F EM  K  V W +II G A HG
Sbjct: 260 QMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHG 319

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVAN 370
            +EEAL LY EM  +GVK +  TF  +I  C+    +   +     +V  HG    +   
Sbjct: 320 QAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHY 379

Query: 371 SALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
           + L+D +S+ G +++A ++   M +  +  +W AL++    HG  + AV + + +L   +
Sbjct: 380 TCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAVRIADHLL--NL 437

Query: 430 RPNHVTFLAVLS 441
           +P   +   +LS
Sbjct: 438 KPEDPSSYILLS 449



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 6/224 (2%)

Query: 241 SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW 300
           SA  +   + K+LH+  +K G   +  +   L++ Y KCG I+DA  +FD +  +  V W
Sbjct: 13  SAARQSPLLAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAW 72

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL--EHAKQAHAGL 358
            +++    L      AL +   +  +G   DHF F+ +++ C  L  L  +  KQ HA  
Sbjct: 73  ASLLTACNLSNRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARF 132

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
               F  D V  S+L+D Y+K+G  +  R VFD +   N ISW  +I+GY   GR  EA 
Sbjct: 133 FLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMISGYARSGRKFEAF 192

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
            LF Q        N   + A++S   +SG     + +F  M  +
Sbjct: 193 RLFRQTPYR----NLFAWTALISGLVQSGNGVDAFHLFVEMRHE 232



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 101/219 (46%), Gaps = 2/219 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I  LV +    +A  LF  +  EG          +++ AC  L      K++   +++ G
Sbjct: 210 ISGLVQSGNGVDAFHLFVEMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLG 269

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           +E  L++ N ++ M+ +C  ++ A+ +F EM  +++VS   II G    G   EA  L+ 
Sbjct: 270 YESCLFISNALIDMYAKCSDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYD 329

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSCALIDMYSKC 279
           ++          TF  +I A +   L+S G+ L    ++  G   ++     L+D++S+ 
Sbjct: 330 EMVLAGVKPNEVTFVGLIHACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRS 389

Query: 280 GSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEAL 317
           G +++A+ +   M        W  +++    HG ++ A+
Sbjct: 390 GHLDEAENLIRTMPVNPDEPTWAALLSSCKRHGNTQMAV 428


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/629 (34%), Positives = 347/629 (55%), Gaps = 41/629 (6%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           ++A++LF  +  +      S T   +ISAC  L  +   ++V+ ++  +G E +  M + 
Sbjct: 216 KDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISA 275

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ M+++C  +  A+RLFDE    NL  CN + +  +  G   EA    L +     D G
Sbjct: 276 LVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEA----LGVLNLMMDSG 331

Query: 231 SR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            R    +  + I + + L  I  GK  H   L+ GF     +  ALIDMY KC   + A 
Sbjct: 332 IRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAF 391

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHG-------------------------------YSEE 315
            +FD MS KT V WN+I+AGY  +G                                 EE
Sbjct: 392 RIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEE 451

Query: 316 ALDLYYEMRDSG-VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           A+++++ M+    V +D  T   I   C  L +L+ AK  +  + ++   LD+   + LV
Sbjct: 452 AIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLV 511

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D +S+ G  E A  +F+ +  ++V +W A I      G  E A+ELF +M+  G++P+ V
Sbjct: 512 DMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGV 571

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
            F+  L+AC   GL ++G EIF SM + H + P  +HY CM++LLGR GLL+EA  LI+ 
Sbjct: 572 VFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKD 631

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            P +    +W +LL ACRV GN+E+  FAAEK+  + PE+  +YV+L N+Y S+G+  + 
Sbjct: 632 MPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDM 691

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
           A+V  +++ KGLR  P  S I+++ + H F SGD+SH + ++I   +D +    S  G+V
Sbjct: 692 AKVRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLDELSQRASDLGHV 751

Query: 615 PEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLI 673
           P+   +L DVDEQE+  +LS HSEKLA+AFGLI+++  T ++IV++ R+C  CH+  K  
Sbjct: 752 PDLSNVLMDVDEQEKIFMLSRHSEKLAMAFGLISSNKGTTIRIVKNLRVCSYCHSFAKFA 811

Query: 674 AMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           + V  REI++RD +RFH  + G CSC D+
Sbjct: 812 SKVYNREIILRDNNRFHFIRQGKCSCSDF 840



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 182/380 (47%), Gaps = 8/380 (2%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +EA+ LF I     G      T+   +S C   R      ++   ++   +  DL+++N 
Sbjct: 115 KEAILLF-IRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNS 173

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW-EEFSDC 229
           ++  +  CG +  AR++FDEM ERN+VS   +I G        +A  LF  +  +E    
Sbjct: 174 LVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIP 233

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
            S T   +I A A LE +  G++++      G   N  +  AL+DMY KC +I+ A+ +F
Sbjct: 234 NSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLF 293

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           DE         N + + Y   G ++EAL +   M DSG++ D  +    I  C++L ++ 
Sbjct: 294 DEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNIL 353

Query: 350 HAKQAHAGLVRHGF-GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
             K  H  ++R+GF   D + N AL+D Y K  R + A  +FD+M  K V++WN+++AGY
Sbjct: 354 WGKSCHGYVLRNGFESWDNICN-ALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGY 412

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
             +G  + A E F  M       N V++  ++SA  +  + E   E+F  M     +   
Sbjct: 413 IENGEVDAAWETFNTM----PEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVD 468

Query: 469 AMHYACMIELLGREGLLDEA 488
            +    +    G  G LD A
Sbjct: 469 GVTMMSIASACGHLGALDLA 488



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/247 (31%), Positives = 134/247 (54%), Gaps = 1/247 (0%)

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK 259
           N +I G   SG   EA LLF+ +          TF   +   A       G Q+H   +K
Sbjct: 102 NSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIK 161

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDL 319
           M +  ++FV  +L+  Y++CG ++ A+ VFDEMSE+  V W ++I GYA   ++++A+DL
Sbjct: 162 MDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDL 221

Query: 320 YYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378
           ++ M RD  V  +  T   +I  C +L  LE  ++ +  +   G  ++ +  SALVD Y 
Sbjct: 222 FFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYM 281

Query: 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438
           K   I+ A+ +FD+    N+   NA+ + Y   G  +EA+ +   M+ +G+RP+ ++ L+
Sbjct: 282 KCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLS 341

Query: 439 VLSACSR 445
            +S+CS+
Sbjct: 342 AISSCSQ 348



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 130/243 (53%), Gaps = 6/243 (2%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED---AQGVFDE-MSEKTTVGWNTIIAG 306
           K  H    K G  D+V     L+    + G+ E    A+ VF+   S  T   +N++I G
Sbjct: 48  KMFHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRG 107

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           YA  G  +EA+ L+  M +SG+  D +TF   + +C +     +  Q H  +++  +  D
Sbjct: 108 YASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKD 167

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +   ++LV FY++ G ++ AR VFD+M  +NV+SW ++I GY      ++AV+LF +M+ 
Sbjct: 168 LFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVR 227

Query: 427 N-GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
           +  + PN VT + V+SAC++    E G +++  + RD  I+   +  + ++++  +   +
Sbjct: 228 DEDVIPNSVTMVCVISACAKLEDLETGEKVYDFI-RDSGIEVNDLMISALVDMYMKCNAI 286

Query: 486 DEA 488
           D A
Sbjct: 287 DIA 289



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 103/219 (47%), Gaps = 4/219 (1%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I  LV    Y EA+E+F  ++ +   +V   T  ++ SAC  L ++   K ++ Y+    
Sbjct: 440 ISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNR 499

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            + D+ +   ++ M  RCG    A  +F+ +  R++ +    I  M  +G+   A  LF 
Sbjct: 500 IQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFN 559

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM-GFG-DNVFVSCALIDMYSK 278
           ++ E+        F   + A     L+  GK++ +   K+ G   ++V   C ++D+  +
Sbjct: 560 EMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGC-MVDLLGR 618

Query: 279 CGSIEDA-QGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
            G +E+A Q + D  +E   V WN+++A   + G  E A
Sbjct: 619 AGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMA 657


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/617 (34%), Positives = 336/617 (54%), Gaps = 41/617 (6%)

Query: 124 GGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGF-EPDLYMRNRVLLMHVRCGMMI 182
            GF +   ++  L+ A   L ++     +       GF   D ++++ ++ M+  CG ++
Sbjct: 109 NGFPLDRFSFPPLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIM 168

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFA----TMI 238
           DAR LFD+M  R++V+ N++I G   +  Y       L L+EE    G+   A    T++
Sbjct: 169 DARFLFDKMSHRDVVTWNIMIDGYSQNAHYDHV----LKLYEEMKTSGTEPDAIILCTVL 224

Query: 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS----------------- 281
            A A    +S GK +H      GF     +  +L++MY+ CG+                 
Sbjct: 225 SACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMV 284

Query: 282 --------------IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
                         ++DA+ +FD M EK  V W+ +I+GYA      EAL L+ EM+   
Sbjct: 285 VSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRR 344

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           +  D  T   +I  C  + +L  AK  H    ++GFG  +  N+AL+D Y+K G +  AR
Sbjct: 345 IVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAR 404

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
            VF+ M  KNVISW+++I  +  HG  + A+ LF +M    + PN VTF+ VL ACS +G
Sbjct: 405 EVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAG 464

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
           L E G + F SM  +H+I P+  HY CM++L  R   L +A  LI   PF     +W +L
Sbjct: 465 LVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSL 524

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           ++AC+ +G +ELG+FAA +L  +EP+     VVL NIY    +  +   V + ++ KG+ 
Sbjct: 525 MSACQNHGEIELGEFAATRLLELEPDHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGVS 584

Query: 568 MLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD-VDE 626
              ACS IEV  + HVF+  D+ H Q+ EIY+K+D ++ ++   GY P    +L D  +E
Sbjct: 585 KEKACSRIEVNNEVHVFMMADRYHKQSDEIYKKLDAVVSQLKLVGYTPSTSGILVDLEEE 644

Query: 627 QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
           +++ V+ +HSEKLA+ +GLI     + ++IV++ RIC DCH+ +KL++ V   EIV+RD 
Sbjct: 645 EKKEVVLWHSEKLALCYGLIGERKESCIRIVKNLRICEDCHSFMKLVSKVHRIEIVMRDR 704

Query: 687 SRFHHFKDGMCSCGDYW 703
           +RFHHF  G+CSC DYW
Sbjct: 705 TRFHHFNGGICSCRDYW 721



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/451 (24%), Positives = 203/451 (45%), Gaps = 79/451 (17%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A  LF  +P       N ++              L+L L          +F  +++A + 
Sbjct: 68  ALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSK 127

Query: 244 LELISVGKQLHSCALKMGF-GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
           L  +++G ++H  A K GF   + F+  ALI MY+ CG I DA+ +FD+MS +  V WN 
Sbjct: 128 LSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNI 187

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I GY+ + + +  L LY EM+ SG + D      ++  C    +L + K  H  +  +G
Sbjct: 188 MIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNG 247

Query: 363 FGL-------------------------------DIVANSALVDFYSKWGRIEDARHVFD 391
           F +                                +V ++A++  Y+K G ++DAR +FD
Sbjct: 248 FRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFD 307

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG-LSE 450
           +M+ K+++ W+A+I+GY    +  EA++LF +M    + P+ +T L+V+SAC+  G L +
Sbjct: 308 RMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQ 367

Query: 451 RGW----------------------------------EIFQSMSRDHKIKPRAMHYACMI 476
             W                                  E+F++M R + I      ++ MI
Sbjct: 368 AKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVIS-----WSSMI 422

Query: 477 ELLGREGLLDEAFAL---IRGAPFKTTKNMWAALLTACRVNGNLELG-KFAAEKL--YGM 530
                 G  D A AL   ++    +     +  +L AC   G +E G KF +  +  + +
Sbjct: 423 NAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRI 482

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            P++  +Y  ++++Y  +  L++A E+I T+
Sbjct: 483 SPQR-EHYGCMVDLYCRANHLRKAMELIETM 512



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 177/370 (47%), Gaps = 15/370 (4%)

Query: 74  KIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTY 133
           K+Y E     + PD  +       C+    L   K   + ++       + GF VGS   
Sbjct: 203 KLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIK-------DNGFRVGSHIQ 255

Query: 134 DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193
            +L++      ++   + V+  + S      + +   +L  + + GM+ DAR +FD M E
Sbjct: 256 TSLVNMYANCGAMHLAREVYDQLPSK----HMVVSTAMLSGYAKLGMVQDARFIFDRMVE 311

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL 253
           ++LV  + +I+G  +S   LEA  LF ++          T  ++I A A +  +   K +
Sbjct: 312 KDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWI 371

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           H+ A K GFG  + ++ ALIDMY+KCG++  A+ VF+ M  K  + W+++I  +A+HG +
Sbjct: 372 HTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDA 431

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSA 372
           + A+ L++ M++  ++ +  TF  ++  C+    +E  ++  + ++  H           
Sbjct: 432 DSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGC 491

Query: 373 LVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           +VD Y +   +  A  + + M    NVI W +L++   NHG  E  +  F    L  + P
Sbjct: 492 MVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIE--LGEFAATRLLELEP 549

Query: 432 NHVTFLAVLS 441
           +H   L VLS
Sbjct: 550 DHDGALVVLS 559


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 209/629 (33%), Positives = 347/629 (55%), Gaps = 76/629 (12%)

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
           ++ ++ V S ++S     +  +  +++  +     +  AR++FDE+PERN++  N++I  
Sbjct: 56  LKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRS 115

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
            +++G Y E   +F  +          TF  +++A +    I +GK++H  A K+G    
Sbjct: 116 YVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSST 175

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325
           +FV   L+ MY KCG + +A+ V DEMS +  V WN+++AGYA +   ++AL++  EM  
Sbjct: 176 LFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREME- 234

Query: 326 SGVKMDH-----------------------------------FTFSMIIRICTRLASLEH 350
             VK+ H                                    +++++I +  + A    
Sbjct: 235 -SVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVE 293

Query: 351 AKQAHAGLVRHGFGLDIVA----------NSAL-------------------------VD 375
           A + ++G+   GF  D V+           SAL                         +D
Sbjct: 294 AVELYSGMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALID 353

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            Y+K G ++ AR VF+ M  ++V+SW A+I+ YG  GRG +AV LF +M  +G+ P+ + 
Sbjct: 354 MYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIA 413

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
           F+  L+ACS +GL E G   F+ M+  +KI PR  H ACM++LLGR G + EA+  I+  
Sbjct: 414 FVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEM 473

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           P +  + +W ALL ACRV+ N ++G  AA+KL+ + PE+   YV+L NIY  +G+ +E  
Sbjct: 474 PMEPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVT 533

Query: 556 EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
            +   ++ KGL+  P  S +EV +  H FL GD+SH Q+ EIYR++D ++ ++ + GYVP
Sbjct: 534 NIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGYVP 593

Query: 616 EEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDW---TPLQIVQSHRICCDCHNAIK 671
           + ++ L DV+E+++   L+ HSEKLA+ F L+NT +      ++I ++ RIC DCH A K
Sbjct: 594 DSESALHDVEEEDKETHLAVHSEKLAIVFALMNTEEEDSNNAIRITKNLRICGDCHVAAK 653

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           LI+ +T REI++RD +RFH F+ G+CSC 
Sbjct: 654 LISQITSREIIIRDTNRFHVFRFGVCSCA 682



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/213 (23%), Positives = 99/213 (46%), Gaps = 13/213 (6%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA+EL+  +E +G F+  + +  +++ AC    ++   K++  Y+      P+L + N +
Sbjct: 293 EAVELYSGMEADG-FEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENAL 351

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG +  AR +F+ M  R++VS   +I+    SG   +A  LF  + +      S
Sbjct: 352 IDMYAKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDS 411

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS------CALIDMYSKCGSIEDA 285
             F T + A +   L+  G+   SC   M   D+  ++        ++D+  + G +++A
Sbjct: 412 IAFVTTLAACSHAGLLEEGR---SCFKLM--TDHYKITPRLEHLACMVDLLGRAGKVKEA 466

Query: 286 QGVFDEMS-EKTTVGWNTIIAGYALHGYSEEAL 317
                EM  E     W  ++    +H  ++  L
Sbjct: 467 YKFIQEMPMEPNERVWGALLGACRVHSNTDIGL 499



 Score = 56.2 bits (134), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 62/128 (48%)

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           T  M+ ++      L+  +  H+ ++      +      L+  Y+    +  AR VFD++
Sbjct: 42  TAFMLGQVLDTYPDLKTLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEI 101

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             +NVI  N +I  Y N+G   E +++F  M    ++P+H TF  VL ACS SG    G 
Sbjct: 102 PERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGK 161

Query: 454 EIFQSMSR 461
           +I  S ++
Sbjct: 162 KIHGSATK 169


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/469 (40%), Positives = 296/469 (63%), Gaps = 6/469 (1%)

Query: 240 ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS--IEDAQGVFDEMSEKTT 297
           ASA +    V   LH+   K+GF  N  V   ++D Y+K GS  +E A+ VFD M E+  
Sbjct: 207 ASARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDV 265

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRD--SGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
           V WN++IA YA +G S EA+ LY +M +   G+K +    S ++  C    +++  K+ H
Sbjct: 266 VSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIH 325

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
             +VR G   ++   +++VD YSK GR+E A   F K+  KN++SW+A+I GYG HGRG+
Sbjct: 326 NQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQ 385

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
           EA+E+F +M  +G+RPN++TF++VL+ACS +GL + G   + +M ++  I+    HY CM
Sbjct: 386 EALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCM 445

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535
           ++LLGR G LDEA++LI+    K    +W ALL+ACR++ N+EL + + ++L+ ++    
Sbjct: 446 VDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNS 505

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTK 595
             YV+L NIY  +   K+   +   ++ + +   P  S  E+K + ++F  GD+SH Q  
Sbjct: 506 GYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHI 565

Query: 596 EIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPL 654
           EIY  +++++  + + GYVP   ++L D+DE+E+   L  HSEKLAVAF L+N+   + +
Sbjct: 566 EIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVI 625

Query: 655 QIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            I+++ R+C DCH A+K I  +T REI++RD  RFHHFKDG+CSC DYW
Sbjct: 626 HIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 74/255 (29%), Positives = 139/255 (54%), Gaps = 9/255 (3%)

Query: 160 GFEPDLYMRNRVLLMHVRCGM--MIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
           GFE +  + N +L  + + G   +  AR++FD M ER++VS N +IA    +G   EA  
Sbjct: 228 GFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIG 286

Query: 218 LFLDLWEEFS--DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
           L+  +        C +   + ++ A A    I  GK++H+  ++MG  +NV+V  +++DM
Sbjct: 287 LYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDM 346

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           YSKCG +E A   F ++ EK  + W+ +I GY +HG  +EAL+++ EM+ SG++ ++ TF
Sbjct: 347 YSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITF 406

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLD--IVANSALVDFYSKWGRIEDARHVFDKM 393
             ++  C+    L+  +  +  + +  FG++  +     +VD   + G +++A  +  +M
Sbjct: 407 ISVLAACSHAGLLDEGRYWYNAM-KQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEM 465

Query: 394 LCK-NVISWNALIAG 407
             K +   W AL++ 
Sbjct: 466 KVKPDAAIWGALLSA 480



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 105/222 (47%), Gaps = 5/222 (2%)

Query: 99  SQIEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           S I     N    EA+ L+ ++L   GG    +    A++ AC    +I+  KR+ + ++
Sbjct: 270 SMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVV 329

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
             G E ++Y+   ++ M+ +CG +  A R F ++ E+N++S + +I G    G   EA  
Sbjct: 330 RMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALE 389

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS--CALIDM 275
           +F ++          TF +++ A +   L+  G+  ++ A+K  FG    V     ++D+
Sbjct: 390 IFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYN-AMKQEFGIEAGVEHYGCMVDL 448

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYSEEA 316
             + G +++A  +  EM  K     W  +++   +H   E A
Sbjct: 449 LGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELA 490


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/596 (34%), Positives = 335/596 (56%), Gaps = 5/596 (0%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R+ +AL L +  +F     +        +SA   +RS    ++   Y + +G +   Y+ 
Sbjct: 91  RHSDALALLKAADFS----LNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVC 146

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N VL M+ +C  + DA ++F+ +   ++ + N +I G +D G++  +  +   +  E   
Sbjct: 147 NAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQ 206

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               ++  ++   A  + + +G Q+H+ ALK     NV+V  AL+DMY KC    DA   
Sbjct: 207 WDHVSYVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSA 266

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F+ + EK  V W  ++  Y  +   E+AL L+ ++   GV+ + FT+++ +  C  LA+L
Sbjct: 267 FEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAAL 326

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
           ++     A  ++ G    +   +AL++ YSK G I DA  VF  M  ++V+SWN++I GY
Sbjct: 327 KNGNALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGY 386

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
            +HG   EA+ +F  MLL  + P++VTF+ VL AC++ GL + G      M ++  IKP 
Sbjct: 387 AHHGLAREAMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPG 446

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
             HY CM+ LL R G LDEA   I      T    W +LL++C+V  N  LG   AE++ 
Sbjct: 447 REHYTCMVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQIL 506

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
            ++P  +  YV+L N+Y  + +     +V + +R +G+R  P  SWI+V  + HVF S D
Sbjct: 507 QLKPNDVGTYVLLSNMYAKANRWDGVVKVRKLMRERGVRKEPGVSWIQVGSEVHVFTSED 566

Query: 589 QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLIN 647
           ++H    +I  K+  ++ +I   GYVP    +L DV+ EQ++  L YHSEK+A+AFGLI+
Sbjct: 567 KNHKWINQITIKLKELIGQIKVIGYVPNCAVVLHDVEAEQKEEHLMYHSEKMALAFGLIH 626

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + +   ++I+++ RIC DCH AIKLI++VT R+IVVRD  RFH   DG+CSC DYW
Sbjct: 627 SPEGETIRIMKNLRICDDCHVAIKLISVVTRRKIVVRDTVRFHCIDDGVCSCDDYW 682



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 197/437 (45%), Gaps = 52/437 (11%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D+   N ++  + +CG +  AR++FD MP RN VS N++++G   +G + +A  L     
Sbjct: 44  DVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYASAGRHSDALALLKA-- 101

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
            +FS       +T + A+A +    +G+Q H  A+K G  ++ +V  A++ MY +C  +E
Sbjct: 102 ADFS-LNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVE 160

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
           DA  VF+ +S      +N++I G+   G  + ++ +   M     + DH ++  ++  C 
Sbjct: 161 DAVKVFENVSGFDIFAFNSMINGFLDLGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCA 220

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
               L    Q HA  ++     ++   SALVD Y K     DA   F+ +  KNV+SW A
Sbjct: 221 STKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTA 280

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC-------------------- 443
           ++  Y  + R E+A++LF  + + G+RPN  T+   L++C                    
Sbjct: 281 VMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKTG 340

Query: 444 ---------------SRSGLSERGWEIFQSMS-RDHKIKPRAMHYACMIELLGREGLLDE 487
                          S+SG     W +F SM  RD       + +  +I      GL  E
Sbjct: 341 HWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRD------VVSWNSVIIGYAHHGLARE 394

Query: 488 AFALIRG---APFKTTKNMWAALLTACRVNGNLELGKFAAE---KLYGMEPEKLSNYVVL 541
           A  +      A    +   +  +L AC   G ++ G +      K  G++P +  +Y  +
Sbjct: 395 AMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGR-EHYTCM 453

Query: 542 LNIYNSSGKLKEAAEVI 558
           + +   +G+L EA + I
Sbjct: 454 VGLLCRAGRLDEAEQFI 470



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 95/201 (47%), Gaps = 3/201 (1%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N+R+ +AL+LF  LE E G      TY   +++C GL +++    + +  + TG    L 
Sbjct: 288 NERFEDALQLFLDLEIE-GVRPNEFTYAVALNSCAGLAALKNGNALSASAMKTGHWGALS 346

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N ++ M+ + G + DA R+F  MP R++VS N +I G    G   EA  +F D+    
Sbjct: 347 VCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGLAREAMCVFHDMLLAE 406

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSCALIDMYSKCGSIEDA 285
                 TF  ++ A A L L+  G    +  +K MG          ++ +  + G +++A
Sbjct: 407 IVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREHYTCMVGLLCRAGRLDEA 466

Query: 286 -QGVFDEMSEKTTVGWNTIIA 305
            Q +         V W ++++
Sbjct: 467 EQFILSNCIGTDVVAWKSLLS 487



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            K  HA ++R     D++ ++ L+ FY K GR+  AR +FD M  +N +S N L++GY +
Sbjct: 30  GKAIHAQMIRAAH-FDVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYAS 88

Query: 411 HGRGEEAVELFE 422
            GR  +A+ L +
Sbjct: 89  AGRHSDALALLK 100


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 203/564 (35%), Positives = 318/564 (56%), Gaps = 4/564 (0%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV--RCGMMIDARRLFDEMPERNLVSCNM 201
           +S+ E K+V +++L  G   D +  + ++      R G M  A  +F ++ E      N 
Sbjct: 41  KSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEPGSFEYNT 100

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           +I G ++S +  EA LL++++ E   +  + T+  +++A + L  +  G Q+H+   K G
Sbjct: 101 MIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAG 160

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
              +VFV   LI+MY KCG+IE A  VF++M EK+   W++II  +A      E L L  
Sbjct: 161 LEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLG 220

Query: 322 EMRDSGV-KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380
           +M   G  + +       +  CT L S    +  H  L+R+   L++   ++L+D Y K 
Sbjct: 221 DMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSLIDMYVKS 280

Query: 381 GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
           G +E    VF  M  KN  S+  +I G   HGRG EA+ +F  ML  G+ P+ V ++ VL
Sbjct: 281 GSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVL 340

Query: 441 SACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTT 500
           SACS +GL   G + F  +  +HKIKP   HY CM++L+GR G+L  A+ LI+  P K  
Sbjct: 341 SACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKPN 400

Query: 501 KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560
             +W +LL+AC+V+ NLE+G+ AAE ++ +      +Y+VL N+Y  + K  + A +   
Sbjct: 401 DVVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMYARAKKWADVARIRTE 460

Query: 561 LRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTL 620
           +  K L   P  S +E  +  + F+S D+S  Q + IY  + +M  ++   GY P+   +
Sbjct: 461 MAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEGYTPDMSQV 520

Query: 621 LPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGR 679
           L DVDE E+R  L +HS+KLA+AF LI TS+ + ++I ++ R+C DCH   K I+++  R
Sbjct: 521 LLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCNDCHTYTKFISVIYER 580

Query: 680 EIVVRDASRFHHFKDGMCSCGDYW 703
           EI VRD +RFHHFKDG CSC DYW
Sbjct: 581 EITVRDRNRFHHFKDGTCSCKDYW 604



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 157/338 (46%), Gaps = 11/338 (3%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL L+ +   E G +  + TY  ++ AC  L +++E  ++ +++   G E D++++N +
Sbjct: 113 EALLLY-VEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIHAHVFKAGLEGDVFVQNGL 171

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG +  A  +F++M E+++ S + II        + E  +L  D+  E      
Sbjct: 172 INMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAE 231

Query: 232 RT-FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
            +   + + A   L   + G+ +H   L+     NV V  +LIDMY K GS+E    VF 
Sbjct: 232 ESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTSLIDMYVKSGSLEKGLCVFQ 291

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            M++K    +  II G A+HG   EAL ++ +M + G+  D   +  ++  C+    +  
Sbjct: 292 NMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPDDVVYVGVLSACSHAGLVNE 351

Query: 351 AKQAHAGL-VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGY 408
             Q    L   H     I     +VD   + G ++ A  +   M  K N + W +L++  
Sbjct: 352 GLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLIKSMPIKPNDVVWRSLLSAC 411

Query: 409 GNHGR---GEEAVE-LFEQMLLNGMRPNHVTFLAVLSA 442
             H     GE A E +F+   LN   P     LA + A
Sbjct: 412 KVHHNLEIGEIAAENIFK---LNQHNPGDYLVLANMYA 446



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 4/174 (2%)

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF--YSKWGRIEDARHVFDKMLCK 396
           + +  R  S+E  KQ HA +++ G   D    S LV     S+WG +E A  +F ++   
Sbjct: 34  LSLLKRCKSMEEFKQVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEEP 93

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
               +N +I G  N    EEA+ L+ +ML  G+ P++ T+  VL ACS  G  + G +I 
Sbjct: 94  GSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQIH 153

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
             + +   ++        +I + G+ G ++ A  +      K+  + W++++ A
Sbjct: 154 AHVFKA-GLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVAS-WSSIIGA 205



 Score = 45.4 bits (106), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 89/206 (43%), Gaps = 8/206 (3%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + E L L   +  EG      S   + +SAC  L S    + +   +L    E ++ ++ 
Sbjct: 212 WHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKT 271

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+V+ G +     +F  M ++N  S  +II G+   G   EA  +F D+ EE    
Sbjct: 272 SLIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAP 331

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC----ALIDMYSKCGSIEDA 285
               +  ++ A +   L++ G Q   C  ++ F   +  +      ++D+  + G ++ A
Sbjct: 332 DDVVYVGVLSACSHAGLVNEGLQ---CFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGA 388

Query: 286 QGVFDEMSEKTT-VGWNTIIAGYALH 310
             +   M  K   V W ++++   +H
Sbjct: 389 YDLIKSMPIKPNDVVWRSLLSACKVH 414


>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
          Length = 773

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 192/541 (35%), Positives = 329/541 (60%), Gaps = 13/541 (2%)

Query: 167 MRNRVLLMHVRCGMMIDARRLFDE------MPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           ++ +++ +   CG + +ARR+F++      +PE   V+  +   G   +G   EA LL+ 
Sbjct: 110 LKGKLITLFSVCGRVDEARRVFEDGGEDVDLPESVWVAMGI---GYSRNGYPKEALLLYY 166

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           ++  +F   G+  F+  ++A + L  +  G+ +H+  LK     +  V+ AL+ +YS+ G
Sbjct: 167 EMVCQFGQLGNFAFSMALKACSDLGDLRTGRAVHAQVLKATEDPDQVVNNALLRLYSEDG 226

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
             E+A  +FD M  +  V WN++IAG        EA++ +  M+  G+     T + I+ 
Sbjct: 227 CFEEALRMFDGMPHRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSWVTLTTILP 286

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
           +C R+ +L   K+ HA +V+     D    ++LVD Y+K G ++  R VF+ M  K++ S
Sbjct: 287 VCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTS 346

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           WN LI GY  +GR  EA+E F++M+ +G  P+ +TF+A+LS CS +GL++ G  +F+ M 
Sbjct: 347 WNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGCRLFEMMK 406

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
            DH I P   HYAC++++LGR G + EA  +++  PFK T ++W +LL +CR++GN+ L 
Sbjct: 407 MDHGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLA 466

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT-LRRKGLRMLPACSWIEVKK 579
           +  A++L+ +EP    NYV+L NIY ++G + E+ +V+R  + ++G+     CSW+++K 
Sbjct: 467 EAVAKRLFELEPNNAGNYVMLSNIYANAG-MWESVKVVREFMEKRGMTKEAGCSWLQIKS 525

Query: 580 QPHVFLSGDQSHVQTKEIYRKV-DRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSE 637
           + H F++G  +  +    Y+KV  R+M  + + GYVP+   +L DV E+ + + +  HSE
Sbjct: 526 KIHTFVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYVPDTGVVLHDVSEEMRAMWVCGHSE 585

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           +LA  F LINT+   P++I ++ R+C DCH+ +K ++ VTGR IV+RD +RFHHFKDG+C
Sbjct: 586 RLATMFALINTASGMPIRITKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFHHFKDGVC 645

Query: 698 S 698
           S
Sbjct: 646 S 646



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 161/616 (26%), Positives = 266/616 (43%), Gaps = 75/616 (12%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N   +EAL L+  +  + G  +G+  +   + AC  L  +R  + V + +L    +PD  
Sbjct: 155 NGYPKEALLLYYEMVCQFG-QLGNFAFSMALKACSDLGDLRTGRAVHAQVLKATEDPDQV 213

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N +L ++   G   +A R+FD MP RNLVS N +IAG++      EA   F  +  + 
Sbjct: 214 VNNALLRLYSEDGCFEEALRMFDGMPHRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKG 273

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 T  T++   A +  +  GK++H+  +K     +  V  +L+DMY+KCG+++  +
Sbjct: 274 MGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCR 333

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VF+ M  K    WNT+I GYA++G   EA++ + EM  SG   D  TF  ++  C+   
Sbjct: 334 RVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCS--- 390

Query: 347 SLEHAKQAHAGL-------VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
              HA  A  G        + HG    +   + LVD   + GRI++A  +   M  K   
Sbjct: 391 ---HAGLADDGCRLFEMMKMDHGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTG 447

Query: 400 S-WNALIAGYGNHGRGE--EAV--ELFEQMLLNGMRPNHVTFLAVLSAC-SRSGLSERGW 453
           S W +L+     HG     EAV   LFE      + PN+     +LS   + +G+ E   
Sbjct: 448 SIWGSLLNSCRLHGNVPLAEAVAKRLFE------LEPNNAGNYVMLSNIYANAGMWESVK 501

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTT---KNMWAALLTA 510
            + + M +    K     +  +   +         F       F+ +   K +W  L+ A
Sbjct: 502 VVREFMEKRGMTKEAGCSWLQIKSKI-------HTFVAGGSNEFRNSVEYKKVWKRLMEA 554

Query: 511 CRVNGNL-ELGKF---AAEKLYGM----EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
               G + + G      +E++  M      E+L+    L+N   +SG        IR   
Sbjct: 555 MEEVGYVPDTGVVLHDVSEEMRAMWVCGHSERLATMFALIN--TASGM------PIRI-- 604

Query: 563 RKGLRMLPAC-SWIEV-------------KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
            K LR+   C SW++                + H F  G  S +Q   +Y K+ +  L+ 
Sbjct: 605 TKNLRVCVDCHSWVKTLSKVTGRVIVLRDTNRFHHFKDGVCSSIQISTVY-KIFQENLDG 663

Query: 609 SKHGYVPEEKTLLPDVDEQEQRVLSYHSEK------LAVAFGLINTSDWTPLQIVQSHRI 662
              G     K       EQ    L   S +      LA  F LINT+   P++I ++  +
Sbjct: 664 DTVGNPFASKPAFACGIEQCVCFLPNFSNEGNVDVWLATMFALINTASGMPIRITKNLHV 723

Query: 663 CCDCHNAIKLIAMVTG 678
           C DCH+ +K+++  TG
Sbjct: 724 CVDCHSWVKIVSKNTG 739


>gi|326515584|dbj|BAK07038.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 594

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 197/589 (33%), Positives = 342/589 (58%), Gaps = 22/589 (3%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           ++SAC   R I   ++V  Y +  G +    M N +  ++ + G +    R F   P++N
Sbjct: 1   MLSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKN 60

Query: 196 LVSCNMIIAGMIDSGDYLEAFL-LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           +++   +I+   +  +YL+  L LFLD+ E        T  +++        +S+GKQ+ 
Sbjct: 61  VITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQ 120

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA------ 308
           +   K+G   N+ V  + + +Y + G  ++A  +F+EM   + + WN +I+GYA      
Sbjct: 121 AFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSA 180

Query: 309 ---LHGYSE--EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
              LH  S   +AL L+ ++  S +K D FTFS I+ +C+ + +LE  +Q HA  ++ G 
Sbjct: 181 KDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGC 240

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
             D+V NSALV+ Y+K G IE A   F +M  +  ++W ++I+GY  HGR ++A++LFE 
Sbjct: 241 LSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFED 300

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           M+L+G RPN +TF+++LSACS +GL E     F  M  ++ I+P   HY CM+++  R G
Sbjct: 301 MVLSGARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLG 360

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
            LD+AF+ I+   F+  + +W++L+  CR +GN+EL  +AA++L  ++P+ +  YV+LLN
Sbjct: 361 RLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVIETYVLLLN 420

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           +Y S+G+ ++ A V +  + + + +L   SWI ++ + + F + D +H Q  E+Y+ ++ 
Sbjct: 421 MYISTGRWRDVARVRKLAKHEDVGVLRDRSWIAIRDKVYFFRADDMTHPQATELYQLLEN 480

Query: 604 MMLEISKHGYVPEEKT--LLPDVDEQEQ--------RVLSYHSEKLAVAFGLINTSDWTP 653
           ++ +    GY P +    LL D  E +          ++ +HSE+LAVA GL+ T     
Sbjct: 481 LLEKAKAVGYEPYQNAPELLFDSKEGDDDKPAAAAGSLIKHHSERLAVALGLLETPPGAT 540

Query: 654 LQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           +++ ++  +C DCH++IK  +++  REIVVRD+ R H FKDG CSCGD+
Sbjct: 541 VRVTKNITMCRDCHSSIKYFSLLANREIVVRDSKRLHKFKDGRCSCGDF 589



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 170/318 (53%), Gaps = 15/318 (4%)

Query: 122 FEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMM 181
            EGG      T  +++S C     +   K+V ++    G E +L ++N  + +++R G  
Sbjct: 89  LEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGET 148

Query: 182 IDARRLFDEMPERNLVSCNMIIAG---MIDSGDY--------LEAFLLFLDLWEEFSDCG 230
            +A RLF+EM   ++++ N +I+G   ++DS            +A  LF DL        
Sbjct: 149 DEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSELKPD 208

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
             TF++++   + +  +  G+Q+H+  +K G   +V V+ AL++MY+KCGSIE A   F 
Sbjct: 209 LFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKAFV 268

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
           EM  +T V W ++I+GY+ HG S++A+ L+ +M  SG + +  TF  ++  C+    +E 
Sbjct: 269 EMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSYAGLVEE 328

Query: 351 AKQAHAGLVRHGFGLDIVAN--SALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAG 407
           A++ +  ++R+ + ++ + +    +VD + + GR++DA     +     N   W++L+AG
Sbjct: 329 AER-YFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAG 387

Query: 408 YGNHGRGEEAVELFEQML 425
             +HG  E A    +++L
Sbjct: 388 CRSHGNMELAFYAADRLL 405


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/606 (33%), Positives = 347/606 (57%), Gaps = 6/606 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +  LV N+ Y +AL  F  ++  G      S  + LI+A     ++ + K V +Y +  G
Sbjct: 321 LSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLN-LIAASGRSGNLLKGKEVHAYAIRNG 379

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            + ++ + N ++ M+ +C  +      F+ M E++L+S   IIAG   +  +LEA  LF 
Sbjct: 380 LDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFR 439

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +  +  D       +++RA +GL+  +  +++H    K    D + +  A++++Y + G
Sbjct: 440 KVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLAD-IMLQNAIVNVYGEVG 498

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            I+ A+  F+ +  K  V W ++I     +G   EAL+L+Y ++ + ++ D       + 
Sbjct: 499 HIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALS 558

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
               L+SL+  K+ H  L+R GF L+    S+LVD Y+  G +E++R +F  +  +++I 
Sbjct: 559 ATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLIL 618

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           W ++I   G HG G +A+ LF++M    + P+H+TFLA+L ACS SGL   G   F+ M 
Sbjct: 619 WTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMK 678

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
             ++++P   HYACM++LL R   L+EA+  +R  P K +  +W ALL AC ++ N ELG
Sbjct: 679 YGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELG 738

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
           + AA++L   + E    Y ++ NI+ + G+  +  EV   ++  GL+  P CSWIEV  +
Sbjct: 739 ELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNK 798

Query: 581 PHVFLSGDQSHVQTKEIYRKVDRM--MLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSE 637
            H F++ D+SH QT +IY K+ +   +LE  K GY+ + K +  +V E+E+  + Y HSE
Sbjct: 799 IHTFMARDKSHPQTDDIYLKLAQFTKLLE-KKGGYIAQTKFVFHNVSEEEKTQMLYGHSE 857

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           +LA+ +GL+ T   T ++I ++ RIC DCH   K+ + V+ R +VVRDA+RFHHF+ G+C
Sbjct: 858 RLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDANRFHHFERGLC 917

Query: 698 SCGDYW 703
           SCGD+W
Sbjct: 918 SCGDFW 923



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 186/333 (55%), Gaps = 4/333 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            +  L+  C+  +++ + +++ + +L +      ++  +++LM+ +CG + DA ++FDEM
Sbjct: 48  AHSLLLDLCVAAKALPQGQQLHALLLKSHLSA--FLATKLVLMYGKCGSLRDAVKVFDEM 105

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            ER + S N ++   + SG YLEA  L+ D+        + TF ++++A   L    +G 
Sbjct: 106 SERTIFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGA 165

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE--MSEKTTVGWNTIIAGYAL 309
           ++H  A+K G+G+ VFV  ALI MY KCG +  A+ +FD   M ++ TV WN+II+ +  
Sbjct: 166 EIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVA 225

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G   EAL L+  M++ GV  + +TF   ++     + ++     H  +++     D+  
Sbjct: 226 EGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYV 285

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            +AL+  Y+K GR+EDA  VF+ MLC++ +SWN L++G   +    +A+  F  M  +G 
Sbjct: 286 ANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQ 345

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           +P+ V+ L +++A  RSG   +G E+     R+
Sbjct: 346 KPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRN 378



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 140/475 (29%), Positives = 234/475 (49%), Gaps = 25/475 (5%)

Query: 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP 163
            V + +Y EA+EL++ +   G   + + T+ +++ AC  L   R    +    +  G+  
Sbjct: 120 FVSSGKYLEAIELYKDMRVLG-VAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGE 178

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDE--MPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
            +++ N ++ M+ +CG +  AR LFD   M + + VS N II+  +  G+ LEA  LF  
Sbjct: 179 FVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRR 238

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           + E      + TF   ++       + +G  +H   LK     +V+V+ ALI MY+KCG 
Sbjct: 239 MQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGR 298

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           +EDA  VF+ M  +  V WNT+++G   +    +AL+ + +M++SG K D  +   +I  
Sbjct: 299 MEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAA 358

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
             R  +L   K+ HA  +R+G   ++   + LVD Y+K   ++   H F+ M  K++ISW
Sbjct: 359 SGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISW 418

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW--EIFQSM 459
             +IAGY  +    EA+ LF ++ + GM  + +   +VL AC  SGL  R +  EI   +
Sbjct: 419 TTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRAC--SGLKSRNFIREIHGYV 476

Query: 460 -SRDHKIKPRAMHYACMIELLGREGLLD---EAFALIRGAPFKTTKNMWAALLTACRVNG 515
             RD       M    ++ + G  G +D    AF  IR     +    W +++T C  NG
Sbjct: 477 FKRD---LADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVS----WTSMITCCVHNG 529

Query: 516 ----NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
                LEL  F + K   ++P+ ++    L    N S  LK+  E+   L RKG 
Sbjct: 530 LPVEALEL--FYSLKQTNIQPDSIAIISALSATANLS-SLKKGKEIHGFLIRKGF 581



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 157/321 (48%), Gaps = 9/321 (2%)

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G+QLH+  LK     + F++  L+ MY KCGS+ DA  VFDEMSE+T   WN ++  +  
Sbjct: 65  GQQLHALLLKSHL--SAFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVS 122

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G   EA++LY +MR  GV +D  TF  +++ C  L       + H   V+ G+G  +  
Sbjct: 123 SGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFV 182

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
            +AL+  Y K G +  AR +FD ++   ++ +SWN++I+ +   G   EA+ LF +M   
Sbjct: 183 CNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEV 242

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G+  N  TF+A L         + G  I  ++ + +      +  A +I +  + G +++
Sbjct: 243 GVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANA-LIAMYAKCGRMED 301

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNG--NLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545
           A  +      +   + W  LL+    N   +  L  F   +  G +P+++S  + L+   
Sbjct: 302 AGRVFESMLCRDYVS-WNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVS-VLNLIAAS 359

Query: 546 NSSGKLKEAAEVIRTLRRKGL 566
             SG L +  EV     R GL
Sbjct: 360 GRSGNLLKGKEVHAYAIRNGL 380


>gi|356503769|ref|XP_003520676.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Glycine max]
          Length = 874

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 213/631 (33%), Positives = 352/631 (55%), Gaps = 40/631 (6%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           Y  A  LF  ++    F V   T   L++A     S+ E ++V ++ +  G E DL + N
Sbjct: 247 YDTAFRLFRNMQATDAFRVDDFTLSILLTASA---SLMEGQQVHAHAVKLGLETDLNVGN 303

Query: 170 RVLLMHVRCGMMID-------------------------------ARRLFDEMPERNLVS 198
            ++  + + G + D                               A ++FDEMPE+N VS
Sbjct: 304 GLIGFYSKFGNVDDVEWLFEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEMPEKNSVS 363

Query: 199 CNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCAL 258
            N ++AG   +    EA  LF+ + EE  +    +  +++ A   L    V KQ+H  A+
Sbjct: 364 YNTVLAGFCRNEQGFEAMRLFVRMVEEGLELTDFSLTSVVDACGLLGDYKVSKQVHGFAV 423

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD--EMSEKTTVGWNTIIAGYALHGYSEEA 316
           K GFG N +V  AL+DMY++CG + DA  +F   E+ E ++V W  +I GYA +G  EEA
Sbjct: 424 KFGFGSNGYVEAALLDMYTRCGRMVDAGKMFLRWELEEFSSVVWTAMICGYARNGQPEEA 483

Query: 317 LDLYYEMRDSG-VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           + L++  R  G V MD    + ++ +C  +  L+  KQ H  +++ G G ++   +A+V 
Sbjct: 484 IYLFHVGRSDGKVIMDEVAAASMLGLCGTIGHLDMGKQIHCHVIKCGLGFNLEVGNAVVS 543

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            Y K G ++DA  VF  M C ++++WN LI+G   H +G+ A+E++ +ML  G++PN VT
Sbjct: 544 MYFKCGSVDDAMKVFGDMPCTDIVTWNTLISGNLMHRQGDRALEIWVEMLGEGIKPNQVT 603

Query: 436 FLAVLSACSRSGLS--ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
           F+ ++SA  ++ L+  +    +F SM   ++I+P + HYA  I +LG  GLL EA   I 
Sbjct: 604 FVLIISAYRQTNLNLVDDCRNLFNSMRTVYQIEPTSRHYASFISVLGHWGLLQEALETIN 663

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
             PF+ +  +W  LL  CR++ N  +GK+AA+ +  +EP+  S ++++ N+Y++SG+   
Sbjct: 664 NMPFQPSALVWRVLLDGCRLHKNELIGKWAAQNILALEPKDPSTFILVSNLYSASGRWDR 723

Query: 554 AAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGY 613
           +  V   +R KG R  PA SWI  +K+ + F   D+SH Q K+I R ++ ++LE  K GY
Sbjct: 724 SEMVREDMREKGFRKHPAQSWIVCEKKINSFYPRDRSHPQEKDIQRGLEILILECLKIGY 783

Query: 614 VPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKL 672
            P+   +L +V+E  +++ L +HS KLA  +G++ T    P++IV++  +C DCH  +K 
Sbjct: 784 EPDTSFVLHEVEEHHKKIFLFHHSAKLAATYGILMTKPGKPIRIVKNILLCGDCHAFLKY 843

Query: 673 IAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++VT R+I +RD+S FH F +G CSC D W
Sbjct: 844 ASIVTKRDIFLRDSSGFHCFSNGQCSCKDCW 874



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 191/410 (46%), Gaps = 47/410 (11%)

Query: 55  QRVECCLMEQGLKPRPKPNKIYTEELKESSLPDTQ---MKKPSAGICSQIEKLVLNKRYR 111
           + V   L+++  +     N + +  LK +  P      +  PS  + S    +    ++R
Sbjct: 84  KTVHATLLKRDEEDTHLSNALISTYLKLNLFPHALRLFLSLPSPNVVSYTTLISFLSKHR 143

Query: 112 E--ALELFEILEFEGGFDVGSSTYDALISACIGL-RSIREVKRVFSYMLSTGFEPDLYMR 168
           +  AL LF  +           TY A+++AC  L        ++ +  L T      ++ 
Sbjct: 144 QHHALHLFLRMTTRSHLPPNEYTYVAVLTACSSLLHHFHFGLQLHAAALKTAHFDSPFVA 203

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N ++ ++ +      A +LF+++P R++ S N II+  +    Y  AF LF ++  + +D
Sbjct: 204 NALVSLYAKHASFHAALKLFNQIPRRDIASWNTIISAALQDSLYDTAFRLFRNM--QATD 261

Query: 229 C---GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED- 284
                  T + ++ ASA L     G+Q+H+ A+K+G   ++ V   LI  YSK G+++D 
Sbjct: 262 AFRVDDFTLSILLTASASL---MEGQQVHAHAVKLGLETDLNVGNGLIGFYSKFGNVDDV 318

Query: 285 ------------------------------AQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
                                         A  VFDEM EK +V +NT++AG+  +    
Sbjct: 319 EWLFEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEMPEKNSVSYNTVLAGFCRNEQGF 378

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EA+ L+  M + G+++  F+ + ++  C  L   + +KQ H   V+ GFG +    +AL+
Sbjct: 379 EAMRLFVRMVEEGLELTDFSLTSVVDACGLLGDYKVSKQVHGFAVKFGFGSNGYVEAALL 438

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVIS--WNALIAGYGNHGRGEEAVELFE 422
           D Y++ GR+ DA  +F +   +   S  W A+I GY  +G+ EEA+ LF 
Sbjct: 439 DMYTRCGRMVDAGKMFLRWELEEFSSVVWTAMICGYARNGQPEEAIYLFH 488



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 192/406 (47%), Gaps = 55/406 (13%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           E D ++ N ++  +++  +   A RLF  +P  N+VS   +I+ +     +  A  LFL 
Sbjct: 95  EEDTHLSNALISTYLKLNLFPHALRLFLSLPSPNVVSYTTLISFLSKHRQH-HALHLFLR 153

Query: 222 LW-EEFSDCGSRTFATMIRA-SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
           +           T+  ++ A S+ L     G QLH+ ALK    D+ FV+ AL+ +Y+K 
Sbjct: 154 MTTRSHLPPNEYTYVAVLTACSSLLHHFHFGLQLHAAALKTAHFDSPFVANALVSLYAKH 213

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS-GVKMDHFTFSMI 338
            S   A  +F+++  +    WNTII+        + A  L+  M+ +   ++D FT S++
Sbjct: 214 ASFHAALKLFNQIPRRDIASWNTIISAALQDSLYDTAFRLFRNMQATDAFRVDDFTLSIL 273

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +   T  ASL   +Q HA  V+ G   D+   + L+ FYSK+G ++D   +F+ M  ++V
Sbjct: 274 L---TASASLMEGQQVHAHAVKLGLETDLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDV 330

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           I+W  ++  Y   G    A+++F++M       N V++  VL+   R   +E+G+E  + 
Sbjct: 331 ITWTEMVTAYMEFGLVNLALKVFDEM----PEKNSVSYNTVLAGFCR---NEQGFEAMRL 383

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
             R             M+E    EGL    F+L              +++ AC + G+ +
Sbjct: 384 FVR-------------MVE----EGLELTDFSL-------------TSVVDACGLLGDYK 413

Query: 519 LGK----FAAEKLYGMEPEKLSNYV--VLLNIYNSSGKLKEAAEVI 558
           + K    FA +  +G      + YV   LL++Y   G++ +A ++ 
Sbjct: 414 VSKQVHGFAVKFGFGS-----NGYVEAALLDMYTRCGRMVDAGKMF 454



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 179/386 (46%), Gaps = 21/386 (5%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   +K S    + +     N++  EA+ LF +   E G ++   +  +++ AC  L   
Sbjct: 354 DEMPEKNSVSYNTVLAGFCRNEQGFEAMRLF-VRMVEEGLELTDFSLTSVVDACGLLGDY 412

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD--EMPERNLVSCNMIIA 204
           +  K+V  + +  GF  + Y+   +L M+ RCG M+DA ++F   E+ E + V    +I 
Sbjct: 413 KVSKQVHGFAVKFGFGSNGYVEAALLDMYTRCGRMVDAGKMFLRWELEEFSSVVWTAMIC 472

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL------ISVGKQLHSCAL 258
           G   +G   EA  LF            +     + A++ L L      + +GKQ+H   +
Sbjct: 473 GYARNGQPEEAIYLF-----HVGRSDGKVIMDEVAAASMLGLCGTIGHLDMGKQIHCHVI 527

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
           K G G N+ V  A++ MY KCGS++DA  VF +M     V WNT+I+G  +H   + AL+
Sbjct: 528 KCGLGFNLEVGNAVVSMYFKCGSVDDAMKVFGDMPCTDIVTWNTLISGNLMHRQGDRALE 587

Query: 319 LYYEMRDSGVKMDHFTFSMIIRIC--TRLASLEHAKQAHAGLVRHGFGLDIVAN--SALV 374
           ++ EM   G+K +  TF +II     T L  ++  +     + R  + ++  +   ++ +
Sbjct: 588 IWVEMLGEGIKPNQVTFVLIISAYRQTNLNLVDDCRNLFNSM-RTVYQIEPTSRHYASFI 646

Query: 375 DFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
                WG +++A    + M    + + W  L+ G   H + E   +   Q +L     + 
Sbjct: 647 SVLGHWGLLQEALETINNMPFQPSALVWRVLLDGCRLH-KNELIGKWAAQNILALEPKDP 705

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSM 459
            TF+ V +  S SG  +R   + + M
Sbjct: 706 STFILVSNLYSASGRWDRSEMVREDM 731


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 200/549 (36%), Positives = 317/549 (57%), Gaps = 41/549 (7%)

Query: 157 LSTGFEP-DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           L +GF   DL++R  ++  + + G    AR  FDE P R++  CN+++A  +  G+  EA
Sbjct: 66  LKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEA 125

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
             +F  + E                    +++S    +H                     
Sbjct: 126 RRVFDGMRER-------------------DMVSWNTMIHG-------------------- 146

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           Y+  G ++ A+ VF+ M ++    W+++++ Y     S++AL+L+ EMR + V  D  T 
Sbjct: 147 YAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTM 206

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
             ++  C+ + +L    + H  +  +G  LD+   +AL+D Y+K G IE++  VF  M  
Sbjct: 207 VSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPV 266

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           K+V++W+++I G  NHG G +A+ LF +ML  G++PN VTF+ VL +C+  GL   G + 
Sbjct: 267 KDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKY 326

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F SMS  H + P+  HY CM++LLGR G ++EA  LIR  PF+    +W ALL ACR+  
Sbjct: 327 FSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYK 386

Query: 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575
           N+E+ + A  KL  ++P    +YV+L NIY  +   +  AE+ RTLRR+ ++ +P  S I
Sbjct: 387 NVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSI 446

Query: 576 EVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSY 634
           E +   H F+SGD+SH ++KEIY+ +  MM  + + GY P    +L D+DEQ ++R L+ 
Sbjct: 447 EWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQSKERALAE 506

Query: 635 HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKD 694
           HSEKLAVAFGL+ T   + L+I ++ R C DCH+AIKLIA++  R++++RD +RFHHF +
Sbjct: 507 HSEKLAVAFGLLTTPAGSTLRITKNLRACEDCHSAIKLIALLYERKLIIRDRNRFHHFSE 566

Query: 695 GMCSCGDYW 703
           G CSC DYW
Sbjct: 567 GRCSCKDYW 575



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 110/228 (48%), Gaps = 3/228 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S +      +R ++ALEL+  +      +   +T  +++SAC  + ++     V  ++ S
Sbjct: 173 SMMSAYTKGRRSKDALELWREMR-AACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVES 231

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G E D+ +   ++ M+ +CG + ++ R+F  MP +++++ + +I G+ + G   +A  L
Sbjct: 232 NGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSL 291

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ-LHSCALKMGFGDNVFVSCALIDMYS 277
           F  +  E       TF  ++ +   L L+S GK+   S ++  G    V     ++D+  
Sbjct: 292 FSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLG 351

Query: 278 KCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           + G IE+A+ +  +M  E   V W  ++    ++   E A +   ++R
Sbjct: 352 RSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLR 399



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 120/310 (38%), Gaps = 100/310 (32%)

Query: 351 AKQAHAGLVRHGFGL-DIVANSALVDFYSKWGR--------------------------- 382
           A   HA  ++ GF   D+   +ALV+ Y+K GR                           
Sbjct: 58  AASLHARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPRRDVFLCNVMLAAYV 117

Query: 383 ----IEDARHVFDKMLCKNVISWNALIAGYGNHG-------------------------- 412
               + +AR VFD M  ++++SWN +I GY  +G                          
Sbjct: 118 TRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSA 177

Query: 413 -----RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR------ 461
                R ++A+EL+ +M    + P+  T ++VLSACS  G    G E+ Q +        
Sbjct: 178 YTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELD 237

Query: 462 ---------------DHKIKPRAMH---------YACMIELLGREGLLDEAFALIR---G 494
                          D +   R  H         ++ MI  L   G   +A +L      
Sbjct: 238 VKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLS 297

Query: 495 APFKTTKNMWAALLTACRVNGNLELGK--FAA-EKLYGMEPEKLSNYVVLLNIYNSSGKL 551
              +  +  +  +L +C   G +  GK  F++   ++G+ P K+ +Y  ++++   SG +
Sbjct: 298 EGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTP-KVQHYGCMVDLLGRSGHI 356

Query: 552 KEAAEVIRTL 561
           +EA ++IR +
Sbjct: 357 EEAKQLIRDM 366


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 204/555 (36%), Positives = 324/555 (58%), Gaps = 16/555 (2%)

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI--DSGDYLEAFLL 218
           F  D ++  R++  +   G +  AR++FDE P +N+   N ++  +   D GD  EA   
Sbjct: 104 FRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGD--EALAR 161

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVG-----KQLHSCALKMGFGDNVFVSCALI 273
             D+        S ++   ++A   +           +++H+ A++ G+  +  V+  LI
Sbjct: 162 LADMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLI 221

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM--RDSGVKMD 331
           D Y+K G +  A+ VF  M E+  V W+ +I  YA +    +A++L+ +M   D+ +  +
Sbjct: 222 DCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPN 281

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
             T   ++  C  + +L H K  HA ++R GF   +   +AL+  Y + G +E  RH+F 
Sbjct: 282 SITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFK 341

Query: 392 KM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
            +   ++V+SWN+LI+GYG HG G EAV++FE+M+  G  P+ +TF++VL ACS +GL  
Sbjct: 342 WIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVN 401

Query: 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
            G  +F+SM  ++ + PRA HYACM++LLGR G LDEA  LIR    + +  +W ALL A
Sbjct: 402 EGKMLFESMV-EYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLGA 460

Query: 511 CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT-LRRKGLRML 569
           CR++G++E  + A   L+ +EP    NYV+L +IY +  KL     V++  L    L  +
Sbjct: 461 CRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIY-ARAKLHNQVGVLKELLEEHALEKV 519

Query: 570 PACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQE 628
             CSWIEVKK+ H F S D  +   +++   +   + ++   GYVP+   +L D++ E++
Sbjct: 520 TGCSWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVLYDIEGEEK 579

Query: 629 QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
           +R+L  HSEKLAVAFGLINT     ++I ++ R+C DCH+  K I+  T REIVVRD +R
Sbjct: 580 ERILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVRDVNR 639

Query: 689 FHHFKDGMCSCGDYW 703
           FHHF+DG+CSCGDYW
Sbjct: 640 FHHFRDGVCSCGDYW 654



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 106/213 (49%), Gaps = 3/213 (1%)

Query: 107 NKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           N+R  +A+ELF +++  +      S T  ++++AC G+ ++   K + +Y+L  GF+  +
Sbjct: 258 NERPADAIELFKDMMASDADLVPNSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLV 317

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPE-RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
            + N ++ M++RCG +   R +F  +   R++VS N +I+G    G   EA  +F ++  
Sbjct: 318 SVLNALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIH 377

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                   TF +++ A +   L++ GK L    ++ G          ++D+  + G +++
Sbjct: 378 VGFSPSIITFISVLGACSHAGLVNEGKMLFESMVEYGVTPRAEHYACMVDLLGRAGQLDE 437

Query: 285 AQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEA 316
           A  +   M  E +   W  ++    +HG+ E A
Sbjct: 438 AMELIRSMHIEPSPQVWGALLGACRIHGHVEYA 470


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/595 (33%), Positives = 341/595 (57%), Gaps = 20/595 (3%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G +    T+   +  C  +  + + + +   +L++    D  +++ +L M+++C  M++A
Sbjct: 126 GVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEA 185

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE-EFSDCGSRTFATMIRASAG 243
           R++F+ M  RN+ S   +I+  + +G++ EA  LF  + + E  +  + TFAT++ A  G
Sbjct: 186 RKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEG 245

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L  +  G+++H      GF  NV V  AL+ MY KCGS  +A+ VFD M+ +  + W ++
Sbjct: 246 LGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSM 305

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           IA YA HG  +EAL+L+  M    V+    +FS  +  C  L +L+  ++ H  +V    
Sbjct: 306 IAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRVVEANL 362

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
               +  S L+  Y++ G ++DAR VF++M  ++  S NA+IA +  HGR ++A+ ++ +
Sbjct: 363 ASPQMETS-LLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRK 421

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           M   G+  + +TF++VL ACS + L     +  QS+  DH + P   HY CM+++LGR G
Sbjct: 422 MEQEGIPADGITFVSVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSG 481

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
            L +A  L+   P++     W  LL+ C+ +G+L+ G+ AA K++ + P +   YV L N
Sbjct: 482 RLGDAEELVETMPYQADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAETLPYVFLSN 541

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDR 603
           +Y ++ +  +A  V + +  +G+    A S+IE+  + H+F SG +   Q     R ++R
Sbjct: 542 MYAAAKRFDDARRVRKEMEERGVTRPVAVSYIEIDNELHMFTSGGRDEQQEGHDGRTMER 601

Query: 604 M------MLEISKH-GYVPEEKTLLPD-----VDEQEQRVLSYHSEKLAVAFGLI---NT 648
           +      +LE  K  GYVP+ + +  +      +E++QR L +HSE+LA+A+GLI   + 
Sbjct: 602 VRSLLVELLEPMKQAGYVPDTREVYLEQQGVTSEEEKQRSLCFHSERLAIAYGLIAAKDP 661

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            D  PL++V SHR+C  CH+AIKL++ +T + I VRD SRFHHF+ G CSCGD+W
Sbjct: 662 DDSRPLRVVNSHRVCSGCHSAIKLLSDITEKRIFVRDGSRFHHFEKGACSCGDHW 716



 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 203/389 (52%), Gaps = 7/389 (1%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   V   R  +ALEL+  +E E G         +L++AC  L+++ E +R+  +++ TG
Sbjct: 2   IAACVREGRPLQALELWGEME-ERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F  D+ +   +L M+ +CG + DA+R+F+ M  ++L + + IIA    +G    A +L+ 
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +  E  +    TFA  +   A +  ++ G+ +H   L      +  +  +L++MY KC 
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCD 180

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMII 339
            + +A+ VF+ M  +    +  +I+ Y   G   EAL+L+  M +   ++ + +TF+ I+
Sbjct: 181 EMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATIL 240

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
                L +LE  ++ H  L   GF  ++V  +ALV  Y K G   +AR VFD M  +NVI
Sbjct: 241 GAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVI 300

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           SW ++IA Y  HG  +EA+ LF++M    + P+ V+F + L+AC+  G  + G EI   +
Sbjct: 301 SWTSMIAAYAQHGNPQEALNLFKRM---DVEPSGVSFSSALNACALLGALDEGREIHHRV 357

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEA 488
              +   P+      ++ +  R G LD+A
Sbjct: 358 VEANLASPQM--ETSLLSMYARCGSLDDA 384



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 171/330 (51%), Gaps = 10/330 (3%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I   V    + EALELF  +      +  + T+  ++ A  GL ++ + ++V  ++ S
Sbjct: 202 AMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLAS 261

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            GF+ ++ ++N ++ M+ +CG  ++AR++FD M  RN++S   +IA     G+  EA  L
Sbjct: 262 RGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNL 321

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F  +  E S     +F++ + A A L  +  G+++H   ++     +  +  +L+ MY++
Sbjct: 322 FKRMDVEPSGV---SFSSALNACALLGALDEGREIHHRVVEANLA-SPQMETSLLSMYAR 377

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CGS++DA+ VF+ M  +     N +IA +  HG  ++AL +Y +M   G+  D  TF  +
Sbjct: 378 CGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSV 437

Query: 339 IRICTRLASLEHAKQAHAGLV-RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK- 396
           +  C+  + +   +     LV  HG    +     +VD   + GR+ DA  + + M  + 
Sbjct: 438 LVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQA 497

Query: 397 NVISWNALIAGYGNHG---RGEEAV-ELFE 422
           + ++W  L++G   HG   RGE A  ++FE
Sbjct: 498 DAVAWMTLLSGCKRHGDLDRGERAARKVFE 527



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 177/398 (44%), Gaps = 39/398 (9%)

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCG----SRTFATMIRASAGLELISVGKQLHSCA 257
           +IA  +  G  L+A    L+LW E  + G         +++ A   L+ +  G++LH   
Sbjct: 1   MIAACVREGRPLQA----LELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHL 56

Query: 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL 317
           +  GF  ++ +  AL+ MY+KCGS++DA+ VF+ M  K    W++IIA YA  G  E A+
Sbjct: 57  IITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAV 116

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
            LY  M   GV+ +  TF+  +  C  +A L   +  H  ++      D V   +L++ Y
Sbjct: 117 VLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMY 176

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM-LLNGMRPNHVTF 436
            K   + +AR VF+ M  +NV S+ A+I+ Y   G   EA+ELF +M  +  + PN  TF
Sbjct: 177 LKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTF 236

Query: 437 LAVLSACSRSGLSERGWEIFQSMSR------------------------------DHKIK 466
             +L A    G  E+G ++ + ++                               D    
Sbjct: 237 ATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTA 296

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
              + +  MI    + G   EA  L +    + +   +++ L AC + G L+ G+    +
Sbjct: 297 RNVISWTSMIAAYAQHGNPQEALNLFKRMDVEPSGVSFSSALNACALLGALDEGREIHHR 356

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           +             LL++Y   G L +A  V   ++ +
Sbjct: 357 VVEANLASPQMETSLLSMYARCGSLDDARRVFNRMKTR 394


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/524 (37%), Positives = 315/524 (60%), Gaps = 10/524 (1%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL--FLDLWEEFSDCGSRTFATMIRAS 241
           AR +F  +P  + ++ N II        +  +  L  F  +        + TF  +++A 
Sbjct: 41  ARYVFSRIPSPDTIAYNTIIRS---HSRFFPSHSLSYFFSMRSNGIPLDNFTFPFVLKAC 97

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN 301
           + L+   +   LHS  +K G G ++FV  ALI +Y  CGS+E A  VFDEMSE+ +V W+
Sbjct: 98  SRLQ---INLHLHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWS 154

Query: 302 TIIAGYALHGYSEEALDLYYEMR-DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           T+IA +  +GY+ EALDL+ +M+ +  V  D  T   +I   + L  LE  +   A + R
Sbjct: 155 TVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGR 214

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
            GFG+ +   +AL+D +S+ G I+++  VF+KM  +NV++W ALI G G HGR  EA+ +
Sbjct: 215 LGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAM 274

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
           F  M  +G++P++VTF  VL ACS  GL + GW+IF+S+ + + + P   HY CM+++LG
Sbjct: 275 FHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMVDILG 334

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540
           R GLL+EA+  +   P K    +W  LL AC  + NL L +    K+  +   +  + V+
Sbjct: 335 RAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLVL 394

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRK 600
           L N+Y ++G+  E A +   +R K +   P CS I V +  H F+SGD SH Q+++I + 
Sbjct: 395 LSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITKF 454

Query: 601 VDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQS 659
           +  ++ ++   GY+ + K +L D++E+E +  LSYHSEKLAVAF +++  D   ++I+++
Sbjct: 455 LSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMKN 514

Query: 660 HRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            RIC DCH+ +K I++   R+I++RD +RFHHF+ G+CSC DYW
Sbjct: 515 LRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLCSCHDYW 558



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 101/227 (44%), Gaps = 4/227 (1%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   ++ S    + I   + N    EAL+LFE ++ E        T  ++ISA   L  +
Sbjct: 143 DEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDL 202

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
              + V +++   GF   + +   ++ M  RCG + ++  +F++M  RN+++   +I G+
Sbjct: 203 ELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGL 262

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
              G  +EA  +F  + +        TF+ ++ A +   L+  G  +     K+   D +
Sbjct: 263 GIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYGMDPL 322

Query: 267 F--VSCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYALH 310
                C ++D+  + G + +A    + M  K  ++ W T++     H
Sbjct: 323 LDHYGC-MVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNH 368


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 208/584 (35%), Positives = 335/584 (57%), Gaps = 40/584 (6%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G    S T+  L+ +C   ++ +E +++  ++L  G + DLY+   ++ M+V+ G + DA
Sbjct: 86  GLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDA 145

Query: 185 RRLFDEMPERNLVS-------------------------------CNMIIAGMIDSGDYL 213
            ++FDE P R++VS                                N +I+G  ++G+Y 
Sbjct: 146 HKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYK 205

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA  LF D+ +        T  T++ A A    I +G+Q+HS     GFG N+ +  ALI
Sbjct: 206 EALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALI 265

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           D+YSKCG +E A G+F+ +  K  + WNT+I GY      +EAL L+ EM  SG   +  
Sbjct: 266 DLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDV 325

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN-----SALVDFYSKWGRIEDARH 388
           T   I+  C  L +++  +  H  + +    L  VAN     ++L+D Y+K G IE A  
Sbjct: 326 TMLSILPACAHLGAIDIGRWIHVYIDKR---LKGVANASSLRTSLIDMYAKCGDIEAAHQ 382

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           VF+ +L K++ SWNA+I G+  HGR + + ++F +M  NG+ P+ +TF+ +LSACS SG+
Sbjct: 383 VFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGM 442

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
            + G  IF+SM++D+K+ P+  HY CMI+LLG  GL  EA  +I     +    +W +LL
Sbjct: 443 LDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLL 502

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
            AC+++GN+ELG+  A+ L  +EPE   +YV+L NIY ++G+  E A     L  KG++ 
Sbjct: 503 KACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLNDKGMKK 562

Query: 569 LPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ- 627
           +P CS IE+    H F+ GD+ H + +EIY  ++ M + + + G+VP+   +L +++E+ 
Sbjct: 563 VPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEW 622

Query: 628 EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           ++  L +HSEKLA+AFGLI+T   T L IV++ R+C +CH A K
Sbjct: 623 KEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAYK 666



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 166/380 (43%), Gaps = 81/380 (21%)

Query: 251 KQLHSCALKMGFGDNVFVSCALID---MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           + +H+  +K G  +  +    LI+   +      +  A  VF+ + E   + WNT+  G+
Sbjct: 7   RMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRGH 66

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           AL      AL LY  M   G+  + +TF  +++ C +  + +  +Q H  +++ G  LD+
Sbjct: 67  ALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDL 126

Query: 368 VANSALVDFYSKWGRIEDARHVFD---------------------------KML----CK 396
             +++L+  Y + GR+EDA  VFD                           KM      K
Sbjct: 127 YVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVK 186

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
           +V+SWNA+I+GY   G  +EA+ELF+ M+   +RP+  T + V+SAC++SG  E G ++ 
Sbjct: 187 DVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQV- 245

Query: 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGN 516
            S   DH           +I+L  + G L+ A  L  G P+K              ++ N
Sbjct: 246 HSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDV------------ISWN 293

Query: 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG--------LRM 568
             +G +    LY                       KEA  + + + R G        L +
Sbjct: 294 TLIGGYTHMNLY-----------------------KEALLLFQEMLRSGETPNDVTMLSI 330

Query: 569 LPACSW---IEVKKQPHVFL 585
           LPAC+    I++ +  HV++
Sbjct: 331 LPACAHLGAIDIGRWIHVYI 350


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 201/607 (33%), Positives = 357/607 (58%), Gaps = 4/607 (0%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I+  V N  Y+EALE F  +    G      +  ++I+A   L ++     + +Y++ 
Sbjct: 356 SLIKGYVQNLMYKEALEFFSDM-IAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIK 414

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G++ +L + N ++ M+ +C +     R F  M +++L+S   +IAG   +  ++EA  L
Sbjct: 415 HGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALEL 474

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           F D+ ++  +       +++RAS+ L+ + + K++H   L+ G  D V +   L+D+Y K
Sbjct: 475 FRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTV-IQNELVDVYGK 533

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           C ++  A  VF+ +  K  V W ++I+  AL+G   EA++L+  M ++G+  D      I
Sbjct: 534 CRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCI 593

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +     L++L   ++ H  L+R GF L+     A+VD Y+  G ++ A+ VFD++  K +
Sbjct: 594 LSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGL 653

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           + + ++I  YG HG G+ AVELF++M    + P+H++FLA+L ACS +GL + G    + 
Sbjct: 654 LQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKI 713

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M  +++++P   HY C++++LGR   + EAF  ++    + T  +W ALL ACR +   E
Sbjct: 714 MEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKE 773

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           +G+ AA++L  +EP+   N V++ N++   G+  +  +V   ++  G+   P CSWIE+ 
Sbjct: 774 IGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMD 833

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH-GYVPEEKTLLPDVDEQEQ-RVLSYHS 636
            + H F + D+SH ++KEIY K+  +  ++ +  GYV + K +L +VDE E+ ++L  HS
Sbjct: 834 GKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHS 893

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           E++A+A+GL+ T D   L+I ++ R+C DCH   KL++ +  R+IV+RDA+RFHHF+ G+
Sbjct: 894 ERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGL 953

Query: 697 CSCGDYW 703
           CSCGD W
Sbjct: 954 CSCGDSW 960



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 170/314 (54%), Gaps = 5/314 (1%)

Query: 136 LISACIGLRSIREVKRVFSYMLST--GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193
           ++  C   R++ + +++ S +  T   FE D ++  +++ M+ +CG + DA ++FDEMP+
Sbjct: 86  VLELCGKRRAVSQGRQLHSRIFKTFPSFELD-FLAGKLVFMYGKCGSLDDAEKVFDEMPD 144

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL 253
           R   + N +I   + +G+   A  L+ ++  E    G  +F  +++A A L  I  G +L
Sbjct: 145 RTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSEL 204

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYALHGY 312
           HS  +K+G+    F+  AL+ MY+K   +  A+ +FD   EK   V WN+I++ Y+  G 
Sbjct: 205 HSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGK 264

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG-FGLDIVANS 371
           S E L+L+ EM  +G   + +T    +  C   +  +  K+ HA +++      ++   +
Sbjct: 265 SLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCN 324

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           AL+  Y++ G++  A  +  +M   +V++WN+LI GY  +   +EA+E F  M+  G + 
Sbjct: 325 ALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKS 384

Query: 432 NHVTFLAVLSACSR 445
           + V+  ++++A  R
Sbjct: 385 DEVSMTSIIAASGR 398



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 120/436 (27%), Positives = 203/436 (46%), Gaps = 38/436 (8%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I   V N     AL L+  +  EG   +G S++ AL+ AC  LR IR    + S ++ 
Sbjct: 152 TMIGAYVSNGEPASALALYWNMRVEG-VPLGLSSFPALLKACAKLRDIRSGSELHSLLVK 210

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER-NLVSCNMIIAGMIDSGDYLEAFL 217
            G+    ++ N ++ M+ +   +  ARRLFD   E+ + V  N I++    SG  LE   
Sbjct: 211 LGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLE 270

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG-FGDNVFVSCALIDMY 276
           LF ++        S T  + + A  G     +GK++H+  LK       ++V  ALI MY
Sbjct: 271 LFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMY 330

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
           ++CG +  A+ +  +M+    V WN++I GY  +   +EAL+ + +M  +G K D  + +
Sbjct: 331 TRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMT 390

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
            II    RL++L    + HA +++HG+  ++   + L+D YSK          F +M  K
Sbjct: 391 SIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDK 450

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS------------ 444
           ++ISW  +IAGY  +    EA+ELF  +    M  + +   ++L A S            
Sbjct: 451 DLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIH 510

Query: 445 ----RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTT 500
               R GL +    + Q+   D   K R M YA  +            F  I+G    + 
Sbjct: 511 CHILRKGLLD---TVIQNELVDVYGKCRNMGYATRV------------FESIKGKDVVS- 554

Query: 501 KNMWAALLTACRVNGN 516
              W +++++  +NGN
Sbjct: 555 ---WTSMISSSALNGN 567



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/263 (30%), Positives = 135/263 (51%), Gaps = 2/263 (0%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNV-FVSCALIDMYSKCGSIEDAQGVFDE 291
            FA ++        +S G+QLHS   K      + F++  L+ MY KCGS++DA+ VFDE
Sbjct: 82  AFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDE 141

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M ++T   WNT+I  Y  +G    AL LY+ MR  GV +   +F  +++ C +L  +   
Sbjct: 142 MPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSG 201

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGN 410
            + H+ LV+ G+       +ALV  Y+K   +  AR +FD    K + + WN++++ Y  
Sbjct: 202 SELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYST 261

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
            G+  E +ELF +M + G  PN  T ++ L+AC     ++ G EI  S+ +         
Sbjct: 262 SGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELY 321

Query: 471 HYACMIELLGREGLLDEAFALIR 493
               +I +  R G + +A  ++R
Sbjct: 322 VCNALIAMYTRCGKMPQAERILR 344


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/507 (38%), Positives = 295/507 (58%), Gaps = 36/507 (7%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T   ++++ A L  + +G+ +H   L++G   + +V  +LIDMY KCG I DA+ +FD+M
Sbjct: 109 TLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKM 168

Query: 293 -------------------------------SEKTTVGWNTIIAGYALHGYSEEALDLYY 321
                                            +  V W  +I+GY  +G++E+AL L+ 
Sbjct: 169 IVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFD 228

Query: 322 EMRDSGVKM--DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379
           EM   G +M  +  T   ++  C + A+LE  ++ H      G  L+    +AL   Y+K
Sbjct: 229 EMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAK 288

Query: 380 WGRIEDARHVFDKML--CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
              + +AR  FD +    KN+I+WN +I  Y +HG G EAV +FE ML  G++P+ VTF+
Sbjct: 289 CYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFM 348

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
            +LS CS SGL + G   F  M   H ++PR  HYAC+++LLGR G L EA  LI   P 
Sbjct: 349 GLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPM 408

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
           +   ++W ALL ACR + NLE+ + AA +L+ +EP+   NYV+L N+Y  +G  +E  ++
Sbjct: 409 QAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKL 468

Query: 558 IRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEE 617
              L+ +G++  P CSWIE+  + H+F+  D+SH Q KEIY+ ++ +  +I   GY+P+ 
Sbjct: 469 RALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDT 528

Query: 618 KTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMV 676
             +L D+ E+E+   L+ HSEKLA+AFGL+NT     L++ ++ RIC DCH A K I+ +
Sbjct: 529 SFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKI 588

Query: 677 TGREIVVRDASRFHHFKDGMCSCGDYW 703
             REI+VRD +RFH FKDG CSCGDYW
Sbjct: 589 YEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 154/338 (45%), Gaps = 50/338 (14%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T   ++ +C  L  +   + V    L  G E D Y+   ++ M+V+CG++ DAR+LFD+M
Sbjct: 109 TLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKM 168

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLF---------------------------LDLWE 224
             R++ S N +IAG +  G+   A  LF                           L L++
Sbjct: 169 IVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFD 228

Query: 225 EFSDCGSR------TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           E    GS       T  +++ A A    +  G+++H  A  +G   N  V  AL  MY+K
Sbjct: 229 EMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAK 288

Query: 279 CGSIEDAQGVFDEMSE--KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
           C S+ +A+  FD +++  K  + WNT+I  YA HG   EA+ ++  M  +GV+ D  TF 
Sbjct: 289 CYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFM 348

Query: 337 MIIRICTRLASLEHAKQAHAGL-------VRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
            ++  C+      H+    AGL         H     +   + +VD   + GR+ +A+ +
Sbjct: 349 GLLSGCS------HSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKEL 402

Query: 390 FDKMLCKNVIS-WNALIAGYGNHGRGEEAVELFEQMLL 426
             +M  +   S W AL+A   +H R  E  EL  + L 
Sbjct: 403 ISQMPMQAGPSVWGALLAACRSH-RNLEIAELAARRLF 439



 Score = 92.0 bits (227), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/172 (33%), Positives = 86/172 (50%), Gaps = 33/172 (19%)

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
           L+ Y  M   G+  D+FT   +++ C  L+ +   +  H   +R G   D    ++L+D 
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIA------------------------------ 406
           Y K G I DAR +FDKM+ +++ SWNALIA                              
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211

Query: 407 -GYGNHGRGEEAVELFEQMLLNG--MRPNHVTFLAVLSACSRSGLSERGWEI 455
            GY  +G  E+A+ LF++ML +G  M+PN VT ++VL AC++S   ERG  I
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRI 263


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/612 (35%), Positives = 338/612 (55%), Gaps = 49/612 (8%)

Query: 134 DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID-ARRLFDEMP 192
           D L+S+C   +S R++K+V + +++TG        N++L         I  A  +FD  P
Sbjct: 5   DFLLSSC---KSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFP 61

Query: 193 ERNLVSCNMIIAGM-IDSGDYLEAFLLFLDLW-EEFSDCGSRTFATMIRASAGLELISVG 250
           + +L   N II  +   +    ++F  F  L  EE       +FA   +       +  G
Sbjct: 62  QPDLFLYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEG 121

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMY-------------------------------SKC 279
           +Q+   A+K+G  +N+FV+ ALI MY                               ++ 
Sbjct: 122 EQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARL 181

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           G +++A+ +FDEM EK  V W T+I+G    GY  EALD+++ M   G+  + +T +  +
Sbjct: 182 GKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMSPNEYTLASSL 241

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK--MLCKN 397
             C  L +L+  +  H  + ++   ++    + L+D Y+K G +E A  +F+    L + 
Sbjct: 242 AACANLVALDQGRWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRK 301

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           V  WNA+I G+  HG+ +EA+E+FEQM +  + PN VTF+A+L+ACS     E G   F+
Sbjct: 302 VWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFE 361

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
           SM+  +++KP   HY C+++LLGR G L EA  +I          +W ALL+AC+++ + 
Sbjct: 362 SMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDA 421

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK----GLRMLPACS 573
           E+G+   + +  ++P  L  +V+L NIY+ +G   EA    RTLR K    G +  P CS
Sbjct: 422 EMGERVGKIVKELDPNHLGCHVLLANIYSLTGNWNEA----RTLREKIAESGKKKTPGCS 477

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR--V 631
            IE+    H FL GD+SH QTK++Y  +D M+ ++   GY+PE   +L D+D+ E R   
Sbjct: 478 SIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETA 537

Query: 632 LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHH 691
           L  HSEKLA+AFGL+NT+  TP++IV++ R+C DCH AIK I+ V  REI+VRD  R+HH
Sbjct: 538 LLKHSEKLAIAFGLMNTTPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIRYHH 597

Query: 692 FKDGMCSCGDYW 703
           FKDG CSC DYW
Sbjct: 598 FKDGTCSCNDYW 609



 Score = 42.0 bits (97), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 88/209 (42%), Gaps = 5/209 (2%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + EAL++F  +    G      T  + ++AC  L ++ + + +  Y+     + +  +  
Sbjct: 215 FMEALDIFHNM-LAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLA 273

Query: 170 RVLLMHVRCGMMIDARRLFDEMP--ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            ++ M+ +CG +  A +LF+  P  +R +   N +I G    G   EA  +F  +  E  
Sbjct: 274 GLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKV 333

Query: 228 DCGSRTFATMIRASAGLELISVGK-QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                TF  ++ A +    +  G+    S A        +     L+D+  + G +++A+
Sbjct: 334 SPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAE 393

Query: 287 GVFDEMSEKTTVG-WNTIIAGYALHGYSE 314
            +   M     V  W  +++   +H  +E
Sbjct: 394 EIISSMHLTPDVAIWGALLSACKIHKDAE 422


>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
          Length = 584

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/463 (41%), Positives = 295/463 (63%), Gaps = 3/463 (0%)

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L  +  G  +H+ ++ +GFG + FV  AL+ +YSKCG +  A+ +FD + +++ V WN +
Sbjct: 122 LSALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAM 181

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I+GY  +G +E A+++Y EM+ + V  D  TF   +  C +  +L+  ++    +V    
Sbjct: 182 ISGYEQNGLAERAIEVYREMQVAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQM 241

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
            + +   SALV+ Y++ G +  AR  FD++  +NV++W ++IAGYG HG G EA++LF  
Sbjct: 242 DVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHL 301

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           M L G  PN VTF+AVL+AC+ +GL   G   F SM R + + PRA HY  M+++ GR G
Sbjct: 302 MRLEGPTPNDVTFVAVLAACAHAGLVNEGRSAFDSMKRVYGLVPRAEHYCSMVDMYGRAG 361

Query: 484 LLDEAFALIRGA-PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
           LLD+A   IR + P +    +W A+L AC+++ N  LG   AE+L  +EPE  S+ V+L 
Sbjct: 362 LLDDAMQFIRDSIPGEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLS 421

Query: 543 NIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVD 602
           NIY  SGK+    +V   + ++ L+     S IE+    H+F  G++SH QT+EIY+ ++
Sbjct: 422 NIYALSGKMNHVEKVRNVMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYQYLE 481

Query: 603 RMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTS-DWTPLQIVQSH 660
            ++  IS  GYVPE  ++L +++E+E+ V L YHSEKLAVA+GL+ +S   TP++++++ 
Sbjct: 482 ELIHRISDAGYVPETDSVLHELEEEEREVALRYHSEKLAVAYGLMMSSGSTTPIRVIKNL 541

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           RIC DCH AIK ++ V  REI+VRD  RFHHFKDG CSC +YW
Sbjct: 542 RICGDCHLAIKFMSSVESREIIVRDKHRFHHFKDGKCSCLEYW 584



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 155/317 (48%), Gaps = 26/317 (8%)

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           L ++R    V ++ +  GF  D +++  +++++ +CG +  AR+LFD + +R++V+ N +
Sbjct: 122 LSALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAM 181

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           I+G   +G    A  ++ ++        S TF T + A A    + +G+++    +    
Sbjct: 182 ISGYEQNGLAERAIEVYREMQVAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQM 241

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             +VF+  AL++MY++CG +  A+  FD + E+  V W ++IAGY +HG+  EA+ L++ 
Sbjct: 242 DVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHL 301

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG----------FGLDIVANS- 371
           MR  G   +  TF  ++  C           AHAGLV  G          +GL   A   
Sbjct: 302 MRLEGPTPNDVTFVAVLAAC-----------AHAGLVNEGRSAFDSMKRVYGLVPRAEHY 350

Query: 372 -ALVDFYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEAVELFEQML-LN 427
            ++VD Y + G ++DA       +        W A++     H      VE+ E+++ L 
Sbjct: 351 CSMVDMYGRAGLLDDAMQFIRDSIPGEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALE 410

Query: 428 GMRPNHVTFLAVLSACS 444
              P+H   L+ + A S
Sbjct: 411 PENPSHRVLLSNIYALS 427



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 136/289 (47%), Gaps = 39/289 (13%)

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           A  G   EA+  Y  +  + +    F F+   + C  L++L      HA  V  GFG D 
Sbjct: 85  AHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADLSALRTGMAVHAHSVLLGFGSDR 144

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              +ALV  YSK G++  AR +FD +  ++V++WNA+I+GY  +G  E A+E++ +M + 
Sbjct: 145 FVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYREMQVA 204

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
            + P+  TF+  LSAC+++G  + G E+ + +  D ++       + ++ +  R GL+ +
Sbjct: 205 QVVPDSATFVTTLSACAQAGALDLGREVERRIVSD-QMDVSVFLGSALVNMYARCGLVSK 263

Query: 488 A----------------------------------FALIRGAPFKTTKNMWAALLTACRV 513
           A                                  F L+R          + A+L AC  
Sbjct: 264 ARDWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHLMRLEGPTPNDVTFVAVLAACAH 323

Query: 514 NGNLELGKFA---AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
            G +  G+ A    +++YG+ P +  +Y  ++++Y  +G L +A + IR
Sbjct: 324 AGLVNEGRSAFDSMKRVYGLVP-RAEHYCSMVDMYGRAGLLDDAMQFIR 371


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/583 (34%), Positives = 349/583 (59%), Gaps = 15/583 (2%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY+ LI +C    S+ +   +  +++  G + D ++  +++ M+     + +AR++FD+ 
Sbjct: 80  TYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLINMYSELDSIDNARKVFDKT 139

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRA----SAG 243
            +R +   N +   +  +G   E     LDL+   +  G      T+  +++A     A 
Sbjct: 140 RKRTIYVWNALFRALTLAGYGREV----LDLYRRMNRIGVPSDRFTYTYVLKACVASEAF 195

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           + L+  G+++H   L+ GF  +V +   L+DMY++ G + +A  VFD+M  K  V W+ +
Sbjct: 196 VSLLLNGREIHGHILRHGFEGHVHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAM 255

Query: 304 IAGYALHGYSEEALDLYYEM--RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           IA Y+ +G   EAL+L+ +M   +  +  +  T   +++ C  LA+LE  K  H  ++R 
Sbjct: 256 IACYSKNGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRR 315

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
           G    +   SALV  Y++ G +E    VF++M  ++V+SWN+LI+ YG HG G +A+++F
Sbjct: 316 GLDSILPVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIF 375

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481
           ++M+  G+ P+ ++F++VL ACS +GL E G  +F+SM R HKI P   HYACM++LLGR
Sbjct: 376 KEMIDQGLSPSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGR 435

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541
              LDEA  +I     +    +W +LL +CR++ N+EL + A  +L+ +EP    NYV+L
Sbjct: 436 ANRLDEAAKIIDDMRIEPGPKVWGSLLGSCRIHCNVELAERATSRLFELEPTNAGNYVLL 495

Query: 542 LNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV 601
            +IY  +    E   V   L  +GL+ +P  S IE++++ + F+S D+ + Q ++++  +
Sbjct: 496 ADIYAEAKMWNEVKRVKMLLEARGLQKVPGRSCIEIRRKIYSFMSVDEFNPQIEQLHALL 555

Query: 602 DRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSH 660
            ++ +E+ + GYVP+ K +L D+D E+++R++  HSEKLA+AFGLIN+     ++I ++ 
Sbjct: 556 LKLSMEMKEKGYVPDTKVVLYDLDPEEKERIVLGHSEKLALAFGLINSKKGETIRITKNL 615

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           R+C DCH+  K I+    REI+VRD +RFH F+DG+CSCGDYW
Sbjct: 616 RLCEDCHSVTKFISKFANREILVRDVNRFHLFQDGVCSCGDYW 658



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 101/210 (48%), Gaps = 9/210 (4%)

Query: 107 NKRYREALELFEILEFEG-GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           N +  EALELF  +  E       S T  +++ AC  L ++ + K +  Y+L  G +  L
Sbjct: 262 NGKPLEALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSIL 321

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            + + ++ ++ RCG +    R+F+ M +R++VS N +I+     G   +A  +F ++ ++
Sbjct: 322 PVVSALVTVYARCGNLELGHRVFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQ 381

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS----CALIDMYSKCGS 281
                  +F +++ A +   L+  GK L    ++   G  +F S      ++D+  +   
Sbjct: 382 GLSPSPISFVSVLGACSHAGLVEEGKVLFESMVR---GHKIFPSVEHYACMVDLLGRANR 438

Query: 282 IEDAQGVFDEMS-EKTTVGWNTIIAGYALH 310
           +++A  + D+M  E     W +++    +H
Sbjct: 439 LDEAAKIIDDMRIEPGPKVWGSLLGSCRIH 468


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  374 bits (960), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/574 (35%), Positives = 326/574 (56%), Gaps = 2/574 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+ +L+  C  L   +  K +   ++      DLY+   +L M+  CG +  AR LF+ M
Sbjct: 81  TFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERM 140

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
             RN V    +I+G + +    EA LL+  + E+       T AT++ A A L+ + VG 
Sbjct: 141 GHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGM 200

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           +LHS   +M       +  AL++MY+KCG ++ A+ VFD++S+K    W+ +I GY  + 
Sbjct: 201 KLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNN 260

Query: 312 YSEEALDLYYEMRD-SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
            S EAL L+ E+   S ++ +  T   +I  C +L  LE  +  H  + R   G  +  N
Sbjct: 261 RSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLN 320

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           ++L+D +SK G I+ A+ +FD M  K++ISWN+++ G+  HG G EA+  F  M    ++
Sbjct: 321 NSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQ 380

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           P+ +TF+ VL+ACS +GL + G ++F  +   + ++ ++ HY CM++LL R GLL EA  
Sbjct: 381 PDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEARE 440

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
            IR  P +    +W ++L ACRV  NLELG+ AA  L  +EP     Y++L NIY     
Sbjct: 441 FIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDGVYILLSNIYAKRKM 500

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
             E  +V   +  KG++  P CS + +    H FL+GD SH +  EI   + ++  ++  
Sbjct: 501 WNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKL 560

Query: 611 HGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
            GYV +   +L ++D+ +++  +S HSEKLA+ +GL+ +     + I+++ R+C DCH  
Sbjct: 561 AGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTL 620

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           IKL++ +  R+I +RD +RFHHFKDG CSC DYW
Sbjct: 621 IKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 167/343 (48%), Gaps = 29/343 (8%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   + N    EAL L++ +E E GF     T   L+SAC  L+ +    ++ S++  
Sbjct: 150 SMISGYMKNHCPNEALLLYKKME-EDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIRE 208

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
              +    + + ++ M+ +CG +  AR++FD++ ++++ + + +I G + +    EA  L
Sbjct: 209 MDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQL 268

Query: 219 FLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           F ++    +      T   +I A A L  +  G+ +H    +   G +V ++ +LIDM+S
Sbjct: 269 FREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFS 328

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           KCG I+ A+ +FD MS K  + WN+++ G+ALHG   EAL  +  M+ + ++ D  TF  
Sbjct: 329 KCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIG 388

Query: 338 IIRICTRLASLEHAKQAHAGLVRHG----------FGLDIVAN--SALVDFYSKWGRIED 385
           ++  C+           HAGLV+ G          +G+ + +     +VD   + G + +
Sbjct: 389 VLTACS-----------HAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAE 437

Query: 386 ARHVFDKM-LCKNVISWNALIAG---YGNHGRGEEAVELFEQM 424
           AR     M L  +   W +++     Y N   GEEA     ++
Sbjct: 438 AREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKL 480



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 83/161 (51%), Gaps = 1/161 (0%)

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM-DHFTFSMIIRICT 343
           A  VF    E   + WN+++  +        AL  Y EM +    + D FTF  +++ C 
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            L   +  K  H  +V++    D+   + L++ Y+  G ++ AR +F++M  +N + W +
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           +I+GY  +    EA+ L+++M  +G  P+ VT   ++SAC+
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACA 191


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/476 (39%), Positives = 292/476 (61%), Gaps = 5/476 (1%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           TF  ++++ A   L+ +G+ +H+  L+ G   + FV  +LI MYS  G ++ A+ +F  M
Sbjct: 66  TFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVM 125

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV---KMDHFTFSMIIRICTRLASLE 349
            E+  + W+ +I GY   G  +EAL L+ EM+  GV   + + FT S ++  C RL +LE
Sbjct: 126 PERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALE 185

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGY 408
           H K AHA + + G  +D+V  +AL+D Y+K G +E A  VF  +   K+V++W+A+I+G 
Sbjct: 186 HGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGL 245

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
             HG  EE V LF +M+  G+RPN VTFLAV  AC   GL   G +  + M+ D+ I P 
Sbjct: 246 AMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPT 305

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
             HY CM++L GR G + EA+ +++  P +    +W ALL+  R++G++E  + A +KL 
Sbjct: 306 IQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIETCELALKKLI 365

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
            +EP     YV+L N+Y   G+ ++   V   +   G++ +P CS IEV    H F  GD
Sbjct: 366 ELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPGCSLIEVGGVLHEFFVGD 425

Query: 589 QSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLIN 647
            SH +T++I+  ++ ++  +   GYV   K +L D+DE+ ++  LS HSEKLA+A+G + 
Sbjct: 426 DSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKELALSLHSEKLALAYGFLK 485

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           TS  TP++IV++ RIC DCH AIK+I+ V  REI+VRD +RFHHF  G+CSC DYW
Sbjct: 486 TSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFHHFTQGLCSCRDYW 541



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 138/286 (48%), Gaps = 40/286 (13%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           + V + +L  G   D +++  ++ M+   G++  AR LF  MPERN++S + +I G +  
Sbjct: 84  RSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRC 143

Query: 210 GDYLEAFLLFLDLW---------EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM 260
           G Y EA  LF ++           EF      T + ++ A   L  +  GK  H+   K 
Sbjct: 144 GQYKEALALFREMQMLGVNDVRPNEF------TMSGVLAACGRLGALEHGKWAHAYIDKC 197

Query: 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM-SEKTTVGWNTIIAGYALHGYSEEALDL 319
           G   +V +  ALIDMY+KCGS+E A  VF  +   K  + W+ +I+G A+HG +EE + L
Sbjct: 198 GMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGL 257

Query: 320 YYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG------------FGLDI 367
           + +M + GV+ +  TF  +   C            H GLV  G                I
Sbjct: 258 FSKMINQGVRPNAVTFLAVFCACV-----------HGGLVSEGKDYLRRMTEDYSIIPTI 306

Query: 368 VANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHG 412
                +VD Y + GRI++A +V   M +  +V+ W AL++G   HG
Sbjct: 307 QHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHG 352



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 140/311 (45%), Gaps = 54/311 (17%)

Query: 300 WNTIIAGYA-----LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
           WNT+I  +        G +   + ++  MR  GV+ D  TF  +++     + L   +  
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414
           HA ++R G  +D    ++L+  YS  G ++ AR++F  M  +NVISW+ +I GY   G+ 
Sbjct: 87  HAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQY 146

Query: 415 EEAVELFEQMLL---NGMRPNHVTFLAVLSACSRSGLSERG-WE---------------- 454
           +EA+ LF +M +   N +RPN  T   VL+AC R G  E G W                 
Sbjct: 147 KEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLG 206

Query: 455 ------------------IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA---FALIR 493
                             +F ++  +  +    M ++ MI  L   GL +E    F+ + 
Sbjct: 207 TALIDMYAKCGSVEKATWVFSNLGPNKDV----MAWSAMISGLAMHGLAEECVGLFSKMI 262

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGK 550
               +     + A+  AC   G +  GK    ++   Y + P  + +Y  ++++Y  +G+
Sbjct: 263 NQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIP-TIQHYGCMVDLYGRAGR 321

Query: 551 LKEAAEVIRTL 561
           +KEA  V++++
Sbjct: 322 IKEAWNVVKSM 332



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 120/290 (41%), Gaps = 41/290 (14%)

Query: 109 RYREALELFEILEFEGGFDVGSS--TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           +Y+EAL LF  ++  G  DV  +  T   +++AC  L ++   K   +Y+   G   D+ 
Sbjct: 145 QYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVV 204

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEM-PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
           +   ++ M+ +CG +  A  +F  + P +++++ + +I+G+   G   E   LF  +  +
Sbjct: 205 LGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQ 264

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQ-LHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                + TF  +  A     L+S GK  L            +     ++D+Y + G I++
Sbjct: 265 GVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKE 324

Query: 285 AQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
           A  V   M  E   + W  +++G  +HG  E                   T  + ++   
Sbjct: 325 AWNVVKSMPMEPDVLVWGALLSGSRMHGDIE-------------------TCELALK--- 362

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           +L  LE                   A   L + Y+K GR ED RHV D M
Sbjct: 363 KLIELEPTNSG--------------AYVLLSNVYAKRGRWEDVRHVRDLM 398


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/541 (34%), Positives = 323/541 (59%), Gaps = 5/541 (0%)

Query: 83  SSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIG 142
           +SLP+  ++  +A I         + +  EAL +F +L+ + G  +   +      AC  
Sbjct: 334 NSLPNHNLQSYNAIIVGYAR----SDKGIEALGMFRLLQ-KSGLGLDEVSLSGAFRACAV 388

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           ++   E  +V    + +  + ++ + N +L M+ +CG +++A  +F+EM  R+ VS N I
Sbjct: 389 IKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAI 448

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           IA    +G+  +   LF+ + +   +    T+ ++++A AG + ++ G ++H+  +K   
Sbjct: 449 IAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRL 508

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
           G + FV  ALIDMYSKCG +E A+ + D ++E+T V WN II+G++L   SEEA   + +
Sbjct: 509 GLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSK 568

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M + GV  D+FT++ I+  C  L ++E  KQ HA +++     D   +S LVD YSK G 
Sbjct: 569 MLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGN 628

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           ++D + +F+K   ++ ++WNA++ GY  HG GEEA+++FE M L  ++PNH TFLAVL A
Sbjct: 629 MQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRA 688

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
           C   GL E+G   F SM  ++ + P+  HY+C+++++GR G + +A  LI G PF+    
Sbjct: 689 CGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAV 748

Query: 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           +W  LL+ C+++GN+E+ + AA  +  +EPE  + YV+L NIY ++G   E  ++ + +R
Sbjct: 749 IWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMR 808

Query: 563 RKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLP 622
             GL+  P CSWIE+K + H FL GD++H ++KEIY  +D +  E+   GY+P+   +L 
Sbjct: 809 FNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMKWVGYMPDTDFILN 868

Query: 623 D 623
           D
Sbjct: 869 D 869



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 122/443 (27%), Positives = 214/443 (48%), Gaps = 35/443 (7%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC------------- 178
           T+  +   C   +++   K+  + M+ T F+P +++ N ++ M+++C             
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 179 ------------------GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
                             G +  A++LFD MPER++VS N +I+G + +GD+ +   +FL
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +    +     TFA ++++ + LE    G Q+H  A+KMGF  +V    AL+DMY+KC 
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            ++ +   F  M EK  V W+ IIAG   +      L+L+ EM+ +GV +   TF+ + R
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFR 283

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C  L++L    Q H   ++  FG D+V  +A +D Y K   + DA+ +F+ +   N+ S
Sbjct: 284 SCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQS 343

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           +NA+I GY    +G EA+ +F  +  +G+  + V+      AC+       G ++   +S
Sbjct: 344 YNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAVIKGDLEGLQV-HGLS 402

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE-- 518
                +        ++++ G+ G L EA  L+           W A++ A   NGN E  
Sbjct: 403 MKSLCQSNICVANAILDMYGKCGALVEA-CLVFEEMVSRDAVSWNAIIAAHEQNGNEEKT 461

Query: 519 LGKFAAEKLYGMEPEKLSNYVVL 541
           L  F      GMEP++ +   VL
Sbjct: 462 LSLFVWMLQSGMEPDEFTYGSVL 484



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/452 (27%), Positives = 223/452 (49%), Gaps = 19/452 (4%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGG-FDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           S I   + N  +R+ +++F  +   G  FD   +T+  ++ +C  L       ++    +
Sbjct: 144 SLISGYLHNGDHRKVIDVFLQMGRMGTVFD--RTTFAVVLKSCSSLEDHGGGIQIHGLAV 201

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
             GF+ D+   + +L M+ +C  +  + + F  MPE+N VS + IIAG + + D      
Sbjct: 202 KMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLE 261

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           LF ++ +        TFA++ R+ AGL  + +G QLH  ALK  FG +V +  A +DMY 
Sbjct: 262 LFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYM 321

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           KC ++ DAQ +F+ +       +N II GYA      EAL ++  ++ SG+ +D  + S 
Sbjct: 322 KCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSG 381

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
             R C  +       Q H   ++     +I   +A++D Y K G + +A  VF++M+ ++
Sbjct: 382 AFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRD 441

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
            +SWNA+IA +  +G  E+ + LF  ML +GM P+  T+ +VL AC+       GW+   
Sbjct: 442 AVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACA-------GWQALN 494

Query: 458 SMSRDHK--IKPR----AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
                H   IK R    +     +I++  + G++++A  L      +T  + W A+++  
Sbjct: 495 CGMEIHNRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVS-WNAIISGF 553

Query: 512 RVNGNLELGKFAAEKLY--GMEPEKLSNYVVL 541
            +    E  +    K+   G++P+  +   +L
Sbjct: 554 SLQKQSEEAQKTFSKMLEMGVDPDNFTYATIL 585



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 121/249 (48%), Gaps = 33/249 (13%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           +TF+ + +  +  + +  GKQ H+  +   F   VFV+  LI MY KC  +E A  VFD 
Sbjct: 43  KTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDG 102

Query: 292 MSEKTTVGWNTIIAGYA------------------------------LH-GYSEEALDLY 320
           M ++ TV WN ++ GYA                              LH G   + +D++
Sbjct: 103 MPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVF 162

Query: 321 YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380
            +M   G   D  TF+++++ C+ L       Q H   V+ GF  D+V  SAL+D Y+K 
Sbjct: 163 LQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKC 222

Query: 381 GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
            +++ +   F  M  KN +SW+A+IAG   +      +ELF++M   G+  +  TF +V 
Sbjct: 223 KKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVF 282

Query: 441 SACSRSGLS 449
            +C  +GLS
Sbjct: 283 RSC--AGLS 289


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  374 bits (959), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/474 (39%), Positives = 293/474 (61%), Gaps = 7/474 (1%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T++ ++ A   L +IS   ++H+  +K  +  +  V  AL+D Y K G +E+A  VF  +
Sbjct: 3   TYSVILTA---LPVISPS-EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGI 58

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL-ASLEHA 351
            +K  V W+ ++AGYA  G +E A+ ++ E+   G+K + FTFS I+ +C    AS+   
Sbjct: 59  DDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQG 118

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           KQ H   ++      +  +SAL+  Y+K G IE A  VF +   K+++SWN++I+GY  H
Sbjct: 119 KQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQH 178

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G+  +A+++F++M    ++ + VTF+ V +AC+ +GL E G + F  M RD KI P   H
Sbjct: 179 GQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEH 238

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
            +CM++L  R G L++A  +I   P      +W  +L ACRV+   ELG+ AAEK+  M+
Sbjct: 239 NSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMK 298

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           PE  + YV+L N+Y  SG  +E A+V + +  + ++  P  SWIEVK + + FL+GD+SH
Sbjct: 299 PEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSH 358

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSD 650
               +IY K++ +   +   GY P+   +L D+ DE ++ VL+ HSE+LA+AFGLI T  
Sbjct: 359 PLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPK 418

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHF-KDGMCSCGDYW 703
            +PL I+++ R+C DCH  IKLIA +  REIVVRD++RFHHF  DG+CSCGD+W
Sbjct: 419 GSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 472



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 157/324 (48%), Gaps = 31/324 (9%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY  +++A      +     V + ++ T +E    +   +L  +V+ G + +A ++F  +
Sbjct: 3   TYSVILTAL----PVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGI 58

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL-ISVG 250
            ++++V+ + ++AG   +G+   A  +F +L +        TF++++   A     +  G
Sbjct: 59  DDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQG 118

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           KQ H  A+K     ++ VS AL+ MY+K G+IE A+ VF    EK  V WN++I+GYA H
Sbjct: 119 KQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQH 178

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG-LDIVA 369
           G + +ALD++ EM+   VKMD  TF  +   CT           HAGLV  G    DI+ 
Sbjct: 179 GQAMKALDVFKEMKKRKVKMDGVTFIGVFAACT-----------HAGLVEEGEKYFDIMV 227

Query: 370 -----------NSALVDFYSKWGRIEDARHVFDKML-CKNVISWNALIAGYGNHGRGEEA 417
                      NS +VD YS+ G++E A  V + M        W  ++A    H + E  
Sbjct: 228 RDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELG 287

Query: 418 VELFEQMLLNGMRPNHVTFLAVLS 441
               E+++   M+P       +LS
Sbjct: 288 RLAAEKII--AMKPEDSAAYVLLS 309


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/541 (34%), Positives = 323/541 (59%), Gaps = 5/541 (0%)

Query: 83  SSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIG 142
           +SLP+  ++  +A I         + +  EAL +F +L+ + G  +   +      AC  
Sbjct: 271 NSLPNHNLQSYNAIIVGYAR----SDKGIEALGMFRLLQ-KSGLGLDEVSLSGAXRACAV 325

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           ++   E  +V    + +  + ++ + N +L M+ +CG +++A  +F+EM  R+ VS N I
Sbjct: 326 IKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAI 385

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           IA    +G+  +   LF+ + +   +    T+ ++++A AG + ++ G ++H+  +K   
Sbjct: 386 IAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRM 445

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
           G + FV  ALIDMYSKCG +E A+ + D ++E+T V WN II+G++L   SEEA   + +
Sbjct: 446 GLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSK 505

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M + GV  D+FT++ I+  C  L ++E  KQ HA +++     D   +S LVD YSK G 
Sbjct: 506 MLEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGN 565

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           ++D + +F+K   ++ ++WNA++ GY  HG GEEA+++FE M L  ++PNH TFLAVL A
Sbjct: 566 MQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRA 625

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
           C   GL E+G   F SM  ++ + P+  HY+C+++++GR G + +A  LI G PF+    
Sbjct: 626 CGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAV 685

Query: 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           +W  LL+ C+++GN+E+ + AA  +  +EPE  + YV+L NIY ++G   E  ++ + +R
Sbjct: 686 IWRTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVTKLRKMMR 745

Query: 563 RKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLP 622
             GL+  P CSWIE+K + H FL GD++H ++KEIY  +D +  E+   GY+P+   +L 
Sbjct: 746 FNGLKKEPGCSWIEIKSEVHAFLVGDKAHPRSKEIYENLDVLTDEMKWVGYMPDTDFILN 805

Query: 623 D 623
           D
Sbjct: 806 D 806



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 115/489 (23%), Positives = 213/489 (43%), Gaps = 89/489 (18%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  +   C   +++   K+  + M+ T F+P +++ N ++ M+++C  +  A ++FD M
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGM 103

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG-----------------SRTF 234
           P+R+ VS N ++ G    GD   A  LF  +    + CG                   TF
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAM--PGTGCGVVELFDFRMGRMGTVFDRTTF 161

Query: 235 ATMIRASAGLELISVGKQLHSCALKMG--------------------------------- 261
           A ++++ + LE    G Q+H  A+KMG                                 
Sbjct: 162 AVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFK 221

Query: 262 --------------------FGDNVFVSCALIDMYSKCGSIED-AQGVFDEMSEKTTVGW 300
                               FG +V +  A +DMY KC ++ D +  +F+ +       +
Sbjct: 222 EMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSY 281

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           N II GYA      EAL ++  ++ SG+ +D  + S   R C  +       Q H   ++
Sbjct: 282 NAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMK 341

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
                +I   +A++D Y K G + +A  VF++M+ ++ +SWNA+IA +  +G  E+ + L
Sbjct: 342 SLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSL 401

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK--IKPR----AMHYAC 474
           F  ML +GM P+  T+ +VL AC+       GW+        H   IK R    +     
Sbjct: 402 FVWMLQSGMEPDEFTYGSVLKACA-------GWQALNCGMEIHNRIIKSRMGLDSFVGIA 454

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY--GMEP 532
           +I++  + G++++A  L      +T  + W A+++   +    E  +    K+   G++P
Sbjct: 455 LIDMYSKCGMMEKAEKLHDRLAEQTVVS-WNAIISGFSLQKQSEEAQKTFSKMLEMGVDP 513

Query: 533 EKLSNYVVL 541
           +  +   +L
Sbjct: 514 DNFTYATIL 522



 Score = 86.3 bits (212), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 148/381 (38%), Gaps = 73/381 (19%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           +TF+ + +  +  + +  GKQ H+  +   F   VFV+  LI MY KC  +  A  VFD 
Sbjct: 43  KTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDG 102

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLY---------------YEMRDSGVKMDHFTFS 336
           M ++ TV WN ++ GYA  G    A  L+               + M   G   D  TF+
Sbjct: 103 MPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFA 162

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW---------------- 380
           ++++ C+ L       Q H   V+ GF  D+V  SAL+D Y+K                 
Sbjct: 163 VVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKE 222

Query: 381 ------GRIEDARHVFDK----------------MLCKNVIS-----WNAL--------- 404
                 G ++   H                    M C N+       +N+L         
Sbjct: 223 MQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYN 282

Query: 405 --IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
             I GY    +G EA+ +F  +  +G+  + V+      AC+       G ++   +S  
Sbjct: 283 AIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQV-HGLSMK 341

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LG 520
              +        ++++ G+ G L EA  L+           W A++ A   NGN E  L 
Sbjct: 342 SLCQSNICVANAILDMYGKCGALVEA-CLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLS 400

Query: 521 KFAAEKLYGMEPEKLSNYVVL 541
            F      GMEP++ +   VL
Sbjct: 401 LFVWMLQSGMEPDEFTYGSVL 421


>gi|222632633|gb|EEE64765.1| hypothetical protein OsJ_19621 [Oryza sativa Japonica Group]
          Length = 656

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/597 (36%), Positives = 328/597 (54%), Gaps = 38/597 (6%)

Query: 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           R+R+AL L  + +F     V SS     ++A   +RS    ++   Y +  G     Y+ 
Sbjct: 96  RHRDALALLRVADFGLNEYVLSSA----VAATAHVRSYDMGRQCHGYAIKAGLAEHPYVC 151

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           + VL M+ +C  M +A +   +  E+    C  +                          
Sbjct: 152 SAVLHMYCQCAHMDEAVKYSKKHGEK----CRAM-------------------------- 181

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
            GS     ++   A  + + +G Q+H+ ALK     NV+V  AL+DMY KC    +A  V
Sbjct: 182 -GSCVICRVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRV 240

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           F+ + EK  V W  I+  Y  +   E+AL L+ +M   GV+ + FT+++ +  C  LA+L
Sbjct: 241 FEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATL 300

Query: 349 EHAKQAHAGLVRHG-FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           ++     A  ++ G +GL  V N AL++ YSK G +EDAR VF  M C++V+SWN++I G
Sbjct: 301 KNGNALGACTMKTGHWGLLPVCN-ALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIG 359

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           Y +HGR  EA+E F  ML     P++VTF+ VLSAC++ GL + G+     M ++  +KP
Sbjct: 360 YAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKP 419

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
              HY CM+ LL R G LDEA   I      T    W +LL++C+V  N  LG   AE++
Sbjct: 420 GKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQI 479

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
           + ++P+ +  YV+L N+Y  + +     +V R +R  G+R  P  SWI+V  + HVF S 
Sbjct: 480 FQLKPKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSE 539

Query: 588 DQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLI 646
           D+ H   ++I +K+  ++ +I   GYVP     L DV DEQ++  L YHSEKLA+AFGLI
Sbjct: 540 DKKHPYMEQITKKLQELIDKIKVIGYVPNIAVALHDVEDEQKEEHLMYHSEKLALAFGLI 599

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            T     ++I+++ RIC DCH AIKLI++ TGR IVVRD  RFH  +DG+CSC DYW
Sbjct: 600 RTPKGEAIRIMKNVRICDDCHVAIKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW 656



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 72/144 (50%), Gaps = 1/144 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N+ + +AL+LF  +E E G      TY   +++C GL +++    + +  + TG    L 
Sbjct: 262 NELFEDALQLFLDMEME-GVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLP 320

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N ++ M+ + G + DARR+F  MP R++VS N II G    G   EA   F D+    
Sbjct: 321 VCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAE 380

Query: 227 SDCGSRTFATMIRASAGLELISVG 250
                 TF  ++ A A L L+  G
Sbjct: 381 EVPSYVTFIGVLSACAQLGLVDEG 404



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 80/354 (22%), Positives = 146/354 (41%), Gaps = 79/354 (22%)

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
           +S+GK +H+  ++    D V  +  LI +Y KCG +  A+ VFD M  +  V  N +++G
Sbjct: 32  LSLGKAVHARVVRAARFDVVQYN-NLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSG 90

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           YA  G   +AL L   +R +   ++ +  S  +     + S +  +Q H   ++ G    
Sbjct: 91  YASSGRHRDALAL---LRVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEH 147

Query: 367 IVANSALVDFYSKWGRIEDA-----------RHVFDKMLCK------------------- 396
               SA++  Y +   +++A           R +   ++C+                   
Sbjct: 148 PYVCSAVLHMYCQCAHMDEAVKYSKKHGEKCRAMGSCVICRVLGHCASTKEVVLGSQVHT 207

Query: 397 ---------NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
                    NV   +AL+  YG      EA  +FE +       N V++ A+++A +++ 
Sbjct: 208 QALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVL----PEKNIVSWTAIMTAYTQNE 263

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
           L E   ++F  M  +  ++P    Y               A AL   A   T KN  A  
Sbjct: 264 LFEDALQLFLDMEME-GVRPNEFTY---------------AVALNSCAGLATLKNGNA-- 305

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           L AC     ++ G       +G+ P  + N   L+N+Y+ SG +++A  V  ++
Sbjct: 306 LGAC----TMKTGH------WGLLP--VCN--ALMNMYSKSGSVEDARRVFLSM 345


>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 197/574 (34%), Positives = 326/574 (56%), Gaps = 6/574 (1%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           A ++AC    ++ + + V +Y++  G E D+ +   +L M+ +CG +  A  +F  MP R
Sbjct: 216 AALAACCLESALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSR 275

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
            +V+ N +I G   +    EAF  F+ +  E       T   ++ A A  E    G+ +H
Sbjct: 276 TVVTWNCMIGGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVH 335

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
               +  F  +V +  AL++MYSK G ++ ++ VF +M+ KT V WN +IA Y       
Sbjct: 336 GYITRRQFLPHVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYM 395

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EA+ L+ ++ +  +  D+FT S ++     L  L   +Q H+ ++R G+G + +  +A++
Sbjct: 396 EAITLFLDLLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGENTLIMNAIM 455

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
             Y++ G +  +R +FDKM  K+VISWN +I GY  HG+G  A+E+F +M  NG+RPN  
Sbjct: 456 HMYARCGDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMFSEMKCNGLRPNES 515

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           TF++VL+ACS SGL++ GW  F SM RD+ + P+  HY CM +LLGR G L E    I  
Sbjct: 516 TFVSVLTACSVSGLTDEGWTQFNSMQRDYGMIPQIEHYGCMTDLLGRAGDLKEVMQFIEN 575

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN-----YVVLLNIYNSSG 549
            P   T  +W +LLTA R   ++++ ++AAE+++ +E ++L +     YV++ ++Y  +G
Sbjct: 576 MPIDPTFRVWGSLLTASRNRNDIDIAEYAAERIFQLEQDQLEHDNTGCYVLISSMYADAG 635

Query: 550 KLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEIS 609
           + K+   +   +  KGLR     S +E+      F++GD +H Q+K I    + +  +I 
Sbjct: 636 RWKDVERIKSLMEEKGLRRTDPRSIVELHGISCSFVNGDTTHPQSKMIQEVSNFLSGKIG 695

Query: 610 KHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
           +    P  ++    +D +     + HS +LAV FGLI+T   TP+ + ++ RIC DCH+A
Sbjct: 696 EM-RDPMNQSDPTSLDSRRTTEPNKHSVRLAVVFGLISTEARTPILVKKNVRICNDCHHA 754

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +KLI+  +GR IVV D + +H F DG C CGDYW
Sbjct: 755 LKLISKYSGRRIVVGDTNIYHQFSDGSCCCGDYW 788



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 198/418 (47%), Gaps = 26/418 (6%)

Query: 136 LISACIGLRSIREVKRVFSYMLS--TGFEPDLYMRNR------VLLMHVRCGMMIDARRL 187
           L+ AC G  +        S  L+  T  EP   +R +      ++L H   G M DA+  
Sbjct: 5   LVLACRGAAAAATTTTCASQHLAAATSKEPPPSVRPKPGGTKSLVLSHAAAGRMDDAQEA 64

Query: 188 FDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI 247
                 R+    N++I G+ D+G    A   +  +    +     TF  +++  A L  +
Sbjct: 65  LAAAGSRDAFLHNVVIRGLADAGLPGAALAAYAAMLAAGARPDRFTFPVVLKCCARLGAL 124

Query: 248 SVGKQLHSCALKMGFGD-NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
             G+  HS A+++G    +V+   +L+  Y++ G ++DA+ VFD M  +  V WN+++ G
Sbjct: 125 DEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAERVFDGMPARDVVTWNSMVDG 184

Query: 307 YALHGYSEEALDLYYEMRDS-GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
           Y  +G    AL  + EM ++  V+ D       +  C   ++L   ++ HA ++RHG   
Sbjct: 185 YVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACCLESALMQGREVHAYVIRHGMEH 244

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           D+   ++++D Y K G I  A  VF  M  + V++WN +I GY  + R EEA + F QM 
Sbjct: 245 DVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCMIGGYALNERPEEAFDCFVQMK 304

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
             G +   VT + +L+AC+++  S  G  +   ++R  +  P  +    ++E+  + G +
Sbjct: 305 AEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITR-RQFLPHVVLETALLEMYSKVGKV 363

Query: 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543
                       K+++ ++  + T   V+ N  +  +  +++Y    E ++ ++ LLN
Sbjct: 364 ------------KSSEKVFGQMTTKTLVSWNNMIAAYMYKEMY---MEAITLFLDLLN 406



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 133/243 (54%), Gaps = 1/243 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I    LN+R  EA + F  ++ EG   V   T   L++AC    S    + V  Y+    
Sbjct: 284 IGGYALNERPEEAFDCFVQMKAEG-HQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQ 342

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F P + +   +L M+ + G +  + ++F +M  + LVS N +IA  +    Y+EA  LFL
Sbjct: 343 FLPHVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFL 402

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           DL  +       T + ++ A   L L+   +Q+HS  +++G+G+N  +  A++ MY++CG
Sbjct: 403 DLLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGENTLIMNAIMHMYARCG 462

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            +  ++ +FD+M+ K  + WNT+I GYA+HG    AL+++ EM+ +G++ +  TF  ++ 
Sbjct: 463 DVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMFSEMKCNGLRPNESTFVSVLT 522

Query: 341 ICT 343
            C+
Sbjct: 523 ACS 525



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/177 (20%), Positives = 83/177 (46%), Gaps = 2/177 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T  A++ A + L  +R+ +++ SY++  G+  +  + N ++ M+ RCG ++ +R +FD+M
Sbjct: 415 TMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGENTLIMNAIMHMYARCGDVLSSREIFDKM 474

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG- 250
             ++++S N +I G    G    A  +F ++          TF +++ A +   L   G 
Sbjct: 475 AAKDVISWNTMIMGYAIHGQGRSALEMFSEMKCNGLRPNESTFVSVLTACSVSGLTDEGW 534

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAG 306
            Q +S     G    +     + D+  + G +++     + M  + T   W +++  
Sbjct: 535 TQFNSMQRDYGMIPQIEHYGCMTDLLGRAGDLKEVMQFIENMPIDPTFRVWGSLLTA 591


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/576 (33%), Positives = 336/576 (58%), Gaps = 9/576 (1%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFE--PDLYMRNRVLLMHVRCGMMIDARRLF---DE 190
            + ACI  RS+   +++  ++L +      +  ++ +++ ++  CG + +ARR+F   DE
Sbjct: 76  FLHACISRRSLEHGRKLHLHLLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDE 135

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
            P    V   M I G   +G   EA LL+ D+       G+  F+  ++A + L+   VG
Sbjct: 136 KPPEEPVWVAMAI-GYSRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNALVG 194

Query: 251 KQLHSCALKMGFGD-NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           + +H+  +K   G+ +  V+ AL+ +Y + G  ++   VF+EM ++  V WNT+IAG+A 
Sbjct: 195 RAIHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAG 254

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G   E L  +  M+  G+     T + ++ +C ++ +L   K+ H  +++     D+  
Sbjct: 255 QGRVFETLSAFRVMQREGMGFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPL 314

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            ++L+D Y+K G I     VFD+M  K++ SWN ++AG+  +G+  EA+ LF++M+  G+
Sbjct: 315 LNSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGI 374

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
            PN +TF+A+LS CS SGL+  G  +F ++ +D  ++P   HYAC++++LGR G  DEA 
Sbjct: 375 EPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEAL 434

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549
           ++    P + + ++W +LL +CR+ GN+ L +  AE+L+ +EP    NYV+L NIY ++G
Sbjct: 435 SVAENIPMRPSGSIWGSLLNSCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAG 494

Query: 550 KLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV-DRMMLEI 608
             ++   V   +   G++    CSWI++K + H F++G  S  +    Y+K+ + +   +
Sbjct: 495 MWEDVKRVREMMALTGMKKDAGCSWIQIKHKIHTFVAGGSSDFRCSAEYKKIWNELSNAV 554

Query: 609 SKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCH 667
              GYVP    +L D++E+ + V +  HSE+LA  F LINT    P++I ++ R+C DCH
Sbjct: 555 KNLGYVPNTGVVLHDINEEMKAVWVCEHSERLAAVFALINTGAGMPIRITKNLRVCVDCH 614

Query: 668 NAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + +K ++ VT R IV+RD +RFHHF++G CSC DYW
Sbjct: 615 SWMKAVSKVTRRLIVLRDTNRFHHFENGSCSCKDYW 650



 Score = 61.6 bits (148), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 96/206 (46%), Gaps = 5/206 (2%)

Query: 109 RYREALELFEILEFEG-GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
           R  E L  F +++ EG GF     T   ++  C  + ++   K +   +L +    D+ +
Sbjct: 257 RVFETLSAFRVMQREGMGFSW--ITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPL 314

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            N ++ M+ +CG +    ++FD M  ++L S N ++AG   +G   EA  LF ++     
Sbjct: 315 LNSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGI 374

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSCALIDMYSKCGSIEDAQ 286
           +    TF  ++   +   L S GK+L S  ++  G   ++     L+D+  + G  ++A 
Sbjct: 375 EPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEAL 434

Query: 287 GVFDEMSEKTTVG-WNTIIAGYALHG 311
            V + +  + +   W +++    L+G
Sbjct: 435 SVAENIPMRPSGSIWGSLLNSCRLYG 460


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/602 (34%), Positives = 339/602 (56%), Gaps = 40/602 (6%)

Query: 140 CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSC 199
           C   R++   K + ++++  G      + N ++ ++ +CG    A ++FDEMP R+ ++ 
Sbjct: 13  CARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAW 72

Query: 200 NMIIAGMID---SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256
             ++  +     SG  L  F           D     F+ +++A A L  I  G+Q+H  
Sbjct: 73  ASVLTALNQANLSGKTLSVFSSVGSSSGLRPD--DFVFSALVKACANLGSIDHGRQVHCH 130

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
            +   + ++  V  +L+DMY+KCG +  A+ VFD +  K T+ W  +++GYA  G  EEA
Sbjct: 131 FIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEA 190

Query: 317 LDLY-------------------------------YEMRDSGVK-MDHFTFSMIIRICTR 344
           L+L+                                EMR   V  +D    S I+  C  
Sbjct: 191 LELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACAN 250

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           LA+    +Q H  ++  GF   +  ++AL+D Y+K   +  A+ +F +M  ++V+SW +L
Sbjct: 251 LAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSL 310

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I G   HG+ E+A+ L++ M+ +G++PN VTF+ ++ ACS  G  E+G E+FQSM++D+ 
Sbjct: 311 IVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYG 370

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           I+P   HY C+++LLGR GLLDEA  LI   PF   +  WAALL+AC+  G  ++G   A
Sbjct: 371 IRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIA 430

Query: 525 EKLY-GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
           + L    + +  S Y++L NIY S+    + +E  R L    +R  P  S +EV+K+  V
Sbjct: 431 DHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEV 490

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEIS-KHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAV 641
           F +G+ SH   ++I+R + ++  E+  ++GYVP+   +L D+DEQE +++L +HSE+ AV
Sbjct: 491 FYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAV 550

Query: 642 AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
           A+GL+     TP++IV++ R+C DCH  +K I+ +T REI+VRDA+R+HHFK G CSC D
Sbjct: 551 AYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCND 610

Query: 702 YW 703
           +W
Sbjct: 611 FW 612



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 160/328 (48%), Gaps = 34/328 (10%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE- 190
            + AL+ AC  L SI   ++V  + + + +  D  +++ ++ M+ +CG++  A+ +FD  
Sbjct: 107 VFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSI 166

Query: 191 ------------------------------MPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
                                         +P +NL S   +I+G + SG  LEAF +F 
Sbjct: 167 RVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFT 226

Query: 221 DLWEEFSDC-GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
           ++  E  D       ++++ A A L     G+Q+H   + +GF   VF+S ALIDMY+KC
Sbjct: 227 EMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKC 286

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
             +  A+ +F  M  +  V W ++I G A HG +E+AL LY +M   GVK +  TF  +I
Sbjct: 287 SDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLI 346

Query: 340 RICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKN 397
             C+ +  +E  ++    + + +G    +   + L+D   + G +++A ++   M    +
Sbjct: 347 YACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPD 406

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQML 425
             +W AL++     GRG+  + + + ++
Sbjct: 407 EPTWAALLSACKRQGRGQMGIRIADHLV 434



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 111/238 (46%), Gaps = 18/238 (7%)

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +++C R  +L  AK  HA +V+ G        + LV+ Y K G    A  VFD+M  ++ 
Sbjct: 10  LQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDH 69

Query: 399 ISWNALIAGYGNHG-RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE--- 454
           I+W +++         G+           +G+RP+   F A++ AC+  G  + G +   
Sbjct: 70  IAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHC 129

Query: 455 --IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACR 512
             I    + D  +K      + ++++  + GLL+ A A+      K T + W A+++   
Sbjct: 130 HFIVSEYANDEVVK------SSLVDMYAKCGLLNSAKAVFDSIRVKNTIS-WTAMVSGYA 182

Query: 513 VNGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRML 569
            +G  E     A +L+ + P K L ++  L++ +  SGK  EA  V   +RR+ + +L
Sbjct: 183 KSGRKE----EALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDIL 236



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 89/193 (46%), Gaps = 1/193 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   V + +  EA  +F  +  E    +      +++ AC  L +    ++V   +++ G
Sbjct: 209 ISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALG 268

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F+  +++ N ++ M+ +C  +I A+ +F  M  R++VS   +I GM   G   +A  L+ 
Sbjct: 269 FDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYD 328

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSCALIDMYSKC 279
           D+          TF  +I A + +  +  G++L     K  G   ++     L+D+  + 
Sbjct: 329 DMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRS 388

Query: 280 GSIEDAQGVFDEM 292
           G +++A+ +   M
Sbjct: 389 GLLDEAENLIHTM 401


>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
 gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
          Length = 908

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/574 (35%), Positives = 333/574 (58%), Gaps = 2/574 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+ + ++AC       E K + + ++  G   ++ + N ++ ++ + G+MI+A+++F  M
Sbjct: 335 TFTSALAACSDPEFATEGKILHALVIHVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTM 394

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRAS-AGLELISVG 250
           P+R+ V+ N +I G  DS +  EA   F  + EE       T + ++ A  A  +L+  G
Sbjct: 395 PKRDGVTWNALIGGHADSEEPDEALKAFKLMREEGVPINYITISNVLGACLAPNDLLEHG 454

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
             +H+  +  GF  + +V  +LI MY+KCG +  +  +FD ++ K    WN ++A  A H
Sbjct: 455 MPIHAFIILTGFQSDEYVQNSLITMYAKCGDLNSSNNIFDRLTSKNASAWNAMMAANAHH 514

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
           G+ EEAL    EMR +GV +D F+FS  +    +LA LE  +Q H   V+ G   +    
Sbjct: 515 GHMEEALKFLLEMRRAGVNVDEFSFSECLAAAAKLAILEEGQQLHGLAVKLGCDSNPFVA 574

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           SA +D Y K G I+D   +  + + ++ +SWN L + +  HG  E+A E F +M+  G++
Sbjct: 575 SATMDMYGKCGEIDDVLRIIPRPINRSRLSWNILTSSFSRHGFFEKAKETFHEMINLGVK 634

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           P+HVTF+++LSACS  G+ E G   + SM ++  I  +  H  C+I+LLGR G   EA  
Sbjct: 635 PDHVTFVSLLSACSHGGMVEEGLAYYDSMIKEFGIPAKIGHCVCIIDLLGRSGRFAEAET 694

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
            I+  P   T ++W +LL AC+ +GNLELG+ A E L  ++P   S YV+  NI  ++GK
Sbjct: 695 FIKEMPVSPTDHVWRSLLAACKTHGNLELGRKAVENLLKLDPSDDSAYVLYSNICATTGK 754

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
            ++  ++ R +    ++  PACSW+++K +  +F  GD SH Q  EIY K++ +   I +
Sbjct: 755 WEDVEKIRRQMGLNKIKKKPACSWVKLKNKLSLFGMGDHSHPQASEIYAKLEELKKMIKE 814

Query: 611 HGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
            GY+P+    L D D EQ++  L  HSE+LA+A+GLI++ + + L+I ++ R+C DCH+ 
Sbjct: 815 AGYIPDISYALQDTDEEQKEHNLWNHSERLALAYGLISSPEGSTLKIFKNLRVCGDCHSV 874

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            K  + + GR+IV+RD  RFH F  G CSC DYW
Sbjct: 875 YKFASGILGRKIVLRDPYRFHQFSGGQCSCTDYW 908



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 203/403 (50%), Gaps = 10/403 (2%)

Query: 110 YREALELF-EILEFEGGFDVGSSTYDALISACIGLRS---IREVKRVFSYMLSTGFEPDL 165
           YRE++  F E+ +F  G         +L++AC   RS   + E  +V  +++  G   D+
Sbjct: 10  YRESMRFFNEMRDF--GVKPSGIAVASLVTAC--ERSEWMLIEGVQVHGFIVKVGLLSDV 65

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
           ++   ++ ++   G+  DA ++F EM  +N+VS   ++   +D G+      ++  +  E
Sbjct: 66  FVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYRRMRSE 125

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
              C   T +++I     LE   +G Q+    +K G   NV V+ +LI M+   GS+E+A
Sbjct: 126 GMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFGSVEEA 185

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
             VF  M E  T+ WN++IA Y  +G  +E+L  +  M     +++  T S ++  C  +
Sbjct: 186 CYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGCGSV 245

Query: 346 ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
            +L+  +  H+ +++ G+  ++ A++ L+  YS  GR EDA  VF  M+ K++ISWN+++
Sbjct: 246 DNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMM 305

Query: 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
           A Y   G   +A++L   M       N+VTF + L+ACS    +  G +I  ++     +
Sbjct: 306 ACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEG-KILHALVIHVGL 364

Query: 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
               +    ++ L  + GL+ EA  + +  P K     W AL+
Sbjct: 365 HENVIVGNALVTLYAKSGLMIEAKKVFQTMP-KRDGVTWNALI 406



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 99/332 (29%), Positives = 168/332 (50%), Gaps = 1/332 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G     +T  ++IS C+ L +     +V  +++  G E ++ + N ++ M    G + +A
Sbjct: 126 GMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFGSVEEA 185

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
             +F  M E + +S N +IA  I +G   E+   F  ++    +  S T +TM+     +
Sbjct: 186 CYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGCGSV 245

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
           + +  G+ +HS  LK G+  NV  S  LI MYS  G  EDA+ VF  M EK  + WN+++
Sbjct: 246 DNLKWGRGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMM 305

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           A YA  G   +AL L   M       ++ TF+  +  C+        K  HA ++  G  
Sbjct: 306 ACYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIHVGLH 365

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            +++  +ALV  Y+K G + +A+ VF  M  ++ ++WNALI G+ +    +EA++ F+ M
Sbjct: 366 ENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLM 425

Query: 425 LLNGMRPNHVTFLAVLSAC-SRSGLSERGWEI 455
              G+  N++T   VL AC + + L E G  I
Sbjct: 426 REEGVPINYITISNVLGACLAPNDLLEHGMPI 457



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 100/213 (46%), Gaps = 3/213 (1%)

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA-SLEHAKQAHAGLVRHG 362
           ++G+   G   E++  + EMRD GVK      + ++  C R    L    Q H  +V+ G
Sbjct: 1   MSGFVRAGSYRESMRFFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVG 60

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
              D+   ++LV  Y  +G   DA  VF +M+ KNV+SW AL+  Y ++G     + ++ 
Sbjct: 61  LLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYR 120

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           +M   GM  N  T  +V+S C        G+++   + + + ++        +I + G  
Sbjct: 121 RMRSEGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIK-YGLETNVSVANSLISMFGYF 179

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           G ++EA  +  G     T + W +++ A   NG
Sbjct: 180 GSVEEACYVFSGMDEHDTIS-WNSMIAAYIRNG 211


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/453 (41%), Positives = 289/453 (63%), Gaps = 1/453 (0%)

Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
           M RA A L  +  G+++HS A++ GF   VFV   L+ MY+ CG  E A  +F+ M+E+ 
Sbjct: 1   MQRAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERN 60

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
            V WN++I GYAL+G   EAL L+ EM   GV+ D FT   ++  C  L +L   ++AH 
Sbjct: 61  LVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHV 120

Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416
            +V+ G   ++ A +AL+D Y+K G I  A  VFD+M  K+V+SW +LI G   +G G+E
Sbjct: 121 YMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKE 180

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476
           A+ELF+++   G+ P+ +TF+ VL ACS  G+ + G++ F+ M  ++ I P+  HY CM+
Sbjct: 181 ALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMV 240

Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
           +LLGR GL+ +A   I+  P +    +W  LL AC ++G+L LG+ A  +L  +EP+   
Sbjct: 241 DLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSG 300

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKE 596
           +YV+L N+Y S  +  +  +V RT+ R+G++  P  S +E++ + H F+ GD+SH QT+E
Sbjct: 301 DYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEE 360

Query: 597 IYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQ 655
           IY K+  +   +   GYVP    +L D++E+E+   LSYHSEK+A+AF LINT+   P++
Sbjct: 361 IYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIR 420

Query: 656 IVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
           +V++ R+C DCH AIKLI+ V  REIVVRD SR
Sbjct: 421 VVKNLRVCADCHLAIKLISKVFDREIVVRDRSR 453



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 156/305 (51%), Gaps = 33/305 (10%)

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           L  +RE ++V S  +  GFE  ++++N ++ M+  CG    A +LF+ M ERNLV+ N +
Sbjct: 8   LMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSV 67

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           I G   +G   EA  LF ++     +    T  +++ A A L  +++G++ H   +K+G 
Sbjct: 68  INGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGL 127

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             N+    AL+D+Y+KCGSI  A  VFDEM EK+ V W ++I G A++G+ +EAL+L+ E
Sbjct: 128 DGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKE 187

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           +   G+     TF  ++  C+           H G+V  GF           D++    R
Sbjct: 188 LERKGLMPSEITFVGVLYACS-----------HCGMVDEGF-----------DYFK---R 222

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           +++   +  K     +  +  ++   G  G  ++A E  + M    M+PN V +  +L A
Sbjct: 223 MKEEYGIVPK-----IEHYGCMVDLLGRAGLVKQAHEFIQNM---PMQPNAVVWRTLLGA 274

Query: 443 CSRSG 447
           C+  G
Sbjct: 275 CTIHG 279



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 3/216 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I    LN R  EAL LF  +   G  +    T  +L+SAC  L ++   +R   YM+ 
Sbjct: 66  SVINGYALNGRPNEALTLFREMGLRG-VEPDGFTMVSLLSACAELGALALGRRAHVYMVK 124

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G + +L+  N +L ++ +CG +  A ++FDEM E+++VS   +I G+  +G   EA  L
Sbjct: 125 VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALEL 184

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFGDNVFVSCALIDMYS 277
           F +L  +       TF  ++ A +   ++  G         + G    +     ++D+  
Sbjct: 185 FKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLG 244

Query: 278 KCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGY 312
           + G ++ A      M  +   V W T++    +HG+
Sbjct: 245 RAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGH 280


>gi|449451241|ref|XP_004143370.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Cucumis sativus]
          Length = 908

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/640 (33%), Positives = 348/640 (54%), Gaps = 37/640 (5%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I  LV   +Y EA + F  ++   G  V   +   L++AC G     + +++ +  L  G
Sbjct: 269 ISSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLSTLLTACAGSVKPMKGQQLHALALKVG 328

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP---------------------------- 192
            E  L + + ++  + +CG   D   LF+ MP                            
Sbjct: 329 LESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFN 388

Query: 193 ---ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
              +RN +S N ++AG+  + D   A  LF+++ EE  +    T  ++I A   L+   V
Sbjct: 389 KMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKV 448

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT--TVGWNTIIAGY 307
            +Q+    +K G   N  +  AL+DMY++CG +EDA+ +F + S +   T    ++I GY
Sbjct: 449 SQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIFYQRSLENDYTAMLTSMICGY 508

Query: 308 ALHGYSEEALDLYYEMRDSG-VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           A +G   EA+ L++  +  G + MD    + I+ +C  +   E  KQ H   ++ G   +
Sbjct: 509 ARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCGSIGFHEMGKQMHCHALKSGLITE 568

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
               +A V  YSK   ++DA  VF+ M  ++++SWN L+AG+  H +G++A+ ++++M  
Sbjct: 569 TGVGNATVSMYSKCWNMDDAVRVFNTMNMQDIVSWNGLVAGHVLHWQGDKALGIWKKMEK 628

Query: 427 NGMRPNHVTFLAVLSACSRSGLS--ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
            G++P+ +TF  ++SA   + L+  +    +F SM  +H IKP   HYA  I +LGR GL
Sbjct: 629 AGIKPDSITFALIISAYKHTELNLVDSCRSLFVSMETEHNIKPTLEHYASFISVLGRWGL 688

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L+EA   IR  P +    +W ALL +CR+N N  L K AA  +  +EP+   +Y++  N+
Sbjct: 689 LEEAEQTIRNMPLEPDVYVWRALLNSCRINKNERLEKLAARNILAVEPKDPLSYILKSNL 748

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           Y++SG+   + +V   +R KG R  P+ SWI  + + H F + D+SH Q K+IY  ++ +
Sbjct: 749 YSASGRWYYSEKVREDMREKGFRKHPSQSWIIHENKIHSFYARDRSHPQGKDIYSGLEIL 808

Query: 605 MLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
           +LE  K GYVP+   +L +V+E Q++  L YHS KLA  FG++ T    P+QIV++ R+C
Sbjct: 809 ILECLKVGYVPDTSFVLQEVEERQKKEFLFYHSGKLAATFGILMTKPGKPIQIVKNVRLC 868

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCHN +K +++VT R+I++RD S FH F DG CSC DYW
Sbjct: 869 GDCHNFLKYVSIVTRRKILLRDTSGFHWFIDGQCSCTDYW 908



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 185/380 (48%), Gaps = 44/380 (11%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA+ELF  +  + G +    T+ A+++ACI     +   +V   ++  G    +++ N +
Sbjct: 179 EAVELFFAM-LDSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCVFICNAL 237

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + ++ +CG +    RLF+EMPER++ S N +I+ ++    Y EAF    D +     C  
Sbjct: 238 MGLYCKCGFLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAF----DYFRGMQLCKG 293

Query: 232 R-----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED-- 284
                 + +T++ A AG      G+QLH+ ALK+G   ++ VS +LI  Y+KCGS  D  
Sbjct: 294 LKVDHFSLSTLLTACAGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVT 353

Query: 285 -----------------------------AQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
                                        A  VF++M ++  + +N ++AG + +     
Sbjct: 354 DLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGSR 413

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           AL+L+ EM + GV++   T + II  C  L S + ++Q    +++ G   +    +ALVD
Sbjct: 414 ALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVD 473

Query: 376 FYSKWGRIEDARHVFDKMLCKNVIS--WNALIAGYGNHGRGEEAVELFEQMLLNG-MRPN 432
            Y++ GR+EDA  +F +   +N  +    ++I GY  +G+  EA+ LF      G +  +
Sbjct: 474 MYTRCGRMEDAEKIFYQRSLENDYTAMLTSMICGYARNGKLNEAISLFHSGQSEGAIVMD 533

Query: 433 HVTFLAVLSACSRSGLSERG 452
            V   ++LS C   G  E G
Sbjct: 534 EVMSTSILSLCGSIGFHEMG 553



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 153/300 (51%), Gaps = 5/300 (1%)

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            E D+++ N ++  +++ G++ DA ++F  +   N+VS   +I+G   S    EA  LF 
Sbjct: 126 LEEDIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSKSDWEDEAVELFF 185

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            + +   +    TF  ++ A        +G Q+H   +K+G    VF+  AL+ +Y KCG
Sbjct: 186 AMLDSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCVFICNALMGLYCKCG 245

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSMII 339
            ++    +F+EM E+    WNT+I+        +EA D +  M+   G+K+DHF+ S ++
Sbjct: 246 FLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLSTLL 305

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
             C         +Q HA  ++ G    +  +S+L+ FY+K G   D   +F+ M  ++VI
Sbjct: 306 TACAGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVI 365

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           +W  +I  Y   G  + AVE+F +M     + N +++ AVL+  SR+    R  E+F  M
Sbjct: 366 TWTGMITSYMEFGMLDSAVEVFNKM----PKRNCISYNAVLAGLSRNDDGSRALELFIEM 421



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 3/208 (1%)

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           + + +H+  LK+   +++F+  ALI  Y K G + DA  VF  +S    V +  +I+G++
Sbjct: 115 LARAVHAQFLKLE--EDIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFS 172

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
              + +EA++L++ M DSG++ + +TF  I+  C R    +   Q H  +V+ G    + 
Sbjct: 173 KSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCVF 232

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM-LLN 427
             +AL+  Y K G ++    +F++M  +++ SWN +I+      + +EA + F  M L  
Sbjct: 233 ICNALMGLYCKCGFLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCK 292

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEI 455
           G++ +H +   +L+AC+ S    +G ++
Sbjct: 293 GLKVDHFSLSTLLTACAGSVKPMKGQQL 320



 Score = 46.6 bits (109), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 94  SAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVF 153
           +A + S I     N +  EA+ LF   + EG   +      +++S C  +      K++ 
Sbjct: 498 TAMLTSMICGYARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCGSIGFHEMGKQMH 557

Query: 154 SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
            + L +G   +  + N  + M+ +C  M DA R+F+ M  +++VS N ++AG +      
Sbjct: 558 CHALKSGLITETGVGNATVSMYSKCWNMDDAVRVFNTMNMQDIVSWNGLVAGHVLHWQGD 617

Query: 214 EAFLLFLDLWEEFSDCG----SRTFATMIRASAGLEL 246
           +A    L +W++    G    S TFA +I A    EL
Sbjct: 618 KA----LGIWKKMEKAGIKPDSITFALIISAYKHTEL 650


>gi|414876780|tpg|DAA53911.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 491

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/490 (38%), Positives = 297/490 (60%), Gaps = 1/490 (0%)

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
           A  LF ++     D  +  FA+++  +  L  I +G+Q+H+  + +G     F+  ALID
Sbjct: 2   ALQLFREMQTLSFDRHTLPFASLLSVAGALPDIKIGRQIHAQLILLGLTLEDFMGNALID 61

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334
           MYSKCG ++ A+ +F   S+KT + W  +I G   +G  EEAL L+  MR +G+  D  T
Sbjct: 62  MYSKCGMLDAAKTIFANKSDKTAISWTALITGCVQNGQHEEALQLFCNMRRAGLSPDRAT 121

Query: 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394
            S II+  + L  +   +Q HA L   G    + + SAL+D Y+K G +++A   F++M 
Sbjct: 122 CSSIIKSSSSLGVIGIGRQLHAYLTTSGHMSSVFSGSALLDMYAKCGCLDEAIRTFNEMP 181

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
            KN I+WNA+I+ Y  +G+ + A+ +F+ ML  G  P+ VTFL+VL+ACS +GL+E   +
Sbjct: 182 EKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGFCPDPVTFLSVLAACSHNGLAEECMK 241

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
            F  M   + + P   HY+C+I+ LGR G  D+   ++   PF+    +W+++L +CR+ 
Sbjct: 242 YFDLMRYYNSMSPWKEHYSCVIDALGRAGCFDKIQKVLDEMPFEADPVIWSSILHSCRIY 301

Query: 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
           GN +L   AAE L+ M P   + YV+L NIY  +G  + AA V + +R +G+R     SW
Sbjct: 302 GNQDLATVAAENLFTMVPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGVRKESGNSW 361

Query: 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVD-EQEQRVLS 633
           +E+K++ ++F S D ++    EI  +++R+  E+ K GY P+    L  VD +Q+   L 
Sbjct: 362 VEIKQKIYMFSSNDHTNPMIDEIKEELERLYEEMDKQGYEPDTSCALHMVDNKQKLESLK 421

Query: 634 YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693
           YHSE+LA+AF LINT   TP+ ++++   C DCH AIK+I+ +  R+I+VRD+ RFHHFK
Sbjct: 422 YHSERLAIAFALINTPPGTPITVMKNLSACLDCHAAIKMISKIVNRDIIVRDSRRFHHFK 481

Query: 694 DGMCSCGDYW 703
           DG CSCGDYW
Sbjct: 482 DGFCSCGDYW 491



 Score =  119 bits (297), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 176/361 (48%), Gaps = 15/361 (4%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           AL+LF  ++    FD  +  + +L+S    L  I+  +++ + ++  G   + +M N ++
Sbjct: 2   ALQLFREMQ-TLSFDRHTLPFASLLSVAGALPDIKIGRQIHAQLILLGLTLEDFMGNALI 60

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            M+ +CGM+  A+ +F    ++  +S   +I G + +G + EA  LF ++          
Sbjct: 61  DMYSKCGMLDAAKTIFANKSDKTAISWTALITGCVQNGQHEEALQLFCNMRRAGLSPDRA 120

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T +++I++S+ L +I +G+QLH+     G   +VF   AL+DMY+KCG +++A   F+EM
Sbjct: 121 TCSSIIKSSSSLGVIGIGRQLHAYLTTSGHMSSVFSGSALLDMYAKCGCLDEAIRTFNEM 180

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            EK ++ WN +I+ YA +G ++ A+ ++  M   G   D  TF  ++  C+     E   
Sbjct: 181 PEKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGFCPDPVTFLSVLAACSHNGLAEECM 240

Query: 353 QAHAGLVRHGFGLDIVAN--SALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAG-- 407
           + +  L+R+   +       S ++D   + G  +  + V D+M    + + W++++    
Sbjct: 241 K-YFDLMRYYNSMSPWKEHYSCVIDALGRAGCFDKIQKVLDEMPFEADPVIWSSILHSCR 299

Query: 408 -YGNHGRGEEAVE-LFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
            YGN      A E LF       M P   T   +LS       +  G    + + RD  +
Sbjct: 300 IYGNQDLATVAAENLFT------MVPTDATAYVILSNIYAKAGNWEGAARVKKIMRDRGV 353

Query: 466 K 466
           +
Sbjct: 354 R 354


>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
          Length = 717

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/598 (31%), Positives = 348/598 (58%), Gaps = 6/598 (1%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST-GFEPDLYMRNR 170
           EA+ L E              Y  L+ ACI  +S+    ++ S +L+      +  + ++
Sbjct: 120 EAVTLIENSSSSPSNLSTPEAYTDLLHACISAKSLHHGIKICSLILNNPSLRHNPKLLSK 179

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA---GMIDSGDYLEAFLLFLDLWEEFS 227
           ++ +   C  +  AR++FD++ + +L++  +  A   G   +G   +A ++++D+   F 
Sbjct: 180 LITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFI 239

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
           + G+ + +  ++A   L+ + VG+ +H+  +K     +  V   L+ +Y + G  +DA+ 
Sbjct: 240 EPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARK 299

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           VFD MSE+  V WN++I+  +      E  +L+ +M++  +     T + I+  C+R+A+
Sbjct: 300 VFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAA 359

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           L   K+ HA +++     D+   ++L+D Y K G +E +R VFD ML K++ SWN ++  
Sbjct: 360 LLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNC 419

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           Y  +G  EE + LFE M+ +G+ P+ +TF+A+LS CS +GL+E G  +F+ M  + ++ P
Sbjct: 420 YAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSP 479

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
              HYAC++++LGR G + EA  +I   PFK + ++W +LL +CR++GN+ +G+ AA++L
Sbjct: 480 ALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKEL 539

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
           + +EP    NYV++ NIY  +       ++   ++++G++    CSW++VK +  +F++G
Sbjct: 540 FVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAG 599

Query: 588 DQSHVQTKEIYRKVDRMMLE-ISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGL 645
                +  + Y+KV   + E I K GY P    +L DVDE+ +   +  HSE+LA  + L
Sbjct: 600 GGYEFRNSDEYKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSL 659

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I+T +  P++I ++ R+C DCH+ +K+++ VT R IV+RD  RFHHF DG+CSC DYW
Sbjct: 660 IHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 717


>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
          Length = 703

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/542 (37%), Positives = 321/542 (59%), Gaps = 11/542 (2%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMI-DARRLFDEMPERNLVSCNMIIAGMIDSGDYLE 214
           + S+   PD+   N ++    R    +  AR LFD MP+R+  + + +++G    G    
Sbjct: 85  LFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYARHGQPEA 144

Query: 215 AFLLFLDLWEEFSDCGSR---TFATMIRASAGLELISVGKQLHSCALKMGF----GDNVF 267
           A  L+  + EE  + G+    T ++ + A+A       G++LH   ++ G     GD V 
Sbjct: 145 ALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVL 204

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDS 326
            S AL DMY+KCG ++DA+ VFD M  +  V W  ++  Y   G   E   L+  M R  
Sbjct: 205 WS-ALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTR 263

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           GV+ + FT++ ++R C   A     +Q H  + + G G    A SAL+  YSK G +  A
Sbjct: 264 GVRPNEFTYAGVLRACAEFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSA 323

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
             VF+ M   +++SW A+I+GY  +G+ EEA+  F+  L +G++P+HVTF+ VLSAC+ +
Sbjct: 324 VRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHA 383

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           GL ++G EIF S+   + I+  A HYAC+I+LL R G  + A  +I     K  K +WA+
Sbjct: 384 GLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWAS 443

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           LL  CR++ N+ L + AAE L+ +EPE  + YV L NIY S G   E  +V R +  KG+
Sbjct: 444 LLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGI 503

Query: 567 RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-D 625
             +PA SWIEV ++ HVFL GD+SH +  EIY  + ++ +++ + GYV + + +L DV D
Sbjct: 504 TKMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHDVED 563

Query: 626 EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
           EQ+++ + YHSE+LAVAFG+I + + +P+++ ++ RIC DCH AIKLI+ +  R+I+VRD
Sbjct: 564 EQKEQDIGYHSERLAVAFGIIASPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRD 623

Query: 686 AS 687
           ++
Sbjct: 624 SN 625



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 175/562 (31%), Positives = 271/562 (48%), Gaps = 101/562 (17%)

Query: 174 MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR- 232
           M+ +CG + DARR+FD MP R+ VS   ++    D G   E F LFL +       G R 
Sbjct: 211 MYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHM---LRTRGVRP 267

Query: 233 ---TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              T+A ++RA A   + S G+Q+H    K G GD+ F   AL+ MYSKCG +  A  VF
Sbjct: 268 NEFTYAGVLRACAEFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVF 327

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
           + M++   V W  +I+GYA +G  EEAL  +     SG+K DH TF  ++  C       
Sbjct: 328 EAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSAC------- 380

Query: 350 HAKQAHAGLVRHG----------FGLDIVAN--SALVDFYSKWGRIEDARHVFDKMLCK- 396
               AHAGLV  G          + ++  A+  + ++D  S+ G+ E A  +   M  K 
Sbjct: 381 ----AHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKP 436

Query: 397 NVISWNALIAG---YGNHGRGEEAVE-LFEQMLLNGMRP-NHVTFLAVLSACSRSGLSER 451
           N   W +L+ G   + N G    A E LFE      + P N  T++ + +  +  GL + 
Sbjct: 437 NKFLWASLLGGCRIHKNVGLARRAAEALFE------IEPENPATYVTLANIYASVGLFDE 490

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL----------DEAFALIRGAPFKTTK 501
             ++ + M      K   M  +  IE+  R  +           DE +AL++    K  +
Sbjct: 491 VEDVRRIMESKGITK---MPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVE 547

Query: 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
             + A         ++E        L+ +E E+        +I   S +L  A  +I + 
Sbjct: 548 EGYVA---------DIEF------VLHDVEDEQKEQ-----DIGYHSERLAVAFGIIAS- 586

Query: 562 RRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLL 621
                   P  S I+V K  ++ + GD  H   K I + V R                ++
Sbjct: 587 --------PEGSPIKVFK--NLRICGD-CHAAIKLISQIVQR--------------DIIV 621

Query: 622 PDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREI 681
            D +  +++ + YHSE+LAVAFG+I + + +P+++ ++ RIC DCH AIKLI+ +  R+I
Sbjct: 622 RDSNSLKEQDIGYHSERLAVAFGIIASPEGSPIKVFKNLRICGDCHTAIKLISQIVQRDI 681

Query: 682 VVRDASRFHHFKDGMCSCGDYW 703
           +VRD++RFHHFKDG+CSC DYW
Sbjct: 682 IVRDSNRFHHFKDGICSCRDYW 703



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 94/230 (40%), Gaps = 5/230 (2%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + +E+     R  E   LF  +    G      TY  ++ AC         ++V   M  
Sbjct: 238 AMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEFAVESFGRQVHGRMAK 297

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           +G     +  + +L M+ +CG M  A R+F+ M + +LVS   +I+G   +G   EA   
Sbjct: 298 SGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRY 357

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL-HSCALKMGFGDNVFVSCALIDMYS 277
           F             TF  ++ A A   L+  G ++ HS   +            +ID+ S
Sbjct: 358 FDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLS 417

Query: 278 KCGSIEDAQGVFDEMSEKTT-VGWNTIIAGYALH---GYSEEALDLYYEM 323
           + G  E A+ +   M+ K     W +++ G  +H   G +  A +  +E+
Sbjct: 418 RSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEI 467


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/607 (33%), Positives = 352/607 (57%), Gaps = 42/607 (6%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   V N  Y++AL +++ + +  GF     TY  ++ A     S+    ++   +L  G
Sbjct: 92  IRSYVNNHLYKDALLVYKTM-YTQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIG 150

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            + +LY+ N ++ M+ +C  + +A+++ DE+P R++VS N +++    +G + +A  L  
Sbjct: 151 LDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCR 210

Query: 221 DLWE---EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           ++     + +DC   T A+++ A                       DNV        +Y 
Sbjct: 211 EMEALNLKPNDC---TMASLLPAVTNTT-----------------SDNV--------LYV 242

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           K         +F ++++K+ + WN +IA Y  +   +EA+ LY +M  +GV+ D  +   
Sbjct: 243 K--------EMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVS 294

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397
           ++     L++L   ++ H    R     +++  +AL+D Y+K G + DAR VF++M  ++
Sbjct: 295 VLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRD 354

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           V+SW ++I+ YG  G+G +AV +F +M  +G+ P+ + F++VL+ACS +GL + G   F 
Sbjct: 355 VVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFN 414

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
            M+ +  I P+  H+AC+++LLGR G +DEA+  IR  P +  + +W  LL+ACRV  N+
Sbjct: 415 LMA-ECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNM 473

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577
            +G  AA+KL  + PE    YV+L NIY  +G+  + A +   + RKG++ LP  S +E+
Sbjct: 474 NIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVEL 533

Query: 578 KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHS 636
               H FL+GD SH Q+K+IY ++D ++ ++ + GY+PE  + L DV+E+++   L+ HS
Sbjct: 534 NDGVHTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMPETDSALHDVEEEDKEYHLAVHS 593

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           EKLAVAF +INT   TP+++ ++ R+C DCH A KLI+ +  REI++RD  RFHHF++G 
Sbjct: 594 EKLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLISKIAEREIIIRDTHRFHHFQEGC 653

Query: 697 CSCGDYW 703
           CSCGDYW
Sbjct: 654 CSCGDYW 660



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/227 (28%), Positives = 119/227 (52%), Gaps = 11/227 (4%)

Query: 231 SRTFATMIRASAGLEL----------ISVGKQLHSCALKMGFGD-NVFVSCALIDMYSKC 279
           SR FAT  + S   +L          I+  K+LH   L   +   N  V   L+ +Y+ C
Sbjct: 8   SRYFATARQLSFTEDLCNRILDQYPDINTLKKLHGKVLNDQYLRWNPSVGIKLMRVYAAC 67

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           G    A+ +FDE+++K  V +N +I  Y  +   ++AL +Y  M   G   D +T+  ++
Sbjct: 68  GEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVL 127

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
           +  +R  SL    Q H  +++ G  L++   + L+  Y K   +++A+ V D++ C++V+
Sbjct: 128 KASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVV 187

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           SWN++++ Y  +GR  +A+EL  +M    ++PN  T  ++L A + +
Sbjct: 188 SWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNT 234


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/511 (37%), Positives = 302/511 (59%), Gaps = 3/511 (0%)

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC-GSRTFATMIRASAGLELISVGKQL 253
           N   CN +I   +D   +L +  +F  L  +FS    S TF  +++A+A L    VGK +
Sbjct: 53  NSQQCNSMIRTYLDLNKHLNSLYIFA-LMHKFSILPDSSTFPAVLKATAQLCDTGVGKMI 111

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           H   ++MGF  +V+ S AL+ +Y  C SI DA  +FDEM E+  V WN +I GY  +   
Sbjct: 112 HGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKF 171

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
            +A+D +  M   G +    T  +++  C+ L +    K  H  +  +   L++   +AL
Sbjct: 172 VKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTAL 231

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           +D Y+K G + +   VF+++  KNV +WN LI+GY  +G+G+ A++ F +ML+   +P+ 
Sbjct: 232 IDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDE 291

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
           VTFL VL AC   GL   G   F SM +   ++PR  HY CM++LLGR GLL+EA  LI+
Sbjct: 292 VTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQ 351

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
               +    +W ALL ACRV+GN +LG++  ++L  +EP    NYV+L NIY+   +  E
Sbjct: 352 SMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAE 411

Query: 554 AAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGY 613
             ++   +  +G+R +P CS IE+    + F++ +    + + IY+++D ++ ++ ++GY
Sbjct: 412 VGKLRGMMNLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGY 471

Query: 614 VPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKL 672
           V      L D++ E+++  + YHSEKLA+AFGL+N+     L+IV++ RIC DCH   K+
Sbjct: 472 VTGTDMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKV 531

Query: 673 IAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +++V  R IVVRD +RFHHF +G CSC DYW
Sbjct: 532 LSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 153/325 (47%), Gaps = 26/325 (8%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           SST+ A++ A   L      K +   ++  GF  D+Y    ++ ++  C  + DA +LFD
Sbjct: 89  SSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFD 148

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
           EMPERN V+ N +I G   +  +++A   F  +  + +    RT   ++ A + L   + 
Sbjct: 149 EMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQ 208

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           GK +H          NVFV  ALIDMY+KCG++ + + VF+E+ EK    WN +I+GYA+
Sbjct: 209 GKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAM 268

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG------- 362
           +G  + AL  +  M     K D  TF  ++  C            H GLV  G       
Sbjct: 269 NGQGDAALQAFSRMLMENFKPDEVTFLGVLCAC-----------CHQGLVTEGRWQFMSM 317

Query: 363 ---FGLD--IVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEE 416
              FGL   I     +VD   + G +E+A  +   M +  + I W AL+     HG  + 
Sbjct: 318 KQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKL 377

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLS 441
              + ++++   + PN+     +LS
Sbjct: 378 GEYIIKRLI--ELEPNNGENYVLLS 400



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/234 (19%), Positives = 107/234 (45%), Gaps = 3/234 (1%)

Query: 83  SSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIG 142
           S L D   ++ +    + I     N+++ +A++ F  +  +G       T   ++SAC  
Sbjct: 144 SQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGA-QPSERTVVVVLSACSH 202

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           L +  + K +  ++       ++++   ++ M+ +CG + +  ++F+E+ E+N+ + N++
Sbjct: 203 LGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVL 262

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK-QLHSCALKMG 261
           I+G   +G    A   F  +  E       TF  ++ A     L++ G+ Q  S   + G
Sbjct: 263 ISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFG 322

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSE 314
               +     ++D+  + G +E+A  +   MS E   + W  ++    +HG ++
Sbjct: 323 LQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTK 376


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 189/524 (36%), Positives = 303/524 (57%), Gaps = 38/524 (7%)

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           +AFLL++ L     +    TF++++++ +       GK +H+  LK G G + +V+  L+
Sbjct: 113 QAFLLYVQLLSSEINPNEFTFSSLLKSCS----TKSGKLIHTHVLKFGLGIDPYVATGLV 168

Query: 274 DMYSKCGSIEDAQGVFDEMSEKT-------------------------------TVGWNT 302
           D+Y+K G +  AQ VFD M E++                                V WN 
Sbjct: 169 DVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNV 228

Query: 303 IIAGYALHGYSEEALDLYYEMRDSG-VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           +I GYA HG+  +AL L+ ++   G  K D  T    +  C+++ +LE  +  H  +   
Sbjct: 229 MIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSS 288

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
              L++   + L+D YSK G +E+A  VF+    K++++WNA+IAGY  HG  ++A+ LF
Sbjct: 289 RIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLF 348

Query: 422 EQML-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
            +M  + G++P  +TF+  L AC+ +GL   G  IF+SM +++ IKP+  HY C++ LLG
Sbjct: 349 NEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLG 408

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540
           R G L  A+  I+         +W+++L +C+++G+  LGK  AE L G+  +    YV+
Sbjct: 409 RAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVL 468

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRK 600
           L NIY S G  +  A+V   ++ KG+   P  S IE++ + H F +GD+ H ++KEIY  
Sbjct: 469 LSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTM 528

Query: 601 VDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQS 659
           + ++   I  HGYVP   T+L D++E E ++ L  HSE+LA+A+GLI+T   +PL+I ++
Sbjct: 529 LRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKN 588

Query: 660 HRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            R+C DCH   KLI+ +TGR+IV+RD +RFHHF DG CSCGD+W
Sbjct: 589 LRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/327 (27%), Positives = 148/327 (45%), Gaps = 61/327 (18%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+ +L+ +C    S +  K + +++L  G   D Y+   ++ ++ + G ++ A+++FD M
Sbjct: 132 TFSSLLKSC----STKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRM 187

Query: 192 PERNLVSC-------------------------------NMIIAGMIDSGDYLEAFLLFL 220
           PER+LVS                                N++I G    G   +A +LF 
Sbjct: 188 PERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQ 247

Query: 221 DLWEEFSDCGSR-TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
            L  E        T    + A + +  +  G+ +H          NV V   LIDMYSKC
Sbjct: 248 KLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKC 307

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSMI 338
           GS+E+A  VF++   K  V WN +IAGYA+HGYS++AL L+ EM+  +G++    TF   
Sbjct: 308 GSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGT 367

Query: 339 IRICTRLASLEHAKQAHAGLVRHG----------FGL--DIVANSALVDFYSKWGRIEDA 386
           ++ C           AHAGLV  G          +G+   I     LV    + G+++ A
Sbjct: 368 LQAC-----------AHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRA 416

Query: 387 RHVFDKM-LCKNVISWNALIAGYGNHG 412
                 M +  + + W++++     HG
Sbjct: 417 YETIKNMNMDADSVLWSSVLGSCKLHG 443



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 99/206 (48%), Gaps = 9/206 (4%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +AL LF+ L  EG       T  A +SAC  + ++   + +  ++ S+    ++ +   +
Sbjct: 241 DALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGL 300

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE----EFS 227
           + M+ +CG + +A  +F++ P +++V+ N +IAG    G   +A  LF ++      + +
Sbjct: 301 IDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPT 360

Query: 228 DCGSRTFATMIRASAGLELISVGKQL-HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
           D    TF   ++A A   L++ G ++  S   + G    +     L+ +  + G ++ A 
Sbjct: 361 DI---TFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAY 417

Query: 287 GVFDEMS-EKTTVGWNTIIAGYALHG 311
                M+ +  +V W++++    LHG
Sbjct: 418 ETIKNMNMDADSVLWSSVLGSCKLHG 443



 Score = 43.9 bits (102), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 4/105 (3%)

Query: 347 SLEHAKQAHAGLVRHGFGLDI---VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
           S++   Q HA ++RH   L     V N  L   Y+  G+I  +  +F + +  ++  + A
Sbjct: 41  SVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTA 100

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS-RSG 447
            I     +G  ++A  L+ Q+L + + PN  TF ++L +CS +SG
Sbjct: 101 AINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKSG 145


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/544 (37%), Positives = 319/544 (58%), Gaps = 10/544 (1%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           EPD +  N +L  +VR      A+  FD MP ++  S N +I G    G+  +A  LF  
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYS 180

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           + E+       ++  MI  S  +E   + K  H    K+     V    A+I  Y K   
Sbjct: 181 MMEK----NEVSWNAMI--SGYIECGDLEKASH--FFKVAPVRGVVAWTAMITGYMKAKK 232

Query: 282 IEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           +E A+ +F +M+  K  V WN +I+GY  +   E+ L L+  M + G++ +    S  + 
Sbjct: 233 VELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALL 292

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C+ L++L+  +Q H  + +     D+ A ++L+  Y K G + DA  +F+ M  K+V++
Sbjct: 293 GCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVA 352

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           WNA+I+GY  HG  ++A+ LF +M+ N +RP+ +TF+AVL AC+ +GL   G   F+SM 
Sbjct: 353 WNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMV 412

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
           RD+K++P+  HY CM++LLGR G L+EA  LIR  PF+    ++  LL ACRV+ N+EL 
Sbjct: 413 RDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELA 472

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
           +FAAEKL  +  +  + YV L NIY S  + ++ A V + ++   +  +P  SWIE++ +
Sbjct: 473 EFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNK 532

Query: 581 PHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKL 639
            H F S D+ H +   I++K+  +  ++   GY PE +  L +V +EQ++++L +HSEKL
Sbjct: 533 VHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKL 592

Query: 640 AVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSC 699
           AVAFG I     + +Q+ ++ RIC DCH AIK I+ +  REI+VRD +RFHHFKDG CSC
Sbjct: 593 AVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSC 652

Query: 700 GDYW 703
           GDYW
Sbjct: 653 GDYW 656



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 1/172 (0%)

Query: 79  ELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALIS 138
           EL E+   D  + K      + I   V N R  + L+LF  +  E G    SS   + + 
Sbjct: 234 ELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAM-LEEGIRPNSSGLSSALL 292

Query: 139 ACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVS 198
            C  L +++  +++   +  +    D+     ++ M+ +CG + DA +LF+ M ++++V+
Sbjct: 293 GCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVA 352

Query: 199 CNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
            N +I+G    G+  +A  LF ++ +        TF  ++ A     L+++G
Sbjct: 353 WNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIG 404



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 107/237 (45%), Gaps = 19/237 (8%)

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
           F  + II  C R   ++ A +   G+        I  NS L+       R+ +A  +FD+
Sbjct: 62  FPLNKIIARCVRSGDIDGALRVFHGMRAKN---TITWNSLLIGISKDPSRMMEAHQLFDE 118

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           +   +  S+N +++ Y  +   E+A   F++M       +  ++  +++  +R G  E+ 
Sbjct: 119 IPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFK----DAASWNTMITGYARRGEMEKA 174

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACR 512
            E+F SM   +++   AM  +  IE     G L++A    + AP +     W A++T   
Sbjct: 175 RELFYSMMEKNEVSWNAM-ISGYIEC----GDLEKASHFFKVAPVRGVV-AWTAMITGYM 228

Query: 513 VNGNLELGKFAAEKLY-GMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
               +EL    AE ++  M   K L  +  +++ Y  + + ++  ++ R +  +G+R
Sbjct: 229 KAKKVEL----AEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIR 281


>gi|15231831|ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14330
 gi|332641981|gb|AEE75502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/598 (31%), Positives = 348/598 (58%), Gaps = 6/598 (1%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST-GFEPDLYMRNR 170
           EA+ L E              Y  L+ ACI  +S+    ++ S +L+      +  + ++
Sbjct: 113 EAVTLIENSSSSPSNLSTPEAYTDLLHACISAKSLHHGIKICSLILNNPSLRHNPKLLSK 172

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA---GMIDSGDYLEAFLLFLDLWEEFS 227
           ++ +   C  +  AR++FD++ + +L++  +  A   G   +G   +A ++++D+   F 
Sbjct: 173 LITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFI 232

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
           + G+ + +  ++A   L+ + VG+ +H+  +K     +  V   L+ +Y + G  +DA+ 
Sbjct: 233 EPGNFSISVALKACVDLKDLRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARK 292

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
           VFD MSE+  V WN++I+  +      E  +L+ +M++  +     T + I+  C+R+A+
Sbjct: 293 VFDGMSERNVVTWNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLTTILPACSRVAA 352

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAG 407
           L   K+ HA +++     D+   ++L+D Y K G +E +R VFD ML K++ SWN ++  
Sbjct: 353 LLTGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNC 412

Query: 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467
           Y  +G  EE + LFE M+ +G+ P+ +TF+A+LS CS +GL+E G  +F+ M  + ++ P
Sbjct: 413 YAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSP 472

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
              HYAC++++LGR G + EA  +I   PFK + ++W +LL +CR++GN+ +G+ AA++L
Sbjct: 473 ALEHYACLVDILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKEL 532

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
           + +EP    NYV++ NIY  +       ++   ++++G++    CSW++VK +  +F++G
Sbjct: 533 FVLEPHNPGNYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWVQVKDKIQIFVAG 592

Query: 588 DQSHVQTKEIYRKVDRMMLE-ISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGL 645
                +  + Y+KV   + E I K GY P    +L DVDE+ +   +  HSE+LA  + L
Sbjct: 593 GGYEFRNSDEYKKVWTELQEAIEKSGYSPNTSVVLHDVDEETKANWVCGHSERLATTYSL 652

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           I+T +  P++I ++ R+C DCH+ +K+++ VT R IV+RD  RFHHF DG+CSC DYW
Sbjct: 653 IHTGEGVPIRITKNLRVCADCHSWMKIVSQVTRRVIVLRDTKRFHHFVDGICSCKDYW 710


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 212/598 (35%), Positives = 339/598 (56%), Gaps = 22/598 (3%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   +K +      +   V N R  EA  LF        +DV S  ++AL+S  +    +
Sbjct: 155 DLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNS---RTEWDVIS--WNALMSGYVQWGKM 209

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
            E + +F  M       D+   N ++  + R G M++ARRLFD  P R++ +   +++G 
Sbjct: 210 SEARELFDRMPGR----DVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGY 265

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
             +G   EA  +F    +   +  + ++  M+ A     ++   K+L      M    NV
Sbjct: 266 AQNGMLEEARRVF----DAMPERNAVSWNAMVAAYIQRRMMDEAKEL----FNMMPCRNV 317

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326
                ++  Y++ G +E+A+ VFD M +K  V W  ++A Y+  G SEE L L+ EM   
Sbjct: 318 ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRC 377

Query: 327 GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDA 386
           G  ++   F+ ++  C  +A+LE   Q H  L+R G+G+     +AL+  Y K G +EDA
Sbjct: 378 GEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDA 437

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           R+ F++M  ++V+SWN +IAGY  HG G+EA+E+F+ M     +P+ +T + VL+ACS S
Sbjct: 438 RNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHS 497

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
           GL E+G   F SM  D  +  +  HY CMI+LLGR G L EA  L++  PF+    MW A
Sbjct: 498 GLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGA 557

Query: 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           LL A R++ N ELG+ AAEK++ +EPE    YV+L NIY SSGK ++A ++   +  +G+
Sbjct: 558 LLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMMEERGV 617

Query: 567 RMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE 626
           + +P  SWIEV+ + H F +GD  H + ++IY  ++ + + + K GYV     +L DV+E
Sbjct: 618 KKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVLHDVEE 677

Query: 627 QE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA----IKLIAMVTGR 679
           +E + +L YHSEKLAVA+G++N     P++++++ R+C DCHNA    I+L+  V+GR
Sbjct: 678 EEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKAWIELMLKVSGR 735



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 185/406 (45%), Gaps = 62/406 (15%)

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            EP++   N+ +  H+R G + DA RLF  MP R+  + N ++AG   +G    A     
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLA----- 88

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
                         A++ RA    +  S    LH+ A+                      
Sbjct: 89  --------------ASLFRAIPRPDNYSYNTLLHALAVS--------------------S 114

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           S+ DA+G+FDEM  + +V +N +I+ +A HG    A   +    D   + D  +++ ++ 
Sbjct: 115 SLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYF----DLAPEKDAVSWNGMLA 170

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
              R   +E A+    GL       D+++ +AL+  Y +WG++ +AR +FD+M  ++V+S
Sbjct: 171 AYVRNGRVEEAR----GLFNSRTEWDVISWNALMSGYVQWGKMSEARELFDRMPGRDVVS 226

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           WN +++GY   G   EA  LF+   +  +     T+ AV+S  +++G+ E    +F +M 
Sbjct: 227 WNIMVSGYARRGDMVEARRLFDAAPVRDV----FTWTAVVSGYAQNGMLEEARRVFDAMP 282

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
             +     A+ +  M+    +  ++DEA  L    P +   + W  +LT     G LE  
Sbjct: 283 ERN-----AVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVAS-WNTMLTGYAQAGMLE-- 334

Query: 521 KFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565
              A+ ++   P+K + ++  +L  Y+  G  +E  ++   + R G
Sbjct: 335 --EAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCG 378


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 211/594 (35%), Positives = 326/594 (54%), Gaps = 38/594 (6%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGF-EPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           Y  L+S C G    R + R+ + ++++G       + + ++  H   G    A  L+   
Sbjct: 20  YVELLSRCSGGADARPIARIQAALVTSGLLRRSAELHDALIRAHASSGRPQAALPLY--- 76

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA---GLE--- 245
                   ++I AG+  +   L + L  L L       G+R  A  + A A   GL    
Sbjct: 77  -------AHLIRAGLFPTPHTLPSLLKSLALSPAVP--GARRLALAVHAHAVRLGLAGFL 127

Query: 246 -----LISVGKQL------HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE 294
                LI V   L          L+     +      LI  +++ G + DA+ +FDEM E
Sbjct: 128 LVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRVADARSLFDEMPE 187

Query: 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
           +  V W+ ++ GY   G   EAL ++ +M+  GV+ D      ++  C +L +LE  K  
Sbjct: 188 RNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAACAQLGALEQGKWV 247

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414
           H  L  +   + +   +ALVD Y+K G ++    VF+ M  KNV++W  +I G   HGRG
Sbjct: 248 HGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRG 307

Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474
            +++ LF QM  +G++P+ + F+  L AC+ +GL ++G E+F SM  ++ IKP+  HY C
Sbjct: 308 SDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGC 367

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534
           M++LL R GLL EA  ++   P K    +W AL+  CR + N+EL ++  +    +EP+K
Sbjct: 368 MVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVIKHWIELEPDK 427

Query: 535 LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQT 594
              YV+L NIY++SG+   A E+   +R KG+   P CS +E+K   H F+ GD SH + 
Sbjct: 428 SGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVIHQFIVGDLSHPRI 487

Query: 595 KEIYRK---VD-RMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTS 649
           K+I  K   +D R+ LE    GYVP++K +L D++E+E +  LS HSEKLA+AF LI+T 
Sbjct: 488 KDILTKWYEIDSRIRLE---EGYVPDKKEVLLDIEEEEMESALSRHSEKLAIAFALISTE 544

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           D+ P++IV++ R+C DCH+  KLI+ V GREI+VRD +RFH FKDG CSC DYW
Sbjct: 545 DYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFHLFKDGTCSCKDYW 598



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/208 (19%), Positives = 94/208 (45%), Gaps = 3/208 (1%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           REAL +F  ++ +G      +    +++AC  L ++ + K V  Y+ +      +++   
Sbjct: 207 REALGVFSQMQAQG-VRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTA 265

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ M+ +CG +     +F+ M ++N+++   +I G+   G   ++  LF  +        
Sbjct: 266 LVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPD 325

Query: 231 SRTFATMIRASAGLELISVGKQL-HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              F   + A     L+  G++L +S     G    +     ++D+ ++ G + +A+ + 
Sbjct: 326 DIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMV 385

Query: 290 DEMSEKT-TVGWNTIIAGYALHGYSEEA 316
           ++M  K   + W  ++AG   H   E A
Sbjct: 386 EKMPMKPDALIWGALMAGCRFHKNVELA 413


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/597 (35%), Positives = 336/597 (56%), Gaps = 14/597 (2%)

Query: 117 FEILE--FEGGFDVGSSTYDAL--ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           F++L     GG DV +     L  +  C     +  +K +  Y L   F  +  + N  +
Sbjct: 128 FDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFV 187

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG-- 230
             + +CG +  A+R+F  +  + + S N +I G   S D      L LD   +    G  
Sbjct: 188 ASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPR----LSLDAHLQMKISGLL 243

Query: 231 --SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
             S T  +++ A + L+ + +GK++H   ++     ++FV  +++ +Y  CG +   Q +
Sbjct: 244 PDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQAL 303

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD M +K+ V WNT+I GY  +G+ + AL ++ +M   G+++   +   +   C+ L SL
Sbjct: 304 FDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSL 363

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
              ++AHA  ++H    D     +L+D Y+K G I  +  VF+ +  K+  SWNA+I GY
Sbjct: 364 RLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGY 423

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
           G HG  +EA++LFE+M   G  P+ +TFL VL+AC+ SGL   G      M     +KP 
Sbjct: 424 GIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPN 483

Query: 469 AMHYACMIELLGREGLLDEAFALI-RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
             HYAC+I++LGR G LD+A  ++      +    +W +LL++CR++ NLE+G+  A KL
Sbjct: 484 LKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKL 543

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
           + +EPEK  NYV+L N+Y   GK ++  +V + +    LR    CSWIE+ ++   F+ G
Sbjct: 544 FELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVG 603

Query: 588 DQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLI 646
           ++     +EI      + ++ISK GY P+  ++  D+ E+E+   L  HSEKLA+ +GLI
Sbjct: 604 ERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLI 663

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            TS+ T +++ ++ RIC DCHNA KLI+ V  REIVVRD  RFHHFK+G+CSCGDYW
Sbjct: 664 KTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 720



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 208/444 (46%), Gaps = 7/444 (1%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           +G F    +T   ++  C   R I   K V  + +    + +L + N ++ M+ +CG + 
Sbjct: 35  DGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCIT 94

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR--TFATMIRA 240
           +A+ +F     +N+VS N ++ G    GD    F +   +     D  +   T    +  
Sbjct: 95  NAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPV 154

Query: 241 SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW 300
                 +   K+LH  +LK  F  N  V+ A +  Y+KCGS+  AQ VF  +  KT   W
Sbjct: 155 CFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSW 214

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           N +I G+A       +LD + +M+ SG+  D FT   ++  C++L SL   K+ H  ++R
Sbjct: 215 NALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIR 274

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
           +    D+    +++  Y   G +   + +FD M  K+++SWN +I GY  +G  + A+ +
Sbjct: 275 NWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGV 334

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
           F QM+L G++   ++ + V  ACS       G E   + +  H ++  A     +I++  
Sbjct: 335 FRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA-HAYALKHLLEDDAFIACSLIDMYA 393

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG--NLELGKFAAEKLYGMEPEKLSNY 538
           + G + ++  +  G   K+T + W A++    ++G     +  F   +  G  P+ L+ +
Sbjct: 394 KNGSITQSSKVFNGLKEKSTAS-WNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLT-F 451

Query: 539 VVLLNIYNSSGKLKEAAEVIRTLR 562
           + +L   N SG + E    +  ++
Sbjct: 452 LGVLTACNHSGLIHEGLRYLDQMK 475



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/351 (30%), Positives = 166/351 (47%), Gaps = 20/351 (5%)

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG----SRTFATMIRASAGLELISV 249
           RN VS N +I    D+G   E+FLL  ++ EE  D        T  T++   A    I +
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           GK +H  A+K+     + ++ AL+DMYSKCG I +AQ +F   + K  V WNT++ G++ 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 310 HGYSEEALDLYYEMRDSG--VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
            G +    D+  +M   G  VK D  T    + +C   + L   K+ H   ++  F  + 
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE 180

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
           +  +A V  Y+K G +  A+ VF  +  K V SWNALI G+        +++   QM ++
Sbjct: 181 LVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKIS 240

Query: 428 GMRPNHVTFLAVLSACS-----RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           G+ P+  T  ++LSACS     R G    G+ I   + RD  +      Y  ++ L    
Sbjct: 241 GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFV------YLSVLSLYIHC 294

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNG--NLELGKFAAEKLYGME 531
           G L    AL      K+  + W  ++T    NG  +  LG F    LYG++
Sbjct: 295 GELCTVQALFDAMEDKSLVS-WNTVITGYLQNGFPDRALGVFRQMVLYGIQ 344


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 213/612 (34%), Positives = 346/612 (56%), Gaps = 18/612 (2%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           VLN   + +L LF  +  +G +     T+   + AC  L ++ +  ++  + L  GFE  
Sbjct: 83  VLNGDLKGSLSLFSEMGRQGIYP-NEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMM 141

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           + + N ++ M+ +CG + +A ++F  + +R+L+S N +IAG + +G   +A   F  + E
Sbjct: 142 VEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQE 201

Query: 225 EFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGF--GDNVFVSCALIDMYSK 278
             ++   R    T  ++++A +   +I  GKQ+H   ++ GF    +  ++ +L+D+Y K
Sbjct: 202 --ANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVK 259

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CG +  A+  FD++ EKT + W+++I GYA  G   EA+ L+  +++   ++D F  S I
Sbjct: 260 CGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSI 319

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           I +    A L   KQ  A  V+   GL+    +++VD Y K G +++A   F +M  K+V
Sbjct: 320 IGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDV 379

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           ISW  +I GYG HG G+++V +F +ML + + P+ V +LAVLSACS SG+ + G E+F  
Sbjct: 380 ISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSK 439

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           +   H IKPR  HYAC+++LLGR G L EA  LI   P K    +W  LL+ CRV+G++E
Sbjct: 440 LLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIE 499

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           LGK   + L  ++ +  +NYV++ N+Y  +G   E          KGL+     SW+E++
Sbjct: 500 LGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIE 559

Query: 579 KQPHVFLSGDQSHVQT---KEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSY 634
           ++ H F SG+ SH  T   +E  ++ +R + E  + GYV   K  L D+ DE ++  L  
Sbjct: 560 REVHFFRSGEDSHPLTPVIQETLKEAERRLRE--ELGYVYGLKHELHDIDDESKEENLRA 617

Query: 635 HSEKLAVAFGLIN---TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHH 691
           HSEKLA+   L           +++ ++ R+C DCH  IK ++ +T    VVRDA RFH 
Sbjct: 618 HSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHS 677

Query: 692 FKDGMCSCGDYW 703
           F+DG CSCGDYW
Sbjct: 678 FEDGCCSCGDYW 689



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 124/420 (29%), Positives = 218/420 (51%), Gaps = 15/420 (3%)

Query: 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG 210
           +V  Y+L +G   +L   N ++ M+ +C   + A ++FD MPERN+VS + +++G + +G
Sbjct: 27  QVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNG 86

Query: 211 DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSC 270
           D   +  LF ++  +       TF+T ++A   L  +  G Q+H   LK+GF   V V  
Sbjct: 87  DLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGN 146

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK- 329
           +L+DMYSKCG I +A+ VF  + +++ + WN +IAG+   GY  +ALD +  M+++ +K 
Sbjct: 147 SLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKE 206

Query: 330 -MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA--NSALVDFYSKWGRIEDA 386
             D FT + +++ C+    +   KQ H  LVR GF     A    +LVD Y K G +  A
Sbjct: 207 RPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSA 266

Query: 387 RHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446
           R  FD++  K +ISW++LI GY   G   EA+ LF+++     + +     +++   +  
Sbjct: 267 RKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADF 326

Query: 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506
            L  +G ++ Q+++              ++++  + GL+DEA         K   + W  
Sbjct: 327 ALLRQGKQM-QALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVIS-WTV 384

Query: 507 LLTACRVNGNLELGKFAAEKLYGM-----EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           ++T    +G   LGK +    Y M     EP+++  Y+ +L+  + SG +KE  E+   L
Sbjct: 385 VITGYGKHG---LGKKSVRIFYEMLRHNIEPDEVC-YLAVLSACSHSGMIKEGEELFSKL 440



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/232 (35%), Positives = 130/232 (56%), Gaps = 2/232 (0%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           +   +++R      L   G Q+H   LK G G N+  S  LIDMY KC     A  VFD 
Sbjct: 7   QNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDS 66

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M E+  V W+ +++G+ L+G  + +L L+ EM   G+  + FTFS  ++ C  L +LE  
Sbjct: 67  MPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKG 126

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
            Q H   ++ GF + +   ++LVD YSK GRI +A  VF +++ +++ISWNA+IAG+ + 
Sbjct: 127 LQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHA 186

Query: 412 GRGEEAVELFEQMLLNGM--RPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           G G +A++ F  M    +  RP+  T  ++L ACS +G+   G +I   + R
Sbjct: 187 GYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVR 238


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/511 (37%), Positives = 302/511 (59%), Gaps = 3/511 (0%)

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC-GSRTFATMIRASAGLELISVGKQL 253
           N   CN +I   +D   +L +  +F  L  +FS    S TF  +++A+A L    VGK +
Sbjct: 53  NSQQCNSMIRTYLDLNKHLNSLYIFA-LMHKFSILPDSSTFPAVLKATAQLCDTGVGKMI 111

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           H   ++MGF  +V+ S AL+ +Y  C SI DA  +FDEM E+  V WN +I GY  +   
Sbjct: 112 HGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHNRKF 171

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373
            +A+D +  M   G +    T  +++  C+ L +    K  H  +  +   L++   +AL
Sbjct: 172 VKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTAL 231

Query: 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433
           +D Y+K G + +   VF+++  KNV +WN LI+GY  +G+G+ A++ F +ML+   +P+ 
Sbjct: 232 IDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDE 291

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493
           VTFL VL AC   GL   G   F SM +   ++PR  HY CM++LLGR GLL+EA  LI+
Sbjct: 292 VTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQ 351

Query: 494 GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
               +    +W ALL ACRV+GN +LG++  ++L  +EP    NYV+L NIY+   +  E
Sbjct: 352 SMSIEPDPIIWRALLCACRVHGNTKLGEYIIKRLIELEPNNGENYVLLSNIYSRERRWAE 411

Query: 554 AAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGY 613
             ++   +  +G+R +P CS IE+    + F++ +    + + IY+++D ++ ++ ++GY
Sbjct: 412 VGKLRGMMSLRGIRKVPGCSSIEINNVVYEFVASNDRKPEFEAIYKQLDNLIKKLKENGY 471

Query: 614 VPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKL 672
           V      L D++ E+++  + YHSEKLA+AFGL+N+     L+IV++ RIC DCH   K+
Sbjct: 472 VTGTDMALYDIEKEEKEHSVMYHSEKLALAFGLLNSPLDCTLRIVKNLRICLDCHEFFKV 531

Query: 673 IAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +++V  R IVVRD +RFHHF +G CSC DYW
Sbjct: 532 LSLVYKRYIVVRDRNRFHHFYEGFCSCRDYW 562



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 153/325 (47%), Gaps = 26/325 (8%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           SST+ A++ A   L      K +   ++  GF  D+Y    ++ ++  C  + DA +LFD
Sbjct: 89  SSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFD 148

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
           EMPERN V+ N +I G   +  +++A   F  +  + +    RT   ++ A + L   + 
Sbjct: 149 EMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQ 208

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           GK +H          NVFV  ALIDMY+KCG++ + + VF+E+ EK    WN +I+GYA+
Sbjct: 209 GKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAM 268

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG------- 362
           +G  + AL  +  M     K D  TF  ++  C            H GLV  G       
Sbjct: 269 NGQGDAALQAFSRMLMENFKPDEVTFLGVLCAC-----------CHQGLVTEGRWQFMSM 317

Query: 363 ---FGLD--IVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEE 416
              FGL   I     +VD   + G +E+A  +   M +  + I W AL+     HG  + 
Sbjct: 318 KQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKL 377

Query: 417 AVELFEQMLLNGMRPNHVTFLAVLS 441
              + ++++   + PN+     +LS
Sbjct: 378 GEYIIKRLI--ELEPNNGENYVLLS 400



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/234 (19%), Positives = 107/234 (45%), Gaps = 3/234 (1%)

Query: 83  SSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIG 142
           S L D   ++ +    + I     N+++ +A++ F  +  +G       T   ++SAC  
Sbjct: 144 SQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGA-QPSERTVVVVLSACSH 202

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           L +  + K +  ++       ++++   ++ M+ +CG + +  ++F+E+ E+N+ + N++
Sbjct: 203 LGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVL 262

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK-QLHSCALKMG 261
           I+G   +G    A   F  +  E       TF  ++ A     L++ G+ Q  S   + G
Sbjct: 263 ISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFG 322

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSE 314
               +     ++D+  + G +E+A  +   MS E   + W  ++    +HG ++
Sbjct: 323 LQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTK 376


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/605 (33%), Positives = 343/605 (56%), Gaps = 4/605 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +  LV N+ YR+AL  F  ++         S  + LI+A     ++   K V +Y +  G
Sbjct: 321 LSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLN-LIAASGRSGNLLNGKEVHAYAIRNG 379

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            + ++ + N ++ M+ +C  +      F+ M E++L+S   IIAG   +  +LEA  LF 
Sbjct: 380 LDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFR 439

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +  +  D       +++RA +GL+  +  +++H    K    D + +  A++++Y + G
Sbjct: 440 KVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLAD-IMLQNAIVNVYGEVG 498

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
             + A+  F+ +  K  V W ++I     +G   EAL+L+Y ++ + ++ D       + 
Sbjct: 499 HRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALS 558

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
               L+SL+  K+ H  L+R GF L+    S+LVD Y+  G +E++R +F  +  +++I 
Sbjct: 559 ATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLIL 618

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           W ++I   G HG G EA+ LF++M    + P+H+TFLA+L ACS SGL   G   F+ M 
Sbjct: 619 WTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMK 678

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
             ++++P   HYACM++LL R   L+EA+  +R  P K +  +W ALL AC ++ N ELG
Sbjct: 679 YGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELG 738

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
           + AA++L   + +    Y ++ NI+ + G+  +  EV   ++  GL+  P CSWIEV  +
Sbjct: 739 ELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNK 798

Query: 581 PHVFLSGDQSHVQTKEIYRKVDRMM-LEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEK 638
            H F++ D+SH QT +IY K+ +   L   K GY+ + K +  +V E+E+  + Y HSE+
Sbjct: 799 IHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEEKTQMLYRHSER 858

Query: 639 LAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCS 698
           LA+ +GL+ T   T ++I ++ RIC DCH   K+ + V+ R +VVRDA+RFHHF+ G+CS
Sbjct: 859 LALGYGLLVTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDANRFHHFERGLCS 918

Query: 699 CGDYW 703
           CGD+W
Sbjct: 919 CGDFW 923



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 182/333 (54%), Gaps = 4/333 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            +  L+  C+ ++++ + +++ + +L +      ++  ++L M+ +CG + DA ++FDEM
Sbjct: 48  AHSLLLDLCVAVKALPQGQQLHARLLKSHLSA--FLATKLLHMYEKCGSLKDAVKVFDEM 105

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            ER + + N ++   + SG YLEA  L+ ++        + TF ++++A   L    +G 
Sbjct: 106 TERTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGA 165

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE--MSEKTTVGWNTIIAGYAL 309
           ++H  A+K GFG+ VFV  ALI MY KCG +  A+ +FD   M ++ TV WN+II+ +  
Sbjct: 166 EIHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVT 225

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G   EAL L+  M++ GV  + +TF   ++     + ++     H   ++     D+  
Sbjct: 226 EGKCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYV 285

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            +AL+  Y+K GR+EDA  VF  MLC++ +SWN L++G   +    +A+  F  M  +  
Sbjct: 286 ANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQ 345

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           +P+ V+ L +++A  RSG    G E+     R+
Sbjct: 346 KPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRN 378



 Score =  173 bits (438), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 139/475 (29%), Positives = 233/475 (49%), Gaps = 25/475 (5%)

Query: 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEP 163
            V + +Y EA+EL++ +   G   + + T+ +++ AC  L   R    +    +  GF  
Sbjct: 120 FVSSGKYLEAIELYKEMRVLG-VAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGE 178

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDE--MPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
            +++ N ++ M+ +CG +  AR LFD   M + + VS N II+  +  G  LEA  LF  
Sbjct: 179 FVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRR 238

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           + E      + TF   ++       + +G  +H  ALK     +V+V+ ALI MY+KCG 
Sbjct: 239 MQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGR 298

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           +EDA+ VF  M  +  V WNT+++G   +    +AL+ + +M++S  K D  +   +I  
Sbjct: 299 MEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAA 358

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
             R  +L + K+ HA  +R+G   ++   + L+D Y+K   ++   + F+ M  K++ISW
Sbjct: 359 SGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISW 418

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW--EIFQSM 459
             +IAGY  +    EA+ LF ++ + GM  + +   +VL AC  SGL  R +  EI   +
Sbjct: 419 TTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRAC--SGLKSRNFIREIHGYV 476

Query: 460 -SRDHKIKPRAMHYACMIELLGREGLLD---EAFALIRGAPFKTTKNMWAALLTACRVNG 515
             RD       M    ++ + G  G  D    AF  IR     +    W +++T C  NG
Sbjct: 477 FKRD---LADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVS----WTSMITCCVHNG 529

Query: 516 ----NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
                LEL  F + K   ++P+ ++    L    N S  LK+  E+   L RKG 
Sbjct: 530 LPVEALEL--FYSLKQTNIQPDSIAIISALSATANLS-SLKKGKEIHGFLIRKGF 581



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 159/338 (47%), Gaps = 43/338 (12%)

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G+QLH+  LK     + F++  L+ MY KCGS++DA  VFDEM+E+T   WN ++  +  
Sbjct: 65  GQQLHARLLKSHL--SAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVS 122

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G   EA++LY EMR  GV +D  TF  +++ C  L       + H   V+ GFG  +  
Sbjct: 123 SGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFV 182

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
            +AL+  Y K G +  AR +FD ++   ++ +SWN++I+ +   G+  EA+ LF +M   
Sbjct: 183 CNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEV 242

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA------CMIELLGR 481
           G+  N  TF+A L         + G  I       H    ++ H+A       +I +  +
Sbjct: 243 GVASNTYTFVAALQGVEDPSFVKLGMGI-------HGAALKSNHFADVYVANALIAMYAK 295

Query: 482 EGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY------------- 528
            G +++A            + ++A++L    V+ N  L      +LY             
Sbjct: 296 CGRMEDA------------ERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNS 343

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
             +P+++S  + L+     SG L    EV     R GL
Sbjct: 344 AQKPDQVS-VLNLIAASGRSGNLLNGKEVHAYAIRNGL 380


>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
 gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
          Length = 583

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/476 (40%), Positives = 299/476 (62%), Gaps = 3/476 (0%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           S  F ++ +A A L  +  G  +H+ A+ +GFG + FV  AL+ +YSKCG ++ A+ +FD
Sbjct: 108 SFAFTSVAKACADLSALRAGMGVHAHAVLLGFGSDRFVQTALVVLYSKCGKLDVARKLFD 167

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            + +++ V WN +I+GY  +G +  A+++Y EMR +G   D  TF   +  C +  +L+ 
Sbjct: 168 AIRDRSVVAWNAMISGYEQNGLAGRAIEVYREMRVAGEAPDSATFVATLSACAQAGALDL 227

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
             +    +V     +++V  +ALV+ Y++ G +  AR  FD +  +NV++W ++IAGYG 
Sbjct: 228 GHEVERLIVSERMEMNVVLGAALVNMYARCGLVNKAREWFDMLQERNVVTWTSMIAGYGM 287

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           HG G EAV+LF+ M   G  PN VTF+AVLSAC+ +GL   G + F SM   + + PRA 
Sbjct: 288 HGHGGEAVKLFDLMRQQGPPPNDVTFVAVLSACAHAGLVSDGRDAFASMKSVYGLVPRAE 347

Query: 471 HYACMIELLGREGLLDEAFALIRGA-PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
           HY  M+++ GR GLLD+A   I  + P +    +W A+L AC+++ N  LG   AE+L  
Sbjct: 348 HYCSMVDMYGRAGLLDDAMQFIHDSIPGEPGPEVWTAMLGACKMHKNFSLGVEVAERLIA 407

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           +EPE  S+ V+L NIY  SGK+    +V  T+ ++ L+     S IE+    HVF  G++
Sbjct: 408 LEPENPSHRVLLSNIYALSGKMNHVEKVRNTMIKRRLKKPIGYSLIEIGGVAHVFRMGEK 467

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINT 648
           SH +T EIY+ +++++  I+  GY+PE  ++L +++E+E+   L YH EKLAVAFGL+ T
Sbjct: 468 SHPKTPEIYQYLEKLIHRITDAGYMPETDSVLHELEEEEREFALRYHGEKLAVAFGLMMT 527

Query: 649 SDWT-PLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           S  T P++I+++ RIC DCH AIK ++ V  REI+VRD  RFHHFK G CSC +YW
Sbjct: 528 SGCTAPIRIIKNLRICGDCHLAIKYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 583



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 161/330 (48%), Gaps = 26/330 (7%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S  + ++  AC  L ++R    V ++ +  GF  D +++  +++++ +CG +  AR+LFD
Sbjct: 108 SFAFTSVAKACADLSALRAGMGVHAHAVLLGFGSDRFVQTALVVLYSKCGKLDVARKLFD 167

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
            + +R++V+ N +I+G   +G    A  ++ ++        S TF   + A A    + +
Sbjct: 168 AIRDRSVVAWNAMISGYEQNGLAGRAIEVYREMRVAGEAPDSATFVATLSACAQAGALDL 227

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G ++    +      NV +  AL++MY++CG +  A+  FD + E+  V W ++IAGY +
Sbjct: 228 GHEVERLIVSERMEMNVVLGAALVNMYARCGLVNKAREWFDMLQERNVVTWTSMIAGYGM 287

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG------- 362
           HG+  EA+ L+  MR  G   +  TF  ++  C           AHAGLV  G       
Sbjct: 288 HGHGGEAVKLFDLMRQQGPPPNDVTFVAVLSAC-----------AHAGLVSDGRDAFASM 336

Query: 363 ---FGLDIVANS--ALVDFYSKWGRIEDA-RHVFDKMLCKNVIS-WNALIAGYGNHGRGE 415
              +GL   A    ++VD Y + G ++DA + + D +  +     W A++     H    
Sbjct: 337 KSVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIHDSIPGEPGPEVWTAMLGACKMHKNFS 396

Query: 416 EAVELFEQML-LNGMRPNHVTFLAVLSACS 444
             VE+ E+++ L    P+H   L+ + A S
Sbjct: 397 LGVEVAERLIALEPENPSHRVLLSNIYALS 426


>gi|28876027|gb|AAO60036.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 704

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 200/585 (34%), Positives = 331/585 (56%), Gaps = 35/585 (5%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMH----------------- 175
           +  L  AC   R++R ++++ ++  ++G   D +  N ++L +                 
Sbjct: 113 FSHLFRAC---RALRPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERIP 169

Query: 176 --------------VRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
                         ++ G +  AR+LFDEMPERN+ + N ++AG+ + G   E+   FLD
Sbjct: 170 RRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLD 229

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           +  E          ++ R  AGL  +  G+Q+H+  ++ G   ++ V  +L  MY +CG 
Sbjct: 230 MRREGMHPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGC 289

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           +++ + V   +   + V  NTIIAG   +G SE AL+ +  MR  GV  D  TF   I  
Sbjct: 290 LQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAISS 349

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401
           C+ LA+L   +Q H  +++ G    +   + LV  YS+ G + D+  VF      +    
Sbjct: 350 CSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLL 409

Query: 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           +A+I+ YG HG G++A+ELF+QM+  G  P+ VTFLA+L ACS SGL E G + F+ M++
Sbjct: 410 SAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVTFLALLYACSHSGLKEEGMDCFELMTK 469

Query: 462 DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521
            + ++P   HY C+++LLGR G LDEA ALI   P      +W  LL+AC+   N ++ +
Sbjct: 470 TYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSMPLTPDGVIWKTLLSACKTQKNFDMAE 529

Query: 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
             A+++  ++P   ++YV+L NI  +S +  + +EV + +R   +R  P  SW+E+K   
Sbjct: 530 RIAKRVIELDPHDSASYVLLSNIRATSRRWGDVSEVRKAMRDNNVRKEPGVSWVELKGHI 589

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLA 640
           H F +GD+SH + KEI   ++ MM +I + GY P+   +L D++++E+ V LS+HSEKLA
Sbjct: 590 HQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSPDMSMVLHDMEDEEKEVSLSHHSEKLA 649

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRD 685
           +AF  ++  +  P++++++ R+C DCH AIKL++ VTGREIVVRD
Sbjct: 650 IAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMSQVTGREIVVRD 694


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 218/726 (30%), Positives = 373/726 (51%), Gaps = 116/726 (15%)

Query: 89  QMKKPSAGICSQIEKLVLN---KRYREALELFEILEFEGGFDVGSSTYDALISACIGLRS 145
           +M  P A + +  E ++LN   ++ ++ +ELF  ++F       ++T   ++ AC  + +
Sbjct: 193 EMPNPEALLWN--EAIILNLQSEKLQKGVELFRKMQFSF-LKAETATIVRVLQACGKMGA 249

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
           +   K++  Y+   G + D+ + N ++ M+ + G +  ARR+FD M  RN  S N +I+ 
Sbjct: 250 LNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISS 309

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDC------------------------------------ 229
               G   +A+ LF +L  E SD                                     
Sbjct: 310 YAALGFLNDAWSLFYEL--ESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFK 367

Query: 230 -GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC--------- 279
             S +  ++++A + L  +++GK+ H   L+ GF  +V+V  +LIDMY K          
Sbjct: 368 PNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAV 427

Query: 280 ----------------------GSIEDAQGVFDEMSEKTT----VGWNTIIAGYALHGYS 313
                                 G  EDA  + ++M ++      V WN +I+GYA+ G  
Sbjct: 428 FDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCG 487

Query: 314 EEAL-----------------------------------DLYYEMRDSGVKMDHFTFSMI 338
           +EAL                                     + +M+  GV  +  + + +
Sbjct: 488 KEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCL 547

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +R C  L+ L+  K+ H   +R+GF  D+   +AL+D YSK   +++A  VF ++  K +
Sbjct: 548 LRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTL 607

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
            SWN +I G+   G G+EA+ +F +M   G+ P+ +TF A+LSAC  SGL   GW+ F S
Sbjct: 608 ASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDS 667

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M  D++I PR  HY CM++LLGR G LDEA+ LI   P K    +W ALL +CR++ NL+
Sbjct: 668 MITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLK 727

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
             + AA+ L+ +EP   +NY++++N+Y+   + ++   +   +   G+R     SWI++ 
Sbjct: 728 FAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQIN 787

Query: 579 KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSE 637
           ++ HVF S ++ H    +IY ++ +++ E+ K GYVP+   +  ++DE E Q++L  H+E
Sbjct: 788 QRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTE 847

Query: 638 KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
           KLA+ +GLI      P++++++ RIC DCH+A K I++V  RE+ +RD  RFHHF++G C
Sbjct: 848 KLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKC 907

Query: 698 SCGDYW 703
           SC D+W
Sbjct: 908 SCNDFW 913



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/493 (24%), Positives = 219/493 (44%), Gaps = 43/493 (8%)

Query: 114 LELFEILEFEGG-FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           LE+F+ L  +G  FD  S  Y   +  C  +  I     +   ++  GF+ D+Y+R  ++
Sbjct: 118 LEVFKELHGKGVVFD--SEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALM 175

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
             + RC  +  A ++F EMP    +  N  I   + S    +   LF  +   F    + 
Sbjct: 176 NFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETA 235

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T   +++A   +  ++  KQ+H    + G   +V +   LI MYSK G +E A+ VFD M
Sbjct: 236 TIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSM 295

Query: 293 SEKTTVGWNTIIAGYA-----------------------------------LHGYSEEAL 317
             + T  WN++I+ YA                                   LHGY EE L
Sbjct: 296 ENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVL 355

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
           ++   M+  G K +  + + +++  + L  L   K+ H  ++R+GF  D+   ++L+D Y
Sbjct: 356 NILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMY 415

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
            K   +  A+ VFD M  +N+ +WN+L++GY   G  E+A+ L  QM   G++P+ VT+ 
Sbjct: 416 VKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWN 475

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA---FALIRG 494
            ++S  +  G  +    +    ++   + P  + +  +I    + G   ++   FA ++ 
Sbjct: 476 GMISGYAMWGCGKEALAVLHQ-TKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQ 534

Query: 495 APFKTTKNMWAALLTACRVNGNLELGK-FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
                       LL AC     L+ GK      +     E +     L+++Y+ S  LK 
Sbjct: 535 EGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKN 594

Query: 554 AAEVIRTLRRKGL 566
           A +V R ++ K L
Sbjct: 595 AHKVFRRIQNKTL 607


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 194/525 (36%), Positives = 314/525 (59%), Gaps = 12/525 (2%)

Query: 184 ARRLFDEMPERNLVSCNMII---AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA 240
           AR +F  +P  + ++ N II   +    S     +   F  +        + TF  +++A
Sbjct: 41  ARYVFSRIPSPDTIAYNTIIRSHSRFFPS----HSLFYFFSMRSNGIPLDNFTFPFVLKA 96

Query: 241 SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW 300
            + L+   +   LHS  +K G   ++FV  ALI +Y  CGS+E A  VFDEMSE+ +V W
Sbjct: 97  CSRLQ---INLHLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSW 153

Query: 301 NTIIAGYALHGYSEEALDLYYEMR-DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           +T+IA +  +GY+ EALDL+ +M+ +  V  D  T   +I   + L  LE  +   A + 
Sbjct: 154 STVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIG 213

Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVE 419
           R G G+ +   +AL+D +S+ G I+++  VF+KM  +NV++W ALI G G HGR  EA+ 
Sbjct: 214 RLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALA 273

Query: 420 LFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479
           +F  M  +G++P++VTF  VL ACS  GL + GW+IF+S+ + +++ P   HY CM+++L
Sbjct: 274 MFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDIL 333

Query: 480 GREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYV 539
           GR GLL+EA+  +   P K    +W  LL AC  + NL L +    K+  +   +  + V
Sbjct: 334 GRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHNNLGLAEKVKAKISKISSSQNGDLV 393

Query: 540 VLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYR 599
           +L N+Y ++G+  E A +   +R K +   P CS I V +  H F+SGD SH Q+++I +
Sbjct: 394 LLSNVYGAAGRWVEKASIRSKMREKRIGKEPGCSSINVDQTIHEFVSGDNSHPQSEDITK 453

Query: 600 KVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQ 658
            +  ++ ++   GY+ + K +L D++E+E +  LSYHSEKLAVAF +++  D   ++I++
Sbjct: 454 FLSSIIGDLRNRGYMMQTKNVLHDIEEEEREHSLSYHSEKLAVAFAILSMKDKRTIRIMK 513

Query: 659 SHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           + RIC DCH+ +K I++   R+I++RD +RFHHF+ G+CSC DYW
Sbjct: 514 NLRICYDCHSFMKHISVRFERKIIIRDRNRFHHFEKGLCSCHDYW 558



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 99/228 (43%), Gaps = 4/228 (1%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   ++ S    + I   + N    EAL+LFE ++ E        T  ++ISA   L  +
Sbjct: 143 DEMSERDSVSWSTVIASFLNNGYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGDL 202

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
              + V +++   G    + +   ++ M  RCG + ++  +F++M  RN+++   +I G+
Sbjct: 203 ELGRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGL 262

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
              G   EA  +F  + +        TF+ ++ A +   L+  G  +     K+   D +
Sbjct: 263 GVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWDIFESIRKVYRMDPL 322

Query: 267 F--VSCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYALHG 311
                C ++D+  + G + +A    + M  K  ++ W T++     H 
Sbjct: 323 LDHYGC-MVDILGRAGLLNEAYDFVERMPMKPNSIIWRTLLGACVNHN 369


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/603 (33%), Positives = 338/603 (56%), Gaps = 47/603 (7%)

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHV--RCGMMIDARRLFDEMPERNLVSCNMIIA 204
           +EV+++ ++ L T      ++ +R+L ++   +   +  AR +FD +  R+L+  N II 
Sbjct: 30  QEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTIIK 89

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
             +++    +  +LF +L  E+    + T   +I+  A L ++  GKQ+H  ALK+GFG 
Sbjct: 90  CYVENQFSHDGIVLFHELVHEYLP-DNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGS 148

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI--------------------- 303
           +VFV  +L++MYSKCG I+ A+ VFD M +K  V WN++                     
Sbjct: 149 DVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDF 208

Query: 304 ---------------------IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
                                IAGY L+G   +A+ +++ M   G +  H T   ++   
Sbjct: 209 DSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAV 268

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
           + LA L   +  H+ + ++GF LD +  ++L++ Y+K G IE A  VF  +  K V  W 
Sbjct: 269 SGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWT 328

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           A+I G G HG    A+ LF +M   G++PN + F+ VL+AC+ +GL + G + F  M  +
Sbjct: 329 AIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNE 388

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
           +KI+P   HY C++++L R G L+EA   I   P    K +W +LL   R +G +++G++
Sbjct: 389 YKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEY 448

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPH 582
           AA+++  + PE +  Y++L N+Y +SG  ++ + V   + ++G R  P CS +E K   H
Sbjct: 449 AAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLH 508

Query: 583 VFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR--VLSYHSEKLA 640
            F+ GD SH QTKEIY K+  M  ++   G+VP+   +L  ++ ++++   L  HSE+LA
Sbjct: 509 EFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLA 568

Query: 641 VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCG 700
           +AFGLIN     P++I+++ R+C DCH+  KL++ +  REI+VRD  RFHHFK+G CSC 
Sbjct: 569 IAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCM 628

Query: 701 DYW 703
           DYW
Sbjct: 629 DYW 631



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 175/377 (46%), Gaps = 71/377 (18%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I+  V N+   + + LF  L  E  +   + T   +I  C  L  ++E K++    L  G
Sbjct: 88  IKCYVENQFSHDGIVLFHELVHE--YLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIG 145

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER-----------NLVSCNMIIAGMIDS 209
           F  D++++  ++ M+ +CG +  AR++FD M ++           NLVS N +I G + S
Sbjct: 146 FGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKS 205

Query: 210 GDYLEAFLLF--LDLWE---------------EFSDC----------GSR----TFATMI 238
           GD+  A  LF  + +W+               +F D           GSR    T  +++
Sbjct: 206 GDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVL 265

Query: 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV 298
            A +GL ++  G+ +HS   K GF  +  +  +LI+MY+KCG IE A  VF  + +K   
Sbjct: 266 SAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVG 325

Query: 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
            W  II G  +HG +  AL L+ EM  +G+K +   F  ++  C            HAGL
Sbjct: 326 HWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACN-----------HAGL 374

Query: 359 VRHGFG-LDIVAN-----------SALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALI 405
           V  G    D++ N             LVD   + G +E+A++  + M +  N + W +L+
Sbjct: 375 VDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLL 434

Query: 406 AGYGNHGR---GEEAVE 419
            G  NHG+   GE A +
Sbjct: 435 GGSRNHGKIDIGEYAAQ 451



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 106/243 (43%), Gaps = 22/243 (9%)

Query: 338 IIRICTRLASLE--HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED---ARHVFDK 392
           + + C+    +E  HA      +  H F      +S L+  YS   +I D   AR +FD+
Sbjct: 22  LFQTCSAPQEVEQLHAFSLKTAIFNHPF-----VSSRLLALYSD-PKINDLGYARSIFDR 75

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           +  +++I WN +I  Y  +    + + LF + L++   P++ T   V+  C+R G+ + G
Sbjct: 76  IQRRSLIHWNTIIKCYVENQFSHDGIVLFHE-LVHEYLPDNFTLPCVIKGCARLGVVQEG 134

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA-- 510
            +I   ++              ++ +  + G +D A  +  G   K    +W +L+    
Sbjct: 135 KQI-HGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVV-LWNSLIDGNL 192

Query: 511 ----CRVNGNLELGKF--AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
                 +NG ++ G F  A E  Y M    L  + +++  Y  +G+  +A ++   + + 
Sbjct: 193 VSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKL 252

Query: 565 GLR 567
           G R
Sbjct: 253 GSR 255


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 201/574 (35%), Positives = 325/574 (56%), Gaps = 2/574 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+ +L+  C  L   +  K +   ++      DLY+   +L M+  CG +  AR LF+ M
Sbjct: 81  TFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERM 140

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
             RN V    +I+G + +    EA LL+  + E+       T AT++ A A L+ + VG 
Sbjct: 141 GHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGM 200

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           +LHS   +M       +  AL++MY+KCG ++ A+ VFD++S+K    W+ +I GY  + 
Sbjct: 201 KLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNN 260

Query: 312 YSEEALDLYYEMRD-SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
            S EAL L+ E+   S ++ +  T   +I  C +L  LE  +  H  + R   G  +  N
Sbjct: 261 RSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLN 320

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           ++L+D +SK G I+ A+ +FD M  K++ISWN+++ G   HG G EA+  F  M    ++
Sbjct: 321 NSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQ 380

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           P+ +TF+ VL+ACS +GL + G ++F  +   + ++ ++ HY CM++LL R GLL EA  
Sbjct: 381 PDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEARE 440

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
            IR  P +    +W ++L ACRV  NLELG+ AA  L  +EP     Y++L NIY     
Sbjct: 441 FIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDGVYILLSNIYARRKM 500

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
             E  +V   +  KG++  P CS + +    H FL+GD SH +  EI   + ++  ++  
Sbjct: 501 WNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAEISIMLRQVREKLKL 560

Query: 611 HGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
            GYV +   +L ++D+ +++  +S HSEKLA+ +GL+ +     + I+++ R+C DCH  
Sbjct: 561 VGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIVILKNLRVCSDCHTL 620

Query: 670 IKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           IKL++ +  R+I +RD +RFHHFKDG CSC DYW
Sbjct: 621 IKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 165/336 (49%), Gaps = 29/336 (8%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I   + N    EAL L++ +E E GF     T   L+SAC  L+ +    ++ S++  
Sbjct: 150 SMISGYMKNHCPNEALLLYKKME-EDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIRE 208

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
              +    + + ++ M+ +CG +  AR++FD++ ++++ + + +I G + +    EA  L
Sbjct: 209 MDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQL 268

Query: 219 FLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           F ++    +      T   +I A A L  +  G+ +H    +   G +V ++ +LIDM+S
Sbjct: 269 FREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFS 328

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           KCG I+ A+ +FD MS K  + WN+++ G ALHG   EAL  ++ M+ + ++ D  TF  
Sbjct: 329 KCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIG 388

Query: 338 IIRICTRLASLEHAKQAHAGLVRHG----------FGLDIVAN--SALVDFYSKWGRIED 385
           ++  C+           HAGLV+ G          +G+ + +     +VD   + G + +
Sbjct: 389 VLTACS-----------HAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAE 437

Query: 386 ARHVFDKM-LCKNVISWNALIAG---YGNHGRGEEA 417
           AR     M L  +   W +++     Y N   GEEA
Sbjct: 438 AREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEA 473



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 69/320 (21%), Positives = 140/320 (43%), Gaps = 40/320 (12%)

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM-DHFTFSMIIRICT 343
           A  VF        + WN+++  +        AL  Y EM +    + D FTF  +++ C 
Sbjct: 31  AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
            L   +  K  H  +V++    D+   + L++ Y+  G ++ AR +F++M  +N + W +
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI-FQSMSRD 462
           +I+GY  +    EA+ L+++M  +G  P+ VT   ++SAC+   L + G  +   S  R+
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAE--LKDLGVGMKLHSHIRE 208

Query: 463 HKIKPRAMHYACMIELLGREGLLD-------------------------------EAFAL 491
             +K  A+  + ++ +  + G L                                EA  L
Sbjct: 209 MDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQL 268

Query: 492 IR----GAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP-EKLSNYVVLLNIYN 546
            R    G+  +  +    A+++AC   G+LE G++  + +   +    +S    L+++++
Sbjct: 269 FREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFS 328

Query: 547 SSGKLKEAAEVIRTLRRKGL 566
             G +  A  +  ++  K L
Sbjct: 329 KCGDIDAAKRIFDSMSYKDL 348


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/597 (35%), Positives = 336/597 (56%), Gaps = 14/597 (2%)

Query: 117 FEILE--FEGGFDVGSSTYDAL--ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           F++L     GG DV +     L  +  C     +  +K +  Y L   F  +  + N  +
Sbjct: 378 FDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFV 437

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG-- 230
             + +CG +  A+R+F  +  + + S N +I G   S D      L LD   +    G  
Sbjct: 438 ASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPR----LSLDAHLQMKISGLL 493

Query: 231 --SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
             S T  +++ A + L+ + +GK++H   ++     ++FV  +++ +Y  CG +   Q +
Sbjct: 494 PDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQAL 553

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD M +K+ V WNT+I GY  +G+ + AL ++ +M   G+++   +   +   C+ L SL
Sbjct: 554 FDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSL 613

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
              ++AHA  ++H    D     +L+D Y+K G I  +  VF+ +  K+  SWNA+I GY
Sbjct: 614 RLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGY 673

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
           G HG  +EA++LFE+M   G  P+ +TFL VL+AC+ SGL   G      M     +KP 
Sbjct: 674 GIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPN 733

Query: 469 AMHYACMIELLGREGLLDEAFALI-RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527
             HYAC+I++LGR G LD+A  ++      +    +W +LL++CR++ NLE+G+  A KL
Sbjct: 734 LKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKL 793

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG 587
           + +EPEK  NYV+L N+Y   GK ++  +V + +    LR    CSWIE+ ++   F+ G
Sbjct: 794 FELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNRKVFSFVVG 853

Query: 588 DQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLI 646
           ++     +EI      + ++ISK GY P+  ++  D+ E+E+   L  HSEKLA+ +GLI
Sbjct: 854 ERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEKLALTYGLI 913

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            TS+ T +++ ++ RIC DCHNA KLI+ V  REIVVRD  RFHHFK+G+CSCGDYW
Sbjct: 914 KTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 110/444 (24%), Positives = 209/444 (47%), Gaps = 7/444 (1%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           +G F    +T   ++  C   R I   K V  + +    + +L + N ++ M+ +CG + 
Sbjct: 285 DGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCIT 344

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR--TFATMIRA 240
           +A+ +F     +N+VS N ++ G    GD    F +   +     D  +   T    +  
Sbjct: 345 NAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPV 404

Query: 241 SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW 300
                 +   K+LH  +LK  F  N  V+ A +  Y+KCGS+  AQ VF  +  KT   W
Sbjct: 405 CFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSW 464

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           N +I G+A       +LD + +M+ SG+  D FT   ++  C++L SL   K+ H  ++R
Sbjct: 465 NALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIR 524

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
           +    D+    +++  Y   G +   + +FD M  K+++SWN +I GY  +G  + A+ +
Sbjct: 525 NWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGV 584

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
           F QM+L G++   ++ + V  ACS       G E   + +  H ++  A     +I++  
Sbjct: 585 FRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREA-HAYALKHLLEDDAFIACSLIDMYA 643

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNY 538
           + G + ++  +  G   K+T + W A++    ++G  +  +  F   +  G  P+ L+ +
Sbjct: 644 KNGSITQSSKVFNGLKEKSTAS-WNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLT-F 701

Query: 539 VVLLNIYNSSGKLKEAAEVIRTLR 562
           + +L   N SG + E    +  ++
Sbjct: 702 LGVLTACNHSGLIHEGLRYLDQMK 725



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 146/295 (49%), Gaps = 11/295 (3%)

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDY---LE 214
           ST    D  +  R++ M+  CG   D+R +FD +  +NL   N +I+    +  Y   LE
Sbjct: 113 STRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLE 172

Query: 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
            F+  +   +   D    T+  +I+A AG+  + +G  +H   +K G  ++VFV  AL+ 
Sbjct: 173 TFIEMISTTDLLPD--HFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVS 230

Query: 275 MYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR----DSGVKM 330
            Y   G + DA  +FD M E+  V WN++I  ++ +G+SEE+  L  EM     D     
Sbjct: 231 FYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMP 290

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
           D  T   ++ +C R   +   K  H   V+     ++V N+AL+D YSK G I +A+ +F
Sbjct: 291 DVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIF 350

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG--MRPNHVTFLAVLSAC 443
                KNV+SWN ++ G+   G      ++  QML  G  ++ + VT L  +  C
Sbjct: 351 KMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVC 405


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 202/581 (34%), Positives = 331/581 (56%), Gaps = 2/581 (0%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G +  + TY A++ AC     + + K +  ++L +    ++ +RN ++ M+ +CG + D+
Sbjct: 165 GLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDS 224

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           + LF  M  +++VS N +IA     G   +AF LF  +          TF++++ A A  
Sbjct: 225 KSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASP 284

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
           + +  G+ LH      GF  +  +   LI M+++CGS+E A+  F  + +K    WNT++
Sbjct: 285 KRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTML 344

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           A YA     ++AL LY  M   G   D FTFS ++  C  L +L   K  H      GF 
Sbjct: 345 AAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFE 404

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
            D++  +ALV+ Y+K G + DA+  FD +  K+V+SW+A+IA    HG  EEA+EL   M
Sbjct: 405 KDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLM 464

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
            L G+  N VT  +VL ACS  G    G + F  +S+D  I+    +    I+LLGR G 
Sbjct: 465 NLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGW 524

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L EA  ++   PFK +      LL  C+V+G++  GK   +++  +EPE   +YV+L N+
Sbjct: 525 LKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNM 584

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           Y ++G+  + A++ R +R+KG++    CS IE + + + F  GD S+ +  EI  +++R+
Sbjct: 585 YAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELERL 644

Query: 605 MLEIS-KHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRI 662
              +  + GYVP+ + +  DV D++++ +L +HSEK+A+ FGLI +   + L+I+++ R+
Sbjct: 645 YSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSPPGSTLRIIKNLRV 704

Query: 663 CCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           C DCH   KL + +TGR I+VRD +RFHHF+ G+CSCGDYW
Sbjct: 705 CSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 745



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 207/420 (49%), Gaps = 6/420 (1%)

Query: 101 IEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159
           +E  V N  Y+EALE++ E++  E   D  + T  ++++AC  L  + E + V       
Sbjct: 40  VECYVQNAMYQEALEVYKEMVRKEISID--AYTLSSVLAACTKLLDVEEGRMVQRKAEEL 97

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE-RNLVSCNMIIAGMIDSGDYLEAFLL 218
           GFE D+ +   ++ +  +CG + +A  +F  M   R+++S   +I   +  G    A   
Sbjct: 98  GFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDT 157

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           +  +  +  +  + T+A ++ A +  + +  GK +H   L+     N+ V  ALI MY+K
Sbjct: 158 YWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAK 217

Query: 279 CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
           CGS++D++ +F  M  K  V WN +IA Y L+G+ ++A  L++ M   G   D +TFS I
Sbjct: 218 CGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSI 277

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           +  C     LE  +  H  +   GF  D    + L+  +++ G +E AR  F  +  K +
Sbjct: 278 LGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKEL 337

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
            +WN ++A Y    +G++A+ L++ MLL G  P+  TF +V+ +C+  G    G +    
Sbjct: 338 GAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREG-KFIHE 396

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
            S     +   +    ++ +  + G L +A     G   K   + W+A++ A   +G+ E
Sbjct: 397 CSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVS-WSAMIAASAQHGHAE 455



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 200/404 (49%), Gaps = 37/404 (9%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D ++ N ++ M+ +C    DAR++FD + +RN  S ++++   + +  Y EA  ++ ++ 
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
            +     + T ++++ A   L  +  G+ +   A ++GF  +V V+ +LI +++KCG +E
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 284 DAQGVFDEMSE-KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
           +A+ VF  M   +  +    +I  Y  HG ++ ALD Y++MR  G++ D FT++ I+  C
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
           +    L   K  H  ++      +I   +AL+  Y+K G ++D++ +F  M  K+V+SWN
Sbjct: 181 SSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSWN 240

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
           A+IA Y  +G  ++A  LF +M   G  P+  TF ++L AC+     E G          
Sbjct: 241 AMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDG---------- 290

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
                R +H    + +  R    D  FA+         +N   ++ T C   G+LE    
Sbjct: 291 -----RMLH----VRITARG--FDRDFAM---------QNNLISMFTRC---GSLES--- 324

Query: 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           A    Y +E ++L  +  +L  Y    K K+A  + + +  +G 
Sbjct: 325 ARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGF 368


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/586 (32%), Positives = 328/586 (55%), Gaps = 32/586 (5%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           K + ++ +  GF+ +L+++   + M   C ++  AR++FD      +V+ N++++G    
Sbjct: 127 KVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRV 186

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
             + ++ +LF+++ +      S T   M+ A + L+ +  GK ++          N+ + 
Sbjct: 187 KQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILE 246

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA--------------------- 308
             LIDM++ CG +++AQ VFD M  +  + W +I+ G+A                     
Sbjct: 247 NVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYV 306

Query: 309 -----LHGYSE-----EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
                + GY       EAL L+ EM+ S VK D FT   I+  C  L +LE  +     +
Sbjct: 307 SWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYI 366

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
            ++    D    +AL+D Y K G +  A+ VF +M  K+  +W A+I G   +G GEEA+
Sbjct: 367 DKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEAL 426

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478
            +F  M+   + P+ +T++ VL AC+ +G+ E+G   F SM+  H IKP   HY CM++L
Sbjct: 427 AMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDL 486

Query: 479 LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538
           LGR G L+EA  +I   P K    +W +LL ACRV+ N++L + AA+++  +EPE  + Y
Sbjct: 487 LGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVY 546

Query: 539 VVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIY 598
           V+L NIY +  + +   +V + +  +G++  P CS +E+    + F++GDQSH Q+KEIY
Sbjct: 547 VLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIY 606

Query: 599 RKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIV 657
            K++ MM ++ K GY P+   +  D+ E+++    Y HSEKLA+A+ LI++     ++IV
Sbjct: 607 AKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIV 666

Query: 658 QSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++ R+C DCH+  KL++    RE++VRD +RFHHF+ G CSC ++W
Sbjct: 667 KNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 172/374 (45%), Gaps = 38/374 (10%)

Query: 108 KRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
           K+++++  LF  +E + G    S T   ++SAC  L+ +   K ++ Y+     E +L +
Sbjct: 187 KQFKKSKMLFIEME-KRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLIL 245

Query: 168 RNRVLLMHVRCGMM------------------------------ID-ARRLFDEMPERNL 196
            N ++ M   CG M                              ID AR+ FD++PER+ 
Sbjct: 246 ENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDY 305

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256
           VS   +I G +    ++EA  LF ++          T  +++ A A L  + +G+ + + 
Sbjct: 306 VSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTY 365

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
             K    ++ FV  ALIDMY KCG++  A+ VF EM  K    W  +I G A++G+ EEA
Sbjct: 366 IDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEA 425

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL-VRHGFGLDIVANSALVD 375
           L ++  M ++ +  D  T+  ++  CT    +E  +     + ++HG   ++     +VD
Sbjct: 426 LAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVD 485

Query: 376 FYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-- 432
              + GR+E+A  V   M  K N I W +L+     H +  +  E+  + +L     N  
Sbjct: 486 LLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVH-KNVQLAEMAAKQILELEPENGA 544

Query: 433 -HVTFLAVLSACSR 445
            +V    + +AC R
Sbjct: 545 VYVLLCNIYAACKR 558



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 158/324 (48%), Gaps = 17/324 (5%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDM--YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           KQ+HS  +KMG   +      +I      + G +  A+ VFD + + T   WNT+I GY+
Sbjct: 24  KQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMIKGYS 83

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
              + +  + +Y  M  S +K D FTF  +++  TR  +L++ K      V+HGF  ++ 
Sbjct: 84  RINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLF 143

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
              A +  +S    ++ AR VFD      V++WN +++GY    + +++  LF +M   G
Sbjct: 144 VQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRG 203

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           + PN VT + +LSACS+    E G  I++ ++    ++   +    +I++    G +DEA
Sbjct: 204 VSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGG-IVERNLILENVLIDMFAACGEMDEA 262

Query: 489 FALIRGAPFKTTKNM----WAALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNYVVLLN 543
            ++     F   KN     W +++T     G ++L    A K +   PE+   ++  +++
Sbjct: 263 QSV-----FDNMKNRDVISWTSIVTGFANIGQIDL----ARKYFDQIPERDYVSWTAMID 313

Query: 544 IYNSSGKLKEAAEVIRTLRRKGLR 567
            Y    +  EA  + R ++   ++
Sbjct: 314 GYLRMNRFIEALALFREMQMSNVK 337


>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g26782, mitochondrial-like [Glycine max]
          Length = 555

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 206/531 (38%), Positives = 316/531 (59%), Gaps = 16/531 (3%)

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD---------CGSRT 233
           D+R LFDE+P+R++VS   IIAG + +    +A  +F +L  E S            S  
Sbjct: 31  DSRHLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSVL 90

Query: 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293
              ++ A + L    V + +H   +K GF   V V   L+D Y+K G +  A+ VFD M+
Sbjct: 91  LGCVVSAFSKLGWRGVTEGVHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVAK-VFDGMN 149

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
           E     WN++IA YA +G S EA  ++ +M  SG    +F ++ +I       +L+  K 
Sbjct: 150 ESDHYFWNSVIAEYAQNGLSAEAFSVFGDMVKSG----NFRYNAVIMDXGLSGALQLGKC 205

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            H  +++      +   +++VD Y K  R+E AR  FD M  KNV SW A++AGYG HGR
Sbjct: 206 IHHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHGR 265

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
            +EA+E+F +M+ +G++PN++TF++VL+ACS +G+ + G   F  M  +  ++P   HY 
Sbjct: 266 AKEAMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEGXHWFNRMKCEFIVEPGIEHYL 325

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533
           CM++LLGR G L   + LI+    K    +W +LL ACR++ N+ELG+ +A KL+ ++  
Sbjct: 326 CMVDLLGRAGYL-XCYGLIKEMNAKPDFIIWGSLLGACRIHKNVELGEISARKLFELDXS 384

Query: 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQ 593
               YV+L NIY  +G+  E   +   ++ +GL   P  S +E+K + HV L GD+ H Q
Sbjct: 385 NCGYYVLLSNIYADAGRWDEVERMRILMKSRGLLKAPGFSIVELKGRIHVLLVGDKEHPQ 444

Query: 594 TKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWT 652
            ++IY  +D+  +++ + GY+P    +L DVDE+E+  VL  HSEKLAVAFG++N+   +
Sbjct: 445 HEKIYEYLDKXNVKLQELGYMPNXNMVLHDVDEEEKGMVLRVHSEKLAVAFGIMNSVPGS 504

Query: 653 PLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            + I+++ RIC DC+  IKLI  V  REIVVRD+ RFHHFK+G CSCGDYW
Sbjct: 505 IIHIIKNLRICGDCNVVIKLIFKVVNREIVVRDSKRFHHFKEGSCSCGDYW 555


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 224/671 (33%), Positives = 333/671 (49%), Gaps = 97/671 (14%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S TY  L+  C    S  E +++ ++ +S+GF+ D+Y+RN ++ ++  CG +  ARR+F+
Sbjct: 105 SYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFE 164

Query: 190 E-------------------------------MPERNLVSCNMIIA-----GMIDSGDYL 213
           E                               MPERN ++ N +IA     G ++    +
Sbjct: 165 ESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRI 224

Query: 214 ----------------------------EAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
                                       EA +LF+++             + + A + + 
Sbjct: 225 FNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVL 284

Query: 246 LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE-------------- 291
            + +G+ +H  A+K+G  D V +  ALI +YS CG I DA+ +FD+              
Sbjct: 285 NVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMI 344

Query: 292 ------------------MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
                             M EK  V W+ +I+GYA H    EAL L+ EM+  GV+ D  
Sbjct: 345 SGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDET 404

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
                I  CT LA+L+  K  HA + R+   ++++ ++ L+D Y K G +E+A  VF  M
Sbjct: 405 ALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAM 464

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             K V +WNA+I G   +G  E+++ +F  M   G  PN +TF+ VL AC   GL   G 
Sbjct: 465 EEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGR 524

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
             F SM  +HKI+    HY CM++LLGR GLL EA  LI   P       W ALL ACR 
Sbjct: 525 HYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRK 584

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACS 573
           + + E+G+    KL  ++P+    +V+L NIY S G      E+   + + G+   P CS
Sbjct: 585 HRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCS 644

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRV-L 632
            IE     H FL+GD++H Q  +I   +D +  ++   GYVP    +  D+DE+E+   L
Sbjct: 645 MIEANGTVHEFLAGDKTHPQINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDEEEKETAL 704

Query: 633 SYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHF 692
             HSEKLAVAFGLI  S  TP+++ ++ RIC DCH  +KLI+    R+IVVRD  RFHHF
Sbjct: 705 FRHSEKLAVAFGLITISPPTPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRDRHRFHHF 764

Query: 693 KDGMCSCGDYW 703
           K G CSC D+W
Sbjct: 765 KHGACSCMDFW 775



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 151/321 (47%), Gaps = 48/321 (14%)

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID---ARRL 187
           ST D+L+ +C   +  R  K++ S  + TG   D Y  +R++        ++    + R+
Sbjct: 4   STLDSLLQSC---KCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRI 60

Query: 188 FDEMPERNLVSCNMII-AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           F+ +   N  + N I+ A +       +A L +       +   S T+  +++  A    
Sbjct: 61  FNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVS 120

Query: 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAG 306
              G+QLH+ A+  GF  +V+V   L+++Y+ CGS+  A+ VF+E      V WNT++AG
Sbjct: 121 EFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAG 180

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           Y   G  EEA  ++  M +                                        +
Sbjct: 181 YVQAGEVEEAERVFEGMPER---------------------------------------N 201

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEAVELFEQM 424
            +A+++++  + + G +E AR +F+ +    ++++SW+A+++ Y  +  GEEA+ LF +M
Sbjct: 202 TIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEM 261

Query: 425 LLNGMRPNHVTFLAVLSACSR 445
             +G+  + V  ++ LSACSR
Sbjct: 262 KGSGVAVDEVVVVSALSACSR 282



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 159/337 (47%), Gaps = 29/337 (8%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSI---EDAQGVFDEMSEKTTVGWNTII-AG 306
           KQL S  +  G   + + +  LI+  S   ++     +  +F+ +    T  WNTI+ A 
Sbjct: 20  KQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNPNTFTWNTIMRAH 79

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
             L     +AL  Y     S  K D +T+ ++++ C    S    +Q HA  V  GF  D
Sbjct: 80  LYLQNSPHQALLHYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQLHAHAVSSGFDGD 139

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +   + L++ Y+  G +  AR VF++    +++SWN L+AGY   G  EEA  +FE M  
Sbjct: 140 VYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGM-- 197

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM-HYACMIELLGREGLL 485
                N +   ++++   R G  E+   IF  +    + + R M  ++ M+    +  + 
Sbjct: 198 --PERNTIASNSMIALFGRKGCVEKARRIFNGV----RGRERDMVSWSAMVSCYEQNEMG 251

Query: 486 DEAFAL---IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE-KLSNYV-- 539
           +EA  L   ++G+     + +  + L+AC    N+E+G++    ++G+  +  + +YV  
Sbjct: 252 EEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRW----VHGLAVKVGVEDYVSL 307

Query: 540 --VLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574
              L+++Y+S G++ +A    R +   G  +L   SW
Sbjct: 308 KNALIHLYSSCGEIVDA----RRIFDDGGELLDLISW 340


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/474 (41%), Positives = 282/474 (59%), Gaps = 3/474 (0%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           T+  +IRA      I  GKQ+H+  LK GFG + F    LI MY    S+E A+ VFD M
Sbjct: 96  TYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNM 155

Query: 293 SEK--TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            ++   +V WN +IA Y       EA  L+  MR   V +D F  + ++  CT L +LE 
Sbjct: 156 PQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQ 215

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            K  H  + + G  LD    + ++D Y K G +E A  VF+++  K + SWN +I G   
Sbjct: 216 GKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAM 275

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           HG+GE A+ELF++M    + P+ +TF+ VLSAC+ SGL E G   FQ M+    +KP   
Sbjct: 276 HGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGME 335

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           H+ CM++LLGR GLL+EA  LI   P      +  AL+ ACR++GN ELG+   +K+  +
Sbjct: 336 HFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIEL 395

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           EP     YV+L N+Y S+G+ ++ A+V + +  +G++  P  S IE +     F++G ++
Sbjct: 396 EPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRA 455

Query: 591 HVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTS 649
           H Q KEIY K+D ++  I   GYVP+   +L D+DE+E +  L YHSEKLA+AFGL+ T 
Sbjct: 456 HPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTK 515

Query: 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
               L+I ++ RIC DCH A KLI+ V  REI++RD +RFHHF+ G CSC DYW
Sbjct: 516 PGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 103/331 (31%), Positives = 153/331 (46%), Gaps = 45/331 (13%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY  LI AC    +I E K++ +++L  GF  D +  N ++ M+V    +  ARR+FD M
Sbjct: 96  TYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNM 155

Query: 192 PE--RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
           P+  RN VS N +IA  + S    EAF LF  +  E         A+M+ A  GL  +  
Sbjct: 156 PQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQ 215

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           GK +H    K G   +  ++  +IDMY KCG +E A  VF+E+ +K    WN +I G A+
Sbjct: 216 GKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAM 275

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
           HG  E A++L+ EM    V  D  TF  ++  C           AH+GLV          
Sbjct: 276 HGKGEAAIELFKEMEREMVAPDGITFVNVLSAC-----------AHSGLV---------- 314

Query: 370 NSALVDFYSKWGRIEDARHVFDKM-----LCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
                         E+ +H F  M     L   +  +  ++   G  G  EEA +L  +M
Sbjct: 315 --------------EEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEM 360

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
            +N   P+     A++ AC   G +E G +I
Sbjct: 361 PVN---PDAGVLGALVGACRIHGNTELGEQI 388



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 123/256 (48%), Gaps = 11/256 (4%)

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           +GY     +   + +Y  M    V  + FT+  +IR C    ++E  KQ HA +++ GFG
Sbjct: 67  SGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFG 126

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEAVELFE 422
            D  + + L+  Y  +  +E AR VFD M    +N +SWNA+IA Y    R  EA  LF+
Sbjct: 127 ADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFD 186

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           +M L  +  +     ++LSAC+  G  E+G  I   + +   I+  +     +I++  + 
Sbjct: 187 RMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKS-GIELDSKLATTVIDMYCKC 245

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS----NY 538
           G L++A  +    P K   + W  ++    ++G    G+ A E    ME E ++     +
Sbjct: 246 GCLEKASEVFNELPQKGISS-WNCMIGGLAMHGK---GEAAIELFKEMEREMVAPDGITF 301

Query: 539 VVLLNIYNSSGKLKEA 554
           V +L+    SG ++E 
Sbjct: 302 VNVLSACAHSGLVEEG 317



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 107/230 (46%), Gaps = 7/230 (3%)

Query: 89  QMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIRE 148
           Q  + S    + I   V + R  EA  LF+ +  E    +      +++SAC GL ++ +
Sbjct: 157 QRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLEN-VVLDKFVAASMLSACTGLGALEQ 215

Query: 149 VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
            K +  Y+  +G E D  +   V+ M+ +CG +  A  +F+E+P++ + S N +I G+  
Sbjct: 216 GKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAM 275

Query: 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK---QLHSCALKMGFGDN 265
            G    A  LF ++  E       TF  ++ A A   L+  GK   Q  +  L +  G  
Sbjct: 276 HGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGME 335

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYSE 314
            F  C ++D+  + G +E+A+ + +EM      G    ++    +HG +E
Sbjct: 336 HF-GC-MVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTE 383


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/569 (34%), Positives = 323/569 (56%), Gaps = 36/569 (6%)

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++  +VR   ++ AR L + M +   V+ N +I+G +  G Y EAF L   +        
Sbjct: 214 IIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLD 273

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDN----VFVSCALIDMYSKCGSIEDAQ 286
             T+ ++I A++   L ++G+Q+H+  L+     +    + V+ ALI +Y++CG + +A+
Sbjct: 274 EYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEAR 333

Query: 287 GVFDEMSEKTTVGWNTI-------------------------------IAGYALHGYSEE 315
            VFD+M  K  V WN I                               I+G A +G+ EE
Sbjct: 334 RVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEE 393

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
            L L+ +M+  G++   + ++  I  C+ L SL++ +Q H+ +++ G    +   +AL+ 
Sbjct: 394 GLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNALIT 453

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            YS+ G +E A  VF  M   + +SWNA+IA    HG G +A++L+E+ML   + P+ +T
Sbjct: 454 MYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPDRIT 513

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
           FL +LSACS +GL + G   F +M   + I P   HY+ +I+LL R G+  EA  +    
Sbjct: 514 FLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVTESM 573

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           PF+    +W ALL  C ++GN+ELG  AA++L  + P++   Y+ L N+Y + G+  E A
Sbjct: 574 PFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWDEVA 633

Query: 556 EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
            V + +R +G++  P CSWIEV+   HVFL  D  H +   +YR +++++ E+ K GYVP
Sbjct: 634 RVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVP 693

Query: 616 EEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
           + K +L D++ EQ++  LS HSEKLAV +G++       +++ ++ RIC DCHNA K I+
Sbjct: 694 DTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYIS 753

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            V  REI+VRD  RFHHF++G CSC +YW
Sbjct: 754 KVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 171/364 (46%), Gaps = 60/364 (16%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD----L 165
           Y EA +L   +    G  +   TY ++ISA          ++V +Y+L T  +P     L
Sbjct: 255 YEEAFDLLRRMH-SLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVL 313

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL--- 222
            + N ++ ++ RCG +++ARR+FD+MP ++LVS N I++G +++    EA  +F ++   
Sbjct: 314 SVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVR 373

Query: 223 ----W---------EEFSDCGSRTFATM---------------IRASAGLELISVGKQLH 254
               W           F + G + F  M               I + + L  +  G+QLH
Sbjct: 374 SLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLH 433

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           S  +++G   ++ V  ALI MYS+CG +E A  VF  M    +V WN +IA  A HG+  
Sbjct: 434 SQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGV 493

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG----------FG 364
           +A+ LY +M    +  D  TF  I+  C+           HAGLV+ G          +G
Sbjct: 494 QAIQLYEKMLKEDILPDRITFLTILSACS-----------HAGLVKEGRHYFDTMRVCYG 542

Query: 365 LDIVAN--SALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELF 421
           +    +  S L+D   + G   +A++V + M        W AL+AG   HG  E  ++  
Sbjct: 543 ITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAA 602

Query: 422 EQML 425
           +++L
Sbjct: 603 DRLL 606



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 119/531 (22%), Positives = 228/531 (42%), Gaps = 126/531 (23%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           + V +++L++GF+P   + NR++  + +   +  AR LFD++P+ ++V+   +++    +
Sbjct: 16  RAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAA 75

Query: 210 GDYLEAFLLF-----------------------------LDLWEEFSDCG----SRTFAT 236
           G+   A  LF                             L L+ +    G      TF++
Sbjct: 76  GNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSS 135

Query: 237 MIRASAGLELISVG----KQLHSCALKMGFGD---------NVFVSCALIDMYSKCGSIE 283
           ++ A   L LI+      +QLH    K G            + +VSCA   + + C  + 
Sbjct: 136 VLGA---LSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMA 192

Query: 284 DAQGVFDE---------------------------------MSEKTTVGWNTIIAGYALH 310
            A+ +FDE                                 M++   V WN +I+GY   
Sbjct: 193 AARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHR 252

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH------GFG 364
           G+ EEA DL   M   G+++D +T++ +I   +        +Q HA ++R        F 
Sbjct: 253 GFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFV 312

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA--------------------- 403
           L +  N+AL+  Y++ G++ +AR VFDKM  K+++SWNA                     
Sbjct: 313 LSV--NNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREM 370

Query: 404 ----------LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
                     +I+G   +G GEE ++LF QM L G+ P    +   +++CS  G  + G 
Sbjct: 371 PVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQ 430

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           ++   + +       ++  A +I +  R GL++ A  +    P+  + + W A++ A   
Sbjct: 431 QLHSQIIQLGHDSSLSVGNA-LITMYSRCGLVEAADTVFLTMPYVDSVS-WNAMIAALAQ 488

Query: 514 NGNLELGKFAAEKLYGME--PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           +G+        EK+   +  P++++ ++ +L+  + +G +KE      T+R
Sbjct: 489 HGHGVQAIQLYEKMLKEDILPDRIT-FLTILSACSHAGLVKEGRHYFDTMR 538



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 66/304 (21%), Positives = 117/304 (38%), Gaps = 62/304 (20%)

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK------- 392
           R   +L+    A+  HA ++  GF    +  + L+D Y K   I  AR++FDK       
Sbjct: 4   RYLAQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIV 63

Query: 393 --------------------------MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
                                     M  ++ +S+NA+I  + +   G  A++LF QM  
Sbjct: 64  AATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKR 123

Query: 427 NGMRPNHVTFLAVLSACS-----RSGLSERGWEIFQ--SMSRDHKIKPRAMHY------- 472
            G  P+  TF +VL A S      +   +   E+F+  ++S    +      Y       
Sbjct: 124 LGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSP 183

Query: 473 ---ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
              +C++    R+ L DEA       P +  +  W  ++     N +L   +   E L G
Sbjct: 184 LVNSCVLMAAARK-LFDEA------PPGRRDEPAWTTIIAGYVRNDDLVAAR---ELLEG 233

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM--LPACSWIEVKKQPHVFLSG 587
           M       +  +++ Y   G  +EA +++R +   G+++      S I       +F  G
Sbjct: 234 MTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIG 293

Query: 588 DQSH 591
            Q H
Sbjct: 294 RQVH 297


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 196/540 (36%), Positives = 305/540 (56%), Gaps = 33/540 (6%)

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA-GLELISVGKQLHS 255
           V+ N +I+G    G + E+   F+D+    +     T+ +++ A   G   + +G Q+H 
Sbjct: 88  VAWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHG 147

Query: 256 CALKMGFGDNVFVSCALIDMYSKC-------------------------------GSIED 284
             +  G   ++ V  AL+DMY++C                               G +++
Sbjct: 148 RVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDE 207

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+ +FD M E+ TV W  +I GY       EAL+++ EM+ S V  D FT   +I  C +
Sbjct: 208 ARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQ 267

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           L +LE  +     + R G  +D    +AL+D YSK G IE A  VF  M  ++  +W A+
Sbjct: 268 LGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAI 327

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I G   +G  EEA+E+F +M+     P+ VTF+ VL+AC+ +GL ++G E F SM   + 
Sbjct: 328 ILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYN 387

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           I P  +HY C+I+LLGR G + EA   I   P      +W  LL ACRV+GN E+G+  A
Sbjct: 388 IAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVA 447

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
           E+L  ++PE    Y++L NIY    + ++   +   +  KG++  P CS IE+    H F
Sbjct: 448 ERLLELDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEF 507

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAF 643
           ++GDQSH  +KEIY K++ ++ +++  GY P+   +  +V E+E ++VL +HSEKLA+AF
Sbjct: 508 VAGDQSHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAF 567

Query: 644 GLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            L+++   T ++IV++ R+C DCHNAIKLI+ + GRE+VVRD +RFHHF+ G CSC DYW
Sbjct: 568 ALLSSKPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 177/403 (43%), Gaps = 47/403 (11%)

Query: 132 TYDALISAC-IGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC------------ 178
           TY +++SAC  G R +    +V   ++ +G  PDL + N ++ M+  C            
Sbjct: 124 TYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDG 183

Query: 179 -------------------GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
                              G + +AR LFD MPER+ VS   +I G + +  + EA  +F
Sbjct: 184 MQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMF 243

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
            ++          T  ++I A A L  + +G+ +     + G   + FV  ALIDMYSKC
Sbjct: 244 REMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKC 303

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           GSIE A  VF  M  +    W  II G A++GY EEA+++++ M       D  TF  ++
Sbjct: 304 GSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVL 363

Query: 340 RICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKN 397
             CT    ++  ++    ++  +    ++V    ++D   + G+I +A    D+M +  N
Sbjct: 364 TACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPN 423

Query: 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL---AVLSACSRSGLSERGWE 454
              W  L+A    HG  E   EL  + LL     N + ++    + + C+R       WE
Sbjct: 424 STIWGTLLAACRVHGNSEIG-ELVAERLLELDPENSMVYILLSNIYAKCNR-------WE 475

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
             + +   H I  + +       L+  +G++ E  A  +  P 
Sbjct: 476 DVRRLR--HAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPM 516



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 142/311 (45%), Gaps = 40/311 (12%)

Query: 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV 298
           RA+ G    +  + +H+  +++G G N  V+ +L+  Y+  G    A+ +  E    T V
Sbjct: 31  RAAGGSGSAAPARAVHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARALVGECD--TPV 88

Query: 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC---TRLASLEHAKQAH 355
            WN +I+G+   G   E+   + +M  +G      T+  ++  C   TR   L    Q H
Sbjct: 89  AWNALISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLL--GMQVH 146

Query: 356 AGLVRHGFGLDIVANSALVDFY-------SKW------------------------GRIE 384
             +V  G   D+   +ALVD Y       S W                        G+++
Sbjct: 147 GRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVD 206

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           +AR +FD+M  ++ +SW A+I GY    R  EA+E+F +M  + +  +  T ++V++AC+
Sbjct: 207 EARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACA 266

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
           + G  E G  +   MSR   IK  A     +I++  + G ++ A  + +G   +  K  W
Sbjct: 267 QLGALEMGEWVRVYMSR-QGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHR-DKFTW 324

Query: 505 AALLTACRVNG 515
            A++    VNG
Sbjct: 325 TAIILGLAVNG 335



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 5/233 (2%)

Query: 85  LPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLR 144
           L D   ++ +    + I+  V   R+REALE+F  +++         T  ++I+AC  L 
Sbjct: 211 LFDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYS-NVSADEFTMVSVITACAQLG 269

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           ++   + V  YM   G + D ++ N ++ M+ +CG +  A  +F  M  R+  +   II 
Sbjct: 270 ALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIIL 329

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM-GFG 263
           G+  +G   EA  +F  +          TF  ++ A     L+  G++     ++     
Sbjct: 330 GLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIA 389

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDE--MSEKTTVGWNTIIAGYALHGYSE 314
            NV     +ID+  + G I +A    D+  M+  +T+ W T++A   +HG SE
Sbjct: 390 PNVVHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTI-WGTLLAACRVHGNSE 441



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 121/260 (46%), Gaps = 24/260 (9%)

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA----SLEHAKQAHAGLVRHGFGLDIVA 369
           E+A+  Y  M   G + D +TF  +++   R A    S   A+  HA +VR G G +   
Sbjct: 1   EDAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAPARAVHAHVVRLGMGRNAHV 60

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            S+LV  Y+  G    AR +  +  C   ++WNALI+G+   GR  E+   F  M   G 
Sbjct: 61  ASSLVAAYTAGGDGAAARALVGE--CDTPVAWNALISGHNRGGRFGESCGSFVDMARAGA 118

Query: 430 RPNHVTFLAVLSACSRS------GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
            P  VT+++VLSAC +       G+   G  +   +  D +++        ++++     
Sbjct: 119 APTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVEN------ALVDMYAECA 172

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS-NYVVLL 542
            +  A+ +  G   ++  + W +LL+     G ++     A  L+   PE+ + ++  ++
Sbjct: 173 DMGSAWKVFDGMQVRSVVS-WTSLLSGLARLGQVD----EARDLFDRMPERDTVSWTAMI 227

Query: 543 NIYNSSGKLKEAAEVIRTLR 562
           + Y  + + +EA E+ R ++
Sbjct: 228 DGYVWAARFREALEMFREMQ 247


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 199/528 (37%), Positives = 312/528 (59%), Gaps = 3/528 (0%)

Query: 179 GMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMI 238
           G M  AR+LFDEM +      N I+ G + +G   +A  ++  +          TF  +I
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV 298
           +A A L  +  G  +H   +K G      V   L+ MY K G +  A+ +F  M E+  V
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358
            WN +IA     G+S +AL  + EM  +G+K D  T    +  C  L  LE  ++ +   
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFA 262

Query: 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
              G   +I+ ++A +D  +K G ++ A ++FD+M  +NVISW+ +I GY  +G  E+A+
Sbjct: 263 REEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKAL 322

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM--SRDHKIKPRAMHYACMI 476
            LF +M   G++PN+VTFLAVLSACS +G    GW+ F  M  S D  I+PR  HYACM+
Sbjct: 323 ALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMV 382

Query: 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
           +LLGR G L+EA+  I+  P +    +W ALL AC ++ N++LG+  A+ L+ + PE  S
Sbjct: 383 DLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIAS 442

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKE 596
            +V+L N+Y ++G+     +V + +++KG R + A S +E   + H+   GD+SH Q+  
Sbjct: 443 YHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSAS 502

Query: 597 IYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQ 655
           I  K++ ++ ++   GY+PE  ++  DV DE+++  LS HSEKLA+AF LIN S   P++
Sbjct: 503 ILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPKFPIR 562

Query: 656 IVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++++ RIC DCH   KL++ +T REI++RD +RFHHFK+G+CSC D+W
Sbjct: 563 VMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 193/569 (33%), Positives = 323/569 (56%), Gaps = 1/569 (0%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           A ++AC    ++ + + V +Y++  G E D+ +   +L M+ +CG +  A  +F  MP R
Sbjct: 215 AALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSR 274

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
            +V+ N +I G   +G   EAF  F+ +  E       T   ++ A A  E    G+ +H
Sbjct: 275 TVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVH 334

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
               +  F  +V +  AL++MYSK G ++ ++ +F +M+ KT V WN +IA Y       
Sbjct: 335 GYVTRSQFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYN 394

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EA+ L+ E+ +  +  D+FT S ++     L  L   +Q H+ +VR  +G + +  +A++
Sbjct: 395 EAITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVM 454

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
             Y++ G +  +R +FDKM  K+VISWN +I GY  HG+G+ A+E+F +M  NG++PN  
Sbjct: 455 HMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNES 514

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           TF++VL+ACS SG+++ GW  F  M RD+ I P+  HY CM +LLGR G L E    I  
Sbjct: 515 TFVSVLTACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLGRAGDLREVLKFIES 574

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            P   T  +W +LLTA R   ++++ ++AAE+++ +E +    YV+L ++Y  +G+ ++ 
Sbjct: 575 IPITPTFRIWGSLLTASRNRNDIDIAEYAAERIFELEHDNTGCYVILSSMYADAGRWEDV 634

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
             +  ++  KGLR   A S +E+      F++GD +H Q+K I+   D +  +I +  Y 
Sbjct: 635 QRIRSSMMEKGLRRTDARSIVELHGSSCSFVNGDMTHPQSKTIHEVSDVLSRKIGETDY- 693

Query: 615 PEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
           P   +    +  +   + + HS +LAV FGLI++    P+ + ++ RIC  CH+A+KLI+
Sbjct: 694 PRNLSDPISLTSRRTIIPNKHSVRLAVVFGLISSEARAPILVKKNVRICNHCHHALKLIS 753

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             + R IVV D + +H F DG C CGDYW
Sbjct: 754 KYSRRRIVVGDTNIYHEFLDGSCCCGDYW 782



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 227/469 (48%), Gaps = 41/469 (8%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGF-EPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
           T+  ++  C  L ++ E +   S  +  G    ++Y  N +L  + + GM+ DA R+FD 
Sbjct: 109 TFPVVVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAERVFDG 168

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE--EFSDCGSRTFATMIRASAGLELIS 248
           MP R++V+ N ++ G + +G    A   F ++ E  +    G    A +        L+ 
Sbjct: 169 MPVRDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQVQHDGVGIIAALAACCLDSALMQ 228

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
            G+++H+  ++ G   +V V  +L+DMY KCG+I  A+G+F  M  +T V WN +I GYA
Sbjct: 229 -GREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYA 287

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
           L+G  EEA D + +M+  G +++  T   ++  C +  S  + +  H  + R  F   +V
Sbjct: 288 LNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPHVV 347

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             +AL++ YSK G+++ +  +F +M  K ++SWN +IA Y       EA+ LF ++L   
Sbjct: 348 LETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQP 407

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR-----DHKIKPRAMH-YACMIELLGRE 482
           + P++ T  AV+ A    GL  +  ++   + R     +  +    MH YA   +++   
Sbjct: 408 LYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVSSR 467

Query: 483 GLLD---------------------------EAFALIRGAPFKTTKNMWAALLTACRVNG 515
            + D                           E F+ ++    +  ++ + ++LTAC V+G
Sbjct: 468 KIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTACSVSG 527

Query: 516 NLELGKFA---AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
             + G       ++ YG+ P+ + +Y  + ++   +G L+E  + I ++
Sbjct: 528 MADEGWIQFNLMQRDYGIIPQ-IEHYGCMTDLLGRAGDLREVLKFIESI 575



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 176/364 (48%), Gaps = 17/364 (4%)

Query: 158 STGFEPDLYMRNR-------VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG 210
           ST  EP   +R +       ++L H   G M DA       P+  L   N++I G  D+G
Sbjct: 29  STSKEPPPRVRPKRGPSLKSLVLSHAAAGRMHDALAAVRSSPDAFL--HNVVIRGFADAG 86

Query: 211 DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF-GDNVFVS 269
               A   +  +    +     TF  +++  A L  +  G+  HS A+++G  G  V+  
Sbjct: 87  LPEAALAAYRAMLAAGARPDRFTFPVVVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTG 146

Query: 270 CALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
            +L+  Y+K G + DA+ VFD M  +  V WN+++ GY  +G    ALD + EM + G++
Sbjct: 147 NSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHE-GLQ 205

Query: 330 MDHFTFSMI--IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387
           + H    +I  +  C   ++L   ++ HA ++RHG   D+   ++L+D Y K G I  A 
Sbjct: 206 VQHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAE 265

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
            +F  M  + V++WN +I GY  +G  EEA + F QM   G +   VT + +L+AC+++ 
Sbjct: 266 GMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTE 325

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA---FALIRGAPFKTTKNMW 504
            S  G  +   ++R  +  P  +    ++E+  + G +  +   F  +      +  NM 
Sbjct: 326 SSLYGRSVHGYVTRS-QFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMI 384

Query: 505 AALL 508
           AA +
Sbjct: 385 AAYM 388



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 73/243 (30%), Positives = 131/243 (53%), Gaps = 1/243 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I    LN    EA + F  ++ EG   V   T   L++AC    S    + V  Y+  + 
Sbjct: 283 IGGYALNGCPEEAFDCFVQMKAEG-HQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQ 341

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F P + +   +L M+ + G +  +  +F +M  + LVS N +IA  +    Y EA  LFL
Sbjct: 342 FLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFL 401

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           +L  +       T + ++ A   L L+   +Q+HS  +++ +G+N  V+ A++ MY++CG
Sbjct: 402 ELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCG 461

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            +  ++ +FD+M+ K  + WNTII GYA+HG  + AL+++ EM+ +G++ +  TF  ++ 
Sbjct: 462 DVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLT 521

Query: 341 ICT 343
            C+
Sbjct: 522 ACS 524



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 115/218 (52%), Gaps = 6/218 (2%)

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           N +I G+A  G  E AL  Y  M  +G + D FTF ++++ C RL +LE  + AH+  +R
Sbjct: 76  NVVIRGFADAGLPEAALAAYRAMLAAGARPDRFTFPVVVKCCARLGALEEGRAAHSAAIR 135

Query: 361 HGF-GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVE 419
            G  G ++   ++L+ FY+K G + DA  VFD M  +++++WN+++ GY ++G G  A++
Sbjct: 136 LGLVGSEVYTGNSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALD 195

Query: 420 LFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477
            F +M   G++  H  V  +A L+AC       +G E+   + R H ++        +++
Sbjct: 196 CFREM-HEGLQVQHDGVGIIAALAACCLDSALMQGREVHAYVIR-HGLEQDVKVGTSLLD 253

Query: 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           +  + G +  A  +    P +T    W  ++    +NG
Sbjct: 254 MYCKCGAIASAEGMFATMPSRTVVT-WNCMIGGYALNG 290



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 3/143 (2%)

Query: 99  SQIEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           + I   +  + Y EA+ LF E+L      D    T  A++ A + L  +R+ +++ SY++
Sbjct: 382 NMIAAYMYKEMYNEAITLFLELLNQPLYPDY--FTMSAVVPAFVLLGLLRQCRQMHSYIV 439

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
              +  +  + N V+ M+ RCG ++ +R++FD+M  ++++S N II G    G    A  
Sbjct: 440 RLDYGENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALE 499

Query: 218 LFLDLWEEFSDCGSRTFATMIRA 240
           +F ++          TF +++ A
Sbjct: 500 MFSEMKSNGLQPNESTFVSVLTA 522


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  370 bits (951), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 190/565 (33%), Positives = 335/565 (59%), Gaps = 7/565 (1%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           +I E KR+  +++  GF+   Y+ N ++ M+ +CG +  A+ +F   P RN+ S  +++A
Sbjct: 72  AIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAKSVFHITPRRNVFSWTIMVA 131

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
               +G Y++A  L   +  E     S TF  ++ A A L  +  G+ LH      GF  
Sbjct: 132 AFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVAALSWLDRGRALHRRIACCGFLA 191

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           ++FV+  LI+MY+KC S+ DA  VF+ ++ ++ + W  ++A YAL+G+  +AL ++  M 
Sbjct: 192 DIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMT 251

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
             GV+    TF  ++ +C  +A     ++ H G++      ++   +AL++ Y K    +
Sbjct: 252 LDGVEPTEVTFVTVVDVCADIAVFGIGREVH-GVIDARSEANVCVGNALINMYGKCASPD 310

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM-----LLNGMRPNHVTFLAV 439
           +AR VFD M  K++I+WN++IA YG +G G +A+E++++M      + G+  + +TF+ V
Sbjct: 311 EARKVFDAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFIGV 370

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499
           L ACS +GL +   +++ SM  D+  KP ++   C+I+LLGR G LDEA   I   P+  
Sbjct: 371 LFACSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPYHP 430

Query: 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
              +W  LL AC  + ++E    AA+++  + P    +YV L N+Y  + +  + A + +
Sbjct: 431 DHTIWTILLGACITHADVERAARAADRIMALRPTDSGSYVALSNLYALAERWDDMARMRK 490

Query: 560 TLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKT 619
            + ++G+  +   S IE+    H F++GD SH + +EIY ++ R+   I + GYVP+ K 
Sbjct: 491 LMDQRGVFKMAGKSSIEIGGVLHEFIAGDTSHPRKREIYEELRRIEGVIRERGYVPDIKA 550

Query: 620 LLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTG 678
           +L +   E ++++  +HSE+LA+AFG+I++   T L+I+++ R+C DCH+A K+I+  +G
Sbjct: 551 VLHNAAREAKEKMCCFHSERLAIAFGMISSPGGTELRIMKNLRVCPDCHSATKIISKFSG 610

Query: 679 REIVVRDASRFHHFKDGMCSCGDYW 703
           R+I+VRDA+RFH F++G CSC DYW
Sbjct: 611 RKIIVRDANRFHEFRNGSCSCEDYW 635



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 176/362 (48%), Gaps = 14/362 (3%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N  Y +AL L EI++ EG     S T+  L+ A   L  +   + +   +   GF  D++
Sbjct: 136 NGHYMDALNLLEIMDLEG-ISPNSITFIELLGAVAALSWLDRGRALHRRIACCGFLADIF 194

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N ++ M+ +C  + DA  +F+ +  R++++   ++A    +G + +A  +FL +  + 
Sbjct: 195 VANCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDG 254

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
            +    TF T++   A + +  +G+++H   +      NV V  ALI+MY KC S ++A+
Sbjct: 255 VEPTEVTFVTVVDVCADIAVFGIGREVHG-VIDARSEANVCVGNALINMYGKCASPDEAR 313

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS-----GVKMDHFTFSMIIRI 341
            VFD M  K  + WN++IA Y  +GY  +AL++Y  M++S     G+  D  TF  ++  
Sbjct: 314 KVFDAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFIGVLFA 373

Query: 342 CTRLASLEHAKQAHAGLV-RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVI 399
           C+    ++ + + ++ ++  +GF    +    L+D   + G +++A    + M    +  
Sbjct: 374 CSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPYHPDHT 433

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
            W  L+     H   E A    ++++   +RP        LS  +   L+ER W+    M
Sbjct: 434 IWTILLGACITHADVERAARAADRIM--ALRPTDSGSYVALS--NLYALAER-WDDMARM 488

Query: 460 SR 461
            +
Sbjct: 489 RK 490



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/225 (28%), Positives = 117/225 (52%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           +   A  +R       I+ GK++H   +  GF  + ++   L++MY KCGS++ A+ VF 
Sbjct: 57  AEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAKSVFH 116

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
               +    W  ++A +A +G+  +AL+L   M   G+  +  TF  ++     L+ L+ 
Sbjct: 117 ITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVAALSWLDR 176

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            +  H  +   GF  DI   + L++ Y+K   + DA  VF+ +  ++VI+W AL+A Y  
Sbjct: 177 GRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYAL 236

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           +G   +A+++F  M L+G+ P  VTF+ V+  C+   +   G E+
Sbjct: 237 NGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCADIAVFGIGREV 281



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 105/224 (46%), Gaps = 5/224 (2%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           + D  V       +  +R C   A++   K+ H  +V  GF       + LV+ Y K G 
Sbjct: 48  LEDRSVSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGS 107

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           ++ A+ VF     +NV SW  ++A + ++G   +A+ L E M L G+ PN +TF+ +L A
Sbjct: 108 LQAAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGA 167

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
            +     +RG  + + ++    +        C+I +  +   L +A ++      ++   
Sbjct: 168 VAALSWLDRGRALHRRIACCGFLAD-IFVANCLINMYAKCRSLADACSVFESLTSRSVI- 225

Query: 503 MWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNI 544
            W AL+ A  +NG     L  F    L G+EP +++ +V ++++
Sbjct: 226 AWTALVAAYALNGFFRDALKVFLLMTLDGVEPTEVT-FVTVVDV 268


>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
          Length = 584

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 190/463 (41%), Positives = 292/463 (63%), Gaps = 3/463 (0%)

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L  +  G  +H+ ++ +GFG + FV  AL+ +YSKCG +  A+ +FD + +++ V WN +
Sbjct: 122 LSALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAM 181

Query: 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363
           I+GY  +G +E A+++Y EM+ + V  D  TF   +  C +  +L+  ++    +V    
Sbjct: 182 ISGYEQNGLAERAIEVYREMQVAQVVPDSATFVATLSACAQAGALDLGREVERRIVSDQM 241

Query: 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ 423
            + +   SALV+ Y++ G +  AR  FD++  +NV++W ++IAGYG HG G EA++LF  
Sbjct: 242 DVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHL 301

Query: 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483
           M   G  PN VTF+AVL+AC+ +GL   G   F SM R + + PRA HY  M+++ GR G
Sbjct: 302 MRREGPTPNDVTFVAVLAACAHAGLVNEGRNAFDSMKRVYGLVPRAEHYCSMVDMYGRAG 361

Query: 484 LLDEAFALI-RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
           LLD+A   I    P +    +W A+L AC+++ N  LG   AE+L  +EPE  S+ V+L 
Sbjct: 362 LLDDAMQFICDSIPEEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLS 421

Query: 543 NIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVD 602
           NIY  SGK+    +V   + ++ L+     S IE+    H+F  G++SH QT+EIYR ++
Sbjct: 422 NIYALSGKMNHVEKVRNVMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYRYLE 481

Query: 603 RMMLEISKHGYVPEEKTLLPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWT-PLQIVQSH 660
            ++  IS  GYVPE  ++L +++E+E+ V L YHSEKLAVA+GL+ +S  T P++++++ 
Sbjct: 482 ELIHRISDAGYVPETDSVLHELEEEEREVALRYHSEKLAVAYGLMMSSGSTAPIRVIKNL 541

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           RIC DCH AIK ++ V  REI+VRD  RFHHFKDG CSC +YW
Sbjct: 542 RICGDCHLAIKFMSSVESREIIVRDKHRFHHFKDGKCSCLEYW 584



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 84/321 (26%), Positives = 158/321 (49%), Gaps = 34/321 (10%)

Query: 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI 202
           L ++R    V ++ +  GF  D +++  +++++ +CG +  AR+LFD + +R++V+ N +
Sbjct: 122 LSALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAM 181

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
           I+G   +G    A  ++ ++        S TF   + A A    + +G+++    +    
Sbjct: 182 ISGYEQNGLAERAIEVYREMQVAQVVPDSATFVATLSACAQAGALDLGREVERRIVSDQM 241

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
             +VF+  AL++MY++CG +  A+  FD + E+  V W ++IAGY +HG+  EA+ L++ 
Sbjct: 242 DVSVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHL 301

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG----------FGLDIVANS- 371
           MR  G   +  TF  ++  C           AHAGLV  G          +GL   A   
Sbjct: 302 MRREGPTPNDVTFVAVLAAC-----------AHAGLVNEGRNAFDSMKRVYGLVPRAEHY 350

Query: 372 -ALVDFYSKWGRIEDARHVFDKMLCKNVIS------WNALIAGYGNHGRGEEAVELFEQM 424
            ++VD Y + G ++DA     + +C ++        W A++     H      VE+ E++
Sbjct: 351 CSMVDMYGRAGLLDDAM----QFICDSIPEEPGPEVWTAMLGACKMHKNFNLGVEVAERL 406

Query: 425 L-LNGMRPNHVTFLAVLSACS 444
           + L    P+H   L+ + A S
Sbjct: 407 IALEPENPSHRVLLSNIYALS 427



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 136/287 (47%), Gaps = 37/287 (12%)

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           A  G   EA+  Y  +  + +    F F+   + C  L++L      HA  V  GFG D 
Sbjct: 85  AHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADLSALRTGMAVHAHSVLLGFGSDR 144

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              +ALV  YSK G++  AR +FD +  ++V++WNA+I+GY  +G  E A+E++ +M + 
Sbjct: 145 FVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVYREMQVA 204

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH------------------------ 463
            + P+  TF+A LSAC+++G  + G E+ + +  D                         
Sbjct: 205 QVVPDSATFVATLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLVSKA 264

Query: 464 -----KIKPR-AMHYACMIELLGREGLLDEA---FALIRGAPFKTTKNMWAALLTACRVN 514
                +++ R  + +  MI   G  G   EA   F L+R          + A+L AC   
Sbjct: 265 RDWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTPNDVTFVAVLAACAHA 324

Query: 515 GNLELGKFA---AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVI 558
           G +  G+ A    +++YG+ P +  +Y  ++++Y  +G L +A + I
Sbjct: 325 GLVNEGRNAFDSMKRVYGLVP-RAEHYCSMVDMYGRAGLLDDAMQFI 370



 Score = 70.9 bits (172), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 122/285 (42%), Gaps = 36/285 (12%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S+T+ A +SAC    ++   + V   ++S   +  +++ + ++ M+ RCG++  AR  FD
Sbjct: 210 SATFVATLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLVSKARDWFD 269

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
            + ERN+V+   +IAG    G   EA  LF  +  E       TF  ++ A A   L++ 
Sbjct: 270 RLQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTPNDVTFVAVLAACAHAGLVNE 329

Query: 250 GKQLHSCALKM-GFGDNVFVSCALIDMYSKCGSIEDA-QGVFDEMSEKTTVG-WNTIIAG 306
           G+       ++ G        C+++DMY + G ++DA Q + D + E+     W  ++  
Sbjct: 330 GRNAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFICDSIPEEPGPEVWTAMLGA 389

Query: 307 YALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
             +H                        F++ + +  RL +LE    +H  L+ + + L 
Sbjct: 390 CKMHK----------------------NFNLGVEVAERLIALEPENPSHRVLLSNIYALS 427

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
                       K   +E  R+V  K   K  I ++ +  G  +H
Sbjct: 428 -----------GKMNHVEKVRNVMIKRRLKKQIGYSLIELGGTSH 461


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 204/611 (33%), Positives = 328/611 (53%), Gaps = 51/611 (8%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLM--HVRCGMMIDARRLFDEMPERNLVSCNM 201
           +S+  +K++ S  + TG   +  ++N++L        G M  AR+LFD +PE ++ S N+
Sbjct: 25  KSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNI 84

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           +  G            L+L++ E        T+  + +       + +G++LH   +K G
Sbjct: 85  MFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSVALQLGRELHCHVVKYG 144

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY-------------- 307
              NVF   ALI+MYS CG I+ A+G+FD   +   V WN +I+GY              
Sbjct: 145 LDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIV 204

Query: 308 -----------------------------ALHGY-----SEEALDLYYEMRDSGVKMDHF 333
                                         + GY      +EAL L+ EM+ S +K D F
Sbjct: 205 TGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEF 264

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           T   ++  C +L +LE  +     + ++    D    +AL+D Y K G +E A  +F+ +
Sbjct: 265 TMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTL 324

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             ++  +W A++ G   +G GEEA+ +F QML   + P+ VT++ VLSAC+ +G+ + G 
Sbjct: 325 PQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGK 384

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           + F SM+  H I+P   HY CM++LLG+ G L EA  +I+  P K    +W ALL ACR+
Sbjct: 385 KFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRI 444

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACS 573
           + + E+ + A E++  +EP   + YV+  NIY +  K  +  E+ + +  +G++  P CS
Sbjct: 445 HKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCS 504

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLS 633
            IE+    H F++GDQSH QTKEIY K+++M  ++   GY P    +  D+ E+++    
Sbjct: 505 LIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAV 564

Query: 634 Y-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHF 692
           Y HSEKLA+AFGLIN+     ++IV++ R+C DCH+  KL++ V  RE++VRD +RFHHF
Sbjct: 565 YRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHF 624

Query: 693 KDGMCSCGDYW 703
           + G CSC DYW
Sbjct: 625 RHGSCSCKDYW 635



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/209 (20%), Positives = 97/209 (46%), Gaps = 3/209 (1%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           Y+EAL LF  ++          T  ++++AC  L ++   + + +Y+     + D ++ N
Sbjct: 244 YKEALMLFREMQ-TSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGN 302

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+ +CG +  A  +F+ +P+R+  +   ++ G+  +G   EA  +F  + +     
Sbjct: 303 ALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTP 362

Query: 230 GSRTFATMIRASAGLELISVGKQLH-SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
              T+  ++ A     ++  GK+   S   + G   N+     ++D+  K G +++A  +
Sbjct: 363 DEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEI 422

Query: 289 FDEMSEK-TTVGWNTIIAGYALHGYSEEA 316
              M  K  ++ W  ++    +H  +E A
Sbjct: 423 IKNMPMKPNSIVWGALLGACRIHKDAEMA 451


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 188/478 (39%), Positives = 290/478 (60%), Gaps = 8/478 (1%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC------GSIEDAQ 286
           TF  +++A AG+  + +G  +H+  +K GF ++  V   L+ MY  C      G +  A+
Sbjct: 229 TFPFVLKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVS-AK 287

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            VFDE   K +V W+ +I GYA  G S  A+ L+ EM+ +GV  D  T   ++  C  L 
Sbjct: 288 KVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLG 347

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           +LE  K   + + R      +   +AL+D ++K G ++ A  VF +M  + ++SW ++I 
Sbjct: 348 ALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIV 407

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           G   HGRG EAV +F++M+  G+ P+ V F+ VLSACS SGL ++G   F +M     I 
Sbjct: 408 GLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIV 467

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P+  HY CM+++L R G ++EA   +R  P +  + +W +++TAC   G L+LG+  A++
Sbjct: 468 PKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKE 527

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           L   EP   SNYV+L NIY    + ++  +V   +  KG+R +P  + IE+  + + F++
Sbjct: 528 LIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVA 587

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGL 645
           GD+SH Q KEIY  V+ M  EI + GYVP    +L D+DE+++   L  HSEKLA+AF L
Sbjct: 588 GDKSHDQYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFAL 647

Query: 646 INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           ++T   TP++IV++ R+C DCH+A K I+ V  REIVVRD +RFHHFK+G+CSCGD+W
Sbjct: 648 LSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 159/361 (44%), Gaps = 55/361 (15%)

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG------WNTIIA 305
           Q+HS  LK+G   N  V        S   ++  A  V     + T         +NT+I 
Sbjct: 140 QIHSLILKLGLHHNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIR 199

Query: 306 GYALHGYSE-EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
            +A   +S+  AL  Y  MR   V  + FTF  +++ C  +  LE     HA +V+ GF 
Sbjct: 200 AFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFE 259

Query: 365 LDIVANSALVDFY------SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418
            D    + LV  Y         G +  A+ VFD+   K+ ++W+A+I GY   G    AV
Sbjct: 260 EDPHVRNTLVHMYCCCCQDGSSGPVS-AKKVFDESPVKDSVTWSAMIGGYARAGNSARAV 318

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478
            LF +M + G+ P+ +T ++VLSAC+  G  E G  +   + R + ++   +  A +I++
Sbjct: 319 TLFREMQVTGVCPDEITMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNA-LIDM 377

Query: 479 LGREGLLDEAFALIRGAPFKTTKNMWAAL------------------------------- 507
             + G +D A  + R    +T  + W ++                               
Sbjct: 378 FAKCGDVDRAVKVFREMKVRTIVS-WTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVA 436

Query: 508 ----LTACRVNGNLELGKF---AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560
               L+AC  +G ++ G +     E ++ + P K+ +Y  ++++ + +G++ EA E +R 
Sbjct: 437 FIGVLSACSHSGLVDKGHYYFNTMENMFSIVP-KIEHYGCMVDMLSRAGRVNEALEFVRA 495

Query: 561 L 561
           +
Sbjct: 496 M 496



 Score = 50.8 bits (120), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 2/177 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T  +++SAC  L ++   K + SY+        + + N ++ M  +CG +  A ++F EM
Sbjct: 335 TMVSVLSACADLGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREM 394

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
             R +VS   +I G+   G  LEA L+F ++ E+  D     F  ++ A +   L+  G 
Sbjct: 395 KVRTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGH 454

Query: 252 QLHSCALKM-GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAG 306
              +    M      +     ++DM S+ G + +A      M  E   V W +I+  
Sbjct: 455 YYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTA 511


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 195/566 (34%), Positives = 328/566 (57%), Gaps = 15/566 (2%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM-----MIDARRLFDEMPERNLVSC 199
           S+  +K+  + +L TG   D Y+   ++  +             + R+FD + + N+   
Sbjct: 67  SLHHLKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLW 126

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK 259
           N +I   I++ +  +A LL+ ++          T+  +++A +   +++ G Q+H+  +K
Sbjct: 127 NCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVK 186

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDL 319
            G G +  +  + I MY+  G + +A+ + D+       G    +      G   EAL++
Sbjct: 187 HGLGGDGHILSSAIRMYASFGRLVEARRILDDKG-----GEVDAVCMPDRKGCFMEALEI 241

Query: 320 YYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379
           +++M+   ++   F    ++  C  L +L+  +  H    R+   LD V  ++LVD Y+K
Sbjct: 242 FHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAK 301

Query: 380 WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
            GRI+ A  VF+KM  K V SWNA+I G   HGR E+A++LF +M +N   PN +TF+ V
Sbjct: 302 CGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDIN---PNEITFVGV 358

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499
           L+AC+  GL ++G  IF SM +++ ++P+  HY C+++LLGR GLL EA  ++   P + 
Sbjct: 359 LNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEP 418

Query: 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
           T  +W ALL ACR +GN+ELG+   + L  +EP+    Y +L NIY  +G+ +E  EV +
Sbjct: 419 TPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRK 478

Query: 560 TLRRKGLRMLPACSWIEV-KKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEK 618
            ++ +G++  P  S I++ + + H F+ GD SH Q K+IY+ +D++   +   GY P+  
Sbjct: 479 LMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPS 538

Query: 619 TLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVT 677
            +L D+DE+E+    + HSEKLA+ FGLINTS  T ++IV++ R+C DCH+A KLI+ V 
Sbjct: 539 QVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVY 598

Query: 678 GREIVVRDASRFHHFKDGMCSCGDYW 703
            REI+VRD  R+HHF++G CSC D+W
Sbjct: 599 NREIIVRDRIRYHHFRNGACSCKDFW 624



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 166/359 (46%), Gaps = 58/359 (16%)

Query: 90  MKKPSAGICSQIEKLVL--NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
           ++KP+  + + + K+ +  N+ ++  L  +E++     F     TY A++ AC     + 
Sbjct: 118 VRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAH--FRPNKYTYPAVLKACSDAGVVA 175

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE---------MPERNLVS 198
           E  +V ++++  G   D ++ +  + M+   G +++ARR+ D+         MP+R    
Sbjct: 176 EGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPDRK--- 232

Query: 199 CNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCAL 258
                      G ++EA  +F  + +E          +++ A A L  +  G+ +H+ A 
Sbjct: 233 -----------GCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAK 281

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
           +     +  +  +L+DMY+KCG I+ A  VF++MS K    WN +I G A+HG +E+A+D
Sbjct: 282 RNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAID 341

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG----------FGLD-- 366
           L+ +M    +  +  TF  ++  C           AH GLV+ G          +G++  
Sbjct: 342 LFSKM---DINPNEITFVGVLNAC-----------AHGGLVQKGLTIFNSMRKEYGVEPQ 387

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WNALIAGYGNHGRGEEAVELFEQM 424
           I     +VD   + G + +A  V   +  +   + W AL+     HG     VEL E++
Sbjct: 388 IEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGN----VELGERV 442


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 193/569 (33%), Positives = 325/569 (57%), Gaps = 2/569 (0%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           AL + C+   S++  K +  Y++  G E D+ +   +L M+ +CG +  AR +F  MP R
Sbjct: 215 ALAACCLEFSSMQG-KEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLR 273

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
            +V+ N +I G   +    EAF  F+ +  E       T   ++ A A  E    G+ +H
Sbjct: 274 TVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVH 333

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
              ++  F  +V +  AL++MY K G +E ++ +F +++ KT V WN +IA Y       
Sbjct: 334 GYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYT 393

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EA+ L+ E+ +  +  D+FT S ++     L SL H +Q H+ ++  G+  + +  +A++
Sbjct: 394 EAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVL 453

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
             Y++ G +  +R +FDKM+ K+VISWN +I GY  HG+G+ A+E+F++M  NG++PN  
Sbjct: 454 HMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNES 513

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           TF++VL+ACS SGL + GW  F  M +++ + P+  HY CM +LLGREG L E    I  
Sbjct: 514 TFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIES 573

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            P   T  +W +LLTA R   ++++ ++AAE+++ +E +    Y+VL ++Y  +G+ ++ 
Sbjct: 574 MPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDV 633

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
             V   ++ KGLR     S +E+      F +GD SH Q++ I+   D +  +I +    
Sbjct: 634 ERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVSDILSRKIKETDDT 693

Query: 615 PEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
             +   +P V  +   + + HS +LAV FGLI++   +P+ + ++ RIC  CH+A+KLI+
Sbjct: 694 RNQSYPVP-VATRTTTMPNKHSVRLAVVFGLISSEIGSPILVKKNVRICNHCHHALKLIS 752

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             +GR IVV D+  +H F DG C CGDYW
Sbjct: 753 RYSGRRIVVGDSKIYHEFSDGSCCCGDYW 781



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 218/469 (46%), Gaps = 42/469 (8%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  ++  C  L  + E +     ++  G E D+Y  N ++  + + G++ DA R+FD M
Sbjct: 109 TFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGM 168

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV-G 250
           P R++V+ N+++ G + +G    A   F ++ +               A+  LE  S+ G
Sbjct: 169 PVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEFSSMQG 228

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           K++H   ++ G   ++ V  +L+DMY KCG +  A+ VF  M  +T V WN +I GYAL+
Sbjct: 229 KEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALN 288

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
              +EA D + +MR  G++++  T   ++  C +  S  + +  H  +VR  F   +V  
Sbjct: 289 ERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLE 348

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           +AL++ Y K G++E +  +F K+  K ++SWN +IA Y       EA+ LF ++L   + 
Sbjct: 349 TALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLY 408

Query: 431 PNHVTFL-----------------------------------AVLSACSRSGLSERGWEI 455
           P++ T                                     AVL   +RSG      EI
Sbjct: 409 PDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREI 468

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F  M     I    M     I   G+  L  E F  ++    +  ++ + ++LTAC V+G
Sbjct: 469 FDKMVSKDVISWNTMIMGYAIHGQGKTAL--EMFDEMKYNGLQPNESTFVSVLTACSVSG 526

Query: 516 NLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            ++ G      +   YGM P+ + +Y  + ++    G L+E  + I ++
Sbjct: 527 LVDEGWMHFNLMLQEYGMIPQ-IEHYGCMTDLLGREGDLREVLQFIESM 574



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 161/315 (51%), Gaps = 9/315 (2%)

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK 259
           N++I G  D+G    A   +  + E+ +     TF  +++  A L  +  G+  H   +K
Sbjct: 76  NVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIK 135

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDL 319
           +G   +V+   +L+  Y+K G +EDA+ VFD M  +  V WN ++ GY  +G    AL  
Sbjct: 136 LGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALAC 195

Query: 320 YYEMRDSGVKMDHFTFSMIIRI---CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
           + EM D+ +++ H +  +I  +   C   +S++  K+ H  ++RHG   DI   ++L+D 
Sbjct: 196 FQEMHDA-LEVQHDSVGIIAALAACCLEFSSMQ-GKEIHGYVIRHGLEQDIKVGTSLLDM 253

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           Y K G +  AR VF  M  + V++WN +I GY  + R +EA + F QM   G++   VT 
Sbjct: 254 YCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTA 313

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA---FALIR 493
           + +L+AC+++  S  G  +   + R  +  P  +    ++E+ G+ G ++ +   F  I 
Sbjct: 314 INLLAACAQTESSLYGRSVHGYVVR-RQFLPHVVLETALLEMYGKVGKVESSEKIFGKIA 372

Query: 494 GAPFKTTKNMWAALL 508
                +  NM AA +
Sbjct: 373 NKTLVSWNNMIAAYM 387



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 146/290 (50%), Gaps = 4/290 (1%)

Query: 106 LNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           LN+R  EA + F  +  EG   V   T   L++AC    S    + V  Y++   F P +
Sbjct: 287 LNERPDEAFDCFMQMRAEG-LQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHV 345

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            +   +L M+ + G +  + ++F ++  + LVS N +IA  +    Y EA  LFL+L  +
Sbjct: 346 VLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQ 405

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                  T +T++ A   L  +   +Q+HS  + +G+ +N  +  A++ MY++ G +  +
Sbjct: 406 PLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVAS 465

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
           + +FD+M  K  + WNT+I GYA+HG  + AL+++ EM+ +G++ +  TF  ++  C+ +
Sbjct: 466 REIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACS-V 524

Query: 346 ASLEHAKQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKM 393
           + L      H  L+   +G+   I     + D   + G + +     + M
Sbjct: 525 SGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESM 574



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 99  SQIEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           + I   +  + Y EA+ LF E+L      D    T   ++ A + L S+R  +++ SY++
Sbjct: 381 NMIAAYMYKEMYTEAITLFLELLNQPLYPDY--FTMSTVVPAFVLLGSLRHCRQIHSYII 438

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
             G+  +  + N VL M+ R G ++ +R +FD+M  ++++S N +I G    G    A  
Sbjct: 439 GLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALE 498

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           +F ++          TF +++ A +   L+  G
Sbjct: 499 MFDEMKYNGLQPNESTFVSVLTACSVSGLVDEG 531



 Score = 39.3 bits (90), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 15/160 (9%)

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
           ++ +LV   +  GR+++A      +   +    N +I G+ + G    A+  +  ML +G
Sbjct: 43  SSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDG 102

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWE---IFQSMSRDHKIKPRAMHYAC--MIELLGREG 483
            RP+  TF  V+  C+R G  + G     +   +  +H +      Y C  ++    + G
Sbjct: 103 ARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDV------YTCNSLVAFYAKLG 156

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
           L+++A  +  G P +     W  ++     NG   LG  A
Sbjct: 157 LVEDAERVFDGMPVRDIVT-WNIMVDGYVSNG---LGSLA 192


>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
 gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g52630
 gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 197/575 (34%), Positives = 340/575 (59%), Gaps = 11/575 (1%)

Query: 134 DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193
           D L+S+     +I+ ++ +  Y++ +G      + N ++  + +  +  D+RR F++ P+
Sbjct: 20  DLLLSSARTRSTIKGLQ-LHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQ 78

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELISV 249
           ++  + + II+    +    E   + L+  ++      R       +  ++ A L    +
Sbjct: 79  KSSTTWSSIISCFAQN----ELPWMSLEFLKKMMAGNLRPDDHVLPSATKSCAILSRCDI 134

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G+ +H  ++K G+  +VFV  +L+DMY+KCG I  A+ +FDEM ++  V W+ ++ GYA 
Sbjct: 135 GRSVHCLSMKTGYDADVFVGSSLVDMYAKCGEIVYARKMFDEMPQRNVVTWSGMMYGYAQ 194

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G +EEAL L+ E     + ++ ++FS +I +C     LE  +Q H   ++  F      
Sbjct: 195 MGENEEALWLFKEALFENLAVNDYSFSSVISVCANSTLLELGRQIHGLSIKSSFDSSSFV 254

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
            S+LV  YSK G  E A  VF+++  KN+  WNA++  Y  H   ++ +ELF++M L+GM
Sbjct: 255 GSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLKAYAQHSHTQKVIELFKRMKLSGM 314

Query: 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489
           +PN +TFL VL+ACS +GL + G   F  M ++ +I+P   HYA ++++LGR G L EA 
Sbjct: 315 KPNFITFLNVLNACSHAGLVDEGRYYFDQM-KESRIEPTDKHYASLVDMLGRAGRLQEAL 373

Query: 490 ALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549
            +I   P   T+++W ALLT+C V+ N EL  FAA+K++ + P     ++ L N Y + G
Sbjct: 374 EVITNMPIDPTESVWGALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADG 433

Query: 550 KLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEIS 609
           + ++AA+  + LR +G +     SW+E + + H F +G++ H ++KEIY K+  +  E+ 
Sbjct: 434 RFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEME 493

Query: 610 KHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHN 668
           K GY+ +   +L +VD +++ + + YHSE+LA+AFGLI      P++++++ R+C DCHN
Sbjct: 494 KAGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHN 553

Query: 669 AIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           AIK +++ T R I+VRD +RFH F+DG CSC DYW
Sbjct: 554 AIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588


>gi|449482566|ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Cucumis sativus]
          Length = 908

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 211/640 (32%), Positives = 347/640 (54%), Gaps = 37/640 (5%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I  LV   +Y EA + F  ++   G  V   +   L++AC G     + +++ +  L  G
Sbjct: 269 ISSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLSTLLTACAGSVKPMKGQQLHALALKVG 328

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP---------------------------- 192
            E  L + + ++  + +CG   D   LF+ MP                            
Sbjct: 329 LESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFN 388

Query: 193 ---ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
              +RN +S N ++AG+  + D   A  LF+++ EE  +    T  ++I A   L+   V
Sbjct: 389 KMPKRNCISYNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKV 448

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT--TVGWNTIIAGY 307
            +Q+    +K G   N  +  AL+DMY++CG +EDA+ +F + S +   T    ++I GY
Sbjct: 449 SQQIQGFVMKFGILSNSCIETALVDMYTRCGRMEDAEKIFYQRSLENDYTAMLTSMICGY 508

Query: 308 ALHGYSEEALDLYYEMRDSG-VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD 366
           A +G   EA+ L++  +  G + MD    + I+ +C  +   E   Q H   ++ G   +
Sbjct: 509 ARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCGSIGFHEMGMQMHCHALKSGLITE 568

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
               +A V  YSK   ++DA  VF+ M  ++++SWN L+AG+  H +G++A+ ++++M  
Sbjct: 569 TGVGNATVSMYSKCWNMDDAVRVFNTMNMQDIVSWNGLVAGHVLHWQGDKALGIWKKMEK 628

Query: 427 NGMRPNHVTFLAVLSACSRSGLS--ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484
            G++P+ +TF  ++SA   + L+  +    +F SM  +H IKP   HYA  I +LGR GL
Sbjct: 629 AGIKPDSITFALIISAYKHTELNLVDSCRSLFVSMETEHNIKPTLEHYASFISVLGRWGL 688

Query: 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544
           L+EA   IR  P +    +W ALL +CR+N N  L K AA  +  +EP+   +Y++  N+
Sbjct: 689 LEEAEQTIRNMPLEPDVYVWRALLNSCRINKNERLEKLAARNILAVEPKDPLSYILKSNL 748

Query: 545 YNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRM 604
           Y++SG+   + +V   +R KG R  P+ SWI  + + H F + D+SH Q K+IY  ++ +
Sbjct: 749 YSASGRWYYSEKVREDMREKGFRKHPSQSWIIHENKIHSFYARDRSHPQGKDIYSGLEIL 808

Query: 605 MLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRIC 663
           +LE  K GYVP+   +L +V+E Q++  L YHS KLA  FG++ T    P+QIV++ R+C
Sbjct: 809 ILECLKVGYVPDTSFVLQEVEERQKKEFLFYHSGKLAATFGILMTKPGKPIQIVKNVRLC 868

Query: 664 CDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            DCHN +K +++VT R+I++RD S FH F DG CSC DYW
Sbjct: 869 GDCHNFLKYVSIVTRRKILLRDTSGFHWFIDGQCSCTDYW 908



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 187/383 (48%), Gaps = 44/383 (11%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EA+ELF  +  + G +    T+ A+++ACI     +   +V   ++  G    +++ N +
Sbjct: 179 EAVELFFAM-LDSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCVFICNAL 237

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + ++ +CG +    RLF+EMPER++ S N +I+ ++    Y EAF    D +     C  
Sbjct: 238 MGLYCKCGFLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAF----DYFRGMQLCKG 293

Query: 232 R-----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED-- 284
                 + +T++ A AG      G+QLH+ ALK+G   ++ VS +LI  Y+KCGS  D  
Sbjct: 294 LKVDHFSLSTLLTACAGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVT 353

Query: 285 -----------------------------AQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
                                        A  VF++M ++  + +N ++AG + +     
Sbjct: 354 DLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCISYNAVLAGLSRNDDGSR 413

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           AL+L+ EM + GV++   T + II  C  L S + ++Q    +++ G   +    +ALVD
Sbjct: 414 ALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQIQGFVMKFGILSNSCIETALVD 473

Query: 376 FYSKWGRIEDARHVFDKMLCKNVIS--WNALIAGYGNHGRGEEAVELFEQMLLNG-MRPN 432
            Y++ GR+EDA  +F +   +N  +    ++I GY  +G+  EA+ LF      G +  +
Sbjct: 474 MYTRCGRMEDAEKIFYQRSLENDYTAMLTSMICGYARNGKLNEAISLFHSGQSEGAIVMD 533

Query: 433 HVTFLAVLSACSRSGLSERGWEI 455
            V   ++LS C   G  E G ++
Sbjct: 534 EVMSTSILSLCGSIGFHEMGMQM 556



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 153/300 (51%), Gaps = 5/300 (1%)

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            E D+++ N ++  +++ G++ DA ++F  +   N+VS   +I+G   S    EA  LF 
Sbjct: 126 LEEDIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFSKSDWEDEAVELFF 185

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            + +   +    TF  ++ A        +G Q+H   +K+G    VF+  AL+ +Y KCG
Sbjct: 186 AMLDSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCVFICNALMGLYCKCG 245

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSMII 339
            ++    +F+EM E+    WNT+I+        +EA D +  M+   G+K+DHF+ S ++
Sbjct: 246 FLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCKGLKVDHFSLSTLL 305

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
             C         +Q HA  ++ G    +  +S+L+ FY+K G   D   +F+ M  ++VI
Sbjct: 306 TACAGSVKPMKGQQLHALALKVGLESHLSVSSSLIGFYTKCGSANDVTDLFETMPIRDVI 365

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           +W  +I  Y   G  + AVE+F +M     + N +++ AVL+  SR+    R  E+F  M
Sbjct: 366 TWTGMITSYMEFGMLDSAVEVFNKM----PKRNCISYNAVLAGLSRNDDGSRALELFIEM 421



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 113/208 (54%), Gaps = 3/208 (1%)

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           + + +H+  LK+   +++F+  ALI  Y K G + DA  VF  +S    V +  +I+G++
Sbjct: 115 LARAVHAQFLKLE--EDIFLGNALISAYLKLGLVRDADKVFSGLSCPNVVSYTALISGFS 172

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
              + +EA++L++ M DSG++ + +TF  I+  C R    +   Q H  +V+ G    + 
Sbjct: 173 KSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQVHGIVVKLGLLSCVF 232

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM-LLN 427
             +AL+  Y K G ++    +F++M  +++ SWN +I+      + +EA + F  M L  
Sbjct: 233 ICNALMGLYCKCGFLDLVLRLFEEMPERDITSWNTVISSLVKEFKYDEAFDYFRGMQLCK 292

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEI 455
           G++ +H +   +L+AC+ S    +G ++
Sbjct: 293 GLKVDHFSLSTLLTACAGSVKPMKGQQL 320



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 94  SAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVF 153
           +A + S I     N +  EA+ LF   + EG   +      +++S C  +       ++ 
Sbjct: 498 TAMLTSMICGYARNGKLNEAISLFHSGQSEGAIVMDEVMSTSILSLCGSIGFHEMGMQMH 557

Query: 154 SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
            + L +G   +  + N  + M+ +C  M DA R+F+ M  +++VS N ++AG +      
Sbjct: 558 CHALKSGLITETGVGNATVSMYSKCWNMDDAVRVFNTMNMQDIVSWNGLVAGHVLHWQGD 617

Query: 214 EAFLLFLDLWEEFSDCG----SRTFATMIRASAGLEL 246
           +A    L +W++    G    S TFA +I A    EL
Sbjct: 618 KA----LGIWKKMEKAGIKPDSITFALIISAYKHTEL 650


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 212/620 (34%), Positives = 341/620 (55%), Gaps = 48/620 (7%)

Query: 132  TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
            T  +L   C    +++  K V ++ML  G + D+ + N +L ++++C +   A R+F+ M
Sbjct: 392  TLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFELM 451

Query: 192  PERNLVSCNMIIAGMIDSGDYLEAFLLFLDL-------WEEFSD---------------- 228
             E ++VS N++I+  + +GD  ++  +F  L       W    D                
Sbjct: 452  NEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQALEQLY 511

Query: 229  ----CGSR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
                CG+     TF+  +  S+ L L+ +G+QLH   LK GF  + F+  +L++MY KCG
Sbjct: 512  CMVECGTEFSVVTFSIALILSSSLSLVELGRQLHGMVLKFGFCRDGFIRSSLVEMYCKCG 571

Query: 281  SIEDAQGVFDEMS----------------EKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
             +++A  V  ++                 +   V W  +++GY  +G  E+ L  +  M 
Sbjct: 572  RMDNASIVLKDVPLDFLKNGNAGVTCKELKAGIVSWGLMVSGYVWNGKYEDGLKTFRLMV 631

Query: 325  DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
               V +D  T + II  C     LE  +  HA   + G  +D    S+L+D YSK G ++
Sbjct: 632  RELVVVDIRTVTTIISACANAGILEFGRHVHAYNHKIGHRIDAYVGSSLIDMYSKSGSLD 691

Query: 385  DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            DA  +F +    N++ W ++I+G   HG+G++A+ LFE+ML  G+ PN VTFL VL+AC 
Sbjct: 692  DAWTIFRQTNEPNIVFWTSMISGCALHGQGKQAICLFEEMLNQGIIPNEVTFLGVLNACC 751

Query: 445  RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
             +GL E G   F+ M   + I P   H   M++L GR G L E    I         ++W
Sbjct: 752  HAGLLEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTETKNFIFENGISHLTSVW 811

Query: 505  AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
             + L++CR++ N+E+GK+ +E L  + P     YV+L N+  S+ +  EAA V   + ++
Sbjct: 812  KSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRSLMHQR 871

Query: 565  GLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV 624
            G++  P  SWI++K Q H F+ GD+SH Q +EIY  +D ++  + + GY  + K ++ DV
Sbjct: 872  GIKKQPGQSWIQLKDQIHTFIMGDRSHPQDEEIYSYLDILIGRLKEIGYSFDVKLVMQDV 931

Query: 625  DEQEQRVL-SYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVV 683
            +E++  VL S+HSEKLAV FG+INT++ TP++I+++ RIC DCHN IK  + +  REI++
Sbjct: 932  EEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKYASQLLDREIIL 991

Query: 684  RDASRFHHFKDGMCSCGDYW 703
            RD  RFHHFK G CSCGDYW
Sbjct: 992  RDIHRFHHFKHGGCSCGDYW 1011



 Score =  139 bits (349), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 214/445 (48%), Gaps = 56/445 (12%)

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
           N +L ++V+   M  AR+LFDE+P+RN  +  ++I+G   +G     F LF ++  + + 
Sbjct: 328 NYLLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGSSEVVFKLFREMRAKGAC 387

Query: 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
               T +++ +  +    + +GK +H+  L+ G   +V +  +++D+Y KC   E A+ V
Sbjct: 388 PNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERV 447

Query: 289 FDEMSE-------------------------------KTTVGWNTIIAGYALHGYSEEAL 317
           F+ M+E                               K  V WNTI+ G    GY  +AL
Sbjct: 448 FELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQAL 507

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
           +  Y M + G +    TFS+ + + + L+ +E  +Q H  +++ GF  D    S+LV+ Y
Sbjct: 508 EQLYCMVECGTEFSVVTFSIALILSSSLSLVELGRQLHGMVLKFGFCRDGFIRSSLVEMY 567

Query: 378 SKWGRIEDARHVFD----------------KMLCKNVISWNALIAGYGNHGRGEEAVELF 421
            K GR+++A  V                  K L   ++SW  +++GY  +G+ E+ ++ F
Sbjct: 568 CKCGRMDNASIVLKDVPLDFLKNGNAGVTCKELKAGIVSWGLMVSGYVWNGKYEDGLKTF 627

Query: 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY--ACMIELL 479
             M+   +  +  T   ++SAC+ +G+ E G  +    + +HKI  R   Y  + +I++ 
Sbjct: 628 RLMVRELVVVDIRTVTTIISACANAGILEFGRHVH---AYNHKIGHRIDAYVGSSLIDMY 684

Query: 480 GREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY--GMEPEKLSN 537
            + G LD+A+ + R    +     W ++++ C ++G  +      E++   G+ P +++ 
Sbjct: 685 SKSGSLDDAWTIFRQTN-EPNIVFWTSMISGCALHGQGKQAICLFEEMLNQGIIPNEVT- 742

Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLR 562
           ++ +LN    +G L+E     R ++
Sbjct: 743 FLGVLNACCHAGLLEEGCRYFRMMK 767



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 98/172 (56%)

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LH+ ++K G    +  +  L+ +Y K  +++ A+ +FDE+ ++ T  W  +I+G++  G 
Sbjct: 311 LHALSVKNGSLQTLNSANYLLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGS 370

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
           SE    L+ EMR  G   + +T S + + C+   +L+  K  HA ++R+G   D+V  ++
Sbjct: 371 SEVVFKLFREMRAKGACPNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNS 430

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
           ++D Y K    E A  VF+ M   +V+SWN +I+ Y   G  E+++++F ++
Sbjct: 431 ILDLYLKCKVFEYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRL 482



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 86/208 (41%), Gaps = 38/208 (18%)

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414
           HA  V++G    + + + L+  Y K   ++ AR +FD++  +N  +W  LI+G+   G  
Sbjct: 312 HALSVKNGSLQTLNSANYLLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAGSS 371

Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACS-----RSGLSERGWEIFQSMSR-------- 461
           E   +LF +M   G  PN  T  ++   CS     + G     W +   +          
Sbjct: 372 EVVFKLFREMRAKGACPNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSI 431

Query: 462 -DHKIKPRAMHYA----------------CMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
            D  +K +   YA                 MI    R G ++++  + R  P+K   + W
Sbjct: 432 LDLYLKCKVFEYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVVS-W 490

Query: 505 AALLTACRVNGNLELG--KFAAEKLYGM 530
             +     V+G ++ G  + A E+LY M
Sbjct: 491 NTI-----VDGLMQFGYERQALEQLYCM 513


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 327/564 (57%), Gaps = 11/564 (1%)

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
           +++K++ + +L TGF     +  ++L   V  G M  AR++FDEM +  +   N +  G 
Sbjct: 25  KQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGY 84

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGF 262
           + +    E+ LL+    ++  D G R    T+  +++A + L   S G  LH+  +K GF
Sbjct: 85  VRNQLPFESLLLY----KKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGF 140

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYE 322
           G    V+  L+ MY K G +  A+ +F+ M  K  V WN  +A     G S  AL+ + +
Sbjct: 141 GCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNK 200

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M    V+ D FT   ++  C +L SLE  ++ +    +     +I+  +A +D + K G 
Sbjct: 201 MCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGN 260

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
            E AR +F++M  +NV+SW+ +I GY  +G   EA+ LF  M   G+RPN+VTFL VLSA
Sbjct: 261 TEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSA 320

Query: 443 CSRSGLSERGWEIFQSM--SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTT 500
           CS +GL   G   F  M  S D  ++PR  HYACM++LLGR GLL+EA+  I+  P +  
Sbjct: 321 CSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPD 380

Query: 501 KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560
             +W ALL AC V+ ++ LG+  A+ L    P+  S +V+L NIY ++GK     +V   
Sbjct: 381 TGIWGALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSK 440

Query: 561 LRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTL 620
           +R+ G + + A S +E + + H F  GD+SH Q+K IY K+D ++ +I K GYVP+  ++
Sbjct: 441 MRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSV 500

Query: 621 LPDVDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGR 679
             DV+ +E+   LS+HSEKLA+AFGLI      P++++++ R C DCH   K ++ +T  
Sbjct: 501 FHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTST 560

Query: 680 EIVVRDASRFHHFKDGMCSCGDYW 703
           EI++RD +RFHHF++G+CSC ++W
Sbjct: 561 EIIMRDKNRFHHFRNGVCSCKEFW 584



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 164/339 (48%), Gaps = 28/339 (8%)

Query: 89  QMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147
           +M KP   + + + K  V N+   E+L L++ +  + G      TY  ++ A   L    
Sbjct: 68  EMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMR-DLGVRPDEFTYPFVVKAISQLGDFS 126

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMI 207
               + ++++  GF     +   +++M+++ G +  A  LF+ M  ++LV+ N  +A  +
Sbjct: 127 CGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCV 186

Query: 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF 267
            +G+   A   F  +  +     S T  +M+ A   L  + +G++++  A K     N+ 
Sbjct: 187 QTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNII 246

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327
           V  A +DM+ KCG+ E A+ +F+EM ++  V W+T+I GYA++G S EAL L+  M++ G
Sbjct: 247 VENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEG 306

Query: 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG---FGLDIVAN-----------SAL 373
           ++ ++ TF  ++  C+           HAGLV  G   F L + +N           + +
Sbjct: 307 LRPNYVTFLGVLSACS-----------HAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACM 355

Query: 374 VDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNH 411
           VD   + G +E+A     KM  + +   W AL+     H
Sbjct: 356 VDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVH 394


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 188/524 (35%), Positives = 302/524 (57%), Gaps = 38/524 (7%)

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           +AFLL++ L     +    TF++++++ +       GK +H+  LK G G + +V+  L+
Sbjct: 111 QAFLLYVQLLSSQINPNEFTFSSILKSCS----TKSGKLIHTHVLKFGLGLDPYVATGLV 166

Query: 274 DMYSKCGSIEDAQGVFDEMSEKT-------------------------------TVGWNT 302
           D+Y+K G +  AQ VFD M E++                                V WN 
Sbjct: 167 DIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNV 226

Query: 303 IIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361
           +I GY+ HG+  +AL L+ ++  D   K D  T    +  C+++ +LE  +  H  +   
Sbjct: 227 MIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSS 286

Query: 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF 421
              L++   +AL+D YSK G +E+A  VF+    K++++WNA+I GY  HG  ++A+ LF
Sbjct: 287 RIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLF 346

Query: 422 EQML-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
           ++M  + G++P  +TF+  L AC+ +GL   G +IF+SM +++ IKP+  HY C++ LLG
Sbjct: 347 DEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLG 406

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540
           R G L  A+ +I+    +    +W+++L +C+++G   LGK  AE L G        YV+
Sbjct: 407 RAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVL 466

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRK 600
           L NIY   G  +  A+V   ++ KG+   P  S IE+  + H F +GD+ H+++KEIY  
Sbjct: 467 LSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTM 526

Query: 601 VDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQS 659
           + +M   I  HGYVP   T+L D++E E +R L  HSE+LA+A+GLI+T   +PL+I ++
Sbjct: 527 LRKMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYGLISTKPGSPLKIFKN 586

Query: 660 HRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            R+C DCH   KLI+ +TGR+IV+RD +RFHHF DG CSC D+W
Sbjct: 587 LRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 98/357 (27%), Positives = 164/357 (45%), Gaps = 70/357 (19%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+ +++ +C    S +  K + +++L  G   D Y+   ++ ++ + G ++ A+++FD M
Sbjct: 130 TFSSILKSC----STKSGKLIHTHVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDRM 185

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE-----------FSDCGSRTFATMI-- 238
           PER+LVS   +I      G+   A  LF  + E            +S  G  + A M+  
Sbjct: 186 PERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQ 245

Query: 239 ----RASAGLELISVGKQLHSC----ALKMGFGDNVFVS-----------CALIDMYSKC 279
                     + I+V   L +C    AL+ G   +VFV+            ALIDMYSKC
Sbjct: 246 KLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTALIDMYSKC 305

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSMI 338
           GS+E+A  VF++   K  V WN +I GYA+HGYS++AL L+ EM+  +G++    TF   
Sbjct: 306 GSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGITGLQPTDITFIGT 365

Query: 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
           ++ C           AHAGLV  G           +  +   G+        +  +   +
Sbjct: 366 LQAC-----------AHAGLVNEG-----------IQIFESMGQ--------EYGIKPKI 395

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
             +  L++  G  G+ + A E+ + M    M  + V + +VL +C   G    G EI
Sbjct: 396 EHYGCLVSLLGRAGQLKRAYEIIKNM---NMEADSVLWSSVLGSCKLHGEFMLGKEI 449



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 97/204 (47%), Gaps = 5/204 (2%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +AL LF+ L  +G       T  A +SAC  + ++   + +  ++ S+    ++ +   +
Sbjct: 239 DALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVKVCTAL 298

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG + +A  +F++ P +++V+ N +I G    G   +A  LF D  +  +    
Sbjct: 299 IDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLF-DEMQGITGLQP 357

Query: 232 R--TFATMIRASAGLELISVGKQL-HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288
              TF   ++A A   L++ G Q+  S   + G    +     L+ +  + G ++ A  +
Sbjct: 358 TDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYEI 417

Query: 289 FDEMS-EKTTVGWNTIIAGYALHG 311
              M+ E  +V W++++    LHG
Sbjct: 418 IKNMNMEADSVLWSSVLGSCKLHG 441



 Score = 43.9 bits (102), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 58/266 (21%), Positives = 117/266 (43%), Gaps = 28/266 (10%)

Query: 347 SLEHAKQAHAGLVRHGFGLDI---VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
           S++   Q HA ++RH   +     V N  L   Y+  G+I  +  +F + +  ++  + A
Sbjct: 39  SVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTA 98

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS-RSGLSERGWEIFQSMSRD 462
            I     +G  ++A  L+ Q+L + + PN  TF ++L +CS +SG       +   +  D
Sbjct: 99  AINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTKSGKLIHTHVLKFGLGLD 158

Query: 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
             +         ++++  + G +  A  +    P ++  +   A++T     GN+E    
Sbjct: 159 PYVA------TGLVDIYAKGGDVVSAQKVFDRMPERSLVSS-TAMITCYAKQGNVE---- 207

Query: 523 AAEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG---------LRMLPAC 572
           AA  L+    E+ + ++ V+++ Y+  G   +A  + + L   G         +  L AC
Sbjct: 208 AARALFDRMCERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSAC 267

Query: 573 SWI---EVKKQPHVFLSGDQSHVQTK 595
           S I   E  +  HVF++  +  +  K
Sbjct: 268 SQIGALETGRWIHVFVNSSRIRLNVK 293


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 211/593 (35%), Positives = 318/593 (53%), Gaps = 34/593 (5%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV--RCGMMIDARRLFDEMPERNLVSCNMI 202
           ++ E+K+  S ++  G   D     RV+      + G +  A  +FD++P  +    N I
Sbjct: 32  TMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTI 91

Query: 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
             G +          ++  +  +       T+  +IRA      I  GKQ+H+  LK GF
Sbjct: 92  FRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGF 151

Query: 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE-------- 314
           G + F    LI MY    S+E A+ VFD M ++  V W ++I GY+  G+ +        
Sbjct: 152 GADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFEL 211

Query: 315 -----------------------EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
                                  EA  L+  MR   V +D F  + ++  CT L +LE  
Sbjct: 212 MPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQG 271

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
           K  H  + + G  LD    + ++D Y K G +E A  VF+++  K + SWN +I G   H
Sbjct: 272 KWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMH 331

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471
           G+GE A+ELF++M    + P+ +TF+ VLSAC+ SGL E G   FQ M+    +KP   H
Sbjct: 332 GKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEH 391

Query: 472 YACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531
           + CM++LLGR GLL+EA  LI   P      +  AL+ ACR++GN ELG+   +K+  +E
Sbjct: 392 FGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELE 451

Query: 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSH 591
           P     YV+L N+Y S+G+ ++ A+V + +  +G++  P  S IE +     F++G ++H
Sbjct: 452 PHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAH 511

Query: 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSD 650
            Q KEIY K+D ++  I   GYVP+   +L D+DE+E +  L YHSEKLA+AFGL+ T  
Sbjct: 512 PQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKP 571

Query: 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              L+I ++ RIC DCH A KLI+ V  REI++RD +RFHHF+ G CSC DYW
Sbjct: 572 GETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 153/360 (42%), Gaps = 74/360 (20%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY  LI AC    +I E K++ +++L  GF  D +  N ++ M+V    +  ARR+FD M
Sbjct: 122 TYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNM 181

Query: 192 P-------------------------------ERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           P                               ERN VS N +IA  + S    EAF LF 
Sbjct: 182 PQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFD 241

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +  E         A+M+ A  GL  +  GK +H    K G   +  ++  +IDMY KCG
Sbjct: 242 RMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCG 301

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            +E A  VF+E+ +K    WN +I G A+HG  E A++L+ EM    V  D  TF  ++ 
Sbjct: 302 CLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLS 361

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-----LC 395
            C           AH+GLV                        E+ +H F  M     L 
Sbjct: 362 AC-----------AHSGLV------------------------EEGKHYFQYMTEVLGLK 386

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
             +  +  ++   G  G  EEA +L  +M +N   P+     A++ AC   G +E G +I
Sbjct: 387 PGMEHFGCMVDLLGRAGLLEEARKLINEMPVN---PDAGVLGALVGACRIHGNTELGEQI 443



 Score = 40.0 bits (92), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 5/104 (4%)

Query: 93  PSAGICS---QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV 149
           P  GI S    I  L ++ +   A+ELF+ +E E     G  T+  ++SAC     + E 
Sbjct: 314 PQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGI-TFVNVLSACAHSGLVEEG 372

Query: 150 KRVFSYMLST-GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192
           K  F YM    G +P +     ++ +  R G++ +AR+L +EMP
Sbjct: 373 KHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMP 416


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 221/625 (35%), Positives = 344/625 (55%), Gaps = 8/625 (1%)

Query: 84   SLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGL 143
            S+ +  ++K S    S I  L  N+   +A E F  +   G     + T  + +S+C  L
Sbjct: 443  SVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMP-SNFTLISTLSSCASL 501

Query: 144  RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
              I   +++    L  G + D+ + N +L ++   G   +  ++F  MPE + VS N +I
Sbjct: 502  GWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVI 561

Query: 204  AGMIDS-GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262
              + DS     +A   FL +          TF  ++ A + L L  V  Q+H+  LK   
Sbjct: 562  GALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCL 621

Query: 263  GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE-KTTVGWNTIIAGYALHGYSEEALDLYY 321
             D+  +  AL+  Y KCG + + + +F  MSE +  V WN++I+GY  +    +A+DL +
Sbjct: 622  SDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVW 681

Query: 322  EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
             M   G ++D FTF+ I+  C  +A+LE   + HA  +R     D+V  SALVD YSK G
Sbjct: 682  FMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCG 741

Query: 382  RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
            RI+ A   F+ M  +NV SWN++I+GY  HG GE+A++LF +M+L+G  P+HVTF+ VLS
Sbjct: 742  RIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLS 801

Query: 442  ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501
            ACS  G  E G+E F+SMS  +++ PR  H++CM++LLGR G LDE    I   P K   
Sbjct: 802  ACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNV 861

Query: 502  NMWAALLTA-CRVNG-NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
             +W  +L A CR NG N ELG+ AAE L  +EP+   NYV+L N+Y S  K ++ A+   
Sbjct: 862  LIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKART 921

Query: 560  TLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKT 619
             ++   ++    CSW+ +K   HVF++GD+ H +   IY K+  +  ++   GY+P+ K 
Sbjct: 922  AMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKY 981

Query: 620  LLPD-VDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTG 678
             L D   E ++ +LSYHSEK+AVAF L   S   P++I+++ R+C DCH+A   I+ +  
Sbjct: 982  ALFDLELENKEELLSYHSEKIAVAFVLTRQSA-LPIRIMKNLRVCGDCHSAFGYISKIIF 1040

Query: 679  REI-VVRDASRFHHFKDGMCSCGDY 702
              + +    S     +   C CGD+
Sbjct: 1041 FFLKMAMKPSNNIWIRRQQCPCGDW 1065



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 136/477 (28%), Positives = 231/477 (48%), Gaps = 60/477 (12%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S T+++LI+   G     E + +    +  GF  +L++ N ++ ++VR G +  A++LFD
Sbjct: 71  SETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFD 130

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA--SAGLELI 247
           EM  RNLV+   +I+G   +G   EA   F D+           F + +RA   +G    
Sbjct: 131 EMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSGC 190

Query: 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKC-GSIEDAQGVFDEMSEKTTVGWNTIIAG 306
            +G Q+H    K  +G +V V   LI MY  C  S  DA+ VFD +  + ++ WN+II+ 
Sbjct: 191 KLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISV 250

Query: 307 YALHGYSEEALDLYYEMRDSGV----KMDHFTF-SMIIRICTRLA-SLEHAKQAHAGLVR 360
           Y+  G +  A DL+  M+  G+    K + +TF S+I   C+ +   L   +Q  A + +
Sbjct: 251 YSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEK 310

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVEL 420
            GF  D+  +SALV  ++++G  +DA+++F++M  +NV+S N L+ G     +GE A ++
Sbjct: 311 SGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKV 370

Query: 421 FEQML-LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479
           F +M  L G+  N  +++ +LSA S   + E G           + K R +H   +    
Sbjct: 371 FHEMKDLVGI--NSDSYVVLLSAFSEFSVLEEG-----------RRKGREVHAHVI---- 413

Query: 480 GREGLLDEAFALIRGAPFKTTKNMWA---ALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536
            R GL D   A+  G       NM+A   A+  AC V    EL          M  +   
Sbjct: 414 -RTGLNDNKVAIGNG-----LVNMYAKSGAIADACSV---FEL----------MVEKDSV 454

Query: 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKG--------LRMLPACS---WIEVKKQPH 582
           ++  L++  + +   ++AAE    +RR G        +  L +C+   WI + +Q H
Sbjct: 455 SWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIH 511



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 185/354 (52%), Gaps = 12/354 (3%)

Query: 113 ALELFEILEFEG---GFDVGSSTYDALIS-ACIGLR-SIREVKRVFSYMLSTGFEPDLYM 167
           A +LF  ++ EG    F     T+ +LI+ AC  +   +  ++++ + +  +GF  DLY+
Sbjct: 260 AYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQDLYV 319

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            + ++    R G+  DA+ +F++M  RN+VS N ++ G++       A  +F ++ ++  
Sbjct: 320 SSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM-KDLV 378

Query: 228 DCGSRTFATMIRASAGLELIS----VGKQLHSCALKMGFGDN-VFVSCALIDMYSKCGSI 282
              S ++  ++ A +   ++      G+++H+  ++ G  DN V +   L++MY+K G+I
Sbjct: 379 GINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAI 438

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
            DA  VF+ M EK +V WN++I+G   +  SE+A + ++ MR +G    +FT    +  C
Sbjct: 439 ADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSC 498

Query: 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
             L  +   +Q H   ++ G   D+  ++AL+  Y++ G   +   VF  M   + +SWN
Sbjct: 499 ASLGWIMLGEQIHCDGLKLGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWN 558

Query: 403 ALIAGYGN-HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           ++I    +      +AV+ F QM+  G   + VTF+ +LSA S   L E   +I
Sbjct: 559 SVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQI 612


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 204/591 (34%), Positives = 328/591 (55%), Gaps = 35/591 (5%)

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER-NLVSCNMIIAGM 206
           E+K++ + ML +G   D Y   + L   +       A  +F    +R +    N++I G+
Sbjct: 26  ELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDRPDTFLWNLMIRGL 85

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV 266
             S     + LL+  +    +   + TF  +++A + L       Q+H+   K G+G ++
Sbjct: 86  SCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDI 145

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWN------------------------- 301
           +   +LI+ Y+  G+ + A  +FD + E   V WN                         
Sbjct: 146 YAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEK 205

Query: 302 -------TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
                  T+I+GY   G ++EAL L++EM++S V  D+ + +  +  C++L +LE  K  
Sbjct: 206 NNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWI 265

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414
           H+   +    +D V    L+D Y+K G +E+A  VF  M  K+V  W ALI+GY  HG G
Sbjct: 266 HSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLG 325

Query: 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474
            EA+  F +M   G++PN +TF AVL+ACS +GL E G  +F ++ RD+ +KP   HY C
Sbjct: 326 REAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGC 385

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534
           M++LLGR GLL+EA   I+  P K    +W +LL AC+++ N+ELG+   E L  M+   
Sbjct: 386 MVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMDSNH 445

Query: 535 LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQT 594
              YV + NI+    K  +AAE  R +R +G+  +P CS I ++   H FL+GD+SH + 
Sbjct: 446 GGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRSHAEI 505

Query: 595 KEIYRKVDRMMLEISKHGYVPEEKTLLPDV--DEQEQRVLSYHSEKLAVAFGLINTSDWT 652
           +EI  K   +  ++ ++GYVPE + +L D+  DE+++ ++  HSEKLA+ +GL+ T   T
Sbjct: 506 QEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHSEKLAITYGLMKTKPGT 565

Query: 653 PLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            ++I+++ R+C DCH  + LI+ +  R+IV+RD +RFHHFKDG CSCGDYW
Sbjct: 566 TIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDGKCSCGDYW 616


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 205/607 (33%), Positives = 342/607 (56%), Gaps = 38/607 (6%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA--RRLFDEMP 192
           +LIS      ++ ++K++  ++L  G +   Y+  +++    + G+ +D   RR+ + + 
Sbjct: 52  SLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQ 111

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
            RN      +I G    G + EA  ++  + +E     S TF+ +++A   +  +++G+Q
Sbjct: 112 FRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGRQ 171

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
            H+   ++     V+V   +IDMY KCGSI  A+ VFDEM E+  + W  +IA YA  G 
Sbjct: 172 FHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGN 231

Query: 313 SEEALDL------------------------------YYE-MRDSGVKMDHFTFSMIIRI 341
            E A DL                              Y++ M  SG++ D  T +  I  
Sbjct: 232 MESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISA 291

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLD--IVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
           C +L + ++A +A     + G+     +V  SAL+D YSK G +E+A +VF  M  KNV 
Sbjct: 292 CAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVF 351

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLL-NGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           S++++I G   HGR +EA++LF  M+    ++PN VTF+  L+ACS SGL ++G ++F S
Sbjct: 352 SYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFAS 411

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M +   ++P   HY CM++LLGR G L EA  LI+    +    +W ALL ACR++ N +
Sbjct: 412 MYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPD 471

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           + + AAE L+ +EP+ + NY++L N+Y+S+G       V + ++ KGL+  PA SW+  K
Sbjct: 472 IAEIAAEHLFELEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDK 531

Query: 579 K-QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHS 636
             Q H F  G+ +H  +K+I  K++ ++  ++  GY P+  ++  DV +  +R +L  H+
Sbjct: 532 NGQMHKFFPGNLNHPMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHT 591

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           EKLA+AF L+ T+    ++I+++ R+C DCH  ++L + VTGR I++RD  RFHHF+ G 
Sbjct: 592 EKLALAFSLLTTNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGA 651

Query: 697 CSCGDYW 703
           CSCGD+W
Sbjct: 652 CSCGDFW 658


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 194/573 (33%), Positives = 330/573 (57%), Gaps = 42/573 (7%)

Query: 133 YDALISACIGLRSIREVKRVFSYMLSTG-FEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           ++++I A    +   E   ++  M+  G  E D+++   ++ M+ + G +  AR +FD+M
Sbjct: 117 WNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKM 176

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
           P+R++V+ N +IAG+  S D   A  +F    ++  D    ++ TM+   AG        
Sbjct: 177 PKRDVVAWNAMIAGLSQSEDPYVARRVF----DQMVDQDDVSWGTMM---AG-------- 221

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
                                   Y+  G   +   +FD+M +   V WN IIA Y  +G
Sbjct: 222 ------------------------YAHNGCFVEVLELFDKM-KLGNVTWNVIIAAYMQNG 256

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
           +++EA+  +++MR      +  TF  ++     LA+       HA +++ GF  + +  +
Sbjct: 257 HAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGN 316

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           +L+D Y+K G+++ +  +F++M  K+ +SWNA+++GY  HG G+ A+ LF  M  + ++ 
Sbjct: 317 SLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQI 376

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           + V+F++VLSAC  +GL E G +IF SMS  + IKP   HYACM++LLGR GL DE    
Sbjct: 377 DSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGF 436

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           I+  P +    +W ALL +CR++ N++LG+ A + L  +EP   +++VVL +IY  SG+ 
Sbjct: 437 IKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRW 496

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
            +A +    +   GL+  P CSW+E+K + H F  GD+SH Q + ++   + ++ ++ K 
Sbjct: 497 ADAGKARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKI 556

Query: 612 GYVPEEKTLLPDVDEQEQRVLSY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           GYVP+   +L +V+E+++ +  Y HSE+LA+ F L+NT   + +QIV++ R+C DCH   
Sbjct: 557 GYVPDRSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTT 616

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           K I+ +T R I+VRDA+RFHHF+DG+CSC DYW
Sbjct: 617 KFISKITTRRIIVRDATRFHHFEDGICSCNDYW 649



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 174/380 (45%), Gaps = 39/380 (10%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYM-- 156
           S I     +K+Y EALE++  +  +GG +        L+     +  ++  + VF  M  
Sbjct: 119 SMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPK 178

Query: 157 ------------LSTGFEPDLYMRNRV---------------LLMHVRCGMMIDARRLFD 189
                       LS   +P  Y+  RV               +  +   G  ++   LFD
Sbjct: 179 RDVVAWNAMIAGLSQSEDP--YVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFD 236

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
           +M   N V+ N+IIA  + +G   EA   F  +  E     S TF +++ A+A L     
Sbjct: 237 KMKLGN-VTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFRE 295

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G   H+C ++MGF  N  V  +LIDMY+KCG ++ ++ +F+EM  K TV WN +++GYA+
Sbjct: 296 GMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAV 355

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA-HAGLVRHGFGLDIV 368
           HG+ + A+ L+  M++S V++D  +F  ++  C     +E  ++  H+   ++    D+ 
Sbjct: 356 HGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLE 415

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAG---YGNHGRGEEAVELFEQM 424
             + +VD   + G  ++       M  + +   W AL+     + N   GE A++   + 
Sbjct: 416 HYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVK- 474

Query: 425 LLNGMRPNHVTFLAVLSACS 444
            L    P H   L+ + A S
Sbjct: 475 -LEPRNPAHFVVLSSIYAQS 493



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 86/376 (22%), Positives = 171/376 (45%), Gaps = 44/376 (11%)

Query: 225 EFSDCGSRTFATMI---RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           EF    S T+   +   R  +  + ++   Q+H+  +  GF  +  ++  LI++YS    
Sbjct: 40  EFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSIT-HLINLYSLFHK 98

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMDHFTFSMIIR 340
            + A+ VFD     + + WN++I  Y       EAL++YY M +  G++ D F  + ++ 
Sbjct: 99  CDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVD 158

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
           + +++  L+ A++    + +     D+VA +A++   S+      AR VFD+M+ ++ +S
Sbjct: 159 MYSKMGDLKRAREVFDKMPKR----DVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVS 214

Query: 401 WNALIAGY------------------GN------------HGRGEEAVELFEQMLLNGMR 430
           W  ++AGY                  GN            +G  +EA+  F QM L    
Sbjct: 215 WGTMMAGYAHNGCFVEVLELFDKMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFH 274

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           PN VTF++VL A +       G   F +           +    +I++  + G LD +  
Sbjct: 275 PNSVTFVSVLPAAAYLAAFREGMA-FHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEK 333

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLE--LGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
           L      K T + W A+L+   V+G+ +  +  F+  +   ++ + +S +V +L+    +
Sbjct: 334 LFNEMDHKDTVS-WNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVS-FVSVLSACRHA 391

Query: 549 GKLKEAAEVIRTLRRK 564
           G ++E  ++  ++  K
Sbjct: 392 GLVEEGRKIFHSMSDK 407


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1134

 Score =  369 bits (948), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 217/612 (35%), Positives = 348/612 (56%), Gaps = 20/612 (3%)

Query: 105  VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
            VLN     +L LF  +  +G +     T+   + AC  L ++ +  ++  + L  GFE  
Sbjct: 446  VLNGDLNGSLSLFTEMGRQGIYP-NEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMM 504

Query: 165  LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
            + + N ++ M+ +CG + +A ++F  M  R+L+S N +IAG + +G    A   F  + E
Sbjct: 505  VEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQE 564

Query: 225  ----EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF--GDNVFVSCALIDMYSK 278
                E  D    T  ++++A +   +I  GKQ+H   ++ GF    +  ++ +L+D+Y K
Sbjct: 565  AKIKERPD--EFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVK 622

Query: 279  CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            CG++  A+  FD++ EKT + W+++I GYA  G   EA+ L+  +++   ++D F  S I
Sbjct: 623  CGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSI 682

Query: 339  IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
            I +    A L+  KQ  A +V+   GL+   +++LVD Y K G +++A   F +M  K+V
Sbjct: 683  IGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDV 742

Query: 399  ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
            ISW  +I GYG HG G++AV +F +ML + + P+ V +LAVLSACS SG+ + G E+F  
Sbjct: 743  ISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSK 802

Query: 459  MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
            +     IKPR  HYAC+++LLGR G L EA  L+   P K    +W  LL+ CRV+G++E
Sbjct: 803  LLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIE 862

Query: 519  LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
            LGK   + L  ++ +  +NYV++ N+Y  +G   E          KGL+     SW+E++
Sbjct: 863  LGKEVGKILLRIDGKNPANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIE 922

Query: 579  KQPHVFLSGDQSHVQT---KEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSY 634
            ++ H F SG+ SH  T   +E  ++V+R + E  + GYV   K  L D+ DE ++  L  
Sbjct: 923  REVHFFRSGEDSHPLTLVIQETLKEVERRLRE--ELGYVYGLKHELHDIDDESKEENLRA 980

Query: 635  HSEKLAVAFGL----INTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFH 690
            HSEKLA+   L    +N    T +++ ++ R+C DCH  IK ++ +T    VVRDA RFH
Sbjct: 981  HSEKLAIGLALATGGLNQKGKT-IRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFH 1039

Query: 691  HFKDGMCSCGDY 702
             F+DG CSCGDY
Sbjct: 1040 SFEDGCCSCGDY 1051



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/414 (29%), Positives = 212/414 (51%), Gaps = 16/414 (3%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           +L   N ++ M+ +C   + A ++FD MPERN+VS   +++G + +GD   +  LF ++ 
Sbjct: 403 NLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMG 462

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
            +       TF+T ++A   L  +  G Q+H   LK+GF   V V  +L+DMYSKCG I 
Sbjct: 463 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 522

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK--MDHFTFSMIIRI 341
           +A+ VF  M  ++ + WN +IAGY   GY   AL  +  M+++ +K   D FT + +++ 
Sbjct: 523 EAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKA 582

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVA--NSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
           C+    +   KQ H  LVR GF     A    +LVD Y K G +  AR  FD++  K +I
Sbjct: 583 CSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMI 642

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           SW++LI GY   G   EA+ LF+++     + +     +++   +   L ++G ++ Q++
Sbjct: 643 SWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQM-QAL 701

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
                          ++++  + GL+DEA         K   + W  ++T    +G   L
Sbjct: 702 VVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVIS-WTVMITGYGKHG---L 757

Query: 520 GKFAAEKL-----YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVI-RTLRRKGLR 567
           GK A         + +EP+++  Y+ +L+  + SG +KE  E+  + L  +G++
Sbjct: 758 GKKAVSIFNKMLRHNIEPDEVC-YLAVLSACSHSGMIKEGEELFSKLLETQGIK 810



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 113/203 (55%), Gaps = 2/203 (0%)

Query: 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY 320
           G G N+  S  LIDMY KC     A  VFD M E+  V W  +++G+ L+G    +L L+
Sbjct: 399 GSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLF 458

Query: 321 YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380
            EM   G+  + FTFS  ++ C  L +LE   Q H   ++ GF + +   ++LVD YSK 
Sbjct: 459 TEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKC 518

Query: 381 GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM--RPNHVTFLA 438
           GRI +A  VF  M+ +++ISWNA+IAGY + G G  A+  F  M    +  RP+  T  +
Sbjct: 519 GRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTS 578

Query: 439 VLSACSRSGLSERGWEIFQSMSR 461
           +L ACS +G+   G +I   + R
Sbjct: 579 LLKACSSTGMIYAGKQIHGFLVR 601


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 203/574 (35%), Positives = 318/574 (55%), Gaps = 41/574 (7%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           EP++   N ++  +++  M+ +A  LF+ MP RN +S   +IAG   +G   +A +    
Sbjct: 349 EPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQA 408

Query: 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGS 281
           L  +       +  +   A + +E +  GKQ+HS A+K G   N +V  ALI +Y K  S
Sbjct: 409 LHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRS 468

Query: 282 IEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341
           I   + +FD M+ K TV +N+ ++    +   +EA D++  M    V     +++ II  
Sbjct: 469 IGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDV----VSWTTIISA 524

Query: 342 CTR-----------------------------------LASLEHAKQAHAGLVRHGFGLD 366
           C +                                   L + +  +Q H   ++ G    
Sbjct: 525 CAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSG 584

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +V  +ALV  Y K     D+  VFD M  +++ +WN +I GY  HG G EA+ +++ M+ 
Sbjct: 585 LVVANALVSMYFKCSS-ADSLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVS 643

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
            G+ PN VTF+ +L ACS SGL + G + F+SMS D+ + P   HYACM++LLGR G + 
Sbjct: 644 AGVLPNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQ 703

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546
            A   I   P +    +W+ALL AC+++ N+E+G+ AAEKL+ +EP    NYV+L NIY+
Sbjct: 704 GAEHFIYDMPIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYS 763

Query: 547 SSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMML 606
           S G   E A+V + ++ +G+   P CSW+++K + H F++GD+ H Q + IY  +  +  
Sbjct: 764 SQGMWDEVAKVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYT 823

Query: 607 EISKHGYVPEEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCD 665
            +   GYVP+   +L D+D EQ++  L YHSEKLAVA+GL+ T    P+QI+++ RIC D
Sbjct: 824 LLKATGYVPDTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGD 883

Query: 666 CHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSC 699
           CH  IK ++ VT REI VRD +RFHHF++G CSC
Sbjct: 884 CHTFIKFVSSVTKREIDVRDGNRFHHFRNGSCSC 917



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 145/323 (44%), Gaps = 36/323 (11%)

Query: 98  CSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           CS IE L   K+          L  + G    S   +ALI+     RSI  V+++F  M 
Sbjct: 428 CSNIEALETGKQVHS-------LAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMT 480

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
                 D    N  +   V+  +  +AR +F+ MP  ++VS   II+    +    EA  
Sbjct: 481 VK----DTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVE 536

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYS 277
           +F  +  E           ++  S  L    +G+Q+H+ A+K+G    + V+ AL+ MY 
Sbjct: 537 IFRSMLHERELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYF 596

Query: 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337
           KC S  D+  VFD M E+    WNTII GYA HG   EA+ +Y  M  +GV  +  TF  
Sbjct: 597 KCSS-ADSLKVFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVG 655

Query: 338 IIRICTRLASLEHAKQAHAGLVRHG----------FGLDIVAN--SALVDFYSKWGRIED 385
           ++  C+           H+GLV  G          +GL  +    + +VD   + G ++ 
Sbjct: 656 LLHACS-----------HSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQG 704

Query: 386 ARH-VFDKMLCKNVISWNALIAG 407
           A H ++D  +  + + W+AL+  
Sbjct: 705 AEHFIYDMPIEPDSVIWSALLGA 727



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 172/364 (47%), Gaps = 22/364 (6%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   VL +++  A ++F  +  EG          +++SA   L     ++ +   +  TG
Sbjct: 195 ISGYVLIEQHGRAWDMFRTMLCEG-MTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTG 253

Query: 161 FEPDLYMRNRVLLMHVRCGMMID-ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           FE D+ +   +L  + +   M+D A + F+ M  RN  + + IIA +  +G   +AF ++
Sbjct: 254 FERDVVVGTAILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVY 313

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGK----QLHSCALKMGFGDNVFVSCALIDM 275
               +      SRT  +M+   A    I   K    Q+H          NV    A+I  
Sbjct: 314 QR--DPLKSVPSRT--SMLTGLARYGRIDDAKILFDQIHE--------PNVVSWNAMITG 361

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           Y +   +++A+ +F+ M  + T+ W  +IAGYA +G SE+AL     +   G+     + 
Sbjct: 362 YMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSL 421

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
           +     C+ + +LE  KQ H+  V+ G   +    +AL+  Y K+  I   R +FD+M  
Sbjct: 422 TSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTV 481

Query: 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           K+ +S+N+ ++    +   +EA ++F  M      P+ V++  ++SAC+++       EI
Sbjct: 482 KDTVSYNSFMSALVQNNLFDEARDVFNNM----PSPDVVSWTTIISACAQADQGNEAVEI 537

Query: 456 FQSM 459
           F+SM
Sbjct: 538 FRSM 541



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 113/480 (23%), Positives = 208/480 (43%), Gaps = 63/480 (13%)

Query: 109 RYREALELFEILEFEGGFDVGSST-YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167
           R R+A  +F+      G  V ++  ++A+++  +    I   +++F  M S     D+  
Sbjct: 110 RVRDARRVFD------GMGVRNTVAWNAMVTCYVQNGDITLARKLFDAMPSR----DVSS 159

Query: 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227
            N +L  +    +M +AR LF+ MPERN VS  ++I+G +    +  A+ +F  +  E  
Sbjct: 160 WNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLCEGM 219

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK-CGSIEDAQ 286
                   +++ A   L    + + +H    K GF  +V V  A+++ Y+K    ++ A 
Sbjct: 220 TPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAV 279

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
             F+ M+ +    W+TIIA  +  G  ++A  +Y   RD    +   T SM+  +  R  
Sbjct: 280 KFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVY--QRDPLKSVPSRT-SMLTGLA-RYG 335

Query: 347 SLEHAK----QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWN 402
            ++ AK    Q H          ++V+ +A++  Y +   +++A  +F++M  +N ISW 
Sbjct: 336 RIDDAKILFDQIHEP--------NVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWA 387

Query: 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI------- 455
            +IAGY  +GR E+A+   + +   GM P+  +  +   ACS     E G ++       
Sbjct: 388 GMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHSLAVKA 447

Query: 456 ------------------FQSMSRDHKIKPR-----AMHYACMIELLGREGLLDEAFALI 492
                             ++S+    +I  R      + Y   +  L +  L DEA  + 
Sbjct: 448 GCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVF 507

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIYNSSGKL 551
              P     + W  +++AC      + G  A E    M  E+ L N  +L  +   SG L
Sbjct: 508 NNMPSPDVVS-WTTIISAC---AQADQGNEAVEIFRSMLHERELPNPPILTILLGLSGNL 563



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 89/419 (21%), Positives = 163/419 (38%), Gaps = 119/419 (28%)

Query: 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
           R G + +AR +FD MP R++++ N +I    ++G                 D G R+ A 
Sbjct: 45  RLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNG---------------MPDAG-RSLAD 88

Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT 296
            I                        G N+     L+  Y++ G + DA+ VFD M  + 
Sbjct: 89  AIS-----------------------GGNLRTGTILLSGYARAGRVRDARRVFDGMGVRN 125

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356
           TV WN ++  Y  +G    A  L+  M                                 
Sbjct: 126 TVAWNAMVTCYVQNGDITLARKLFDAMPSR------------------------------ 155

Query: 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY---GNHGR 413
                    D+ + + ++  Y     +E+AR++F++M  +N +SW  +I+GY     HGR
Sbjct: 156 ---------DVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGR 206

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSAC---SRSGLSER----------------GWE 454
              A ++F  ML  GM P     ++VLSA     + G+ E                 G  
Sbjct: 207 ---AWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTA 263

Query: 455 IFQSMSRDHKIKPRAMHY------------ACMIELLGREGLLDEAFALIRGAPFKTTKN 502
           I    ++D  +   A+ +            + +I  L + G +D+AFA+ +  P K+  +
Sbjct: 264 ILNGYTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPS 323

Query: 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
              ++LT     G ++  K   ++++  EP  +S +  ++  Y  +  + EA ++   +
Sbjct: 324 R-TSMLTGLARYGRIDDAKILFDQIH--EPNVVS-WNAMITGYMQNEMVDEAEDLFNRM 378



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/304 (23%), Positives = 137/304 (45%), Gaps = 21/304 (6%)

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
           A I    + G + +A+ VFD M  +  + WN++I  Y  +G  +    L   +    ++ 
Sbjct: 38  ARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLR- 96

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGL-VRHGFGLDIVANSALVDFYSKWGRIEDARHV 389
              T ++++    R   +  A++   G+ VR     + VA +A+V  Y + G I  AR +
Sbjct: 97  ---TGTILLSGYARAGRVRDARRVFDGMGVR-----NTVAWNAMVTCYVQNGDITLARKL 148

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449
           FD M  ++V SWN ++ GY +    EEA  LFE+M       N V++  ++S        
Sbjct: 149 FDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERM----PERNGVSWTVMISGYVLIEQH 204

Query: 450 ERGWEIFQSMSRDHKI--KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
            R W++F++M  +     +P  +     +  LG+ G+L+    L+    F+    +  A+
Sbjct: 205 GRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAI 264

Query: 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
           L     + N+     A +   GM       +  ++   + +G++ +A  V    +R  L+
Sbjct: 265 LNGYTKDVNML--DSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAV---YQRDPLK 319

Query: 568 MLPA 571
            +P+
Sbjct: 320 SVPS 323



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 10/142 (7%)

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
           A SA +    + GR+ +AR VFD M  +++I+WN++I  Y N+G  +    L + +    
Sbjct: 35  AQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSLADAISGGN 94

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           +R    T   +LS  +R+G       +F  M   + +   AM   C ++     G +  A
Sbjct: 95  LR----TGTILLSGYARAGRVRDARRVFDGMGVRNTVAWNAM-VTCYVQ----NGDITLA 145

Query: 489 FALIRGAPFKTTKNMWAALLTA 510
             L    P +   + W  +LT 
Sbjct: 146 RKLFDAMPSRDVSS-WNTMLTG 166


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 205/592 (34%), Positives = 330/592 (55%), Gaps = 36/592 (6%)

Query: 148 EVKRVFSYMLSTGFEPDLYMRNRVL---LMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           E+K++ + ML TG   D Y   + L   +       +  A+ +FD     +    N++I 
Sbjct: 58  ELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIR 117

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
           G   S +   + LL+  +    +   + TF ++++A + L  +    Q+H+   K+G+ +
Sbjct: 118 GFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYEN 177

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFD-------------------------------EMS 293
           +V+   +LI+ Y+  G+ + A  +FD                               +M 
Sbjct: 178 DVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMV 237

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
           EK  + W T+I+GY   G  +EAL L++EM++S V+ D+ + +  +  C +L +LE  K 
Sbjct: 238 EKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKW 297

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
            H+ L +    +D V    L+D Y+K G + +A  VF  +  K+V +W ALI+GY  HG 
Sbjct: 298 IHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGH 357

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
           G EA+  F +M   G++PN +TF  VL+ACS +GL E G  IF +M RD+ +KP   HY 
Sbjct: 358 GREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYG 417

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533
           C+++LL R GLLDEA   I+  P K    +W ALL ACR++ N+ELG+   E L  ++P 
Sbjct: 418 CVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPY 477

Query: 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQ 593
               YV   NI+    K  +AAE  R ++ +G+  +P CS I ++   H FL+GD+SH +
Sbjct: 478 HGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPE 537

Query: 594 TKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR--VLSYHSEKLAVAFGLINTSDW 651
            ++I  K   M  ++ ++GYVPE + +L D+ + ++R  ++  HSEKLA+ +GLI T   
Sbjct: 538 IEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAITYGLIKTKPG 597

Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T ++I+++ R+C DCH   KLI+ +  R+IV+RD +RFHHF+DG CSCGDYW
Sbjct: 598 TTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 649


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 216/628 (34%), Positives = 341/628 (54%), Gaps = 60/628 (9%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           +++ L+S  I  R I E + VF  M     E ++     ++  +++ GM+ +A  LF  M
Sbjct: 81  SWNGLVSGYIKNRMIVEARNVFELMP----ERNVVSWTAMVKGYMQEGMVGEAESLFWRM 136

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLF-----------------------LD----LWE 224
           PERN VS  ++  G+ID G   +A  L+                       +D    +++
Sbjct: 137 PERNEVSWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFD 196

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSC----------ALKMGF--------GDNV 266
           E  +    T+ TMI        + V ++L             ++ +G+         +  
Sbjct: 197 EMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEF 256

Query: 267 F--------VSC-ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL 317
           F        ++C A+I  + + G I  A+ VFD M ++    W  +I  Y   G+  EAL
Sbjct: 257 FEVMPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEAL 316

Query: 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
           DL+ +M+  GV+    +   I+ +C  LASL++ +Q HA LVR  F  D+   S L+  Y
Sbjct: 317 DLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMY 376

Query: 378 SKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437
            K G +  A+ VFD+   K++I WN++I+GY +HG GEEA+++F +M  +G  PN VT +
Sbjct: 377 VKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLI 436

Query: 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF 497
           A+L+ACS +G  E G EIF+SM     + P   HY+C +++LGR G +D+A  LI     
Sbjct: 437 AILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTI 496

Query: 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557
           K    +W ALL AC+ +  L+L + AA+KL+  EP+    YV+L +I  S  K  + A V
Sbjct: 497 KPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVV 556

Query: 558 IRTLRRKGLRMLPACSWIEVKKQPHVFLSGD-QSHVQTKEIYRKVDRMMLEISKHGYVPE 616
            + +R   +   P CSWIEV K+ H+F  G  ++H +   I   +++    + + GY P+
Sbjct: 557 RKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPD 616

Query: 617 EKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAM 675
              +L DVDE+E+   LS HSE+LAVA+GL+   +  P++++++ R+C DCH AIKLI+ 
Sbjct: 617 CSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISK 676

Query: 676 VTGREIVVRDASRFHHFKDGMCSCGDYW 703
           VT REI++RDA+RFHHF +G CSC DYW
Sbjct: 677 VTEREIILRDANRFHHFNNGECSCRDYW 704



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 118/509 (23%), Positives = 226/509 (44%), Gaps = 64/509 (12%)

Query: 94  SAGI-CS-QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKR 151
           S G+ CS +I +L    +  EA + F+ L+F+    +GS  +++++S        +E ++
Sbjct: 15  STGVNCSFEISRLSRIGKINEARKFFDSLQFKA---IGS--WNSIVSGYFSNGLPKEARQ 69

Query: 152 VFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGD 211
           +F  M     E ++   N ++  +++  M+++AR +F+ MPERN+VS   ++ G +  G 
Sbjct: 70  LFDEM----SERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGM 125

Query: 212 YLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCA 271
             EA  LF  + E      +  F  +I        I   ++L+     M    +V  S  
Sbjct: 126 VGEAESLFWRMPERNEVSWTVMFGGLIDDGR----IDKARKLYD----MMPVKDVVASTN 177

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
           +I    + G +++A+ +FDEM E+  V W T+I GY  +   + A  L+  M +      
Sbjct: 178 MIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEK----T 233

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
             +++ ++   T    +E A++    +        ++A +A++  + + G I  AR VFD
Sbjct: 234 EVSWTSMLLGYTLSGRIEDAEEFFEVMPMK----PVIACNAMIVGFGEVGEISKARRVFD 289

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
            M  ++  +W  +I  Y   G   EA++LF QM   G+RP+  + +++LS C+     + 
Sbjct: 290 LMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQY 349

Query: 452 GWEIFQSMSR------------------------------DHKIKPRAMHYACMIELLGR 481
           G ++   + R                              D       + +  +I     
Sbjct: 350 GRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYAS 409

Query: 482 EGLLDEAFALIRGAPFKTT---KNMWAALLTACRVNGNLELGKFAAEKL---YGMEPEKL 535
            GL +EA  +    P   T   K    A+LTAC   G LE G    E +   + + P  +
Sbjct: 410 HGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTP-TV 468

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
            +Y   +++   +G++ +A E+I ++  K
Sbjct: 469 EHYSCTVDMLGRAGQVDKAMELIESMTIK 497



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/201 (21%), Positives = 95/201 (47%), Gaps = 3/201 (1%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL+LF  ++ + G      +  +++S C  L S++  ++V ++++   F+ D+Y+ + +
Sbjct: 314 EALDLFAQMQ-KQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVL 372

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+V+CG ++ A+ +FD    ++++  N II+G    G   EA  +F ++    +    
Sbjct: 373 MTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNK 432

Query: 232 RTFATMIRASAGLELISVGKQL-HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
            T   ++ A +    +  G ++  S   K      V      +DM  + G ++ A  + +
Sbjct: 433 VTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIE 492

Query: 291 EMSEKTTVG-WNTIIAGYALH 310
            M+ K     W  ++     H
Sbjct: 493 SMTIKPDATVWGALLGACKTH 513


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 211/595 (35%), Positives = 322/595 (54%), Gaps = 37/595 (6%)

Query: 146 IREVKRVFSYMLSTGF--EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           ++++K++ + M+ T    EP L  +   L      G ++ A+R+F+ +   N    N II
Sbjct: 1   MKQLKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAII 60

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
               +S +   AFL +  +        S TF  ++RA   L  +    Q+H   +K+GFG
Sbjct: 61  RAYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFG 120

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGY---------------- 307
            +VF   AL+ +Y+ CG I  A+ +FD + E+  V WN +I GY                
Sbjct: 121 SDVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDM 180

Query: 308 ---------------ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
                             G S EAL L YEM+++G ++D    + ++  C  L +L+  +
Sbjct: 181 PLKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGR 240

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGN 410
             H  ++ +G  +D V   ALV+ Y K G +E+A  VF K+    K+V  W A+I G+  
Sbjct: 241 WLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAI 300

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           HGRG EA+E F +M   G+RPN +TF AVL ACS  GL E G E+F+SM   + + P   
Sbjct: 301 HGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIE 360

Query: 471 HYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGM 530
           HY CM++LLGR G LDEA  LI+  P K +  +W ALL AC ++ +  LG      L  +
Sbjct: 361 HYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEV 420

Query: 531 EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQS 590
           + +    Y+ L  I  + GK KEAAEV   ++  G+ + P  S + +    H FL+G Q 
Sbjct: 421 DSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQD 480

Query: 591 HVQTKEIYRKVDRMMLEISK-HGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINT 648
           H Q ++I  K+ ++   + +  GY P  K LL D+ +E+++  ++ HSEKLA+AFGLINT
Sbjct: 481 HPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEEKETAMAQHSEKLAIAFGLINT 540

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              T ++++++ RIC DCH   KL++ +  REI++RD  RFHHF+DG CSC DYW
Sbjct: 541 KPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRDGSCSCKDYW 595



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 154/311 (49%), Gaps = 35/311 (11%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S T+  L+ AC  L ++ E  +V   ++  GF  D++  N +L ++  CG +  AR+LFD
Sbjct: 88  SYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIHCARQLFD 147

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL-------W--------------EEFSD 228
            +PER+ VS N++I G I SGD   A+ +FLD+       W              E  S 
Sbjct: 148 NIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQSVEALSL 207

Query: 229 C----------GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
           C               A+++ A A L  +  G+ LH   L  G   +  + CAL++MY K
Sbjct: 208 CYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNMYVK 267

Query: 279 CGSIEDAQGVFDEM--SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
           CG +E+A  VF ++  ++K    W  +I G+A+HG   EAL+ +  MR  G++ +  TF+
Sbjct: 268 CGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSITFT 327

Query: 337 MIIRICTRLASLEHAKQAHAGL-VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
            ++R C+    +E  K+    +   +     I     +VD   + GR+++A+ +  KM  
Sbjct: 328 AVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKKMPM 387

Query: 396 K-NVISWNALI 405
           K + + W AL+
Sbjct: 388 KPSAVIWGALL 398



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/217 (23%), Positives = 106/217 (48%), Gaps = 7/217 (3%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I  LV   +  EAL L   ++   GF++      +L++AC  L ++ + + +  Y+L+
Sbjct: 190 SLISGLVEAGQSVEALSLCYEMQ-NAGFELDGVAIASLLTACANLGALDQGRWLHFYVLN 248

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP--ERNLVSCNMIIAGMIDSGDYLEAF 216
            G + D  +   ++ M+V+CG M +A  +F ++   ++++     +I G    G  +EA 
Sbjct: 249 NGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEAL 308

Query: 217 LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS--CALID 274
             F  +  E     S TF  ++RA +   L+  GK+L   ++K  +  N  +     ++D
Sbjct: 309 EWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFK-SMKCFYNVNPSIEHYGCMVD 367

Query: 275 MYSKCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYALH 310
           +  + G +++A+ +  +M  K + V W  ++    +H
Sbjct: 368 LLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIH 404


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 192/569 (33%), Positives = 326/569 (57%), Gaps = 2/569 (0%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           AL + C+ + S++  K +  Y++  G E D+ +   +L M+ +CG +  AR +F  MP R
Sbjct: 215 ALAACCLEVSSMQG-KEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLR 273

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
            +V+ N +I G   +    EAF  F+ +  E       T   ++ A A  E    G+ +H
Sbjct: 274 TVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVH 333

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
              ++  F  +V +  AL++MY K G +E ++ +F +++ KT V WN +IA Y       
Sbjct: 334 GYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYT 393

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           EA+ L+ E+ +  +  D+FT S ++     L SL H +Q H+ ++  G+  + +  +A++
Sbjct: 394 EAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVL 453

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
             Y++ G +  +R +FDKM+ K+VISWN +I GY  HG+G+ A+E+F++M  NG++PN  
Sbjct: 454 HMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNES 513

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           TF++VL+ACS SGL + GW  F  M +++ + P+  HY CM +LLGREG L E    I  
Sbjct: 514 TFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIES 573

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            P   T  +W +LLTA R   ++++ ++AAE+++ +E +    Y+VL ++Y  +G+ ++ 
Sbjct: 574 MPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYIVLSSMYADAGRWEDV 633

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYV 614
             V   ++ KGLR     S +E+      F +GD SH Q++ I+   + +  +I +    
Sbjct: 634 ERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSRTIHEVSNILSRKIEETDDT 693

Query: 615 PEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
             +   +P V  +   + + HS +LAV FGLI++   +P+ + ++ RIC  CH+A+KLI+
Sbjct: 694 RNQSYPVP-VATRTTTMPNKHSVRLAVVFGLISSEIGSPILVKKNVRICNHCHHALKLIS 752

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             +GR IVV D+  +H F DG C CGDYW
Sbjct: 753 RYSGRRIVVGDSKIYHEFSDGSCCCGDYW 781



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 218/469 (46%), Gaps = 42/469 (8%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  ++  C  L  + E +     ++  G E D+Y  N ++  + + G++ DA R+FD M
Sbjct: 109 TFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGM 168

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV-G 250
           P R++V+ N ++ G + +G    A   F ++ +               A+  LE+ S+ G
Sbjct: 169 PVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEVSSMQG 228

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH 310
           K++H   ++ G   ++ V  +L+DMY KCG +  A+ VF  M  +T V WN +I GYAL+
Sbjct: 229 KEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALN 288

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
              +EA D + +MR  G++++  T   ++  C +  S  + +  H  +VR  F   +V  
Sbjct: 289 ERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHVVLE 348

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           +AL++ Y K G++E +  +F K+  K ++SWN +IA Y       EA+ LF ++L   + 
Sbjct: 349 TALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLY 408

Query: 431 PNHVTFL-----------------------------------AVLSACSRSGLSERGWEI 455
           P++ T                                     AVL   +RSG      EI
Sbjct: 409 PDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREI 468

Query: 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
           F  M     I    M     I   G+  L  E F  ++    +  ++ + ++LTAC V+G
Sbjct: 469 FDKMVSKDVISWNTMIMGYAIHGQGKTAL--EMFDEMKYNGLQPNESTFVSVLTACSVSG 526

Query: 516 NLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            ++ G      +   YGM P+ + +Y  + ++    G L+E  + I ++
Sbjct: 527 LVDEGWMHFNLMLQEYGMIPQ-IEHYGCMTDLLGREGDLREVLQFIESM 574



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 163/315 (51%), Gaps = 9/315 (2%)

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK 259
           N++I G  D+G    A   +  + E+ +     TF  +++  A L  +  G+  H   +K
Sbjct: 76  NVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIK 135

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDL 319
           +G   +V+   +L+  Y+K G +EDA+ VFD M  +  V WNT++ GY  +G    AL  
Sbjct: 136 LGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALAC 195

Query: 320 YYEMRDSGVKMDHFTFSMIIRI---CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
           + EM D+ +++ H +  +I  +   C  ++S++  K+ H  ++RHG   DI   ++L+D 
Sbjct: 196 FQEMHDA-LEVQHDSVGIIAALAACCLEVSSMQ-GKEIHGYVIRHGLEQDIKVGTSLLDM 253

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           Y K G +  AR VF  M  + V++WN +I GY  + R +EA + F QM   G++   VT 
Sbjct: 254 YCKCGEVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTA 313

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA---FALIR 493
           + +L+AC+++  S  G  +   + R  +  P  +    ++E+ G+ G ++ +   F  I 
Sbjct: 314 INLLAACAQTESSLYGRSVHGYVVR-RQFLPHVVLETALLEMYGKVGKVESSEKIFGKIA 372

Query: 494 GAPFKTTKNMWAALL 508
                +  NM AA +
Sbjct: 373 NKTLVSWNNMIAAYM 387



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 146/290 (50%), Gaps = 4/290 (1%)

Query: 106 LNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           LN+R  EA + F  +  EG   V   T   L++AC    S    + V  Y++   F P +
Sbjct: 287 LNERPDEAFDCFMQMRAEG-LQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPHV 345

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            +   +L M+ + G +  + ++F ++  + LVS N +IA  +    Y EA  LFL+L  +
Sbjct: 346 VLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQ 405

Query: 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
                  T +T++ A   L  +   +Q+HS  + +G+ +N  +  A++ MY++ G +  +
Sbjct: 406 PLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVAS 465

Query: 286 QGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
           + +FD+M  K  + WNT+I GYA+HG  + AL+++ EM+ +G++ +  TF  ++  C+ +
Sbjct: 466 REIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACS-V 524

Query: 346 ASLEHAKQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKM 393
           + L      H  L+   +G+   I     + D   + G + +     + M
Sbjct: 525 SGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESM 574



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 75/153 (49%), Gaps = 3/153 (1%)

Query: 99  SQIEKLVLNKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYML 157
           + I   +  + Y EA+ LF E+L      D    T   ++ A + L S+R  +++ SY++
Sbjct: 381 NMIAAYMYKEMYTEAITLFLELLNQPLYPDY--FTMSTVVPAFVLLGSLRHCRQIHSYII 438

Query: 158 STGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFL 217
             G+  +  + N VL M+ R G ++ +R +FD+M  ++++S N +I G    G    A  
Sbjct: 439 GLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALE 498

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           +F ++          TF +++ A +   L+  G
Sbjct: 499 MFDEMKYNGLQPNESTFVSVLTACSVSGLVDEG 531



 Score = 39.7 bits (91), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 15/160 (9%)

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
           ++ +LV   +  GR+++A      +   +    N +I G+ + G    A+  +  ML +G
Sbjct: 43  SSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDG 102

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWE---IFQSMSRDHKIKPRAMHYAC--MIELLGREG 483
            RP+  TF  V+  C+R G  + G     +   +  +H +      Y C  ++    + G
Sbjct: 103 ARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDV------YTCNSLVAFYAKLG 156

Query: 484 LLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
           L+++A  +  G P +     W  ++     NG   LG  A
Sbjct: 157 LVEDAERVFDGMPVRDIVT-WNTMVDGYVSNG---LGSLA 192


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 210/615 (34%), Positives = 328/615 (53%), Gaps = 37/615 (6%)

Query: 126 FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
           F     T+  LI A    R     K V    + T F  D+++ N ++  +  CG +  A 
Sbjct: 236 FGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAY 295

Query: 186 RLFD--EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
            +F+  E   +++VS N ++ G +  G   +A  LF  +  E     + T  +++ A A 
Sbjct: 296 LVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAK 355

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
              +++G+++     +     N+ V  A IDM+ KCG +E A+G+FD M ++  V W TI
Sbjct: 356 TMNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTI 415

Query: 304 IAGYA--------------------------LHGYSE-----EALDLYYEMR--DSGVKM 330
           I GYA                          + GY +     EAL ++ E++   SG + 
Sbjct: 416 IDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARP 475

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
           D  T    +  C +L +++  +  H  + +    L+    ++L+D YSK G +E A  VF
Sbjct: 476 DQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVF 535

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
             +  K+V  W+A+IAG   HGRGE A+ELF  M    ++PN VTF  +L ACS SGL +
Sbjct: 536 HSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVD 595

Query: 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
            G  +F  M R + + P+  HY+CM+++LGR G L+EA   I G P   + ++W ALL A
Sbjct: 596 EGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGA 655

Query: 511 CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLP 570
           C ++GNLEL + A  +L  +EP     YV+L N+Y  +G  +  +E+ + +R  GL+   
Sbjct: 656 CCIHGNLELAEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKET 715

Query: 571 ACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-- 628
            CS IE+    H F+ GD +H  +++IY K+D +M  +  HGYV     +L  V+E+E  
Sbjct: 716 GCSSIEIDGTVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMK 775

Query: 629 QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
           ++ L  HSEK+A+AFGLI       ++IV++ R+C DCH   K+++ V GR+IV+RD  R
Sbjct: 776 EKALKLHSEKMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYR 835

Query: 689 FHHFKDGMCSCGDYW 703
           FHHF  G CSC DYW
Sbjct: 836 FHHFSGGHCSCQDYW 850



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 140/516 (27%), Positives = 239/516 (46%), Gaps = 89/516 (17%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM-MID-ARRLFDEMP 192
           AL   C    S +++K++ + ML T    D Y  + +           +D AR++FD++P
Sbjct: 144 ALFQQCT---SFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIP 200

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR--TFATMIRASAGLELISVG 250
           + NL S N++I  +  S D +++ L+F+ +  + S  G    TF  +I+A A      VG
Sbjct: 201 QPNLYSWNILIRALATSSDPIQSVLVFIRMLHD-SPFGPNKFTFPVLIKAVAERRCFLVG 259

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD--EMSEKTTVGWNTIIAGYA 308
           K +H  A+K  FGD+VFV  +LI  Y+ CG ++ A  VF+  E + K  V WN+++ G+ 
Sbjct: 260 KAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFV 319

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
             GY ++ALDL+  MR+ GV  +  T   ++  C +  +L   ++    + R+   +++ 
Sbjct: 320 QGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLN 379

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA------------------------- 403
             +A +D + K G +E AR +FD M  ++V+SW                           
Sbjct: 380 VCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKD 439

Query: 404 ------LIAGYGNHGRGEEAVELFEQMLL--NGMRPNHVTFLAVLSAC------------ 443
                 LI+GY   GR +EA+ +F ++ L  +G RP+ VT L+ LSAC            
Sbjct: 440 IPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWI 499

Query: 444 -----------------------SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
                                  S+SG  E+  E+F S+         AM     + + G
Sbjct: 500 HGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAM--IAGLAMHG 557

Query: 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF---AAEKLYGMEPEKLSN 537
           R     E F  ++    K     +  LL AC  +G ++ GK      E++YG+ P K  +
Sbjct: 558 RGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVP-KTKH 616

Query: 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACS 573
           Y  ++++   +G L+EA + I     +G+ + P+ S
Sbjct: 617 YSCMVDVLGRAGHLEEALKFI-----EGMPLAPSAS 647



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 185/393 (47%), Gaps = 44/393 (11%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           +AL+LFE +  EG     + T  +++SAC    ++   ++V  Y+       +L + N  
Sbjct: 326 KALDLFERMRNEG-VHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNAT 384

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVS-------------------------------CN 200
           + M V+CG +  AR LFD M +R++VS                                N
Sbjct: 385 IDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAWN 444

Query: 201 MIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSC 256
           ++I+G   SG   EA  +F +L  + +  G+R    T  + + A A L  + +G+ +H  
Sbjct: 445 VLISGYEQSGRPKEALAIFREL--QLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGY 502

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
             K     N  ++ +LIDMYSK G +E A  VF  +  K    W+ +IAG A+HG  E A
Sbjct: 503 IKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAA 562

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVD 375
           ++L+ +M+++ VK +  TF+ ++  C+    ++  K+    + R +G        S +VD
Sbjct: 563 IELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVD 622

Query: 376 FYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NH 433
              + G +E+A    + M L  +   W AL+     HG  E A +   ++L   + P NH
Sbjct: 623 VLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLL--EIEPGNH 680

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
             ++ + +  +++G  E   E+ Q M RD  +K
Sbjct: 681 GAYVLLSNLYAKTGDWEGVSELRQQM-RDSGLK 712


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 184/476 (38%), Positives = 297/476 (62%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +L+  C   R     K     ++  G E D    N ++ M+ +CG++  A ++FDE+PER
Sbjct: 3   SLLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIPER 62

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254
           ++VS N++I   + +G+  +A  +FL++  E S C   T ++++ A A    +   +QLH
Sbjct: 63  SMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAAKGDVFFCRQLH 122

Query: 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314
           + A+K     +VFV  ALID+Y+KCGSIEDA  VF+ M E+  V W++I+AG+  +   E
Sbjct: 123 AFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNELYE 182

Query: 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374
           E L L+   ++ G++ + F  S +IR C  LA+L   +Q HA + R GFG +    SALV
Sbjct: 183 EGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALV 242

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D Y+K G IE+A  +F  +  KNV+ WNA+I+G+  H    E + LFE+M   GM+P+ V
Sbjct: 243 DMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPDEV 302

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           T++AVLSAC   GL ++G   F  M+R+H + P  +HY+CM+++LGR GL+ EA  L+  
Sbjct: 303 TYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHELMTK 362

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
            PF  T +MW +LL +CR++GNLEL + AA+ L+ MEP++  NYV+L N Y +S K +EA
Sbjct: 363 MPFAATASMWGSLLASCRIHGNLELAEIAAKNLFEMEPDRGGNYVLLANTYAASKKWEEA 422

Query: 555 AEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
           A+  ++L+   +      SWIE+K + H F++G+++H +  +IY +++ ++ E++K
Sbjct: 423 AKARKSLKGSEILKERGKSWIEIKDKVHTFMAGERTHPRITDIYLELNNLLEEMTK 478



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 170/319 (53%), Gaps = 3/319 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   V N    +A+++F  ++ EG       T  +++ AC     +   +++ ++ +   
Sbjct: 71  IGTCVQNGEEEKAIDIFLEMQREGS-PCSEFTVSSVVCACAAKGDVFFCRQLHAFAIKAV 129

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
            + D+++   ++ ++ +CG + DA  +F+ MPERN V+ + I+AG + +  Y E  +LF 
Sbjct: 130 VDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGFVQNELYEEGLVLFA 189

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
              E   +      +++IRA AGL  +  G+Q+H+   + GFG N FV+ AL+DMY+KCG
Sbjct: 190 RGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNNFVASALVDMYAKCG 249

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           SIE+A  +F  + +K  V WN II+G+A H  S E ++L+ EM+ +G++ D  T+  ++ 
Sbjct: 250 SIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQTGMQPDEVTYVAVLS 309

Query: 341 ICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
            C  +  ++  +     + R H    +++  S +VD   + G + +A  +  KM      
Sbjct: 310 ACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHEAHELMTKMPFAATA 369

Query: 400 S-WNALIAGYGNHGRGEEA 417
           S W +L+A    HG  E A
Sbjct: 370 SMWGSLLASCRIHGNLELA 388



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 102/220 (46%), Gaps = 3/220 (1%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S +   V N+ Y E L LF   + E G +       ++I AC GL ++ E ++V + +  
Sbjct: 170 SIVAGFVQNELYEEGLVLFARGK-EMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCR 228

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
           TGF P+ ++ + ++ M+ +CG + +A  LF  + ++N+V  N II+G        E   L
Sbjct: 229 TGFGPNNFVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNL 288

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSCALIDMYS 277
           F ++ +        T+  ++ A   + L+  G+       +      NV     ++D+  
Sbjct: 289 FEEMQQTGMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILG 348

Query: 278 KCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYSEEA 316
           + G + +A  +  +M    T   W +++A   +HG  E A
Sbjct: 349 RGGLVHEAHELMTKMPFAATASMWGSLLASCRIHGNLELA 388


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  368 bits (945), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 204/588 (34%), Positives = 332/588 (56%), Gaps = 15/588 (2%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G + G       +SAC   R I   + +   +L TG E +  ++  ++ M+ + G   DA
Sbjct: 56  GINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDA 115

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
             +F  M  R++V+ + ++A    +G   EA  LF  +  +       T  + + A A L
Sbjct: 116 ASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASL 175

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             +  G  +H      G    V V  AL+++Y KCG IE A   F ++ EK  V W+ I 
Sbjct: 176 GDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAIS 235

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           A YA +  + +A+ + + M   G+  +  TF  ++  C  +A+L+  ++ H      G G
Sbjct: 236 AAYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGG 295

Query: 365 L--DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
           L  D+   +ALV+ YSK G +  A  +FDK+   +++ WN+LIA    HG+ E+A+ELFE
Sbjct: 296 LESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFE 355

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           +M L G++P  +TF +VL ACS +G+ ++G + F S   DH I P A H+ CM++LLGR 
Sbjct: 356 RMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRA 415

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
           G + ++  L+   PF+     W A L ACR   N++   +AAE L+ ++P K + YV+L 
Sbjct: 416 GWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLS 475

Query: 543 NIYNSSG------KLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKE 596
           N+Y  +G      ++++A ++  T++  G       SWIEVK + H F+SGD  H +  E
Sbjct: 476 NMYAKAGRWSDVARMRQAMQLFMTVKEAGR------SWIEVKDRVHEFISGDLDHPRIGE 529

Query: 597 IYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVL-SYHSEKLAVAFGLINTSDWTPLQ 655
           I+ ++ R+   + + GYVP+ + +L DV ++ + ++  YHSEKLA+AF L+ T + +P++
Sbjct: 530 IHAELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPEGSPIR 589

Query: 656 IVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +V++ R+C DCH A K I+ +  REIVVRD +RFH F++G CSCGDYW
Sbjct: 590 VVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 144/287 (50%)

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           +L  + + G +   R+ FDEMP  ++VS N +IA  I + D+   +L F  +  +  + G
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
               +  + A      I++G+ +    L  G  +   V  AL+ MY K G   DA  VF 
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            MS +  V W+ ++A YA +G+  EAL L+ +M   GV  +  T    +  C  L  L  
Sbjct: 121 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 180

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
               H  +   G    +V  +ALV+ Y K GRIE A   F +++ KNV++W+A+ A Y  
Sbjct: 181 GALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYAR 240

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457
           + R  +A+ +  +M L G+ PN  TF++VL AC+     ++G  I +
Sbjct: 241 NDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHE 287


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  368 bits (945), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 185/437 (42%), Positives = 269/437 (61%), Gaps = 8/437 (1%)

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
           LI  Y++ G + DA+ +FDEM  +  V W+ ++ GY   G   EAL ++  M+   V+ D
Sbjct: 149 LITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPD 208

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
                 ++  C +  +LE  K  H  L  HG  +++   +ALVD YSK G ++ A  VF+
Sbjct: 209 DTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFE 268

Query: 392 KMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
           +M  KNV++W  +I G   HGRG EAV LF QM  +G+RP+ + F+ VL AC+ +GL ++
Sbjct: 269 RMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDK 328

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
           G E+F SM R + IKP+  HY CM++LL R G L EA  +I+  P +    +W AL+  C
Sbjct: 329 GRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGC 388

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571
           R + N+E  ++ A+    +EP+K   YV+L NIY +SG+   A E+   +R KG+   P 
Sbjct: 389 RFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPG 448

Query: 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRK---VD-RMMLEISKHGYVPEEKTLLPDVDEQ 627
           CS +EV    H F+ GD SH + K+I  K   +D R+ LE    GY+P+ K +L D++E+
Sbjct: 449 CSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTRIRLE---EGYIPDMKEVLLDIEEE 505

Query: 628 EQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDA 686
           E+   LS HSEKLA+AF LI+ SD  P++I ++ R+C DCH+  KLI+ V GREIVVRD 
Sbjct: 506 EKEGALSRHSEKLAIAFALISISDNMPIRIFKNLRVCHDCHHVTKLISKVYGREIVVRDR 565

Query: 687 SRFHHFKDGMCSCGDYW 703
           +RFH FK+G CSC DYW
Sbjct: 566 TRFHLFKEGTCSCKDYW 582



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 128/254 (50%), Gaps = 2/254 (0%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           +L T    D    N ++  + R G + DAR LFDEMP RN VS + ++ G + +GD  EA
Sbjct: 134 LLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREA 193

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
             +F  +  E           ++ A A    +  GK +H      G   N+F   AL+DM
Sbjct: 194 LRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDM 253

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           YSKCG ++ A  VF+ M  K  + W T+I G A+HG   EA+ L+ +M  SG++ D   F
Sbjct: 254 YSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAF 313

Query: 336 SMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM- 393
             ++  CT    ++  ++    +VR +G    I     +VD  ++ G + +A+ +  KM 
Sbjct: 314 IGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMP 373

Query: 394 LCKNVISWNALIAG 407
           +  + + W AL+AG
Sbjct: 374 MEPDALIWGALMAG 387



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 97/210 (46%), Gaps = 7/210 (3%)

Query: 111 REALELFEILEFEGGFDV--GSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMR 168
           REAL +F  ++ E   DV    +    +++AC    ++ + K V  Y+ + G + +L+  
Sbjct: 191 REALRIFARMQAE---DVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFG 247

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228
             ++ M+ +CG +  A  +F+ M  +N+++   +I G+   G   EA +LF  +      
Sbjct: 248 TALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIR 307

Query: 229 CGSRTFATMIRASAGLELISVGKQL-HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
                F  ++ A     L+  G++L  S   K G    +     ++D+ ++ G + +A+ 
Sbjct: 308 PDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKE 367

Query: 288 VFDEMS-EKTTVGWNTIIAGYALHGYSEEA 316
           +  +M  E   + W  ++AG   H   E A
Sbjct: 368 MIQKMPMEPDALIWGALMAGCRFHKNVEFA 397


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  368 bits (945), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 192/572 (33%), Positives = 330/572 (57%), Gaps = 13/572 (2%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           +++  +K+V ++M++TG     Y  +R+LL+     +   A  +F+ +P   +   N +I
Sbjct: 20  KTLDTLKQVHAHMITTGLIFHTYPLSRILLISSTI-VFTHALSIFNHIPNPTIFLYNTLI 78

Query: 204 AGMIDSGDYLE-AFLLFLDLWEEFS-DCGSRTFATMIRASAGLELISVGKQLHSCALK-M 260
           + + +   +   AF L+  +    +      TF ++ +A      +  G+ LH+  LK +
Sbjct: 79  SSLANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHVLKFL 138

Query: 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG--------Y 312
               + FV  AL++ Y+KCG +   + +F+++S+     WN+I++ Y  +          
Sbjct: 139 EPTCDPFVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVHNSGAICEDVSL 198

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
           S E L L+ EM+ S +K +  T   +I  C  L +L     AH  +++H   L+    +A
Sbjct: 199 SLEVLTLFIEMQKSLIKANEVTLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTA 258

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           L+D YSK G ++ A  +FD++  ++ + +NA+I G+  HG G +A++LF++M L G+ P+
Sbjct: 259 LIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPD 318

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            VT +  + +CS  GL E G ++F+SM   + ++P+  HY C+++LLGR G L EA   +
Sbjct: 319 DVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERV 378

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
              P K    +W +LL A RV+GNLE+G+   + L  +EPE   NYV+L N+Y S  +  
Sbjct: 379 LNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHLIQLEPETSGNYVLLSNMYASINRWD 438

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
           +   V + ++  G+  +P  S +EV    H FL GD++H ++KEIY K++ M   + ++G
Sbjct: 439 DVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMGDKTHPRSKEIYLKLEEMSRRLHEYG 498

Query: 613 YVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           + P    +L D++E+E+   LSYHSE+LA+AF LI +    P++I+++ R+C DCH + K
Sbjct: 499 HKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALIASHHCAPIRIIKNLRVCGDCHTSSK 558

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           LI+ +  REI+VRD +RFHHFK+G CSC DYW
Sbjct: 559 LISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590



 Score = 47.4 bits (111), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 2/185 (1%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T  ALISAC  L ++ +      Y+L    + + ++   ++ M+ +CG +  A +LFD++
Sbjct: 220 TLVALISACAELGALSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQL 279

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG- 250
           P R+ +  N +I G    G   +A  LF  +  E       T    + + + + L+  G 
Sbjct: 280 PHRDTLCYNAMIGGFAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGC 339

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG-VFDEMSEKTTVGWNTIIAGYAL 309
               S     G    +     L+D+  + G + +A+  V +   +   V W +++    +
Sbjct: 340 DVFESMKEVYGVEPKLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARV 399

Query: 310 HGYSE 314
           HG  E
Sbjct: 400 HGNLE 404


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 198/552 (35%), Positives = 312/552 (56%), Gaps = 32/552 (5%)

Query: 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243
           A+ +F  +    +   N  +    +     +A  LF  L E        T + +++A + 
Sbjct: 66  AKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSR 125

Query: 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303
           L  +  GK +H    K+G   N+F+   ++ +Y+ CG I  A+ VFD+M ++  + WN +
Sbjct: 126 LLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIM 185

Query: 304 IA-------------------------------GYALHGYSEEALDLYYEMRDSGVKMDH 332
           IA                               GYA  G S+EA+DL+ EM D+G+  + 
Sbjct: 186 IARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNE 245

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
            T   ++  C  + +L   ++ H    R G+  +I   + L+D Y K G +EDA  +FD 
Sbjct: 246 VTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDN 305

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           M  + V+SW+A+IAG   HGR E+A+ LF +M+  G++PN VTF+ +L ACS  G+ E+G
Sbjct: 306 MEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKG 365

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACR 512
            + F SM+RD+ I PR  HY CM++L  R GLL EA   I   P      +W ALL  C+
Sbjct: 366 RKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCK 425

Query: 513 VNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPAC 572
           V+ N++L + A   L  ++P     YVVL NIY  +G+ ++ A V + +R +G++  P  
Sbjct: 426 VHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGW 485

Query: 573 SWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRV 631
           S I V+   + F++GD +H QT+EI++  ++++  +   GYVP    +L D++E Q+++ 
Sbjct: 486 SSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKF 545

Query: 632 LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHH 691
           L  HSEKLAV FGLI T+  T ++I+++ R+C DCH A+K+I++V+ REIVVRD +RFH 
Sbjct: 546 LYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHC 605

Query: 692 FKDGMCSCGDYW 703
           FK+G CSCGDYW
Sbjct: 606 FKNGSCSCGDYW 617



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 106/365 (29%), Positives = 185/365 (50%), Gaps = 40/365 (10%)

Query: 112 EALELFEILEFEGGFDVGSSTYDA--LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           +A+ LF  L     FD+    Y    ++ AC  L  +R  K V  Y+   G + +++++N
Sbjct: 96  DAISLFYRLR---EFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQN 152

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF---------- 219
            ++ ++  CG +  AR++FD+MP+R++++ N++IA ++  GD   A+ LF          
Sbjct: 153 MIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRS 212

Query: 220 -----------------LDLWEEFSDCG----SRTFATMIRASAGLELISVGKQLHSCAL 258
                            +DL+ E  D G      T   ++ A A +  + +G+++H  + 
Sbjct: 213 WTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFSN 272

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
           + G+  N+ V   LIDMY KCG +EDA  +FD M E+T V W+ +IAG A HG +E+AL 
Sbjct: 273 RSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDALA 332

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFY 377
           L+ +M ++GVK +  TF  I+  C+ +  +E  ++  A + R +G    I     +VD +
Sbjct: 333 LFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLF 392

Query: 378 SKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           S+ G +++A      M +  N + W AL+ G   H   + A E      L+ + P +  +
Sbjct: 393 SRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRH--LSKLDPLNDGY 450

Query: 437 LAVLS 441
             VLS
Sbjct: 451 YVVLS 455



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 165/381 (43%), Gaps = 74/381 (19%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCG---SIEDAQGVFDEMSEKTTVGWNTIIAGY 307
           KQLH+  LK    ++   S  L  + S C    S   A+ +F  +       WNT +  +
Sbjct: 32  KQLHAHLLKT---NSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWNTCLRSF 88

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           A      +A+ L+Y +R+  +  DH+T S +++ C+RL  + + K  H  + + G   ++
Sbjct: 89  AEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNM 148

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA--------------------- 406
              + +V  Y+  G I  AR VFDKM  ++VI+WN +IA                     
Sbjct: 149 FLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPER 208

Query: 407 ----------GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456
                     GY   G+ +EA++LF +M   G+ PN VT +AVL AC+  G    G  I 
Sbjct: 209 NVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIH 268

Query: 457 QSMSR--------------DHKIKPRAMHYAC----------------MIELLGREGLLD 486
              +R              D  +K   +  AC                MI  L   G  +
Sbjct: 269 DFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAE 328

Query: 487 EAFALIR---GAPFKTTKNMWAALLTACRVNGNLELGK--FAA-EKLYGMEPEKLSNYVV 540
           +A AL         K     +  +L AC   G +E G+  FA+  + YG+ P ++ +Y  
Sbjct: 329 DALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVP-RIEHYGC 387

Query: 541 LLNIYNSSGKLKEAAEVIRTL 561
           ++++++ +G L+EA E I  +
Sbjct: 388 MVDLFSRAGLLQEAHEFIMNM 408


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 205/595 (34%), Positives = 337/595 (56%), Gaps = 3/595 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N    E LELF  +  E   D    T  ++ISAC  L   R   ++ SY++ T ++ ++ 
Sbjct: 214 NDECLEGLELFFRMR-ELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNIS 272

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N ++ M++  G   +A  +F  M  R++VS   II+G +D+    +A   +  +    
Sbjct: 273 VYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITG 332

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
           +     T A+++ A A L  + +G +LH  A + G    V V+ +LIDMYSKC  IE A 
Sbjct: 333 TMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKAL 392

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +F ++ +K  + W ++I G  ++    EAL  + +M     K +  T    +  C R+ 
Sbjct: 393 EIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMILKS-KPNSVTLISALSACARVG 451

Query: 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIA 406
           +L   K+ HA  ++ G G D    +A++D Y + GR+  A + F+ +  K+V +WN L+ 
Sbjct: 452 ALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQFN-LNEKDVGAWNILLT 510

Query: 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466
           GY   G+G   +ELF++M+ + + P+ VTF+++L ACSRSG+   G E FQ M  ++ I 
Sbjct: 511 GYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYHIT 570

Query: 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           P   HYAC+++LLGR G L+EA   I   P K    +W ALL ACR++ ++ LG+ AA+ 
Sbjct: 571 PNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLLGELAAQH 630

Query: 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLS 586
           ++  + E +  Y++L N+Y  SGK  E A+V RT++ +GL + P CSW+EVK + H FLS
Sbjct: 631 IFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKGKVHAFLS 690

Query: 587 GDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLI 646
           GD  H Q +EI   ++    ++   G+  +E + +  +   +  +   HSE+ A+A+ LI
Sbjct: 691 GDNFHPQMQEINVVLEGFYEKMKTSGFNGQECSSMDGIQTSKADIFCGHSERQAIAYSLI 750

Query: 647 NTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
           N++   P+ + ++  +C  CH+ +K I+ +  REI VRD  +FHHFKDG+CSCGD
Sbjct: 751 NSAPGMPIWVTKNLYMCQSCHSTVKFISKIVRREISVRDTEQFHHFKDGLCSCGD 805



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 136/469 (28%), Positives = 227/469 (48%), Gaps = 36/469 (7%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + EAL L+  + +  G      T+ +++ +C G   +   + V ++++   F+ D+ + N
Sbjct: 116 FDEALCLYHRILW-AGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVN 174

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+V+CG ++ AR LFD+MP R+ +S N +I+G  ++ + LE   LF  + E   D 
Sbjct: 175 ALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDP 234

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
              T  ++I A   L    +G QLHS  ++  +  N+ V  +LI MY   G  ++A+ VF
Sbjct: 235 DLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVF 294

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
             M  +  V W TII+G   +   ++AL+ Y  M  +G   D  T + ++  C  L  L+
Sbjct: 295 SGMECRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLD 354

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
              + H    R G  L +V  ++L+D YSK  RIE A  +F ++  K+VISW ++I G  
Sbjct: 355 MGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLR 414

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            + R  EA+  F +M+L   +PN VT ++ LSAC+R G    G EI       H +K   
Sbjct: 415 INNRCFEALIFFRKMILKS-KPNSVTLISALSACARVGALMCGKEIHA-----HALKAG- 467

Query: 470 MHYACMIELLGREGLLDEAF--ALIRGAPFKTTKNM----------WAALLTACRVNGN- 516
                    +G +G L  A     +R    +T  N           W  LLT     G  
Sbjct: 468 ---------MGFDGFLPNAILDLYVRCGRMRTALNQFNLNEKDVGAWNILLTGYAQKGKG 518

Query: 517 ---LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
              +EL K   E    + P+ ++ ++ LL   + SG + E  E  + ++
Sbjct: 519 AMVMELFKRMVES--EINPDDVT-FISLLCACSRSGMVTEGLEYFQRMK 564



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 148/296 (50%), Gaps = 15/296 (5%)

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
           AL+ M+ + G + +A  VF  M E+    WN ++ GY   G+ +EAL LY+ +  +G++ 
Sbjct: 74  ALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRP 133

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
           D +TF  ++R C     L   ++ HA +VR  F +D+   +AL+  Y K G +  AR +F
Sbjct: 134 DVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLF 193

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
           DKM  ++ ISWNA+I+GY  +    E +ELF +M    + P+ +T  +V+SAC   G   
Sbjct: 194 DKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDER 253

Query: 451 RGWEIFQSMSR---DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
            G ++   + R   D  I      Y  +I++    G   EA ++  G   +   + W  +
Sbjct: 254 LGTQLHSYVVRTAYDGNISV----YNSLIQMYLSVGHWKEAESVFSGMECRDVVS-WTTI 308

Query: 508 LTACRVN--GNLELGKFAAEKLYGMEPEKLSNYVVL-----LNIYNSSGKLKEAAE 556
           ++ C  N   +  L  +   ++ G  P++++   VL     L   +   KL E AE
Sbjct: 309 ISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAE 364



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 82/162 (50%), Gaps = 1/162 (0%)

Query: 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360
           N+ +    L G  E+AL     M++  + ++   F  +IR+C         +     ++ 
Sbjct: 2   NSRLLQLCLSGNLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLS 61

Query: 361 HGFGL-DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVE 419
               L  +   +AL+  + ++G + +A +VF +M  +++ SWN L+ GY   G  +EA+ 
Sbjct: 62  SLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALC 121

Query: 420 LFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
           L+ ++L  G+RP+  TF +VL +C+ +    RG E+   + R
Sbjct: 122 LYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVR 163


>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
          Length = 660

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 203/552 (36%), Positives = 322/552 (58%), Gaps = 10/552 (1%)

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           F  D ++  R++  +   G +  AR++FDE P +++   N ++  +  +    EA     
Sbjct: 110 FRSDPFLSTRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALADHGEEALARLA 169

Query: 221 DLWEEFSDCGSRTFATMIRA-----SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
           D+        S ++A  ++A     ++ +   ++ +++H+ A++ G+G +  V+  LID 
Sbjct: 170 DMGRLRVPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHTHVATTLIDC 229

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM--RDSGVKMDHF 333
           Y+K G +  A+ VF  M E+  V W  +I  YA +    +A+ L+ EM   D  +  +  
Sbjct: 230 YAKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVPNSV 289

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           T   I+     + +L   K  HA ++R GF   +   +AL+  Y K G +E  RH+FD +
Sbjct: 290 TIVCILHAFAGVNALGQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGRHIFDLI 349

Query: 394 -LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
              K+V+SWN LI+GYG HG G EAV++FE M   G+ PN +TF++VL ACS +GL + G
Sbjct: 350 GHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHAGLVDEG 409

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACR 512
             +F+SM  D+ + PRA HYACM++LLGR G LDEA  LI+G   + +  +W +LL ACR
Sbjct: 410 KRLFESMV-DYNVTPRAEHYACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWGSLLGACR 468

Query: 513 VNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPAC 572
           ++ ++E  + A  +L+ +EP    NYV+L +IY  +    E   +   L    L  +P C
Sbjct: 469 IHRHVEYAEMACSQLFDLEPRNAGNYVLLADIYARAKLHSEVGVLKDLLEEHALEKVPGC 528

Query: 573 SWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVL 632
           SWIEVKK+ H+F+S D  + Q +E+   +   + ++   GYVP+   +L D++E+E+  +
Sbjct: 529 SWIEVKKRLHMFVSVDNKNPQIEELQALIGEFVTQMKNDGYVPDTGAVLYDIEEEEKEKI 588

Query: 633 SY-HSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHH 691
              HSEKLAVAFGLINT     ++I ++ R+C DCH+  K I+    REI+VRD +RFHH
Sbjct: 589 LLGHSEKLAVAFGLINTGRGEVIRITKNLRLCEDCHSVTKFISKYAEREIIVRDVNRFHH 648

Query: 692 FKDGMCSCGDYW 703
           F+DG+CSCGDYW
Sbjct: 649 FRDGICSCGDYW 660



 Score =  112 bits (279), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 151/328 (46%), Gaps = 50/328 (15%)

Query: 128 VGSSTYDALISACIGLRSIRE-----VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           V S +Y   + ACI   +        V+ + ++ +  G+    ++   ++  + + G++ 
Sbjct: 178 VDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHTHVATTLIDCYAKLGIVS 237

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC--GSRTFATMIRA 240
            A  +F  MPERN+VS   +I     +    +A LLF ++     D    S T   ++ A
Sbjct: 238 YAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVPNSVTIVCILHA 297

Query: 241 SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE-KTTVG 299
            AG+  +  GK LH+  L+ GF   V V  AL+ MY KCG +E  + +FD +   K  V 
Sbjct: 298 FAGVNALGQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGRHIFDLIGHRKDVVS 357

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           WNT+I+GY +HG+  EA+ ++ +M   GV  +  TF  ++  C+           HAGLV
Sbjct: 358 WNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACS-----------HAGLV 406

Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS----WNALIAGYGNHGRGE 415
                                   ++ + +F+ M+  NV      +  ++   G  G  +
Sbjct: 407 ------------------------DEGKRLFESMVDYNVTPRAEHYACMVDLLGRAGHLD 442

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           EAVEL + M    +RP+   + ++L AC
Sbjct: 443 EAVELIQGM---HIRPSPQVWGSLLGAC 467



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/213 (22%), Positives = 103/213 (48%), Gaps = 3/213 (1%)

Query: 107 NKRYREALELF-EILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL 165
           N+R  +A+ LF E++  +      S T   ++ A  G+ ++ + K + +Y+L  GF+  +
Sbjct: 264 NERPGDAILLFQEMVASDEDLVPNSVTIVCILHAFAGVNALGQGKLLHAYILRRGFDSLV 323

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPER-NLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
            + N ++ M+++CG +   R +FD +  R ++VS N +I+G    G   EA  +F D+ +
Sbjct: 324 SVLNALMAMYMKCGCLEAGRHIFDLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQ 383

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                   TF +++ A +   L+  GK+L    +             ++D+  + G +++
Sbjct: 384 MGVSPNIITFISVLGACSHAGLVDEGKRLFESMVDYNVTPRAEHYACMVDLLGRAGHLDE 443

Query: 285 AQGVFDEMSEKTTVG-WNTIIAGYALHGYSEEA 316
           A  +   M  + +   W +++    +H + E A
Sbjct: 444 AVELIQGMHIRPSPQVWGSLLGACRIHRHVEYA 476


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  368 bits (944), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 203/588 (34%), Positives = 334/588 (56%), Gaps = 15/588 (2%)

Query: 125 GFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDA 184
           G + G       +SAC   R I   + +   +L TG E +  ++  ++ ++ + G   DA
Sbjct: 71  GINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDA 130

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
             +F  M  R++V+ + ++A    +G   EA  LF  +  +       T  + + A A L
Sbjct: 131 ASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASL 190

Query: 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTII 304
             +  G  +H      G    V V  AL+++Y KCG IE A   F ++ EK  V W+ I 
Sbjct: 191 GDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAIS 250

Query: 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG 364
           A YA +  + +A+ + + M   G+  +  TF  ++  C  +A+L+  ++ H  +   G G
Sbjct: 251 AAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGG 310

Query: 365 L--DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
           L  D+   +ALV+ YSK G +  A ++FDK+   +++ WN+LIA    HG+ E+A+ELFE
Sbjct: 311 LESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFE 370

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           +M L G++P  +TF +VL ACS +G+ ++G + F S   DH I P A H+ CM++LLGR 
Sbjct: 371 RMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRA 430

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
           G + ++  L+   PF+     W A L ACR   N++   +AAE L+ ++P K + YV+L 
Sbjct: 431 GWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLS 490

Query: 543 NIYNSSG------KLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKE 596
           N+Y  +G      ++++A ++  T++  G       SWIEVK + H F+SGD  H +  E
Sbjct: 491 NMYAKAGRWSDVARMRQAMQLFMTVKEAGR------SWIEVKDRVHEFISGDLDHPRIGE 544

Query: 597 IYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQ 655
           I+ ++ R+   +   GYVP+ + +L DV ++ ++ ++ YHSEKLA+AF L+ T + +P++
Sbjct: 545 IHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAMAFALLTTPEGSPIR 604

Query: 656 IVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +V++ R+C DCH A K I+ +  REIVVRD +RFH F++G CSCGDYW
Sbjct: 605 VVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 147/299 (49%), Gaps = 5/299 (1%)

Query: 166 YMRNRVLL-----MHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
           ++RNR L      ++ +C    DA  +F  +  +N+ S  M++A   ++ D+   +L F 
Sbjct: 6   WIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFR 65

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            +  +  + G    +  + A      I++G+ +    L  G  +   V  AL+ +Y K G
Sbjct: 66  GMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLG 125

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
              DA  VF  MS +  V W+ ++A YA +G+  EAL L+ +M   GV  +  T    + 
Sbjct: 126 HCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLD 185

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C  L  L      H  +   G    +V  +ALV+ Y K GRIE A   F +++ KNV++
Sbjct: 186 ACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVA 245

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           W+A+ A Y  + R  +A+ +  +M L G+ PN  TF++VL AC+     ++G  I + +
Sbjct: 246 WSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERI 304


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 201/583 (34%), Positives = 329/583 (56%), Gaps = 39/583 (6%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           E GF     ++   + AC  L  +R  K++   ++      + ++RN +  M+ +CG + 
Sbjct: 148 EDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDID 207

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
            AR LFD M ++N+VS N++I+G +  G+  E   LF     E    G +          
Sbjct: 208 KARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLF----NEMQLSGLKP--------- 254

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
             +L++V   L++                    Y +CG ++DA+ +F ++ +K  + W T
Sbjct: 255 --DLVTVSNVLNA--------------------YFRCGRVDDARNLFIKLPKKDEICWTT 292

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           +I GYA +G  E+A  L+ +M    VK D +T S ++  C +LASL H +  H  +V  G
Sbjct: 293 MIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMG 352

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
               ++ +SALVD Y K G   DAR +F+ M  +NVI+WNA+I GY  +G+  EA+ L+E
Sbjct: 353 IDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYE 412

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           +M     +P+++TF+ VLSAC  + + + G + F S+S +H I P   HYACMI LLGR 
Sbjct: 413 RMQQENFKPDNITFVGVLSACINADMVKEGQKYFDSIS-EHGIAPTLDHYACMITLLGRS 471

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
           G +D+A  LI+G P +    +W+ LL+ C   G+L+  + AA  L+ ++P     Y++L 
Sbjct: 472 GSVDKAVDLIQGMPHEPNYRIWSTLLSVC-AKGDLKNAELAASHLFELDPRNAGPYIMLS 530

Query: 543 NIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVD 602
           N+Y + G+ K+ A V   ++ K  +   A SW+EV  + H F+S D  H +  +IY +++
Sbjct: 531 NLYAACGRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELN 590

Query: 603 RMMLEISKHGYVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWT-PLQIVQSH 660
           R++  + + GY P+   +L +V E+E+ R +SYHSEKLA+AF LI   +   P++I+++ 
Sbjct: 591 RLISILQQIGYNPDTNIVLHNVGEEEKFRSISYHSEKLALAFALIRKPNGVAPIRIIKNI 650

Query: 661 RICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           R+C DCH  +K  ++   R I++RD++RFHHF  G CSC D W
Sbjct: 651 RVCDDCHVFMKFASITISRPIIMRDSNRFHHFFGGKCSCNDNW 693



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 157/329 (47%), Gaps = 34/329 (10%)

Query: 120 LEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG 179
           L F+G  D    +++ +IS  + + +  E   +F+ M  +G +PDL   + VL  + RCG
Sbjct: 211 LLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCG 270

Query: 180 MMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIR 239
            + DAR LF ++P+++ +    +I G   +G   +A++LF D+        S T ++M+ 
Sbjct: 271 RVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVS 330

Query: 240 ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
           + A L  +  G+ +H   + MG  +++ VS AL+DMY KCG   DA+ +F+ M  +  + 
Sbjct: 331 SCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVIT 390

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           WN +I GYA +G   EAL LY  M+    K D+ TF  ++  C     ++  ++    + 
Sbjct: 391 WNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVKEGQKYFDSIS 450

Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVE 419
            HG        +  +D Y+                         +I   G  G  ++AV+
Sbjct: 451 EHGI-------APTLDHYA------------------------CMITLLGRSGSVDKAVD 479

Query: 420 LFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
           L + M      PN+  +  +LS C++  L
Sbjct: 480 LIQGM---PHEPNYRIWSTLLSVCAKGDL 505



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 116/201 (57%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           +V+    L+  Y+K G +E+   VFD+M  + +V +NT+IA +A +G+S +AL +   M+
Sbjct: 88  DVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQ 147

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
           + G +   ++    ++ C++L  L H KQ H  +V    G +    +A+ D Y+K G I+
Sbjct: 148 EDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDID 207

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            AR +FD M+ KNV+SWN +I+GY   G   E + LF +M L+G++P+ VT   VL+A  
Sbjct: 208 KARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYF 267

Query: 445 RSGLSERGWEIFQSMSRDHKI 465
           R G  +    +F  + +  +I
Sbjct: 268 RCGRVDDARNLFIKLPKKDEI 288


>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
 gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
          Length = 620

 Score =  367 bits (943), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 198/561 (35%), Positives = 323/561 (57%), Gaps = 10/561 (1%)

Query: 149 VKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208
            ++VF  ML      D+     +L ++ + G    A  +F+ MP ++ VS N +I   + 
Sbjct: 64  AEKVFDGMLLR----DVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVG 119

Query: 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN-VF 267
           +  + +A  LF  +  E       T  +++ A  GLE + + +Q+H+ A   GFG N   
Sbjct: 120 NSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTA 179

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH--GYSEEALDLYYEMRD 325
           V  ++++MY++CGS+ D +  FD + EK  V W+ ++A YA    G    A   + EM  
Sbjct: 180 VGNSVVNMYARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEA 239

Query: 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF-GLDIVANSALVDFYSKWGRIE 384
            G+K    TF   +  C  +A+LEH +  H      GF    +V  + +++ Y K G   
Sbjct: 240 EGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPS 299

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           DA+ VFD+M  K +ISWN+LI  Y ++G   EA+   ++MLL G  P+  T +++L   S
Sbjct: 300 DAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLS 359

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM- 503
            +GL ERG E F+S  +DH ++P +    C+++LL R+G LD A  LI  +P      + 
Sbjct: 360 HAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIA 419

Query: 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563
           W  LL AC+  G+ + G   AE+++ +EP+   ++VVL N+Y S G+  +A+ + + + R
Sbjct: 420 WMTLLAACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMER 479

Query: 564 KGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD 623
             ++  P CSWIE+    H F+SG+  H + +EI  +++++ L + + GYVP+   ++ D
Sbjct: 480 MSVKKEPGCSWIELSGSVHEFISGESKHPKIREICEELEKLTLRMREAGYVPDTTNVVHD 539

Query: 624 VDE-QEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           V+E  ++ +LS HSE+LA+ FGL++T     +++V++ R+C DCH A K+I+ V GREIV
Sbjct: 540 VEEGDKEEILSRHSERLAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREIV 599

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           VRD+SRFHHFK G CSCGD+W
Sbjct: 600 VRDSSRFHHFKHGQCSCGDFW 620



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 169/348 (48%), Gaps = 10/348 (2%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           I   V N ++++ALELF  +E E G      T  +L+ AC GL  ++  +++ +   + G
Sbjct: 114 INASVGNSKFQDALELFHGMELE-GLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGG 172

Query: 161 FEPD-LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS--GDYLEAFL 217
           F  +   + N V+ M+ RCG ++D ++ FD + E+ LV+ ++++A    S  G    AF 
Sbjct: 173 FGGNSTAVGNSVVNMYARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFK 232

Query: 218 LFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV-SCALIDMY 276
            F ++  E    G  TF + + A A +  +  G+ +H  A   GF +   V    +I+MY
Sbjct: 233 FFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMY 292

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
            KCGS  DA+ VFD+M EK  + WN++I  YA +G++ EAL    EM   G   D  T  
Sbjct: 293 GKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSV 352

Query: 337 MIIRICTRLASLEHA-KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH-VFDKML 394
            I+   +    LE   +   + +  HG          LVD  ++ G ++ A   +     
Sbjct: 353 SILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPA 412

Query: 395 CK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
           C+ + I+W  L+A   ++G  +  +   E++    + P H     VL+
Sbjct: 413 CQADTIAWMTLLAACKSYGDPQRGIRCAERVF--ELEPQHSGSFVVLA 458



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 169/364 (46%), Gaps = 38/364 (10%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
            F   + A A    +  G+Q+HS  +  G   N+ +S +L++MY KC  +  A+ VFD M
Sbjct: 12  VFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGM 71

Query: 293 SEKTTVGWNTIIAGY--------ALHGYS-----------------------EEALDLYY 321
             +  V W  ++A Y        ALH +                        ++AL+L++
Sbjct: 72  LLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVGNSKFQDALELFH 131

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA-NSALVDFYSKW 380
            M   G++ + FT   ++  C  L  L+ A+Q HA     GFG +  A  +++V+ Y++ 
Sbjct: 132 GMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARC 191

Query: 381 GRIEDARHVFDKMLCKNVISWNALIAGYGNH--GRGEEAVELFEQMLLNGMRPNHVTFLA 438
           G + D +  FD +  K +++W+ ++A Y     G G  A + F++M   G++P  VTF++
Sbjct: 192 GSLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAEGIKPGEVTFVS 251

Query: 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK 498
            L AC+     E G  + +  +    ++   +    +I + G+ G   +A  +    P K
Sbjct: 252 ALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEK 311

Query: 499 TTKNMWAALLTACRVNGN-LE-LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
              + W +L+ A   NG+ LE L       L G +P+  ++  +L  + + +G L+   E
Sbjct: 312 CLIS-WNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSH-AGLLERGVE 369

Query: 557 VIRT 560
             R+
Sbjct: 370 HFRS 373



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 141/338 (41%), Gaps = 68/338 (20%)

Query: 323 MRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382
           M+  G + D   F + +  C     L+H +Q H+ +V  G   +I+ +++LV+ Y K   
Sbjct: 1   MQWEGTRPDKVVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQD 60

Query: 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442
           +  A  VFD ML ++V+SW A++A Y  +G   +A+ +FE M     R + V++ AV++A
Sbjct: 61  VPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAM----PRKDDVSWNAVINA 116

Query: 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKN 502
              +   +   E+F  M                 EL   EGL    F L+          
Sbjct: 117 SVGNSKFQDALELFHGM-----------------EL---EGLRSNEFTLL---------- 146

Query: 503 MWAALLTACRVNGNLELGKFAAE-------KLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
              +LL AC   G LE  K A +         +G     + N VV  N+Y   G L +  
Sbjct: 147 ---SLLEAC---GGLEDLKLARQIHARAAAGGFGGNSTAVGNSVV--NMYARCGSLLDTK 198

Query: 556 EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKE-IYRKVDRMMLEISKHGYV 614
           +   +L  KGL      +W        + L+   ++ Q+K+   R+  +   E+   G  
Sbjct: 199 KAFDSLEEKGL-----VAW-------SIMLA---AYAQSKDGSGRRAFKFFQEMEAEGIK 243

Query: 615 PEEKTLLPDVDEQEQRVLSYHSEKL---AVAFGLINTS 649
           P E T +  +D         H   +   A A G + TS
Sbjct: 244 PGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETS 281


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  367 bits (943), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 204/595 (34%), Positives = 332/595 (55%), Gaps = 42/595 (7%)

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLL-MHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
           R V+RV + +L  G   DL     +L+  + R  ++ DARR FD+ P R+L   + ++A 
Sbjct: 18  RAVRRVHARLLKEGLA-DLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAA 76

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMG 261
           +  S D     L+   L    SD   R      A++  A+  L  + +G+QLH+      
Sbjct: 77  VSHSSD---PELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASP 133

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD--- 318
           +  +  V  +LIDMY KCG  +DA+ VFD +  K +V W  +I+GYA +G + EALD   
Sbjct: 134 YSADNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQ 193

Query: 319 ----------------------------LYYEMRDSGVKM-DHFTFSMIIRICTRLASLE 349
                                       L+ EMR   +++ D F  + +I     LA+L 
Sbjct: 194 SMPAHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALV 253

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             +Q H  ++R GF   ++  +ALVD YSK   I  AR VF+ +  ++VISW  ++ G  
Sbjct: 254 LGRQLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEA 313

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA 469
            HGR EE   L+ +MLL GM+PN VTF+ ++ ACS +GL ++G ++F SM R++ +KP  
Sbjct: 314 QHGRAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGV 373

Query: 470 MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
            HY C ++LL R G L EA  LI   P++  +  W ALL+AC+ + + ++    A+ L  
Sbjct: 374 QHYTCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLE 433

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           + P+  S Y++L N+Y  + K    A+V + +    +R +P  SW+E  ++  +F +G+ 
Sbjct: 434 LRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEV 493

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINT 648
                +EI   ++ ++ E+ K GYVP+  +++ D++E E ++ L  HSE+LAVAFG++ +
Sbjct: 494 PLDVGEEITCFLEELVSEMRKRGYVPDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKS 553

Query: 649 SDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
              + +++V++ R+C DCH  +K I+ +  R+I+VRDASRFHHF+DG CSC ++W
Sbjct: 554 PPGSVIRVVKNLRVCGDCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSCSEFW 608



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 197/431 (45%), Gaps = 43/431 (9%)

Query: 52  RSFQRVECCLMEQGLKPRPK-PNKIYTEELKESSLPDTQMKKPSAG-----ICSQIEKLV 105
           R+ +RV   L+++GL   P  P  + +   +   LPD +     A      + S +   V
Sbjct: 18  RAVRRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAV 77

Query: 106 LNKRYRE-ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
            +    E  L L   +  +           +L SA   LRS+R  +++ ++  ++ +  D
Sbjct: 78  SHSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSAD 137

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFD-------------------------------EMPE 193
             +++ ++ M+ +CG+  DAR++FD                                MP 
Sbjct: 138 NVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPA 197

Query: 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDL-WEEFSDCGSRTFATMIRASAGLELISVGKQ 252
             L +   +I+G + +G+Y  A  LF+++  ++     +   AT+I  +A L  + +G+Q
Sbjct: 198 HGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQ 257

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           LH   +++GF  ++ V  AL+DMYSKC  I  A+ VF+ ++ +  + W TI+ G A HG 
Sbjct: 258 LHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGR 317

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANS 371
           +EE   LY  M  +G+K +  TF  +I  C+    ++  +Q    + R +G    +   +
Sbjct: 318 AEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYT 377

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
             +D  S+ G + +A  +   M  + +  +W AL++    H   +  + + + +L   +R
Sbjct: 378 CYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLL--ELR 435

Query: 431 PNHVTFLAVLS 441
           P   +   +LS
Sbjct: 436 PKDPSTYILLS 446


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  367 bits (943), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 194/508 (38%), Positives = 295/508 (58%), Gaps = 36/508 (7%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            TF  ++++ A   L+ +G+ +H+  L+ G   + FV  +LI MYS CG++  A+ VFDE
Sbjct: 65  HTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDE 124

Query: 292 -------------------------------MSEKTTVGWNTIIAGYALHGYSEEALDLY 320
                                          M E+  + W+ +I GY   G  +EAL L+
Sbjct: 125 IPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALF 184

Query: 321 YEMRDSGV---KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377
            EM+  GV   + + FT S ++  C RL +LEH K AHA + + G  +D+V  +AL+D Y
Sbjct: 185 REMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMY 244

Query: 378 SKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           +K G +E A  VF  +   K+V++W+A+I+G   HG  EE V LF +M+  G+RPN VTF
Sbjct: 245 AKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTF 304

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
           LAV  AC   GL   G +  + M+ D+ I P   HY CM++L GR G + EA+ +++  P
Sbjct: 305 LAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMP 364

Query: 497 FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
            +    +W ALL+  R++G++E  + A +KL  +EP     YV+L N+Y   G+ ++   
Sbjct: 365 MEPDVLVWGALLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRH 424

Query: 557 VIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPE 616
           V   +   G++ +P CS IEV    H F  GD SH +T++I+  ++ ++  +   GYV  
Sbjct: 425 VRDLMETMGIKKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGN 484

Query: 617 EKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAM 675
            K +L D+DE+ ++  LS HSEKLA+A+G + TS  TP++IV++ RIC DCH AIK+I+ 
Sbjct: 485 TKEVLLDLDEEGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISK 544

Query: 676 VTGREIVVRDASRFHHFKDGMCSCGDYW 703
           V  REI+VRD +RFHHF  G+CSC DYW
Sbjct: 545 VFDREIIVRDCNRFHHFTQGLCSCRDYW 572



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 132/275 (48%), Gaps = 36/275 (13%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           +PDL   N ++  + + G++  AR LF  MPERN++S + +I G +  G Y EA  LF  
Sbjct: 127 QPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALF-- 184

Query: 222 LWEEFSDCGSR-------TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274
              E    G         T + ++ A   L  +  GK  H+   K G   +V +  ALID
Sbjct: 185 --REMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALID 242

Query: 275 MYSKCGSIEDAQGVFDEM-SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           MY+KCGS+E A  VF  +   K  + W+ +I+G A+HG +EE + L+ +M + GV+ +  
Sbjct: 243 MYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAV 302

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHG------------FGLDIVANSALVDFYSKWG 381
           TF  +   C            H GLV  G                I     +VD Y + G
Sbjct: 303 TFLAVFCACV-----------HGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAG 351

Query: 382 RIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGE 415
           RI++A +V   M +  +V+ W AL++G   HG  E
Sbjct: 352 RIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIE 386



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 140/342 (40%), Gaps = 85/342 (24%)

Query: 300 WNTIIAGYA-----LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA 354
           WNT+I  +        G +   + ++  MR  GV+ D  TF  +++     + L   +  
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 355 HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK---------------------- 392
           HA ++R G  +D    ++L+  YS  G +  AR VFD+                      
Sbjct: 87  HAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQAGLV 146

Query: 393 ---------MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL---NGMRPNHVTFLAVL 440
                    M  +NVISW+ +I GY   G+ +EA+ LF +M +   N +RPN  T   VL
Sbjct: 147 DMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMSGVL 206

Query: 441 SACSRSGLSERG-WE----------------------------------IFQSMSRDHKI 465
           +AC R G  E G W                                   +F ++  +  +
Sbjct: 207 AACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKDV 266

Query: 466 KPRAMHYACMIELLGREGLLDEA---FALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
               M ++ MI  L   GL +E    F+ +     +     + A+  AC   G +  GK 
Sbjct: 267 ----MAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGKD 322

Query: 523 AAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
              ++   Y + P  + +Y  ++++Y  +G++KEA  V++++
Sbjct: 323 YLRRMTEDYSIIP-TIQHYGCMVDLYGRAGRIKEAWNVVKSM 363


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 202/572 (35%), Positives = 318/572 (55%), Gaps = 9/572 (1%)

Query: 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL 196
           +  C     +  +K +  Y L   F  D  + N  +  + +CG +  A+R+F  +  + L
Sbjct: 386 VPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTL 445

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG----SRTFATMIRASAGLELISVGKQ 252
            S N +I G   S D      L LD   +  + G    + T  +++ A + L+ + +GK+
Sbjct: 446 NSWNALIGGYAQSSDPR----LSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKE 501

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
           +H   ++     ++FV  +++ +Y  CG +   Q +FD M + + V WNT+I G+  +G+
Sbjct: 502 VHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGF 561

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372
            E AL L+ +M   G++    +   +   C+ L SL   ++AHA  ++H    +     +
Sbjct: 562 PERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACS 621

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           ++D Y+K G I  +  VF+ +  K+  SWNA+I GYG HGR +EA++LFE+M   G  P+
Sbjct: 622 IIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPD 681

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            +TFL VL+AC+ SGL   G      M     +KP   HYAC+I++LGR G LD A  + 
Sbjct: 682 DLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVA 741

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552
                +    +W +LL+ CR++ NLE+G+  A KL+ +EPEK  NYV+L N+Y   GK  
Sbjct: 742 AEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWD 801

Query: 553 EAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612
           +  +V + ++   LR    CSWIE+  +   F+ G++     +EI      + ++I K G
Sbjct: 802 DVRQVRQRMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMG 861

Query: 613 YVPEEKTLLPDVDEQEQ-RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIK 671
           Y P+  ++  D+ E+E+   L  HSEKLA+ +GLI TS+ T L++ ++ RIC DCHNA K
Sbjct: 862 YRPDTSSVQHDLSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAK 921

Query: 672 LIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           LI+ V  REIVVRD  RFHHF  G CSCGDYW
Sbjct: 922 LISKVMEREIVVRDNKRFHHFNKGFCSCGDYW 953



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 200/386 (51%), Gaps = 30/386 (7%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER 194
           +L+SAC  L+S+R  K V  +++    E DL++   VL +++ CG +   + LFD M + 
Sbjct: 485 SLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDN 544

Query: 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDL-WEEFSDCGSRTFATMIRASAGLELISVGKQL 253
           +LVS N +I G + +G    A  LF  +       CG  +  T+  A + L  + +G++ 
Sbjct: 545 SLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGI-SMMTVFGACSLLPSLRLGREA 603

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS 313
           H+ ALK    DN F++C++IDMY+K G+I  +  VF+ + EK+   WN +I GY +HG +
Sbjct: 604 HAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRA 663

Query: 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL--DIVANS 371
           +EA+ L+ EM+ +G   D  TF  ++  C   + L H    +   ++  FGL  ++   +
Sbjct: 664 KEAIKLFEEMQRTGRNPDDLTFLGVLTACNH-SGLLHEGLRYLDQMKSSFGLKPNLKHYA 722

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAG---YGNHGRGEE-AVELFEQMLL 426
            ++D   + G++++A  V  +M  + +V  WN+L++    + N   GE+ A +LF   +L
Sbjct: 723 CVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLF---VL 779

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGW-EIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485
              +P +   L+ L A    GL +  W ++ Q   R  ++  R       IEL G+    
Sbjct: 780 EPEKPENYVLLSNLYA----GLGK--WDDVRQVRQRMKEMSLRKDAGCSWIELNGK---- 829

Query: 486 DEAFALIRGA----PFKTTKNMWAAL 507
              F+ + G      F+  K++W+ L
Sbjct: 830 --VFSFVVGERFLDGFEEIKSLWSIL 853



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 179/402 (44%), Gaps = 33/402 (8%)

Query: 62  MEQGLKPRPKPNKI--YTEELKESSLPDTQMKKPSAGICSQIEKLVLNK--RYREALEL- 116
           M   L P P+ + +  Y    KESS P       +    S      L +   + E  +L 
Sbjct: 1   MASVLLPLPQLSVLFDYRRSRKESSFPRADYNSNAISSNSTNANHFLRRISNFCETGDLD 60

Query: 117 --FEILEFEGGFDVGSSTYDALISACIGL-------RSIREVKRVFSYMLS--TGFEPDL 165
             F +++   G D  SS    L+   +GL       R   E+ R   +++S  T    D 
Sbjct: 61  KSFRVVQEFAGDDESSSDVFLLVREALGLLLQASGKRKDIEMGRKIHHLVSGSTRLRSDD 120

Query: 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225
            +  R++ M+  CG   D+R  FD +  +NL   N +I+    +  Y E   +F+ +  +
Sbjct: 121 VLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISK 180

Query: 226 FSDCGSR-TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
                   TF  +I+A AG+  + +G  +H   +K G  +++FV  AL+  Y   G + D
Sbjct: 181 THLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSD 240

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM-DHFTFSMIIRICT 343
           A  +FD M E+  V WN++I  ++ +G             D G  M D  T   ++ +C 
Sbjct: 241 ALKLFDIMPERNLVSWNSMIRVFSDNG-------------DDGAFMPDVATVVTVLPVCA 287

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
           R   +   K  H   V+     ++V N+AL+D YSKWG I D++ +F     KNV+SWN 
Sbjct: 288 REREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNT 347

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNG--MRPNHVTFLAVLSAC 443
           ++ G+   G      +L  QML     ++ + VT L  +  C
Sbjct: 348 MVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVC 389


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 212/611 (34%), Positives = 345/611 (56%), Gaps = 18/611 (2%)

Query: 105  VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
            VLN   + +L LF  +  +G +     T+   + AC  L ++ +  ++  + L  GFE  
Sbjct: 454  VLNGDLKGSLSLFSEMGRQGIYP-NEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMM 512

Query: 165  LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
            + + N ++ M+ +CG + +A ++F  + +R+L+S N +IAG + +G   +A   F  + E
Sbjct: 513  VEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQE 572

Query: 225  EFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGF--GDNVFVSCALIDMYSK 278
              ++   R    T  ++++A +   +I  GKQ+H   ++ GF    +  ++ +L+D+Y K
Sbjct: 573  --ANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVK 630

Query: 279  CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            CG +  A+  FD++ EKT + W+++I GYA  G   EA+ L+  +++   ++D F  S I
Sbjct: 631  CGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSI 690

Query: 339  IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
            I +    A L   KQ  A  V+   GL+    +++VD Y K G +++A   F +M  K+V
Sbjct: 691  IGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDV 750

Query: 399  ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
            ISW  +I GYG HG G+++V +F +ML + + P+ V +LAVLSACS SG+ + G E+F  
Sbjct: 751  ISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSK 810

Query: 459  MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
            +   H IKPR  HYAC+++LLGR G L EA  LI   P K    +W  LL+ CRV+G++E
Sbjct: 811  LLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIE 870

Query: 519  LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
            LGK   + L  ++ +  +NYV++ N+Y  +G   E          KGL+     SW+E++
Sbjct: 871  LGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIE 930

Query: 579  KQPHVFLSGDQSHVQT---KEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSY 634
            ++ H F SG+ SH  T   +E  ++ +R + E  + GYV   K  L D+ DE ++  L  
Sbjct: 931  REVHFFRSGEDSHPLTPVIQETLKEAERRLRE--ELGYVYGLKHELHDIDDESKEENLRA 988

Query: 635  HSEKLAVAFGLIN---TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHH 691
            HSEKLA+   L           +++ ++ R+C DCH  IK ++ +T    VVRDA RFH 
Sbjct: 989  HSEKLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHS 1048

Query: 692  FKDGMCSCGDY 702
            F+DG CSCGDY
Sbjct: 1049 FEDGCCSCGDY 1059



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/407 (29%), Positives = 211/407 (51%), Gaps = 15/407 (3%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           +L   N ++ M+ +C   + A ++FD MPERN+VS + +++G + +GD   +  LF ++ 
Sbjct: 411 NLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMG 470

Query: 224 EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283
            +       TF+T ++A   L  +  G Q+H   LK+GF   V V  +L+DMYSKCG I 
Sbjct: 471 RQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRIN 530

Query: 284 DAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK--MDHFTFSMIIRI 341
           +A+ VF  + +++ + WN +IAG+   GY  +ALD +  M+++ +K   D FT + +++ 
Sbjct: 531 EAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKA 590

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLDIVA--NSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
           C+    +   KQ H  LVR GF     A    +LVD Y K G +  AR  FD++  K +I
Sbjct: 591 CSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMI 650

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           SW++LI GY   G   EA+ LF+++     + +     +++   +   L  +G ++ Q++
Sbjct: 651 SWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQM-QAL 709

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
           +              ++++  + GL+DEA         K   + W  ++T    +G   L
Sbjct: 710 AVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVIS-WTVVITGYGKHG---L 765

Query: 520 GKFAAEKLYGM-----EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           GK +    Y M     EP+++  Y+ +L+  + SG +KE  E+   L
Sbjct: 766 GKKSVRIFYEMLRHNIEPDEVC-YLAVLSACSHSGMIKEGEELFSKL 811



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 52/91 (57%)

Query: 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQM 424
           L+++ ++ L+D Y K      A  VFD M  +NV+SW+AL++G+  +G  + ++ LF +M
Sbjct: 410 LNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEM 469

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
              G+ PN  TF   L AC      E+G +I
Sbjct: 470 GRQGIYPNEFTFSTNLKACGLLNALEKGLQI 500


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 206/589 (34%), Positives = 327/589 (55%), Gaps = 36/589 (6%)

Query: 130 SSTYDALISA---CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186
           ++TY+ L++      G   + + +R+F  +      PD    N +L  H  CG +  A R
Sbjct: 38  TTTYNCLLAGYAKASGPGRLADARRLFDSIP----HPDAVSYNTLLSCHFACGDIDGAWR 93

Query: 187 LFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246
           +F  MP R++ S N +++G+  +G   EA  +F  +     +  S       RAS+G   
Sbjct: 94  VFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAM--PARNAVSWNAMVAARASSG--- 148

Query: 247 ISVGKQLHSCALKMGFGDNVFVSC----------ALIDMYSKCGSIEDAQGVFDEMSEKT 296
                        MG  +N+F +           A++  Y   G+++ A   F  M  + 
Sbjct: 149 ------------DMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRN 196

Query: 297 TVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355
            V WN ++AGY  +  + +AL ++  M  D+ V+ +  T S ++  C+ L++L   +Q H
Sbjct: 197 LVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVH 256

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
              ++   G  I   ++L+  Y K G ++DA  +FD+M  K++++WNA+I+GY  HG G 
Sbjct: 257 QWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGR 316

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
           +A++LFE+M   G+ P+ +T LAVL+AC  +GL + G + F++M   + I+P+  HY+CM
Sbjct: 317 KAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCM 376

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535
           ++LL R GLL+ A  +I   PF+   + +  LLTACRV  NLE  +FAA KL   +P+  
Sbjct: 377 VDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNA 436

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTK 595
             YV L NIY  + +  + + V R ++   +   P  SW+E+K   H F S D+ H Q  
Sbjct: 437 GAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLD 496

Query: 596 EIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPL 654
            I+ K+DR+   +   GY P+    L DV+E  + ++L  HSEKLA+AFGLI+TS    L
Sbjct: 497 LIHDKLDRLGKLMKAMGYSPDLDFALHDVEESLKSQMLMRHSEKLAIAFGLISTSPGMTL 556

Query: 655 QIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +I ++ RIC DCHNA KLI+ +  REI++RD +RFHHF+ G CSCGDYW
Sbjct: 557 RIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 605



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 62/125 (49%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +   V N R  +AL +F+ +  +       ST  +++  C  L ++   ++V  + +   
Sbjct: 204 VAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLP 263

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
               + +   +L M+ +CG + DA +LFDEM  +++V+ N +I+G    G   +A  LF 
Sbjct: 264 LGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFE 323

Query: 221 DLWEE 225
            + +E
Sbjct: 324 KMKDE 328



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 139/340 (40%), Gaps = 30/340 (8%)

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+  F     KTT  +N ++AGYA         D    + DS    D  +++ ++     
Sbjct: 26  AEEAFASTQLKTTTTYNCLLAGYAKASGPGRLADA-RRLFDSIPHPDAVSYNTLLSCHFA 84

Query: 345 LASLEHAKQAHAGL-VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
              ++ A +  + + VR     D+ + + +V   SK G IE+A  +F  M  +N +SWNA
Sbjct: 85  CGDIDGAWRVFSTMPVR-----DVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWNA 139

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           ++A   + G    A  LF        + + + + A++S    +G  ++  E F++M   +
Sbjct: 140 MVAARASSGDMGAAENLFRNA---PEKTDAILWTAMVSGYMDTGNVQKAMEYFRAMPVRN 196

Query: 464 KIKPRAMHYACMIELLGREGLLDEAF-ALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522
            +   A+    +     R G     F  ++  A  +   +  +++L  C     L  G+ 
Sbjct: 197 LVSWNAVVAGYVKN--SRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQ 254

Query: 523 AAEKLYGME-PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQP 581
             +    +     ++    LL++Y   G L +A ++   +  K +      +W       
Sbjct: 255 VHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDI-----VAW------- 302

Query: 582 HVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLL 621
           +  +SG   H       RK  ++  ++   G VP+  TLL
Sbjct: 303 NAMISGYAQHGGG----RKAIKLFEKMKDEGVVPDWITLL 338


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 203/613 (33%), Positives = 344/613 (56%), Gaps = 17/613 (2%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N +   A+E+F  +   G F   + T    ++AC  L SI   K+  ++++      D
Sbjct: 57  VQNSQPEVAVEVFGDMLESGSFP-SNFTLSIALNACSSLESITLGKQFHAFIIKYRISHD 115

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
             + N +  ++ + G +  + + F E  E++++S   II+   D+G       LF+++  
Sbjct: 116 SSIGNALCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLF 175

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
           E  +    T  +++   + ++   +G Q+HS + K+G   N+ ++ +L+ +Y KCG I++
Sbjct: 176 ENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDE 235

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYA-----------LHGYSEEALDLYYEMRDSGVKMDHF 333
           A+ +F+ M  K  + WN +IAG+A                 EAL +Y ++  SG K D F
Sbjct: 236 AKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLF 295

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           T S I+ +C+RLA+LE  +Q HA  ++ GF  D+V  +ALVD Y K G IE AR  F  M
Sbjct: 296 TLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDM 355

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             + +ISW ++I  +  HG+ + A++LFE M L G RPN +TF+ VL+ACS +G+ +   
Sbjct: 356 STRTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEAL 415

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           E F+ M +++KIKP   HY C++++  R G LDEAF +I+    +  + +W  L+  CR 
Sbjct: 416 EYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDVIKRMDVEPNEFIWLLLIAGCRN 475

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACS 573
           +GN ELG +AAE+L  ++P     YVVLLN+Y S+ + ++ + V R ++ + +  L   S
Sbjct: 476 HGNEELGFYAAEQLLKLKPRSTETYVVLLNMYISAERWEDVSMVRRLMKEEKVGKLKDWS 535

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPD--VDEQEQRV 631
            I +K + H F + ++ H    E++  ++ ++      GY   E   + D   +E E++ 
Sbjct: 536 RISIKGEVHSFKTNNRLHNHNAELHTLLNDLVDRAKSLGYEQLENMEVIDDEEEEAEEKA 595

Query: 632 LS---YHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
            S   YHSEKLAV FGL+NT    P+++++S  +C DCH+ +K+++  T R I+++D  R
Sbjct: 596 FSSAVYHSEKLAVTFGLLNTPIGAPIRVIKSVTMCKDCHDFMKVVSSQTTRHIIIKDGKR 655

Query: 689 FHHFKDGMCSCGD 701
            H F +G CSC D
Sbjct: 656 LHKFVNGQCSCAD 668



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 227/457 (49%), Gaps = 48/457 (10%)

Query: 152 VFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGD 211
           V ++++ TG   + ++ + ++ ++ +CG+M++AR++FD +P RN+V    ++ G + +  
Sbjct: 2   VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQ 61

Query: 212 YLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCA 271
              A  +F D+ E  S   + T +  + A + LE I++GKQ H+  +K     +  +  A
Sbjct: 62  PEVAVEVFGDMLESGSFPSNFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNA 121

Query: 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
           L  +YSK GS++ +   F E  EK  + W TII+    +G +   L L+ EM    V+ +
Sbjct: 122 LCSLYSKFGSLDSSVKAFRETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEPN 181

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD 391
            FT + ++ +C+ + S +   Q H+   + G   ++   ++LV  Y K G I++A+++F+
Sbjct: 182 DFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLFN 241

Query: 392 KMLCKNVISWNALIAGYGN-----------HGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440
           +M  KN+I+WNA+IAG+                G EA+ ++ ++  +G +P+  T  ++L
Sbjct: 242 RMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNRSGRKPDLFTLSSIL 301

Query: 441 SACSRSGLSERGWEIFQ-------------------------SMSRDHK----IKPRAM- 470
           + CSR    E+G +I                           S+ R  K    +  R + 
Sbjct: 302 TVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDMYDKCGSIERARKAFLDMSTRTLI 361

Query: 471 HYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWAALLTACRVNGNLE--LGKFA-A 524
            +  MI    R G    A  L   +R A F+  +  +  +L AC   G ++  L  F   
Sbjct: 362 SWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALEYFEIM 421

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           +K Y ++P  + +Y  L++++   G+L EA +VI+ +
Sbjct: 422 QKEYKIKP-VMDHYGCLVDMFVRLGRLDEAFDVIKRM 457


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 209/569 (36%), Positives = 318/569 (55%), Gaps = 49/569 (8%)

Query: 176 VRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW------EEFSDC 229
           VR G++ +ARRL  + PERN+VS   +IAG   +G   +A   F  +       +E +  
Sbjct: 182 VRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVI 241

Query: 230 GSRTFATMIR--ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
           G+ +  + ++      L  + VG++      ++   DN+ V  ALIDMY+KCG I  AQ 
Sbjct: 242 GALSACSKLKNLDLGRLLHLLVGQK------RIRMTDNLVV--ALIDMYAKCGDIAQAQA 293

Query: 288 V--------------------------------FDEMSEKTTVGWNTIIAGYALHGYSEE 315
           V                                FD+M  +  + +N++I GY   G   +
Sbjct: 294 VFDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRD 353

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           AL L+ +MR  G++ D+FT   ++  C  L +L H +  HA + +     D+   +AL+D
Sbjct: 354 ALQLFMQMRRHGMRADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLD 413

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            Y K GR+++A  VF +M  ++V +W A+IAG   +G G++A+E F QM  +G +P  VT
Sbjct: 414 MYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVT 473

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
           ++AVL+ACS S L + G   F  M   HK+ P+  HY CMI+LL R GLLDEA  L++  
Sbjct: 474 YIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTM 533

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           P +    +W ++L+ACRV+ N++L + AAE L  + PE+ + YV L NIY  S +  +A 
Sbjct: 534 PMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAK 593

Query: 556 EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
            V   +  +G++     S I V  Q H F++ DQSH  T EI   ++ +   +   GY P
Sbjct: 594 RVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYSP 653

Query: 616 EEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
               +  DVDE+E ++ L  HSEK+A+AFGLI+     P+ IV++ R+C DCH+AIKL++
Sbjct: 654 VTSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIKLVS 713

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            +  REI+VRD SRFHHF+DG CSC D+W
Sbjct: 714 QLWNREIIVRDRSRFHHFRDGACSCNDFW 742



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 149/299 (49%), Gaps = 11/299 (3%)

Query: 134 DALISACIGLRS----IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           D L+ A I + +    I + + VF   +  G +P+ +  N ++  + + G +  AR LFD
Sbjct: 272 DNLVVALIDMYAKCGDIAQAQAVFD-AVGRGQKPEPW--NAIIDGYCKLGHVDVARSLFD 328

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
           +M  R++++ N +I G I SG   +A  LF+ +        + T  +++ A A L  +  
Sbjct: 329 QMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTACASLGALPH 388

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G+ LH+   +    ++V++  AL+DMY KCG +++A  VF  M E+    W  +IAG A 
Sbjct: 389 GRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAF 448

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR--HGFGLDI 367
           +G  ++AL+ + +M+  G +    T+  ++  C+  + L+  +  H   +R  H     +
Sbjct: 449 NGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGR-LHFNEMRSLHKLHPQV 507

Query: 368 VANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
                ++D  ++ G +++A H+   M +  N + W ++++    H   + A    E +L
Sbjct: 508 EHYGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSACRVHKNIDLARHAAEHLL 566



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 167/394 (42%), Gaps = 100/394 (25%)

Query: 267 FVSCALIDMYSKCGSIEDAQGVFDEM-------------------------------SEK 295
            V+  LI MY+  G  +DA+  FDE+                                E+
Sbjct: 141 LVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPER 200

Query: 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE------ 349
             V W ++IAGY+  G   +A+  +  M   GV  D       +  C++L +L+      
Sbjct: 201 NVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPDEVAVIGALSACSKLKNLDLGRLLH 260

Query: 350 ---------------------HAK-----QAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383
                                +AK     QA A     G G      +A++D Y K G +
Sbjct: 261 LLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGHV 320

Query: 384 EDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443
           + AR +FD+M  ++VI++N++I GY + GR  +A++LF QM  +GMR ++ T +++L+AC
Sbjct: 321 DVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTAC 380

Query: 444 SRSGLSERGWEIFQSMSRD-----------------------------HKIKPRAMH-YA 473
           +  G    G  +  S+ +                              H++  R +H + 
Sbjct: 381 ASLGALPHGRALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWT 440

Query: 474 CMIELLGREGLLD---EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF---AAEKL 527
            MI  L   G+     E+F  ++   F+ T   + A+LTAC  +  L+ G+        L
Sbjct: 441 AMIAGLAFNGMGKDALESFCQMKRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSL 500

Query: 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           + + P+ + +Y  ++++   SG L EA  +++T+
Sbjct: 501 HKLHPQ-VEHYGCMIDLLARSGLLDEAMHLVQTM 533



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 136/317 (42%), Gaps = 43/317 (13%)

Query: 288 VFDEMSEKTTVGWNTII-AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR------ 340
           +FD +   TT  ++T + A       ++  + L   MR  GV+   FTF  + R      
Sbjct: 57  LFDRLPHSTTFLFDTALRACLQASAGADHPVLLLRRMRSGGVRTGAFTFHFVFRCCAAGA 116

Query: 341 -----ICTRL--ASLEHAKQAHAGLV-----------------RHGF----GLDIVANSA 372
                +C  L  A L     + A LV                 R  F      D V  + 
Sbjct: 117 RARAGLCLMLHAACLRTMLPSAAPLVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWAT 176

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           ++    +WG +++AR +  +   +NV+SW +LIAGY   GR  +AV  F  ML +G+ P+
Sbjct: 177 VIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGVAPD 236

Query: 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492
            V  +  LSACS+    + G  +   + +  +I+        +I++  + G + +A A+ 
Sbjct: 237 EVAVIGALSACSKLKNLDLGRLLHLLVGQK-RIRMTDNLVVALIDMYAKCGDIAQAQAVF 295

Query: 493 RGAPFKTTKNMWAALLTACRVNGNLELGKF-AAEKLYG-MEPEKLSNYVVLLNIYNSSGK 550
                      W A+     ++G  +LG    A  L+  M    +  +  ++  Y  SG+
Sbjct: 296 DAVGRGQKPEPWNAI-----IDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGR 350

Query: 551 LKEAAEVIRTLRRKGLR 567
           L++A ++   +RR G+R
Sbjct: 351 LRDALQLFMQMRRHGMR 367


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 209/601 (34%), Positives = 324/601 (53%), Gaps = 41/601 (6%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMM-ID-ARRLFDEMPERNLVSCNM 201
            ++++  R+ S M+ TGF  D +  +R+L        + +D + ++FD +   N    N 
Sbjct: 40  HNLKQFNRILSQMILTGFISDTFAASRLLKFSTDSPFIGLDYSLQIFDRIENSNGFMWNT 99

Query: 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG 261
           ++   I S    +A LL+  + +      + T+  +++A A   L   GK++H   LK+G
Sbjct: 100 MMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVG 159

Query: 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDE------------------------------ 291
           F  +V+V   LI+MY+ CG++ DA+ +FDE                              
Sbjct: 160 FDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVMEAWK 219

Query: 292 ----MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
               M EK  V W+ +I+GY  +G  EEAL ++ EM  +G+++D      ++  C  L+ 
Sbjct: 220 LFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRLDEVVVVSVLSACAHLSI 279

Query: 348 LEHAKQAHAGLVRHGFGLDIVANSALV----DFYSKWGRIEDARHVFDKMLCKNVISWNA 403
           ++  K  H  ++R G    +   +AL+    D Y K G +E+A  VF+ M  K V SWNA
Sbjct: 280 VKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCVENALEVFNGMEEKGVSSWNA 339

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           LI G   +G  E ++++F +M  NG+ PN +TF+ VL AC   GL + G   F SM   H
Sbjct: 340 LIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKH 399

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            I+P   HY CM++LLGR GLL+EA  LI   P       W ALL AC+ +G+ E+G+  
Sbjct: 400 GIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERV 459

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
             KL  ++P+    +V+L NI+ S G  ++  EV   ++++G+   P CS IE     H 
Sbjct: 460 GRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHE 519

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVA 642
           FL+GD++H    ++   ++ M   +   GY P+   +  D+DE+E+   L  HSEKLA+A
Sbjct: 520 FLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIA 579

Query: 643 FGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDY 702
           FGL+  S  TP++I+++ RIC DCH A KLI+    REIVVRD  RFH+FK+G CSC DY
Sbjct: 580 FGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDY 639

Query: 703 W 703
           W
Sbjct: 640 W 640



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/354 (27%), Positives = 172/354 (48%), Gaps = 50/354 (14%)

Query: 132 TYDALISACIGLRSIREV----KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRL 187
           TY  ++ AC    ++R +    K +  ++L  GF+ D+Y++N ++ M+  CG M DAR+L
Sbjct: 131 TYPLVVQAC----AVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKL 186

Query: 188 FDEMPERNLVSCNMIIAGMIDSGD----------------------------------YL 213
           FDE P  + VS N I+AG +  GD                                  Y 
Sbjct: 187 FDESPVLDSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYE 246

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA ++F+++             +++ A A L ++  GK +H   ++MG    V +  ALI
Sbjct: 247 EALVMFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALI 306

Query: 274 ----DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329
               DMY KCG +E+A  VF+ M EK    WN +I G A++G  E +LD++ EM+++GV 
Sbjct: 307 HMYSDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVI 366

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLV-RHGFGLDIVANSALVDFYSKWGRIEDARH 388
            +  TF  ++  C  +  ++  +   A ++ +HG   ++     +VD   + G + +A  
Sbjct: 367 PNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEK 426

Query: 389 VFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
           + + M +  +V +W AL+     HG  E    +  +++   ++P+H  F  +LS
Sbjct: 427 LIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLI--ELQPDHDGFHVLLS 478


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 197/529 (37%), Positives = 298/529 (56%), Gaps = 39/529 (7%)

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269
           G  L A  L  D+  +     + T +  + A  GL   S G+ LH  A K+    + +V+
Sbjct: 368 GHRLPALALLSDMLAQGLLPTAHTLSASLPACRGL---SPGRALHGYAFKLALAGDSYVA 424

Query: 270 CALIDMYSKCG--------------------------------SIEDAQGVFDEMSEKTT 297
            AL+ MY++ G                                +++DA+ +FD +  K  
Sbjct: 425 TALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDF 484

Query: 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357
           V WN +I GY  HG   EAL L+  M  SGV+ D  T  +++    +L ++E  K  H+ 
Sbjct: 485 VCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHS- 543

Query: 358 LVRHG--FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
            V++     L +   +AL+D Y K G + DA  VF  +  K+++ WNA+I GY  HG   
Sbjct: 544 YVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSR 603

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
           +A+E+F Q    G+ P  +TF+ +L+ACS SG+ E G E FQSM R++ I P+  HY CM
Sbjct: 604 KALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCM 663

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535
           ++LLGR GL+ EAF L++         MW +LL ACR++ N+ LG+  A+ L        
Sbjct: 664 VDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANS 723

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTK 595
             Y++L NIY + G   E A V   ++  G++  P CS IE+ ++ + F++GD SH +T 
Sbjct: 724 GMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRTD 783

Query: 596 EIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSDWTPL 654
           EIY  +D+M   + +HG+VP+ + +L D+DE  +++ L+ HSEKLA+AFGLI+T     +
Sbjct: 784 EIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFGLISTQPGATI 843

Query: 655 QIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +IV++ R C DCH  +KLI+ +TGR+IV RD +RFHHF DG CSCGDYW
Sbjct: 844 KIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 135/284 (47%), Gaps = 8/284 (2%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           + +F  ML    +P +     +L  +   G + DAR LFD +P ++ V  N +I G    
Sbjct: 441 RALFDDMLP---DPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQH 497

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS-CALKMGFGDNVFV 268
           G   EA  LF  +     +    T   ++ A A L  +  GK LHS          +V V
Sbjct: 498 GRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRRVQLSVRV 557

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
             ALIDMY KCGS+ DA  VF  + +K  V WN +I GYA+HG S +AL+++ + R+ G+
Sbjct: 558 GTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMFVQSREQGL 617

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD--IVANSALVDFYSKWGRIEDA 386
                TF  ++  C+    +E  ++    + R  +G+D  I     +VD   + G I++A
Sbjct: 618 WPTDITFIGLLNACSHSGMVEEGREFFQSMERE-YGIDPKIEHYGCMVDLLGRAGLIKEA 676

Query: 387 RHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429
             +   M +  + + W +L+A    H       ++ + ++  G+
Sbjct: 677 FCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGL 720


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 232/722 (32%), Positives = 368/722 (50%), Gaps = 47/722 (6%)

Query: 26  FTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECCLMEQGL--KPRPKPNKIYTE-ELKE 82
            TAN   + KS  S     +DK   K+  +++   ++  GL   P P   K++T   L  
Sbjct: 20  LTANN--EQKSNPSTVPILIDKCANKKHLKQLHAHMLRTGLFFDP-PSATKLFTACALSS 76

Query: 83  SSLPD------TQMKKPSAGICSQ-IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDA 135
            S  D       Q+ +P+    +  I     + +  + L +F  +  E      S T+  
Sbjct: 77  PSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPF 136

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           +I A   + S+   + +   ++   F  DL++ N ++  +   G +  A  +F ++ E++
Sbjct: 137 VIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKD 196

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
           +VS N +I+G +  G   EA  LF  +  E +     T   ++ A A    +  G+    
Sbjct: 197 IVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACD 256

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA------- 308
              + G   N+ +S A++DMY KCGS+EDA+ +FD+M EK  V W T+I GYA       
Sbjct: 257 YIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDA 316

Query: 309 ------------------------LHGYSEEALDLYYEMR-DSGVKMDHFTFSMIIRICT 343
                                    +G  +EAL ++ E++ +   K +  T +  +  C 
Sbjct: 317 ARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACA 376

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
           +L +++     H  + + G  L+    ++L+D YSK G +E A  VF  +  ++V  W+A
Sbjct: 377 QLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSA 436

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           +IAG   HG G  A++LF +M    ++PN VTF  +L ACS SGL + G   F  M   +
Sbjct: 437 MIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVY 496

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            + P + HYACM+++LGR G L+EA  LI   P   + ++W ALL ACR+ GN+EL + A
Sbjct: 497 GVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMA 556

Query: 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHV 583
             +L   +      YV+L NIY  +GK    + + + ++  GL   P CS IEV    H 
Sbjct: 557 CSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHE 616

Query: 584 FLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ--EQRVLSYHSEKLAV 641
           FL GD SH  + EIY K+D ++  I   GYV +E  LL  V+E+  ++  L+ HSEKLA+
Sbjct: 617 FLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAI 676

Query: 642 AFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701
           A+GLI      P++IV++ R+C DCH+  KLI+ +  R+I++RD  RFHHF  G CSC D
Sbjct: 677 AYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMD 736

Query: 702 YW 703
           YW
Sbjct: 737 YW 738


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 192/592 (32%), Positives = 331/592 (55%), Gaps = 36/592 (6%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMII 203
           +S+  + ++ + +L  G   +  +  ++   +   G +  +  +F+   E N+ S + II
Sbjct: 58  KSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAII 117

Query: 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263
              + S  +  AF  +  +     +  + TF++++++ +    +  GK LH  A+K+G G
Sbjct: 118 HSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQAIKLGLG 173

Query: 264 DNVFVSCALIDMY-------------------------------SKCGSIEDAQGVFDEM 292
            +++V   L+D+Y                               SK G ++ A+ +F+ M
Sbjct: 174 SDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGM 233

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            E+  V WN +I GYA  G   E+L L+  M  +    +  T   ++  C +L +LE  +
Sbjct: 234 KERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGR 293

Query: 353 QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412
             H+ +   G  +++   +AL+D YSK G +EDAR VFD++  K+V++WN++I GY  HG
Sbjct: 294 WIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHG 353

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472
             + A++LFE+M   G +P  +TF+ +LSAC   GL E G   F+ M   + I+P+  HY
Sbjct: 354 FSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHY 413

Query: 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532
            CM+ LLGR G L+EA+ L++         +W  LL  CR++ N++LG+  A+ L   + 
Sbjct: 414 GCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKL 473

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHV 592
                YV+L N+Y ++G  +  A++   ++  G+     CS IEV  + H F++G++ H 
Sbjct: 474 ANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHP 533

Query: 593 QTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDW 651
           ++KEIY  ++ +   +   GY P+   +L D+ +EQ+++ L  HSEKLA+AFGLI+T   
Sbjct: 534 KSKEIYVMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPG 593

Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           T ++IV++ R+C DCH  +K+I+ +TGR+IV+RD +RFHHF+DG+CSCGDYW
Sbjct: 594 TTVKIVKNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 164/365 (44%), Gaps = 70/365 (19%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEP---------------------------- 163
           ++ A+I + +  R        +S MLS G EP                            
Sbjct: 112 SFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESGKVLHCQAIKLG 171

Query: 164 ---DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSC--------------------- 199
              DLY+R  ++ ++ R G ++ AR+LFD+MPER+LVS                      
Sbjct: 172 LGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFE 231

Query: 200 ----------NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
                     N++I G   SG   E+  LF  +    +     T   ++ A   L  +  
Sbjct: 232 GMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALES 291

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G+ +HS     G   NV V  ALIDMYSKCGS+EDA+ VFD + +K  V WN++I GYA+
Sbjct: 292 GRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAM 351

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLD--I 367
           HG+S+ AL L+ EM ++G K    TF  I+  C     +E  + +   L+R  +G++  I
Sbjct: 352 HGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGR-SFFRLMRDKYGIEPKI 410

Query: 368 VANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAG---YGNHGRGEEAVE-LFE 422
                +V+   + G +E+A  +   M +  + + W  L+     + N   GEE  + L +
Sbjct: 411 EHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVD 470

Query: 423 QMLLN 427
           Q L N
Sbjct: 471 QKLAN 475


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 176/501 (35%), Positives = 302/501 (60%), Gaps = 2/501 (0%)

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
           G   +G   EA L+++++     + G+  F+T ++A A L  + VG+ +H+  +K   G 
Sbjct: 4   GYSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGP 63

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           +  V+  L+ +Y++C    +   VFD+M E+    WN++I+G+       EALD++  M+
Sbjct: 64  DQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQ 123

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
             G+     T + I+ IC R+ +L   K+ HA +V+     D++  ++LVD Y K G ++
Sbjct: 124 REGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVD 183

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
             R +FD M  K++ SWN ++ GY  +G    A++LF +M   G+RP+ VTF+A+LS CS
Sbjct: 184 YGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCS 243

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
            +GL+E G ++F  M  D  + P   HYAC++++LGR G +D A  +++  P KT+ ++W
Sbjct: 244 HAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIW 303

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
            +LL +CR++  + L +  A +L+ +EP    NYV+L NIY ++G       V   ++ +
Sbjct: 304 GSLLNSCRLHNEVPLAEAIANRLFELEPYNPGNYVMLSNIYANAGMWDSVNMVREMMQTR 363

Query: 565 GLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKV-DRMMLEISKHGYVPEEKTLLPD 623
            +R    CSWI+VK + H F++G     +  + Y+K+ +++   + + GY+P    +L D
Sbjct: 364 RIRKEAGCSWIQVKNKIHSFVAGGGFEFRNSDEYKKIWNKLREAMEEFGYIPNTDVVLHD 423

Query: 624 VDEQEQRV-LSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIV 682
           V+E+ + + +  HSE+LA  F LI+T+   P++I ++ R+C DCH+ IK+++ VTGR IV
Sbjct: 424 VNEETKAMWVCGHSERLATVFSLIHTAAGMPIRITKNLRVCVDCHSWIKIVSRVTGRVIV 483

Query: 683 VRDASRFHHFKDGMCSCGDYW 703
           +RD +RFHHFK+G CSC DYW
Sbjct: 484 LRDTNRFHHFKEGACSCNDYW 504



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 147/301 (48%), Gaps = 3/301 (0%)

Query: 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY 166
           N   REAL L  +       + G+  +   + AC  LR +   + V + ++ +   PD  
Sbjct: 8   NGFLREAL-LVYVEMLWNCMEPGNFAFSTALKACADLRELWVGRGVHAQVVKSSEGPDQV 66

Query: 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF 226
           + N +L ++ +C    +  ++FD+MPERN+ S N +I+G +      EA  +F  +  E 
Sbjct: 67  VNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEALDVFRRMQREG 126

Query: 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286
                 T  T++   A +  +  GK++H+  +K     +V V  +L+DMY KCG ++  +
Sbjct: 127 MGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGR 186

Query: 287 GVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLA 346
            +FD M  K    WNT++ GYA++GY   A+DL+ EM   G++ D  TF  ++  C+   
Sbjct: 187 RLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAG 246

Query: 347 SLEHAKQA-HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS-WNAL 404
             E  ++  H   +  G    +   + LVD   + GRI+ A  V   M  K   S W +L
Sbjct: 247 LTEDGQKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSL 306

Query: 405 I 405
           +
Sbjct: 307 L 307


>gi|326499323|dbj|BAK06152.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 190/476 (39%), Positives = 293/476 (61%), Gaps = 3/476 (0%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           S TF  + +A A L  +  G  +H+ ++ +GFG + FV  AL+ +YSKCG +  A+ +FD
Sbjct: 105 SFTFTAVAKACADLSALRTGAAIHAHSILLGFGSDRFVLTALVVLYSKCGQLGVARKLFD 164

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            + +++ V WN +I+GY  +G +E  + +Y EM+ +    D  TF   +  C +  +L+ 
Sbjct: 165 AIRDRSVVAWNAMISGYEQNGLAERGIGVYKEMQAAKAVPDSMTFVATLSACAQAGALDL 224

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            ++    +V     + +   SALV+ Y++ G ++ AR  FD +  +NV++W ++IAGYG 
Sbjct: 225 GREVERRVVSERMDISVFLGSALVNMYARCGVVDKARRWFDALQERNVVTWTSMIAGYGM 284

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           HG G EA++LF  M   G  PNHVTF+AVLSAC+ +GL   G + F  M R + + PR  
Sbjct: 285 HGHGREAIKLFHLMRCEGPPPNHVTFVAVLSACAHAGLVMEGRDAFACMKRVYGLVPRVE 344

Query: 471 HYACMIELLGREGLLDEAFALIRG-APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
           HY  M+++ GR GLLDEA   I    P +    +W A+L AC+++ N  LG   AE+L  
Sbjct: 345 HYCSMVDMFGRAGLLDEAMQFISDYMPGEPGPEVWTAVLGACKMHKNFNLGVEVAERLIA 404

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           +EPE  S +V+L NIY  SGK+    +V  T+ ++ L+     S IE+    H+F  G++
Sbjct: 405 LEPENPSYHVLLSNIYALSGKMHHVEKVRNTMIKRRLKKQIGFSLIELGGTSHLFRMGEK 464

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLS-YHSEKLAVAFGL-IN 647
           SH QT EIY  ++ ++  I+  GY+PE +++L +++E+E+     YHSEKLAVA+GL ++
Sbjct: 465 SHPQTTEIYHYLEELIHRITAAGYMPETESVLHELEEEEREGALRYHSEKLAVAYGLMMS 524

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
               TP++++++ RIC DCH AIK ++ V  REIVVRD  RFHHFKDG CSC +YW
Sbjct: 525 VGSTTPIRVIKNLRICGDCHLAIKFMSAVENREIVVRDKHRFHHFKDGKCSCLEYW 580



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 159/315 (50%), Gaps = 5/315 (1%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189
           S T+ A+  AC  L ++R    + ++ +  GF  D ++   +++++ +CG +  AR+LFD
Sbjct: 105 SFTFTAVAKACADLSALRTGAAIHAHSILLGFGSDRFVLTALVVLYSKCGQLGVARKLFD 164

Query: 190 EMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249
            + +R++V+ N +I+G   +G       ++ ++    +   S TF   + A A    + +
Sbjct: 165 AIRDRSVVAWNAMISGYEQNGLAERGIGVYKEMQAAKAVPDSMTFVATLSACAQAGALDL 224

Query: 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309
           G+++    +      +VF+  AL++MY++CG ++ A+  FD + E+  V W ++IAGY +
Sbjct: 225 GREVERRVVSERMDISVFLGSALVNMYARCGVVDKARRWFDALQERNVVTWTSMIAGYGM 284

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIV 368
           HG+  EA+ L++ MR  G   +H TF  ++  C     +   + A A + R +G    + 
Sbjct: 285 HGHGREAIKLFHLMRCEGPPPNHVTFVAVLSACAHAGLVMEGRDAFACMKRVYGLVPRVE 344

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVIS--WNALIAGYGNHGRGEEAVELFEQMLL 426
              ++VD + + G +++A       +        W A++     H      VE+ E+++ 
Sbjct: 345 HYCSMVDMFGRAGLLDEAMQFISDYMPGEPGPEVWTAVLGACKMHKNFNLGVEVAERLI- 403

Query: 427 NGMRPNHVTFLAVLS 441
             + P + ++  +LS
Sbjct: 404 -ALEPENPSYHVLLS 417


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 207/573 (36%), Positives = 315/573 (54%), Gaps = 40/573 (6%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY  L  AC    +  E  +V ++++  G   D+++R+  + M+   G +  ARR+  E 
Sbjct: 132 TYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGED 191

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
              +++  N +I G +  G+   A  LF  +  E  + GS                    
Sbjct: 192 GNSDVICFNAMIDGYLKCGEVEAAKELFWSM--EDKNVGSW------------------- 230

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
                        NV VS       +KCG IE+A+ +F+EM EK  + W+ +I GY   G
Sbjct: 231 -------------NVMVSGM-----AKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGG 272

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
           Y +EAL+++  M+   ++   F  S ++  C  L +L+  +  HA +  +    D V  +
Sbjct: 273 YYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGT 332

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           ALVD Y+K GR++ A  VF+KM  K V +WNA+I G G HGR E+A+ELF +M     RP
Sbjct: 333 ALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRP 392

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491
           N +T L VLSAC+ SG+ + G  IF SM   + I+P   HY C+++LLGR GLL EA  +
Sbjct: 393 NGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEV 452

Query: 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551
           +   P + +  +W ALL ACR +G++ELG+   + L  +EP+    Y +L NIY  +G+ 
Sbjct: 453 MYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRW 512

Query: 552 KEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH 611
            + A V + ++ +G++     S I+     H F  GD SH Q K IY  +  M+  +   
Sbjct: 513 DDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKME 572

Query: 612 GYVPEEKTLLPDV-DEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           G+ P    +L D+ +E+++  L YHSEKLA+AFGLINT   T + +V++ R+C DCH+A 
Sbjct: 573 GFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAF 632

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           KLI+ V  REI+VRD +R+HHFK G CSC D+W
Sbjct: 633 KLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 152/324 (46%), Gaps = 23/324 (7%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKC--GSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           KQ+H+ AL+ G   + +VS  L+  Y+     ++  A  VF+ +       +N II G  
Sbjct: 47  KQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCL 106

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
            +    +A+  YY+M  +  + + FT+  + + CT   + E   Q HA +++ G   D+ 
Sbjct: 107 QNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVH 166

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
             SA +  Y  +G +E AR +  +    +VI +NA+I GY   G  E A ELF  M    
Sbjct: 167 IRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSM---- 222

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
              N  ++  ++S  ++ G+ E   E+F  M   ++I      ++ MI+   + G   EA
Sbjct: 223 EDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEIS-----WSAMIDGYIKGGYYKEA 277

Query: 489 ---FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY-----VV 540
              F +++    +  K + +++L AC   G L+ G++    ++       +++       
Sbjct: 278 LEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRW----IHAYVNNNSNSFDAVLGTA 333

Query: 541 LLNIYNSSGKLKEAAEVIRTLRRK 564
           L+++Y   G+L  A +V   + +K
Sbjct: 334 LVDMYAKCGRLDMAWDVFEKMEKK 357



 Score = 47.0 bits (110), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 41/220 (18%), Positives = 103/220 (46%), Gaps = 7/220 (3%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTY--DALISACIGLRSIREVKRVFSYM 156
           + I+  +    Y+EALE+F +++ E   ++    +   ++++AC  L ++ + + + +Y+
Sbjct: 263 AMIDGYIKGGYYKEALEVFNVMQRE---EIRPRKFVLSSVLAACANLGALDQGRWIHAYV 319

Query: 157 LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF 216
            +     D  +   ++ M+ +CG +  A  +F++M ++ + + N +I G+   G   +A 
Sbjct: 320 NNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAI 379

Query: 217 LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM-GFGDNVFVSCALIDM 275
            LF  + ++       T   ++ A A   ++  G ++ +   ++ G    +     ++D+
Sbjct: 380 ELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDL 439

Query: 276 YSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSE 314
             + G + +A+ V   M  E +   W  ++     HG  E
Sbjct: 440 LGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVE 479


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 206/615 (33%), Positives = 327/615 (53%), Gaps = 38/615 (6%)

Query: 123 EGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182
           + G   G+ T D   S      + R    + + ++  G + D  +  R+   +   G + 
Sbjct: 14  DSGGHHGALTADRAASLLAACSTARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLD 73

Query: 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242
            +  L     +   +     I      G +L    L  D+  E     + T +  + A  
Sbjct: 74  HSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACR 133

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMY-------------------------- 276
           GL   S+G+ LH+ A K+    + +V+ AL+ MY                          
Sbjct: 134 GL---SLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTA 190

Query: 277 -----SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331
                +  G+++DA+ +FD +  K  + WN +I GY  HG   EAL L+  M  S  + D
Sbjct: 191 MLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPD 250

Query: 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHG--FGLDIVANSALVDFYSKWGRIEDARHV 389
             T  +++    +L ++E  K  H+  V++     L++   +ALVD Y K G +EDA  V
Sbjct: 251 EVTVVLVLSAVAQLGTVESGKWLHS-YVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAV 309

Query: 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449
           F  +  K+++ WNA+I GY  HG   +A+E+F Q+   G+ P  +TF+ +L+ACS SGL 
Sbjct: 310 FHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLV 369

Query: 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509
           E G   FQSM  ++ I P+  HY CM++LLGR GL++EAF L++         MW +LL 
Sbjct: 370 EEGRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLA 429

Query: 510 ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRML 569
           ACR++ N+ LG+  A+ L          Y++L NIY + GK +E A V   ++  G++  
Sbjct: 430 ACRLHKNMALGQRIADFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKE 489

Query: 570 PACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QE 628
           P CS IE+ ++ + F++GD SH  T EIY  +D+M   + +HG+VP+ + +L D+DE  +
Sbjct: 490 PGCSAIEIDRKVYEFVAGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATK 549

Query: 629 QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
           ++ L+ HSEKLAVAFGLI++   + ++IV++ R C DCH  +KLI+ +T R+IV RD +R
Sbjct: 550 EKALAVHSEKLAVAFGLISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNR 609

Query: 689 FHHFKDGMCSCGDYW 703
           FHHF DG C+CGDYW
Sbjct: 610 FHHFVDGSCTCGDYW 624


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 194/508 (38%), Positives = 309/508 (60%), Gaps = 9/508 (1%)

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEE-FSDCGSRTFATMIRASAGLELISVGKQLHSCAL 258
           N +I G   S +  EA +L++ +  +  +   + TF  ++ + A L  +  G ++HS  +
Sbjct: 3   NTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHII 62

Query: 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALD 318
           K GF  ++FV  ALI +YS  G++  A+ +FDE   +  V +NT+I GYA     E AL 
Sbjct: 63  KHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALC 122

Query: 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG-FGLDIVANSALVDFY 377
           L+ EM++S    D  T   ++  C RL + +  K+ +   + +G F  + +  +A++D Y
Sbjct: 123 LFGEMQNS----DEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMY 178

Query: 378 SKWGRIEDARHVFDKM--LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
           +K G I+ A  +F ++    K    +N++IAG   HG GE A+ +F +++  G++P+ VT
Sbjct: 179 AKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVT 238

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
           F+ VL AC  SGL E G ++F+SM   + IKP+  HY CM++LLGR G L+EA+ L++  
Sbjct: 239 FVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKM 298

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           PF+    +W ALL+ACR +GN+++G+ A +KL  ME +  + YV+L NI   + + +EA 
Sbjct: 299 PFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEAR 358

Query: 556 EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
           +V + +   G+R  P  S+IE+    H F++ D+SH Q KEI   +  M + +   GYVP
Sbjct: 359 QVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVP 418

Query: 616 EEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
               ++ D+DE+E+  V+SYHSEKLA+AFGL+  S    ++IV++ RIC DCH A KL++
Sbjct: 419 NTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVS 478

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDY 702
            + GREI VRD  RFHHF++G CSC D+
Sbjct: 479 EIYGREITVRDTMRFHHFRNGSCSCMDF 506



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 156/307 (50%), Gaps = 9/307 (2%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           REA+ L+  +  +G     + T+  L+++C  L S+     V S+++  GFE DL++RN 
Sbjct: 16  REAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNA 75

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ ++   G +  AR LFDE   R+LVS N +I G  +      A  LF     E  +  
Sbjct: 76  LIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLF----GEMQNSD 131

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMG-FGDNVFVSCALIDMYSKCGSIEDAQGVF 289
             T   ++ A A L    +GK+L+   ++ G F  N  ++ A++DMY+KCGSI+ A  +F
Sbjct: 132 EVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIF 191

Query: 290 DEMSEKTTVG--WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347
             + +    G  +N++IAG A HG  E A+ ++ E+  +G+K D  TF  ++  C     
Sbjct: 192 RRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGL 251

Query: 348 LEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALI 405
           +E  K+    +   +G    +     +VD   ++G +E+A  +  KM    N + W AL+
Sbjct: 252 IEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALL 311

Query: 406 AGYGNHG 412
           +    HG
Sbjct: 312 SACRTHG 318



 Score = 42.4 bits (98), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 40/195 (20%)

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMR-PNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           WN +I GY       EA+ L+  M+  G+  PN+ TF  +L++C+R    E G E+   +
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 460 SR-----DHKIKPRAMH-YACMIELLGREGLLDEAF--------ALIRGAP--------- 496
            +     D  ++   +H Y+    L     L DE+          +I+G           
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 497 --FKTTKN----MWAALLTACRVNGNLELGKFAAEKLY------GMEPEKLSNYVVLLNI 544
             F   +N       A+L+AC   G  +LGK    +LY      G+  +       ++++
Sbjct: 122 CLFGEMQNSDEVTLVAVLSACARLGAFDLGK----RLYHQYIENGVFNQNTILTAAVMDM 177

Query: 545 YNSSGKLKEAAEVIR 559
           Y   G +  A E+ R
Sbjct: 178 YAKCGSIDSALEIFR 192


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 197/602 (32%), Positives = 341/602 (56%), Gaps = 3/602 (0%)

Query: 99   SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
            S I     N    EA+ELF  +  +G  ++ S+T  +++ AC         + V  Y + 
Sbjct: 481  SVISGCTSNGLNSEAIELFVRMWMQG-HELDSTTLLSVLPACARSHYWFVGRVVHGYSVK 539

Query: 159  TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            TG   +  + N +L M+  C       ++F  M ++N+VS   +I     +G + +   L
Sbjct: 540  TGLIGETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGL 599

Query: 219  FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
              ++  +          +++   AG E +  GK +H  A++ G    + V+ AL++MY  
Sbjct: 600  LQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVN 659

Query: 279  CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
            C ++E+A+ VFD ++ K  + WNT+I GY+ + ++ E+  L+ +M     K +  T + I
Sbjct: 660  CRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKPNTVTMTCI 718

Query: 339  IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
            +     ++SLE  ++ HA  +R GF  D   ++ALVD Y K G +  AR +FD++  KN+
Sbjct: 719  LPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNL 778

Query: 399  ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
            ISW  +IAGYG HG G++AV LFEQM  +G+ P+  +F A+L AC  SGL+  GW+ F +
Sbjct: 779  ISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNA 838

Query: 459  MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
            M +++KI+P+  HY C+++LL   G L EAF  I   P +   ++W +LL  CR++ +++
Sbjct: 839  MRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVK 898

Query: 519  LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
            L +  A++++ +EPE    YV+L NIY  + + +   ++   +  +GLR    CSWIEV+
Sbjct: 899  LAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWIEVR 958

Query: 579  KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEK-TLLPDVDEQEQRVLSYHSE 637
             + HVF++ +++H +   I   +D +   + + G+ P++K +L+   D      L  HS 
Sbjct: 959  GKVHVFIADNRNHPEWNRIAEFLDHVARRMREEGHDPKKKYSLMGANDAVHDEALCGHSS 1018

Query: 638  KLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMC 697
            KLAV FG+++  +  P+++ ++ ++C  CH A K I+ +  REI++RD+SRFHHF+ G C
Sbjct: 1019 KLAVTFGVLHLPEGRPIRVTKNSKVCSHCHEAAKFISKMCNREIILRDSSRFHHFEGGRC 1078

Query: 698  SC 699
            SC
Sbjct: 1079 SC 1080



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 153/559 (27%), Positives = 245/559 (43%), Gaps = 57/559 (10%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
           + E+L LFE +  E G          L+     L   R+      Y++  GF     + N
Sbjct: 391 FEESLLLFEQMH-ELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCN 449

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++  + +  M+ +A  +FD MP ++ +S N +I+G   +G   EA  LF+ +W +  + 
Sbjct: 450 ALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHEL 509

Query: 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
            S T  +++ A A      VG+ +H  ++K G      ++ AL+DMYS C        +F
Sbjct: 510 DSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIF 569

Query: 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
             M++K  V W  +I  Y   G  ++   L  EM   G+K D F  + ++       SL+
Sbjct: 570 RNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLK 629

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409
             K  H   +R+G    +   +AL++ Y     +E+AR VFD +  K++ISWN LI GY 
Sbjct: 630 QGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYS 689

Query: 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR-------- 461
            +    E+  LF  MLL   +PN VT   +L A +     ERG EI     R        
Sbjct: 690 RNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSY 748

Query: 462 ----------------------DHKIKPRAMHYACMIELLGREGLLDEAFAL---IRGAP 496
                                 D   K   + +  MI   G  G   +A AL   +RG+ 
Sbjct: 749 TSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSG 808

Query: 497 FKTTKNMWAALLTACRVNG-NLELGKF--AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553
            +     ++A+L AC  +G   E  KF  A  K Y +EP KL +Y  ++++ + +G LKE
Sbjct: 809 VEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEP-KLKHYTCIVDLLSHTGNLKE 867

Query: 554 AAEVIRTLRRKGLRMLPACS-WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMM-LEISKH 611
           A E I +     + + P  S W+ +       L G + H   K   +  DR+  LE    
Sbjct: 868 AFEFIES-----MPIEPDSSIWVSL-------LHGCRIHRDVKLAEKVADRVFKLEPENT 915

Query: 612 GYVPEEKTLLPDVDEQEQR 630
           GY      LL ++  + +R
Sbjct: 916 GYY----VLLANIYAEAER 930



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/468 (26%), Positives = 214/468 (45%), Gaps = 38/468 (8%)

Query: 70  PKPNKIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVG 129
           P   ++        S  +   +  S+ +  +I++L        AL L   L  +GG  VG
Sbjct: 39  PPAGQVIEAAAAAPSPRNPPSRVLSSDVNLRIQRLCQAGDLAAALRL---LGSDGG--VG 93

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLS-TGFEPDLYMRNRVLLMHVRCGMMIDARRLF 188
             +Y A++  C   RS+   +R  + + + TG      +  R++L +++CG +  AR +F
Sbjct: 94  VRSYCAVVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVF 153

Query: 189 DEMPER--NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG----SRTFATMIRASA 242
           DEMP R  ++     +++    +GD+ E   LF     +   CG    +   + +++  A
Sbjct: 154 DEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLF----RQMQCCGVSPDAHAVSCVLKCIA 209

Query: 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
            L  I+ G+ +H    K+G G+   V+ ALI +YS+CG +EDA  VFD M  +  + WN+
Sbjct: 210 SLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNS 269

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
            I+GY  +G+ + A+DL+ +M   G ++   T   ++  C  L      K  H   ++ G
Sbjct: 270 TISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSG 329

Query: 363 F---------GLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NVISWNALIAGYGNHG 412
                     G+D    S LV  Y K G +  AR VFD M  K NV  WN ++ GY    
Sbjct: 330 LLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAA 389

Query: 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLS-----ACSRSGLSERGWEIFQSMSRDHKIKP 467
             EE++ LFEQM   G+ P+      +L      +C+R GL   G+ +         +  
Sbjct: 390 EFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAV-- 447

Query: 468 RAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG 515
                  +I    +  ++D A  +    P + T + W ++++ C  NG
Sbjct: 448 ----CNALISFYAKSNMIDNAVLVFDRMPHQDTIS-WNSVISGCTSNG 490



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 222/514 (43%), Gaps = 50/514 (9%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           S I     N  +  A++LF  +  EG  ++ S T  +++ AC  L      K V  Y + 
Sbjct: 269 STISGYFSNGWHDRAVDLFSKMWSEG-TEISSVTVLSVLPACAELGFELVGKVVHGYSMK 327

Query: 159 TGFEPDL---------YMRNRVLLMHVRCGMMIDARRLFDEMPER-NLVSCNMIIAGMID 208
           +G   DL          + ++++ M+V+CG M  ARR+FD MP + N+   N+I+ G   
Sbjct: 328 SGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAK 387

Query: 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFV 268
           + ++ E+ LLF  + E          + +++    L     G   H   +K+GFG    V
Sbjct: 388 AAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAV 447

Query: 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328
             ALI  Y+K   I++A  VFD M  + T+ WN++I+G   +G + EA++L+  M   G 
Sbjct: 448 CNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGH 507

Query: 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
           ++D  T   ++  C R       +  H   V+ G   +    +AL+D YS          
Sbjct: 508 ELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQ 567

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS---- 444
           +F  M  KNV+SW A+I  Y   G  ++   L ++M+L+G++P+     +VL   +    
Sbjct: 568 IFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDES 627

Query: 445 -RSGLSERGWEIFQSMSR-------------------------DHKIKPRAMHYACMIEL 478
            + G S  G+ I   M +                         DH      + +  +I  
Sbjct: 628 LKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGG 687

Query: 479 LGREGLLDEAFALIRGA--PFKTTKNMWAALLTACRVNGNLELGK----FAAEKLYGMEP 532
             R    +E+F+L       FK        +L A     +LE G+    +A  + + +E 
Sbjct: 688 YSRNNFANESFSLFSDMLLQFKPNTVTMTCILPAVASISSLERGREIHAYALRRGF-LED 746

Query: 533 EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
              SN   L+++Y   G L  A  +   L +K L
Sbjct: 747 SYTSN--ALVDMYVKCGALLVARVLFDRLTKKNL 778


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 192/536 (35%), Positives = 307/536 (57%), Gaps = 32/536 (5%)

Query: 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK 259
           N +I+G   SG +  +   F+D+    +   + T+ +++ A    + + +G Q+H   L+
Sbjct: 130 NALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRVLE 189

Query: 260 MGFGDNVFVSCALIDMYSKCG-------------------------------SIEDAQGV 288
            G   +  V  AL+DMY++CG                                ++ A+ +
Sbjct: 190 SGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDL 249

Query: 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348
           FD M E+ T+ W  +I GY   G   +AL+ +  M+   V+ D FT   ++  C +L +L
Sbjct: 250 FDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGAL 309

Query: 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY 408
           E  + A   + R G  +D+   +AL+D YSK G IE A  VF  M  ++  +W A+I G 
Sbjct: 310 ETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGL 369

Query: 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468
             +GRGEEA+++F +ML     P+ VTF+ VL+AC+ +GL ++G E F SM+  + I P 
Sbjct: 370 AVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPT 429

Query: 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528
            +HY C+I++LGR G L EA   I   P K    +W  LL +CRV GN E+G+ AAE+L 
Sbjct: 430 VVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLL 489

Query: 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGD 588
            ++P+  + Y++L N+Y  S + K+   + + +  KG++  P CS IE+    H F++ D
Sbjct: 490 ELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAAD 549

Query: 589 QSHVQTKEIYRKVDRMMLEISKHGYVPE-EKTLLPDVDEQEQRVLSYHSEKLAVAFGLIN 647
           +SH   KEIY K++ ++ ++   GYVP+  + L+   +E++Q+VL +HSEKLAV F L+ 
Sbjct: 550 RSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFALLT 609

Query: 648 TSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +     ++IV++ R+C DCHNAIKLI+ + GRE++VRD +RFHHF+ G CSC DYW
Sbjct: 610 SESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665



 Score =  125 bits (314), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 149/328 (45%), Gaps = 44/328 (13%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMM---------- 181
           TY +++SAC   + +    +V   +L +G  PD  + N ++ M+  CG M          
Sbjct: 163 TYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGM 222

Query: 182 --------------------ID-ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
                               +D AR LFD MPER+ ++   +I G +  G + +A    L
Sbjct: 223 QMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDA----L 278

Query: 221 DLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276
           + +     C  R    T  +++ A A L  +  G+       ++G   +VFV  ALIDMY
Sbjct: 279 ETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMY 338

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
           SKCGSIE A  VF +M  +    W  II G A++G  EEA+D++Y M  +    D  TF 
Sbjct: 339 SKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFV 398

Query: 337 MIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
            ++  CT    ++  ++    +   +     +V    L+D   + G++++A    DKM  
Sbjct: 399 GVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPM 458

Query: 396 K-NVISWNALIAG---YGNHGRGEEAVE 419
           K N   W  L+A    YGN   GE A E
Sbjct: 459 KPNSTIWGTLLASCRVYGNSEIGELAAE 486



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 104/236 (44%), Gaps = 3/236 (1%)

Query: 81  KESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISAC 140
           +   L D   ++ +    + I+  V   R+R+ALE F  ++          T  ++++AC
Sbjct: 245 RARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQI-CKVRADEFTMVSVVTAC 303

Query: 141 IGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCN 200
             L ++   +    YM   G + D+++ N ++ M+ +CG +  A  +F +M  R+  +  
Sbjct: 304 AQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWT 363

Query: 201 MIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH-SCALK 259
            II G+  +G   EA  +F  +          TF  ++ A     L+  G++   S    
Sbjct: 364 AIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEA 423

Query: 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYALHGYSE 314
                 V     LID+  + G +++A    D+M  K  +  W T++A   ++G SE
Sbjct: 424 YNISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSE 479



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 132/292 (45%), Gaps = 20/292 (6%)

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           ++  A+ + D +  +     ++ ++G   HG +EEA+  Y  M   G + D +TF  +++
Sbjct: 4   ALSRARSLLDGIPHRRGRAASSSVSG---HG-AEEAVAGYVRMLAGGARPDAYTFPSLLK 59

Query: 341 ICTRLASLEHAKQA-----HAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395
                     A  +     HA +V+ G   +  A S+L+  Y+  G    AR V +    
Sbjct: 60  AAAAARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACL 119

Query: 396 KN----VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451
                  + WNALI+G+   GR E +   F  M+        VT+++VLSAC +      
Sbjct: 120 ATGGGAPVMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLL 179

Query: 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTAC 511
           G ++ + +     +  + +  A ++++    G +D A+ L  G   ++  + W ++++  
Sbjct: 180 GMQVHKRVLESGVLPDQRVENA-LVDMYAECGDMDAAWVLFEGMQMRSMAS-WTSVISGL 237

Query: 512 RVNGNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLR 562
             +G ++     A  L+   PE+ +  +  +++ Y   G+ ++A E  R ++
Sbjct: 238 VRSGQVD----RARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQ 285


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 227/633 (35%), Positives = 347/633 (54%), Gaps = 62/633 (9%)

Query: 129 GSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM----MIDA 184
           G+S   +L       R+IR++ ++ +  + +G   D      +L       +    +  A
Sbjct: 12  GNSPASSLFPQINTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCATSDLHHRDLDYA 71

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGD--YLEAFLLFLDLW-EEFSDCGSRTFATMIRAS 241
            ++F++MP+RN  S N II G  +S +   L A  LF ++  +EF +    TF ++++A 
Sbjct: 72  HKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSVLKAC 131

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED----------------- 284
           A    I  GKQ+H  ALK GFG + FV   L+ MY  CG ++D                 
Sbjct: 132 AKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIEREMVMM 191

Query: 285 ----------------------------AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
                                       A+ +FD+M +++ V WNT+I+GY+ +G+ ++A
Sbjct: 192 IDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDA 251

Query: 317 LDLYYEMRDS-GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
           ++++ EM+    ++ ++ T   ++   +RL SLE  +  H      G  +D V  SAL+D
Sbjct: 252 VEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALID 311

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            YSK G IE A  VF+++  +NVI+W+A+I G+  HG+  +A++ F +M   G+RP+ V 
Sbjct: 312 MYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVA 371

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
           ++ +L+ACS +GL E G   F  M     ++PR  HY CM++LLGR GLLDEA   I   
Sbjct: 372 YINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNM 431

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           P K    +W ALL ACR++ N+E+GK  A  L  M P     YV L N+Y S G   E +
Sbjct: 432 PIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVS 491

Query: 556 EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKH---- 611
           E+   ++   +R  P CSWI++    H FL  D SH + KEI    + M++EIS      
Sbjct: 492 EMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEI----NSMLVEISDKLRLA 547

Query: 612 GYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAI 670
           GY P    +L +++E++ +  L YHSEK+A AFGLI+TS   P++IV++ RIC DCH++I
Sbjct: 548 GYRPITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDCHSSI 607

Query: 671 KLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           KLI+ V  R+I VRD  RFHHF+DG CSC DYW
Sbjct: 608 KLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  366 bits (939), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 203/620 (32%), Positives = 330/620 (53%), Gaps = 48/620 (7%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T  +++  C    +I+  K + +++L  G   D+ + N +L ++++C     A   F+ M
Sbjct: 136 TLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELM 195

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDL-------WEEFSD----CGSR-------- 232
            E+++VS N++I   +  GD  ++  +F +        W    D    CG          
Sbjct: 196 IEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLY 255

Query: 233 ------------TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
                       TF+  +   + L L+ VG+QLH   L  G   + ++  +L++MY KCG
Sbjct: 256 CMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCG 315

Query: 281 SIEDAQGVFDEMS----------------EKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
            ++ A  +  ++                 +   V W+++++GY  +G  E+ +  +  M 
Sbjct: 316 RMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMV 375

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
              + +D  T + II  C     LE  KQ HA + + G  +D    S+L+D YSK G ++
Sbjct: 376 CELIVVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLD 435

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           DA  +F+++   NV+ W ++I+G   HG+G+EA+ LFE ML  G+ PN VTF+ VL+ACS
Sbjct: 436 DALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNACS 495

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
             GL E G   F+ M   + I P   HY  M+ L GR G L EA   I         ++W
Sbjct: 496 HVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTSVW 555

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
            + L++CR++ N  +GK  +E L    P     Y++L N+ +S+ +  EAA V   + ++
Sbjct: 556 RSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSSNHQWDEAAIVRSLMYQR 615

Query: 565 GLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV 624
           G++  P  SW+++K Q H F  GD+SH Q KEIY  +D ++  + + GY  + K ++ DV
Sbjct: 616 GVKKQPGQSWVQLKDQIHSFTVGDRSHPQDKEIYSYLDSLIGRLKEIGYSLDAKLVMQDV 675

Query: 625 DEQEQRVL-SYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVV 683
           +E++  VL S+HSEKLA+ F +INTS  TP++I+++ RIC DCHN  K  + +  REI+V
Sbjct: 676 EEEQGEVLISHHSEKLALVFSIINTSPRTPIRIMKNLRICNDCHNFFKYASQLLEREIIV 735

Query: 684 RDASRFHHFKDGMCSCGDYW 703
           RD  RFHHFK   CSCG+YW
Sbjct: 736 RDTHRFHHFKQSSCSCGEYW 755



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/449 (23%), Positives = 207/449 (46%), Gaps = 63/449 (14%)

Query: 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLE-AFLLFLDLWEEFS 227
           N +L ++V+   +  A +LFDE+  +N  +  ++I+G   +    E  F LF ++  + +
Sbjct: 71  NYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQADGA 130

Query: 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287
                T +++++  +    I  GK +H+  L+ G G +V +  +++D+Y KC   E A+ 
Sbjct: 131 CPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAES 190

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY--------------------------- 320
            F+ M EK  V WN +I  Y   G  E++L+++                           
Sbjct: 191 FFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLA 250

Query: 321 ----YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
               Y M   G +    TFS+ + + + L+ +E  +Q H  ++  G   D    S+LV+ 
Sbjct: 251 LEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEM 310

Query: 377 YSKWGRIEDARHVFDK------------MLCKN----VISWNALIAGYGNHGRGEEAVEL 420
           Y K GR++ A  +               + CK     ++SW+++++GY  +G+ E+ ++ 
Sbjct: 311 YGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKT 370

Query: 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY--ACMIEL 478
           F  M+   +  +  T   ++SAC+ +G+ E G +I   +    KI  R   Y  + +I++
Sbjct: 371 FRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAYI---QKIGLRIDAYVGSSLIDM 427

Query: 479 LGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME-----PE 533
             + G LD+A  +      +    +W ++++ C ++G    GK A     GM      P 
Sbjct: 428 YSKSGSLDDALMIFEQIK-EPNVVLWTSMISGCALHGQ---GKEAISLFEGMLNLGIIPN 483

Query: 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           +++ +V +LN  +  G ++E     R ++
Sbjct: 484 EVT-FVGVLNACSHVGLIEEGCRYFRMMK 511



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/322 (24%), Positives = 143/322 (44%), Gaps = 58/322 (18%)

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA-L 309
           + LH    K G    +  +  L+ +Y K  +++ A  +FDE++ K T  W  +I+G+A  
Sbjct: 52  RALHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARA 111

Query: 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369
            G SE    L+ EM+  G   + +T S +++ C+R  +++  K  HA ++R+G G D+V 
Sbjct: 112 AGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVL 171

Query: 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQ------ 423
            ++++D Y K    E A   F+ M+ K+V+SWN +I  Y   G  E+++E+F        
Sbjct: 172 ENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDV 231

Query: 424 -------------------------MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ- 457
                                    M+ +G   + VTF   L   S   L E G ++   
Sbjct: 232 VSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGR 291

Query: 458 ----SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF---------------K 498
                ++ D  I+      + ++E+ G+ G +D+A  +++  P                K
Sbjct: 292 VLTFGLNSDGYIR------SSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPK 345

Query: 499 TTKNMWAALLTACRVNGNLELG 520
                W+++++    NG  E G
Sbjct: 346 ARMVSWSSMVSGYVWNGKYEDG 367



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 41/198 (20%)

Query: 368 VANSA--LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN-HGRGEEAVELFEQM 424
           + NSA  L+  Y K   ++ A  +FD++  KN  +W  LI+G+    G  E    LF +M
Sbjct: 66  ILNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREM 125

Query: 425 LLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR--------------DHKIKPRAM 470
             +G  PN  T  +VL  CSR    + G  I   + R              D  +K +  
Sbjct: 126 QADGACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEF 185

Query: 471 HYA-----CMIE--------LLG---REGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
            YA      MIE        ++G   REG ++++  + R  P K   + W  +     ++
Sbjct: 186 EYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVS-WNTI-----ID 239

Query: 515 GNLELG--KFAAEKLYGM 530
           G ++ G  + A E+LY M
Sbjct: 240 GLIQCGYERLALEQLYCM 257


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 206/593 (34%), Positives = 328/593 (55%), Gaps = 21/593 (3%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD-E 190
           T  A + AC     +     +    + TG+E    + + ++L++ + G + DARR+FD  
Sbjct: 321 TLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCA 380

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW------EEFSDCGSRTFATMIRASAGL 244
              R L + N +I+G   +G   +A L+F ++       E+       TFA++++A  GL
Sbjct: 381 GLGRGLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGL 440

Query: 245 ELISVGKQLHSCALKMGF--GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNT 302
                G Q+H+     GF    N  ++ AL+DMY KCG +  A  VF+ +  K  + W T
Sbjct: 441 GAPREGAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTT 500

Query: 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362
           ++ G+A  G   EAL+L+     SG + D    S I+ +    A +E  +Q H   V+  
Sbjct: 501 VVVGHAQEGQVMEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSP 560

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
            G D+ A +++VD Y K G  ++A  +F ++  +NV+SW  +I G G HG G EAV +FE
Sbjct: 561 AGTDVSAGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFE 620

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482
           +M   G+ P+ VT+LA+LSACS +GL +     F  + RD  ++P+A HYACM++LLGR 
Sbjct: 621 EMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRA 680

Query: 483 GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542
           G L EA  LIR  P + T  +W  LL+ACRV+ ++ +G+ A + L  ++ +   NYV L 
Sbjct: 681 GELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPVNYVTLS 740

Query: 543 NIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSG--DQSHVQTKEIYRK 600
           N++  +G  +E  +V   +RR+GL+    CSW+E+ K+ H F  G  +++H Q  +I R 
Sbjct: 741 NVFAEAGAWRECHKVRDAMRRRGLKKQGGCSWVEIGKEVHFFYGGGDEEAHPQAGDIRRV 800

Query: 601 VDRMMLEISKH-GYVPEE-KTLLPDVDEQEQ-RVLSYHSEKLAVAFGLI-NTSDWT---- 652
           +  +   + +  GY  ++ +  L DVDE+ +   L  HSE+LAV   L+ N  D      
Sbjct: 801 LRDVETRVREQLGYCADDVQFALHDVDEESRAESLRAHSERLAVGLWLLRNGVDGGGGGH 860

Query: 653 --PLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
             P+++ ++ R+C DCH   K ++ V  R +VVRDA+RFH F+ G CSC DYW
Sbjct: 861 RQPIRVYKNLRVCGDCHEFFKGLSAVVRRALVVRDANRFHRFEHGTCSCKDYW 913



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 115/463 (24%), Positives = 213/463 (46%), Gaps = 47/463 (10%)

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           S+R   ++   +   GF  D  + N ++ M+ +CG +  A  +F  M +RN+VS   ++ 
Sbjct: 232 SLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMRDRNVVSWTALMV 291

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQLHSCALKMGFG 263
           G +  GD      L  ++        +  T +  ++A    E +  G  +H   ++ G+ 
Sbjct: 292 GFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGVGIHGLCVRTGYE 351

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEALDLYYE 322
           ++  V+ +L+ +YSK G I DA+ VFD     +    WN +I+GYA  G+  +AL ++ E
Sbjct: 352 EHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAGHGRDALLVFRE 411

Query: 323 M------RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL--DIVANSALV 374
           M       +   + D FTF+ +++ C  L +     Q HA +   GF    + +   ALV
Sbjct: 412 MRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFSTASNAILAGALV 471

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
           D Y K GR+  A  VF+++  KN I W  ++ G+   G+  EA+ELF +   +G R +  
Sbjct: 472 DMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARADAH 531

Query: 435 TFLAVLSACSRSGLSERGWEIF-------------------------------QSMSRDH 463
              +++   +   L E+G ++                                + M R+ 
Sbjct: 532 VLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFREI 591

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFAL---IRGAPFKTTKNMWAALLTACRVNGNLELG 520
             +   + +  MI  LG+ GL  EA A+   +R    +  +  + ALL+AC   G ++  
Sbjct: 592 PAR-NVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLSACSHAGLVDEC 650

Query: 521 K--FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           +  F+  +       K  +Y  ++++   +G+L+EA ++IRT+
Sbjct: 651 RRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTM 693



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/237 (33%), Positives = 122/237 (51%), Gaps = 8/237 (3%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           +  A ++RASA    +  G QLH    K+GFG +  +   LIDMY+KCG ++ A  VF  
Sbjct: 218 KMIADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGG 277

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR-DSGVKMDHFTFSMIIRICTRLASLEH 350
           M ++  V W  ++ G+  HG +   L L  EMR  S    + +T S  ++ C     +  
Sbjct: 278 MRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGA 337

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFD-KMLCKNVISWNALIAGYG 409
               H   VR G+    V  S+LV  YSK GRI DAR VFD   L + + +WNA+I+GY 
Sbjct: 338 GVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYA 397

Query: 410 NHGRGEEAVELFEQMLL------NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           + G G +A+ +F +M        +  +P+  TF ++L AC   G    G ++  +M+
Sbjct: 398 HAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMA 454



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 107/237 (45%), Gaps = 15/237 (6%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EALELF    +  G    +    +++        + + ++V  Y + +    D+   N +
Sbjct: 513 EALELFRRF-WRSGARADAHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSI 571

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+++CG+  +A R+F E+P RN+VS   +I G+   G   EA  +F ++     +   
Sbjct: 572 VDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDE 631

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCA-----LIDMYSKCGSIEDAQ 286
            T+  ++ A +   L+   ++  SC  +    D      A     ++D+  + G + +A+
Sbjct: 632 VTYLALLSACSHAGLVDECRRYFSCIRR----DRTVRPKAEHYACMVDLLGRAGELREAR 687

Query: 287 GVFDEMSEKTTVG-WNTIIAGYALH---GYSEEALDLYYEMRDSGVKMDHFTFSMII 339
            +   M  + TVG W T+++   +H       EA D+   + D    +++ T S + 
Sbjct: 688 DLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAI-DGDNPVNYVTLSNVF 743


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 197/506 (38%), Positives = 292/506 (57%), Gaps = 35/506 (6%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD-- 290
           TF  + +A      +  G+Q+   A+K+G   N+FV+ A+I MY+  G +++A+ VFD  
Sbjct: 34  TFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWS 93

Query: 291 -----------------------------EMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321
                                        EMSE+  V W TIIAGY   G  +EALDL++
Sbjct: 94  LDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFH 153

Query: 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG 381
           EM  +G   + FT +  +  C  L +L+  +  H  + +    ++    ++L+D Y+K G
Sbjct: 154 EMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCG 213

Query: 382 RIEDARHVF--DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
            I+ A  VF  +  L   V  WNA+I GY  HG+ +EA++LFEQM +  + PN VTF+A+
Sbjct: 214 EIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVAL 273

Query: 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499
           L+ACS   L E G   F+SM+  + I+P   HY CM++LLGR GLL EA   +   P   
Sbjct: 274 LNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAP 333

Query: 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559
              +W ALL ACR++ ++E G+   + +  ++ + +  +V+L N+Y++SG+  EA  V +
Sbjct: 334 DATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQ 393

Query: 560 TLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKT 619
            +   G +  P CS IE+    H FL GD+SH QTK++Y  +D M  ++   GYVPE   
Sbjct: 394 KIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGE 453

Query: 620 LLPDVDEQEQR--VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVT 677
           +L D+D++E +   LS HSEKLA+AFGLINT   T ++IV++ R+C DCH A K I+ V 
Sbjct: 454 VLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVY 513

Query: 678 GREIVVRDASRFHHFKDGMCSCGDYW 703
            REI+VRD  R+HHFKDG CSC DYW
Sbjct: 514 KREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 135/266 (50%), Gaps = 8/266 (3%)

Query: 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAG 205
           + E +RVF + L    + DLY  N ++  +V  G +  A+ +FDEM ER++VS   IIAG
Sbjct: 83  VDEARRVFDWSL----DQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAG 138

Query: 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN 265
            +  G + EA  LF ++ +        T A+ + A A L  +  G+ +H    K     N
Sbjct: 139 YVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMN 198

Query: 266 VFVSCALIDMYSKCGSIEDAQGVF-DEMSEKTTV-GWNTIIAGYALHGYSEEALDLYYEM 323
             +  +L+DMY+KCG I+ A  VF DE   K  V  WN +I GYA+HG S+EA+DL+ +M
Sbjct: 199 ERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQM 258

Query: 324 RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV-RHGFGLDIVANSALVDFYSKWGR 382
           +   V  +  TF  ++  C+    +E  +     +   +G   +I     +VD   + G 
Sbjct: 259 KVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGL 318

Query: 383 IEDARH-VFDKMLCKNVISWNALIAG 407
           +++A   VF+  +  +   W AL+  
Sbjct: 319 LKEAEETVFNMPMAPDATIWGALLGA 344



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/317 (22%), Positives = 130/317 (41%), Gaps = 73/317 (23%)

Query: 313 SEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
           S  ++ ++  M R SG   + +TF  + + C     +   +Q     ++ G   ++   +
Sbjct: 12  SHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTN 71

Query: 372 ALVDFYSKWGRIEDARHV-------------------------------FDKMLCKNVIS 400
           A++  Y+ WG +++AR V                               FD+M  ++V+S
Sbjct: 72  AMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVS 131

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           W  +IAGY   G  +EA++LF +ML  G  PN  T  + L+AC+     ++G  I   + 
Sbjct: 132 WTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQGRWIHVYID 191

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEA-------------------------------- 488
           +  +IK      A ++++  + G +D A                                
Sbjct: 192 KS-EIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKE 250

Query: 489 ----FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVL 541
               F  ++       K  + ALL AC     +E G+   + +   YG+EPE + +Y  +
Sbjct: 251 AIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPE-IEHYGCM 309

Query: 542 LNIYNSSGKLKEAAEVI 558
           +++   SG LKEA E +
Sbjct: 310 VDLLGRSGLLKEAEETV 326


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 214/625 (34%), Positives = 339/625 (54%), Gaps = 56/625 (8%)

Query: 130 SSTYDALISACIGLRSIREVKRVFSYMLSTGFE--PDLYMRNRVLLMHVRCGMMIDARRL 187
           S  Y  L+ +C    S+   +R+ + +++TG    P+ ++ N +L  +  CG    AR++
Sbjct: 13  SRHYRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKV 72

Query: 188 FDEMP--ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRAS 241
           FDE+P   ++ V    ++   +      EA L+F+    E   CG +    T   +    
Sbjct: 73  FDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFV----EMRRCGVKPDEVTLVCLFGGC 128

Query: 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG--------------------- 280
           A L  + VG Q H C +KMG G       A++DMY+K G                     
Sbjct: 129 ARLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWT 188

Query: 281 ----------SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM-RDSGVK 329
                      + + + VFDEM E+  V W  +IAGY   G ++E+  L  EM  D  ++
Sbjct: 189 VILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEME 248

Query: 330 MDHFTFSMIIRICTRLASLEHAKQAHA-GLVRHGFGLDIVANSALVDFYSKWGRIEDARH 388
           +++ T   I+  C++   L   +  HA  L      L+I+  +A+VD Y+K GRI  A  
Sbjct: 249 LNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFK 308

Query: 389 VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448
            F KM  +NV+SWNA+++G   HG G  A+++F QM     +P+ VTF +VLSACS SGL
Sbjct: 309 FFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGL 367

Query: 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
            ++G   F ++   + I P+  HYACM++LLGR G L+EA  L+R  P +  + +  +LL
Sbjct: 368 VDQGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLL 427

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
            +C ++G L+LG+   ++L  ++P+    +++L N+Y  +GK   A  + + L+++G++ 
Sbjct: 428 GSCSIHGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKK 487

Query: 569 LPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEE--------KTL 620
           +P  S I V  Q H F +GD+SH +T+E+Y  +D M+  +   GY P           +L
Sbjct: 488 VPGMSSIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSL 547

Query: 621 LPDVDEQEQR--VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTG 678
             D+ EQE++   L  HSEKLA+ FGLI+T    PL I ++ RIC DCH+AIK+++ +  
Sbjct: 548 EDDLVEQEEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYN 607

Query: 679 REIVVRDASRFHHFKDGMCSCGDYW 703
           REIV+RD +RFH FK+G CSC DYW
Sbjct: 608 REIVIRDRNRFHCFKEGSCSCCDYW 632



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 46/207 (22%), Positives = 99/207 (47%), Gaps = 10/207 (4%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG-FEPDLYMRN 169
           +E+  L   + F+   ++   T  ++++AC     +   + V +Y L T   E ++ +  
Sbjct: 232 QESFALVREMIFDLEMELNYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGT 291

Query: 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
            ++ M+ +CG +  A + F +MP+RN+VS N +++G+   G    A  +F  +++E +  
Sbjct: 292 AMVDMYAKCGRIHIAFKFFKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKE-AKP 350

Query: 230 GSRTFATMIRASAGLELISVG----KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285
              TF +++ A +   L+  G      L S     G    V     ++D+  + G +E+A
Sbjct: 351 DDVTFTSVLSACSHSGLVDQGCFYFGNLESV---YGITPKVEHYACMVDLLGRAGRLEEA 407

Query: 286 QGVFDEMSEKTT-VGWNTIIAGYALHG 311
           + +  EM  +   V   +++   ++HG
Sbjct: 408 EILVREMPIRPNEVVLGSLLGSCSIHG 434


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  365 bits (938), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 198/551 (35%), Positives = 318/551 (57%), Gaps = 43/551 (7%)

Query: 157 LSTGFEP-DLYMRNRVLLMHVR--CGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
           L +GF   DL++R  ++ M+ +   G +  AR  FDE P R++  CN+++A  +  G+  
Sbjct: 74  LRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLAAYVARGEVA 133

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA  +F  +                   +G +L+S    +H  A++              
Sbjct: 134 EARKVFDGM-------------------SGRDLVSWNTMIHGYAVR-------------- 160

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
                 G +  A+ +FD   ++    W+++I+ YA    S+EAL+L+ EMR +GV  D  
Sbjct: 161 ------GDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPDCI 214

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
           +   ++  C+ + +L    + H  +  +   +D+   +ALVD Y+K G IE++  VF  M
Sbjct: 215 SMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAM 274

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             K+V++W+++I G  NHG G +A+ LF +M+  G++PN +TF+ VL AC+  GL   G 
Sbjct: 275 PVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVNDGK 334

Query: 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513
           + F SMS  H + PR  HY CM++LLGR G ++EA  LIR   FK    +W  LL ACR+
Sbjct: 335 KYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRI 394

Query: 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACS 573
           + N+E+ + A  KL  ++P    +YV+L NIY  +   +  AE+ +T+RR+ ++ +P  S
Sbjct: 395 HKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRS 454

Query: 574 WIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVL 632
            IE +   H F+SGD+SH + +EIY+ ++ MM  + + GY P    +L D+DEQ ++R L
Sbjct: 455 SIEWENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRPMTSLVLQDIDEQSKKRAL 514

Query: 633 SYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHF 692
           + HSEKLA+AFGL+ T   + L+I ++ R C DCH+AIKLI++   R+++VRD +RFHHF
Sbjct: 515 AEHSEKLAIAFGLLVTPARSTLRITKNLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHF 574

Query: 693 KDGMCSCGDYW 703
            +G CSC DYW
Sbjct: 575 SEGQCSCKDYW 585



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 153/352 (43%), Gaps = 79/352 (22%)

Query: 249 VGKQLHSCALKMGFGD-NVFVSCALIDMYSK--CGSIEDAQGVFDEMSEKTTVGWNTIIA 305
           +G  LH+ AL+ GF   ++FV  AL++MY+K   G I  A+  FDE   +     N ++A
Sbjct: 65  LGASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLA 124

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
            Y   G   EA  ++  M                                        G 
Sbjct: 125 AYVARGEVAEARKVFDGMS---------------------------------------GR 145

Query: 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
           D+V+ + ++  Y+  G +  AR +FD    ++  SW+++I+ Y      +EA+EL+ +M 
Sbjct: 146 DLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMR 205

Query: 426 LNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ---------------------------- 457
           + G+ P+ ++ ++VLSACS  G    G E+ +                            
Sbjct: 206 VAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIE 265

Query: 458 -SMSRDHKIKPR-AMHYACMIELLGREGLLDEAFALIR---GAPFKTTKNMWAALLTACR 512
            S+   H +  +  + ++ MI  L   GL  +A +L         +  +  +  +L AC 
Sbjct: 266 NSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACT 325

Query: 513 VNGNLELGK--FAA-EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
             G +  GK  F++   ++G+ P ++ +Y  ++++   +G ++EA E+IR++
Sbjct: 326 HVGLVNDGKKYFSSMSDVHGVVP-RMEHYGCMVDLLGRAGHVEEAMELIRSM 376


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 204/577 (35%), Positives = 327/577 (56%), Gaps = 14/577 (2%)

Query: 130 SSTYDALISA-CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLF 188
           ++TY+ L++     L  + + + +F  + +    PD    N +L  H   G    ARRLF
Sbjct: 97  TATYNCLLAGYARALGRLADARHLFDRIPT----PDAVSYNTLLSCHFASGDADGARRLF 152

Query: 189 DEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS 248
             MP R++VS N +++G+  SG   EA  +FL +        S ++  M+   A    +S
Sbjct: 153 ASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVR----NSVSWNAMVSGFACSRDMS 208

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
             ++    A + G   +  +  A++  Y   G++  A   F+ M  +  V WN ++AGY 
Sbjct: 209 AAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYV 265

Query: 309 LHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
            + ++++AL L+  M R++ V+ +  T S ++  C+ L++L   KQ H   ++     ++
Sbjct: 266 KNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNL 325

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              ++LV  Y K G +  A  +F +M  ++V++WNA+I+GY  HG G+EA+ LFE+M   
Sbjct: 326 TVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDE 385

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G+ PN +TF+AVL+AC  +GL + G   F+ M   + I+PR  HY+CM++LL R G L+ 
Sbjct: 386 GVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLER 445

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A  LIR  PF+   + +  LL ACRV  NLE  + AA KL   +P+    YV L NIY  
Sbjct: 446 AVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAG 505

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
           + +  + + V R ++   +   P  SWIE+K   H F S D+ H Q   I+ K+ ++   
Sbjct: 506 ANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAER 565

Query: 608 ISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
           +   GYVP+   +L DVDE  + ++L  HSEKLA++FGLI+T+    L+I ++ R+C DC
Sbjct: 566 MKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDC 625

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           HNA K+I+ +  REI++RD +RFHHF+ G CSCGDYW
Sbjct: 626 HNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 2/208 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +   V N    +AL LF  +  E      +ST  +++  C  L ++   K++  + +   
Sbjct: 261 VAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLP 320

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              +L +   ++ M+ +CG +  A +LF EM  R++V+ N +I+G    GD  EA  LF 
Sbjct: 321 LSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFE 380

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM-GFGDNVFVSCALIDMYSKC 279
            + +E  +    TF  ++ A     L   G +      ++ G    V     ++D+  + 
Sbjct: 381 RMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRA 440

Query: 280 GSIEDAQGVFDEMS-EKTTVGWNTIIAG 306
           G +E A  +   M  E     + T++A 
Sbjct: 441 GKLERAVDLIRSMPFEPHPSAYGTLLAA 468



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 149/353 (42%), Gaps = 69/353 (19%)

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH-GY 312
           H+C+L       V V+ A+     + G +  A+  F     KTT  +N ++AGYA   G 
Sbjct: 64  HTCSLS-----TVAVAAAV-----RRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGR 113

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL-VRHGFGLDIVANS 371
             +A  L+    D     D  +++ ++         + A++  A + VR     D+V+ +
Sbjct: 114 LADARHLF----DRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVR-----DVVSWN 164

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWN----------------------------- 402
            +V   SK G +E+A+ VF  M  +N +SWN                             
Sbjct: 165 TMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAV 224

Query: 403 ---ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
              A+++GY + G   +A+E FE M +     N V++ AV++   ++  ++    +F++M
Sbjct: 225 LWTAMVSGYMDIGNVVKAIEYFEAMPVR----NLVSWNAVVAGYVKNSHADDALRLFRTM 280

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFA-----LIRGAPFKTTKNMWAALLTACRVN 514
            R+  ++P A   + +  LLG   L    F           P      +  +L++     
Sbjct: 281 VREANVQPNASTLSSV--LLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKC 338

Query: 515 GNLELGKFAAEKLYG-MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           G+L     +A KL+G M    +  +  +++ Y   G  KEA  +   ++ +G+
Sbjct: 339 GDLS----SACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGV 387


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 204/577 (35%), Positives = 327/577 (56%), Gaps = 14/577 (2%)

Query: 130 SSTYDALISA-CIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLF 188
           ++TY+ L++     L  + + + +F  + +    PD    N +L  H   G    ARRLF
Sbjct: 48  TATYNCLLAGYARALGRLADARHLFDRIPT----PDAVSYNTLLSCHFASGDADGARRLF 103

Query: 189 DEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS 248
             MP R++VS N +++G+  SG   EA  +FL +        S ++  M+   A    +S
Sbjct: 104 ASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVR----NSVSWNAMVSGFACSRDMS 159

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
             ++    A + G   +  +  A++  Y   G++  A   F+ M  +  V WN ++AGY 
Sbjct: 160 AAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYV 216

Query: 309 LHGYSEEALDLYYEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
            + ++++AL L+  M R++ V+ +  T S ++  C+ L++L   KQ H   ++     ++
Sbjct: 217 KNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNL 276

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              ++LV  Y K G +  A  +F +M  ++V++WNA+I+GY  HG G+EA+ LFE+M   
Sbjct: 277 TVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDE 336

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G+ PN +TF+AVL+AC  +GL + G   F+ M   + I+PR  HY+CM++LL R G L+ 
Sbjct: 337 GVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLER 396

Query: 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547
           A  LIR  PF+   + +  LL ACRV  NLE  + AA KL   +P+    YV L NIY  
Sbjct: 397 AVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAG 456

Query: 548 SGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLE 607
           + +  + + V R ++   +   P  SWIE+K   H F S D+ H Q   I+ K+ ++   
Sbjct: 457 ANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAER 516

Query: 608 ISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDC 666
           +   GYVP+   +L DVDE  + ++L  HSEKLA++FGLI+T+    L+I ++ R+C DC
Sbjct: 517 MKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDC 576

Query: 667 HNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           HNA K+I+ +  REI++RD +RFHHF+ G CSCGDYW
Sbjct: 577 HNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 91/208 (43%), Gaps = 2/208 (0%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160
           +   V N    +AL LF  +  E      +ST  +++  C  L ++   K++  + +   
Sbjct: 212 VAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLP 271

Query: 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
              +L +   ++ M+ +CG +  A +LF EM  R++V+ N +I+G    GD  EA  LF 
Sbjct: 272 LSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFE 331

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM-GFGDNVFVSCALIDMYSKC 279
            + +E  +    TF  ++ A     L   G +      ++ G    V     ++D+  + 
Sbjct: 332 RMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRA 391

Query: 280 GSIEDAQGVFDEMS-EKTTVGWNTIIAG 306
           G +E A  +   M  E     + T++A 
Sbjct: 392 GKLERAVDLIRSMPFEPHPSAYGTLLAA 419



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 79/353 (22%), Positives = 149/353 (42%), Gaps = 69/353 (19%)

Query: 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH-GY 312
           H+C+L       V V+ A+     + G +  A+  F     KTT  +N ++AGYA   G 
Sbjct: 15  HTCSLS-----TVAVAAAV-----RRGDLTGAEEAFASTPRKTTATYNCLLAGYARALGR 64

Query: 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL-VRHGFGLDIVANS 371
             +A  L+    D     D  +++ ++         + A++  A + VR     D+V+ +
Sbjct: 65  LADARHLF----DRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVR-----DVVSWN 115

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWN----------------------------- 402
            +V   SK G +E+A+ VF  M  +N +SWN                             
Sbjct: 116 TMVSGLSKSGAVEEAKAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAV 175

Query: 403 ---ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
              A+++GY + G   +A+E FE M +     N V++ AV++   ++  ++    +F++M
Sbjct: 176 LWTAMVSGYMDIGNVVKAIEYFEAMPVR----NLVSWNAVVAGYVKNSHADDALRLFRTM 231

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFA-----LIRGAPFKTTKNMWAALLTACRVN 514
            R+  ++P A   + +  LLG   L    F           P      +  +L++     
Sbjct: 232 VREANVQPNASTLSSV--LLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKC 289

Query: 515 GNLELGKFAAEKLYG-MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           G+L     +A KL+G M    +  +  +++ Y   G  KEA  +   ++ +G+
Sbjct: 290 GDLS----SACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGV 338


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  365 bits (937), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 177/440 (40%), Positives = 274/440 (62%), Gaps = 1/440 (0%)

Query: 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
           N+ V  A+I  YS+ G +EDA+ +FD+M EK  V W+ +I+GYA     +EAL+L+ EM+
Sbjct: 13  NLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQ 72

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
             G+K D  T   +I  C RL  L+ AK  H  + ++G G  +  N+AL+D Y+K G + 
Sbjct: 73  VFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLG 132

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
            AR VF+KM  +NVISW ++I  +  HG    A++ F QM    ++PN VTF+ VL ACS
Sbjct: 133 AARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACS 192

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
            +GL E G   F SM+ +H I P+  HY CM++L GR  LL +A  L+   P      +W
Sbjct: 193 HAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIW 252

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
            +L+ AC+++G  ELG+FAA+++  +EP+     V L NIY    + ++  E+   ++++
Sbjct: 253 GSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRNLMKQR 312

Query: 565 GLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV 624
           G+     CS IE+  Q + F+  D+ H Q  +IY K+D ++ E+   GY P  +++L DV
Sbjct: 313 GISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYTPNTRSVLVDV 372

Query: 625 DEQ-EQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVV 683
           +E+ ++ V+ +HSEKLA+ +GL+     + ++IV++ R+C DCH  IKL++ V G EI+V
Sbjct: 373 EEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKLVSKVYGMEIIV 432

Query: 684 RDASRFHHFKDGMCSCGDYW 703
           RD +RFHH+K G+CSC DYW
Sbjct: 433 RDRTRFHHYKAGVCSCNDYW 452



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 143/281 (50%), Gaps = 9/281 (3%)

Query: 168 RNRVLLM-----HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL 222
           RN V+L      + R G + DAR +FD+M E++LV  + +I+G  +S    EA  LF ++
Sbjct: 12  RNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEM 71

Query: 223 WEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282
                     T  ++I A A L ++   K +H    K G G  + V+ ALIDMY+KCG++
Sbjct: 72  QVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNL 131

Query: 283 EDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342
             A+GVF++M  +  + W ++I  +A+HG +  AL  +Y+M+D  +K +  TF  ++  C
Sbjct: 132 GAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYAC 191

Query: 343 TRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVIS 400
           +    +E  ++  A +   H           +VD + +   + DA  + + M L  NV+ 
Sbjct: 192 SHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVI 251

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
           W +L+A    HG  E      +Q+L   + P+H   L  LS
Sbjct: 252 WGSLMAACQIHGENELGEFAAKQVL--ELEPDHDGALVQLS 290



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 94/210 (44%), Gaps = 11/210 (5%)

Query: 111 REALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170
           +EAL LF  ++   G      T  ++ISAC  L  +   K +  Y+   G    L + N 
Sbjct: 62  QEALNLFSEMQV-FGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNA 120

Query: 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG 230
           ++ M+ +CG +  AR +F++M  RN++S   +I      GD   A   F  + +E     
Sbjct: 121 LIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPN 180

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNV-----FVSCALIDMYSKCGSIEDA 285
             TF  ++ A +   L+  G++  +    M    N+        C ++D++ +   + DA
Sbjct: 181 GVTFVGVLYACSHAGLVEEGRRTFA---SMTNEHNITPKHEHYGC-MVDLFGRANLLRDA 236

Query: 286 QGVFDEMS-EKTTVGWNTIIAGYALHGYSE 314
             + + M      V W +++A   +HG +E
Sbjct: 237 LELVETMPLAPNVVIWGSLMAACQIHGENE 266



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 41/181 (22%), Positives = 81/181 (44%), Gaps = 36/181 (19%)

Query: 386 ARHVFDKMLCKNVISWNALIAGYGNHGRGE------------------------------ 415
           A+ +F K+  +N++   A+I+GY   GR E                              
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61

Query: 416 -EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474
            EA+ LF +M + G++P+ VT L+V+SAC+R G+ +R   I   + ++       ++ A 
Sbjct: 62  QEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNA- 120

Query: 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534
           +I++  + G L  A  +      +   + W +++ A  ++G+      A +  Y M+ E 
Sbjct: 121 LIDMYAKCGNLGAARGVFEKMQSRNVIS-WTSMINAFAIHGD---ASNALKFFYQMKDEN 176

Query: 535 L 535
           +
Sbjct: 177 I 177


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 202/607 (33%), Positives = 339/607 (55%), Gaps = 38/607 (6%)

Query: 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID--ARRLFDEMP 192
           +LIS      ++ ++K++  ++L  G +   Y+  +++    + G+ +D  ARR+ + + 
Sbjct: 51  SLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQ 110

Query: 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252
            RN      +I G    G + EA  ++  + +E     S TF+ +++A   ++ +++G+Q
Sbjct: 111 FRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGRQ 170

Query: 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGY 312
            H+   ++     V+V   +IDMY KC SI+ A+ VFDEM E+  + W  +IA YA  G 
Sbjct: 171 FHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGN 230

Query: 313 SE-------------------------------EALDLYYEMRDSGVKMDHFTFSMIIRI 341
            E                               EAL+ +  M  SG++ D  T +  I  
Sbjct: 231 MECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISA 290

Query: 342 CTRLASLEHAKQAHAGLVRHGFGLD--IVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
           C +L + ++A +A     + G+     +V  SAL+D YSK G +E+A +VF  M  KNV 
Sbjct: 291 CAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVF 350

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
           +++++I G   HGR +EA+ LF  M+    ++PN VTF+  L ACS SGL ++G ++F S
Sbjct: 351 TYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDS 410

Query: 459 MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
           M +   ++P   HY CM++LLGR G L EA  LI+    +    +W ALL ACR++ N E
Sbjct: 411 MYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPE 470

Query: 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
           + + AAE L+ +EP+ + NY++L N+Y S+G       V + ++ KGL+  PA SW+  K
Sbjct: 471 IAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDK 530

Query: 579 K-QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHS 636
             Q H F  G+ +H  + +I  K++ ++  ++  GY P+  ++  DV +  +R +L  H+
Sbjct: 531 NGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHT 590

Query: 637 EKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGM 696
           EKLA+AF L+ T+  + + I+++ R+C DCH  ++L + VTG+ I++RD  RFHHF+ G 
Sbjct: 591 EKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGD 650

Query: 697 CSCGDYW 703
           CSCGD+W
Sbjct: 651 CSCGDFW 657


>gi|413941558|gb|AFW74207.1| hypothetical protein ZEAMMB73_978994 [Zea mays]
          Length = 580

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 190/476 (39%), Positives = 298/476 (62%), Gaps = 3/476 (0%)

Query: 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290
           S  F ++ +A A L  I  G  +H+ A+ +G G N FV  +L+ +YSKCG ++ A+ +FD
Sbjct: 105 SFAFTSVAKACADLSAIRAGMGIHAHAVLLGLGSNRFVQTSLVVLYSKCGQLDVARKLFD 164

Query: 291 EMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEH 350
            + +K+ V WN +I+GY  +G +  A+++Y EM+ +G   D  TF   +  C +  +L+ 
Sbjct: 165 AIRDKSVVAWNAMISGYEQNGLAGRAIEVYREMQMAGEAPDSATFVATLSACAQAGALDL 224

Query: 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410
            +Q    +V     +++V  +ALV+ Y++ G +  AR  F+ +  +NV++W ++IAGYG 
Sbjct: 225 GRQVDKLIVSERMEMNVVLGAALVNMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYGM 284

Query: 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470
           HG G EAV+LF  M   G  PN VTF+AVLSAC+ +GL   G + F SM   + + PR  
Sbjct: 285 HGHGGEAVKLFNLMRQQGPPPNDVTFVAVLSACAHAGLVSEGRDAFASMKSVYGLVPRVE 344

Query: 471 HYACMIELLGREGLLDEAFALIRGA-PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529
           HY  M+++ GR GLLD+A   I  + P +    +W A+L AC+++ +  LG   AE+L  
Sbjct: 345 HYCSMVDMYGRAGLLDDAMRFIHDSIPGEPGPEVWTAMLGACKMHKDFNLGVEVAERLIA 404

Query: 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQ 589
           +EPE  S+ V+L N+Y  SGK+    +V  T+ ++ L+     S IE+    H+F  G++
Sbjct: 405 LEPESPSHRVLLSNLYALSGKMNHVEKVRDTMIKRRLKKPIGYSLIEIAGVAHLFRMGEK 464

Query: 590 SHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINT 648
           SH +T EIY+ +++++ +I+  GYVP+  ++L +++E+E+   L YH EKLAVAFGL+ T
Sbjct: 465 SHPKTSEIYQYLEKLIEKITDVGYVPKTDSVLHELEEEEREFALRYHGEKLAVAFGLMMT 524

Query: 649 SD-WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           S   TP++I+++ RIC DCH AIK ++ V  REI+VRD  RFHHFK G CSC +YW
Sbjct: 525 SGCTTPIRIIKNLRICEDCHLAIKYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 580



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 162/336 (48%), Gaps = 5/336 (1%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           AL  +  L         S  + ++  AC  L +IR    + ++ +  G   + +++  ++
Sbjct: 89  ALAFYRCL-LAAALPFSSFAFTSVAKACADLSAIRAGMGIHAHAVLLGLGSNRFVQTSLV 147

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
           +++ +CG +  AR+LFD + ++++V+ N +I+G   +G    A  ++ ++        S 
Sbjct: 148 VLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGYEQNGLAGRAIEVYREMQMAGEAPDSA 207

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           TF   + A A    + +G+Q+    +      NV +  AL++MY++CG +  A+  F+ +
Sbjct: 208 TFVATLSACAQAGALDLGRQVDKLIVSERMEMNVVLGAALVNMYARCGLVNKAREWFNML 267

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
            E+  V W ++IAGY +HG+  EA+ L+  MR  G   +  TF  ++  C     +   +
Sbjct: 268 QERNVVTWTSMIAGYGMHGHGGEAVKLFNLMRQQGPPPNDVTFVAVLSACAHAGLVSEGR 327

Query: 353 QAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDA-RHVFDKMLCKNVIS-WNALIAGYG 409
            A A +   +G    +    ++VD Y + G ++DA R + D +  +     W A++    
Sbjct: 328 DAFASMKSVYGLVPRVEHYCSMVDMYGRAGLLDDAMRFIHDSIPGEPGPEVWTAMLGACK 387

Query: 410 NHGRGEEAVELFEQML-LNGMRPNHVTFLAVLSACS 444
            H      VE+ E+++ L    P+H   L+ L A S
Sbjct: 388 MHKDFNLGVEVAERLIALEPESPSHRVLLSNLYALS 423



 Score =  103 bits (257), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 138/288 (47%), Gaps = 39/288 (13%)

Query: 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDI 367
           A  G    AL  Y  +  + +    F F+ + + C  L+++      HA  V  G G + 
Sbjct: 81  ARRGLPAAALAFYRCLLAAALPFSSFAFTSVAKACADLSAIRAGMGIHAHAVLLGLGSNR 140

Query: 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427
              ++LV  YSK G+++ AR +FD +  K+V++WNA+I+GY  +G    A+E++ +M + 
Sbjct: 141 FVQTSLVVLYSKCGQLDVARKLFDAIRDKSVVAWNAMISGYEQNGLAGRAIEVYREMQMA 200

Query: 428 GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487
           G  P+  TF+A LSAC+++G  + G ++   +    +++   +  A ++ +  R GL+++
Sbjct: 201 GEAPDSATFVATLSACAQAGALDLGRQV-DKLIVSERMEMNVVLGAALVNMYARCGLVNK 259

Query: 488 A----------------------------------FALIRGAPFKTTKNMWAALLTACRV 513
           A                                  F L+R          + A+L+AC  
Sbjct: 260 AREWFNMLQERNVVTWTSMIAGYGMHGHGGEAVKLFNLMRQQGPPPNDVTFVAVLSACAH 319

Query: 514 NGNLELGK--FAAEK-LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVI 558
            G +  G+  FA+ K +YG+ P ++ +Y  ++++Y  +G L +A   I
Sbjct: 320 AGLVSEGRDAFASMKSVYGLVP-RVEHYCSMVDMYGRAGLLDDAMRFI 366



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 139/325 (42%), Gaps = 46/325 (14%)

Query: 113 ALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172
           A+E++  ++  G     S+T+ A +SAC    ++   ++V   ++S   E ++ +   ++
Sbjct: 190 AIEVYREMQMAGEAP-DSATFVATLSACAQAGALDLGRQVDKLIVSERMEMNVVLGAALV 248

Query: 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR 232
            M+ RCG++  AR  F+ + ERN+V+   +IAG    G   EA  LF  + ++       
Sbjct: 249 NMYARCGLVNKAREWFNMLQERNVVTWTSMIAGYGMHGHGGEAVKLFNLMRQQGPPPNDV 308

Query: 233 TFATMIRASAGLELISVGKQ-LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA-QGVFD 290
           TF  ++ A A   L+S G+    S     G    V   C+++DMY + G ++DA + + D
Sbjct: 309 TFVAVLSACAHAGLVSEGRDAFASMKSVYGLVPRVEHYCSMVDMYGRAGLLDDAMRFIHD 368

Query: 291 EM-SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349
            +  E     W  ++    +H             +D         F++ + +  RL +LE
Sbjct: 369 SIPGEPGPEVWTAMLGACKMH-------------KD---------FNLGVEVAERLIALE 406

Query: 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL-IAGY 408
               +H  L+ + + L             K   +E  R    K   K  I ++ + IAG 
Sbjct: 407 PESPSHRVLLSNLYALS-----------GKMNHVEKVRDTMIKRRLKKPIGYSLIEIAGV 455

Query: 409 GN--------HGRGEEAVELFEQML 425
            +        H +  E  +  E+++
Sbjct: 456 AHLFRMGEKSHPKTSEIYQYLEKLI 480


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 210/613 (34%), Positives = 346/613 (56%), Gaps = 11/613 (1%)

Query: 93  PSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRV 152
           P +   S I  L  +K   EAL L+  +  + G      TY  +I AC           V
Sbjct: 159 PPSLYNSLIRALSSSKTPLEALPLYHTM-LQSGLKPDHMTYPFVIKACNESSVTWFGLLV 217

Query: 153 FSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDY 212
            ++++ +GFE D Y+ + ++ ++     +  A++LF+    R++VS N +I G +   + 
Sbjct: 218 HTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEM 277

Query: 213 LEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCAL 272
             A ++F    +        ++ TMI   A +  I   K+L     +     N+    ++
Sbjct: 278 GHARMVF----DRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPE----RNLVSWNSM 329

Query: 273 IDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332
           +  + KCG++EDA G+F EM  +  V WN+++A YA  G   EAL L+ +MR  GVK   
Sbjct: 330 LAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTE 389

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392
            T   ++  C  L +L+     H  +  +   ++ +  +ALVD Y+K G+I  A  VF+ 
Sbjct: 390 ATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNA 449

Query: 393 MLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
           M  K+V++WN +IAG   HG  +EA +LF++M   G+ PN +TF+A+LSACS +G+ + G
Sbjct: 450 MESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEG 509

Query: 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACR 512
            ++   MS  + I+P+  HY C+I+LL R G L+EA  LI   P +   +   ALL  CR
Sbjct: 510 QKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCR 569

Query: 513 VNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPAC 572
           ++GN ELG+   ++L  ++P     Y++L NIY ++ K  +A +V   ++  G+  +P  
Sbjct: 570 IHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGV 629

Query: 573 SWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI-SKHGYVPEEKTLLPDVDEQE-QR 630
           S IE+K   H F++GD SH ++ +IY K++ +   + S  GY  +   +L D++E++ + 
Sbjct: 630 SVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEH 689

Query: 631 VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFH 690
            L+ HSEKLA+A+GL++      ++IV++ R+C DCH+ IKLI+ V GREI+VRD +RFH
Sbjct: 690 ALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFH 749

Query: 691 HFKDGMCSCGDYW 703
           HF+DG CSC D+W
Sbjct: 750 HFEDGECSCLDFW 762



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 134/318 (42%), Gaps = 50/318 (15%)

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+ +F  +       +N++I   +      EAL LY+ M  SG+K DH T+  +I+ C  
Sbjct: 148 AKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKACNE 207

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
            +        H  +V+ GF  D    S+L+  Y+    +  A+ +F+    ++V+SWNA+
Sbjct: 208 SSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAM 267

Query: 405 IAGYGNH-------------------------------GRGEEAVELFEQMLLNGMRPNH 433
           I GY  H                               G+ +EA  LF++M       N 
Sbjct: 268 IDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEM----PERNL 323

Query: 434 VTFLAVLSACSRSGLSERGWEIFQSMS-RDHKIKPRAMHYACMIELLGREGLLDEAFAL- 491
           V++ ++L+   + G  E  + +F  M  RD       + +  M+    + G  +EA AL 
Sbjct: 324 VSWNSMLAGFVKCGNVEDAFGLFSEMPCRD------VVSWNSMLACYAQCGKPNEALALF 377

Query: 492 --IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV---LLNIYN 546
             +R    K T+    +LL+AC   G L+ G      +     E   N +V   L+++Y 
Sbjct: 378 DQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIE--VNSIVGTALVDMYA 435

Query: 547 SSGKLKEAAEVIRTLRRK 564
             GK+  A +V   +  K
Sbjct: 436 KCGKISLATQVFNAMESK 453



 Score = 43.1 bits (100), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 36/150 (24%), Positives = 71/150 (47%), Gaps = 6/150 (4%)

Query: 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH---G 362
           G+ L G+S+  L      R      +  +   I+ +     +L H KQ HA ++ H    
Sbjct: 68  GFGLGGWSDAKLQSSMS-RTPNPLTNPPSNPQILSLFNPCKTLRHLKQVHAQIITHHNSP 126

Query: 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFE 422
           F L  +A+ + +  +  +  +  A+ +F  +       +N+LI    +     EA+ L+ 
Sbjct: 127 FQLSALASLSALSPFPTF--LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYH 184

Query: 423 QMLLNGMRPNHVTFLAVLSACSRSGLSERG 452
            ML +G++P+H+T+  V+ AC+ S ++  G
Sbjct: 185 TMLQSGLKPDHMTYPFVIKACNESSVTWFG 214


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 196/555 (35%), Positives = 321/555 (57%), Gaps = 36/555 (6%)

Query: 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244
           R LF ++   N  +   +I      G   +A   +  + +      S TF+ +  A A +
Sbjct: 63  RLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAV 122

Query: 245 ELISVGKQLHSCALKMG-FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE--------- 294
              ++G QLH+  L +G F  +++V+ A+IDMY KCGS+  A+ VFDEM E         
Sbjct: 123 RHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGL 182

Query: 295 ----------------------KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332
                                 K  V W  ++ GYA +    +AL+++  +RD GV++D 
Sbjct: 183 IVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDE 242

Query: 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVF 390
            T   +I  C +L + ++A          GFG+  +++  SAL+D YSK G +E+A  VF
Sbjct: 243 VTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVF 302

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
             M  +NV S++++I G+  HGR   A++LF  ML  G++PNHVTF+ VL+ACS +GL +
Sbjct: 303 KGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVD 362

Query: 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
           +G ++F SM + + + P A  YACM +LL R G L++A  L+   P ++   +W ALL A
Sbjct: 363 QGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGA 422

Query: 511 CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLP 570
             V+GN ++ + A+++L+ +EP+ + NY++L N Y S+G+  + ++V + LR K L+  P
Sbjct: 423 SHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNP 482

Query: 571 ACSWIEVKK-QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQ 629
             SW+E K    H F++GD SH +  EI ++++ ++  +   GY P   +L   ++++E+
Sbjct: 483 GWSWVEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREK 542

Query: 630 R-VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASR 688
           R +L  HSEKLA+AFGL++T   + ++I+++ RIC DCH  +   + VTGR+IVVRD +R
Sbjct: 543 RLLLMAHSEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTR 602

Query: 689 FHHFKDGMCSCGDYW 703
           FHHF +G CSC ++W
Sbjct: 603 FHHFLNGACSCSNFW 617



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 51/235 (21%), Positives = 94/235 (40%), Gaps = 9/235 (3%)

Query: 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI---EDARHVFDKML 394
           ++RI  R +SL  AK+ HA +            + L+   +    +      R +F ++ 
Sbjct: 11  VVRILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLH 70

Query: 395 CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454
             N  +W ALI  Y   G   +A+  +  M    + P   TF A+ SAC+    S  G +
Sbjct: 71  TPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQ 130

Query: 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVN 514
           +                   +I++  + G L  A  +    P +   + W  L+ A    
Sbjct: 131 LHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVIS-WTGLIVAYTRI 189

Query: 515 GNLELGKFAAEKLY-GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568
           G++     AA  L+ G+  + +  +  ++  Y  +    +A EV R LR +G+ +
Sbjct: 190 GDMR----AARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEI 240


>gi|218197313|gb|EEC79740.1| hypothetical protein OsI_21088 [Oryza sativa Indica Group]
          Length = 1068

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 219/603 (36%), Positives = 330/603 (54%), Gaps = 8/603 (1%)

Query: 99   SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
            S I     N R  +AL  F  +   G     S T+ A +SAC    ++R  K + +Y+L 
Sbjct: 470  SMIAGFCFNHRSFDALYYFRYML--GHVKPNSVTFIAALSACAATGALRSGKEIHAYVLR 527

Query: 159  TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
             G   + Y+ N +L ++V+CG    A   F    E+++VS N++++G +  G    A  L
Sbjct: 528  CGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSL 587

Query: 219  FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK 278
            F  +   ++  G     + + A A L  + VG +LH  A   GF   V V+ AL++MY+K
Sbjct: 588  FNQM--MYTSLGRMGACSALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAK 645

Query: 279  CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338
               I+ A  VF  M+EK  V W+++IAG+  +  S +AL  Y+      VK +  TF   
Sbjct: 646  SKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFDAL-YYFRYMLGHVKPNSVTFIAA 704

Query: 339  IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398
            +  C    +L   K+ HA ++R G G +    +AL+D Y K G+   A   F     K+V
Sbjct: 705  LSACAATGALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDV 764

Query: 399  ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
            +SWN +++G+  HG G+ A+ LF QM+  G  P+ VTF+ ++ ACSR+G+  +GWE+F  
Sbjct: 765  VSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHPDEVTFV-LMCACSRAGMVIQGWELFHR 823

Query: 459  MSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE 518
             +    I P   HYACM++LL R G L EA+ LI   P K    +W ALL  CR++ ++E
Sbjct: 824  RTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVE 883

Query: 519  LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVK 578
            LG+ AA+ +  +EP  ++ +V+L ++Y  +GK  + A V +T+R KGL     CSW+EVK
Sbjct: 884  LGELAAKVILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVK 943

Query: 579  KQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEK 638
               H FL+ D+SH Q KEI   +  +   +   G+ P E   L D +  E  +L  HSE+
Sbjct: 944  GVTHAFLTDDESHPQIKEINVVLHGIYERMKACGFAPVES--LEDKEVSEDDILCGHSER 1001

Query: 639  LAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCS 698
            LAVAFGLINT+  T + + ++   C  CH   K I+ +  REI VRD  + H FKDG CS
Sbjct: 1002 LAVAFGLINTTPGTTISVTKNRYTCQSCHVIFKAISEIVRREITVRDTKQLHCFKDGDCS 1061

Query: 699  CGD 701
            CGD
Sbjct: 1062 CGD 1064



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 217/409 (53%), Gaps = 16/409 (3%)

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           L + N +L M VR G +  A R+F +MPER++ S N+++ G    G   EA    LDL+ 
Sbjct: 131 LRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEA----LDLYY 186

Query: 225 EFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
                G R    TF  ++R   G+    +G+++H+  L+ GFGD V V  AL+ MY+KCG
Sbjct: 187 RMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCG 246

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            I  A+ VFD M+    + WN +IAG+  +   E  L+L+  M ++ V+ +  T + +  
Sbjct: 247 DIVAARKVFDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTV 306

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
               L+ +  AK+ H   V+ GF +D+   ++L+  Y+  GR+ DA  +F +M  K+ +S
Sbjct: 307 ASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMS 366

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           W A+I+GY  +G  ++A+E++  M L+ + P+ VT  + L+AC+  G  + G ++ +   
Sbjct: 367 WTAMISGYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGRLDVGIKLHELAQ 426

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNM--WAALLTA-CRVNGNL 517
               I+   +  A ++E+  +   +D+A  + +   F   K++  W++++   C  + + 
Sbjct: 427 NKGFIRYVVVANA-LLEMYAKSKHIDKAIEVFK---FMAEKDVVSWSSMIAGFCFNHRSF 482

Query: 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566
           +   +    L  ++P  ++ ++  L+   ++G L+   E+   + R G+
Sbjct: 483 DALYYFRYMLGHVKPNSVT-FIAALSACAATGALRSGKEIHAYVLRCGI 530



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/350 (30%), Positives = 182/350 (52%), Gaps = 2/350 (0%)

Query: 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171
           EAL+L+  + +  G      T+  ++  C G+   R  + V +++L  GF  ++ + N +
Sbjct: 180 EALDLYYRMLW-AGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNAL 238

Query: 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231
           + M+ +CG ++ AR++FD M   + +S N +IAG  ++ +      LFL + E       
Sbjct: 239 VTMYAKCGDIVAARKVFDGMAMTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNL 298

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
            T  ++  AS  L  +   K++H  A+K GF  +V    +LI MY+  G + DA  +F  
Sbjct: 299 MTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSR 358

Query: 292 MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351
           M  K  + W  +I+GY  +G+ ++AL++Y  M    V  D  T +  +  C  L  L+  
Sbjct: 359 METKDAMSWTAMISGYEKNGFPDKALEVYALMELHNVNPDDVTIASALAACACLGRLDVG 418

Query: 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411
            + H      GF   +V  +AL++ Y+K   I+ A  VF  M  K+V+SW+++IAG+  +
Sbjct: 419 IKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFN 478

Query: 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461
            R  +A+  F  M L  ++PN VTF+A LSAC+ +G    G EI   + R
Sbjct: 479 HRSFDALYYFRYM-LGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLR 527


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 207/605 (34%), Positives = 327/605 (54%), Gaps = 33/605 (5%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  L+ A     S   V+ V ++++  G   + ++   ++  +   G    AR L  E 
Sbjct: 45  TFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSER 104

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA-GLELISVG 250
                V  N +I+G      + EA   F+D+    +     T+ +++ A   G   + +G
Sbjct: 105 ERDTPVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLG 164

Query: 251 KQLHSCALKMGFGDNVFVSCALIDMYSKC------------------------------- 279
            Q+H   +  G   ++ V  AL+DMY++C                               
Sbjct: 165 MQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRL 224

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
           G +++A+ +F  M E+ TV W  +I GY       EAL+++ EM+ S V  D FT   +I
Sbjct: 225 GRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVI 284

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
             C +L +LE  +     + R G  +D    +AL+D YSK G IE A  VF  M  ++  
Sbjct: 285 TACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKF 344

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
           +W A+I G   +G GEEA+E+F +M+     P+ VTF+ VL+AC+ +GL ++G E F SM
Sbjct: 345 TWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSM 404

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLEL 519
              + I P  +HY C+I+L GR G + EA   I   P      +W  LL ACRV+GN E+
Sbjct: 405 RETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEI 464

Query: 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKK 579
           G+   E+L  M+PE  + Y +L NIY    + ++   +  T+  KG++  P CS IE+  
Sbjct: 465 GELVTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNG 524

Query: 580 QPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPE-EKTLLPDVDEQEQRVLSYHSEK 638
             H F++GDQSH  +KEIY K++ ++ +++  GY P+  +  +   +E++Q+VL +HSEK
Sbjct: 525 IIHEFVAGDQSHPMSKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEEEKQKVLFWHSEK 584

Query: 639 LAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCS 698
           LA+AF L+++   T ++IV++ R+C DCHNAIKLI+ + GRE+VVRD +RFHHF+ G CS
Sbjct: 585 LAIAFALLSSEPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCS 644

Query: 699 CGDYW 703
           C DYW
Sbjct: 645 CKDYW 649



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 99/417 (23%), Positives = 182/417 (43%), Gaps = 57/417 (13%)

Query: 184 ARRLFDEMPERNLVSCNM-IIAG---MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIR 239
           ARRL + +P R LV+     +AG   M+  G   +A+                TF  +++
Sbjct: 8   ARRLLEGIPRRCLVAAREDAVAGYARMLARGAMPDAY----------------TFPPLLK 51

Query: 240 ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
           A A     +  + +H+  +K G G N  V+ +L+  Y+  G    A+ +  E    T V 
Sbjct: 52  AVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTPVV 111

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR-LASLEHAKQAHAGL 358
           WN +I+G+       EA   + +M  +G      T+  ++  C +    +    Q H  +
Sbjct: 112 WNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVHGRV 171

Query: 359 VRHGFGLDIVANSALVDFY-------SKW------------------------GRIEDAR 387
           V  G   D+   +ALVD Y       S W                        GR+++AR
Sbjct: 172 VGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVDEAR 231

Query: 388 HVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447
            +F +M  ++ +SW A+I GY    R  EA+E+F +M  + +  +  T ++V++AC++ G
Sbjct: 232 DLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVSADEFTMVSVITACAQLG 291

Query: 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL 507
             E G  +   MSR   IK  A     +I++  + G ++ A  + +    +  K  W A+
Sbjct: 292 ALEMGEWVRVYMSR-QGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHR-DKFTWTAI 349

Query: 508 LTACRVNGNLELGKFAAEKLYGME--PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
           +    VNG  E       ++ G+   P++++ ++ +L     +G + +  E   ++R
Sbjct: 350 ILGLAVNGYGEEAIEMFHRMIGVSETPDEVT-FIGVLTACTHAGLVDKGREFFLSMR 405



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 102/219 (46%), Gaps = 5/219 (2%)

Query: 99  SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
           + I+  V   R+REALE+F  ++          T  ++I+AC  L ++   + V  YM  
Sbjct: 247 AMIDGYVQAARFREALEMFREMQCS-NVSADEFTMVSVITACAQLGALEMGEWVRVYMSR 305

Query: 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
            G + D ++ N ++ M+ +CG +  A  +F +M  R+  +   II G+  +G   EA  +
Sbjct: 306 QGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEM 365

Query: 219 FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH-SCALKMGFGDNVFVSCALIDMYS 277
           F  +          TF  ++ A     L+  G++   S         NV     +ID++ 
Sbjct: 366 FHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFG 425

Query: 278 KCGSIEDAQGVFDE--MSEKTTVGWNTIIAGYALHGYSE 314
           + G I +A    D+  M+  +T+ W T++A   +HG SE
Sbjct: 426 RAGKITEALDAIDQMPMTPNSTI-WGTLLAACRVHGNSE 463


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 199/569 (34%), Positives = 316/569 (55%), Gaps = 40/569 (7%)

Query: 175 HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTF 234
           +VR   ++ AR L D +     V+ N +I+G +  G Y EAF  F  +          T+
Sbjct: 227 YVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTY 286

Query: 235 ATMIRASAG----LELISVGKQLHSCALKMGFGDN----VFVSCALIDMYSK-------- 278
            ++I A       + + + G+Q+H   L+     +    + V+ ALI  Y+K        
Sbjct: 287 TSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEAR 346

Query: 279 -----------------------CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
                                     IE+A  +F EM E+  + W  +I+G A +G+ EE
Sbjct: 347 RVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEE 406

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375
            L L+ +M+  G++   + F+  I  C+ L SL++ +Q H+ ++R G    + A +AL+ 
Sbjct: 407 GLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALIT 466

Query: 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435
            YS+ G +E A  VF  M   + +SWNA+IA    HG G +A+ELFEQM+   + P+ +T
Sbjct: 467 MYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRIT 526

Query: 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495
           FL +L+AC+ +GL + G   F +M   + I P   HYA +I+LL R G+  +A ++I+  
Sbjct: 527 FLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSM 586

Query: 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555
           PF+    +W ALL  CR++GN+ELG  AA++L  + P +   Y++L N+Y + G+  E A
Sbjct: 587 PFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVA 646

Query: 556 EVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVP 615
            V   +R +G++  P CSW+EV+   HVFL  D  H + + +Y  + +++ E+ K GYVP
Sbjct: 647 RVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVP 706

Query: 616 EEKTLLPDVD-EQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIA 674
           + K +L D++ E ++  LS HSEKLAV +G++       +++ ++ RIC DCHNA K I+
Sbjct: 707 DTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYIS 766

Query: 675 MVTGREIVVRDASRFHHFKDGMCSCGDYW 703
            V  REIVVRD  RFHHFK+G CSCG+YW
Sbjct: 767 KVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 128/537 (23%), Positives = 225/537 (41%), Gaps = 136/537 (25%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---------------- 193
           + V +++L++GF+P+ ++ NR++ ++ +   +  AR+LFD++P+                
Sbjct: 25  RAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSS 84

Query: 194 -----------------RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
                            R+ VS N +I       D   A  LF+ +          TF++
Sbjct: 85  GNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSS 144

Query: 237 MIRASAGLELISVGKQ----LHSCALKMGFGDNVFVSCALIDMYSKCGS---------IE 283
           ++ A   L LI+  ++    LH   +K+G      V+ AL+  Y  C S         + 
Sbjct: 145 VLSA---LSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMA 201

Query: 284 DAQGVFDE---------------------------------MSEKTTVGWNTIIAGYALH 310
            A+ VFDE                                 ++    V WN +I+GY   
Sbjct: 202 SARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRR 261

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC----TRLASLEHAKQAHAGLVR------ 360
           G  EEA D +  M   G++ D +T++ +I  C     ++      +Q H  ++R      
Sbjct: 262 GLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPS 321

Query: 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN---------- 410
           H F L +  N+AL+ FY+K+ R+ +AR VFDKM  +++ISWNA+++GY N          
Sbjct: 322 HHFVLSV--NNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSI 379

Query: 411 ---------------------HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449
                                +G GEE ++LF QM   G+ P    F   ++ACS  G  
Sbjct: 380 FSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSL 439

Query: 450 ERGWEIFQSMSR-DHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALL 508
           + G +I   + R  H     A +   +I +  R G+++ A ++    P+  + + W A++
Sbjct: 440 DNGQQIHSQVIRLGHDSGLSAGN--ALITMYSRCGVVESAESVFLTMPYVDSVS-WNAMI 496

Query: 509 TACRVNGNLELGKFAAEKLYGMEPEKL----SNYVVLLNIYNSSGKLKEAAEVIRTL 561
            A   +G+   G  A E    M  E +      ++ +L   N +G +KE      T+
Sbjct: 497 AALAQHGH---GVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTM 550



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 163/359 (45%), Gaps = 46/359 (12%)

Query: 110 YREALELFEILEFEGGFDVGSSTYDALISAC------IGLRSIREVKRVFSYMLSTGFEP 163
           Y EA + F  +    G      TY +LISAC      +G+ +    ++V  Y+L T  EP
Sbjct: 264 YEEAFDTFRRMH-SMGIQEDEYTYTSLISACGSCNEKMGMFNCG--RQVHGYILRTVVEP 320

Query: 164 D----LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
                L + N ++  + +   MI+ARR+FD+MP R+++S N +++G +++    EA  +F
Sbjct: 321 SHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIF 380

Query: 220 LDLWEE----------------FSDCGSRTFATM---------------IRASAGLELIS 248
            ++ E                 F + G + F  M               I A + L  + 
Sbjct: 381 SEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLD 440

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
            G+Q+HS  +++G    +    ALI MYS+CG +E A+ VF  M    +V WN +IA  A
Sbjct: 441 NGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALA 500

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL-VRHGFGLDI 367
            HG+  +A++L+ +M    +  D  TF  I+  C     ++  +     +  R+G     
Sbjct: 501 QHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGE 560

Query: 368 VANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
              + L+D   + G    A+ V   M        W AL+AG   HG  E  ++  +++L
Sbjct: 561 DHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLL 619



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 112/258 (43%), Gaps = 53/258 (20%)

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE-------------- 294
           + + +H+  L  GF  N F+   LI++Y K  +I  A+ +FD++ +              
Sbjct: 23  IARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 295 -------------------KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
                              + TV +N +I  Y+       AL+L+ +M+  G   D FTF
Sbjct: 83  SSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTF 142

Query: 336 SMIIRICTRLASLE-HAKQAHAGLVRHGFGLDIVANSALVDFY---------SKWGRIED 385
           S ++   + +A  E H +  H  +++ G  L     +AL+  Y              +  
Sbjct: 143 SSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMAS 202

Query: 386 ARHVFDKMLCKNVI---SWNALIAGYGNHGRGEEAVELFEQMLLNGMR-PNHVTFLAVLS 441
           AR VFD+   KN I   SW  +IAGY    R ++ V   E  LL+G+  P  V + A++S
Sbjct: 203 ARKVFDET-PKNQIYEPSWTTMIAGY---VRNDDLVAARE--LLDGLTYPIDVAWNAMIS 256

Query: 442 ACSRSGLSERGWEIFQSM 459
              R GL E  ++ F+ M
Sbjct: 257 GYVRRGLYEEAFDTFRRM 274



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 106/246 (43%), Gaps = 13/246 (5%)

Query: 71  KPNKIYTEELKESSLPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGS 130
           + N I++E  + + L  T M          I  L  N    E L+LF  ++ EG  +   
Sbjct: 375 EANSIFSEMPERNVLTWTVM----------ISGLAQNGFGEEGLKLFNQMKSEG-LEPCD 423

Query: 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190
             +   I+AC  L S+   +++ S ++  G +  L   N ++ M+ RCG++  A  +F  
Sbjct: 424 YAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLT 483

Query: 191 MPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250
           MP  + VS N +IA +   G  ++A  LF  + +E       TF T++ A     LI  G
Sbjct: 484 MPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEG 543

Query: 251 KQ-LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYA 308
           +    +   + G          LID+  + G    AQ V   M  E     W  ++AG  
Sbjct: 544 RHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCR 603

Query: 309 LHGYSE 314
           +HG  E
Sbjct: 604 IHGNME 609


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 206/560 (36%), Positives = 315/560 (56%), Gaps = 33/560 (5%)

Query: 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236
           + G++ DA  L    P RN++S   +I+G   +G   EA   F  +  +  +    T   
Sbjct: 183 KLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIG 242

Query: 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE------DAQG--- 287
           ++ A A L+ +  G+ LH    + G   +  +  ALIDMY+KCG I       DA G   
Sbjct: 243 LLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGR 302

Query: 288 -----------------------VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324
                                  +FD+M ++  V +N++I GY   G   EAL L+ +MR
Sbjct: 303 RPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMR 362

Query: 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE 384
              ++ D+FT   ++  C  L +L   +  HA + +    +DI   +AL+D Y K GR+E
Sbjct: 363 RHDLRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVE 422

Query: 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444
           +A  VF  M  ++V +W+A+IAG   +G G+ A+E F  M ++G +PN VT++A+L+ACS
Sbjct: 423 EASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACS 482

Query: 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMW 504
            S L + G   F+ M   H I+P   HY CMI+LLGR GLLDEA  L+R  P +    +W
Sbjct: 483 HSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIW 542

Query: 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564
           A++L+ACRV+ +  L + AAE L  +EP++ + YV L NIY  S + ++A+++ R +  +
Sbjct: 543 ASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEER 602

Query: 565 GLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV 624
           G++     S I V  Q H F+  D++H Q  EI   ++ +   +   GY P    +  DV
Sbjct: 603 GVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLKSVGYSPITSQITVDV 662

Query: 625 DEQE-QRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVV 683
           DE+E +  L  HSEK+A+AFGLI+ +   PL I+++ R+C DCH+AIKLI+ +  REI+V
Sbjct: 663 DEEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCEDCHSAIKLISRIWNREIIV 722

Query: 684 RDASRFHHFKDGMCSCGDYW 703
           RD SRFHHF+DG CSC D+W
Sbjct: 723 RDRSRFHHFRDGTCSCNDFW 742



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 118/527 (22%), Positives = 213/527 (40%), Gaps = 112/527 (21%)

Query: 144 RSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID------ARRLFDEMPERNLV 197
           RS+R+   + + ++++G        + +L   V C    D      A  LFD MP    +
Sbjct: 10  RSVRQAAELHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLFDRMPCSTFL 69

Query: 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA-GLELISVGKQLHSC 256
               + A    S       +L+  +        + TF  + +  A G   + + + LH+ 
Sbjct: 70  FDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAA 129

Query: 257 ALKMGFGDNV-FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA------- 308
             +      V  VS  +I MY + G   DA+  FD++  K  V W T+I+G A       
Sbjct: 130 CFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDD 189

Query: 309 -------------------LHGYSE-----EALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
                              + GYS      EA+D +  M   G++ D  T   ++  C +
Sbjct: 190 AWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEVTVIGLLSACAQ 249

Query: 345 LASLEHAKQAH-----AGLVRHG----FGLDIVAN-----------------------SA 372
           L  L   +  H      G++  G      +D+ A                        +A
Sbjct: 250 LKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNA 309

Query: 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432
           ++D Y K G ++ AR++FD+M  ++++++N+LI GY + GR  EA+ LF QM  + +R +
Sbjct: 310 MIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRAD 369

Query: 433 HVTFLAVLSACS-----------------------------------RSGLSERGWEIFQ 457
           + T +++L+AC+                                   + G  E    +FQ
Sbjct: 370 NFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQ 429

Query: 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNL 517
           +MS        AM        +G+  L  E F  ++   F+     + A+LTAC  +  L
Sbjct: 430 AMSVRDVHTWSAMIAGLAFNGMGKAAL--EYFFWMKVDGFQPNSVTYIAILTACSHSCLL 487

Query: 518 ELGKFAAEK---LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           + G+   E+   L+ + P  + +Y  ++++   SG L EA +++RT+
Sbjct: 488 DEGRLYFEEMRLLHNIRP-LIEHYGCMIDLLGRSGLLDEAMDLVRTM 533



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 133/313 (42%), Gaps = 37/313 (11%)

Query: 288 VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR--- 344
           +FD M   T +    + A +      E  L LY  MR +GV  D FTF  + + C R   
Sbjct: 59  LFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKCCARGRA 118

Query: 345 ---LASLEHA-----------------------KQAHAGLVRHGFG----LDIVANSALV 374
              L  + HA                       +   AG  R  F      D VA + ++
Sbjct: 119 HVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVI 178

Query: 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434
              +K G ++DA  +      +NVISW  LI+GY   GR  EAV+ F  ML +G+ P+ V
Sbjct: 179 SGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIEPDEV 238

Query: 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494
           T + +LSAC++      G  + + +     +    +  A +I++  + G +  A+ +   
Sbjct: 239 TVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVA-LIDMYAKCGDIGRAWEVFDA 297

Query: 495 APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554
                    W A++      G++++ ++  ++   ME   L  +  L+  Y   G+L+EA
Sbjct: 298 LGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQ---MEDRDLVTFNSLITGYIHGGRLREA 354

Query: 555 AEVIRTLRRKGLR 567
             +   +RR  LR
Sbjct: 355 LLLFMQMRRHDLR 367


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  365 bits (936), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 198/544 (36%), Positives = 317/544 (58%), Gaps = 11/544 (2%)

Query: 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLD 221
           EPD    N +L  +VR   M  A+  F++MP ++  S N +I G   +    +A  LFL 
Sbjct: 35  EPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLI 94

Query: 222 LWEEFSDCGSRTFATMIRASAGL-ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
           +  +       T+  MI       +L S  K       K     +V    A+I  Y K G
Sbjct: 95  MPTK----NVVTWNAMISGYVECGDLDSALKLFEKAPFK-----SVVAWTAMITGYMKLG 145

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
            I  A+ +F++M EK  V WN +IAGY  +  +E+ + L+  M   G++ +  T S  + 
Sbjct: 146 RIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALL 205

Query: 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS 400
            C+ L++L+  +Q H  + +     D  A ++L+  Y K G +ED   +F ++  ++V++
Sbjct: 206 GCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVT 265

Query: 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460
           WNA+I+GY  HG G++A+ LF++M+  GM+P+ +TF+AVL AC+ +G ++ G + F SM+
Sbjct: 266 WNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMA 325

Query: 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELG 520
           +D+ +  +  HY CM++LLGR G L EA  LI   PFK    ++  LL ACR++ N E+ 
Sbjct: 326 KDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMA 385

Query: 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQ 580
           +FA++KL  ++P   + YV L N+Y ++ +    A V ++++   +   P  SWIEVK  
Sbjct: 386 EFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPGYSWIEVKSM 445

Query: 581 PHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDV-DEQEQRVLSYHSEKL 639
            H F SGD+ H +   I+ K+  +  ++   GYVP+ +  L DV +EQ++++L +HSEKL
Sbjct: 446 AHQFRSGDKFHPELASIHGKLKELEKKMKLAGYVPDLEFALHDVGEEQKEQLLLWHSEKL 505

Query: 640 AVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSC 699
           A+A+GLI     TP+++ ++ R+C DCH AIK I+ +  REI+VRD +RFHHFKDG CSC
Sbjct: 506 AIAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYISQIERREIIVRDTTRFHHFKDGHCSC 565

Query: 700 GDYW 703
            DYW
Sbjct: 566 ADYW 569



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 105/234 (44%), Gaps = 7/234 (2%)

Query: 85  LPDTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLR 144
           +P+  +   +A I   IE    N R  + ++LF  +    G    SST  + +  C  L 
Sbjct: 157 MPEKNLVTWNAMIAGYIE----NHRAEDGVKLFRTM-VGFGIQPNSSTLSSALLGCSELS 211

Query: 145 SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIA 204
           +++  ++V   +  +    D      ++ M+ +CG++ D  +LF ++P R++V+ N +I+
Sbjct: 212 ALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVTWNAMIS 271

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG-KQLHSCALKMGFG 263
           G    G+  +A  LF ++ E+       TF  ++ A        +G K  HS A   G  
Sbjct: 272 GYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDLGVKYFHSMAKDYGLV 331

Query: 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYSEEA 316
                   ++D+  + G + +A  + ++M  K     + T++    +H  +E A
Sbjct: 332 AKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEMA 385



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 98/203 (48%), Gaps = 17/203 (8%)

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
           +  NS L     K G++++A+ +F K+   + +S+N +++ Y  +   E A   FE M +
Sbjct: 7   VTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPI 66

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486
                +  ++  +++  +++   ++  ++F  M   + +      +  MI      G LD
Sbjct: 67  K----DTPSWNTMITGFAQNQQMDKARDLFLIMPTKNVVT-----WNAMISGYVECGDLD 117

Query: 487 EAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA-AEKLYGMEPEK-LSNYVVLLNI 544
            A  L   APFK+    W A++T     G ++LG+   AE+L+   PEK L  +  ++  
Sbjct: 118 SALKLFEKAPFKSVV-AWTAMIT-----GYMKLGRIGLAERLFEKMPEKNLVTWNAMIAG 171

Query: 545 YNSSGKLKEAAEVIRTLRRKGLR 567
           Y  + + ++  ++ RT+   G++
Sbjct: 172 YIENHRAEDGVKLFRTMVGFGIQ 194


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 176/434 (40%), Positives = 265/434 (61%), Gaps = 1/434 (0%)

Query: 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330
           A++  Y+K G ++ A+ +FD M E+  V WN +I GY  +G   EAL L+  M  +  K 
Sbjct: 129 AMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKP 188

Query: 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVF 390
           +  T   ++  C +L +LE  +  H+ +  +G   ++   +ALVD YSK G +EDAR VF
Sbjct: 189 NEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVF 248

Query: 391 DKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450
           DK+  K+V++WN++I GY  HG  +EA++LF+ M   G+ P ++TF+ +LSAC  SG   
Sbjct: 249 DKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVT 308

Query: 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTA 510
            GW+IF  M  ++ I+P+  HY CM+ LLGR G +++A+ L++    +    +W  LL A
Sbjct: 309 EGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGA 368

Query: 511 CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLP 570
           CR++G + LG+   E L          Y++L NIY + G     A +   ++  G++  P
Sbjct: 369 CRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEP 428

Query: 571 ACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-Q 629
            CS IEV  + H FL+G  +H + KEIY  ++ +   +  HGY P+   +L D+ E E +
Sbjct: 429 GCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKE 488

Query: 630 RVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRF 689
           R L  HSEKLA+AFGLINT   T ++IV++ R+C DCH   KLI+ +TGR+IVVRD +RF
Sbjct: 489 RSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRF 548

Query: 690 HHFKDGMCSCGDYW 703
           HHF +G CSCGDYW
Sbjct: 549 HHFVNGSCSCGDYW 562



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 142/289 (49%), Gaps = 28/289 (9%)

Query: 156 MLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215
           +  T  E  L     +L  + + G +  AR LFD M ER+ V  N++I G   +G   EA
Sbjct: 115 LFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEA 174

Query: 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDM 275
            +LF  + +  +     T  +++ A   L  +  G+ +HS     G   NV V  AL+DM
Sbjct: 175 LVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDM 234

Query: 276 YSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF 335
           YSKCGS+EDA+ VFD++ +K  V WN++I GYA+HG+S+EAL L+  M   G+   + TF
Sbjct: 235 YSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITF 294

Query: 336 SMIIRICTRLASLEHAKQAHAGLVRHG----------FGLD--IVANSALVDFYSKWGRI 383
             I+  C            H+G V  G          +G++  I     +V+   + G +
Sbjct: 295 IGILSAC-----------GHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHV 343

Query: 384 EDARHVFDKM-LCKNVISWNALIAGYGNHGR---GEEAVELF-EQMLLN 427
           E A  +   M +  + + W  L+     HG+   GE+ VEL  +Q L N
Sbjct: 344 EQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLAN 392



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 138/347 (39%), Gaps = 76/347 (21%)

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHG 311
           Q+H+   + G   +  ++  L   Y+  G ++ +  +F      +   W  II G+AL G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371
               A  L+  M +                                         +V+ +
Sbjct: 108 DVVSAQQLFDTMPEK---------------------------------------SLVSLT 128

Query: 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431
           A++  Y+K G ++ AR +FD M  ++ + WN +I GY  +G   EA+ LF +ML    +P
Sbjct: 129 AMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKP 188

Query: 432 NHVTFLAVLSACSRSGLSERGWEIFQSMSRD----------------------------- 462
           N VT L+VLSAC + G  E G  +   +  +                             
Sbjct: 189 NEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVF 248

Query: 463 HKIKPR-AMHYACMIELLGREGLLDEAFALIRG---APFKTTKNMWAALLTACRVNGNLE 518
            KI  +  + +  MI      G   EA  L +         T   +  +L+AC  +G + 
Sbjct: 249 DKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVT 308

Query: 519 LGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562
            G     K+   YG+EP K+ +Y  ++N+   +G +++A E+++ + 
Sbjct: 309 EGWDIFNKMKDEYGIEP-KIEHYGCMVNLLGRAGHVEQAYELVKNMN 354



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 102/220 (46%), Gaps = 5/220 (2%)

Query: 96  GIC--SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVF 153
           G+C    I+    N    EAL LF  +  +        T  +++SAC  L ++   + V 
Sbjct: 155 GVCWNVMIDGYTQNGMPNEALVLFRRM-LKAKAKPNEVTVLSVLSACGQLGALESGRWVH 213

Query: 154 SYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
           SY+ + G + ++++   ++ M+ +CG + DAR +FD++ ++++V+ N +I G    G   
Sbjct: 214 SYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQ 273

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL-HSCALKMGFGDNVFVSCAL 272
           EA  LF  +        + TF  ++ A      ++ G  + +    + G    +     +
Sbjct: 274 EALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCM 333

Query: 273 IDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHG 311
           +++  + G +E A  +   M+ E   V W T++    LHG
Sbjct: 334 VNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHG 373


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  364 bits (935), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 204/582 (35%), Positives = 322/582 (55%), Gaps = 46/582 (7%)

Query: 164 DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLW 223
           D ++    + M+  CG +  AR +FDEM  R++V+ N +I      G   EAF LF ++ 
Sbjct: 145 DPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFGLVDEAFKLFEEMK 204

Query: 224 EE------------FSDCG-----------------------SRTFATMIRASAGLELIS 248
           +              S CG                       +     ++   AG   + 
Sbjct: 205 DSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLTALVTMYAGAGCMD 264

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           + ++      KM    N+FVS A++  YSKCG ++DAQ +FD+  +K  V W T+I+ Y 
Sbjct: 265 MAREFFR---KMSV-RNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVCWTTMISAYV 320

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIV 368
              Y +EAL ++ EM  SG+K D  +   +I  C  L  L+ AK  H+ +  +G   ++ 
Sbjct: 321 ESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIHVNGLESELS 380

Query: 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428
            N+AL++ Y+K G ++  R VF+KM  +NV+SW+++I     HG   +A+ LF +M    
Sbjct: 381 INNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALSLFARMKQEN 440

Query: 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488
           + PN VTF+ VL  CS SGL E G +IF SM+ ++ I P+  HY CM++L GR  LL EA
Sbjct: 441 VEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLFGRANLLREA 500

Query: 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548
             +I   P  +   +W +L++ACR++G LELGKFAA+++  +EP+     V++ NIY   
Sbjct: 501 LEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYARE 560

Query: 549 GKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608
            + ++   + R +  K +      S I+   + H FL GD+ H Q+ EIY K+D ++ ++
Sbjct: 561 QRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKL 620

Query: 609 SKHGYVPEEKTLLPDVDEQEQRVLS-YHSEKLAVAFGLINTSDWTP------LQIVQSHR 661
              GYVP+  ++L DV+E+E++ L  +HSEKLA+ FGL+N            ++IV++ R
Sbjct: 621 KLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLR 680

Query: 662 ICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +C DCH   KL++ V  REI+VRD +RFH +K+G+CSC DYW
Sbjct: 681 VCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 185/401 (46%), Gaps = 78/401 (19%)

Query: 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292
           +F  +++A + +  +  G +LH  A K+    + FV    +DMY+ CG I  A+ VFDEM
Sbjct: 113 SFLPILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEM 172

Query: 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAK 352
           S +  V WNT+I  Y   G  +EA  L+ EM+DS V  D      I+  C R  ++ + +
Sbjct: 173 SHRDVVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNR 232

Query: 353 QAHAGLVRHGFGLD-------------------------------IVANSALVDFYSKWG 381
             +  L+ +   +D                               +  ++A+V  YSK G
Sbjct: 233 AIYEFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCG 292

Query: 382 RIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441
           R++DA+ +FD+   K+++ W  +I+ Y      +EA+ +FE+M  +G++P+ V+  +V+S
Sbjct: 293 RLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVIS 352

Query: 442 ACSRSGLSERG-W----------------------------------EIFQSMSRDHKIK 466
           AC+  G+ ++  W                                  ++F+ M R + + 
Sbjct: 353 ACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVS 412

Query: 467 PRAMHYACMIELLGREGLLDEA---FALIRGAPFKTTKNMWAALLTACRVNGNLELGK-- 521
                ++ MI  L   G   +A   FA ++    +  +  +  +L  C  +G +E GK  
Sbjct: 413 -----WSSMINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKI 467

Query: 522 FAA-EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           FA+    Y + P KL +Y  +++++  +  L+EA EVI ++
Sbjct: 468 FASMTDEYNITP-KLEHYGCMVDLFGRANLLREALEVIESM 507



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 133/286 (46%), Gaps = 10/286 (3%)

Query: 285 AQGVFDEM-SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343
           A  VF  + S   ++ +N  +   +        +  Y  +R  G ++D F+F  I++  +
Sbjct: 63  ALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVS 122

Query: 344 RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403
           ++++L    + H    +     D    +  +D Y+  GRI  AR+VFD+M  ++V++WN 
Sbjct: 123 KVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNT 182

Query: 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH 463
           +I  Y   G  +EA +LFE+M  + + P+ +    ++SAC R+G       I++ +  ++
Sbjct: 183 MIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLI-EN 241

Query: 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523
            ++        ++ +    G +D A    R     + +N++   ++   V+G  + G+  
Sbjct: 242 DVRMDTHLLTALVTMYAGAGCMDMAREFFRKM---SVRNLF---VSTAMVSGYSKCGRLD 295

Query: 524 AEKLYGMEPEK--LSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567
             ++   + EK  L  +  +++ Y  S   +EA  V   +   G++
Sbjct: 296 DAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIK 341



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 106/227 (46%), Gaps = 3/227 (1%)

Query: 87  DTQMKKPSAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI 146
           D   KK      + I   V +   +EAL +FE +   G      S + ++ISAC  L  +
Sbjct: 302 DQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMF-SVISACANLGIL 360

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGM 206
            + K V S +   G E +L + N ++ M+ +CG +   R +F++MP RN+VS + +I  +
Sbjct: 361 DKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINAL 420

Query: 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH-SCALKMGFGDN 265
              G+  +A  LF  + +E  +    TF  ++   +   L+  GK++  S   +      
Sbjct: 421 SMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPK 480

Query: 266 VFVSCALIDMYSKCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHG 311
           +     ++D++ +   + +A  V + M      V W ++++   +HG
Sbjct: 481 LEHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHG 527


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 199/589 (33%), Positives = 332/589 (56%), Gaps = 35/589 (5%)

Query: 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209
           K++ + ++ +G          ++  + +CG++ DA +LFD +P+++ V+   +++    S
Sbjct: 28  KKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLS 87

Query: 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV--GKQLHSCALKMGFGDNVF 267
               +AF + L +  E        F+++I+A A L  + V  GKQLH+  L   F ++  
Sbjct: 88  NLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDDV 147

Query: 268 VSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY------- 320
           V  +L+DMY+K    +  + VFD + E +++ W  +I+GYA  G   EAL+L+       
Sbjct: 148 VKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFKN 207

Query: 321 ------------------------YEMRDSGVKM-DHFTFSMIIRICTRLASLEHAKQAH 355
                                    EMR  GV + D    S ++  C   A  E  KQ H
Sbjct: 208 LYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQVH 267

Query: 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415
             ++  G+   +  ++ALVD Y+K   +  A+++F +M  K+V+SW ++I G   HG  E
Sbjct: 268 CVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAE 327

Query: 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475
           EA+ L++ M+L G++PN VTF+ ++ ACS  GL  +G  +F+SM  D  I+P   HY C+
Sbjct: 328 EALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCL 387

Query: 476 IELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535
           ++L  R G LDEA  LIR  P K  +  WAALL+AC+ +GN ++    A+ L  ++PE  
Sbjct: 388 LDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPEDP 447

Query: 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTK 595
           S+Y++L NIY  +G  +  + V + +  K ++ +P  S +++ ++  VF +G+ S     
Sbjct: 448 SSYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMKD 507

Query: 596 EIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQE-QRVLSYHSEKLAVAFGLINTSDWTPL 654
           EI   + ++  E+ + GYVP+  ++L D+D+QE +R L +HSE+LA+A+GL+     T +
Sbjct: 508 EILGLMTKLDSEMRRRGYVPDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTTI 567

Query: 655 QIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           +IV++ R+C DCH  +KLI+ +T REI VRD  R+HHFKDG CSC D+W
Sbjct: 568 RIVKNLRVCGDCHTVLKLISAITSREIYVRDVKRYHHFKDGKCSCNDFW 616



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 111/216 (51%), Gaps = 6/216 (2%)

Query: 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA 308
           + K+LH+  +K G   +      LID Y KCG ++DA  +FD + ++  V W T+++   
Sbjct: 26  IAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACN 85

Query: 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS--LEHAKQAHAGLVRHGFGLD 366
           L     +A  +   +   G++ DHF FS +I+ C  L S  ++  KQ HA  +   F  D
Sbjct: 86  LSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFED 145

Query: 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426
            V  S+LVD Y+K+   +  R VFD +   + ISW A+I+GY   GR  EA+ELF +   
Sbjct: 146 DVVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPF 205

Query: 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462
                N   + A++S   +SG +     +F  M R+
Sbjct: 206 K----NLYAWTALISGLVQSGNANDALYLFVEMRRE 237



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 111/228 (48%), Gaps = 4/228 (1%)

Query: 101 IEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV-KRVFSYMLST 159
           I  LV +    +AL LF  +  EG          +++ AC    ++RE+ K+V   +++ 
Sbjct: 215 ISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACAN-SAVRELGKQVHCVVITL 273

Query: 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF 219
           G+E  L++ N ++ M+ +C  ++ A+ +F EM  +++VS   II G    G   EA  L+
Sbjct: 274 GYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLY 333

Query: 220 LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSCALIDMYSK 278
            D+          TF  +I A + + L+S G+ L    ++  G   ++     L+D++S+
Sbjct: 334 DDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSR 393

Query: 279 CGSIEDAQGVFDEMSEKTT-VGWNTIIAGYALHGYSEEALDLYYEMRD 325
            G +++A+ +   M  K     W  +++    HG ++ A+ +   + D
Sbjct: 394 SGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLD 441


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 193/568 (33%), Positives = 316/568 (55%), Gaps = 16/568 (2%)

Query: 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL 196
           + AC     +R    +   ++ +  E D+ ++  ++ M+ +CG +  A R+F+ +  +N+
Sbjct: 232 LGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNI 291

Query: 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256
           V+ N +I GM +    +   +  ++L    S  G           A LE    GK +H  
Sbjct: 292 VAWNAMIGGMQEDDKVIPDVITMINLLPSCSQSG-----------ALLE----GKSIHGF 336

Query: 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316
           A++  F   + +  AL+DMY KCG ++ A+ VF++M+EK  V WNT++A Y  +   +EA
Sbjct: 337 AIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEA 396

Query: 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376
           L ++  + +  +K D  T + ++     LAS    KQ H+ +++ G G +   ++A+V  
Sbjct: 397 LKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYM 456

Query: 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF 436
           Y+K G ++ AR  FD M+CK+V+SWN +I  Y  HG G  +++ F +M   G +PN  TF
Sbjct: 457 YAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTF 516

Query: 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496
           +++L+ACS SGL + GW  F SM  ++ I P   HY CM++LLGR G LDEA   I   P
Sbjct: 517 VSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMP 576

Query: 497 FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556
              T  +W +LL A R + ++ L + AA  +  ++ +    YV+L N+Y  +G+ ++   
Sbjct: 577 LVPTARIWGSLLAASRNHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDR 636

Query: 557 VIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPE 616
           +   ++ +GL     CS +++  +   F++ D+SH  T  IY  +D ++ +I +  Y+  
Sbjct: 637 IKYLMKEQGLVKTVGCSMVDINGRSESFINQDRSHAHTNLIYDVLDILLKKIGEDIYLHS 696

Query: 617 EKTLLP-DVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAM 675
                P DV ++      YHS KLA+ FGLI+T+   P+ + ++ RIC DCH A K I+ 
Sbjct: 697 LTKFRPLDVAKKRGNSPEYHSVKLAICFGLISTAIGNPVIVRKNTRICDDCHRAAKKISQ 756

Query: 676 VTGREIVVRDASRFHHFKDGMCSCGDYW 703
           VT REIVV DA  FHHF+DG CSC DYW
Sbjct: 757 VTKREIVVGDAKVFHHFRDGCCSCRDYW 784



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 154/302 (50%), Gaps = 21/302 (6%)

Query: 159 TGFEP-----DLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213
           T F+P     DL +  R L   V  G+M +A  +F++M   +    N+II G  ++G + 
Sbjct: 48  TSFKPLARPNDLNI-TRDLCGFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQ 106

Query: 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273
           EA   +  +  E     + TF  +I+A   L  + VG+++H   +K+GF  +V+V   LI
Sbjct: 107 EAIDFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLI 166

Query: 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333
           DMY K G IE A+ VFDEM  +  V WN++++GY + G    +L  + EM   G K D F
Sbjct: 167 DMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRF 226

Query: 334 TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM 393
                +  C+    L    + H  ++R    LDI+  ++L+D Y K G+++ A  VF+++
Sbjct: 227 GMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRI 286

Query: 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453
             KN+++WNA+I G     +               + P+ +T + +L +CS+SG    G 
Sbjct: 287 YSKNIVAWNAMIGGMQEDDK---------------VIPDVITMINLLPSCSQSGALLEGK 331

Query: 454 EI 455
            I
Sbjct: 332 SI 333



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 145/278 (52%), Gaps = 2/278 (0%)

Query: 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN 195
           L+ +C    ++ E K +  + +   F P L +   ++ M+ +CG +  A  +F++M E+N
Sbjct: 317 LLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVFNQMNEKN 376

Query: 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255
           +VS N ++A  + +  Y EA  +F  +  E     + T A+++ A A L   S GKQ+HS
Sbjct: 377 MVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEGKQIHS 436

Query: 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315
             +K+G G N F+S A++ MY+KCG ++ A+  FD M  K  V WNT+I  YA+HG+   
Sbjct: 437 YIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIHGFGRT 496

Query: 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL-VRHGFGLDIVANSALV 374
           ++  + EMR  G K +  TF  ++  C+    ++        + V +G    I     ++
Sbjct: 497 SIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEHYGCML 556

Query: 375 DFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNH 411
           D   + G +++A+   ++M L      W +L+A   NH
Sbjct: 557 DLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNH 594


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 203/592 (34%), Positives = 331/592 (55%), Gaps = 35/592 (5%)

Query: 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHV--RCGMMIDARRLFDEMPERNLVSCNMIIA 204
           R++K + ++ML T    D++  +R++   +     ++  A R+  ++   NL   N +I 
Sbjct: 31  RDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALIR 90

Query: 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD 264
           G   S +   +F  ++          + T   +++A A LE   +G Q H  A+K GF  
Sbjct: 91  GCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQ 150

Query: 265 NVFVSCALIDMYS-------------------------------KCGSIEDAQGVFDEMS 293
           + +V  +L+ MY+                               +CG  + A+ +FD M 
Sbjct: 151 DFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMP 210

Query: 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353
           E+  V W+T+I+GYA +   E+A++ +  ++  GV  +      +I  C  L +L   ++
Sbjct: 211 ERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEK 270

Query: 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGR 413
           AH  ++R+   L+++  +A+VD Y++ G +E A  VF+++  K+V+ W ALIAG   HG 
Sbjct: 271 AHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGY 330

Query: 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473
            E+A+  F +M   G  P  +TF AVL+ACS +G+ ERG EIF+SM RDH ++PR  HY 
Sbjct: 331 AEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYG 390

Query: 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533
           CM++LLGR G L +A   +   P K    +W ALL ACR++ N+E+G+   + L  M+PE
Sbjct: 391 CMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPE 450

Query: 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQ 593
              +YV+L NIY  + K K+   + + ++ KG+R  P  S IE+  + H F  GD++H +
Sbjct: 451 YSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPE 510

Query: 594 TKEIYRKVDRMML-EISKHGYVPEEKTLLPDVDEQEQR-VLSYHSEKLAVAFGLINTSDW 651
            ++I R  + ++L +I   GYV      + D+DE+E+   L  HSEKLA+A+G++     
Sbjct: 511 IEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYGIMKIRAP 570

Query: 652 TPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703
           TP++IV++ R+C DCH A KLI+ V   E++VRD +RFHHFK+G CSC DYW
Sbjct: 571 TPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDYW 622



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 162/368 (44%), Gaps = 35/368 (9%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHV--------------- 176
           T+  L+ AC  L +     +     +  GFE D Y++N ++ M+                
Sbjct: 119 THPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRM 178

Query: 177 ----------------RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
                           RCG    AR LFD MPERNLV+ + +I+G   +  + +A   F 
Sbjct: 179 CRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFE 238

Query: 221 DLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280
            L  E           +I + A L  +++G++ H   ++     N+ +  A++DMY++CG
Sbjct: 239 ALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCG 298

Query: 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340
           ++E A  VF+++ EK  + W  +IAG A+HGY+E+AL  + EM   G      TF+ ++ 
Sbjct: 299 NVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLT 358

Query: 341 ICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK-NV 398
            C+    +E   +    + R HG    +     +VD   + G++  A     KM  K N 
Sbjct: 359 ACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNA 418

Query: 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458
             W AL+     H +  E  E   ++LL  M+P +     +LS         +   + + 
Sbjct: 419 PIWRALLGACRIH-KNVEVGERVGKILLE-MQPEYSGHYVLLSNIYARANKWKDVTVMRQ 476

Query: 459 MSRDHKIK 466
           M +D  ++
Sbjct: 477 MMKDKGVR 484


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  364 bits (935), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 181/552 (32%), Positives = 321/552 (58%), Gaps = 2/552 (0%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           TY  +++ C  + +I+E K++ ++++   +  +  + N +L ++ +CGMM +A  +F+ +
Sbjct: 216 TYSTMLAVCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESL 275

Query: 192 PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251
            +RN++S    I G    GD+ +A   F  + E   +    TF+ ++ +   ++    G+
Sbjct: 276 RQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGR 335

Query: 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYALH 310
             H+  +K G    VFV  A+IDMYS  G +++A+  F +M    + V WN +IAGY L+
Sbjct: 336 MFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLN 395

Query: 311 GYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVAN 370
              E+A++ +  M    V  + FT+S I + C+   SL    Q H+ L++     ++   
Sbjct: 396 EKIEKAMEAFCRMVKEDVACNEFTYSNIFKACSSFPSLATTVQIHSRLIKSNVESNLHVA 455

Query: 371 SALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430
           S+L++ Y++ G +E+A  VF ++   +V+SWN++I  Y  +G   +A+ L  +M+  G +
Sbjct: 456 SSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNK 515

Query: 431 PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490
           P   TFL VLSACS SGL + G E F+SM +D+ I+P   H +CM+++LGR G L+ A  
Sbjct: 516 PTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHCSCMVDILGRAGQLENALD 575

Query: 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550
            I+    K T ++W  LL ACR N NL++ ++ AEK+  +EP   + YV L N+Y   G+
Sbjct: 576 FIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEPNDATVYVTLSNMYAEVGR 635

Query: 551 LKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610
             +A    R + +K +   P CSWIEV  + + F S D++H +  ++Y K+ +++ +I  
Sbjct: 636 WADAENQRRLMEQKEISKEPGCSWIEVNNKMYKFFSHDKAHPEMPKVYEKLKQLVRQIQD 695

Query: 611 HGYVPEEKTLL-PDVDEQEQRVLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNA 669
            GY P   T+L P+  + +++++ YHSEKLAV FGL++     P++++++ R+C DC++ 
Sbjct: 696 IGYSPPTTTVLHPESRQPKEQLILYHSEKLAVCFGLLSLPPGKPIRVLKNLRVCLDCYST 755

Query: 670 IKLIAMVTGREI 681
           +K I+ +T R I
Sbjct: 756 MKYISRITDRYI 767



 Score =  268 bits (684), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 157/471 (33%), Positives = 247/471 (52%), Gaps = 40/471 (8%)

Query: 110  YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169
            Y EAL  F  ++ EG          +++ AC  L   R  + + + +L   FE D Y+ +
Sbjct: 885  YEEALSAFSEMQKEG-LRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIIS 943

Query: 170  RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229
             ++ M+ +CG +  A R+FD + +++LV  N +++G    G   EA    LBL ++    
Sbjct: 944  ALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYAQHGFVHEA----LBLVQKMQQA 999

Query: 230  GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289
            G +                                NV     LI  +S+ G       VF
Sbjct: 1000 GVKP-------------------------------NVVSWNTLIAGFSQVGDKSMVSEVF 1028

Query: 290  DEMS----EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345
              M+    E   V W ++I+G+  + ++ E  D + EM D G      T S ++  CT +
Sbjct: 1029 RLMTANGVEPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNV 1088

Query: 346  ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI 405
            A+L H K+ H   +  G   D+   SALVD Y+K G I +A+ +F  M  +N ++WN+LI
Sbjct: 1089 ANLRHGKEIHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLI 1148

Query: 406  AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465
             GY NHG   EA+ELF QM  +  + +H+TF AVL+ACS +G+ E G  +F  M   ++I
Sbjct: 1149 FGYANHGYCNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRI 1208

Query: 466  KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAE 525
            +PR  HYACM++LLGR G L EA+ LI+  P +  K +W ALL ACR +GN+EL + AAE
Sbjct: 1209 EPRLEHYACMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAE 1268

Query: 526  KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIE 576
             L+ +EPE   + ++L N+Y  +G+   AA++ + ++++     P CSWIE
Sbjct: 1269 HLFELEPESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWIE 1319



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 121/457 (26%), Positives = 227/457 (49%), Gaps = 31/457 (6%)

Query: 120 LEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG 179
           +EF GGF      + AL S C     +   +R   +++  G   D ++   ++ M+ +CG
Sbjct: 104 VEFGGGFPHRQYVFSAL-SFCGREGCVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCG 162

Query: 180 MMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIR 239
            +  A R++D+M   +  +CN +I+    +G +++AF +F+ +    +     T++TM+ 
Sbjct: 163 EVDSAVRVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLA 222

Query: 240 ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299
               +  I  GKQLH+  +KM +     V  AL+ +YSKCG +E+A+ VF+ + ++  + 
Sbjct: 223 VCGTISAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIIS 282

Query: 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359
           W   I G+  HG  ++AL  +  MR+SG++ + FTFS+++  C  +      +  H  ++
Sbjct: 283 WTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVI 342

Query: 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM-LCKNVISWNALIAGYGNHGRGEEAV 418
           + G    +   +A++D YS  G +++A   F +M    + +SWNALIAGY  + + E+A+
Sbjct: 343 KKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAM 402

Query: 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR--------AM 470
           E F +M+   +  N  T+  +  ACS           F S++   +I  R         +
Sbjct: 403 EAFCRMVKEDVACNEFTYSNIFKACSS----------FPSLATTVQIHSRLIKSNVESNL 452

Query: 471 HYA-CMIELLGREGLLDEA---FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526
           H A  +IE   + G L+ A   F  I  A   +    W +++ A   NG+     F   K
Sbjct: 453 HVASSLIEAYTQCGSLENAVQVFTQISDADVVS----WNSIIKAYSQNGDPWKAIFLLRK 508

Query: 527 LY--GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
           +   G +P   + ++ +L+  + SG ++E  E  +++
Sbjct: 509 MIEEGNKPTSXT-FLTVLSACSHSGLVQEGQEFFKSM 544



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 114/478 (23%), Positives = 213/478 (44%), Gaps = 80/478 (16%)

Query: 126  FDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDAR 185
            F   S TY   I      R++   + + ++++  G     Y   +++  +  CG + +AR
Sbjct: 799  FQSSSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNAR 858

Query: 186  RLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLE 245
            +LFD++P  N+    ++       G Y EA   F ++ +E          ++++A   L 
Sbjct: 859  KLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLS 918

Query: 246  LISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIA 305
                G+ +H+  LK  F  + ++  ALI MYSKCG +E A  VFD + +K  V  N +++
Sbjct: 919  DRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVS 978

Query: 306  GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365
            GYA HG+  EALBL  +M+ +GVK +  +++ +I                        G 
Sbjct: 979  GYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIA-----------------------GF 1015

Query: 366  DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQML 425
              V + ++V   S+  R+  A  V       +V+SW ++I+G+  +    E  + F++ML
Sbjct: 1016 SQVGDKSMV---SEVFRLMTANGVE-----PDVVSWTSVISGFVQNFHNHEGFDAFKEML 1067

Query: 426  LNGMRPNHVTFLAVLSACS-----RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480
              G  P+ VT  ++L AC+     R G    G+ +   + +D  ++      + ++++  
Sbjct: 1068 DQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVYVR------SALVDMYA 1121

Query: 481  REGLLDEAFALIRGAPFKTTKN----------------------------------MWAA 506
            + G + EA  L    P + T                                     + A
Sbjct: 1122 KCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESDTKLDHLTFTA 1181

Query: 507  LLTACRVNGNLELGKFAAEKL---YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561
            +L AC   G +ELG+    K+   Y +EP +L +Y  ++++   +GKL EA ++I+ +
Sbjct: 1182 VLNACSHAGMVELGESLFXKMQEKYRIEP-RLEHYACMVDLLGRAGKLSEAYDLIKAM 1238



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 101/220 (45%), Gaps = 3/220 (1%)

Query: 99   SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLS 158
            S I   V N    E  + F+ +  + GF   S T  +L+ AC  + ++R  K +  Y + 
Sbjct: 1045 SVISGFVQNFHNHEGFDAFKEM-LDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMV 1103

Query: 159  TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL 218
             G E D+Y+R+ ++ M+ +CG + +A+ LF  MPERN V+ N +I G  + G   EA  L
Sbjct: 1104 IGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIEL 1163

Query: 219  FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL-HSCALKMGFGDNVFVSCALIDMYS 277
            F  + E  +     TF  ++ A +   ++ +G+ L      K      +     ++D+  
Sbjct: 1164 FNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLG 1223

Query: 278  KCGSIEDAQGVFDEMS-EKTTVGWNTIIAGYALHGYSEEA 316
            + G + +A  +   M  E     W  ++     HG  E A
Sbjct: 1224 RAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELA 1263


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  364 bits (934), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 185/549 (33%), Positives = 319/549 (58%), Gaps = 2/549 (0%)

Query: 105 VLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD 164
           V N++  EAL+ F++L  + G      +     SAC  ++   + +++ S  + +    +
Sbjct: 354 VRNEKGFEALQFFQLL-LKSGLGFNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSN 412

Query: 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224
           + + N +L M+ +C  + +A  +FDEM  R+ VS N +IA    +G+  E   LF  +  
Sbjct: 413 ICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASMLR 472

Query: 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284
              +    T+ ++++A +  + ++ G ++H+  +K G G + FV  ALIDMY KCG IE+
Sbjct: 473 LRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEE 532

Query: 285 AQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344
           A+ + D + ++T V WN IIAG+ L  +SE+A   +YEM    VK D+FT+++++  C  
Sbjct: 533 AKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACAN 592

Query: 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNAL 404
           LAS+   KQ H  +++     D+   S LVD YSK G ++D+  VF+K   K+ ++WNA+
Sbjct: 593 LASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTWNAM 652

Query: 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464
           I GY  HG GEEA+  FE+M L  +RPNH TF+++L AC+  G  ++G   F +M  ++ 
Sbjct: 653 ICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLTEYG 712

Query: 465 IKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524
           ++P+  HY+CMI+++GR G + EA  LI+  PF+    +W  LL+ C+++GN+E+ + A 
Sbjct: 713 LEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSICKIHGNIEIAEKAT 772

Query: 525 EKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVF 584
             +  +EPE  S  ++L NIY  +G   + +E+ + +R   L+  P CSWIEVK + H F
Sbjct: 773 NAILQLEPEDSSACILLSNIYADAGMWGKVSEMRKMMRYNKLKKEPGCSWIEVKDEVHAF 832

Query: 585 LSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQ-EQRVLSYHSEKLAVAF 643
           L G+++H + +EIY+ +  ++ E+   GY+P+   L+ +  E+ EQ+     + +     
Sbjct: 833 LVGNKTHPRYEEIYKILSVLLDEMKWIGYIPDIDFLIDEESEEYEQKASEMENVESHKKL 892

Query: 644 GLINTSDWT 652
            L N  +W 
Sbjct: 893 RLQNEQEWV 901



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 130/496 (26%), Positives = 241/496 (48%), Gaps = 48/496 (9%)

Query: 132 TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEM 191
           T+  +I  C    S++  K+  + M+ +GF PD+Y+ N ++ M++RC  +  A ++F++M
Sbjct: 45  TFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEKM 104

Query: 192 -------------------------------PERNLVSCNMIIAGMIDSGDYLEAFLLFL 220
                                          P+R++VS N +++G + +G+  ++  +FL
Sbjct: 105 SQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVFL 164

Query: 221 DLW-EEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279
           D+   E       TFA +++A + LE   +G Q+H   ++MGF  +V    AL+DMY+KC
Sbjct: 165 DMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKC 224

Query: 280 GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339
             ++D+  +F E+  K  V W+ IIAG   +      L+L+ EM+  G+ +    ++ + 
Sbjct: 225 KRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASVF 284

Query: 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI 399
           R C  L++L+   Q HA  ++  FG DI   +A +D Y+K G + DA+ +F+ +   ++ 
Sbjct: 285 RSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQ 344

Query: 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459
            +NA+I G   + +G EA++ F+ +L +G+  N ++     SAC+       G ++  S+
Sbjct: 345 CYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLDGRQL-HSL 403

Query: 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE- 518
           S    ++        ++++ G+   L EA  +      +   + W A++ A   NGN E 
Sbjct: 404 SVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVS-WNAVIAAHEQNGNEEE 462

Query: 519 -LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL----------- 566
            L  FA+     MEP++ + Y  +L   +S   L    E+   + + GL           
Sbjct: 463 TLNLFASMLRLRMEPDQFT-YGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALI 521

Query: 567 RMLPACSWIEVKKQPH 582
            M   C  IE  K+ H
Sbjct: 522 DMYCKCGMIEEAKKIH 537



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/359 (29%), Positives = 186/359 (51%), Gaps = 4/359 (1%)

Query: 99  SQIEKLVLNKRYREALELFEIL--EFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYM 156
           S +   + N   R+++++F  +    E GFD   +T+  ++ AC  L       +V   +
Sbjct: 145 SMLSGFLQNGECRKSIDVFLDMGRSEEVGFD--QTTFAVVLKACSVLEDGGLGIQVHGLI 202

Query: 157 LSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAF 216
           +  GF  D+   + +L M+ +C  + D+ ++F E+P +N V  + IIAG + + +++   
Sbjct: 203 VRMGFYKDVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGL 262

Query: 217 LLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276
            LF ++ +         +A++ R+ AGL  + VG QLH+ ALK  FG ++ V  A +DMY
Sbjct: 263 ELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMY 322

Query: 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336
           +KCGS+ DAQ +F+ + + +   +N II G   +    EAL  +  +  SG+  +  + S
Sbjct: 323 AKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLS 382

Query: 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396
                C  +      +Q H+  V+     +I   ++++D Y K   + +A  +FD+M  +
Sbjct: 383 GAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERR 442

Query: 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455
           + +SWNA+IA +  +G  EE + LF  ML   M P+  T+ +VL ACS       G EI
Sbjct: 443 DAVSWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEI 501



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 128/250 (51%), Gaps = 34/250 (13%)

Query: 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291
           RTF+ +I+  +    +  GKQ H+  +  GF  +V++S  L+ MY +C  +  A  VF++
Sbjct: 44  RTFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYKVFEK 103

Query: 292 MSEKTTVGWNTIIAGYA-------------------------------LHGYSEEALDLY 320
           MS++  + +NT+I+GYA                                +G   +++D++
Sbjct: 104 MSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKSIDVF 163

Query: 321 YEM-RDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379
            +M R   V  D  TF+++++ C+ L       Q H  +VR GF  D+V  SAL+D Y+K
Sbjct: 164 LDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAK 223

Query: 380 WGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439
             R++D+  +F ++  KN + W+A+IAG   +      +ELF++M   G+  +   + +V
Sbjct: 224 CKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSIYASV 283

Query: 440 LSACSRSGLS 449
             +C  +GLS
Sbjct: 284 FRSC--AGLS 291


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.137    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,675,566,772
Number of Sequences: 23463169
Number of extensions: 433101164
Number of successful extensions: 1123171
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9998
Number of HSP's successfully gapped in prelim test: 2325
Number of HSP's that attempted gapping in prelim test: 944514
Number of HSP's gapped (non-prelim): 59845
length of query: 703
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 553
effective length of database: 8,839,720,017
effective search space: 4888365169401
effective search space used: 4888365169401
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 81 (35.8 bits)