Query 005305
Match_columns 703
No_of_seqs 872 out of 4849
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 21:22:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005305.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005305hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-128 4E-133 1125.8 72.9 669 11-701 188-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 5E-126 1E-130 1080.1 73.9 611 93-703 85-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1E-79 2.2E-84 716.6 58.0 614 57-698 119-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.3E-66 2.9E-71 594.6 52.6 502 58-570 369-915 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.4E-62 2.9E-67 559.6 44.7 434 12-468 125-562 (697)
6 PLN03218 maturation of RBCL 1; 100.0 3.3E-61 7.1E-66 550.4 55.2 508 92-619 367-917 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-28 3.7E-33 291.4 53.2 451 104-566 407-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-28 4.1E-33 291.0 53.2 489 60-562 398-898 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 6E-31 1.3E-35 221.6 8.6 105 571-693 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 1.6E-20 3.4E-25 225.0 49.7 492 58-564 61-666 (1157)
11 PRK11447 cellulose synthase su 99.9 2.8E-19 6.1E-24 214.3 52.2 343 207-562 362-738 (1157)
12 KOG4626 O-linked N-acetylgluco 99.9 1.6E-19 3.5E-24 183.5 34.7 457 82-555 38-510 (966)
13 PRK09782 bacteriophage N4 rece 99.9 4.1E-17 8.9E-22 187.2 49.1 470 71-565 56-707 (987)
14 KOG4626 O-linked N-acetylgluco 99.8 2.2E-18 4.8E-23 175.4 32.2 422 133-567 51-488 (966)
15 PRK09782 bacteriophage N4 rece 99.8 6.3E-17 1.4E-21 185.6 48.2 445 104-565 54-673 (987)
16 TIGR00990 3a0801s09 mitochondr 99.8 7.7E-17 1.7E-21 181.6 44.8 416 135-564 132-571 (615)
17 PRK11788 tetratricopeptide rep 99.8 2.6E-18 5.5E-23 183.5 29.2 305 104-449 45-363 (389)
18 PRK11788 tetratricopeptide rep 99.8 1.1E-17 2.3E-22 178.8 30.4 220 269-494 110-343 (389)
19 PRK10049 pgaA outer membrane p 99.8 1.6E-15 3.4E-20 174.2 47.1 401 131-562 16-454 (765)
20 PRK15174 Vi polysaccharide exp 99.8 6.1E-16 1.3E-20 173.8 40.8 351 177-535 17-386 (656)
21 PRK10049 pgaA outer membrane p 99.8 2.3E-15 5.1E-20 172.7 42.3 371 163-565 13-423 (765)
22 TIGR00990 3a0801s09 mitochondr 99.8 6.1E-15 1.3E-19 166.2 41.8 434 99-562 131-595 (615)
23 PRK14574 hmsH outer membrane p 99.8 3.2E-14 6.9E-19 160.3 46.5 429 98-536 38-519 (822)
24 PRK15174 Vi polysaccharide exp 99.8 5.4E-15 1.2E-19 166.1 39.9 321 100-427 47-381 (656)
25 PRK14574 hmsH outer membrane p 99.7 1.6E-13 3.4E-18 154.8 45.0 425 133-565 38-514 (822)
26 KOG2002 TPR-containing nuclear 99.7 4.3E-13 9.2E-18 144.6 40.2 479 75-566 146-677 (1018)
27 KOG2002 TPR-containing nuclear 99.7 1.3E-13 2.9E-18 148.4 34.1 482 68-565 174-746 (1018)
28 KOG4422 Uncharacterized conser 99.7 1.8E-12 4E-17 127.4 38.5 319 95-430 116-465 (625)
29 KOG0495 HAT repeat protein [RN 99.6 2.1E-10 4.6E-15 118.7 42.8 462 94-577 379-891 (913)
30 KOG2003 TPR repeat-containing 99.6 2.1E-11 4.5E-16 120.6 33.9 439 104-550 211-709 (840)
31 KOG4422 Uncharacterized conser 99.6 2.8E-11 6.2E-16 119.2 34.0 245 82-362 197-463 (625)
32 KOG2076 RNA polymerase III tra 99.5 6.1E-11 1.3E-15 127.5 32.1 329 210-574 153-522 (895)
33 KOG0547 Translocase of outer m 99.5 1.4E-10 3E-15 116.5 31.5 415 101-562 121-564 (606)
34 KOG2003 TPR repeat-containing 99.5 5.9E-11 1.3E-15 117.5 28.1 199 279-483 503-708 (840)
35 PF13429 TPR_15: Tetratricopep 99.5 1.1E-13 2.5E-18 140.0 9.7 255 304-562 15-275 (280)
36 KOG1915 Cell cycle control pro 99.5 1.7E-09 3.7E-14 108.2 38.2 479 73-563 87-624 (677)
37 KOG0495 HAT repeat protein [RN 99.5 5.5E-09 1.2E-13 108.5 42.9 392 142-544 388-796 (913)
38 PRK10747 putative protoheme IX 99.4 1.1E-10 2.4E-15 123.8 30.5 284 209-529 97-389 (398)
39 KOG2076 RNA polymerase III tra 99.4 2.3E-09 4.9E-14 115.7 39.1 321 68-396 149-512 (895)
40 TIGR00540 hemY_coli hemY prote 99.4 3.3E-10 7.2E-15 120.9 29.8 289 208-528 96-397 (409)
41 PRK10747 putative protoheme IX 99.4 4.3E-10 9.3E-15 119.4 29.2 284 106-426 96-389 (398)
42 TIGR00540 hemY_coli hemY prote 99.4 1.5E-09 3.3E-14 115.8 33.5 277 279-562 97-397 (409)
43 PF13429 TPR_15: Tetratricopep 99.4 5.7E-12 1.2E-16 127.6 12.6 252 104-360 18-276 (280)
44 KOG1126 DNA-binding cell divis 99.3 1.1E-10 2.4E-15 122.0 21.5 159 397-562 420-584 (638)
45 KOG1915 Cell cycle control pro 99.3 2.4E-08 5.3E-13 100.1 36.2 382 177-566 85-502 (677)
46 KOG4318 Bicoid mRNA stability 99.3 2.3E-09 5E-14 114.9 30.9 455 92-574 22-603 (1088)
47 KOG1155 Anaphase-promoting com 99.3 2.9E-08 6.2E-13 99.6 34.7 326 229-563 162-494 (559)
48 KOG1126 DNA-binding cell divis 99.3 3.5E-10 7.6E-15 118.3 22.0 275 281-565 334-621 (638)
49 COG2956 Predicted N-acetylgluc 99.3 2.1E-09 4.6E-14 102.8 24.5 270 98-377 39-325 (389)
50 KOG1155 Anaphase-promoting com 99.3 1.6E-07 3.5E-12 94.3 38.5 359 161-533 160-539 (559)
51 COG2956 Predicted N-acetylgluc 99.2 1.2E-08 2.6E-13 97.7 27.3 268 209-512 48-326 (389)
52 PF13041 PPR_2: PPR repeat fam 99.2 2E-11 4.4E-16 87.0 6.6 50 396-445 1-50 (50)
53 TIGR02521 type_IV_pilW type IV 99.2 2.3E-09 5E-14 105.0 23.7 197 366-563 30-231 (234)
54 KOG4162 Predicted calmodulin-b 99.2 7.8E-08 1.7E-12 102.4 35.8 409 160-575 318-793 (799)
55 COG3071 HemY Uncharacterized e 99.2 2E-08 4.4E-13 99.2 29.0 281 209-528 97-388 (400)
56 PF13041 PPR_2: PPR repeat fam 99.2 3.1E-11 6.7E-16 86.1 6.3 50 194-243 1-50 (50)
57 KOG2376 Signal recognition par 99.2 1.6E-07 3.4E-12 97.2 35.1 432 104-561 22-517 (652)
58 KOG2047 mRNA splicing factor [ 99.2 1.9E-06 4.2E-11 90.0 42.2 472 60-551 103-710 (835)
59 KOG4318 Bicoid mRNA stability 99.2 7.3E-10 1.6E-14 118.7 17.9 265 318-622 11-276 (1088)
60 KOG1173 Anaphase-promoting com 99.2 1.7E-07 3.6E-12 96.6 33.8 258 300-562 247-516 (611)
61 COG3071 HemY Uncharacterized e 99.1 9.7E-08 2.1E-12 94.5 27.9 291 107-432 97-395 (400)
62 KOG1840 Kinesin light chain [C 99.1 8.7E-08 1.9E-12 101.6 27.6 230 333-562 200-477 (508)
63 KOG3785 Uncharacterized conser 99.1 2.5E-06 5.3E-11 82.9 34.3 443 102-566 29-492 (557)
64 PRK12370 invasion protein regu 99.0 5.8E-08 1.3E-12 107.8 25.5 260 296-565 255-536 (553)
65 KOG1129 TPR repeat-containing 99.0 1.9E-08 4.1E-13 96.3 17.8 231 301-566 227-460 (478)
66 PRK11189 lipoprotein NlpI; Pro 99.0 5.7E-08 1.2E-12 98.7 22.3 211 346-565 40-266 (296)
67 TIGR02521 type_IV_pilW type IV 99.0 8E-08 1.7E-12 94.0 22.8 191 95-290 31-227 (234)
68 KOG2047 mRNA splicing factor [ 99.0 2.2E-05 4.7E-10 82.4 40.0 426 131-562 103-613 (835)
69 PRK12370 invasion protein regu 99.0 7.1E-08 1.5E-12 107.1 23.8 210 110-325 277-501 (553)
70 KOG1174 Anaphase-promoting com 99.0 6.2E-06 1.4E-10 81.9 33.4 269 261-535 227-505 (564)
71 KOG1173 Anaphase-promoting com 98.9 2.6E-06 5.7E-11 88.0 30.7 272 206-514 254-535 (611)
72 PF12569 NARP1: NMDA receptor- 98.9 4.8E-06 1E-10 89.6 34.2 296 104-426 14-333 (517)
73 KOG1840 Kinesin light chain [C 98.9 3.1E-07 6.7E-12 97.5 24.3 161 233-393 201-393 (508)
74 KOG0547 Translocase of outer m 98.9 1.4E-06 3.1E-11 88.2 25.8 80 66-151 122-204 (606)
75 KOG3785 Uncharacterized conser 98.9 3.7E-06 8E-11 81.7 27.2 405 137-562 29-455 (557)
76 PRK11189 lipoprotein NlpI; Pro 98.8 1.6E-06 3.4E-11 88.2 25.7 231 311-549 40-285 (296)
77 KOG1156 N-terminal acetyltrans 98.8 4.9E-05 1.1E-09 80.1 36.1 95 472-566 374-470 (700)
78 KOG0985 Vesicle coat protein c 98.8 8.1E-06 1.8E-10 89.2 30.9 144 397-561 1103-1246(1666)
79 KOG1156 N-terminal acetyltrans 98.8 3.3E-05 7.3E-10 81.3 33.3 428 82-524 27-505 (700)
80 COG3063 PilF Tfp pilus assembl 98.8 5.5E-07 1.2E-11 82.8 17.5 162 401-566 38-204 (250)
81 KOG1174 Anaphase-promoting com 98.8 6.8E-05 1.5E-09 74.8 32.1 384 166-563 98-499 (564)
82 KOG1129 TPR repeat-containing 98.7 3.4E-07 7.3E-12 87.9 15.4 216 104-324 233-456 (478)
83 KOG3616 Selective LIM binding 98.7 5.8E-05 1.3E-09 80.0 33.1 352 169-564 619-1024(1636)
84 KOG4162 Predicted calmodulin-b 98.7 0.00021 4.7E-09 76.9 35.9 428 97-536 285-789 (799)
85 KOG0624 dsRNA-activated protei 98.7 5.6E-05 1.2E-09 73.5 28.0 195 342-563 165-369 (504)
86 cd05804 StaR_like StaR_like; a 98.6 5.5E-05 1.2E-09 79.6 30.6 195 371-565 118-337 (355)
87 KOG0985 Vesicle coat protein c 98.6 0.0002 4.3E-09 78.9 34.1 445 58-561 871-1367(1666)
88 KOG1125 TPR repeat-containing 98.6 2.3E-06 4.9E-11 88.8 18.3 218 343-563 296-526 (579)
89 PF12569 NARP1: NMDA receptor- 98.6 4.4E-05 9.6E-10 82.3 29.0 88 373-461 200-290 (517)
90 COG3063 PilF Tfp pilus assembl 98.6 2E-05 4.3E-10 72.8 21.8 190 342-534 45-240 (250)
91 cd05804 StaR_like StaR_like; a 98.6 0.00017 3.7E-09 75.8 31.6 150 242-393 54-212 (355)
92 KOG1127 TPR repeat-containing 98.5 9.7E-05 2.1E-09 81.4 28.9 174 384-562 800-994 (1238)
93 PF04733 Coatomer_E: Coatomer 98.5 2.1E-06 4.5E-11 86.1 15.3 244 278-563 13-264 (290)
94 PF04733 Coatomer_E: Coatomer 98.5 1.6E-05 3.5E-10 79.7 21.0 245 239-495 9-262 (290)
95 KOG0548 Molecular co-chaperone 98.5 6.6E-05 1.4E-09 77.6 24.8 217 335-565 227-456 (539)
96 KOG3616 Selective LIM binding 98.5 8.8E-05 1.9E-09 78.7 26.1 195 339-560 739-933 (1636)
97 PRK04841 transcriptional regul 98.5 0.00016 3.4E-09 86.4 32.6 324 242-565 385-761 (903)
98 KOG2376 Signal recognition par 98.5 0.0026 5.7E-08 66.8 36.1 409 136-564 18-487 (652)
99 PF12854 PPR_1: PPR repeat 98.5 1.8E-07 3.8E-12 59.9 3.8 33 160-192 2-34 (34)
100 PRK04841 transcriptional regul 98.4 0.00075 1.6E-08 80.7 36.9 327 206-533 384-763 (903)
101 KOG1070 rRNA processing protei 98.4 1.9E-05 4.2E-10 89.5 21.1 198 366-567 1457-1666(1710)
102 KOG3617 WD40 and TPR repeat-co 98.4 0.0014 3.1E-08 70.9 33.5 139 66-221 735-883 (1416)
103 KOG4340 Uncharacterized conser 98.4 5.1E-05 1.1E-09 72.3 20.3 298 244-563 125-442 (459)
104 KOG1127 TPR repeat-containing 98.4 0.00013 2.7E-09 80.5 25.8 378 166-560 493-909 (1238)
105 PF12854 PPR_1: PPR repeat 98.4 4.6E-07 1E-11 58.0 4.5 33 464-496 2-34 (34)
106 TIGR03302 OM_YfiO outer membra 98.3 4.5E-05 9.8E-10 75.0 19.0 179 366-564 32-232 (235)
107 KOG3617 WD40 and TPR repeat-co 98.3 0.0021 4.6E-08 69.6 31.8 404 94-560 725-1170(1416)
108 KOG4340 Uncharacterized conser 98.3 0.0011 2.3E-08 63.6 26.3 274 70-357 21-335 (459)
109 PLN02789 farnesyltranstransfer 98.3 0.00023 5E-09 72.4 23.6 164 382-548 87-268 (320)
110 KOG1070 rRNA processing protei 98.3 0.00017 3.8E-09 82.1 23.9 217 231-448 1458-1686(1710)
111 KOG0548 Molecular co-chaperone 98.3 0.002 4.4E-08 67.0 29.2 234 300-547 227-472 (539)
112 PRK10370 formate-dependent nit 98.3 6.6E-05 1.4E-09 71.1 17.3 118 446-565 52-174 (198)
113 PRK15359 type III secretion sy 98.2 3.4E-05 7.3E-10 69.0 14.3 121 419-545 14-136 (144)
114 KOG1914 mRNA cleavage and poly 98.2 0.0097 2.1E-07 62.0 32.1 74 58-138 19-94 (656)
115 KOG1125 TPR repeat-containing 98.2 9.9E-05 2.2E-09 77.0 18.0 216 241-461 295-526 (579)
116 PRK15359 type III secretion sy 98.2 3.5E-05 7.5E-10 69.0 12.9 107 454-565 14-122 (144)
117 PRK15363 pathogenicity island 98.1 5.9E-05 1.3E-09 66.5 13.0 120 468-610 34-155 (157)
118 TIGR00756 PPR pentatricopeptid 98.1 4.3E-06 9.3E-11 54.2 4.6 34 399-432 1-34 (35)
119 KOG1128 Uncharacterized conser 98.1 7.5E-05 1.6E-09 79.8 16.2 216 262-495 394-613 (777)
120 KOG1128 Uncharacterized conser 98.1 9.2E-05 2E-09 79.2 16.4 189 362-565 393-583 (777)
121 KOG2053 Mitochondrial inherita 98.1 0.021 4.5E-07 63.2 33.7 213 73-293 23-253 (932)
122 COG5010 TadD Flp pilus assembl 98.1 0.00022 4.7E-09 67.5 16.5 135 429-565 62-198 (257)
123 TIGR00756 PPR pentatricopeptid 98.1 7.4E-06 1.6E-10 53.1 4.5 35 298-332 1-35 (35)
124 TIGR03302 OM_YfiO outer membra 98.0 0.00035 7.5E-09 68.6 18.1 181 331-532 32-234 (235)
125 PRK15179 Vi polysaccharide bio 98.0 0.00044 9.6E-09 77.6 20.7 140 397-540 85-227 (694)
126 PRK10370 formate-dependent nit 98.0 0.00055 1.2E-08 64.8 18.3 154 374-538 23-181 (198)
127 KOG1914 mRNA cleavage and poly 98.0 0.029 6.3E-07 58.6 38.9 439 94-561 19-536 (656)
128 KOG0624 dsRNA-activated protei 98.0 0.005 1.1E-07 60.3 24.4 337 173-565 46-395 (504)
129 PLN02789 farnesyltranstransfer 98.0 0.0017 3.8E-08 66.1 21.8 193 97-294 39-249 (320)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0003 6.5E-09 73.1 16.4 124 434-562 170-295 (395)
131 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.6E-10 51.0 4.5 34 398-431 1-34 (34)
132 COG5010 TadD Flp pilus assembl 97.9 0.0015 3.3E-08 62.0 18.3 126 365-494 98-227 (257)
133 TIGR02552 LcrH_SycD type III s 97.9 0.00019 4.2E-09 63.5 12.0 97 469-565 17-115 (135)
134 COG4783 Putative Zn-dependent 97.9 0.0014 3E-08 67.6 19.2 135 408-564 316-454 (484)
135 PF13812 PPR_3: Pentatricopept 97.9 2.2E-05 4.8E-10 50.4 4.3 34 196-229 1-34 (34)
136 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00066 1.4E-08 70.5 16.1 128 368-499 170-298 (395)
137 PRK15179 Vi polysaccharide bio 97.8 0.0034 7.4E-08 70.6 22.6 129 363-495 82-214 (694)
138 PRK14720 transcript cleavage f 97.8 0.0059 1.3E-07 69.5 24.2 235 129-409 30-268 (906)
139 COG4783 Putative Zn-dependent 97.8 0.0035 7.5E-08 64.7 19.7 119 442-562 315-435 (484)
140 PRK14720 transcript cleavage f 97.7 0.013 2.7E-07 66.9 25.9 88 331-433 115-202 (906)
141 PF01535 PPR: PPR repeat; Int 97.7 4.9E-05 1.1E-09 47.6 3.6 31 399-429 1-31 (31)
142 PF01535 PPR: PPR repeat; Int 97.6 6.3E-05 1.4E-09 47.1 3.6 31 197-227 1-31 (31)
143 TIGR02552 LcrH_SycD type III s 97.6 0.0017 3.8E-08 57.3 13.5 113 420-536 5-120 (135)
144 KOG3081 Vesicle coat complex C 97.6 0.021 4.5E-07 54.4 20.2 147 406-562 116-269 (299)
145 cd00189 TPR Tetratricopeptide 97.5 0.00093 2E-08 54.1 10.1 92 472-563 3-96 (100)
146 KOG3060 Uncharacterized conser 97.5 0.023 4.9E-07 53.8 19.6 166 369-537 54-227 (289)
147 PF09976 TPR_21: Tetratricopep 97.5 0.0054 1.2E-07 54.9 14.9 53 507-560 91-143 (145)
148 KOG3060 Uncharacterized conser 97.4 0.01 2.2E-07 56.0 15.8 182 380-565 25-221 (289)
149 PF13432 TPR_16: Tetratricopep 97.4 0.00064 1.4E-08 51.3 6.6 59 507-565 3-61 (65)
150 PF13414 TPR_11: TPR repeat; P 97.4 0.0004 8.7E-09 53.1 5.5 64 500-563 2-66 (69)
151 KOG3081 Vesicle coat complex C 97.4 0.052 1.1E-06 51.8 20.2 45 448-494 188-232 (299)
152 PF09976 TPR_21: Tetratricopep 97.3 0.012 2.6E-07 52.7 15.7 116 411-527 24-144 (145)
153 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0027 5.8E-08 54.5 10.9 93 472-564 5-105 (119)
154 PF12895 Apc3: Anaphase-promot 97.3 0.00028 6.1E-09 56.5 4.2 77 483-560 3-83 (84)
155 COG3898 Uncharacterized membra 97.3 0.23 4.9E-06 50.1 24.6 240 310-563 133-391 (531)
156 PRK10153 DNA-binding transcrip 97.2 0.011 2.4E-07 64.4 16.8 66 500-566 419-484 (517)
157 PF04840 Vps16_C: Vps16, C-ter 97.2 0.29 6.3E-06 49.9 25.8 111 434-561 178-288 (319)
158 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0066 1.4E-07 52.0 11.8 99 439-537 8-112 (119)
159 PF05843 Suf: Suppressor of fo 97.2 0.01 2.2E-07 59.7 14.6 143 399-545 2-150 (280)
160 PRK02603 photosystem I assembl 97.2 0.0047 1E-07 57.2 11.4 81 470-550 36-121 (172)
161 CHL00033 ycf3 photosystem I as 97.2 0.0043 9.3E-08 57.2 11.1 94 468-561 34-139 (168)
162 PRK02603 photosystem I assembl 97.1 0.013 2.8E-07 54.2 13.8 131 397-550 34-166 (172)
163 KOG1538 Uncharacterized conser 97.1 0.12 2.6E-06 55.2 21.3 182 255-501 624-806 (1081)
164 PLN03088 SGT1, suppressor of 97.1 0.0036 7.7E-08 65.3 10.7 105 440-546 9-115 (356)
165 KOG0553 TPR repeat-containing 97.1 0.0059 1.3E-07 59.3 11.0 97 443-541 91-189 (304)
166 KOG0553 TPR repeat-containing 97.1 0.0019 4.1E-08 62.6 7.6 87 477-563 89-177 (304)
167 CHL00033 ycf3 photosystem I as 97.0 0.036 7.7E-07 51.1 15.5 110 398-534 35-153 (168)
168 cd00189 TPR Tetratricopeptide 97.0 0.0095 2.1E-07 47.9 10.6 90 401-494 3-93 (100)
169 PF13371 TPR_9: Tetratricopept 97.0 0.0023 5.1E-08 49.4 6.2 58 508-565 2-59 (73)
170 PF14559 TPR_19: Tetratricopep 96.9 0.00086 1.9E-08 51.1 3.2 53 512-564 2-54 (68)
171 PLN03088 SGT1, suppressor of 96.9 0.016 3.5E-07 60.4 13.6 103 405-511 9-113 (356)
172 PF04840 Vps16_C: Vps16, C-ter 96.8 0.68 1.5E-05 47.2 28.2 105 374-495 184-288 (319)
173 PF13431 TPR_17: Tetratricopep 96.8 0.0009 2E-08 42.7 2.3 33 524-556 2-34 (34)
174 PRK15331 chaperone protein Sic 96.8 0.036 7.8E-07 49.4 12.9 86 478-563 46-133 (165)
175 KOG0550 Molecular chaperone (D 96.8 0.036 7.8E-07 56.1 14.1 266 273-565 56-351 (486)
176 PF10037 MRP-S27: Mitochondria 96.8 0.021 4.5E-07 59.9 13.1 80 200-279 107-186 (429)
177 PF08579 RPM2: Mitochondrial r 96.7 0.021 4.6E-07 47.0 9.9 80 401-481 28-116 (120)
178 PF12895 Apc3: Anaphase-promot 96.7 0.0038 8.3E-08 49.8 5.8 81 411-494 2-83 (84)
179 COG4235 Cytochrome c biogenesi 96.7 0.037 8.1E-07 54.1 13.0 102 465-566 152-258 (287)
180 PF14938 SNAP: Soluble NSF att 96.6 0.19 4.1E-06 50.7 18.9 126 371-496 118-264 (282)
181 COG4700 Uncharacterized protei 96.6 0.24 5.2E-06 44.7 16.7 130 429-562 85-220 (251)
182 PRK10866 outer membrane biogen 96.6 0.19 4.2E-06 49.2 18.3 55 272-326 38-98 (243)
183 PF13432 TPR_16: Tetratricopep 96.6 0.0052 1.1E-07 46.2 5.7 61 475-535 3-65 (65)
184 PF06239 ECSIT: Evolutionarily 96.6 0.048 1E-06 50.8 12.7 105 329-448 44-153 (228)
185 PF07079 DUF1347: Protein of u 96.6 1.1 2.4E-05 46.4 34.8 423 59-506 46-530 (549)
186 PF05843 Suf: Suppressor of fo 96.6 0.03 6.4E-07 56.3 12.7 126 299-426 3-135 (280)
187 PF06239 ECSIT: Evolutionarily 96.6 0.018 3.8E-07 53.6 9.8 98 387-485 34-154 (228)
188 PRK10153 DNA-binding transcrip 96.6 0.051 1.1E-06 59.4 15.2 141 394-536 333-488 (517)
189 PF10037 MRP-S27: Mitochondria 96.6 0.03 6.5E-07 58.7 12.8 119 227-345 62-186 (429)
190 PF08579 RPM2: Mitochondrial r 96.5 0.045 9.8E-07 45.1 10.3 79 301-379 29-116 (120)
191 PRK15363 pathogenicity island 96.4 0.076 1.6E-06 47.2 12.2 85 204-291 43-128 (157)
192 PF12688 TPR_5: Tetratrico pep 96.4 0.088 1.9E-06 44.9 12.2 91 404-494 7-100 (120)
193 KOG2041 WD40 repeat protein [G 96.4 2 4.3E-05 46.8 25.9 199 127-354 689-900 (1189)
194 COG3898 Uncharacterized membra 96.4 1.4 3E-05 44.8 25.7 285 198-495 84-389 (531)
195 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.017 3.6E-07 60.0 8.7 63 501-563 75-140 (453)
196 PF12688 TPR_5: Tetratrico pep 96.3 0.081 1.8E-06 45.2 11.5 90 203-293 8-102 (120)
197 COG4700 Uncharacterized protei 96.3 0.63 1.4E-05 42.2 17.0 126 329-456 86-216 (251)
198 KOG2053 Mitochondrial inherita 96.2 2.9 6.2E-05 47.1 37.9 488 70-578 54-620 (932)
199 PF13281 DUF4071: Domain of un 96.2 0.37 8E-06 49.6 17.9 160 372-534 146-338 (374)
200 KOG2796 Uncharacterized conser 96.2 0.34 7.5E-06 46.2 16.0 169 269-439 139-325 (366)
201 KOG2796 Uncharacterized conser 96.2 0.4 8.6E-06 45.8 16.3 163 370-533 139-318 (366)
202 PF13414 TPR_11: TPR repeat; P 96.2 0.0085 1.8E-07 45.6 4.6 64 469-532 3-69 (69)
203 KOG2041 WD40 repeat protein [G 96.2 2.6 5.6E-05 46.0 27.4 231 162-426 689-951 (1189)
204 PF14938 SNAP: Soluble NSF att 96.1 0.13 2.8E-06 51.9 14.2 121 413-533 89-228 (282)
205 KOG1538 Uncharacterized conser 96.1 0.52 1.1E-05 50.6 18.3 232 97-395 558-801 (1081)
206 COG5107 RNA14 Pre-mRNA 3'-end 95.9 2.6 5.5E-05 43.7 28.4 92 82-177 29-121 (660)
207 PF14559 TPR_19: Tetratricopep 95.9 0.032 6.9E-07 42.2 6.7 48 446-495 4-51 (68)
208 KOG2280 Vacuolar assembly/sort 95.9 3.8 8.1E-05 45.3 27.2 115 430-560 681-795 (829)
209 KOG2280 Vacuolar assembly/sort 95.9 3.8 8.3E-05 45.3 26.7 103 374-492 691-793 (829)
210 PF13428 TPR_14: Tetratricopep 95.9 0.012 2.6E-07 40.1 3.7 42 502-543 2-43 (44)
211 PRK10866 outer membrane biogen 95.8 2 4.4E-05 42.1 20.6 194 99-324 37-239 (243)
212 PRK10803 tol-pal system protei 95.8 0.062 1.3E-06 53.1 9.9 93 471-563 145-245 (263)
213 PF03704 BTAD: Bacterial trans 95.7 0.15 3.2E-06 45.6 11.5 60 503-562 64-123 (146)
214 KOG0550 Molecular chaperone (D 95.7 3 6.5E-05 42.8 23.0 83 104-189 59-141 (486)
215 PF07079 DUF1347: Protein of u 95.3 4.2 9.2E-05 42.3 36.4 73 489-562 444-522 (549)
216 KOG1258 mRNA processing protei 95.3 5.2 0.00011 43.2 33.5 410 94-552 44-492 (577)
217 PF09205 DUF1955: Domain of un 95.2 1.7 3.7E-05 37.1 15.0 140 409-567 13-152 (161)
218 KOG1130 Predicted G-alpha GTPa 95.1 0.15 3.3E-06 51.6 9.7 256 205-460 26-342 (639)
219 PF13371 TPR_9: Tetratricopept 95.1 0.058 1.3E-06 41.5 5.7 62 477-538 3-66 (73)
220 PF12921 ATP13: Mitochondrial 95.0 0.27 5.9E-06 42.4 10.0 49 429-477 48-96 (126)
221 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 3.1 6.7E-05 43.7 19.2 61 366-426 74-140 (453)
222 COG4235 Cytochrome c biogenesi 95.0 0.45 9.8E-06 46.8 12.4 97 195-293 155-254 (287)
223 PRK10803 tol-pal system protei 94.9 0.4 8.6E-06 47.4 12.1 51 409-461 154-208 (263)
224 PF12921 ATP13: Mitochondrial 94.8 0.33 7.2E-06 41.9 10.0 82 434-515 3-102 (126)
225 PF13525 YfiO: Outer membrane 94.7 1.3 2.7E-05 42.2 14.9 52 275-326 14-71 (203)
226 KOG0543 FKBP-type peptidyl-pro 94.6 0.29 6.3E-06 49.9 10.4 63 502-564 258-320 (397)
227 KOG3941 Intermediate in Toll s 94.5 0.28 6E-06 47.3 9.5 101 385-486 52-175 (406)
228 COG0457 NrfG FOG: TPR repeat [ 94.4 4.5 9.9E-05 38.2 27.2 196 367-564 59-265 (291)
229 PF13424 TPR_12: Tetratricopep 94.3 0.055 1.2E-06 42.3 3.9 59 504-562 8-73 (78)
230 COG3118 Thioredoxin domain-con 94.2 2.9 6.3E-05 41.2 15.9 122 442-566 143-267 (304)
231 KOG1130 Predicted G-alpha GTPa 94.0 0.43 9.3E-06 48.5 10.0 252 104-357 27-340 (639)
232 smart00299 CLH Clathrin heavy 93.9 2.2 4.7E-05 37.7 13.8 42 337-379 12-53 (140)
233 PF13525 YfiO: Outer membrane 93.8 6.1 0.00013 37.5 19.6 59 303-361 11-71 (203)
234 PF13424 TPR_12: Tetratricopep 93.8 0.14 3.1E-06 39.9 5.4 61 400-460 7-73 (78)
235 KOG1920 IkappaB kinase complex 93.7 9.1 0.0002 44.8 20.8 51 477-527 973-1025(1265)
236 KOG4555 TPR repeat-containing 93.4 0.7 1.5E-05 39.2 8.7 89 478-566 52-146 (175)
237 PF04053 Coatomer_WDAD: Coatom 93.3 2.4 5.3E-05 45.4 15.1 158 104-292 271-428 (443)
238 KOG2066 Vacuolar assembly/sort 93.3 17 0.00037 40.7 24.5 75 166-243 393-467 (846)
239 PF03704 BTAD: Bacterial trans 93.2 0.92 2E-05 40.4 10.3 68 402-471 66-138 (146)
240 PF10300 DUF3808: Protein of u 93.1 15 0.00033 39.9 23.5 159 200-360 192-375 (468)
241 PRK11906 transcriptional regul 93.0 6.3 0.00014 41.6 16.8 157 399-558 252-430 (458)
242 COG4785 NlpI Lipoprotein NlpI, 92.9 4.5 9.7E-05 37.9 13.7 160 399-565 100-267 (297)
243 KOG2610 Uncharacterized conser 92.8 3.1 6.7E-05 41.5 13.4 148 411-561 116-273 (491)
244 PF04097 Nic96: Nup93/Nic96; 92.5 22 0.00047 40.2 21.9 84 306-394 267-354 (613)
245 KOG2114 Vacuolar assembly/sort 92.4 23 0.00049 40.1 26.6 174 99-295 338-519 (933)
246 smart00299 CLH Clathrin heavy 92.1 7.8 0.00017 34.1 15.4 43 135-178 12-54 (140)
247 PF04053 Coatomer_WDAD: Coatom 92.1 2.6 5.6E-05 45.2 13.3 133 407-565 270-403 (443)
248 PF13281 DUF4071: Domain of un 91.9 13 0.00029 38.5 17.6 72 271-342 146-227 (374)
249 PF04184 ST7: ST7 protein; In 91.9 5.6 0.00012 42.1 14.8 152 411-574 181-334 (539)
250 KOG1585 Protein required for f 91.8 13 0.00027 35.7 17.0 87 471-558 152-250 (308)
251 PRK11906 transcriptional regul 91.7 1.7 3.7E-05 45.7 11.0 117 448-564 273-401 (458)
252 KOG0543 FKBP-type peptidyl-pro 91.5 2.3 5.1E-05 43.6 11.5 95 470-564 258-355 (397)
253 KOG1941 Acetylcholine receptor 91.4 7.6 0.00017 39.2 14.5 45 308-352 17-63 (518)
254 COG0457 NrfG FOG: TPR repeat [ 91.4 13 0.00027 35.0 26.1 195 335-533 62-268 (291)
255 KOG2610 Uncharacterized conser 91.3 2.2 4.8E-05 42.4 10.5 115 445-561 115-235 (491)
256 PF13512 TPR_18: Tetratricopep 91.2 4.3 9.4E-05 35.5 11.3 58 479-536 20-82 (142)
257 COG1729 Uncharacterized protei 91.2 2.3 5E-05 41.4 10.6 95 400-495 144-241 (262)
258 PF10300 DUF3808: Protein of u 91.1 13 0.00028 40.5 17.6 161 401-564 191-376 (468)
259 COG5107 RNA14 Pre-mRNA 3'-end 90.9 23 0.0005 37.1 31.1 129 434-563 398-530 (660)
260 KOG3941 Intermediate in Toll s 90.8 1.3 2.8E-05 42.9 8.3 103 74-180 49-173 (406)
261 COG4105 ComL DNA uptake lipopr 90.5 10 0.00022 36.7 14.1 76 267-343 36-117 (254)
262 PF07719 TPR_2: Tetratricopept 90.3 0.46 1E-05 29.8 3.5 30 504-533 4-33 (34)
263 PF00515 TPR_1: Tetratricopept 90.2 0.34 7.4E-06 30.5 2.9 31 503-533 3-33 (34)
264 PF13176 TPR_7: Tetratricopept 90.0 0.61 1.3E-05 30.0 4.0 26 537-562 1-26 (36)
265 COG1747 Uncharacterized N-term 89.8 14 0.00031 39.2 15.3 197 59-276 42-249 (711)
266 COG1729 Uncharacterized protei 89.8 2.2 4.8E-05 41.5 9.1 58 507-564 184-244 (262)
267 PRK15331 chaperone protein Sic 89.7 7.2 0.00016 35.1 11.6 84 409-495 48-131 (165)
268 PRK09687 putative lyase; Provi 89.7 24 0.00051 35.4 25.8 235 263-510 34-276 (280)
269 PF09205 DUF1955: Domain of un 89.5 13 0.00028 32.0 13.0 63 401-465 89-151 (161)
270 PF08631 SPO22: Meiosis protei 89.0 27 0.00058 35.0 22.5 60 373-433 127-192 (278)
271 PF04184 ST7: ST7 protein; In 88.9 24 0.00051 37.7 16.2 97 437-533 263-378 (539)
272 COG3118 Thioredoxin domain-con 88.8 26 0.00057 34.7 17.0 154 406-561 142-299 (304)
273 PF04097 Nic96: Nup93/Nic96; 88.8 47 0.001 37.6 23.1 71 94-166 111-188 (613)
274 PF13170 DUF4003: Protein of u 88.8 6 0.00013 39.9 11.9 62 414-476 159-224 (297)
275 PF07035 Mic1: Colon cancer-as 88.5 13 0.00028 33.8 12.5 134 114-259 14-148 (167)
276 KOG2114 Vacuolar assembly/sort 87.7 20 0.00043 40.5 15.5 80 375-457 376-455 (933)
277 KOG1258 mRNA processing protei 87.6 47 0.001 36.2 24.8 381 58-445 44-487 (577)
278 PF02259 FAT: FAT domain; Int 87.4 39 0.00084 35.0 19.5 149 396-547 144-304 (352)
279 KOG4555 TPR repeat-containing 87.1 12 0.00026 32.0 10.5 86 376-461 52-143 (175)
280 KOG1941 Acetylcholine receptor 86.8 25 0.00055 35.7 14.3 162 299-460 85-273 (518)
281 COG3629 DnrI DNA-binding trans 86.8 4.7 0.0001 39.9 9.4 76 367-442 153-236 (280)
282 PF13428 TPR_14: Tetratricopep 86.7 1.3 2.7E-05 30.0 4.0 30 536-565 2-31 (44)
283 KOG0890 Protein kinase of the 86.7 1.1E+02 0.0024 39.4 32.2 309 240-566 1392-1733(2382)
284 KOG2066 Vacuolar assembly/sort 86.7 57 0.0012 36.8 18.1 22 202-223 511-532 (846)
285 PF07035 Mic1: Colon cancer-as 86.1 23 0.00049 32.2 12.7 133 216-360 14-148 (167)
286 PF09613 HrpB1_HrpK: Bacterial 86.1 4.2 9.1E-05 36.4 7.9 54 512-565 21-74 (160)
287 KOG1586 Protein required for f 85.7 31 0.00066 33.0 13.4 55 479-533 164-227 (288)
288 TIGR02561 HrpB1_HrpK type III 85.3 5.2 0.00011 35.2 7.8 54 513-566 22-75 (153)
289 COG4649 Uncharacterized protei 85.2 16 0.00034 33.1 10.8 49 278-326 70-123 (221)
290 PF02259 FAT: FAT domain; Int 85.0 51 0.0011 34.1 17.4 67 500-566 145-215 (352)
291 PF13170 DUF4003: Protein of u 84.7 17 0.00037 36.7 12.6 122 146-269 78-220 (297)
292 KOG1920 IkappaB kinase complex 84.5 97 0.0021 36.9 22.6 115 373-498 914-1028(1265)
293 KOG4648 Uncharacterized conser 84.2 4.9 0.00011 40.2 8.0 45 407-453 106-151 (536)
294 PF13176 TPR_7: Tetratricopept 84.2 2.4 5.1E-05 27.2 4.2 26 400-425 1-26 (36)
295 PF13512 TPR_18: Tetratricopep 84.0 29 0.00063 30.5 13.0 113 407-535 19-133 (142)
296 KOG4234 TPR repeat-containing 83.4 4 8.8E-05 37.6 6.6 89 478-566 104-199 (271)
297 PF09613 HrpB1_HrpK: Bacterial 83.3 34 0.00073 30.7 13.0 90 441-533 18-109 (160)
298 KOG4648 Uncharacterized conser 83.0 2.2 4.8E-05 42.4 5.2 113 440-559 104-219 (536)
299 COG4105 ComL DNA uptake lipopr 82.8 49 0.0011 32.2 17.3 157 95-253 35-226 (254)
300 PRK09687 putative lyase; Provi 82.8 55 0.0012 32.8 26.6 75 365-444 204-278 (280)
301 PF00515 TPR_1: Tetratricopept 82.7 2.7 5.9E-05 26.2 4.0 28 399-426 2-29 (34)
302 cd00923 Cyt_c_Oxidase_Va Cytoc 82.3 8.6 0.00019 31.0 7.2 63 413-477 22-84 (103)
303 PF02284 COX5A: Cytochrome c o 81.9 9.7 0.00021 31.0 7.5 62 415-478 27-88 (108)
304 PF10602 RPN7: 26S proteasome 81.8 18 0.00039 33.4 10.7 94 401-496 39-140 (177)
305 PF13431 TPR_17: Tetratricopep 81.8 2.6 5.5E-05 26.7 3.5 30 256-286 4-33 (34)
306 PF13181 TPR_8: Tetratricopept 81.7 1.5 3.3E-05 27.4 2.5 29 504-532 4-32 (34)
307 PF07721 TPR_4: Tetratricopept 80.7 2.3 5E-05 24.9 2.9 24 536-559 2-25 (26)
308 KOG0276 Vesicle coat complex C 80.1 14 0.0003 40.1 10.1 162 94-292 580-747 (794)
309 COG3629 DnrI DNA-binding trans 80.1 7.8 0.00017 38.4 7.9 61 503-563 155-215 (280)
310 PF07719 TPR_2: Tetratricopept 79.7 3.4 7.3E-05 25.7 3.7 29 536-564 2-30 (34)
311 KOG4570 Uncharacterized conser 79.6 19 0.00042 35.8 10.1 101 159-261 58-165 (418)
312 PF13374 TPR_10: Tetratricopep 79.5 3.6 7.7E-05 27.0 4.0 28 536-563 3-30 (42)
313 TIGR02561 HrpB1_HrpK type III 77.2 52 0.0011 29.1 11.1 20 276-295 54-73 (153)
314 TIGR02508 type_III_yscG type I 76.7 37 0.0008 27.7 9.1 85 247-335 21-105 (115)
315 PF00637 Clathrin: Region in C 75.3 1.8 3.9E-05 38.4 1.9 84 237-323 13-96 (143)
316 PF10602 RPN7: 26S proteasome 74.3 30 0.00064 32.0 9.7 27 167-193 38-64 (177)
317 PF13181 TPR_8: Tetratricopept 73.8 7.1 0.00015 24.2 4.0 28 536-563 2-29 (34)
318 PF00637 Clathrin: Region in C 73.7 1.7 3.6E-05 38.6 1.3 82 338-422 13-94 (143)
319 KOG4570 Uncharacterized conser 73.4 27 0.00058 34.8 9.3 96 362-461 59-163 (418)
320 KOG0991 Replication factor C, 73.2 34 0.00073 32.7 9.5 56 185-242 228-283 (333)
321 KOG1498 26S proteasome regulat 73.1 1.2E+02 0.0026 31.4 16.2 192 364-584 49-261 (439)
322 PF13374 TPR_10: Tetratricopep 73.0 7.5 0.00016 25.3 4.2 28 399-426 3-30 (42)
323 PRK13800 putative oxidoreducta 72.7 2.2E+02 0.0047 34.2 24.0 61 467-528 787-847 (897)
324 PRK11619 lytic murein transgly 72.6 1.8E+02 0.0039 33.2 37.7 380 169-567 103-508 (644)
325 PF11207 DUF2989: Protein of u 72.4 18 0.00038 33.8 7.5 74 481-555 119-198 (203)
326 PRK10941 hypothetical protein; 72.1 16 0.00036 36.2 7.9 62 503-564 183-244 (269)
327 KOG0276 Vesicle coat complex C 71.4 74 0.0016 34.8 12.6 145 73-255 600-745 (794)
328 TIGR02508 type_III_yscG type I 71.0 56 0.0012 26.7 9.8 61 375-438 47-107 (115)
329 PF14853 Fis1_TPR_C: Fis1 C-te 70.2 31 0.00067 24.5 6.7 50 538-613 4-53 (53)
330 COG3947 Response regulator con 70.2 1.2E+02 0.0026 30.2 13.1 66 268-333 281-354 (361)
331 PF13174 TPR_6: Tetratricopept 69.7 5.9 0.00013 24.2 2.9 28 537-564 2-29 (33)
332 PRK15180 Vi polysaccharide bio 69.2 40 0.00087 35.6 9.9 120 410-533 301-423 (831)
333 PF11207 DUF2989: Protein of u 69.2 36 0.00079 31.8 8.8 73 314-387 123-198 (203)
334 PRK15180 Vi polysaccharide bio 69.1 26 0.00056 36.9 8.5 130 378-512 300-436 (831)
335 PF13762 MNE1: Mitochondrial s 68.5 50 0.0011 29.2 9.1 77 168-244 42-128 (145)
336 smart00028 TPR Tetratricopepti 67.2 12 0.00025 21.9 3.9 28 505-532 5-32 (34)
337 PF04910 Tcf25: Transcriptiona 66.8 66 0.0014 33.6 11.4 64 500-563 99-167 (360)
338 KOG1550 Extracellular protein 66.3 2.2E+02 0.0048 31.8 21.7 116 247-364 228-360 (552)
339 PF14853 Fis1_TPR_C: Fis1 C-te 66.1 9.2 0.0002 27.1 3.4 30 507-536 7-36 (53)
340 PRK12798 chemotaxis protein; R 65.7 1.8E+02 0.004 30.6 22.9 180 380-562 125-322 (421)
341 cd00923 Cyt_c_Oxidase_Va Cytoc 65.2 28 0.00061 28.1 6.2 37 492-528 33-69 (103)
342 PF07721 TPR_4: Tetratricopept 64.3 13 0.00027 21.7 3.3 21 270-290 5-25 (26)
343 COG4649 Uncharacterized protei 62.1 1.3E+02 0.0028 27.6 16.3 122 408-529 68-195 (221)
344 PF02284 COX5A: Cytochrome c o 62.0 30 0.00066 28.3 5.9 50 493-542 37-86 (108)
345 KOG3364 Membrane protein invol 61.3 44 0.00095 29.0 7.1 49 515-563 49-99 (149)
346 KOG1464 COP9 signalosome, subu 61.1 1.7E+02 0.0037 28.7 17.4 237 279-523 40-325 (440)
347 PF11768 DUF3312: Protein of u 60.6 73 0.0016 34.6 10.3 56 371-426 412-472 (545)
348 KOG2300 Uncharacterized conser 60.1 2.5E+02 0.0053 30.2 18.7 145 181-325 298-473 (629)
349 KOG1585 Protein required for f 59.7 1.7E+02 0.0038 28.3 17.3 162 348-524 74-250 (308)
350 PF04910 Tcf25: Transcriptiona 59.2 2.3E+02 0.005 29.6 16.7 92 440-533 110-225 (360)
351 PF10345 Cohesin_load: Cohesin 58.9 3.1E+02 0.0068 31.1 31.5 192 58-258 29-252 (608)
352 KOG2396 HAT (Half-A-TPR) repea 58.8 2.6E+02 0.0057 30.1 31.5 75 94-170 104-179 (568)
353 COG3947 Response regulator con 58.6 35 0.00076 33.7 6.9 60 503-562 281-340 (361)
354 TIGR03504 FimV_Cterm FimV C-te 58.0 18 0.00039 24.5 3.5 27 539-565 3-29 (44)
355 PF13762 MNE1: Mitochondrial s 56.8 1.4E+02 0.0031 26.4 10.1 50 397-446 78-128 (145)
356 PF09477 Type_III_YscG: Bacter 56.6 1.2E+02 0.0025 25.3 9.0 80 245-327 20-99 (116)
357 PF13174 TPR_6: Tetratricopept 56.5 12 0.00026 22.8 2.4 27 507-533 6-32 (33)
358 KOG4077 Cytochrome c oxidase, 56.1 69 0.0015 27.4 7.2 60 416-477 67-126 (149)
359 PF14561 TPR_20: Tetratricopep 55.8 27 0.00059 28.0 4.9 44 522-565 9-52 (90)
360 PF08631 SPO22: Meiosis protei 55.4 2.3E+02 0.0049 28.3 25.4 23 401-424 250-272 (278)
361 KOG0991 Replication factor C, 55.3 2E+02 0.0044 27.7 11.1 147 272-443 136-282 (333)
362 COG1747 Uncharacterized N-term 54.7 3.1E+02 0.0068 29.7 20.5 162 366-534 65-238 (711)
363 PF06552 TOM20_plant: Plant sp 54.3 33 0.00073 31.4 5.7 46 517-562 51-100 (186)
364 COG4455 ImpE Protein of avirul 53.8 46 0.001 31.5 6.5 62 473-534 5-68 (273)
365 PRK13342 recombination factor 52.3 3.2E+02 0.007 29.2 15.4 99 228-344 173-277 (413)
366 KOG4279 Serine/threonine prote 51.0 4.2E+02 0.0092 30.2 14.3 182 299-534 203-399 (1226)
367 KOG4642 Chaperone-dependent E3 50.8 53 0.0012 31.6 6.5 79 484-562 25-105 (284)
368 PHA02875 ankyrin repeat protei 50.0 3.1E+02 0.0068 29.1 13.7 78 104-190 9-90 (413)
369 PF10366 Vps39_1: Vacuolar sor 49.7 1E+02 0.0022 25.7 7.6 28 298-325 40-67 (108)
370 PF09670 Cas_Cas02710: CRISPR- 49.7 2.6E+02 0.0056 29.5 12.4 52 409-461 142-197 (379)
371 COG4455 ImpE Protein of avirul 49.2 60 0.0013 30.8 6.5 51 137-188 8-58 (273)
372 PHA02875 ankyrin repeat protei 49.1 3.5E+02 0.0076 28.7 17.3 12 416-427 298-309 (413)
373 PF11846 DUF3366: Domain of un 48.2 61 0.0013 30.3 6.9 34 499-532 142-175 (193)
374 KOG1550 Extracellular protein 47.8 4.4E+02 0.0096 29.4 22.2 75 347-428 454-539 (552)
375 PRK13800 putative oxidoreducta 46.8 5.8E+02 0.013 30.6 28.3 125 330-461 754-880 (897)
376 PF10579 Rapsyn_N: Rapsyn N-te 46.8 61 0.0013 25.2 5.2 47 445-491 18-65 (80)
377 PRK13342 recombination factor 46.0 4E+02 0.0087 28.4 16.4 101 329-447 173-279 (413)
378 smart00386 HAT HAT (Half-A-TPR 46.0 27 0.00059 20.9 2.9 29 515-543 1-29 (33)
379 KOG2422 Uncharacterized conser 45.5 3.1E+02 0.0068 30.1 11.9 55 508-562 349-405 (665)
380 PF09477 Type_III_YscG: Bacter 45.4 1.8E+02 0.0039 24.2 9.6 87 347-437 21-107 (116)
381 PF04190 DUF410: Protein of un 45.3 3.2E+02 0.0069 27.0 16.8 82 365-461 88-169 (260)
382 PF13929 mRNA_stabil: mRNA sta 45.2 3.3E+02 0.0072 27.2 14.7 63 328-390 198-261 (292)
383 TIGR03504 FimV_Cterm FimV C-te 45.0 58 0.0013 22.1 4.4 24 404-427 5-28 (44)
384 PF06552 TOM20_plant: Plant sp 44.9 77 0.0017 29.1 6.4 29 416-446 53-82 (186)
385 PF07163 Pex26: Pex26 protein; 44.9 2.1E+02 0.0045 28.4 9.6 86 303-390 89-181 (309)
386 PF07163 Pex26: Pex26 protein; 44.4 2.3E+02 0.0051 28.1 9.9 87 405-494 90-183 (309)
387 PRK11619 lytic murein transgly 43.4 5.5E+02 0.012 29.3 31.2 125 411-542 254-383 (644)
388 PF11846 DUF3366: Domain of un 43.1 46 0.00099 31.1 5.2 45 518-563 128-172 (193)
389 PF13934 ELYS: Nuclear pore co 43.1 3.1E+02 0.0068 26.4 11.6 32 481-512 152-183 (226)
390 KOG1308 Hsp70-interacting prot 42.8 19 0.00041 36.4 2.5 85 483-567 128-214 (377)
391 PF10579 Rapsyn_N: Rapsyn N-te 41.2 77 0.0017 24.6 5.0 46 410-455 18-65 (80)
392 COG2178 Predicted RNA-binding 40.9 2.5E+02 0.0055 26.2 9.1 50 377-426 39-97 (204)
393 COG2976 Uncharacterized protei 40.5 3.2E+02 0.0068 25.7 13.8 87 342-428 99-189 (207)
394 KOG4234 TPR repeat-containing 40.4 1.8E+02 0.0039 27.3 8.1 54 273-326 141-197 (271)
395 KOG0545 Aryl-hydrocarbon recep 39.7 2.6E+02 0.0056 27.2 9.2 54 510-563 239-292 (329)
396 PF10366 Vps39_1: Vacuolar sor 39.6 1.7E+02 0.0036 24.4 7.4 28 197-224 40-67 (108)
397 COG2976 Uncharacterized protei 39.6 3.3E+02 0.0071 25.6 14.1 90 238-327 96-189 (207)
398 KOG0403 Neoplastic transformat 38.8 5.1E+02 0.011 27.6 19.9 58 371-428 513-573 (645)
399 PF11848 DUF3368: Domain of un 38.1 1.2E+02 0.0026 20.9 5.2 33 409-441 13-45 (48)
400 PF12862 Apc5: Anaphase-promot 37.8 86 0.0019 25.2 5.3 52 512-563 9-69 (94)
401 PF13929 mRNA_stabil: mRNA sta 37.5 4.4E+02 0.0094 26.4 15.6 57 263-319 199-260 (292)
402 PF10345 Cohesin_load: Cohesin 37.4 6.6E+02 0.014 28.5 37.5 190 94-292 29-251 (608)
403 KOG0292 Vesicle coat complex C 36.3 4.3E+02 0.0093 30.8 11.6 131 375-529 651-781 (1202)
404 PRK10564 maltose regulon perip 35.9 71 0.0015 32.0 5.2 41 400-440 259-299 (303)
405 PF11838 ERAP1_C: ERAP1-like C 35.3 4.9E+02 0.011 26.3 17.7 112 448-560 145-262 (324)
406 PF09670 Cas_Cas02710: CRISPR- 35.2 4.6E+02 0.01 27.6 11.6 53 442-496 140-196 (379)
407 cd08819 CARD_MDA5_2 Caspase ac 35.0 2.3E+02 0.005 22.5 7.0 39 278-317 48-86 (88)
408 PRK10564 maltose regulon perip 35.0 64 0.0014 32.3 4.8 38 199-236 260-297 (303)
409 KOG4507 Uncharacterized conser 33.9 1.2E+02 0.0026 33.2 6.7 100 446-546 620-721 (886)
410 smart00804 TAP_C C-terminal do 33.8 71 0.0015 23.6 3.7 25 107-131 38-62 (63)
411 PF15469 Sec5: Exocyst complex 33.8 3.8E+02 0.0082 24.6 11.1 25 437-461 90-114 (182)
412 COG2909 MalT ATP-dependent tra 33.7 8.4E+02 0.018 28.6 26.8 216 278-494 427-684 (894)
413 KOG2063 Vacuolar assembly/sort 33.5 8.7E+02 0.019 28.7 15.6 128 299-444 506-637 (877)
414 PF04190 DUF410: Protein of un 33.5 4.8E+02 0.01 25.7 17.0 52 264-315 88-139 (260)
415 PF11663 Toxin_YhaV: Toxin wit 33.3 49 0.0011 28.6 3.2 33 308-342 106-138 (140)
416 KOG0376 Serine-threonine phosp 33.3 29 0.00063 36.7 2.2 94 440-536 11-107 (476)
417 PF08311 Mad3_BUB1_I: Mad3/BUB 33.2 2.9E+02 0.0063 23.7 8.1 42 519-560 81-124 (126)
418 PF11848 DUF3368: Domain of un 32.6 1.6E+02 0.0034 20.3 5.1 33 308-340 13-45 (48)
419 cd08326 CARD_CASP9 Caspase act 32.2 1.7E+02 0.0036 23.2 5.8 60 150-213 19-78 (84)
420 KOG0686 COP9 signalosome, subu 32.1 6.3E+02 0.014 26.7 13.9 58 369-426 152-215 (466)
421 PF14863 Alkyl_sulf_dimr: Alky 31.9 1.3E+02 0.0027 26.6 5.6 65 485-552 57-121 (141)
422 PF12968 DUF3856: Domain of Un 31.8 2.9E+02 0.0063 23.6 7.2 58 504-561 58-126 (144)
423 KOG1586 Protein required for f 31.7 4.9E+02 0.011 25.3 13.8 18 444-461 165-182 (288)
424 COG4785 NlpI Lipoprotein NlpI, 31.6 4.7E+02 0.01 25.0 16.6 64 263-326 96-162 (297)
425 PRK10941 hypothetical protein; 31.3 4.1E+02 0.0088 26.5 9.8 57 403-461 186-243 (269)
426 PF11768 DUF3312: Protein of u 30.5 3.3E+02 0.0071 29.9 9.4 28 95-122 408-436 (545)
427 PF14669 Asp_Glu_race_2: Putat 30.5 4.6E+02 0.0099 24.5 13.4 97 185-291 96-206 (233)
428 PRK09169 hypothetical protein; 30.1 1.4E+03 0.031 30.2 43.4 434 128-561 160-692 (2316)
429 PF13934 ELYS: Nuclear pore co 30.0 5.1E+02 0.011 24.9 12.0 112 380-501 91-204 (226)
430 PF11663 Toxin_YhaV: Toxin wit 28.8 69 0.0015 27.7 3.4 34 104-140 105-138 (140)
431 KOG2659 LisH motif-containing 28.8 4.3E+02 0.0093 25.4 8.9 92 400-494 28-128 (228)
432 PF14689 SPOB_a: Sensor_kinase 28.6 1.8E+02 0.004 21.3 5.3 25 436-460 26-50 (62)
433 TIGR02270 conserved hypothetic 27.8 7.7E+02 0.017 26.3 24.9 46 163-208 98-143 (410)
434 PF14689 SPOB_a: Sensor_kinase 27.7 85 0.0019 23.0 3.3 28 298-325 24-51 (62)
435 cd08819 CARD_MDA5_2 Caspase ac 27.2 3.2E+02 0.007 21.8 6.9 38 379-417 48-85 (88)
436 PF12069 DUF3549: Protein of u 26.6 7.2E+02 0.016 25.6 12.2 86 373-461 172-258 (340)
437 COG4976 Predicted methyltransf 26.2 1.2E+02 0.0026 29.0 4.7 56 479-534 5-62 (287)
438 KOG2396 HAT (Half-A-TPR) repea 26.2 8.8E+02 0.019 26.4 25.5 64 58-124 104-170 (568)
439 PF09986 DUF2225: Uncharacteri 26.2 5.8E+02 0.012 24.3 9.6 62 504-565 121-195 (214)
440 PF14669 Asp_Glu_race_2: Putat 26.1 5.5E+02 0.012 24.0 12.7 58 437-495 136-207 (233)
441 PF08424 NRDE-2: NRDE-2, neces 26.1 7.2E+02 0.016 25.4 13.4 138 195-334 18-192 (321)
442 KOG0403 Neoplastic transformat 26.0 8.4E+02 0.018 26.1 17.7 56 473-528 513-570 (645)
443 KOG3807 Predicted membrane pro 25.1 7.4E+02 0.016 25.2 11.2 102 345-459 229-337 (556)
444 COG2909 MalT ATP-dependent tra 24.8 1.2E+03 0.026 27.5 23.9 22 372-393 623-644 (894)
445 KOG4077 Cytochrome c oxidase, 24.6 3.1E+02 0.0067 23.6 6.3 38 492-529 75-112 (149)
446 TIGR02270 conserved hypothetic 24.5 8.8E+02 0.019 25.9 25.1 92 394-496 188-279 (410)
447 smart00544 MA3 Domain in DAP-5 24.4 4.1E+02 0.0088 22.0 7.6 23 302-324 7-29 (113)
448 PRK11639 zinc uptake transcrip 24.1 2.2E+02 0.0047 26.0 6.1 62 424-487 17-78 (169)
449 cd00280 TRFH Telomeric Repeat 23.7 4E+02 0.0086 24.7 7.3 30 476-505 118-147 (200)
450 PRK14962 DNA polymerase III su 23.7 9.8E+02 0.021 26.1 12.4 37 302-339 249-285 (472)
451 KOG3824 Huntingtin interacting 23.4 1.3E+02 0.0027 30.2 4.4 57 481-537 128-186 (472)
452 PF08225 Antimicrobial19: Pseu 23.3 54 0.0012 17.9 1.1 11 665-675 11-21 (23)
453 KOG3824 Huntingtin interacting 23.0 1.4E+02 0.003 29.8 4.7 49 512-560 127-175 (472)
454 cd08332 CARD_CASP2 Caspase act 23.0 3.3E+02 0.0072 21.8 6.2 35 177-211 46-80 (90)
455 PF08311 Mad3_BUB1_I: Mad3/BUB 22.8 4.9E+02 0.011 22.3 8.3 43 249-291 81-124 (126)
456 PF12862 Apc5: Anaphase-promot 22.8 4E+02 0.0087 21.3 8.3 21 441-461 49-69 (94)
457 COG4976 Predicted methyltransf 22.7 1.5E+02 0.0033 28.4 4.6 55 512-566 6-60 (287)
458 COG0735 Fur Fe2+/Zn2+ uptake r 22.7 3.4E+02 0.0073 24.0 6.8 63 422-486 10-72 (145)
459 PF03745 DUF309: Domain of unk 22.4 3.2E+02 0.0068 20.1 5.4 52 100-152 5-61 (62)
460 PF07720 TPR_3: Tetratricopept 22.2 1.3E+02 0.0028 19.3 3.0 14 510-523 10-23 (36)
461 cd08326 CARD_CASP9 Caspase act 22.1 2.3E+02 0.0051 22.3 5.0 40 277-316 41-80 (84)
462 PF08967 DUF1884: Domain of un 22.0 1E+02 0.0022 24.0 2.8 27 594-620 7-33 (85)
463 PRK14962 DNA polymerase III su 22.0 1.1E+03 0.023 25.9 11.9 25 208-232 255-279 (472)
464 KOG4507 Uncharacterized conser 22.0 2.5E+02 0.0055 30.8 6.7 111 283-394 590-703 (886)
465 COG5191 Uncharacterized conser 21.7 1.8E+02 0.0038 29.3 5.0 78 465-542 103-183 (435)
466 COG0735 Fur Fe2+/Zn2+ uptake r 21.5 3.7E+02 0.0079 23.8 6.8 14 248-261 37-50 (145)
467 PF02847 MA3: MA3 domain; Int 21.5 1.9E+02 0.0041 23.9 4.9 21 303-323 8-28 (113)
468 PF14561 TPR_20: Tetratricopep 21.3 4.3E+02 0.0093 21.1 8.4 62 500-561 21-85 (90)
469 PF14427 Pput2613-deam: Pput_2 21.3 3.7E+02 0.0079 22.4 5.9 57 631-687 46-102 (118)
470 PF12069 DUF3549: Protein of u 21.2 9.2E+02 0.02 24.9 13.1 96 271-369 171-267 (340)
471 COG2912 Uncharacterized conser 21.2 2.9E+02 0.0063 27.3 6.5 59 505-563 185-243 (269)
472 KOG1524 WD40 repeat-containing 20.9 4.6E+02 0.01 28.5 8.1 88 469-559 573-668 (737)
473 KOG0292 Vesicle coat complex C 20.8 1.5E+02 0.0032 34.3 4.8 49 478-529 652-700 (1202)
474 PF03943 TAP_C: TAP C-terminal 20.7 43 0.00093 23.5 0.6 26 106-131 25-50 (51)
475 COG5108 RPO41 Mitochondrial DN 20.7 4.8E+02 0.01 29.3 8.4 72 236-307 33-113 (1117)
476 PRK11639 zinc uptake transcrip 20.5 3.3E+02 0.0073 24.8 6.5 24 210-233 39-62 (169)
477 PF11123 DNA_Packaging_2: DNA 20.2 1.9E+02 0.0041 22.0 3.8 32 146-178 13-44 (82)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-128 Score=1125.80 Aligned_cols=669 Identities=33% Similarity=0.579 Sum_probs=645.6
Q ss_pred cchhHHHhhccccCccccchhhhHHHHhhcccccchhhhhccccccchhhhhhhccccccCCCCcccchhhcccccCccC
Q 005305 11 VALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECCLMEQGLKPRPKPNKIYTEELKESSLPDTQM 90 (703)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~ 90 (703)
..+..++++|.....+..|+.+++..+..+. ..+++++|+||++|+|+|++++| +++|++|+.
T Consensus 188 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~--------------~~~~~~~n~Li~~y~k~g~~~~A---~~lf~~m~~ 250 (857)
T PLN03077 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGF--------------ELDVDVVNALITMYVKCGDVVSA---RLVFDRMPR 250 (857)
T ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHHcCC--------------CcccchHhHHHHHHhcCCCHHHH---HHHHhcCCC
Confidence 3456667777766666666666655443332 23889999999999999999999 999999998
Q ss_pred CCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHH
Q 005305 91 KKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN 169 (703)
Q Consensus 91 ~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~ 169 (703)
+ |.++||+||. |++.|++++|+++|++|.+.| +.||..||+.++.+|++.|+++.|.++|..+.+.|+.||..+||
T Consensus 251 ~--d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 251 R--DCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred C--CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 7 9999999999 999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHH
Q 005305 170 RVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249 (703)
Q Consensus 170 ~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 249 (703)
+|+++|+++|++++|+++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.
T Consensus 328 ~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCC
Q 005305 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329 (703)
Q Consensus 250 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 329 (703)
|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++
T Consensus 408 a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~ 486 (857)
T PLN03077 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLK 486 (857)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986 699
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHH
Q 005305 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYG 409 (703)
Q Consensus 330 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~ 409 (703)
||..||+++|.+|++.|+++.+.++|..+.+.|+.+|..++|+||++|+|+|++++|.++|+.+ .+|+++||+||.+|+
T Consensus 487 pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~ 565 (857)
T PLN03077 487 PNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYV 565 (857)
T ss_pred CCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 005305 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 410 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 489 (703)
++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+|+|++++|.
T Consensus 566 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~ 645 (857)
T PLN03077 566 AHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAY 645 (857)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999977999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccC
Q 005305 490 ALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRML 569 (703)
Q Consensus 490 ~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~ 569 (703)
+++++|+.+||..+|++|+.+|+.+|+.+.|+.+.+++++++|+++..|+.|+++|++.|+|++|.++++.|+++|++|.
T Consensus 646 ~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~ 725 (857)
T PLN03077 646 NFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725 (857)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHHHcCcccCCCccCCCchHHHHHHHhhhhHHHHHHhcccCCC
Q 005305 570 PACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGLINTS 649 (703)
Q Consensus 570 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~e~la~~~~l~~~~ 649 (703)
||+|||++++.+|.|++||.+||+.++||+.++++..+|++.||+||+..++++.+++|+..+++||||||++|||+++|
T Consensus 726 ~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~hse~la~a~~l~~~~ 805 (857)
T PLN03077 726 PGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLAIAFGLINTV 805 (857)
T ss_pred CCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHhccHHHHHHHhhhcCC
Confidence 99999999999999999999999999999999999999999999999998886533399999999999999999999999
Q ss_pred CCCcEEEEecccccCcchHHHHHHhhhcCceEEEecCCccccccccccCCCC
Q 005305 650 DWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGD 701 (703)
Q Consensus 650 ~~~~~~~~k~l~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~~g~csc~~ 701 (703)
+|+||||+||||+|+|||+++|+||++++|+|||||.+|||||+||+|||+|
T Consensus 806 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 806 PGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.5e-126 Score=1080.13 Aligned_cols=611 Identities=71% Similarity=1.149 Sum_probs=603.6
Q ss_pred CCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHH
Q 005305 93 PSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171 (703)
Q Consensus 93 p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~L 171 (703)
++.++|+.+|. +.+.|++++|+++|+.|...+++.||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 37789999999 99999999999999999987557899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHH
Q 005305 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251 (703)
Q Consensus 172 i~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 251 (703)
+++|+++|++++|+++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.++
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCC
Q 005305 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331 (703)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 331 (703)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhc
Q 005305 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH 411 (703)
Q Consensus 332 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 411 (703)
..||++++.+|++.|.++.|.++|+.+.+.|+.||..++|+||++|+|+|++++|.++|++|.++|+++||+||.+|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 005305 412 GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491 (703)
Q Consensus 412 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 491 (703)
|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++||++|+++|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998789999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCc
Q 005305 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPA 571 (703)
Q Consensus 492 ~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~ 571 (703)
|++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|+++.+|+.|+++|++.|+|++|.++++.|+++|+++.||
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHHHcCcccCCCccCCCchH-HHHHHHhhhhHHHHHHhcccCCCC
Q 005305 572 CSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QEQRVLSYHSEKLAVAFGLINTSD 650 (703)
Q Consensus 572 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~-~~~~~~~~~~e~la~~~~l~~~~~ 650 (703)
+||+++++.+|.|++||.+||+.++||+++.++..+|++.||+||+.+++|++++ +|+..+.+||||||++|||+++|+
T Consensus 565 ~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~ 644 (697)
T PLN03081 565 CTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSE 644 (697)
T ss_pred eeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCC
Confidence 9999999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred CCcEEEEecccccCcchHHHHHHhhhcCceEEEecCCccccccccccCCCCCC
Q 005305 651 WTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDASRFHHFKDGMCSCGDYW 703 (703)
Q Consensus 651 ~~~~~~~k~l~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~~g~csc~~~w 703 (703)
|+||||+||||+|+|||+|+|+||++++|+|||||.+|||||+||+|||+|||
T Consensus 645 ~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 645 WTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1e-79 Score=716.59 Aligned_cols=614 Identities=24% Similarity=0.348 Sum_probs=541.9
Q ss_pred chhhhhhhccccccCCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHH
Q 005305 57 VECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDA 135 (703)
Q Consensus 57 ~~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 135 (703)
.+++++|+||++|+++|++..| +++|++|+++ |+++||++|. |++.|++++|+++|++|...| +.||.+||++
T Consensus 119 ~~~~~~n~li~~~~~~g~~~~A---~~~f~~m~~~--d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g-~~Pd~~t~~~ 192 (857)
T PLN03077 119 LGVRLGNAMLSMFVRFGELVHA---WYVFGKMPER--DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPC 192 (857)
T ss_pred CCchHHHHHHHHHHhCCChHHH---HHHHhcCCCC--CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHH
Confidence 4778999999999999999999 9999999987 9999999999 999999999999999999998 9999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHH
Q 005305 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEA 215 (703)
Q Consensus 136 ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A 215 (703)
++++|+..+++..+.++|..+++.|+.||+.++|+||++|+++|++++|+++|++|++||+++||+||.+|++.|++++|
T Consensus 193 ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eA 272 (857)
T PLN03077 193 VLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG 272 (857)
T ss_pred HHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 005305 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295 (703)
Q Consensus 216 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~ 295 (703)
+++|++|...|+.||..||+.++.+|++.|+++.|+++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+
T Consensus 273 l~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~ 352 (857)
T PLN03077 273 LELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK 352 (857)
T ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHh
Q 005305 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375 (703)
Q Consensus 296 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 375 (703)
|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+||+
T Consensus 353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~ 432 (857)
T PLN03077 353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIE 432 (857)
T ss_pred CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHH
Q 005305 376 FYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI 455 (703)
Q Consensus 376 ~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 455 (703)
+|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. ++.||.+||+++|.+|++.|.++.+.++
T Consensus 433 ~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i 511 (857)
T PLN03077 433 MYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEI 511 (857)
T ss_pred HHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHH
Confidence 999999999999999999999999999999999999999999999999986 6999999999999999999999999999
Q ss_pred HHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhC--CCCC
Q 005305 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG--MEPE 533 (703)
Q Consensus 456 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~--~~p~ 533 (703)
+..+.+ .|+.++..++++||++|+++|++++|.++|+++ +||..+|++|+.+|.++|+.++|..+++++.+ ..|+
T Consensus 512 ~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 512 HAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 999998 799999999999999999999999999999999 78999999999999999999999999999874 5676
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHH-hCCCccCCceeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHHHcC
Q 005305 534 KLSNYVVLLNIYNSSGKLKEAAEVIRTLR-RKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHG 612 (703)
Q Consensus 534 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g 612 (703)
..+|..++.+|++.|++++|.++|+.|. +.|+.+.... +. .++......+..++ +.+++++| +
T Consensus 589 -~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~-y~-------~lv~~l~r~G~~~e----A~~~~~~m---~ 652 (857)
T PLN03077 589 -EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH-YA-------CVVDLLGRAGKLTE----AYNFINKM---P 652 (857)
T ss_pred -cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH-HH-------HHHHHHHhCCCHHH----HHHHHHHC---C
Confidence 6899999999999999999999999998 6777543211 10 00111111222233 34555554 5
Q ss_pred cccCCCccCCCchH-HHHHHHhhhhHHHH-HHhcccCCCCCCcEEEEecccccCcchHHHHHHhhhcCceE--------E
Q 005305 613 YVPEEKTLLPDVDE-QEQRVLSYHSEKLA-VAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREI--------V 682 (703)
Q Consensus 613 ~~p~~~~~~~~~~~-~~~~~~~~~~e~la-~~~~l~~~~~~~~~~~~k~l~~~~~~~~~~~~~s~~~~~~i--------~ 682 (703)
+.||...+...+.. ...+.+ .-.|+.+ ..+.+.+...+..+.+..-+...|+-.++.+....|..+.+ |
T Consensus 653 ~~pd~~~~~aLl~ac~~~~~~-e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 653 ITPDPAVWGALLNACRIHRHV-ELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred CCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 78987765443333 111000 0011222 12334444444444444455678899999999988876632 2
Q ss_pred EecCCccccccccccC
Q 005305 683 VRDASRFHHFKDGMCS 698 (703)
Q Consensus 683 ~~d~~~~h~~~~g~cs 698 (703)
.- .+..|-|.-|--|
T Consensus 732 e~-~~~~~~f~~~d~~ 746 (857)
T PLN03077 732 EV-KGKVHAFLTDDES 746 (857)
T ss_pred EE-CCEEEEEecCCCC
Confidence 21 3567788665443
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-66 Score=594.65 Aligned_cols=502 Identities=18% Similarity=0.240 Sum_probs=461.4
Q ss_pred hhhhhhhccccccCCCCcccchhhcccccCccCC---CCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhH
Q 005305 58 ECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMK---KPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTY 133 (703)
Q Consensus 58 ~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~---~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~ 133 (703)
+...+..+++.+.++|++.+| .++|++|+.+ .++...++.++. +.+.|..++|+.+|+.|. .||..+|
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eA---l~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-----~pd~~Ty 440 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDC---IDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-----NPTLSTF 440 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHH---HHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-----CCCHHHH
Confidence 556777888888899999999 9999999987 233445566778 999999999999999885 3899999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCC----CCCcccHHHHHHHHHhC
Q 005305 134 DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP----ERNLVSCNMIIAGMIDS 209 (703)
Q Consensus 134 ~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~ 209 (703)
+.++.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||+++||+||.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999998 48999999999999999
Q ss_pred CChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 005305 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK--MGFGDNVFVSCALIDMYSKCGSIEDAQG 287 (703)
Q Consensus 210 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 287 (703)
|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|..|.+ .|+.||..+|++|+.+|+++|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 6789999999999999999999999999
Q ss_pred HHhhcCC----CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 005305 288 VFDEMSE----KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363 (703)
Q Consensus 288 ~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 363 (703)
+|++|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999976 466899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHhhHHhcCCHHHHHHHhhhc----CcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 005305 364 GLDIVANSALVDFYSKWGRIEDARHVFDKM----LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439 (703)
Q Consensus 364 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 439 (703)
.||..+|++||++|+++|++++|.++|++| ..||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+++
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999999999999999999999999999 4699999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHH----hcC-------------------ChHHHHHHHHhC-
Q 005305 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG----REG-------------------LLDEAFALIRGA- 495 (703)
Q Consensus 440 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~m- 495 (703)
+.+|++.|++++|.++|+.|.+ .|+.||..+|+++++++. +++ ..++|..+|++|
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHH
Confidence 9999999999999999999998 799999999999998743 232 346799999987
Q ss_pred --CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHh-CCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCC
Q 005305 496 --PFKTTKNMWAALLTACRVNGNLELGKFAAEKLY-GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLP 570 (703)
Q Consensus 496 --~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~ 570 (703)
++.||..+|+.++.++...+..+.+...++.+. .-.+.+..+|.+|++.+.+. .++|..++++|.+.|+.+..
T Consensus 840 ~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 840 SAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCc
Confidence 568999999999977778888888888887654 22344578999999988432 36899999999999987654
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.4e-62 Score=559.56 Aligned_cols=434 Identities=25% Similarity=0.387 Sum_probs=403.4
Q ss_pred chhHHHhhccccCccccchhhhHHHHhhcccccchhhhhccccccchhhhhhhccccccCCCCcccchhhcccccCccCC
Q 005305 12 ALDQIQNSCSFSCSFTANKVLKGKSLLSGCYFSLDKRKWKRSFQRVECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMK 91 (703)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~ 91 (703)
.+..++++|.....+..+..++......+ ...+++++|+|+++|+++|++++| +++|++|+.+
T Consensus 125 t~~~ll~a~~~~~~~~~a~~l~~~m~~~g--------------~~~~~~~~n~Li~~y~k~g~~~~A---~~lf~~m~~~ 187 (697)
T PLN03081 125 TYDALVEACIALKSIRCVKAVYWHVESSG--------------FEPDQYMMNRVLLMHVKCGMLIDA---RRLFDEMPER 187 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhC--------------CCcchHHHHHHHHHHhcCCCHHHH---HHHHhcCCCC
Confidence 44555555655555554444444332222 234889999999999999999999 9999999976
Q ss_pred CCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHH
Q 005305 92 KPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170 (703)
Q Consensus 92 ~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~ 170 (703)
|.++||++|. |++.|++++|+++|++|.+.| +.||..||+.++.+|+..|+.+.++++|..+.+.|+.+|..++|+
T Consensus 188 --~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~ 264 (697)
T PLN03081 188 --NLASWGTIIGGLVDAGNYREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264 (697)
T ss_pred --CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH
Confidence 9999999999 999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHH
Q 005305 171 VLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250 (703)
Q Consensus 171 Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 250 (703)
||++|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a 344 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCC
Q 005305 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM 330 (703)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 330 (703)
+++|..+.+.|+++|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.|
T Consensus 345 ~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~P 424 (697)
T PLN03081 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAP 424 (697)
T ss_pred HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHH-cCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC-cCChhhHHHHHHHH
Q 005305 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVR-HGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-CKNVISWNALIAGY 408 (703)
Q Consensus 331 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-~~~~~~~~~li~~~ 408 (703)
|..||+.+|.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++|++|+ .||..+|++|+.+|
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTAC 504 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999986 6999999999999999999999999999999995 68999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 468 (703)
..+|+.+.|..+++++.+ +.|+ ..+|+.+++.|++.|++++|.++++.|.+ .|+.+.
T Consensus 505 ~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~k~ 562 (697)
T PLN03081 505 RIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLSMH 562 (697)
T ss_pred HHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCccC
Confidence 999999999999999875 5675 47899999999999999999999999987 677543
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.3e-61 Score=550.41 Aligned_cols=508 Identities=18% Similarity=0.224 Sum_probs=458.7
Q ss_pred CCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHH
Q 005305 92 KPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170 (703)
Q Consensus 92 ~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~ 170 (703)
++|...|..++. +.+.|++++|+++|++|.+.|.+.++..+++.++.+|.+.|.+++|..++..|.+ ||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 567888999999 9999999999999999999884567888999999999999999999999998873 99999999
Q ss_pred HHHHHHhCCChHHHHHHHccCCC----CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCC
Q 005305 171 VLLMHVRCGMMIDARRLFDEMPE----RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246 (703)
Q Consensus 171 Li~~y~~~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 246 (703)
|+.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999975 89999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC------CCCcccHHHHHHHHHHcCCcHHHHHHH
Q 005305 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS------EKTTVGWNTIIAGYALHGYSEEALDLY 320 (703)
Q Consensus 247 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~------~~~~~~~~~li~~~~~~g~~~~A~~l~ 320 (703)
+++|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|. .||.++|+++|.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999995 478999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC----cC
Q 005305 321 YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML----CK 396 (703)
Q Consensus 321 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~----~~ 396 (703)
++|.+.|++|+..+|+.+|.+|++.|++++|..+|+.|.+.|+.||..+|++|+++|++.|++++|.++|++|. .|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999994 57
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHH
Q 005305 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476 (703)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 476 (703)
|..+|++||.+|++.|++++|.++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+ .|+.||..+|++++
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~-~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-LGLCPNTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987 79999999999999
Q ss_pred HHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHH-----------------------cCChhHHHHHHHHHh--
Q 005305 477 ELLGREGLLDEAFALIRGA---PFKTTKNMWAALLTACRV-----------------------NGNLELGKFAAEKLY-- 528 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~a~~~-----------------------~g~~~~a~~~~~~~~-- 528 (703)
.+|++.|++++|.+++++| +..||..+|++|+..|.+ .+..+.|..+++++.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999987 568999999999987653 122467888888887
Q ss_pred CCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHH
Q 005305 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEI 608 (703)
Q Consensus 529 ~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m 608 (703)
++.|+ ..+|..++..+...+.++.+.++++.|...+..+... .+.. .+.|...+ ...+..++++|
T Consensus 842 Gi~Pd-~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~-~y~~-------Li~g~~~~------~~~A~~l~~em 906 (1060)
T PLN03218 842 GTLPT-MEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQS-NLST-------LVDGFGEY------DPRAFSLLEEA 906 (1060)
T ss_pred CCCCC-HHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchh-hhHH-------HHHhhccC------hHHHHHHHHHH
Confidence 45576 6899999999989999999999998887655432111 1110 11121111 13467899999
Q ss_pred HHcCcccCCCc
Q 005305 609 SKHGYVPEEKT 619 (703)
Q Consensus 609 ~~~g~~p~~~~ 619 (703)
.+.|+.|+.++
T Consensus 907 ~~~Gi~p~~~~ 917 (1060)
T PLN03218 907 ASLGVVPSVSF 917 (1060)
T ss_pred HHcCCCCCccc
Confidence 99999999863
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.7e-28 Score=291.42 Aligned_cols=451 Identities=12% Similarity=0.051 Sum_probs=294.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHH
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 183 (703)
+...|++++|++.|+.+.+.. +.+......++..+...|++++|.+++..+.+.. +.+..++..+...|...|++++
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 483 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAK 483 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHH
Confidence 444444444444444444332 1122233334444445555555555555554432 3344555556666666666666
Q ss_pred HHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005305 184 ARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM 260 (703)
Q Consensus 184 A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 260 (703)
|.+.|+++.+ .+...+..+...+...|++++|.+.|+++...+. .+..++..+...+...|+.++|...+..+.+.
T Consensus 484 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 484 AREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6666655432 2334455555566666666666666666654422 24445555566666666666666666666555
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHH
Q 005305 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337 (703)
Q Consensus 261 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 337 (703)
+ +.+...+..++..|.+.|++++|..+++.+.. .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..
T Consensus 563 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 640 (899)
T TIGR02917 563 N-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLL 640 (899)
T ss_pred C-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 4 44455566666666666777777666666543 244567777777777777777777777776542 234455666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCH
Q 005305 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRG 414 (703)
Q Consensus 338 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~ 414 (703)
+..++...|++++|...+..+.+.. +.+...+..++..+.+.|++++|.++++.+.. .+...|..+...+...|++
T Consensus 641 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 641 LADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH
Confidence 6666677777777777777776643 23456667777777777777777777777632 3455677777777788888
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh
Q 005305 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494 (703)
Q Consensus 415 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 494 (703)
++|++.|+++... .|+..++..+..++.+.|+.++|.+.++.+.+ ..+.+...+..+...|.+.|+.++|.+.|++
T Consensus 720 ~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 720 PAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 8888888887774 45556667777788888888888888888776 3455677888888888888888888888887
Q ss_pred CC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 495 AP--FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 495 m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
+. .+++..++..+...+...|+ ++|...++++++..|+++..+..++.+|...|++++|.+.++++.+.+.
T Consensus 796 ~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 796 VVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 52 23466788888888888888 7788888888888888888888888889899999999999988887553
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-28 Score=290.98 Aligned_cols=489 Identities=13% Similarity=0.052 Sum_probs=417.3
Q ss_pred hhhhhccccccCCCCcccchhhcccccCccCCCCC-cccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHH
Q 005305 60 CLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPS-AGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALI 137 (703)
Q Consensus 60 ~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~-~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll 137 (703)
..+..+...|.+.|+..+| .+.|.......|+ ...+..++. +.+.|++++|+.+++.+.... +++..++..+.
T Consensus 398 ~~~~~l~~~~~~~~~~~~A---~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 472 (899)
T TIGR02917 398 AARTQLGISKLSQGDPSEA---IADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLG 472 (899)
T ss_pred HHHHHHHHHHHhCCChHHH---HHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHH
Confidence 3444455555566666666 6666655444333 234555666 999999999999999998764 66788999999
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhH
Q 005305 138 SACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLE 214 (703)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~ 214 (703)
..+...|++++|.+.+..+++.. +.+...+..+...|...|++++|.+.|+++.+ .+..+++.+...+.+.|+.++
T Consensus 473 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 473 AIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999998864 45566788899999999999999999998854 467789999999999999999
Q ss_pred HHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 005305 215 AFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE 294 (703)
Q Consensus 215 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 294 (703)
|...|.++...+. .+...+..+...+...|++++|..++..+.+.. +.+..++..+...|.+.|++++|...|+++.+
T Consensus 552 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 552 AVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999977643 356678888999999999999999999998764 67788999999999999999999999998754
Q ss_pred ---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHH
Q 005305 295 ---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANS 371 (703)
Q Consensus 295 ---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 371 (703)
.+...|..+...|.+.|++++|...|+++.+.. +.+..++..+...+...|+++.|..+++.+.+.. +.+..++.
T Consensus 630 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 707 (899)
T TIGR02917 630 LQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFE 707 (899)
T ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHH
Confidence 356678999999999999999999999998763 4457788899999999999999999999998875 44677888
Q ss_pred HHHhhHHhcCCHHHHHHHhhhcC--cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCH
Q 005305 372 ALVDFYSKWGRIEDARHVFDKML--CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449 (703)
Q Consensus 372 ~Li~~y~k~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 449 (703)
.+...|.+.|++++|.+.|+.+. .|+..++..+...+.+.|+.++|.+.++++.+.. ..+...+..+...|...|+.
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~ 786 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDY 786 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 89999999999999999999984 4556778889999999999999999999999863 34667888888999999999
Q ss_pred HHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 450 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
++|.++|+.+.+ ..+++...++.+..++...|+ .+|++.+++. ...| +...+..+...+...|++++|...++++
T Consensus 787 ~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 787 DKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999987 345678889999999999999 8899999874 3334 5567888889999999999999999999
Q ss_pred hCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 528 ~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 864 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 864 VNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999986
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=6e-31 Score=221.58 Aligned_cols=105 Identities=58% Similarity=1.069 Sum_probs=96.5
Q ss_pred ceeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHHHcCcccCCCccCCCchH-HH--------HHHHhhhhHHHHH
Q 005305 571 ACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDE-QE--------QRVLSYHSEKLAV 641 (703)
Q Consensus 571 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~-~~--------~~~~~~~~e~la~ 641 (703)
||||+++ |.|++||.+||+. ++..+|...||.|++..+.|++++ ++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899976 8999999999987 566777889999999999998887 55 5688999999999
Q ss_pred HhcccCCCCCCcEEEEecc-cccCcchHHHHHHhhhcCceEEEecCCcccccc
Q 005305 642 AFGLINTSDWTPLQIVQSH-RICCDCHNAIKLIAMVTGREIVVRDASRFHHFK 693 (703)
Q Consensus 642 ~~~l~~~~~~~~~~~~k~l-~~~~~~~~~~~~~s~~~~~~i~~~d~~~~h~~~ 693 (703)
+|||+++ ||+||+ |||+|||+++|+||++++|+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=1.6e-20 Score=225.04 Aligned_cols=492 Identities=14% Similarity=0.100 Sum_probs=278.9
Q ss_pred hhhhhhhccccccCCCCcccchhhcccccCccCCCCCcccH-----------------HHHHH-HHhcCChhHHHHHHHH
Q 005305 58 ECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGIC-----------------SQIEK-LVLNKRYREALELFEI 119 (703)
Q Consensus 58 ~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~-----------------~~li~-~~~~g~~~~A~~l~~~ 119 (703)
++.+...+...+.+.|+.++| .+.+++.....|+...+ -.... +.+.|++++|+..|+.
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A---~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~ 137 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGA---QKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDK 137 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHH---HHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 455666677777888899988 88888877765655432 22233 7788999999999998
Q ss_pred HHHcCCCCCChhh-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCc--
Q 005305 120 LEFEGGFDVGSST-YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL-- 196 (703)
Q Consensus 120 m~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~-- 196 (703)
+.... +|+... ...........++.++|.+.++.+++.. +.+...+..+...+...|+.++|++.|+++.....
T Consensus 138 ~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~ 214 (1157)
T PRK11447 138 LFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR 214 (1157)
T ss_pred HccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch
Confidence 87654 444321 1111222234588899999999988874 45667778888888889999999998887743111
Q ss_pred ----ccH-----------------HHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 005305 197 ----VSC-----------------NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255 (703)
Q Consensus 197 ----~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 255 (703)
..| ...+..+-......+|...+.++......|+... .....++...|++++|...++
T Consensus 215 ~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~ 293 (1157)
T PRK11447 215 DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQ 293 (1157)
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH-HHHHHHHHHCCCHHHHHHHHH
Confidence 011 1001111111112233333333322222222111 122334455677777777777
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCc-----ccHHHH------------HHHHHHcCCcHHHHH
Q 005305 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTT-----VGWNTI------------IAGYALHGYSEEALD 318 (703)
Q Consensus 256 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~-----~~~~~l------------i~~~~~~g~~~~A~~ 318 (703)
.+++.. +.+..++..|...|.+.|++++|+..|++..+.+. ..|..+ ...+.+.|++++|+.
T Consensus 294 ~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~ 372 (1157)
T PRK11447 294 QAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAER 372 (1157)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 776654 44566667777777777777777777766543211 112222 224556677777777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh----------------------
Q 005305 319 LYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF---------------------- 376 (703)
Q Consensus 319 l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~---------------------- 376 (703)
.|++..+.. +.+...+..+...+...|++++|.+.++.+++.... +...+..+...
T Consensus 373 ~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~ 450 (1157)
T PRK11447 373 LYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRR 450 (1157)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence 777776652 223445555666666777777777777777664322 23333444444
Q ss_pred --------------------HHhcCCHHHHHHHhhhcCc--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH
Q 005305 377 --------------------YSKWGRIEDARHVFDKMLC--K-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH 433 (703)
Q Consensus 377 --------------------y~k~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 433 (703)
|...|++++|.+.|++... | +...+..+...|.+.|++++|+..|+++.+. .|+.
T Consensus 451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~--~P~~ 528 (1157)
T PRK11447 451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ--KPND 528 (1157)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCC
Confidence 3444555555555554421 1 2333444445555555555555555555442 2221
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCch---------HHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHH
Q 005305 434 -VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA---------MHYACMIELLGREGLLDEAFALIRGAPFKTTKNM 503 (703)
Q Consensus 434 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~ 503 (703)
..+..+...+...++.++|...++.+... ...++. ..+..+.+.+...|+.++|.++++.-| ++...
T Consensus 529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--~~~~~ 605 (1157)
T PRK11447 529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRA-QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--PSTRI 605 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhCCch-hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--CCchH
Confidence 22222222334445555555555443210 011110 011123444556666666666666432 34445
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 504 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+..+...+...|+.++|+..++++++.+|+++..+..++.+|...|++++|.+.++...+.
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 5666777777788888888888888778887777778888888888888888777766543
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=2.8e-19 Score=214.30 Aligned_cols=343 Identities=14% Similarity=0.045 Sum_probs=220.6
Q ss_pred HhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHH
Q 005305 207 IDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286 (703)
Q Consensus 207 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 286 (703)
.+.|++++|+..|++...... .+...+..+...+...|++++|.+.++.+++.. +.+...+..+...|. .++.++|.
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~ 438 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKAL 438 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHH
Confidence 344444444444444443311 122233334444444444444444444444432 222333333444332 23344444
Q ss_pred HHHhhcCCCC------------cccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHhccCCHHHHHH
Q 005305 287 GVFDEMSEKT------------TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKM-DHFTFSMIIRICTRLASLEHAKQ 353 (703)
Q Consensus 287 ~~f~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~ 353 (703)
.+++.+.... ...+..+...+...|++++|++.|++..+. .| +...+..+...+...|++++|..
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444333210 111233444556678888888888887765 33 34455666777788888888888
Q ss_pred HHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCC----hh---------hHHHHHHHHHhcCCHHHHHHH
Q 005305 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN----VI---------SWNALIAGYGNHGRGEEAVEL 420 (703)
Q Consensus 354 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~----~~---------~~~~li~~~~~~g~~~~A~~l 420 (703)
.++.+++... .+......+...+.+.|+.++|...++.++... .. .+..+...+...|+.++|+.+
T Consensus 517 ~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 8888776532 244444555556677788888888887764321 11 122345667788889999888
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC
Q 005305 421 FEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP-FKT 499 (703)
Q Consensus 421 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p 499 (703)
++. ..++...+..+...+.+.|+.++|...|+.+.+. -+.+...+..++..|...|++++|++.++... ..|
T Consensus 596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 772 2334456677788899999999999999999872 34467888899999999999999999999754 344
Q ss_pred -CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc------hHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 500 -TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS------NYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 500 -~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
+...+..+..++...|++++|...++++++..|+++. .+..++.++...|++++|.+.+++..
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556777888888999999999999999987765443 55667899999999999999998875
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=1.6e-19 Score=183.52 Aligned_cols=457 Identities=14% Similarity=0.094 Sum_probs=364.1
Q ss_pred cccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 005305 82 ESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160 (703)
Q Consensus 82 ~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g 160 (703)
.+-|+..++. +.. -..+.. ..+.|++.+|.+.-...-+++ +.+......+-..+.+..+++...+--...++..
T Consensus 38 ~qq~~~t~~~--~~~-~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~ 112 (966)
T KOG4626|consen 38 LQQFNKTHEG--SDD-RLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN 112 (966)
T ss_pred HHHhccCCcc--chh-HHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhcc
Confidence 5556665554 222 344455 789999999999766555554 3344444444455666666666555444444432
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHH
Q 005305 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATM 237 (703)
Q Consensus 161 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 237 (703)
+.-..+|..+.+.+-..|++++|+..++.+.+ ..+..|-.+..++...|+.+.|...|.+..+- .|+.+...+-
T Consensus 113 -~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~ 189 (966)
T KOG4626|consen 113 -PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSD 189 (966)
T ss_pred -chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcc
Confidence 33456888899999999999999999998876 45678999999999999999999999988764 5655543332
Q ss_pred -HHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC---cccHHHHHHHHHHcCCc
Q 005305 238 -IRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT---TVGWNTIIAGYALHGYS 313 (703)
Q Consensus 238 -l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~ 313 (703)
....-..|++.+|..-+..+++.. +.-..+|+.|...+-..|++..|+.-|++...-| ...|-.|...|...+.+
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 233344688999999988888764 3446789999999999999999999999987644 34788889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhh
Q 005305 314 EEALDLYYEMRDSGVKMDH-FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392 (703)
Q Consensus 314 ~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 392 (703)
++|+..|.+.... +|+. ..+..+...|-..|.++.|...+++.+..... -...|+.|..++-..|++.+|...+.+
T Consensus 269 d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 269 DRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred hHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHH
Confidence 9999999887764 5654 56777777788999999999999999986422 467899999999999999999999998
Q ss_pred cCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc
Q 005305 393 MLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468 (703)
Q Consensus 393 m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 468 (703)
... .-..+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|..-+++..+ +.|+
T Consensus 346 aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~ 420 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPT 420 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCch
Confidence 743 3456888899999999999999999999887 67775 7889999999999999999999998865 7787
Q ss_pred -hHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 469 -AMHYACMIELLGREGLLDEAFALIRG-APFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 469 -~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
...|+.|...|-..|+.++|.+.+.+ +.+.|. ....+.|.+.+...|++.+|+..++..+++.|+.+.+|..++..+
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 57899999999999999999999987 466675 347889999999999999999999999999999999999998887
Q ss_pred HhCCChHHHH
Q 005305 546 NSSGKLKEAA 555 (703)
Q Consensus 546 ~~~g~~~~A~ 555 (703)
--..+|.+-.
T Consensus 501 q~vcdw~D~d 510 (966)
T KOG4626|consen 501 QIVCDWTDYD 510 (966)
T ss_pred HHHhcccchH
Confidence 7777776633
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=4.1e-17 Score=187.16 Aligned_cols=470 Identities=12% Similarity=0.006 Sum_probs=320.0
Q ss_pred CCCCcccchhhcccccCccCCCCCcc-cHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHH
Q 005305 71 KPNKIYTEELKESSLPDTQMKKPSAG-ICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIRE 148 (703)
Q Consensus 71 k~~~~~~aa~~~~~f~~~~~~~p~~~-~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~ 148 (703)
..|++.+| ...|.......|+.. .+..+.. |.+.|++++|+..+++..+.. |+...|..++... ++.++
T Consensus 56 ~~Gd~~~A---~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld---P~n~~~~~~La~i---~~~~k 126 (987)
T PRK09782 56 KNNDEATA---IREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH---PGDARLERSLAAI---PVEVK 126 (987)
T ss_pred hCCCHHHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHHHHHh---ccChh
Confidence 33899988 999998887777654 4555666 999999999999999998864 5555555545333 88889
Q ss_pred HHHHHHHHHHhCCCCCcchHHHHHHH--------HHhCCChHHHHHHHccCCCCC--ccc-HHHHHHHHHhCCChhHHHH
Q 005305 149 VKRVFSYMLSTGFEPDLYMRNRVLLM--------HVRCGMMIDARRLFDEMPERN--LVS-CNMIIAGMIDSGDYLEAFL 217 (703)
Q Consensus 149 a~~l~~~~~~~g~~~~~~~~~~Li~~--------y~~~g~~~~A~~~f~~m~~~d--~~~-~~~li~~~~~~g~~~~A~~ 217 (703)
|.++++.+.+.. +.+..++..+... |.+.+...++++ .....|+ ... .-.+...|.+.|++++|++
T Consensus 127 A~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 127 SVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 999999999875 4455666666665 877777777776 3333343 333 3344889999999999999
Q ss_pred HHHHhHHcCCCCChhhHHHHHHHHhc-CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-
Q 005305 218 LFLDLWEEFSDCGSRTFATMIRASAG-LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK- 295 (703)
Q Consensus 218 ~~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~- 295 (703)
++.++.+.+... ..-...+..++.. .++ +.+..++.. .+..++.++..+++.|.+.|+.++|.+++.+++.-
T Consensus 204 lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 999999886443 3335555556666 355 666666442 33468889999999999999999999998887531
Q ss_pred ----CcccH-------------------------------------------HH--------------------------
Q 005305 296 ----TTVGW-------------------------------------------NT-------------------------- 302 (703)
Q Consensus 296 ----~~~~~-------------------------------------------~~-------------------------- 302 (703)
+..+| ..
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 00000 00
Q ss_pred ----------H--------------HHHHHHcCCcHHHHHHHHHHHHC-C-CCCCHhhHHHHHHHHhcc-----------
Q 005305 303 ----------I--------------IAGYALHGYSEEALDLYYEMRDS-G-VKMDHFTFSMIIRICTRL----------- 345 (703)
Q Consensus 303 ----------l--------------i~~~~~~g~~~~A~~l~~~m~~~-g-~~pd~~t~~~ll~a~~~~----------- 345 (703)
+ -.-.++.|+.++|..+|+..... + -.++......++..+.+.
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 0 00123345566666666554331 0 111111111222222222
Q ss_pred ----------------------------------------------------CCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 005305 346 ----------------------------------------------------ASLEHAKQAHAGLVRHGFGLDIVANSAL 373 (703)
Q Consensus 346 ----------------------------------------------------~~~~~a~~~~~~~~~~g~~~~~~~~~~L 373 (703)
+..++|...+....... |+......+
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~l 515 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAV 515 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHH
Confidence 33444555444444432 333333333
Q ss_pred HhhHHhcCCHHHHHHHhhhcCc--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHH
Q 005305 374 VDFYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSE 450 (703)
Q Consensus 374 i~~y~k~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~ 450 (703)
...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...|++..+. .|+. ..+..+.......|+++
T Consensus 516 A~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 516 AYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHH
Confidence 4444577888888888876632 34445666677778888888888888888774 3444 33333344555668889
Q ss_pred HHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 005305 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTT-KNMWAALLTACRVNGNLELGKFAAEKLY 528 (703)
Q Consensus 451 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 528 (703)
+|...++...+ +.|+...|..+..++.+.|+.++|++.+++. ...|+ ...+..+..++...|+.++|+..+++++
T Consensus 594 eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99888888875 4567888888888999999999999998874 44554 5577777778889999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 529 GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 529 ~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
+.+|+++..+..++.+|...|++++|...+++..+..
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998887544
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=2.2e-18 Score=175.37 Aligned_cols=422 Identities=14% Similarity=0.135 Sum_probs=336.7
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhC
Q 005305 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDS 209 (703)
Q Consensus 133 ~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~ 209 (703)
...|..-..+.|++++|++--..+-... +.+....-.+-..+....+.+....--..... .-..+|..+...+-..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 3444555567788988887544433322 22222222233455566666554332221111 2346788899999999
Q ss_pred CChhHHHHHHHHhHHcCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHH-HHHHHHHHHHhCCCHHHHHH
Q 005305 210 GDYLEAFLLFLDLWEEFSDC-GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF-VSCALIDMYSKCGSIEDAQG 287 (703)
Q Consensus 210 g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~~ 287 (703)
|+.++|+.+|+.|.+. +| ....|..+..++...|+.+.|.+.+.+.++.. |+.. +.+.+.......|++++|..
T Consensus 130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999875 44 45689999999999999999999999998764 5543 44455666666899999999
Q ss_pred HHhhcCC--C-CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 005305 288 VFDEMSE--K-TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH-FTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363 (703)
Q Consensus 288 ~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 363 (703)
.+.+..+ | -.+.|+.|...+-.+|+...|+.-|++.... .|+- ..|..+-..+...+.++.|...+..+.....
T Consensus 206 cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp 283 (966)
T KOG4626|consen 206 CYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP 283 (966)
T ss_pred HHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 9887654 3 3568999999999999999999999998764 5553 4677888888888899999988888877532
Q ss_pred CCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHH
Q 005305 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KN-VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAV 439 (703)
Q Consensus 364 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 439 (703)
....++..|.-.|-..|.+|.|...+++..+ |+ ...|+.|..++...|+..+|.+.+.+.+. ..|+. ...+.|
T Consensus 284 -n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NL 360 (966)
T KOG4626|consen 284 -NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNL 360 (966)
T ss_pred -cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHH
Confidence 2466778888899999999999999999854 43 56899999999999999999999999987 57776 788999
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCH-HHHHHHHHHHHHcCC
Q 005305 440 LSACSRSGLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLLDEAFALIRG-APFKTTK-NMWAALLTACRVNGN 516 (703)
Q Consensus 440 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~-~~~~~ll~a~~~~g~ 516 (703)
..++...|.+++|..+|....+ +.|. ....+.|...|-..|++++|..-+++ +.++|+. ..++.+...+...|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 9999999999999999998866 4454 56788999999999999999999987 5778875 489999999999999
Q ss_pred hhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 005305 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567 (703)
Q Consensus 517 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 567 (703)
++.|.+.+.+++..+|.-..++..|+.+|..+|+..+|..-+++..+-...
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999999998765443
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=6.3e-17 Score=185.63 Aligned_cols=445 Identities=11% Similarity=-0.001 Sum_probs=306.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHH
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 183 (703)
+...|++++|+..|+...+.. |-+..++..+..++...|+.++|+...+..++.. +.|...+..| ..+ ++.++
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~k 126 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVK 126 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChh
Confidence 455699999999999999875 5567888999999999999999999999999864 3334444444 222 89999
Q ss_pred HHHHHccCCC--CC-cccHHHHHHH--------HHhCCChhHHHHHHHHhHHcCCCCChhhHHHH-HHHHhcCCChHHHH
Q 005305 184 ARRLFDEMPE--RN-LVSCNMIIAG--------MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATM-IRASAGLELISVGK 251 (703)
Q Consensus 184 A~~~f~~m~~--~d-~~~~~~li~~--------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~~~~~~a~ 251 (703)
|..+++++.. |+ ...+..+... |.+.+...+++ + .......|+..+.... .+.+...++++++.
T Consensus 127 A~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 127 SVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQL---N-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHH---H-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 9999999865 33 3344444443 66664444444 4 4344445556655555 89999999999999
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHh-CCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCC-
Q 005305 252 QLHSCALKMGFGDNVFVSCALIDMYSK-CGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK- 329 (703)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~- 329 (703)
.++..+.+.+ +.+......|..+|.. .++ +.+..++....+.|+..+..+...|.+.|+.++|.++++++...-..
T Consensus 203 ~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 203 TLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 9999999997 4556667778888888 477 99999988765678889999999999999999999999887443111
Q ss_pred CCHhhHHHHH------------------------------H---------------------------------------
Q 005305 330 MDHFTFSMII------------------------------R--------------------------------------- 340 (703)
Q Consensus 330 pd~~t~~~ll------------------------------~--------------------------------------- 340 (703)
|+..++.-.+ .
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 1111111000 0
Q ss_pred ------------------------HHhccCCHHHHHHHHHHHHHc-C-CCCchHHHHHHHhhHHhcCC------------
Q 005305 341 ------------------------ICTRLASLEHAKQAHAGLVRH-G-FGLDIVANSALVDFYSKWGR------------ 382 (703)
Q Consensus 341 ------------------------a~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~Li~~y~k~g~------------ 382 (703)
.....|+.++|.+++...... + -..+....+-|+..|.+.+.
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 011234444555555544431 0 11123344455555555544
Q ss_pred ---------------------------------------------------HHHHHHHhhhcCcCChhhHHHHHHHH--H
Q 005305 383 ---------------------------------------------------IEDARHVFDKMLCKNVISWNALIAGY--G 409 (703)
Q Consensus 383 ---------------------------------------------------~~~A~~~f~~m~~~~~~~~~~li~~~--~ 409 (703)
.++|...|.+.....+..|+.+..++ .
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~ 520 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAY 520 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 22333333332211112233333333 4
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 005305 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 410 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 489 (703)
..|++++|+..|+++... .|+...+..+..++.+.|+.++|..+++...+. . ++....+..+...+.+.|++++|.
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHH
Confidence 677788888888776543 444445556666777788888888888877662 1 223333333334444569999999
Q ss_pred HHHHh-CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 490 ALIRG-APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 490 ~~~~~-m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
..+++ +...|+...|..+...+.+.|+.++|+..++++++++|+++..+..++.++...|++++|.+.+++..+..
T Consensus 597 ~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 597 NDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99887 45578888999999999999999999999999999999999999999999999999999999999887654
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.84 E-value=7.7e-17 Score=181.58 Aligned_cols=416 Identities=12% Similarity=0.024 Sum_probs=264.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCC
Q 005305 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGD 211 (703)
Q Consensus 135 ~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~ 211 (703)
.....+...|+++.|...+...++. .|+...|..+..+|.+.|++++|+..++...+ .+...|..+..+|...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 3344455566666666666666543 34555566666666666666666666655443 233456666666666666
Q ss_pred hhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhh
Q 005305 212 YLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291 (703)
Q Consensus 212 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 291 (703)
+++|+.-|......+...+. ....++..... ..+........+.. +.+...+..+.. |........+..-++.
T Consensus 210 ~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 66666666544332111111 11111111100 11111122222221 122222222222 2111111111111221
Q ss_pred cCCCCc---ccHHHHHHHH---HHcCCcHHHHHHHHHHHHCC-CCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 005305 292 MSEKTT---VGWNTIIAGY---ALHGYSEEALDLYYEMRDSG-VKMD-HFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363 (703)
Q Consensus 292 m~~~~~---~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g-~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 363 (703)
..+-+. ..+..+...+ ...+++++|++.|++..+.+ ..|+ ...+..+...+...|+++.|...++.+++...
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P 362 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP 362 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 111111 1111111111 23467889999999888764 2333 34566666677788999999999999887642
Q ss_pred CCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHH
Q 005305 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAV 439 (703)
Q Consensus 364 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 439 (703)
.+...+..+...|...|++++|...|+.... .+...|..+...|...|++++|+..|++.++. .|+ ...+..+
T Consensus 363 -~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~l 439 (615)
T TIGR00990 363 -RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQL 439 (615)
T ss_pred -CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHH
Confidence 2456778888889999999999999988743 45678888999999999999999999999874 555 4667777
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCH-------H-HHHHHHHH
Q 005305 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKTTK-------N-MWAALLTA 510 (703)
Q Consensus 440 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~-------~-~~~~ll~a 510 (703)
..++.+.|++++|...|+...+ ..+.+...|+.+..++...|++++|.+.|++ +...|+. . .++..+..
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 7888999999999999999877 3445578889999999999999999999987 3333321 1 12222233
Q ss_pred HHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 511 CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 511 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+...|++++|...++++++++|++...+..++.+|.+.|++++|.+.+++..+.
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345699999999999999999999889999999999999999999999988653
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=2.6e-18 Score=183.54 Aligned_cols=305 Identities=12% Similarity=0.082 Sum_probs=193.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---cchHHHHHHHHHhCCC
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD---LYMRNRVLLMHVRCGM 180 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~---~~~~~~Li~~y~~~g~ 180 (703)
+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 666677777777777777654 34455667777777777777777777777765431111 1345556666666666
Q ss_pred hHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 005305 181 MIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257 (703)
Q Consensus 181 ~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 257 (703)
+++|+++|+++.+ .+..+++.++..+.+.|++++|++.|+.+.+.+..++..
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------------- 177 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV------------------------- 177 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-------------------------
Confidence 6666666666654 344556666666666666666666666665433221110
Q ss_pred HHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhh
Q 005305 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334 (703)
Q Consensus 258 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 334 (703)
.....+..+...|.+.|++++|.+.|+++.+. +...+..+...|.+.|++++|.++|+++.+.+......+
T Consensus 178 ------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 251 (389)
T PRK11788 178 ------EIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEV 251 (389)
T ss_pred ------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHH
Confidence 00123345666667777777777777766432 344566677777788888888888887776532222345
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC--cCChhhHHHHHHHHHh--
Q 005305 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML--CKNVISWNALIAGYGN-- 410 (703)
Q Consensus 335 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~-- 410 (703)
+..+..++...|++++|...++.+.+.. |+..++..++..|.+.|++++|..+|+++. .|+..+++.++..+..
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~ 329 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEA 329 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhcc
Confidence 6666777777777777777777776653 344455777777788888888888877663 3666777777766654
Q ss_pred -cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCH
Q 005305 411 -HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449 (703)
Q Consensus 411 -~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 449 (703)
.|+.++++.+|++|.+.+++|++. .+|.+.|..
T Consensus 330 ~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 330 EEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred CCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 457778888888888777666655 336665543
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=1.1e-17 Score=178.79 Aligned_cols=220 Identities=15% Similarity=0.165 Sum_probs=105.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCH----hhHHHHHHH
Q 005305 269 SCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH----FTFSMIIRI 341 (703)
Q Consensus 269 ~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a 341 (703)
+..+...|.+.|++++|.++|+++.+ .+..+++.++..+.+.|++++|++.|+++.+.+..++. ..+..+...
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 34444445555555555555554433 22334444555555555555555555555443322111 112233334
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc--CC--hhhHHHHHHHHHhcCCHHHH
Q 005305 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KN--VISWNALIAGYGNHGRGEEA 417 (703)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~~--~~~~~~li~~~~~~g~~~~A 417 (703)
+...++++.|...+..+.+.. +.+...+..+...|.+.|++++|.+.|+++.. |+ ...++.++.+|...|+.++|
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 190 ALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 444555555555555554432 11233444455555555555555555555532 21 22345555555555555555
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHh---cCChHHHHHHHHh
Q 005305 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR---EGLLDEAFALIRG 494 (703)
Q Consensus 418 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~ 494 (703)
...++++.+. .|+...+..+...+.+.|++++|..+++.+.+ ..|+...+..+++.+.. .|+.++|..++++
T Consensus 269 ~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~---~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 269 LEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLR---RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 5555555543 34444445555555555555555555555544 13555555555544442 3355555555544
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.81 E-value=1.6e-15 Score=174.19 Aligned_cols=401 Identities=11% Similarity=0.003 Sum_probs=196.4
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHH
Q 005305 131 STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMI 207 (703)
Q Consensus 131 ~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~ 207 (703)
....-.+....-.|+.++|.+++....... +.+...+..+...+.+.|++++|.++|++..+ .+...+..+...+.
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~ 94 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA 94 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 333344444455555555555555554321 22333455555555555666666655555322 23344555555566
Q ss_pred hCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 005305 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287 (703)
Q Consensus 208 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 287 (703)
..|++++|+..+++..+... .+.. +..+..++...|+.++|...+..+++.. +.+..++..+..++.+.|..+.|.+
T Consensus 95 ~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 66666666666666654411 1222 5555555556666666666666666654 4455555666777777777777777
Q ss_pred HHhhcCCCCcc--------cHHHHHHHHH-----HcCCc---HHHHHHHHHHHHC-CCCCCHh-hHH----HHHHHHhcc
Q 005305 288 VFDEMSEKTTV--------GWNTIIAGYA-----LHGYS---EEALDLYYEMRDS-GVKMDHF-TFS----MIIRICTRL 345 (703)
Q Consensus 288 ~f~~m~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-g~~pd~~-t~~----~ll~a~~~~ 345 (703)
.++.... ++. ....++..+. ..+++ ++|++.++.+.+. ...|+.. .+. ..+.++...
T Consensus 172 ~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 172 AIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 7776654 211 1111111111 11223 5677777777643 1222221 111 112334455
Q ss_pred CCHHHHHHHHHHHHHcCCC-CchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCC-------hhhHHHHHHHHHhcCCHHHH
Q 005305 346 ASLEHAKQAHAGLVRHGFG-LDIVANSALVDFYSKWGRIEDARHVFDKMLCKN-------VISWNALIAGYGNHGRGEEA 417 (703)
Q Consensus 346 ~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~-------~~~~~~li~~~~~~g~~~~A 417 (703)
++.++|...++.+.+.+.+ |+ .....+...|...|++++|+..|+++...+ ...+..+..++...|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 6677777777776665422 21 122224556666777777777766653221 12344445566666777777
Q ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc---hHHHHHHHHHHHhcCChHHHHHHHHh
Q 005305 418 VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR---AMHYACMIELLGREGLLDEAFALIRG 494 (703)
Q Consensus 418 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~ 494 (703)
+.+++++.+. .|..... +. . ..-.|+ ...+..+..++...|++++|++.+++
T Consensus 330 ~~~l~~~~~~--~P~~~~~-------------------~~-~---~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 330 LTVTAHTINN--SPPFLRL-------------------YG-S---PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred HHHHHHHhhc--CCceEee-------------------cC-C---CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777766653 2211000 00 0 000122 11223344444444555555554444
Q ss_pred C-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 495 A-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 495 m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
+ ...| +...+..+...+...|+.++|+..++++++++|+++..+..++..+.+.|+|++|..+++.+.
T Consensus 385 al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll 454 (765)
T PRK10049 385 LAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV 454 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2 1112 233444444444455555555555555555555555555555555555555555555554444
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=6.1e-16 Score=173.77 Aligned_cols=351 Identities=12% Similarity=0.010 Sum_probs=263.3
Q ss_pred hCCChHHHHHHHccCCC------CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHH
Q 005305 177 RCGMMIDARRLFDEMPE------RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250 (703)
Q Consensus 177 ~~g~~~~A~~~f~~m~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 250 (703)
+..+++.-.-.|..-++ .+....-.++..+.+.|++++|+.+++........+ ...+..++.+....|+++.|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A 95 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAV 95 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHH
Confidence 44555555555655554 122233446677788899999999988887764443 33444445566678999999
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCC
Q 005305 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSG 327 (703)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 327 (703)
...++.+++.. +.+...+..+...|.+.|++++|...|++... .+...|..+...+.+.|++++|...++++....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999988875 56677888888999999999999999988764 345678888888999999999999998887653
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHH
Q 005305 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNAL 404 (703)
Q Consensus 328 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~l 404 (703)
..+ ...+.. +..+...|++++|...+..+++....++......+...+.+.|+.++|...|++... .+...+..+
T Consensus 175 P~~-~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 PPR-GDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred CCC-HHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 222 222222 334677899999999998887765444445555667788899999999999988743 356678888
Q ss_pred HHHHHhcCCHHH----HHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHH
Q 005305 405 IAGYGNHGRGEE----AVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479 (703)
Q Consensus 405 i~~~~~~g~~~~----A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 479 (703)
...|...|++++ |+..|++..+. .|+. ..+..+...+...|++++|...++...+. -+.+...+..+...|
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l 328 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 889999999885 89999998874 5654 67888888999999999999999998762 233456677788899
Q ss_pred HhcCChHHHHHHHHhCC-CCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHhCCCCCCc
Q 005305 480 GREGLLDEAFALIRGAP-FKTTKNMW-AALLTACRVNGNLELGKFAAEKLYGMEPEKL 535 (703)
Q Consensus 480 ~~~g~~~~A~~~~~~m~-~~p~~~~~-~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 535 (703)
.+.|++++|.+.++++. ..|+...+ ..+..++...|+.++|...++++++..|++.
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 99999999999998753 45665443 3456678899999999999999999998853
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.78 E-value=2.3e-15 Score=172.72 Aligned_cols=371 Identities=11% Similarity=0.038 Sum_probs=237.1
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCC-ChhhHHHHH
Q 005305 163 PDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC-GSRTFATMI 238 (703)
Q Consensus 163 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll 238 (703)
.+.....-.+......|+.++|++++.+... .+...+..+...+...|++++|+.+|++.... .| +......+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3444445566667777888888888877653 23334777778888888888888888887654 33 344555666
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CcccHHHHHHHHHHcCCcHH
Q 005305 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK---TTVGWNTIIAGYALHGYSEE 315 (703)
Q Consensus 239 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~ 315 (703)
..+...|++++|...++.+++.. +.+.. +..+..+|...|+.++|...++++.+. +...+..+...+...|..++
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence 67777888888888888877763 45555 777777788888888888888777542 34455566667777777787
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCH---HHHHHHhhh
Q 005305 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI---EDARHVFDK 392 (703)
Q Consensus 316 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~---~~A~~~f~~ 392 (703)
|+..+++... .|+.... +.. ..+ ... +...+.......+++ ++|.+.++.
T Consensus 169 Al~~l~~~~~---~p~~~~~---l~~-------~~~----~~~----------~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 169 ALGAIDDANL---TPAEKRD---LEA-------DAA----AEL----------VRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred HHHHHHhCCC---CHHHHHH---HHH-------HHH----HHH----------HHhhcccccChhHHHHHHHHHHHHHHH
Confidence 8777765442 3331000 000 000 000 000011111112222 555555555
Q ss_pred cCc---CChhh---H----HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 393 MLC---KNVIS---W----NALIAGYGNHGRGEEAVELFEQMLLNGMR-PNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 393 m~~---~~~~~---~----~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
+.. .++.. + ...+..+...|++++|+..|+++.+.+.. |+..- ..+..++...|++++|...|+.+.+
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 531 11111 1 11123445667788888888887775432 43321 2245577778888888888887765
Q ss_pred hcCCCC--chHHHHHHHHHHHhcCChHHHHHHHHhCCC--------------CCCH---HHHHHHHHHHHHcCChhHHHH
Q 005305 462 DHKIKP--RAMHYACMIELLGREGLLDEAFALIRGAPF--------------KTTK---NMWAALLTACRVNGNLELGKF 522 (703)
Q Consensus 462 ~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------~p~~---~~~~~ll~a~~~~g~~~~a~~ 522 (703)
.....+ .......+..++...|++++|.+.++++.. .|+. ..+..+...+...|+.++|+.
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 211111 134455666677788888888888776532 1232 244566778889999999999
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 523 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
.++++....|+++..+..++.++...|+.++|.+.+++..+..
T Consensus 381 ~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 381 RARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999988754
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=6.1e-15 Score=166.24 Aligned_cols=434 Identities=11% Similarity=-0.043 Sum_probs=296.2
Q ss_pred HHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHh
Q 005305 99 SQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR 177 (703)
Q Consensus 99 ~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~ 177 (703)
...-. +.+.|++++|+..|++.... .|+...|..+..++...|++++|.+.+...++.. +.+...+..+...|..
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34445 88999999999999999874 5788889999999999999999999999999864 4456688889999999
Q ss_pred CCChHHHHHHHccCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHH
Q 005305 178 CGMMIDARRLFDEMPER---NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLH 254 (703)
Q Consensus 178 ~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 254 (703)
.|++++|+.-|...... +......++.-+.. ..+........+.. .++...+..+.. +...........-+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL 280 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence 99999999877654321 11111112211111 12222233222221 111112221111 11111111111111
Q ss_pred HHHHHhCCCCcHHHHHHHHHHH------HhCCCHHHHHHHHhhcCCC------CcccHHHHHHHHHHcCCcHHHHHHHHH
Q 005305 255 SCALKMGFGDNVFVSCALIDMY------SKCGSIEDAQGVFDEMSEK------TTVGWNTIIAGYALHGYSEEALDLYYE 322 (703)
Q Consensus 255 ~~~~~~g~~~~~~~~~~Li~~y------~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~ 322 (703)
....+ .+......++..+ ...+++++|.+.|+...+. +...|+.+...+...|++++|+..|++
T Consensus 281 ~~~~~----~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 281 EDSNE----LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hcccc----cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11110 1111111111111 2347889999999887642 344688888888899999999999999
Q ss_pred HHHCCCCCC-HhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CCh
Q 005305 323 MRDSGVKMD-HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNV 398 (703)
Q Consensus 323 m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~ 398 (703)
..+. .|+ ...|..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++... .+.
T Consensus 357 al~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 357 SIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 8875 444 4577778888889999999999999998864 33678888999999999999999999998843 356
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc--h------
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR--A------ 469 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~------ 469 (703)
..|..+...+.+.|++++|+..|++.++. .|+ ...+..+..++...|++++|...|+...+. .|+ .
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~ 508 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVL 508 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHH
Confidence 67888888999999999999999998874 454 577888888999999999999999998762 222 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHh-CCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 005305 470 MHYACMIELLGREGLLDEAFALIRG-APFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 547 (703)
..++.....+...|++++|.+++++ +...|+ ...+..+...+...|++++|...++++.++.+..... ..
T Consensus 509 ~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~--------~~ 580 (615)
T TIGR00990 509 PLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL--------VQ 580 (615)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH--------HH
Confidence 1223333344557999999999987 445554 4578889999999999999999999999887763321 23
Q ss_pred CCChHHHHHHHHHHH
Q 005305 548 SGKLKEAAEVIRTLR 562 (703)
Q Consensus 548 ~g~~~~A~~~~~~m~ 562 (703)
+..+.+|.++....+
T Consensus 581 a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 581 AISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334555555544443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=3.2e-14 Score=160.32 Aligned_cols=429 Identities=10% Similarity=-0.002 Sum_probs=300.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCCh--hhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 005305 98 CSQIEKLVLNKRYREALELFEILEFEGGFDVGS--STYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMH 175 (703)
Q Consensus 98 ~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y 175 (703)
|...|-..++|++..|++.|++..+.. |+. ..+ .++..+...|+.++|...++..+.. -+........+...|
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~---P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly 112 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG---PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC---ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHH
Confidence 555555778888888888888887754 443 233 7777777888888888888887711 111222233335577
Q ss_pred HhCCChHHHHHHHccCCCC---CcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHH
Q 005305 176 VRCGMMIDARRLFDEMPER---NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQ 252 (703)
Q Consensus 176 ~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 252 (703)
...|++++|+++|+++.+. |...+..++..|.+.++.++|++.+.++... .|+...+..++..+...++..+|.+
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 7888888888888888652 3455667777888888888888888888665 4455555444444444556656888
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-CcccHHH----HHHHHH---------HcCC---cHH
Q 005305 253 LHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWNT----IIAGYA---------LHGY---SEE 315 (703)
Q Consensus 253 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~----li~~~~---------~~g~---~~~ 315 (703)
.++.+++.. +.+...+..++....+.|-...|.++..+-+.- +...+.- .+.-.+ ..++ .+.
T Consensus 191 ~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 191 ASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 888888875 667778888888888888888888887765531 0111000 000111 1122 234
Q ss_pred HHHHHHHHHHC-CCCCCH-h----hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHH
Q 005305 316 ALDLYYEMRDS-GVKMDH-F----TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389 (703)
Q Consensus 316 A~~l~~~m~~~-g~~pd~-~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 389 (703)
|+.-++.+... +-.|.. . ...-.+-++...++..++...++.+...+.+....+-.++.++|...+++++|..+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 55555555441 222322 1 22345567788899999999999999888766677889999999999999999999
Q ss_pred hhhcCcC---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------------CcCHHH-HHHHHHHHHcc
Q 005305 390 FDKMLCK---------NVISWNALIAGYGNHGRGEEAVELFEQMLLNGM-------------RPNHVT-FLAVLSACSRS 446 (703)
Q Consensus 390 f~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------------~p~~~t-~~~ll~a~~~~ 446 (703)
|..+... +......|.-+|...+++++|..+++++.+.-. .||-.. +..+...+.-.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~ 429 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL 429 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence 9987332 233346788899999999999999999987311 223333 33445667888
Q ss_pred CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChhHHHHHH
Q 005305 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP-FKTT-KNMWAALLTACRVNGNLELGKFAA 524 (703)
Q Consensus 447 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~a~~~~g~~~~a~~~~ 524 (703)
|++.+|.+.++.+.. .-+-|......+.+.+...|++.+|++.++... ..|+ ..+......+....+++++|..+.
T Consensus 430 gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 430 NDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999976 456678888899999999999999999997642 3554 446667777778889999999999
Q ss_pred HHHhCCCCCCcc
Q 005305 525 EKLYGMEPEKLS 536 (703)
Q Consensus 525 ~~~~~~~p~~~~ 536 (703)
+.+.+..|+++.
T Consensus 508 ~~l~~~~Pe~~~ 519 (822)
T PRK14574 508 DDVISRSPEDIP 519 (822)
T ss_pred HHHHhhCCCchh
Confidence 999999999864
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=5.4e-15 Score=166.14 Aligned_cols=321 Identities=12% Similarity=0.010 Sum_probs=234.6
Q ss_pred HHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhC
Q 005305 100 QIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC 178 (703)
Q Consensus 100 ~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~ 178 (703)
.++. +.+.|++++|+.+++...... +-+...+..+..++...|++++|.+.++.+++.. +.+...+..+...|...
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 3445 888999999999999888764 3344555666667777899999999999998864 45566778888888999
Q ss_pred CChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 005305 179 GMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255 (703)
Q Consensus 179 g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 255 (703)
|++++|...|++... .+...|..+...+...|++++|...++.+......+.. .+.. +..+...|++++|...+.
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIAT-CLSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHH-HHHHHHcCCHHHHHHHHH
Confidence 999999999887755 34667888888899999999999999887665333222 2222 234677788888888888
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHH----HHHHHHHHHHCCC
Q 005305 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEE----ALDLYYEMRDSGV 328 (703)
Q Consensus 256 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~ 328 (703)
.+++....++......+...+.+.|++++|...|++... .+...+..+...|.+.|++++ |+..|++..+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 877664334444555566778888888888888887654 245567778888888888875 788888887652
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC--cCChhh-HHHHH
Q 005305 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML--CKNVIS-WNALI 405 (703)
Q Consensus 329 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~~~-~~~li 405 (703)
+.+...+..+...+...|++++|...++.+++.... +..+...+...|.+.|++++|...|+.+. .|+... +..+.
T Consensus 281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a 359 (656)
T PRK15174 281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAA 359 (656)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 234556777777788888888888888888876432 45566777888888888888888888774 333323 33345
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 005305 406 AGYGNHGRGEEAVELFEQMLLN 427 (703)
Q Consensus 406 ~~~~~~g~~~~A~~l~~~m~~~ 427 (703)
..+...|+.++|+..|++..+.
T Consensus 360 ~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 6677888888888888887764
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=1.6e-13 Score=154.77 Aligned_cols=425 Identities=12% Similarity=0.048 Sum_probs=310.9
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCCc--chHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHH---HHHHH
Q 005305 133 YDALISACIGLRSIREVKRVFSYMLSTGFEPDL--YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMI---IAGMI 207 (703)
Q Consensus 133 ~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~--~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~l---i~~~~ 207 (703)
|...+. ..+.|+++.|...+.++++.. |+. .++ .++..+...|+.++|+..+++...|+...+..+ ...|.
T Consensus 38 y~~aii-~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLII-RARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred HHHHHH-HHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 444443 458899999999999999864 443 344 888999999999999999999988755555443 44677
Q ss_pred hCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHH
Q 005305 208 DSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQG 287 (703)
Q Consensus 208 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 287 (703)
..|++++|+++|+++.+.... |...+..++..+...++.++|.+.+..+.+.. |+...+-.++..+...++..+|.+
T Consensus 114 ~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHH
Confidence 889999999999999886433 35666677888899999999999999988764 555555556666655677767999
Q ss_pred HHhhcCCC---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhh------HHHHHHHH-----hccCC---HHH
Q 005305 288 VFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT------FSMIIRIC-----TRLAS---LEH 350 (703)
Q Consensus 288 ~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t------~~~ll~a~-----~~~~~---~~~ 350 (703)
.++++.+. +...+..+..+..+.|-...|+++..+-... +.|...- ....+..- ....+ .+.
T Consensus 191 ~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ 269 (822)
T PRK14574 191 ASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADK 269 (822)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 99998753 4556778888899999999998776653211 1111100 11111100 01112 344
Q ss_pred HHHHHHHHHHc-CCCC-c-hHHHHHH---HhhHHhcCCHHHHHHHhhhcCcCC--h--hhHHHHHHHHHhcCCHHHHHHH
Q 005305 351 AKQAHAGLVRH-GFGL-D-IVANSAL---VDFYSKWGRIEDARHVFDKMLCKN--V--ISWNALIAGYGNHGRGEEAVEL 420 (703)
Q Consensus 351 a~~~~~~~~~~-g~~~-~-~~~~~~L---i~~y~k~g~~~~A~~~f~~m~~~~--~--~~~~~li~~~~~~g~~~~A~~l 420 (703)
+..-++.+... +-.| . .....+. +-++.+.|+..++.+.|+.+.... + ..--++..+|...+++++|+.+
T Consensus 270 ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l 349 (822)
T PRK14574 270 ALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPI 349 (822)
T ss_pred HHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 45555555441 2112 2 1223333 445678899999999999997432 2 2456678999999999999999
Q ss_pred HHHHHHcCC-----CcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcC----------CCCc---hHHHHHHHHHHHhc
Q 005305 421 FEQMLLNGM-----RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK----------IKPR---AMHYACMIELLGRE 482 (703)
Q Consensus 421 ~~~m~~~g~-----~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~ 482 (703)
|+++..... .++......|..++..++++++|..+++.+.+... -.|+ ...+..++..+...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~ 429 (822)
T PRK14574 350 LSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVAL 429 (822)
T ss_pred HHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHc
Confidence 999976431 22334457888999999999999999999987211 0122 23445577888999
Q ss_pred CChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 483 GLLDEAFALIRGAP-F-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 483 g~~~~A~~~~~~m~-~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
|++.+|++.++++. . +-|...+..+...+...|.+.+|+..++.+..++|++..+...++..+...|+|++|.++.+.
T Consensus 430 gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 430 NDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999862 2 347778899999999999999999999999999999999999999999999999999999988
Q ss_pred HHhCC
Q 005305 561 LRRKG 565 (703)
Q Consensus 561 m~~~~ 565 (703)
..+..
T Consensus 510 l~~~~ 514 (822)
T PRK14574 510 VISRS 514 (822)
T ss_pred HHhhC
Confidence 76543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.69 E-value=4.3e-13 Score=144.65 Aligned_cols=479 Identities=13% Similarity=0.079 Sum_probs=331.0
Q ss_pred cccchhhcccccCccCCCCCcccHHHHHH--HHhcCChhHHHHHHHHHHHcCC-CCCChhhHHHHHHHHhccCChHHHHH
Q 005305 75 IYTEELKESSLPDTQMKKPSAGICSQIEK--LVLNKRYREALELFEILEFEGG-FDVGSSTYDALISACIGLRSIREVKR 151 (703)
Q Consensus 75 ~~~aa~~~~~f~~~~~~~p~~~~~~~li~--~~~~g~~~~A~~l~~~m~~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~ 151 (703)
++.| .+.|.......|+.+..-.--+ ....+++..|+.+|........ .+||..+ .+-..+.+.++.+.|+.
T Consensus 146 ~~~A---~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDA---DAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALL 220 (1018)
T ss_pred HHHH---HHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHH
Confidence 3555 6667666655555443322222 4566889999999998765321 3455432 22344567888889999
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHhCC---ChHHHHHHHccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHhHHc
Q 005305 152 VFSYMLSTGFEPDLYMRNRVLLMHVRCG---MMIDARRLFDEMP---ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE 225 (703)
Q Consensus 152 l~~~~~~~g~~~~~~~~~~Li~~y~~~g---~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 225 (703)
.|....+.. +.++.++..|--+-.... .+..+..++...- ..|++..+.|.+-|.-.|+++.+..+...+...
T Consensus 221 a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 998888653 122222222222212222 3344444444332 267888999999999999999999999888764
Q ss_pred CCC--CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CcccH
Q 005305 226 FSD--CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK---TTVGW 300 (703)
Q Consensus 226 g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~ 300 (703)
... .-...|-.+.+++-..|++++|.+++-+..+..-...+..+-.|..+|.+.|+++.|...|+.+... +..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 311 1234577888999999999999999988887652222445567899999999999999999988643 44556
Q ss_pred HHHHHHHHHcC----CcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH----HcCCCCchHHHHH
Q 005305 301 NTIIAGYALHG----YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV----RHGFGLDIVANSA 372 (703)
Q Consensus 301 ~~li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~ 372 (703)
..+...|+..+ ..++|..++.+..+.- +.|...|..+...+-. +++......+..+. ..+-.+.+.+.|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 66666676664 4567777777666542 3455566666555543 44444466655544 3455577899999
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCc-------CChh-------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHH-HH
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLC-------KNVI-------SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT-FL 437 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~-------~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~ 437 (703)
+...+...|++++|...|..... +|.. -|| +...+-..++++.|.++|...... .|+.++ |.
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilke--hp~YId~yl 534 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKE--HPGYIDAYL 534 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHH
Confidence 99999999999999999987632 2221 233 445566677899999999999885 677643 44
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh----CCCCCCHHHHHHHHHHHHH
Q 005305 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG----APFKTTKNMWAALLTACRV 513 (703)
Q Consensus 438 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~p~~~~~~~ll~a~~~ 513 (703)
.++..-...+...+|...+..... ....++..++.+.+.+.+...+..|.+-|+. ....+|..+.-+|.+.|.+
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 444333345678899999988876 4556666777778788888888888774443 3335788888788776642
Q ss_pred ------------cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 514 ------------NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 514 ------------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
.+..+.|.+.+.+++..+|.|..+-+-++-+++..|+|.+|..+|.+.++...
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 24567899999999999999988888899999999999999999999998765
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.3e-13 Score=148.44 Aligned_cols=482 Identities=15% Similarity=0.077 Sum_probs=303.1
Q ss_pred cccCCCCcccchhhcccccCccCC----CCCcccHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHh
Q 005305 68 PRPKPNKIYTEELKESSLPDTQMK----KPSAGICSQIEK--LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACI 141 (703)
Q Consensus 68 ~y~k~~~~~~aa~~~~~f~~~~~~----~p~~~~~~~li~--~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~ 141 (703)
.|.| +++..| ..+|...... +||+. ..|+ +.+.|+.+.|+..|.+..+.+ |.+..++..|--.-.
T Consensus 174 ~ynk-kdY~~a---l~yyk~al~inp~~~aD~r---Igig~Cf~kl~~~~~a~~a~~ralqLd--p~~v~alv~L~~~~l 244 (1018)
T KOG2002|consen 174 AYNK-KDYRGA---LKYYKKALRINPACKADVR---IGIGHCFWKLGMSEKALLAFERALQLD--PTCVSALVALGEVDL 244 (1018)
T ss_pred Hhcc-ccHHHH---HHHHHHHHhcCcccCCCcc---chhhhHHHhccchhhHHHHHHHHHhcC--hhhHHHHHHHHHHHH
Confidence 3566 788888 7777764332 33432 2233 677888888888888888765 223333332222211
Q ss_pred ---ccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCC------cccHHHHHHHHHhCCCh
Q 005305 142 ---GLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN------LVSCNMIIAGMIDSGDY 212 (703)
Q Consensus 142 ---~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d------~~~~~~li~~~~~~g~~ 212 (703)
....+..|.+++...-+.. ..++.+.+.|.+.|.-.|++..+..+...+...+ ..+|--+.++|-..|++
T Consensus 245 ~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ 323 (1018)
T KOG2002|consen 245 NFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDF 323 (1018)
T ss_pred HccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccH
Confidence 2233556666666665544 5567788888888888888888887776665422 23456677888888888
Q ss_pred hHHHHHHHHhHHcCCCCChh--hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCC----CHHHHH
Q 005305 213 LEAFLLFLDLWEEFSDCGSR--TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG----SIEDAQ 286 (703)
Q Consensus 213 ~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g----~~~~A~ 286 (703)
++|...|.+..+. .||.+ .+..+...+...|+++.+...|..+.+.. +.+..+.-.|...|+..+ ..+.|.
T Consensus 324 ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~ 400 (1018)
T KOG2002|consen 324 EKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKAS 400 (1018)
T ss_pred HHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHH
Confidence 8888888776543 44443 34456677778888888888888877764 555566666666666654 345555
Q ss_pred HHHhhcCCC---Cccc--------------------------------------HHHHHHHHHHcCCcHHHHHHHHHHHH
Q 005305 287 GVFDEMSEK---TTVG--------------------------------------WNTIIAGYALHGYSEEALDLYYEMRD 325 (703)
Q Consensus 287 ~~f~~m~~~---~~~~--------------------------------------~~~li~~~~~~g~~~~A~~l~~~m~~ 325 (703)
.+.....++ |... .|.+..-+...|++.+|...|.+...
T Consensus 401 ~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 401 NVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 555444332 2222 33444444555566666666655543
Q ss_pred C---CCCCCH-----hhHHH-HHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC--
Q 005305 326 S---GVKMDH-----FTFSM-IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-- 394 (703)
Q Consensus 326 ~---g~~pd~-----~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-- 394 (703)
. -..+|. .|..- +....-..++.+.|.+.|..+++..+. -+..|-.|.-+-...+...+|...+....
T Consensus 481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~ 559 (1018)
T KOG2002|consen 481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNI 559 (1018)
T ss_pred hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhc
Confidence 2 112222 11111 122223344566666666666654211 11122222222222345566666666653
Q ss_pred -cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHcc------------CCHHHHHHHHHHhH
Q 005305 395 -CKNVISWNALIAGYGNHGRGEEAVELFEQMLLN-GMRPNHVTFLAVLSACSRS------------GLSERGWEIFQSMS 460 (703)
Q Consensus 395 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~------------g~~~~a~~~~~~m~ 460 (703)
..|+..|+-+..-|.....+..|.+-|....+. ...+|..+..+|.+.|... +..++|.++|..+.
T Consensus 560 d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL 639 (1018)
T KOG2002|consen 560 DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVL 639 (1018)
T ss_pred ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHH
Confidence 345666776666777777777777756555442 1236777777777765432 45678888888887
Q ss_pred hhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCC--CCCcc
Q 005305 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF--KTTKNMWAALLTACRVNGNLELGKFAAEKLYGME--PEKLS 536 (703)
Q Consensus 461 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--p~~~~ 536 (703)
+ .-+.+...-|-+.-.++..|++.+|.++|.+... ..+..+|..+...|...|++..|.+.++..++.. .+++.
T Consensus 640 ~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~ 717 (1018)
T KOG2002|consen 640 R--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSE 717 (1018)
T ss_pred h--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 6 4456677777888889999999999999987642 2245689999999999999999999999887433 44677
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 537 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
....|+.++.++|+|.+|.+.....+...
T Consensus 718 vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 718 VLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 88999999999999999999988776544
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.8e-12 Score=127.39 Aligned_cols=319 Identities=20% Similarity=0.241 Sum_probs=233.5
Q ss_pred cccHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHH--hccCChHHH-HHHHHHHHHhCCCCCcchHHHH
Q 005305 95 AGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISAC--IGLRSIREV-KRVFSYMLSTGFEPDLYMRNRV 171 (703)
Q Consensus 95 ~~~~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~--~~~~~~~~a-~~l~~~~~~~g~~~~~~~~~~L 171 (703)
+++=|.++.....|...++.-+|+.|...| ++.+...-..|+..- -...++.-+ .+-|-.|.+.| +.+..+|
T Consensus 116 V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKMISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHHHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 445677777888999999999999999998 777776666655432 233333322 33444555555 3333443
Q ss_pred HHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHH
Q 005305 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251 (703)
Q Consensus 172 i~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 251 (703)
|.|.+.+ -+|+ ...+...++.+||.|+++--..+.|.++|++-.....+.+..+|+.++.+.+ +..++
T Consensus 191 -----K~G~vAd--L~~E-~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFE-TLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGK 258 (625)
T ss_pred -----ccccHHH--HHHh-hcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccH
Confidence 4566655 4454 4446778999999999999999999999999998888999999999998754 44558
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHh----hcC----CCCcccHHHHHHHHHHcCCcHH-HHHHHHH
Q 005305 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD----EMS----EKTTVGWNTIIAGYALHGYSEE-ALDLYYE 322 (703)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~ 322 (703)
++..+|+...+.||..++|+++...++.|+++.|.+.+- +|+ +|...+|..+|..+.+.+++.+ |..+..+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 999999999999999999999999999999988766544 443 4788899999999999888755 4445555
Q ss_pred HHHC----CCCC----CHhhHHHHHHHHhccCCHHHHHHHHHHHHHcC----CCCc---hHHHHHHHhhHHhcCCHHHHH
Q 005305 323 MRDS----GVKM----DHFTFSMIIRICTRLASLEHAKQAHAGLVRHG----FGLD---IVANSALVDFYSKWGRIEDAR 387 (703)
Q Consensus 323 m~~~----g~~p----d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~Li~~y~k~g~~~~A~ 387 (703)
.+.. .++| |..-|.+.+..|.+..+.+.|.+++....... +.++ ..-|..+.++.+....++.-.
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~ 418 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL 418 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 2222 45568889999999999999999988765421 2222 234556777778888888888
Q ss_pred HHhhhcCc----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005305 388 HVFDKMLC----KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430 (703)
Q Consensus 388 ~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 430 (703)
..|+.|.. |+..+-..++.+..-.|.++-.-+++..|+..|-.
T Consensus 419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 88888853 45555666677777777777777778777776543
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.57 E-value=2.1e-10 Score=118.74 Aligned_cols=462 Identities=13% Similarity=0.050 Sum_probs=275.6
Q ss_pred CcccHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 005305 94 SAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLL 173 (703)
Q Consensus 94 ~~~~~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~ 173 (703)
++..|-+.+. ..+.+.|..++.+..+. ++.+.. |.-++++..-++.|+.++....+. ++.+..+|.+-..
T Consensus 379 sv~LWKaAVe---lE~~~darilL~rAvec--cp~s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~ 448 (913)
T KOG0495|consen 379 SVRLWKAAVE---LEEPEDARILLERAVEC--CPQSMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAK 448 (913)
T ss_pred hHHHHHHHHh---ccChHHHHHHHHHHHHh--ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHH
Confidence 3445655443 23444566666666553 222222 333444555566666666666543 4555666655555
Q ss_pred HHHhCCChHHHHHHHccCCC--------CCc-------------------------------------ccHHHHHHHHHh
Q 005305 174 MHVRCGMMIDARRLFDEMPE--------RNL-------------------------------------VSCNMIIAGMID 208 (703)
Q Consensus 174 ~y~~~g~~~~A~~~f~~m~~--------~d~-------------------------------------~~~~~li~~~~~ 208 (703)
.=-..|+.+...++.++-.. -|. .+|+.-...|.+
T Consensus 449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k 528 (913)
T KOG0495|consen 449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK 528 (913)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence 55556666665555543210 111 234444444444
Q ss_pred CCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 005305 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288 (703)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 288 (703)
.+.++-|..+|...++- ..-+...|......--..|..+.-..++..++..- +.....|-....-+...|++..|+.+
T Consensus 529 ~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~i 606 (913)
T KOG0495|consen 529 RPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVI 606 (913)
T ss_pred cchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHH
Confidence 44455555555444332 11122333333333334455555555555555442 33444555555555566666666666
Q ss_pred HhhcCCC---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 005305 289 FDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365 (703)
Q Consensus 289 f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 365 (703)
+.+.-+. +...|-+-+..-..+.+++.|..+|.+.... .|+...|.--+..---++..++|.+++++.++. ++.
T Consensus 607 l~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~ 683 (913)
T KOG0495|consen 607 LDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPD 683 (913)
T ss_pred HHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCc
Confidence 6655431 3345666666666666777777777666553 344444444444444456667777777666665 333
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC--K-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 442 (703)
-...|-.+...|-..++++.|++.|..-.+ | .+..|-.+...=-+.|+.-.|..+|++.+..+.+ |...|...+..
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ 762 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRM 762 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHH
Confidence 445666666667777777777776665432 3 3345666666556666777777777776655322 44666667777
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 005305 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKF 522 (703)
Q Consensus 443 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~ 522 (703)
-.+.|..++|..+..+..+ ..+.+...|..-|-+..+.++-..+.+.+++.. -|+.+..++...+....+++.|+.
T Consensus 763 ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~ 838 (913)
T KOG0495|consen 763 ELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKARE 838 (913)
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666665 345555666666666666666666666665553 355556666777778888999999
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEE
Q 005305 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEV 577 (703)
Q Consensus 523 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~ 577 (703)
-|.++...+|++..+|.-+...+.+.|.-++-.+++++..... +.-|..|..+
T Consensus 839 Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~av 891 (913)
T KOG0495|consen 839 WFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAV 891 (913)
T ss_pred HHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHH
Confidence 9999999999999999999999999999999999998876543 3446677644
No 30
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=2.1e-11 Score=120.61 Aligned_cols=439 Identities=14% Similarity=0.109 Sum_probs=282.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHH-HHHHHHhccCChHHHHHHHHHHHHhCCCCCc----chHHHHHHHHHhC
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYD-ALISACIGLRSIREVKRVFSYMLSTGFEPDL----YMRNRVLLMHVRC 178 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~-~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~----~~~~~Li~~y~~~ 178 (703)
|..+....+|+..|+-+.+.. .-||.-.+. .+-..+.+.+.+..|.+.+...+..-...+- .+.+.+--.+.+.
T Consensus 211 y~~ndm~~ealntyeiivknk-mf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~ 289 (840)
T KOG2003|consen 211 YEANDMTAEALNTYEIIVKNK-MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA 289 (840)
T ss_pred hhhhHHHHHHhhhhhhhhccc-ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec
Confidence 666667778888887777665 556554332 2234455666777777777666543211111 1233333445677
Q ss_pred CChHHHHHHHccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCC------------ChhhHHHHH-----H
Q 005305 179 GMMIDARRLFDEMPE--RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC------------GSRTFATMI-----R 239 (703)
Q Consensus 179 g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------~~~t~~~ll-----~ 239 (703)
|++++|+..|+...+ ||..+--.|+-++.--|+.++..+.|..|..-...| +....+..+ +
T Consensus 290 gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk 369 (840)
T KOG2003|consen 290 GQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLK 369 (840)
T ss_pred ccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHH
Confidence 888888888876644 665543334444555677777777777776432222 222222221 1
Q ss_pred HHhcCCChHHHHHHHHHHHH---hCCCCcHH-------------HH--------HHHHHHHHhCCCHHHHHHHHhhcCCC
Q 005305 240 ASAGLELISVGKQLHSCALK---MGFGDNVF-------------VS--------CALIDMYSKCGSIEDAQGVFDEMSEK 295 (703)
Q Consensus 240 a~~~~~~~~~a~~~~~~~~~---~g~~~~~~-------------~~--------~~Li~~y~~~g~~~~A~~~f~~m~~~ 295 (703)
-.-+.+ -..|++..-...+ --+.|+-. .+ -.-..-|.+.|+++.|.+++.-...+
T Consensus 370 ~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k 448 (840)
T KOG2003|consen 370 NMEKEN-KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK 448 (840)
T ss_pred HHHHhh-hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc
Confidence 111111 1112221111111 11112110 00 01123477899999999988887776
Q ss_pred CcccHHHH-----HHHHHHcC-CcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHH
Q 005305 296 TTVGWNTI-----IAGYALHG-YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369 (703)
Q Consensus 296 ~~~~~~~l-----i~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 369 (703)
|..+-++. +--|.+-| ++.+|.+.-....... +-|....+.--+.....|+++.|...+.+++...-.-....
T Consensus 449 dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~eal 527 (840)
T KOG2003|consen 449 DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEAL 527 (840)
T ss_pred cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHH
Confidence 65443222 22233333 4556655544443221 22222222222223457899999999999988643322223
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhc---CcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHc
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKM---LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSR 445 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 445 (703)
| .+.-.|-+.|++++|+..|-++ ...++...-.+.+.|-...+..+|++++.+... +-| |...+..|...|-+
T Consensus 528 f-niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 528 F-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQ 604 (840)
T ss_pred H-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhc
Confidence 3 3445678899999999999876 345666777788889999999999999987765 455 55788888899999
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH-HHcCChhHHHHH
Q 005305 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTTKNMWAALLTAC-RVNGNLELGKFA 523 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~-~~~g~~~~a~~~ 523 (703)
.|+-.+|.+.+-.--+ -++-+.++...|..-|....-+++|...|++. -++|+..-|..++..| ++.|++..|...
T Consensus 605 egdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~ 682 (840)
T KOG2003|consen 605 EGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL 682 (840)
T ss_pred ccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9999999998766543 46678889889999999999999999999985 4589999999999888 688999999999
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhCCC
Q 005305 524 AEKLYGMEPEKLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 524 ~~~~~~~~p~~~~~~~~l~~~y~~~g~ 550 (703)
++.+...-|.|....-.|+.+....|.
T Consensus 683 yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 683 YKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999999999999999999888874
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=2.8e-11 Score=119.16 Aligned_cols=245 Identities=18% Similarity=0.163 Sum_probs=165.8
Q ss_pred cccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 005305 82 ESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160 (703)
Q Consensus 82 ~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g 160 (703)
.-+|+..|. ...++..||+ +++--..+.|.++|++..... .+.+..+||.+|.+-+ +..++++..+|+...
T Consensus 197 dL~~E~~PK---T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k-~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 197 DLLFETLPK---TDETVSIMIAGLCKFSSLERARELYKEHRAAK-GKVYREAFNGLIGASS----YSVGKKLVAEMISQK 268 (625)
T ss_pred HHHHhhcCC---CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh-heeeHHhhhhhhhHHH----hhccHHHHHHHHHhh
Confidence 434444443 5678999999 999999999999999998776 6889999999997754 445588999999999
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHH----ccCC----CCCcccHHHHHHHHHhCCChhH-HHHHHHHhHH----cCC
Q 005305 161 FEPDLYMRNRVLLMHVRCGMMIDARRLF----DEMP----ERNLVSCNMIIAGMIDSGDYLE-AFLLFLDLWE----EFS 227 (703)
Q Consensus 161 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f----~~m~----~~d~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~ 227 (703)
+.||.+|+|+++...++.|+++.|++.+ .+|. +|...+|..+|.-+.+.+++.+ |..+..+... +-.
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 9999999999999999999988876544 4444 3888888888888888887744 3344444432 223
Q ss_pred CC----ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC----CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCccc
Q 005305 228 DC----GSRTFATMIRASAGLELISVGKQLHSCALKMG----FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG 299 (703)
Q Consensus 228 ~p----~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~ 299 (703)
+| |..-|.+.+..|.+..+.+.|.+++....... ++++. . ..+-
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~-----------------------~-----~~fY 400 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ-----------------------H-----RNFY 400 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH-----------------------H-----HHHH
Confidence 33 34567778888888888888888876554321 11110 0 0112
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 005305 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362 (703)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 362 (703)
|..+....++....+.-+..|..|.-.-.-|+..+...++.|....+.++-...++..++..|
T Consensus 401 yr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 401 YRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 333444445555555555666666555555666666666666666666666666665555544
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.49 E-value=6.1e-11 Score=127.53 Aligned_cols=329 Identities=15% Similarity=0.179 Sum_probs=188.6
Q ss_pred CChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHH
Q 005305 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289 (703)
Q Consensus 210 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 289 (703)
|+.++|.+++.+..+.... +...|-+|...+-..|+.+++...+-.+.... +.|...|..+.+...+.|.++.|.-.|
T Consensus 153 g~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 5555555555555544222 34455555555555555555554443333222 444455555555555555555555555
Q ss_pred hhcCCCCcccHHHH---HHHHHHcCCcHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 005305 290 DEMSEKTTVGWNTI---IAGYALHGYSEEALDLYYEMRDSGVKMDHF-TFSMIIRICTRLASLEHAKQAHAGLVRHGFGL 365 (703)
Q Consensus 290 ~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 365 (703)
.+..+.++.-|-.. +..|.+.|+...|++-|.++.+... |... -+-.
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d---------------------------- 281 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIED---------------------------- 281 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHH----------------------------
Confidence 55544333323222 2344555555555555555554321 1111 1111
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc--C---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------------
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC--K---NVISWNALIAGYGNHGRGEEAVELFEQMLLN------------- 427 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------------- 427 (703)
..-..+..|...++-+.|.+.++.... . +....|.++..|....+++.|......+...
T Consensus 282 ---~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 282 ---LIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 111122333333434444444443322 1 2223444555555555555555554444431
Q ss_pred --------------CCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcC--CCCchHHHHHHHHHHHhcCChHHHHHH
Q 005305 428 --------------GMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK--IKPRAMHYACMIELLGREGLLDEAFAL 491 (703)
Q Consensus 428 --------------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~ 491 (703)
++.++...+ .+.-+..+....+....+...... .. ..-+...|.-+.++|...|++.+|+++
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~ 436 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRL 436 (895)
T ss_pred hccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 122222221 112223344444444444443443 34 334567888999999999999999999
Q ss_pred HHhCCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 005305 492 IRGAPFK---TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568 (703)
Q Consensus 492 ~~~m~~~---p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~ 568 (703)
|..+... .+..+|--+...+...|.+++|.+.+++++...|++..+-..|+.+|.+.|+.++|.+.+..|..-+-..
T Consensus 437 l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~ 516 (895)
T KOG2076|consen 437 LSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRN 516 (895)
T ss_pred HHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccc
Confidence 9886432 2567999999999999999999999999999999999999999999999999999999999987555445
Q ss_pred CCceeE
Q 005305 569 LPACSW 574 (703)
Q Consensus 569 ~~~~s~ 574 (703)
.+++.|
T Consensus 517 ~e~~a~ 522 (895)
T KOG2076|consen 517 AEACAW 522 (895)
T ss_pred hhhccc
Confidence 567777
No 33
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.4e-10 Score=116.47 Aligned_cols=415 Identities=14% Similarity=0.044 Sum_probs=241.2
Q ss_pred HHH-HHhcCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC-cchHHHHHHHHHh
Q 005305 101 IEK-LVLNKRYREALELFEILEFEGGFDVG-SSTYDALISACIGLRSIREVKRVFSYMLSTGFEPD-LYMRNRVLLMHVR 177 (703)
Q Consensus 101 li~-~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~-~~~~~~Li~~y~~ 177 (703)
.-. +.++|++++|++.|.+.... .|| ..-|...-.+|...|++++..+--...++. .|+ +-.+..-..++-.
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 344 78889999999999999884 477 666777777788889998888777777654 343 3345555567777
Q ss_pred CCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHh--------HH-c--CCCCChhhHHHHHHHHhcCCC
Q 005305 178 CGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDL--------WE-E--FSDCGSRTFATMIRASAGLEL 246 (703)
Q Consensus 178 ~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~-~--g~~p~~~t~~~ll~a~~~~~~ 246 (703)
.|++++|+. -+|-.++..+|....-..-+.+++... .+ . .+-|......+.+..+-..-.
T Consensus 196 lg~~~eal~---------D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 196 LGKFDEALF---------DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hccHHHHHH---------hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 788777753 122333333333332222222222221 11 1 122333322222222111000
Q ss_pred hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC-CCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 005305 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC-GSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325 (703)
Q Consensus 247 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 325 (703)
. .+...+-..|...-..+=..|... ..+..|...+.+-.. ...... ..+..++-+ +.|.
T Consensus 267 ~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~------~~~~~~--~~n~~d~~l---e~~A- 326 (606)
T KOG0547|consen 267 P--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECL------GSESSL--SVNEIDAEL---EYMA- 326 (606)
T ss_pred c--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhh------hhhhhc--cccccchhH---HHHH-
Confidence 0 000000011222222222222111 112222222221100 000000 000000000 0000
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHH
Q 005305 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWN 402 (703)
Q Consensus 326 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~ 402 (703)
.+....-.-+.-.|+.-.+.+-++.+++....++ ..|--+..+|....+.++..+.|+... ..|..+|-
T Consensus 327 -------~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYy 398 (606)
T KOG0547|consen 327 -------EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYY 398 (606)
T ss_pred -------HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhH
Confidence 0000000011224566666666777766543322 224455566777777777777777663 23445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHh
Q 005305 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR 481 (703)
Q Consensus 403 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 481 (703)
.=...+.-.+++++|..=|++.+. +.|+. ..|..+-.+..+.+.++++...|+..++ .++..++.|+.....+..
T Consensus 399 HRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 399 HRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTD 474 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhh
Confidence 555555666778889998988877 56654 6777777777888899999999999987 577778899999999999
Q ss_pred cCChHHHHHHHHh-CCCCCC---------HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCh
Q 005305 482 EGLLDEAFALIRG-APFKTT---------KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551 (703)
Q Consensus 482 ~g~~~~A~~~~~~-m~~~p~---------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 551 (703)
.+++++|.+.|+. +..+|+ +.+-.+++..- -.+++.+|..+.+++++++|..-.+|..|+.+-.+.|+.
T Consensus 475 qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH
Confidence 9999999999986 444444 22333333333 338999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 005305 552 KEAAEVIRTLR 562 (703)
Q Consensus 552 ~~A~~~~~~m~ 562 (703)
++|.++|++..
T Consensus 554 ~eAielFEksa 564 (606)
T KOG0547|consen 554 DEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHH
Confidence 99999998754
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=5.9e-11 Score=117.46 Aligned_cols=199 Identities=19% Similarity=0.271 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHhhcCCCCcccHHHHHH---HHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 005305 279 CGSIEDAQGVFDEMSEKTTVGWNTIIA---GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAH 355 (703)
Q Consensus 279 ~g~~~~A~~~f~~m~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 355 (703)
.|++++|.+.+.+....|...-.+|.. .+-..|+.++|++.|-++..- +.-+...+..+.+.|....+..+|.+++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 455666666665555544433222221 234455556666555544321 1223334444444555555555555555
Q ss_pred HHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhc---CcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC
Q 005305 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM---LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432 (703)
Q Consensus 356 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 432 (703)
.++... ++.|+.+.+.|.+.|-+.|+-..|.+.+-+- -.-|+.+..-|..-|....-.++|+..|++.-- ++|+
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 444332 3334555555555555555555554443221 112333323333444444444455555544432 4455
Q ss_pred HHHHHHHHHHH-HccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcC
Q 005305 433 HVTFLAVLSAC-SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483 (703)
Q Consensus 433 ~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 483 (703)
..-|-.++..| .+.|++++|..+++..-+ .++.+......|+...+..|
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hr--kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHR--KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCccchHHHHHHHHHhcccc
Confidence 54444444333 234455555555444433 33444444444444443333
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.47 E-value=1.1e-13 Score=140.04 Aligned_cols=255 Identities=17% Similarity=0.116 Sum_probs=109.4
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHH-HHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCC
Q 005305 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR-ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382 (703)
Q Consensus 304 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 382 (703)
...+.+.|++++|++++++-.....+|+...|-.++. .+-..++.+.|...++.+...+.. ++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4455566777777776654433322344444433333 344566677777777777665433 45566667766 67788
Q ss_pred HHHHHHHhhhcC--cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 005305 383 IEDARHVFDKML--CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACSRSGLSERGWEIFQSM 459 (703)
Q Consensus 383 ~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 459 (703)
+++|.+++...- .++...|..++..+.+.|+++++..+++++.... ..++...|..+...+.+.|+.++|.+.++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888877662 3566778888888899999999999999877533 2345667777888889999999999999999
Q ss_pred HhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch
Q 005305 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF--KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 460 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 537 (703)
.+. .+.+......++..+...|+.+++.++++.... +.|+..|..+..++...|+.++|...++++....|+|+..
T Consensus 173 l~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~ 250 (280)
T PF13429_consen 173 LEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLW 250 (280)
T ss_dssp HHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHH
T ss_pred HHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccc
Confidence 872 233577788899999999999987777765421 3455678899999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 538 YVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 538 ~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
...+++++...|+.++|.+++++.-
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999987754
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.7e-09 Score=108.17 Aligned_cols=479 Identities=13% Similarity=0.099 Sum_probs=287.4
Q ss_pred CCcccchhhcccccCccCC-CCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHH
Q 005305 73 NKIYTEELKESSLPDTQMK-KPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVK 150 (703)
Q Consensus 73 ~~~~~aa~~~~~f~~~~~~-~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 150 (703)
+++..| +.+|+..... ..|...|---+. -.++.....|..+++.....= .+.|.. |-.-+..--..|++..|+
T Consensus 87 ~e~~RA---RSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdql-WyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 87 KEIQRA---RSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQL-WYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHH---HHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHH-HHHHHHHHHHhcccHHHH
Confidence 445555 6666554332 124445555555 556666666666666665432 122222 222222233456666677
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHhHHc-CC
Q 005305 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP--ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE-FS 227 (703)
Q Consensus 151 ~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~ 227 (703)
++|+.-.+ ..|+...|++.|++=.+...++.|+.+++... .|++.+|--..+-=.++|+..-|..+|....+. |-
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 77766554 36666677777777666667777777666543 366666666666666666666666666665432 10
Q ss_pred -CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc--HHHHHHHHHHHHhCCCHHHHHHH--------HhhcCCC-
Q 005305 228 -DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN--VFVSCALIDMYSKCGSIEDAQGV--------FDEMSEK- 295 (703)
Q Consensus 228 -~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~--------f~~m~~~- 295 (703)
.-+...|.++..-=.....++.|.-++..++..- +.+ ..++..+...=-+-|+....... ++.+...
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 0112223333333334455666666666666542 222 33444444443344443332222 1222222
Q ss_pred --CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHh-------hHHHHHHHH---hccCCHHHHHHHHHHHHHcCC
Q 005305 296 --TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF-------TFSMIIRIC---TRLASLEHAKQAHAGLVRHGF 363 (703)
Q Consensus 296 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------t~~~ll~a~---~~~~~~~~a~~~~~~~~~~g~ 363 (703)
|-.+|--.+..-...|+.+...++|++.... ++|-.. .|.-+=-+| ....+.+.++++++..++. +
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-I 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-I 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-c
Confidence 3345666666666678888889999888764 555321 222222222 3467888889999888883 3
Q ss_pred CCchHHHHHHHhhHH----hcCCHHHHHHHhhhcC--cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHH
Q 005305 364 GLDIVANSALVDFYS----KWGRIEDARHVFDKML--CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTF 436 (703)
Q Consensus 364 ~~~~~~~~~Li~~y~----k~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~ 436 (703)
+-..+++.-+=-||+ ++.++..|++++...+ .|-...+...|..=.+.+.++....++++.++- .| |..+|
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W 474 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAW 474 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHH
Confidence 445566666555555 5788889998888764 466677887888888888999999999998884 44 44788
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH---
Q 005305 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTTKNMWAALLTACR--- 512 (703)
Q Consensus 437 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~--- 512 (703)
......-...|+.+.|+.+|.-++..-.+......|.+.|+-=...|.++.|..+++++ ...+...+|-++..--.
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~ 554 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASAS 554 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccc
Confidence 87777777889999999999888774444444567778888778889999999998875 33455667776655433
Q ss_pred --HcC-----------ChhHHHHHHHHHh----CCCCCC--cchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 513 --VNG-----------NLELGKFAAEKLY----GMEPEK--LSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 513 --~~g-----------~~~~a~~~~~~~~----~~~p~~--~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
+.+ +...|+.+|+++. +..|.. ........++-...|...+...+-..|++
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 233 4566777777765 233321 12233344445566777777777666653
No 37
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.47 E-value=5.5e-09 Score=108.50 Aligned_cols=392 Identities=13% Similarity=0.066 Sum_probs=250.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHH
Q 005305 142 GLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLL 218 (703)
Q Consensus 142 ~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~ 218 (703)
...+.+.|+-++...++.- +.+.. |.-+|++...++.|.++++...+ .+...|-+-...=-.+|+.+....+
T Consensus 388 elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 4445556777777666541 22333 33344555666777777665543 4566676555555567777766666
Q ss_pred HHH----hHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc--HHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 005305 219 FLD----LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDN--VFVSCALIDMYSKCGSIEDAQGVFDEM 292 (703)
Q Consensus 219 ~~~----m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m 292 (703)
..+ +...|+..|...|..=..+|-..|..-.+..+...++..|++.. ..+|+.-...+.+.+.++-|+.+|...
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 543 34567777777777777777777777777777777777665432 456777777777777788777777765
Q ss_pred CC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHH
Q 005305 293 SE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369 (703)
Q Consensus 293 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 369 (703)
.+ .+...|...+..--..|..++-..+|++.... ++-....+.......-..|+...|+.++..+.+.... +..+
T Consensus 543 lqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seei 620 (913)
T KOG0495|consen 543 LQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEI 620 (913)
T ss_pred HhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHH
Confidence 54 24456766666666677777777777777765 2223333333344445567777777777777775433 5667
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcC--cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHcc
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKML--CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRS 446 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~ 446 (703)
+-+-+..-....+++.|+.+|.+.. .++...|.--+..---.+..++|++++++.++. -|+- ..|..+...+-+.
T Consensus 621 wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHH
Confidence 7777777777777777777777663 455556655555555567777777777776663 5555 4555555666677
Q ss_pred CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005305 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF--KTTKNMWAALLTACRVNGNLELGKFAA 524 (703)
Q Consensus 447 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~a~~~~ 524 (703)
++++.|+..|..=.+ ..+-.+..|-.|...=.+.|.+-.|..++++... +.|...|...+..-.++|+.+.|...+
T Consensus 699 ~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 777777776655443 3344455666666666777777777777776432 335667777777777777777777777
Q ss_pred HHHhCCCCCCcchHHHHHHH
Q 005305 525 EKLYGMEPEKLSNYVVLLNI 544 (703)
Q Consensus 525 ~~~~~~~p~~~~~~~~l~~~ 544 (703)
.++++--|++...|.--+.+
T Consensus 777 akALQecp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 777 AKALQECPSSGLLWAEAIWL 796 (913)
T ss_pred HHHHHhCCccchhHHHHHHh
Confidence 77666556554444333333
No 38
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=1.1e-10 Score=123.84 Aligned_cols=284 Identities=14% Similarity=0.038 Sum_probs=140.8
Q ss_pred CCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHH--HHHHHHHHHHhCCCHHHHH
Q 005305 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVF--VSCALIDMYSKCGSIEDAQ 286 (703)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~ 286 (703)
.|++++|.+.+....+..-.| ...|.....+....|+++.+.+.+..+.+.. |+.. ........+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHH
Confidence 466666665555433321111 1222222333455666666666666665532 3332 2223356677777888877
Q ss_pred HHHhhcCCC---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 005305 287 GVFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363 (703)
Q Consensus 287 ~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 363 (703)
+.++++.+. ++.....+...|.+.|++++|.+++..+.+.+..++. .+..+-.
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ----------------------- 229 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 777776542 4455667777778888888888888888776544222 1110000
Q ss_pred CCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005305 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440 (703)
Q Consensus 364 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 440 (703)
.++..++....+..+.+...++++.++. .++.....+...+...|+.++|.+++++..+. .||... .++
T Consensus 230 ----~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l 301 (398)
T PRK10747 230 ----QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLL 301 (398)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHH
Confidence 0111111111112223333333333321 24444455555555555555555555555542 223211 112
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhH
Q 005305 441 SACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTTKNMWAALLTACRVNGNLEL 519 (703)
Q Consensus 441 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~ 519 (703)
.+....++.+++.+..+...+ ..+-|+..+.++..++.+.|++++|.+.|+.. ...|+...+..|...+...|+.++
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~ 379 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEE 379 (398)
T ss_pred HhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 222233555555555555544 22333444555555555555566555555542 334555555555555556666666
Q ss_pred HHHHHHHHhC
Q 005305 520 GKFAAEKLYG 529 (703)
Q Consensus 520 a~~~~~~~~~ 529 (703)
|...+++.+.
T Consensus 380 A~~~~~~~l~ 389 (398)
T PRK10747 380 AAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHh
Confidence 6555555544
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.44 E-value=2.3e-09 Score=115.69 Aligned_cols=321 Identities=11% Similarity=0.055 Sum_probs=199.1
Q ss_pred cccCCCCcccchhhcccccCccCCCC-CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCC
Q 005305 68 PRPKPNKIYTEELKESSLPDTQMKKP-SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRS 145 (703)
Q Consensus 68 ~y~k~~~~~~aa~~~~~f~~~~~~~p-~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~ 145 (703)
.+++ |++.+| .+++.++....| +...|.++-. |-+.|+.++++..+-.+-... +-|..-|..+-.-..+.|+
T Consensus 149 lfar-g~~eeA---~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 149 LFAR-GDLEEA---EEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHh-CCHHHH---HHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhccc
Confidence 4667 999999 999998877644 4567999999 999999999998876665543 5567888888888889999
Q ss_pred hHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCc-ccH-------HHHHHHHHhCCChhHHHH
Q 005305 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL-VSC-------NMIIAGMIDSGDYLEAFL 217 (703)
Q Consensus 146 ~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~-~~~-------~~li~~~~~~g~~~~A~~ 217 (703)
+++|.-.+..+++.. +++....---+.+|-+.|+...|..-|.++.+.+. +.| -.++..|...++-+.|++
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999876 55555555567889999999999888877755222 111 123444555566677777
Q ss_pred HHHHhHHcC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH---------------------------hCCCCcHHH-
Q 005305 218 LFLDLWEEF-SDCGSRTFATMIRASAGLELISVGKQLHSCALK---------------------------MGFGDNVFV- 268 (703)
Q Consensus 218 ~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~---------------------------~g~~~~~~~- 268 (703)
.++.....+ -..+..+++.++..+.+...++.+......... .++.++..+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 766665421 122333444555555555555555544433333 012223333
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCC----CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 005305 269 SCALIDMYSKCGSIEDAQGVFDEMSE----KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344 (703)
Q Consensus 269 ~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 344 (703)
...+--.-.+.+...+++.-|-.... .++..|.-+..+|.+.|++.+|+.+|..+...-.--+.+.|-.+...+-.
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 22222222233444444433322221 13334556666677777777777777666654333345556666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcC
Q 005305 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396 (703)
Q Consensus 345 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~ 396 (703)
.+..++|.+.+..++.... .+..+--+|...|-+.|+.++|.+++..+..|
T Consensus 462 l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~ 512 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINP 512 (895)
T ss_pred HhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence 6777777777776666432 24445555666666777777777777665433
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=3.3e-10 Score=120.87 Aligned_cols=289 Identities=15% Similarity=0.059 Sum_probs=150.3
Q ss_pred hCCChhHHHHHHHHhHHcCCCCChh-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHH
Q 005305 208 DSGDYLEAFLLFLDLWEEFSDCGSR-TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286 (703)
Q Consensus 208 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 286 (703)
..|+++.|.+.+.+..+. .|+.. .+.....+....|+.+.+.+++..+.+..-.+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 456677777666655443 23322 233334455566777777777766655431222234444566667777777777
Q ss_pred HHHhhcCCC---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 005305 287 GVFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGF 363 (703)
Q Consensus 287 ~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 363 (703)
..++.+.+. +...+..+...|.+.|++++|.+++..+.+.++.+.......-..+.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~--------------------- 232 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE--------------------- 232 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---------------------
Confidence 777776542 44456667777777777777777777777765432221111111111
Q ss_pred CCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHH---H
Q 005305 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTF---L 437 (703)
Q Consensus 364 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~---~ 437 (703)
..+++.-......+...+.++..+. .+...+..+...+...|+.++|++++++..+. .||.... .
T Consensus 233 -------~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 233 -------IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred -------HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0001000111112233333333332 25555666666666666666666666666653 3333210 1
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh---CCCCCCHHHHHHHHHHHHHc
Q 005305 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG---APFKTTKNMWAALLTACRVN 514 (703)
Q Consensus 438 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~p~~~~~~~ll~a~~~~ 514 (703)
.........++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. ....||...+..+...+.+.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 111112233555666666665554222222213445666666666666666666662 23456666666666666666
Q ss_pred CChhHHHHHHHHHh
Q 005305 515 GNLELGKFAAEKLY 528 (703)
Q Consensus 515 g~~~~a~~~~~~~~ 528 (703)
|+.++|..++++.+
T Consensus 384 g~~~~A~~~~~~~l 397 (409)
T TIGR00540 384 GDKAEAAAMRQDSL 397 (409)
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666666654
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.38 E-value=4.3e-10 Score=119.35 Aligned_cols=284 Identities=11% Similarity=0.043 Sum_probs=164.1
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHH--HHHHHHHhCCChHH
Q 005305 106 LNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRN--RVLLMHVRCGMMID 183 (703)
Q Consensus 106 ~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~--~Li~~y~~~g~~~~ 183 (703)
..|++++|.+.+....+.. -.| ...|.....+..+.|+++.+.+.+..+.+. .|+..... .....+...|+.+.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~-~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA-EQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc-cch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3577777776666554432 011 222333334445667777777777777654 34443222 33456667777777
Q ss_pred HHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005305 184 ARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM 260 (703)
Q Consensus 184 A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 260 (703)
|...++++.+ .+......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 172 Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------------------- 228 (398)
T PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------------------- 228 (398)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------------------
Confidence 7777766654 24445666667777777777777777777665443211 111000
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHH
Q 005305 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337 (703)
Q Consensus 261 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 337 (703)
..++..++....+..+.+...++++.++. .++.....+...+...|+.++|.+++++..+. .||... .
T Consensus 229 -----~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~ 299 (398)
T PRK10747 229 -----QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--V 299 (398)
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--H
Confidence 01122222222233344555555555543 24555666666777777777777777666653 344311 1
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC--cCChhhHHHHHHHHHhcCCHH
Q 005305 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML--CKNVISWNALIAGYGNHGRGE 415 (703)
Q Consensus 338 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~ 415 (703)
++.+....++.+.+.+..+...+.. +.|.....++..++.+.|++++|.+.|+... .|+...+-.+...+.+.|+.+
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPE 378 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Confidence 2233334466677777666666653 2356667777777777888888888887773 466667777777788888888
Q ss_pred HHHHHHHHHHH
Q 005305 416 EAVELFEQMLL 426 (703)
Q Consensus 416 ~A~~l~~~m~~ 426 (703)
+|.+++++-..
T Consensus 379 ~A~~~~~~~l~ 389 (398)
T PRK10747 379 EAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHh
Confidence 88887776643
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=1.5e-09 Score=115.83 Aligned_cols=277 Identities=12% Similarity=0.023 Sum_probs=161.5
Q ss_pred CCCHHHHHHHHhhcCCC--C-cccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHhccCCHHHHHH
Q 005305 279 CGSIEDAQGVFDEMSEK--T-TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF--TFSMIIRICTRLASLEHAKQ 353 (703)
Q Consensus 279 ~g~~~~A~~~f~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~~~~a~~ 353 (703)
.|+++.|.+.+.+..+. + ...+-.....+.+.|+++.|.+.|.+..+. .|+.. .-..........|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555444331 1 111222233344445555555555554432 12221 11122333444555555555
Q ss_pred HHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcC---ChhhHH----HHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK---NVISWN----ALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 354 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
.++.+.+..+ .+..+...+..+|...|++++|.+.+..+.+. +...+. ....++...+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5555555432 24445555555566666666555555555322 111111 111122233333334445555554
Q ss_pred cCC---CcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHH-HHHHHHHHH--hcCChHHHHHHHHhC-CCCC
Q 005305 427 NGM---RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH-YACMIELLG--REGLLDEAFALIRGA-PFKT 499 (703)
Q Consensus 427 ~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~li~~~~--~~g~~~~A~~~~~~m-~~~p 499 (703)
... +.+...+..+...+...|+.++|.+.++...+. .|+... ...++..+. ..++.+++.+.+++. ...|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 321 126678888889999999999999999999873 233321 001333333 457888888888763 3345
Q ss_pred CH---HHHHHHHHHHHHcCChhHHHHHHH--HHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 500 TK---NMWAALLTACRVNGNLELGKFAAE--KLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 500 ~~---~~~~~ll~a~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
+. ....++...|.+.|++++|+..++ ..++..|++ ..+..++.++.+.|+.++|.+++++..
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43 566788999999999999999999 577888984 567899999999999999999998854
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.35 E-value=5.7e-12 Score=127.64 Aligned_cols=252 Identities=17% Similarity=0.126 Sum_probs=104.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChH
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDA-LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 182 (703)
+.+.|++++|+++++...... .+|+...|-. +...+...++.+.|.+.++.+.+.+ +.++..+..++.. ...++++
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~-~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~ 94 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKI-APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPE 94 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccccc
Confidence 888999999999996544332 2455545444 4445556788999999999998876 3356677777777 6889999
Q ss_pred HHHHHHccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 005305 183 DARRLFDEMPE--RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF-SDCGSRTFATMIRASAGLELISVGKQLHSCALK 259 (703)
Q Consensus 183 ~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 259 (703)
+|.++++..-+ ++...+..++..+.+.++++++.++++...... ..++...|..+...+.+.|+.++|...++.+++
T Consensus 95 ~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~ 174 (280)
T PF13429_consen 95 EALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE 174 (280)
T ss_dssp -----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99988876633 566778888888999999999999999876533 345666777788888889999999999999988
Q ss_pred hCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC---CCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHH
Q 005305 260 MGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS---EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336 (703)
Q Consensus 260 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 336 (703)
.. |.|..+.+.++..+...|+.+++.+++.... ..|...|..+..+|...|++++|+..|++..... +.|..+..
T Consensus 175 ~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~ 252 (280)
T PF13429_consen 175 LD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLL 252 (280)
T ss_dssp H--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccccccc
Confidence 76 5568888889999999999988777776553 3567788889999999999999999999887752 34666777
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHH
Q 005305 337 MIIRICTRLASLEHAKQAHAGLVR 360 (703)
Q Consensus 337 ~ll~a~~~~~~~~~a~~~~~~~~~ 360 (703)
.+..++...|+.+.|.++..++.+
T Consensus 253 ~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 253 AYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHT-----------------
T ss_pred cccccccccccccccccccccccc
Confidence 777778888888888777766543
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=1.1e-10 Score=122.00 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=92.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHH
Q 005305 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475 (703)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 475 (703)
.+.+|-++...|..+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+.... .++.+|+++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~rhYnAw 492 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDPRHYNAW 492 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCchhhHHH
Confidence 445666666666666666666666666655 345 335555554555555566666666655433 444555543
Q ss_pred ---HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC
Q 005305 476 ---IELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 476 ---i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 550 (703)
.-.|.+.++++.|+-.|++. .+.| +.+....+...+.+.|+.++|.+.+++++-++|.|+-.-+..+.++...++
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 33455666666666666553 3344 334444555555666666666666666666666666666666666666666
Q ss_pred hHHHHHHHHHHH
Q 005305 551 LKEAAEVIRTLR 562 (703)
Q Consensus 551 ~~~A~~~~~~m~ 562 (703)
+++|...+++++
T Consensus 573 ~~eal~~LEeLk 584 (638)
T KOG1126|consen 573 YVEALQELEELK 584 (638)
T ss_pred hHHHHHHHHHHH
Confidence 666666666665
No 45
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=2.4e-08 Score=100.09 Aligned_cols=382 Identities=15% Similarity=0.120 Sum_probs=198.3
Q ss_pred hCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHH
Q 005305 177 RCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQL 253 (703)
Q Consensus 177 ~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 253 (703)
..+++..|+.+|+.... +++..|--.+..=.++.....|..++++....-+..|.. |-.-+-.=-..|++..|+++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHH
Confidence 34455556666665543 445555555666666666666666666655432222221 11222222345666666666
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC--CCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCC
Q 005305 254 HSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS--EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331 (703)
Q Consensus 254 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 331 (703)
|..-.+ ..|+...|++.|+.=.+-..++.|..++++.. .|++.+|---..--.++|+..-|..+|....+. -.|
T Consensus 164 ferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~ 239 (677)
T KOG1915|consen 164 FERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGD 239 (677)
T ss_pred HHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhh
Confidence 665554 35666667777766666666667776666643 456666665555555666666666666655442 112
Q ss_pred Hh----hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-chHHHHHHHhhHHhcCCHH---HHHHH-----hhhcCcC--
Q 005305 332 HF----TFSMIIRICTRLASLEHAKQAHAGLVRHGFGL-DIVANSALVDFYSKWGRIE---DARHV-----FDKMLCK-- 396 (703)
Q Consensus 332 ~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~---~A~~~-----f~~m~~~-- 396 (703)
.. .|++...--.+....+.|..++..++..-... ....|..+...--+-|+.. ++.-- ++.+...
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 22 22222222234455666666666666642221 1334444443333344432 22211 1222222
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--H-----HHHHHHHHH---HccCCHHHHHHHHHHhHhhcCC
Q 005305 397 -NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH--V-----TFLAVLSAC---SRSGLSERGWEIFQSMSRDHKI 465 (703)
Q Consensus 397 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~-----t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~ 465 (703)
|-.+|--.+..-...|+.+...++|++.+.. ++|-. . .|.-+=-+| ....+++.++++|+...+ -+
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lI 396 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LI 396 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hc
Confidence 3345555555555566666666666666643 44422 1 111111111 234566666666666554 34
Q ss_pred CCchHHHHHHHHHHH----hcCChHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHH
Q 005305 466 KPRAMHYACMIELLG----REGLLDEAFALIRG-APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540 (703)
Q Consensus 466 ~p~~~~~~~li~~~~----~~g~~~~A~~~~~~-m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 540 (703)
+....++.-+--+|+ |+-++..|.+++.. ++.-|-..++...+..-.+.++++.-+.++++.++..|.+..+|.-
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 444444444433333 55566666666543 4455555666666666666666666666666666666666666666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 541 LLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 541 l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
.+.+-...|++|.|..+|.-......
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 66666666666666666665554443
No 46
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.33 E-value=2.3e-09 Score=114.93 Aligned_cols=455 Identities=14% Similarity=0.093 Sum_probs=246.6
Q ss_pred CCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHH
Q 005305 92 KPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170 (703)
Q Consensus 92 ~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~ 170 (703)
.||-++|..+|. |+..|+.+.|- +|.-|.-.. .+.+...|+.++.+....++.+.++ .|...+|+.
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 356677777777 77777776666 666666555 5566666666666666666655554 455667777
Q ss_pred HHHHHHhCCChHH---HHHHHccCCC---C----Ccc---------------cHHHHHHHHHhCCChhHHHHHHHHhHHc
Q 005305 171 VLLMHVRCGMMID---ARRLFDEMPE---R----NLV---------------SCNMIIAGMIDSGDYLEAFLLFLDLWEE 225 (703)
Q Consensus 171 Li~~y~~~g~~~~---A~~~f~~m~~---~----d~~---------------~~~~li~~~~~~g~~~~A~~~~~~m~~~ 225 (703)
|...|...|++.. .++.+..+.. + ... .-...+.-....|-++.+++++..+...
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 7777777766543 2221111100 0 000 0111223333344455555554444221
Q ss_pred CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC----cccHH
Q 005305 226 FSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT----TVGWN 301 (703)
Q Consensus 226 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~----~~~~~ 301 (703)
... .++..+++-+..... ..+++.......--.++..++.++++.-.-.|+++.|..++.+|.++. ..-|-
T Consensus 169 a~~---~p~~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 169 AWN---APFQVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred ccc---chHHHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 100 011113444443322 233333333222115888889999998888999999999999998753 22233
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHH-----------HHHHHH----------
Q 005305 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQA-----------HAGLVR---------- 360 (703)
Q Consensus 302 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~-----------~~~~~~---------- 360 (703)
.++-+ .+...-+..+++-|++.|+.|++.|+..-+..+...|....+... ...+.+
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~ 320 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQ 320 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHH
Confidence 44444 777788888888899999999999998888887775553332211 111110
Q ss_pred ---------------cCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc-------CChhhHHHHHHHHHhcCCHH---
Q 005305 361 ---------------HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-------KNVISWNALIAGYGNHGRGE--- 415 (703)
Q Consensus 361 ---------------~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~~~~~~~~li~~~~~~g~~~--- 415 (703)
.|+.....+|.-.+. ....|.-++.+++-..+.. .++..+..++.-|.+.-+..
T Consensus 321 nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~ 399 (1088)
T KOG4318|consen 321 NLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICS 399 (1088)
T ss_pred HHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHH
Confidence 011111112211111 1113444444444444322 23334444443332211100
Q ss_pred ------HHHHH---------HHHHHHcCCCcCH----------------------------HHHHHHHHHHHccCCHHHH
Q 005305 416 ------EAVEL---------FEQMLLNGMRPNH----------------------------VTFLAVLSACSRSGLSERG 452 (703)
Q Consensus 416 ------~A~~l---------~~~m~~~g~~p~~----------------------------~t~~~ll~a~~~~g~~~~a 452 (703)
.++.. ..+... ...||. ..-+.++..|.+.-+..++
T Consensus 400 ~i~~~~qgls~~l~se~tp~vsell~-~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~ 478 (1088)
T KOG4318|consen 400 RIYYAGQGLSLNLNSEDTPRVSELLE-NLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKI 478 (1088)
T ss_pred HHHHHHHHHHhhhchhhhHHHHHHHH-HhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000000 012222 1122333344444444444
Q ss_pred HHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC-----CCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF-----KTTKNMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 453 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
+..-+.... .-+ ...|..||+.+.+...+++|..+.++..- .-|..-+..+.+...+++....+..+.++.
T Consensus 479 l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ 554 (1088)
T KOG4318|consen 479 LCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYED 554 (1088)
T ss_pred HHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhh
Confidence 433332222 122 25788999999999999999999887642 224445677788888888888887777666
Q ss_pred hC---CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeE
Q 005305 528 YG---MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574 (703)
Q Consensus 528 ~~---~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 574 (703)
.+ ..|.-.....-+.+.-+.+|+.+.-.++.+-+...|+.. .|--|
T Consensus 555 ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 555 KSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred hHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 53 334334556677788889999999999999999888865 34444
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.9e-08 Score=99.58 Aligned_cols=326 Identities=13% Similarity=0.016 Sum_probs=225.2
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccH-HHHHHHH
Q 005305 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGW-NTIIAGY 307 (703)
Q Consensus 229 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~-~~li~~~ 307 (703)
-|.+-+-......-+.|..+.|...+...+..- |-.-..|..| ..-..+.+.+..+....+..+...- --+..+|
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL---~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLEL---SELITDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHH---HHhhchHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 344433333344455666777777666655431 3333333333 3334455555555544443321111 1233456
Q ss_pred HHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--CchHHHHHHHhhHHhcCCHH-
Q 005305 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG--LDIVANSALVDFYSKWGRIE- 384 (703)
Q Consensus 308 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~Li~~y~k~g~~~- 384 (703)
....+.++++.-.......|++-+...-+-...+.-...++++|..+|+++.+..+- .|..+|+.++-.-..+..+.
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 666677888888888877776555544444444456678899999999999887421 25666766653322222222
Q ss_pred HHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhc
Q 005305 385 DARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDH 463 (703)
Q Consensus 385 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 463 (703)
-|..++ .+.+--+.|.-.+.+-|+-.++.++|...|++.++ +.|.. ..|+.+..-|....+...|.+-++.+++
T Consensus 318 LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd-- 392 (559)
T KOG1155|consen 318 LAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD-- 392 (559)
T ss_pred HHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--
Confidence 222222 22233345555667778888999999999999987 46665 6677777889999999999999999987
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHH
Q 005305 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541 (703)
Q Consensus 464 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 541 (703)
--+.|-..|-.|..+|.-.+.+.-|+-.|++. ..+| |...|.+|...|.+.++.++|+..+++++.....+..+|..|
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~L 472 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRL 472 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHH
Confidence 34557788999999999999999999999885 4455 778999999999999999999999999998777677899999
Q ss_pred HHHHHhCCChHHHHHHHHHHHh
Q 005305 542 LNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 542 ~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
+++|-+.++.++|...+++-.+
T Consensus 473 akLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 473 AKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999988664
No 48
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=3.5e-10 Score=118.25 Aligned_cols=275 Identities=15% Similarity=0.057 Sum_probs=211.3
Q ss_pred CHHHHHHHHhhcCC--CCcc-cHHHHHHHHHHcCCcHHHHHHHHHHHHCC--CCCCHhhHHHHHHHHhccCCHHHHHHHH
Q 005305 281 SIEDAQGVFDEMSE--KTTV-GWNTIIAGYALHGYSEEALDLYYEMRDSG--VKMDHFTFSMIIRICTRLASLEHAKQAH 355 (703)
Q Consensus 281 ~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 355 (703)
+..+|...|..++. .|+. ....+..+|...+++++|.++|+..++.. ..-+..+|+++|-.+-+ +-+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 46788888888664 2433 33456778999999999999999987742 11255678877755432 1122222
Q ss_pred H-HHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 005305 356 A-GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK---NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431 (703)
Q Consensus 356 ~-~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 431 (703)
. .+++. -+..+.+|.++.+.|.-+++.+.|.+.|++..+- ...+|+.+..-+.....+|.|+..|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 22332 2346789999999999999999999999998654 456788888888888999999999998875 556
Q ss_pred CH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 005305 432 NH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP-RAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAAL 507 (703)
Q Consensus 432 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 507 (703)
.. ..|..+...|.+.++++.|.-.|+.+.+ +.| +.....++...+-+.|+.++|++++++. ...| |+..---.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 55 6777888999999999999999998865 555 4556677778889999999999999984 2333 44444445
Q ss_pred HHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 508 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
...+...+++++|.+.++++.++-|++...|..++.+|.+.|+.+.|..-|.-|.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 5566778999999999999999999999999999999999999999999887776543
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=2.1e-09 Score=102.81 Aligned_cols=270 Identities=13% Similarity=0.120 Sum_probs=185.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCc------chHHHH
Q 005305 98 CSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDL------YMRNRV 171 (703)
Q Consensus 98 ~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~------~~~~~L 171 (703)
|-.=+.+.-++++++|+++|-+|.+.. +-+..+-.+|-+.+.+.|..+.|..+|+.+.++ ||. ...-.|
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL 113 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQL 113 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHH
Confidence 444444666778999999999998864 445566777888899999999999999999874 443 233456
Q ss_pred HHHHHhCCChHHHHHHHccCCCCCcc---cHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChh----hHHHHHHHHhcC
Q 005305 172 LLMHVRCGMMIDARRLFDEMPERNLV---SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGL 244 (703)
Q Consensus 172 i~~y~~~g~~~~A~~~f~~m~~~d~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~ 244 (703)
..=|...|-+|.|+.+|..+.+.+.. ....|+..|-+..+|++|++.-+++.+.+..+..+ -|.-+.......
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 67788899999999999988774333 45568899999999999999999998877665543 344555555666
Q ss_pred CChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcc----cHHHHHHHHHHcCCcHHHHHHH
Q 005305 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV----GWNTIIAGYALHGYSEEALDLY 320 (703)
Q Consensus 245 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~----~~~~li~~~~~~g~~~~A~~l~ 320 (703)
.+.+.|...+..+.+.. +..+.+.-.+.+.+...|+++.|.+.++.+.+.|.. +...|..+|.+.|++++.+..+
T Consensus 194 ~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 77888888887777765 445556666777788888888888888887766543 4566677888888888888888
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhH
Q 005305 321 YEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377 (703)
Q Consensus 321 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 377 (703)
.++.+....++.. ..+-..-....-.+.|.....+-++. .|+...+..||+.-
T Consensus 273 ~~~~~~~~g~~~~--l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 273 RRAMETNTGADAE--LMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHccCCccHH--HHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 7777653333322 22222222223333444433333332 35555555555543
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.6e-07 Score=94.33 Aligned_cols=359 Identities=13% Similarity=0.066 Sum_probs=221.5
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHH--HHH
Q 005305 161 FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFA--TMI 238 (703)
Q Consensus 161 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll 238 (703)
...|.+..-..--.+-+.|..+.|+..|-+....-+..|.+-+....-..+.+.+..+. .|...|..-+. -+.
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~-----~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILV-----VGLPSDMHWMKKFFLK 234 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHH-----hcCcccchHHHHHHHH
Confidence 34555444433445556788888888887776654555555443322222222222111 12221222111 233
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC------cccHHHHHHHHHHcCC
Q 005305 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT------TVGWNTIIAGYALHGY 312 (703)
Q Consensus 239 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~ 312 (703)
.++-.....+++.+-.......|++.+...-+-...++-...++++|+.+|+++...| ..+|+.++ |+++.+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 4555556777777777777777887777777766667777788888888888887643 34555544 333332
Q ss_pred cHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhh
Q 005305 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392 (703)
Q Consensus 313 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 392 (703)
. .+..+.+-...--+--+.|...+.+-|+-.++-+.|...|+.+++.+.. ...+|+-+.+-|....+...|.+.++.
T Consensus 313 s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 313 S--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred H--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 2 2222222111111223446666777777777788888888888876532 456777777888888888888888877
Q ss_pred cC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc
Q 005305 393 ML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468 (703)
Q Consensus 393 m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 468 (703)
.. .+|-..|-.+..+|.-.+.+.=|+-.|++..+ .+|+ ...|.+|...|.+.++.++|..-|.+... .| ..+
T Consensus 390 Avdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~-~~-dte 465 (559)
T KOG1155|consen 390 AVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL-LG-DTE 465 (559)
T ss_pred HHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh-cc-ccc
Confidence 64 35667788888888888888888888888776 4664 47778888888888888888888887776 22 234
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGA-------P-FKTTKN-MWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
...+..|.++|.+.++.++|...|++- + ..|... .-.-|..-+.+.+++++|.........-+|.
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 567778888888888888887776542 1 122221 1112334456777777777766666554443
No 51
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=1.2e-08 Score=97.72 Aligned_cols=268 Identities=15% Similarity=0.127 Sum_probs=160.4
Q ss_pred CCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-C--CCcHHHHHHHHHHHHhCCCHHHH
Q 005305 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMG-F--GDNVFVSCALIDMYSKCGSIEDA 285 (703)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~--~~~~~~~~~Li~~y~~~g~~~~A 285 (703)
+.++++|.++|-+|.+... -+..+-.+|.+.+.+.|..+.|.++|..+.++. + ..-......|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 4678899999999887421 133345567788888999999999998888753 1 11234556778889999999999
Q ss_pred HHHHhhcCCCCcc---cHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhh----HHHHHHHHhccCCHHHHHHHHHHH
Q 005305 286 QGVFDEMSEKTTV---GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT----FSMIIRICTRLASLEHAKQAHAGL 358 (703)
Q Consensus 286 ~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t----~~~ll~a~~~~~~~~~a~~~~~~~ 358 (703)
+.+|..+.+.+.. ..-.|+..|.+..+|++|++.-+++...+-.+..+- |.-+........+++.|...+..+
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 9999998774433 456688899999999999999998887765444332 122222222233444444444444
Q ss_pred HHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 005305 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438 (703)
Q Consensus 359 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 438 (703)
.+.+. +.+..--.+...+...|+++.|.+.++...+.+..--..+...
T Consensus 207 lqa~~--------------------------------~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 207 LQADK--------------------------------KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred HhhCc--------------------------------cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 33221 1122222233455566666666666666665432222345555
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHH
Q 005305 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI-RGAPFKTTKNMWAALLTACR 512 (703)
Q Consensus 439 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~a~~ 512 (703)
|..+|.+.|+.+++..++..+.+. .+....-..+.+.-....-.+.|...+ +.+..+|+...+..|+..-.
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhh
Confidence 666666666666666666666541 233333333444433333344444433 34555666666666666543
No 52
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=2e-11 Score=87.05 Aligned_cols=50 Identities=32% Similarity=0.680 Sum_probs=47.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 005305 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445 (703)
Q Consensus 396 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 445 (703)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.24 E-value=2.3e-09 Score=105.05 Aligned_cols=197 Identities=17% Similarity=0.111 Sum_probs=163.4
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 442 (703)
....+..+...|.+.|++++|...|++... .+...|..+...|...|++++|.+.|++..+.. ..+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456777888999999999999999998743 346678888899999999999999999998753 2245677778888
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 005305 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELG 520 (703)
Q Consensus 443 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a 520 (703)
+...|++++|.+.++...+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998863222334566777888999999999999999874 3334 456788888999999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
...+++.....|+++..+..++.++...|+.++|..+.+.+.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999988888888888999999999999999999888764
No 54
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.24 E-value=7.8e-08 Score=102.40 Aligned_cols=409 Identities=14% Similarity=0.071 Sum_probs=262.5
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHH-
Q 005305 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFA- 235 (703)
Q Consensus 160 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~- 235 (703)
.+..|..+|..|.-+..++|+++.+.+.|++... .....|+.+-..|.-.|....|+.+.+.-......|+..+-.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3567888999999999999999999999998754 345679999999999999999999998876554446544433
Q ss_pred HHHHHHh-cCCChHHHHHHHHHHHHh--CC--CCcHHHHHHHHHHHHhC-----------CCHHHHHHHHhhcCCCCccc
Q 005305 236 TMIRASA-GLELISVGKQLHSCALKM--GF--GDNVFVSCALIDMYSKC-----------GSIEDAQGVFDEMSEKTTVG 299 (703)
Q Consensus 236 ~ll~a~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~Li~~y~~~-----------g~~~~A~~~f~~m~~~~~~~ 299 (703)
..-+.|. +.+..++|..+-..++.. +. ...+..+-.+.-+|... ....++.+.+++..+.|...
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3334454 457777777777776662 21 11233444444444432 12345666666664432222
Q ss_pred HH---HHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 005305 300 WN---TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376 (703)
Q Consensus 300 ~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 376 (703)
++ -+.--|+..++.+.|++..++..+.+-.-+...|..+.-.++..+++..|..+.+.....- ..|-.....-+..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI 556 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence 22 2233467788999999999999887667777788877777888899999998888776531 1111111111122
Q ss_pred HHhcCCHHHHHHHhhhcC-------------------------------cCChh-hHHHHHHHHHhcCCHHHHHHHHHHH
Q 005305 377 YSKWGRIEDARHVFDKML-------------------------------CKNVI-SWNALIAGYGNHGRGEEAVELFEQM 424 (703)
Q Consensus 377 y~k~g~~~~A~~~f~~m~-------------------------------~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m 424 (703)
-..-++.++|......+. ..+.. ++..+ .+... -+...+..-.. |
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~l-s~l~a-~~~~~~~se~~-L 633 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYL-SSLVA-SQLKSAGSELK-L 633 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHH-HHHHH-hhhhhcccccc-c
Confidence 222344444433322220 01111 22222 11111 11111100000 1
Q ss_pred HHcCCC--cCH------HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-C
Q 005305 425 LLNGMR--PNH------VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-A 495 (703)
Q Consensus 425 ~~~g~~--p~~------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m 495 (703)
...-+. |+. ..|......+.+.+..+++...+.+..+ ..+-....|.-....+...|.++||.+.|.. .
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 111122 232 2234455677888888999877776654 2334456677777888899999999998876 4
Q ss_pred CCCCC-HHHHHHHHHHHHHcCChhHHHH--HHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCce
Q 005305 496 PFKTT-KNMWAALLTACRVNGNLELGKF--AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPAC 572 (703)
Q Consensus 496 ~~~p~-~~~~~~ll~a~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~ 572 (703)
...|+ +.+..++...+.+.|+...|.. ....+++++|.++.+|..|+.++.+.|+.++|.+-|+...+-.- ..|-.
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~-S~PV~ 790 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE-SNPVL 790 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc-CCCcc
Confidence 55675 5588899999999999888888 99999999999999999999999999999999999998775443 23433
Q ss_pred eEE
Q 005305 573 SWI 575 (703)
Q Consensus 573 s~~ 575 (703)
.|.
T Consensus 791 pFs 793 (799)
T KOG4162|consen 791 PFS 793 (799)
T ss_pred ccc
Confidence 443
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.23 E-value=2e-08 Score=99.23 Aligned_cols=281 Identities=15% Similarity=0.095 Sum_probs=176.0
Q ss_pred CCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 005305 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288 (703)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 288 (703)
.|++.+|+++..+-.+.+-.| ...|..-..+.-..|+.+.+-+++.++.+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888766554443 3446666677778899999999999888874467777888888889999999999888
Q ss_pred HhhcC---CCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHh-------hHHHHHHHHhccCCHHHHHHHHHHH
Q 005305 289 FDEMS---EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF-------TFSMIIRICTRLASLEHAKQAHAGL 358 (703)
Q Consensus 289 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------t~~~ll~a~~~~~~~~~a~~~~~~~ 358 (703)
.++.. .+++.........|.+.|++.+.+.++..|.+.|+--|+. ++..++.-+...+..+.-++.++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 77654 4577788899999999999999999999999988765543 3444444443333333333333333
Q ss_pred HHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 005305 359 VRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438 (703)
Q Consensus 359 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 438 (703)
.+. .. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+- .
T Consensus 256 pr~-lr-------------------------------~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~ 299 (400)
T COG3071 256 PRK-LR-------------------------------NDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----C 299 (400)
T ss_pred cHH-hh-------------------------------cChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----H
Confidence 221 12 23333344445555555555555555555555555441 1
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCh
Q 005305 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKTTKNMWAALLTACRVNGNL 517 (703)
Q Consensus 439 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~ll~a~~~~g~~ 517 (703)
.+-.+.+.++.+.-.+..+...+.++..| ..+.+|...|.+.+.+.+|.+.|+. +...|+...|.-+..++.+.|+.
T Consensus 300 ~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 300 RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCCh
Confidence 22234455555555555554444333333 4455566666666666666666654 34456666666666666666666
Q ss_pred hHHHHHHHHHh
Q 005305 518 ELGKFAAEKLY 528 (703)
Q Consensus 518 ~~a~~~~~~~~ 528 (703)
++|.+..++.+
T Consensus 378 ~~A~~~r~e~L 388 (400)
T COG3071 378 EEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHH
Confidence 66666555554
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=3.1e-11 Score=86.12 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=48.2
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhc
Q 005305 194 RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243 (703)
Q Consensus 194 ~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 243 (703)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 57
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.6e-07 Score=97.16 Aligned_cols=432 Identities=16% Similarity=0.123 Sum_probs=266.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHH--HHHHHH--hCC
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR--VLLMHV--RCG 179 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~--Li~~y~--~~g 179 (703)
+.++|++++|...-..+...+ +.|...+..-+-+..+.+.+++|..+... .+. ..+++. +=.+|+ +.+
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred hccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHHcc
Confidence 788899999999999998764 55667777777788899999998854443 221 112222 345665 679
Q ss_pred ChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHH
Q 005305 180 MMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC-GSRTFATMIRASAGLELISVGKQLHSCAL 258 (703)
Q Consensus 180 ~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 258 (703)
..++|++.++.....|..+-..-...+.+.|++++|+++|+.+.+.+..- |...-..++.+-+.. .+. .+.
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~----~~q 165 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ----LLQ 165 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH----HHH
Confidence 99999999996665555566666677889999999999999997765432 222222232222111 110 111
Q ss_pred HhCCCC--cHHHHHHHHHHHHhCCCHHHHHHHHhhc--------CCCCcc----------cHHHHHHHHHHcCCcHHHHH
Q 005305 259 KMGFGD--NVFVSCALIDMYSKCGSIEDAQGVFDEM--------SEKTTV----------GWNTIIAGYALHGYSEEALD 318 (703)
Q Consensus 259 ~~g~~~--~~~~~~~Li~~y~~~g~~~~A~~~f~~m--------~~~~~~----------~~~~li~~~~~~g~~~~A~~ 318 (703)
.....| +-..+......+...|++.+|+++++.. .+.|.- .--.|...+...|+.++|.+
T Consensus 166 ~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~ 245 (652)
T KOG2376|consen 166 SVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASS 245 (652)
T ss_pred hccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 111112 2233333556677889999999999876 221111 12234556778999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHH---HHHhccCCHHH--HH------------HHHHHHHHcCCCCchHHHHHHHhhHHhcC
Q 005305 319 LYYEMRDSGVKMDHFTFSMII---RICTRLASLEH--AK------------QAHAGLVRHGFGLDIVANSALVDFYSKWG 381 (703)
Q Consensus 319 l~~~m~~~g~~pd~~t~~~ll---~a~~~~~~~~~--a~------------~~~~~~~~~g~~~~~~~~~~Li~~y~k~g 381 (703)
++....... .+|........ .+...-.++.. .. .....+.+. -......-++++.+|. +
T Consensus 246 iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i~~N~~lL~l~t--n 321 (652)
T KOG2376|consen 246 IYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAIYRNNALLALFT--N 321 (652)
T ss_pred HHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHh--h
Confidence 999998875 44553322222 22222111111 11 111111110 1112334456666665 4
Q ss_pred CHHHHHHHhhhcCcCC-hhhHHHHHHH-HH-hcCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCCHHHHHHHH
Q 005305 382 RIEDARHVFDKMLCKN-VISWNALIAG-YG-NHGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERGWEIF 456 (703)
Q Consensus 382 ~~~~A~~~f~~m~~~~-~~~~~~li~~-~~-~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 456 (703)
..+.+.++....+... ...+.+++.. +. +...+.+|.+++...-+. .|.. +.....+......|+++.|.+++
T Consensus 322 k~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 322 KMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5677777777775432 3334444433 32 223467788887776654 4444 34444455567889999999999
Q ss_pred H--------HhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHHcCChhH
Q 005305 457 Q--------SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA--------PFKTT-KNMWAALLTACRVNGNLEL 519 (703)
Q Consensus 457 ~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~a~~~~g~~~~ 519 (703)
. .+.+ .+..| .+..+++.+|.+.++-+-|..++.+. ..++. ..+|.-+..--.++|+.++
T Consensus 400 ~~~~~~~~ss~~~-~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e 476 (652)
T KOG2376|consen 400 SLFLESWKSSILE-AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE 476 (652)
T ss_pred HHHhhhhhhhhhh-hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence 8 4443 33444 45567888999988777777666542 22222 2234444444467899999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 520 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
|...++++.+..|++....+.++.+|++. +.+.|..+-+.+
T Consensus 477 a~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 477 ASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 99999999999999999999999999876 456666655443
No 58
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.19 E-value=1.9e-06 Score=89.98 Aligned_cols=472 Identities=14% Similarity=0.116 Sum_probs=255.5
Q ss_pred hhhhhccccccCCCCcccchhhcccccCccCCCC---CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHH
Q 005305 60 CLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKP---SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDA 135 (703)
Q Consensus 60 ~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p---~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 135 (703)
.+|-.-+....+.|.+..- ++.|+.....-| ....|...+. ..+.+-++-++.+|++-.+-. |.. -..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~t---R~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~---P~~--~ee 174 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRT---RRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA---PEA--REE 174 (835)
T ss_pred HHHHHHHHHHHhcchHHHH---HHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC---HHH--HHH
Confidence 4566666666777888888 888886543311 2346999999 888899999999999987743 433 566
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhC------CCCCcchHHHHHHHHHhCCChH---HHHHHHccCCC--CC--cccHHHH
Q 005305 136 LISACIGLRSIREVKRVFSYMLSTG------FEPDLYMRNRVLLMHVRCGMMI---DARRLFDEMPE--RN--LVSCNMI 202 (703)
Q Consensus 136 ll~~~~~~~~~~~a~~l~~~~~~~g------~~~~~~~~~~Li~~y~~~g~~~---~A~~~f~~m~~--~d--~~~~~~l 202 (703)
-+..+...+++++|.+.++.++... .+.+...|+-+.+..++.-+.- ....+++.+.. +| ...|++|
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence 6777888999999999998887431 1334445555555555432221 22334444433 22 2356667
Q ss_pred HHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhc---------------------------------------
Q 005305 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG--------------------------------------- 243 (703)
Q Consensus 203 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--------------------------------------- 243 (703)
.+-|.+.|.+++|.++|++....-.. ..-|..+..+|+.
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v~t--vrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTVMT--VRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhee--hhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 77777777777776666655433111 1111111111111
Q ss_pred ---------------------------CCChHHHHHHHHHHHHhC-----CCCcHHHHHHHHHHHHhCCCHHHHHHHHhh
Q 005305 244 ---------------------------LELISVGKQLHSCALKMG-----FGDNVFVSCALIDMYSKCGSIEDAQGVFDE 291 (703)
Q Consensus 244 ---------------------------~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 291 (703)
.|+..+-...+.++++.- ...-...|..+...|-..|+++.|+.+|++
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 122333333444444321 011124566777777778888888888877
Q ss_pred cCCCCc-------ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCC----------CC-------CHhhHHHHHHHHhccCC
Q 005305 292 MSEKTT-------VGWNTIIAGYALHGYSEEALDLYYEMRDSGV----------KM-------DHFTFSMIIRICTRLAS 347 (703)
Q Consensus 292 m~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----------~p-------d~~t~~~ll~a~~~~~~ 347 (703)
..+-+- .+|-.-...=.+..+++.|+++.++....-- .| +...|+..++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 654221 2344444445566677777776665532110 01 11123333333444566
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC----cCChh-hHHHHHHHHHhc---CCHHHHHH
Q 005305 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML----CKNVI-SWNALIAGYGNH---GRGEEAVE 419 (703)
Q Consensus 348 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~----~~~~~-~~~~li~~~~~~---g~~~~A~~ 419 (703)
++..+.+++.++...+... .+.-...-.+-...-++++.+++++-+ -|++. .||..+.-+.+. ...+.|..
T Consensus 493 festk~vYdriidLriaTP-qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATP-QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 7777777777777554422 222222222334455677777777652 34443 677766655442 24677888
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHH--HccCCHHHHHHHHHHhHhhcCCCCc--hHHHHHHHHHHHhc-------CChHHH
Q 005305 420 LFEQMLLNGMRPNHVTFLAVLSAC--SRSGLSERGWEIFQSMSRDHKIKPR--AMHYACMIELLGRE-------GLLDEA 488 (703)
Q Consensus 420 l~~~m~~~g~~p~~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~-------g~~~~A 488 (703)
+|++.++ |..|...-+.-|+-|- -.-|....|..+++++.. ++++. ...|+..|.--+.. +-+++|
T Consensus 572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYeka 648 (835)
T KOG2047|consen 572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKA 648 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHH
Confidence 8888777 6666654443343332 234677777777777654 44443 23455444321111 223333
Q ss_pred HHHHHhCCCCCCHHHH---HHHHHHHHHcCChhHHHHHHHHHhCCC-CC-CcchHHHHHHHHHhCCCh
Q 005305 489 FALIRGAPFKTTKNMW---AALLTACRVNGNLELGKFAAEKLYGME-PE-KLSNYVVLLNIYNSSGKL 551 (703)
Q Consensus 489 ~~~~~~m~~~p~~~~~---~~ll~a~~~~g~~~~a~~~~~~~~~~~-p~-~~~~~~~l~~~y~~~g~~ 551 (703)
++. + ||..+- --....-.+.|..+.|+.++...-++- |. ++..|.+.=+.-.+.|+-
T Consensus 649 Ie~---L---p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGne 710 (835)
T KOG2047|consen 649 IES---L---PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNE 710 (835)
T ss_pred HHh---C---ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCH
Confidence 322 1 332221 122223345667777777666555443 32 334455665566666663
No 59
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.19 E-value=7.3e-10 Score=118.68 Aligned_cols=265 Identities=16% Similarity=0.170 Sum_probs=193.6
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCC
Q 005305 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN 397 (703)
Q Consensus 318 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~ 397 (703)
..+-.|...|+.||.+||.++|.-|+..|+.+.|- +|..|.-...+.+..++++++......++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45678889999999999999999999999999999 9999988888888999999999999999988876 677
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
..+|+.|..+|.++|+... |+...+ -+..+...++..|....-..++..+.-..+.-||... .+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHH
Confidence 8899999999999999754 333222 2223445566666666666666554333455566544 455
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHH
Q 005305 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNG-NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 556 (703)
...-.|.++.++++...+|...........+.-+.... .+++-....+...+ .|+ +.+|..+...-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~-s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APT-SETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCC-hHHHHHHHHHHHhcCchhhHHH
Confidence 56677888899999988875211111111344444333 33444444444445 565 7899999999999999999999
Q ss_pred HHHHHHhCCCccCCceeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHHHcCcccCCCccCC
Q 005305 557 VIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEKTLLP 622 (703)
Q Consensus 557 ~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~ 622 (703)
++..|+++|+...+..-|-.+ .|.... .-++.+++-|++.|+.|+..|...
T Consensus 226 ll~emke~gfpir~HyFwpLl--------~g~~~~-------q~~e~vlrgmqe~gv~p~seT~ad 276 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLL--------LGINAA-------QVFEFVLRGMQEKGVQPGSETQAD 276 (1088)
T ss_pred HHHHHHHcCCCcccccchhhh--------hcCccc-------hHHHHHHHHHHHhcCCCCcchhHH
Confidence 999999999988888777533 231111 225678889999999999987653
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.7e-07 Score=96.57 Aligned_cols=258 Identities=15% Similarity=0.070 Sum_probs=200.7
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHh
Q 005305 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379 (703)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k 379 (703)
...-..-+...+++.+.++++....+. .++....+..-|..+...|+...-..+=..+++. .+....+|-++.-.|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence 333445566789999999999998875 3556666666666777777766665555556654 45567889999999999
Q ss_pred cCCHHHHHHHhhhcCcCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHH
Q 005305 380 WGRIEDARHVFDKMLCKN---VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456 (703)
Q Consensus 380 ~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 456 (703)
.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. +.-...-+.-+..-|.+.++.+.|.++|
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff 403 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFF 403 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999875433 358999999999999999999999887663 1112233444555688899999999999
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP--------FKT-TKNMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 457 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
..... -.+.|+..++-+.-+.-..+.+.+|...|+... .++ -..+|+.|..+|++.+.+++|+..+++.
T Consensus 404 ~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 404 KQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 98864 233455566666666667788999988887531 122 3457889999999999999999999999
Q ss_pred hCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 528 ~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
+.+.|.++.+|.+++-+|...|+++.|.+.|.+..
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999998875
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.12 E-value=9.7e-08 Score=94.54 Aligned_cols=291 Identities=13% Similarity=0.037 Sum_probs=181.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHH
Q 005305 107 NKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARR 186 (703)
Q Consensus 107 ~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 186 (703)
.|++..|.++..+-.+.+ .-....|..-..+.-+.|+.+.+-+...++.+..-.++..+.-+........|+.+.|+.
T Consensus 97 eG~~~qAEkl~~rnae~~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 577777777777666555 222334455555556667777777777777665334445555566666666777777666
Q ss_pred HHccC---CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 005305 187 LFDEM---PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263 (703)
Q Consensus 187 ~f~~m---~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 263 (703)
-.++. ..++...-.....+|.+.|++.+...+...|.+.|.--|+.. .+
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~----------- 226 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------AR----------- 226 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HH-----------
Confidence 55543 335566666667777777777777777777766665433220 00
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 005305 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340 (703)
Q Consensus 264 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 340 (703)
-...+++.+++-....+..+.-...+++.+. .++..-.+++.-+.+.|+.++|.++..+-.+.+..|+- ..+-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHH
Confidence 0112344444444433444444445555543 24555556666777777777777777777776655552 2223
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC--cCChhhHHHHHHHHHhcCCHHHHH
Q 005305 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML--CKNVISWNALIAGYGNHGRGEEAV 418 (703)
Q Consensus 341 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~ 418 (703)
.+.+.++.+.-.+..+.-.+.. +.++..+.+|...|.+.+.+.+|...|+... .++..+|+-+..+|.+.|+..+|.
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 4455666666666555555532 2345788888888999999999999888763 578888988889999999999998
Q ss_pred HHHHHHHHcCCCcC
Q 005305 419 ELFEQMLLNGMRPN 432 (703)
Q Consensus 419 ~l~~~m~~~g~~p~ 432 (703)
+.+++....-.+|+
T Consensus 382 ~~r~e~L~~~~~~~ 395 (400)
T COG3071 382 QVRREALLLTRQPN 395 (400)
T ss_pred HHHHHHHHHhcCCC
Confidence 88888765433343
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.08 E-value=8.7e-08 Score=101.62 Aligned_cols=230 Identities=20% Similarity=0.187 Sum_probs=164.3
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHc-----CC-CCch-HHHHHHHhhHHhcCCHHHHHHHhhhcCc----------
Q 005305 333 FTFSMIIRICTRLASLEHAKQAHAGLVRH-----GF-GLDI-VANSALVDFYSKWGRIEDARHVFDKMLC---------- 395 (703)
Q Consensus 333 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~Li~~y~k~g~~~~A~~~f~~m~~---------- 395 (703)
.|...+...|...|+++.|..+++..++. |. .|.+ ...+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45555777788888888888887777653 21 1222 2234467788888888888888887721
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCC-cCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcC--C
Q 005305 396 K-NVISWNALIAGYGNHGRGEEAVELFEQMLL-----NGMR-PNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHK--I 465 (703)
Q Consensus 396 ~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~ 465 (703)
| -..+++.|...|...|++++|...+++..+ .|.. |.. .-++.+...|...+.+++|..+++...+.+. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 234677777788888988888877776553 1222 233 3456666778899999999999887765333 2
Q ss_pred CCc----hHHHHHHHHHHHhcCChHHHHHHHHhCC-------C--CCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhC--
Q 005305 466 KPR----AMHYACMIELLGREGLLDEAFALIRGAP-------F--KTT-KNMWAALLTACRVNGNLELGKFAAEKLYG-- 529 (703)
Q Consensus 466 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~--~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-- 529 (703)
.++ ..+++.|...|-..|++++|++++++.- . .+. ...++.|..+|.+.++.++|.+.+.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 4678999999999999999999998641 1 222 34677888899999999988888777653
Q ss_pred --CC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 530 --ME---PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 530 --~~---p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
.. |+-..+|..|+-+|.+.|++++|.++.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23 4445678899999999999999999998875
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=2.5e-06 Score=82.94 Aligned_cols=443 Identities=14% Similarity=0.082 Sum_probs=237.5
Q ss_pred HH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCC
Q 005305 102 EK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM 180 (703)
Q Consensus 102 i~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 180 (703)
+. +..+.++..|+.+++--...+ -.....+-.-+..++...|++++|...+..+.... .++..++..|.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~-~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLD-REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccc-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 45 677778888888877665443 12222233334445567788888888888777644 4555566556655556677
Q ss_pred hHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005305 181 MIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM 260 (703)
Q Consensus 181 ~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 260 (703)
+.+|..+-...+. +...-..|...-.+-++-++-+.+-..+... ...-.++.+..-....+++|..++..++..
T Consensus 107 Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888777665542 2222222333334445544444443333221 111122222222233466677777666654
Q ss_pred CCCCcHHHHHH-HHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHH
Q 005305 261 GFGDNVFVSCA-LIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336 (703)
Q Consensus 261 g~~~~~~~~~~-Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 336 (703)
. |+-...|. +.-.|.|..-++-+.++++--.+ .+++.-|.......+.=...-|.+-.+++...+-. .+.+
T Consensus 181 n--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~--~~~f- 255 (557)
T KOG3785|consen 181 N--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ--EYPF- 255 (557)
T ss_pred C--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc--cchh-
Confidence 2 33222222 23345666666666555543322 23344444444333322222233333333332211 1111
Q ss_pred HHHHHHh----ccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcC
Q 005305 337 MIIRICT----RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG 412 (703)
Q Consensus 337 ~ll~a~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 412 (703)
.-..|. --.+-+.|.+++--+.+. . +..--.|+-.|.+.+++++|..+..++....+.-|-.-...++..|
T Consensus 256 -~~~l~rHNLVvFrngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 256 -IEYLCRHNLVVFRNGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALG 330 (557)
T ss_pred -HHHHHHcCeEEEeCCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhh
Confidence 111111 112334555555544442 1 2233456777889999999999888875544443322222333344
Q ss_pred C-------HHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCC
Q 005305 413 R-------GEEAVELFEQMLLNGMRPNHV-TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484 (703)
Q Consensus 413 ~-------~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 484 (703)
+ ..-|.+.|+-.-+.+..-|.+ ---++.+++.-...+++...++..+.. +-...|...+ .+..+++..|+
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~-N~AQAk~atgn 408 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNL-NLAQAKLATGN 408 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhh-HHHHHHHHhcC
Confidence 3 344555555444444332321 122333444445567888888888876 5444455444 46788888999
Q ss_pred hHHHHHHHHhCCC--CCCHHHHHHHHHHH-HHcCChhHHHHHHHHHhCCCCCC-cchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 485 LDEAFALIRGAPF--KTTKNMWAALLTAC-RVNGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 485 ~~~A~~~~~~m~~--~p~~~~~~~ll~a~-~~~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
+.+|+++|-++.. -.|..+|.+++.-| .+.+..+.|+.++-+.- .|.+ ......+++-+.+++.+--|.+.|+.
T Consensus 409 y~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~ 486 (557)
T KOG3785|consen 409 YVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDE 486 (557)
T ss_pred hHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999877532 13677887777765 56677777776554321 2322 23344667778888888888888888
Q ss_pred HHhCCC
Q 005305 561 LRRKGL 566 (703)
Q Consensus 561 m~~~~~ 566 (703)
+...+.
T Consensus 487 lE~lDP 492 (557)
T KOG3785|consen 487 LEILDP 492 (557)
T ss_pred HHccCC
Confidence 775543
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.03 E-value=5.8e-08 Score=107.75 Aligned_cols=260 Identities=11% Similarity=-0.020 Sum_probs=182.3
Q ss_pred CcccHHHHHHHHHH-----cCCcHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHh---------ccCCHHHHHHHHHHHHH
Q 005305 296 TTVGWNTIIAGYAL-----HGYSEEALDLYYEMRDSGVKMDH-FTFSMIIRICT---------RLASLEHAKQAHAGLVR 360 (703)
Q Consensus 296 ~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~---------~~~~~~~a~~~~~~~~~ 360 (703)
+...|...+.+-.. .+..++|+.+|++..+. .|+. ..+..+..++. ..++.++|...++.+++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 34445555554321 13357899999988875 4543 34444433332 23447899999999988
Q ss_pred cCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH-HH
Q 005305 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--K-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV-TF 436 (703)
Q Consensus 361 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~ 436 (703)
... .+...+..+..++...|++++|...|++... | +...|..+...|...|++++|+..+++..+. .|+.. .+
T Consensus 333 ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 753 3677888888999999999999999998743 3 4567888889999999999999999999884 55542 33
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHH
Q 005305 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKP-RAMHYACMIELLGREGLLDEAFALIRGA-PFKTTKN-MWAALLTACRV 513 (703)
Q Consensus 437 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~ 513 (703)
..++..+...|++++|...++++.+. .+| ++..+..+...|...|+.++|.+.+.++ +..|+.. .++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 34445566789999999999988762 234 4555777888899999999999999885 3345543 44555556666
Q ss_pred cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 514 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
.| +.+...++++++..-..+..+..+..+|+-.|+-+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66 4777777777643322222333477788888988888877 7777654
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.03 E-value=1.9e-08 Score=96.33 Aligned_cols=231 Identities=16% Similarity=0.127 Sum_probs=178.5
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhc
Q 005305 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380 (703)
Q Consensus 301 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~ 380 (703)
+.|..+|.+.|.+.+|.+.|+.-.+. .|-+.||..+-.+|.+..+++.|..++.+-++. ++.|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56788899999999999998887776 566678888888899999999998888887775 444665566677777788
Q ss_pred CCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 005305 381 GRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457 (703)
Q Consensus 381 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 457 (703)
++.++|.++++...+ .|+.+.-++..+|--.++++-|+..++++.+.|+. +...|..+.-+|.-.+.+|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 888888888887743 35566666677888888888899999988888876 66777777778888888877777776
Q ss_pred HhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch
Q 005305 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 458 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 537 (703)
+... . .-+.++|-+ +|-.|.......||+..|.+.++-.+.-+|++..+
T Consensus 383 RAls-t------------------at~~~~aaD------------vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 383 RALS-T------------------ATQPGQAAD------------VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HHHh-h------------------ccCcchhhh------------hhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 6654 1 112222322 34444444556788999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 538 ~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
++.|+-+-.+.|++++|..+++.......
T Consensus 432 lnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 432 LNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred HHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 99999999999999999999998876543
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.01 E-value=5.7e-08 Score=98.70 Aligned_cols=211 Identities=17% Similarity=0.107 Sum_probs=148.7
Q ss_pred CCHHHHHHHHHHHHHcC-CCC--chHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHH
Q 005305 346 ASLEHAKQAHAGLVRHG-FGL--DIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVE 419 (703)
Q Consensus 346 ~~~~~a~~~~~~~~~~g-~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 419 (703)
+..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++... .+...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34556666666666532 222 245677788889999999999999988743 456789999999999999999999
Q ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--
Q 005305 420 LFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP-- 496 (703)
Q Consensus 420 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-- 496 (703)
.|++..+ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++..
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999987 46654 6777888888899999999999999876 34543322222233456788999999996532
Q ss_pred CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHh-------CCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 497 FKTTKNMWAALLTACRVNGNLELGKFAAEKLY-------GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 497 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
..|+ .|.. .......|+...+. .++.+. ++.|+.+.+|..|+.+|.+.|++++|...+++..+.+
T Consensus 195 ~~~~--~~~~-~~~~~~lg~~~~~~-~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKE--QWGW-NIVEFYLGKISEET-LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCcc--ccHH-HHHHHHccCCCHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2233 2321 22233455554432 333333 3445566789999999999999999999999988654
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.01 E-value=8e-08 Score=94.04 Aligned_cols=191 Identities=13% Similarity=-0.004 Sum_probs=118.8
Q ss_pred cccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 005305 95 AGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLL 173 (703)
Q Consensus 95 ~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~ 173 (703)
...|..+.. +...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+....+.. +.+...+..+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 445666667 899999999999999988764 4456777788888888999999999999888764 344556667777
Q ss_pred HHHhCCChHHHHHHHccCCC-----CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChH
Q 005305 174 MHVRCGMMIDARRLFDEMPE-----RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS 248 (703)
Q Consensus 174 ~y~~~g~~~~A~~~f~~m~~-----~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 248 (703)
.|...|++++|.+.|++... .+...|..+...+...|++++|...|.+....... +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 77777888888877776643 12234555556666666666666666665543211 2334444444445555555
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHh
Q 005305 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290 (703)
Q Consensus 249 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 290 (703)
+|...+..+.+. .+.+...+..+...+...|+.++|..+++
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 555555544443 12233333344444444444444444433
No 68
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.00 E-value=2.2e-05 Score=82.39 Aligned_cols=426 Identities=14% Similarity=0.139 Sum_probs=268.0
Q ss_pred hhHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhC
Q 005305 131 STYDALISACIGLRSIREVKRVFSYMLST-GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209 (703)
Q Consensus 131 ~t~~~ll~~~~~~~~~~~a~~l~~~~~~~-g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~ 209 (703)
..|..-+.....++++..-+..|+..+.. .+.....+|...+......|-.+-+.++++....-++..-+..|..++..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~ 182 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKS 182 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 45666677777888888888888887764 23334567777788888888888888888888777777778888888889
Q ss_pred CChhHHHHHHHHhHHcC------CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC--CCc--HHHHHHHHHHHHhC
Q 005305 210 GDYLEAFLLFLDLWEEF------SDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF--GDN--VFVSCALIDMYSKC 279 (703)
Q Consensus 210 g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~Li~~y~~~ 279 (703)
+++++|-+.+...+... .+.+...|.-+....++..+.-...++ +.+++.|+ -+| ...|++|.+-|.+.
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 99998888887775421 233444566555555555443333322 22333332 223 46899999999999
Q ss_pred CCHHHHHHHHhhcCCC--CcccHHHHHHHHHHcC----------------C------cHHHHHHHHHHHHCCC-------
Q 005305 280 GSIEDAQGVFDEMSEK--TTVGWNTIIAGYALHG----------------Y------SEEALDLYYEMRDSGV------- 328 (703)
Q Consensus 280 g~~~~A~~~f~~m~~~--~~~~~~~li~~~~~~g----------------~------~~~A~~l~~~m~~~g~------- 328 (703)
|.+++|..+|++.... .+.-++.+..+|++-. + .+-.+.-|+.+...+.
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999886543 3333444444444321 1 1122233333332210
Q ss_pred ----CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC------chHHHHHHHhhHHhcCCHHHHHHHhhhcCcCCh
Q 005305 329 ----KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL------DIVANSALVDFYSKWGRIEDARHVFDKMLCKNV 398 (703)
Q Consensus 329 ----~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~------~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~ 398 (703)
+-+..++..-.. ...|+..+-...+.++++. +.| -...|..+.+.|-..|+++.|+.+|++..+-+-
T Consensus 342 LRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 111122222211 1234566666777777763 222 235788899999999999999999999855332
Q ss_pred -------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------CCcC-H------HHHHHHHHHHHccCCHHHHHH
Q 005305 399 -------ISWNALIAGYGNHGRGEEAVELFEQMLLNG----------MRPN-H------VTFLAVLSACSRSGLSERGWE 454 (703)
Q Consensus 399 -------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------~~p~-~------~t~~~ll~a~~~~g~~~~a~~ 454 (703)
..|-.-...=.++.+++.|+++.+...... -.|- . ..|...+.---..|-++..+.
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 244444455567888999999888765321 1111 1 123333444445577788888
Q ss_pred HHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCC--CCCHH-HHHHHHHHHH-H--cCChhHHHHHHHHH
Q 005305 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APF--KTTKN-MWAALLTACR-V--NGNLELGKFAAEKL 527 (703)
Q Consensus 455 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~--~p~~~-~~~~ll~a~~-~--~g~~~~a~~~~~~~ 527 (703)
+++++..-.-..|.... ...-.+....-++++.+.+++ ++. -|++. .|++.|.-+. + ....+.|+.+|+++
T Consensus 499 vYdriidLriaTPqii~--NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 499 VYDRIIDLRIATPQIII--NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHhcCCHHHHH--HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 88888774333444322 223345567788999999987 332 45554 8888887663 2 24789999999999
Q ss_pred hCCCCCCc--chHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 528 YGMEPEKL--SNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 528 ~~~~p~~~--~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
++.-|..- ..|...+..--+-|.-..|.+++++..
T Consensus 577 L~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 577 LDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99877421 224344444455688888888888754
No 69
>PRK12370 invasion protein regulator; Provisional
Probab=98.99 E-value=7.1e-08 Score=107.09 Aligned_cols=210 Identities=15% Similarity=0.038 Sum_probs=129.1
Q ss_pred hhHHHHHHHHHHHcCCCCCChhhHHHHHHHHh---------ccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCC
Q 005305 110 YREALELFEILEFEGGFDVGSSTYDALISACI---------GLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM 180 (703)
Q Consensus 110 ~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~---------~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 180 (703)
.++|+.+|++..+.. +-+...|..+..++. ..+++++|...++.+++.. +.+...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 567888888877654 223344444433332 2234677777777777664 4455666677777777788
Q ss_pred hHHHHHHHccCCC--C-CcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHH
Q 005305 181 MIDARRLFDEMPE--R-NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCA 257 (703)
Q Consensus 181 ~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 257 (703)
+++|...|++..+ | +...|..+...+...|++++|+..|++..+....+ ...+..++..+...|++++|...+..+
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 8888888877554 3 34466677777777888888888888776653321 112223333445567777777777776
Q ss_pred HHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC---cccHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 005305 258 LKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT---TVGWNTIIAGYALHGYSEEALDLYYEMRD 325 (703)
Q Consensus 258 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 325 (703)
.+...+.++..+..+...|...|+.++|...+.++...+ ...++.+...|.+.| ++|...++.+.+
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 655423345556667777777777777777777765432 233455555556555 366666666544
No 70
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.97 E-value=6.2e-06 Score=81.91 Aligned_cols=269 Identities=13% Similarity=0.019 Sum_probs=157.5
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHH---HHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHH
Q 005305 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI---IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSM 337 (703)
Q Consensus 261 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 337 (703)
-++.|+....++.+.|...|+.++|...|++...-|+.+..+| ..-+.+.|+.+..-.+...+.... +-....|-.
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 3566777777888888888888888888877654444333222 122345667666666665554421 111112222
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC--c-CChhhHHHHHHHHHhcCCH
Q 005305 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML--C-KNVISWNALIAGYGNHGRG 414 (703)
Q Consensus 338 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~-~~~~~~~~li~~~~~~g~~ 414 (703)
-+...-...+++.|..+-+..++.... +...+-.-...+...|+.++|.-.|+... . -+..+|.-|+..|...|.+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 222223445566666666665554321 23333333345556677777777777653 2 3667777777777777777
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHH-HHHHc-cCCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCChHHHHHH
Q 005305 415 EEAVELFEQMLLNGMRPNHVTFLAVL-SACSR-SGLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLLDEAFAL 491 (703)
Q Consensus 415 ~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~-~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 491 (703)
.+|+.+-++.... +.-+..+++.+. ..|.- ..--++|..+++...+ +.|+ ....+.+..++.+.|..+++..+
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 7777766655442 222334444331 22222 2234667777666543 4454 33445566667777777777777
Q ss_pred HHh-CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCc
Q 005305 492 IRG-APFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535 (703)
Q Consensus 492 ~~~-m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 535 (703)
+++ +...||....+.|....+..+.+++|...+..++.++|++-
T Consensus 461 Le~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 461 LEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 776 44466777777777777777777777777777777777753
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=2.6e-06 Score=88.02 Aligned_cols=272 Identities=14% Similarity=0.059 Sum_probs=134.5
Q ss_pred HHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHH
Q 005305 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDA 285 (703)
Q Consensus 206 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 285 (703)
+...+++.+.+++++...+.. ++....+..-|..+...|+..+-.-+-..+++. .|....+|-++.-.|.-.|+.++|
T Consensus 254 ~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHH
Confidence 334455555555555544331 122222333333444444444333333333332 234444555555555555555555
Q ss_pred HHHHhhcCCCC---cccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 005305 286 QGVFDEMSEKT---TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG 362 (703)
Q Consensus 286 ~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 362 (703)
++.|.....-| ...|-.....|+-.|..++|+..+...-+. ++-....+--+---|.+.++++.|.+.|.++....
T Consensus 332 Rry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 332 RRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 55554433221 224555555555555555555544443321 00001111111222334444444444444444331
Q ss_pred CCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCc-CHHHH
Q 005305 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN----G-MRP-NHVTF 436 (703)
Q Consensus 363 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~p-~~~t~ 436 (703)
+.|+.+.+-+.-++.. .+.+.+|..+|+..+.. + -.| -..++
T Consensus 411 -P~Dplv~~Elgvvay~-------------------------------~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~ 458 (611)
T KOG1173|consen 411 -PSDPLVLHELGVVAYT-------------------------------YEEYPEALKYFQKALEVIKSVLNEKIFWEPTL 458 (611)
T ss_pred -CCcchhhhhhhheeeh-------------------------------HhhhHHHHHHHHHHHHHhhhccccccchhHHH
Confidence 2234444444433333 44455555555544420 0 011 33456
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHHHHHHHHHHHHHc
Q 005305 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKTTKNMWAALLTACRVN 514 (703)
Q Consensus 437 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~ll~a~~~~ 514 (703)
+.|..+|.+.+.+++|...|+.... -.+.+..++.++.-.|...|+++.|.+.|.+ +..+||..+-..++.-+...
T Consensus 459 ~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 459 NNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 7777777777888888877777765 3455677777777777788888888888776 45677777666666655443
No 72
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.93 E-value=4.8e-06 Score=89.63 Aligned_cols=296 Identities=16% Similarity=0.146 Sum_probs=158.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCC----
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG---- 179 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g---- 179 (703)
+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.+ +.|..-|..|..+..-..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence 56778888888888775443 33344555566677778888888888888888875 334444455555442221
Q ss_pred -ChHHHHHHHccCCCCC--cccHHHHHHHHHhCCChh-HHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 005305 180 -MMIDARRLFDEMPERN--LVSCNMIIAGMIDSGDYL-EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255 (703)
Q Consensus 180 -~~~~A~~~f~~m~~~d--~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 255 (703)
..+....+++++.... ..+.-.+.-.+.....+. .+...+..+..+|+++ +|+.+-..+......+-..++..
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence 3444455555543311 111111111111111121 2233344444555432 23333322322221111111111
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhh-cCCCCcccH--HHHHHHHHHcCCcHHHHHHHHHHHHCCCCCC-
Q 005305 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE-MSEKTTVGW--NTIIAGYALHGYSEEALDLYYEMRDSGVKMD- 331 (703)
Q Consensus 256 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-m~~~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd- 331 (703)
..... ...++.+.... .. -..|....| .-+...|-..|++++|++..++..+. .|+
T Consensus 168 ~~~~~---------------l~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~ 227 (517)
T PF12569_consen 168 EYVNS---------------LESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTL 227 (517)
T ss_pred HHHHh---------------hcccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCc
Confidence 11110 00000000000 00 011222234 44556677788888888888877775 454
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCCh----------hhH
Q 005305 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV----------ISW 401 (703)
Q Consensus 332 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~----------~~~ 401 (703)
...|..-...+-+.|++.+|...++.+...... |.++-+-.+..+.++|++++|.+++.....++. ..|
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~W 306 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMW 306 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHH
Confidence 445666667777888888888888888776533 677777778888888888888888777654431 123
Q ss_pred H--HHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 402 N--ALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 402 ~--~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
- ....+|.+.|++..|++-|....+
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2 235677888888888776655543
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.92 E-value=3.1e-07 Score=97.47 Aligned_cols=161 Identities=19% Similarity=0.238 Sum_probs=83.1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHh-----CC-CCcH-HHHHHHHHHHHhCCCHHHHHHHHhhcCC-------CC--
Q 005305 233 TFATMIRASAGLELISVGKQLHSCALKM-----GF-GDNV-FVSCALIDMYSKCGSIEDAQGVFDEMSE-------KT-- 296 (703)
Q Consensus 233 t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~m~~-------~~-- 296 (703)
|+..+...|...|+++.|.+++...++. |. .+.+ ...+.+..+|...+++++|..+|+++.. ++
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 5555666777777777777777766554 10 1222 2233455666667777776666665532 11
Q ss_pred --cccHHHHHHHHHHcCCcHHHHHHHHHHHH-----CCCC-CCHh-hHHHHHHHHhccCCHHHHHHHHHHHHHc---CCC
Q 005305 297 --TVGWNTIIAGYALHGYSEEALDLYYEMRD-----SGVK-MDHF-TFSMIIRICTRLASLEHAKQAHAGLVRH---GFG 364 (703)
Q Consensus 297 --~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~-pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~---g~~ 364 (703)
..+++.|...|.+.|++++|...+++..+ .|.. |... -++.+...|...+.++++..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 22455555666777777666665555432 1111 1111 2344444555566666666665554431 011
Q ss_pred Cc----hHHHHHHHhhHHhcCCHHHHHHHhhhc
Q 005305 365 LD----IVANSALVDFYSKWGRIEDARHVFDKM 393 (703)
Q Consensus 365 ~~----~~~~~~Li~~y~k~g~~~~A~~~f~~m 393 (703)
++ ..+++.|...|.+.|++++|+++|++.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 11 234455555555555555555555544
No 74
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=1.4e-06 Score=88.23 Aligned_cols=80 Identities=10% Similarity=-0.146 Sum_probs=59.8
Q ss_pred cccccCCCCcccchhhcccccCccCCCCC-cccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCC-hhhHHHHHHHHhc
Q 005305 66 LKPRPKPNKIYTEELKESSLPDTQMKKPS-AGICSQIEK-LVLNKRYREALELFEILEFEGGFDVG-SSTYDALISACIG 142 (703)
Q Consensus 66 i~~y~k~~~~~~aa~~~~~f~~~~~~~p~-~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~-~~t~~~ll~~~~~ 142 (703)
=+-|.+.+.+++| .+.+....+..|| .+-|...-+ |...|++++..+.=....+. .|+ .-.+..-.+++-.
T Consensus 122 GN~~f~~kkY~eA---IkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl---~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 122 GNKFFRNKKYDEA---IKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL---NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhcccHHHH---HHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc---CcHHHHHHHHHHHHHHh
Confidence 3456666999999 9999998888888 666777777 99999999999887777764 454 3345555566667
Q ss_pred cCChHHHHH
Q 005305 143 LRSIREVKR 151 (703)
Q Consensus 143 ~~~~~~a~~ 151 (703)
.|++.++..
T Consensus 196 lg~~~eal~ 204 (606)
T KOG0547|consen 196 LGKFDEALF 204 (606)
T ss_pred hccHHHHHH
Confidence 777776653
No 75
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=3.7e-06 Score=81.74 Aligned_cols=405 Identities=13% Similarity=0.065 Sum_probs=250.7
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChh
Q 005305 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYL 213 (703)
Q Consensus 137 l~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~ 213 (703)
+.-+....++..|..+++.-...+-+....+---+...|.+.|++++|..++..+.+ ++...|-.|.-.+.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 344556678888888888776544333333444455777889999999999886654 56667777777777788888
Q ss_pred HHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 005305 214 EAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293 (703)
Q Consensus 214 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 293 (703)
+|..+-....+ ++-.-..++...-+.++-.+-.++|..+...- .-.-+|.++.-..-.+.+|++++.++.
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877554321 33344455566667788888888887765432 233445555444556899999999987
Q ss_pred CC--CcccHHH-HHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHcCCCCchH
Q 005305 294 EK--TTVGWNT-IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR--LASLEHAKQAHAGLVRHGFGLDIV 368 (703)
Q Consensus 294 ~~--~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~ 368 (703)
.. +-...|. |.-+|.+..-++-+.+++.--.+. -||+ |+..=+.+|.. .=+-..+.+-...+.+.+-..-+
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~- 254 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP- 254 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-
Confidence 53 3444454 334677888888888888777664 4443 34444444432 22222233333333333211111
Q ss_pred HHHHHHhhHHhc-----CCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005305 369 ANSALVDFYSKW-----GRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443 (703)
Q Consensus 369 ~~~~Li~~y~k~-----g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 443 (703)
.+.-.++. ..-+.|.+++-.+.+.=+..--.++--|.++++..+|..+.+++.- ..|-......+..+-
T Consensus 255 ----f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aa 328 (557)
T KOG3785|consen 255 ----FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAA 328 (557)
T ss_pred ----hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHH
Confidence 11112221 2235677766555433333444466678899999999999877642 355555554444332
Q ss_pred H-----ccCCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcC
Q 005305 444 S-----RSGLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLLDEAFALIRGAPF--KTTKNMWAALLTACRVNG 515 (703)
Q Consensus 444 ~-----~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~a~~~~g 515 (703)
. ....+.-|.+.|+..-. .+..-| ...-.++...+.-.-++++.+-.++.+.. ..|...--.+..|....|
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~-Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atg 407 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGE-SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATG 407 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhc
Confidence 1 12245667777775543 333322 23344566666666788888888776542 223333345788999999
Q ss_pred ChhHHHHHHHHHhCCCCCCcchH-HHHHHHHHhCCChHHHHHHHHHHH
Q 005305 516 NLELGKFAAEKLYGMEPEKLSNY-VVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 516 ~~~~a~~~~~~~~~~~p~~~~~~-~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
++.+|++++-++.+.+-.|-..| ..|+.+|.+.|+.+-|++++-++.
T Consensus 408 ny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 408 NYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred ChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 99999999999887774444555 467899999999999998875543
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.85 E-value=1.6e-06 Score=88.23 Aligned_cols=231 Identities=13% Similarity=-0.002 Sum_probs=144.2
Q ss_pred CCcHHHHHHHHHHHHCC-CCCC--HhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHH
Q 005305 311 GYSEEALDLYYEMRDSG-VKMD--HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387 (703)
Q Consensus 311 g~~~~A~~l~~~m~~~g-~~pd--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 387 (703)
+..+.++.-+.++.... ..|+ ...|...-..+...|+.+.|...+..+++... .+..+++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 34555566665555431 1222 12344445556667777777777777776542 35677888888888888888888
Q ss_pred HHhhhcCc--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcC
Q 005305 388 HVFDKMLC--K-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464 (703)
Q Consensus 388 ~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 464 (703)
..|+...+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 88887743 3 4567777888888889999999999888874 55543222222234456778899888876544 2
Q ss_pred CCCchHHHHHHHHHHHhcCChHHH--HHHHHh-CCC----CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCC-CCc
Q 005305 465 IKPRAMHYACMIELLGREGLLDEA--FALIRG-APF----KT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEP-EKL 535 (703)
Q Consensus 465 ~~p~~~~~~~li~~~~~~g~~~~A--~~~~~~-m~~----~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p-~~~ 535 (703)
..|+... ..++.. ..|++.++ .+.+.+ ... .| ....|..+...+...|+.++|...++++++.+| +.+
T Consensus 195 ~~~~~~~-~~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 2333222 233333 34444333 333322 111 11 235788899999999999999999999999987 545
Q ss_pred chHHHHHHHHHhCC
Q 005305 536 SNYVVLLNIYNSSG 549 (703)
Q Consensus 536 ~~~~~l~~~y~~~g 549 (703)
.+-..++......+
T Consensus 272 e~~~~~~e~~~~~~ 285 (296)
T PRK11189 272 EHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555544433
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.84 E-value=4.9e-05 Score=80.12 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC
Q 005305 472 YACMIELLGREGLLDEAFALIRGA-PFKTTKN-MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549 (703)
Q Consensus 472 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 549 (703)
+-.++..|-+.|+++.|+..++.. .-.|+.+ .|.+-...+...|+++.|...++++.+++-.|...-.--+.-..++.
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn 453 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRAN 453 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHcc
Confidence 345667777888888888888764 3345543 34444466777888888888888888888665444335556667888
Q ss_pred ChHHHHHHHHHHHhCCC
Q 005305 550 KLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 550 ~~~~A~~~~~~m~~~~~ 566 (703)
+.++|.++.....+.|.
T Consensus 454 ~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 454 EIEEAEEVLSKFTREGF 470 (700)
T ss_pred ccHHHHHHHHHhhhccc
Confidence 88888888888776664
No 78
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=8.1e-06 Score=89.23 Aligned_cols=144 Identities=17% Similarity=0.188 Sum_probs=118.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHH
Q 005305 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476 (703)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 476 (703)
....|+.+..+-.+.|...+|++-|-+. -|...|.-++.++.+.|.+++-.+++....+ ..-+|..++ .||
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id~--eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYIDS--ELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccchH--HHH
Confidence 3457999999999999999998877542 2667899999999999999999999887766 566677665 899
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHH
Q 005305 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 556 (703)
-+|++.+++.|-++++. -||..-...+.+-|...|.++.|+-++.. .+.|.-|+..+...|.++.|..
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888874 47888888899999999999999888763 5678888888888898888876
Q ss_pred HHHHH
Q 005305 557 VIRTL 561 (703)
Q Consensus 557 ~~~~m 561 (703)
--++.
T Consensus 1242 ~aRKA 1246 (1666)
T KOG0985|consen 1242 AARKA 1246 (1666)
T ss_pred Hhhhc
Confidence 55443
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.80 E-value=3.3e-05 Score=81.29 Aligned_cols=428 Identities=13% Similarity=0.083 Sum_probs=252.5
Q ss_pred cccccCccCCCCCcccHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh
Q 005305 82 ESSLPDTQMKKPSAGICSQIEK--LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST 159 (703)
Q Consensus 82 ~~~f~~~~~~~p~~~~~~~li~--~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~ 159 (703)
.++.+.+..+.|...---+|.+ +...|+.++|.+..+...+.+ .-+.+.|..+--.+....++++|.+.+..+.+.
T Consensus 27 LK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~ 104 (700)
T KOG1156|consen 27 LKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI 104 (700)
T ss_pred HHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 3333333334444444445555 667788888888777766644 345566776666666777788888888888776
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcC-CCCChhhHH
Q 005305 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF-SDCGSRTFA 235 (703)
Q Consensus 160 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~ 235 (703)
+ +.|..++.-|.-.-+..|+++.....-.+..+ ..-..|..+..++--.|+...|..+.++..+.. -.|+...+.
T Consensus 105 ~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e 183 (700)
T KOG1156|consen 105 E-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYE 183 (700)
T ss_pred C-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHH
Confidence 5 44555665555555555666555444333332 345678888888888899999999988887654 245555444
Q ss_pred HHH------HHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC--CcccHHHHHH-H
Q 005305 236 TMI------RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK--TTVGWNTIIA-G 306 (703)
Q Consensus 236 ~ll------~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~li~-~ 306 (703)
-.. ......|.++.+.+.+...... +......--.-.+.+.+.+++++|..++..+..+ |...|+-... +
T Consensus 184 ~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 184 HSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHH
Confidence 322 2345567777776655443322 2222334445567788889999999999988764 4444544433 3
Q ss_pred HHHcCCcHHHH-HHHHHHHHC---CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCC
Q 005305 307 YALHGYSEEAL-DLYYEMRDS---GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382 (703)
Q Consensus 307 ~~~~g~~~~A~-~l~~~m~~~---g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 382 (703)
+.+--+.-+++ .+|....+. ...|-.... +......-.+....++...++.|+++ ++..+...|-.-..
T Consensus 263 lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlpl----svl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k 335 (700)
T KOG1156|consen 263 LGKIKDMLEALKALYAILSEKYPRHECPRRLPL----SVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEK 335 (700)
T ss_pred HHHHhhhHHHHHHHHHHHhhcCcccccchhccH----HHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhH
Confidence 32333334444 555555432 111111111 11111222344455566666677653 34444444433221
Q ss_pred HHHHH----HHhhhc--------------CcCChhhHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHH
Q 005305 383 IEDAR----HVFDKM--------------LCKNVISWNA--LIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLS 441 (703)
Q Consensus 383 ~~~A~----~~f~~m--------------~~~~~~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~ 441 (703)
.+--+ .+...+ ..|....|+. ++..|-..|+++.|+...+..+.. .|+. .-|..=..
T Consensus 336 ~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaR 413 (700)
T KOG1156|consen 336 VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKAR 413 (700)
T ss_pred hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHH
Confidence 11111 111111 1345556665 567788899999999999998874 7776 34444457
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CH--------HHHHHH--HHH
Q 005305 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT-TK--------NMWAAL--LTA 510 (703)
Q Consensus 442 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~--------~~~~~l--l~a 510 (703)
.+.+.|++++|..++++..+ --.||...-.-.+.-..|+.+.++|.++.....-.. +. -+|-.+ ..+
T Consensus 414 I~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~a 491 (700)
T KOG1156|consen 414 IFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEA 491 (700)
T ss_pred HHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHH
Confidence 78999999999999998866 234555544466677779999999998865532111 11 244333 245
Q ss_pred HHHcCChhHHHHHH
Q 005305 511 CRVNGNLELGKFAA 524 (703)
Q Consensus 511 ~~~~g~~~~a~~~~ 524 (703)
|.+.|++.+|..-+
T Consensus 492 y~r~~k~g~ALKkf 505 (700)
T KOG1156|consen 492 YLRQNKLGLALKKF 505 (700)
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777776543
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.78 E-value=5.5e-07 Score=82.83 Aligned_cols=162 Identities=14% Similarity=0.133 Sum_probs=136.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHH
Q 005305 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479 (703)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 479 (703)
...+.-+|.+.|+...|..-+++.++. .|+. .++..+...|.+.|..+.|.+.|+...+ --+.+-.+.|....-+
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FL 113 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHH
Confidence 444667889999999999999998884 6665 7888888889999999999999998876 2334567788888889
Q ss_pred HhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHH
Q 005305 480 GREGLLDEAFALIRGAPFKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555 (703)
Q Consensus 480 ~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 555 (703)
|..|++++|...|++.-..|+ ..+|..+.....+.|+.+.|+..+++.++.+|+.+.+...+.+...+.|++-+|.
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999998644443 3478887777789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC
Q 005305 556 EVIRTLRRKGL 566 (703)
Q Consensus 556 ~~~~~m~~~~~ 566 (703)
..++....++.
T Consensus 194 ~~~~~~~~~~~ 204 (250)
T COG3063 194 LYLERYQQRGG 204 (250)
T ss_pred HHHHHHHhccc
Confidence 99998876654
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=6.8e-05 Score=74.76 Aligned_cols=384 Identities=13% Similarity=0.022 Sum_probs=236.6
Q ss_pred chHHHHHHHHHhCCChHHHHHHHccCCCCCccc-HHHHHHHHHhCC-ChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhc
Q 005305 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVS-CNMIIAGMIDSG-DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243 (703)
Q Consensus 166 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~-~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 243 (703)
..--..+..|-..++-+.|.....+.+..-... -|.|+.-+-+.| +-.++.--+.+....-+ ..+ ..|.+..+
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp----~aL-~~i~~ll~ 172 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP----MAL-QVIEALLE 172 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc----hHH-HHHHHHHH
Confidence 344557788888899999999998888643333 344444333333 22233322333322210 000 01111111
Q ss_pred CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC--CCHHHHHHHHhhcC-----CCCcccHHHHHHHHHHcCCcHHH
Q 005305 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC--GSIEDAQGVFDEMS-----EKTTVGWNTIIAGYALHGYSEEA 316 (703)
Q Consensus 244 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~--g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A 316 (703)
.+ +..+++.-..|-+...++........+.+|+.+ ++...|...|--.. ..|+.....+...+...|+.++|
T Consensus 173 l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a 251 (564)
T KOG1174|consen 173 LG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQA 251 (564)
T ss_pred Hh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHH
Confidence 00 000111111122223344444444445555544 44444444443332 23666788889999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHH-HHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc
Q 005305 317 LDLYYEMRDSGVKMDHFTFSM-IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395 (703)
Q Consensus 317 ~~l~~~m~~~g~~pd~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 395 (703)
...|++.+.. .|+..+--- -.-.+...|+.+....+..++....- -...-|..-........+.+.|..+-++.++
T Consensus 252 ~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~ 328 (564)
T KOG1174|consen 252 EDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCID 328 (564)
T ss_pred HHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 9999987754 444332111 11123566777777777666654320 1111121122223345678888888777755
Q ss_pred CChhhHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHH
Q 005305 396 KNVISWNAL---IAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH 471 (703)
Q Consensus 396 ~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 471 (703)
-|.....++ ...+.+.|+.++|.-.|+..+. +.|.. ..|..++.+|.-.|...+|...-+...+ -++.+..+
T Consensus 329 ~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~ 404 (564)
T KOG1174|consen 329 SEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARS 404 (564)
T ss_pred cCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcchhh
Confidence 444333333 4577888999999999999887 56654 8999999999999999999888776665 34445555
Q ss_pred HHHHH-HHHH-hcCChHHHHHHHHh-CCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 005305 472 YACMI-ELLG-REGLLDEAFALIRG-APFKTTKN-MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547 (703)
Q Consensus 472 ~~~li-~~~~-~~g~~~~A~~~~~~-m~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 547 (703)
.+.+. +.+. ...--++|.+++++ +..+|+-. ..+.+...|...|..+.+..++++.+...|+ ...++.|++++..
T Consensus 405 LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A 483 (564)
T KOG1174|consen 405 LTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRA 483 (564)
T ss_pred hhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHH
Confidence 44442 2222 22334789999987 56788754 6677788899999999999999999999998 4789999999999
Q ss_pred CCChHHHHHHHHHHHh
Q 005305 548 SGKLKEAAEVIRTLRR 563 (703)
Q Consensus 548 ~g~~~~A~~~~~~m~~ 563 (703)
.+.+++|.+.+....+
T Consensus 484 ~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 484 QNEPQKAMEYYYKALR 499 (564)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 9999999999987764
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=3.4e-07 Score=87.94 Aligned_cols=216 Identities=14% Similarity=-0.002 Sum_probs=114.8
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHH
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 183 (703)
|.+.|.+.+|.+.|+..... .|-..||..|-++|-+..++..|..++...+.. ++.|+.........+-..++.++
T Consensus 233 ylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~ 308 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQED 308 (478)
T ss_pred HHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHH
Confidence 66666666666666665553 244555666666666666666666666655543 23344333444455555566666
Q ss_pred HHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 005305 184 ARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKM 260 (703)
Q Consensus 184 A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 260 (703)
|.++++...+ -|+.+...+..+|.-.++++-|+..|+++++.|+. +...|..+.-.|.-.++++.+..-|..+...
T Consensus 309 a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 309 ALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred HHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 6666655543 23444444555555566666666666666666554 4555555555555555555555555554443
Q ss_pred CCCCc--HHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC---cccHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005305 261 GFGDN--VFVSCALIDMYSKCGSIEDAQGVFDEMSEKT---TVGWNTIIAGYALHGYSEEALDLYYEMR 324 (703)
Q Consensus 261 g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~ 324 (703)
--.|+ ..+|-.|.......|++..|.+.|+-....| ..++|.|.-.-.+.|+.++|..++....
T Consensus 388 at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 388 ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 22222 2344444444445555555555555443322 2344444444455555555555555443
No 83
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.74 E-value=5.8e-05 Score=80.02 Aligned_cols=352 Identities=16% Similarity=0.150 Sum_probs=172.7
Q ss_pred HHHHHHHHhCCChHHHHHHHccC--CCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCC
Q 005305 169 NRVLLMHVRCGMMIDARRLFDEM--PERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246 (703)
Q Consensus 169 ~~Li~~y~~~g~~~~A~~~f~~m--~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 246 (703)
-+-|..|.+.|...+|.+.-..= ...|......+..++.+..-+++|-++|+.+.. +...+..+-+-..
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgda 689 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDA 689 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccH
Confidence 45678888998888877654321 123444444455555555556666666655532 1112222222222
Q ss_pred hHHHHHHHHHHHHhCCCCcHHH-HHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 005305 247 ISVGKQLHSCALKMGFGDNVFV-SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325 (703)
Q Consensus 247 ~~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 325 (703)
+-+|.++-+. .++..++. -.+...-+...|+++.|..-|-+... .--.|.+-.....+.+|+.+++.++.
T Consensus 690 f~kaielarf----afp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqd 760 (1636)
T KOG3616|consen 690 FGKAIELARF----AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQD 760 (1636)
T ss_pred HHHHHHHHHh----hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhh
Confidence 3333332221 12222111 11222333344555555444433211 11123333444555555555555544
Q ss_pred CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcC--ChhhHHH
Q 005305 326 SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK--NVISWNA 403 (703)
Q Consensus 326 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~--~~~~~~~ 403 (703)
.. .-..-|..+...|+..|+++.|+++|-.. ..++--|+||.+.|++++|.++-.+...| .+.+|-+
T Consensus 761 qk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yia 829 (1636)
T KOG3616|consen 761 QK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIA 829 (1636)
T ss_pred hc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHH
Confidence 32 12223444555555555555555554322 12334455555555555555555444322 2223333
Q ss_pred H--------------------------HHHHHhcCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCCHHHHHHH
Q 005305 404 L--------------------------IAGYGNHGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERGWEI 455 (703)
Q Consensus 404 l--------------------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 455 (703)
- |..|-++|..++.+++..+- .|+. .|-..+..-+-..|++..|..-
T Consensus 830 kaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 830 KAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred hHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHH
Confidence 3 33444444444444443332 2332 3445555566667777777766
Q ss_pred HHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC----CCCHHHHHHH------HHHHHHcCChhHHHHH--
Q 005305 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF----KTTKNMWAAL------LTACRVNGNLELGKFA-- 523 (703)
Q Consensus 456 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p~~~~~~~l------l~a~~~~g~~~~a~~~-- 523 (703)
|-+.. -|.+-+++|-..+.+++|.++-+.-+- +.-...|.-- .....++|-.+.|...
T Consensus 905 flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~ 974 (1636)
T KOG3616|consen 905 FLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAA 974 (1636)
T ss_pred HHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhh
Confidence 64432 356778899999999999988765331 1112344322 2223455655555432
Q ss_pred ----HHHHh-----CCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 524 ----AEKLY-----GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 524 ----~~~~~-----~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
|+-++ .....-+....-++.-+-..|++++|.+-+-+..+.
T Consensus 975 d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 975 DNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred cccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 11111 111222456777888888999999998777665543
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.69 E-value=0.00021 Score=76.91 Aligned_cols=428 Identities=15% Similarity=0.060 Sum_probs=266.0
Q ss_pred cHHHHHH--HHhcCChhHHHHHHHHH----HHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHH
Q 005305 97 ICSQIEK--LVLNKRYREALELFEIL----EFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170 (703)
Q Consensus 97 ~~~~li~--~~~~g~~~~A~~l~~~m----~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~ 170 (703)
..-.+|. ++-..+.+++.-..-.+ .... +.-|...|-.+.-+....|+++.+-+.|++....- -.....|+.
T Consensus 285 ~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~-~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~ 362 (799)
T KOG4162|consen 285 ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK-FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQ 362 (799)
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHH
Confidence 3444555 66666777776544333 3333 66788999999999999999999999999987643 334567888
Q ss_pred HHHHHHhCCChHHHHHHHccCCC----CCcccHHHHH-HHHHh-CCChhHHHHHHHHhHHc--C----CCCChhhHHHHH
Q 005305 171 VLLMHVRCGMMIDARRLFDEMPE----RNLVSCNMII-AGMID-SGDYLEAFLLFLDLWEE--F----SDCGSRTFATMI 238 (703)
Q Consensus 171 Li~~y~~~g~~~~A~~~f~~m~~----~d~~~~~~li-~~~~~-~g~~~~A~~~~~~m~~~--g----~~p~~~t~~~ll 238 (703)
+-..|..+|.-..|..+.++-.. |+..+--.|+ ..|.+ -+..++++++-.+.... + +.|- .|..+.
T Consensus 363 ~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lG 440 (799)
T KOG4162|consen 363 LALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLG 440 (799)
T ss_pred HHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHH
Confidence 99999999999999999886543 3323333333 23333 36777887777766551 1 2332 333333
Q ss_pred HHHhc----CCC-------hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC----CCCcccHHHH
Q 005305 239 RASAG----LEL-------ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS----EKTTVGWNTI 303 (703)
Q Consensus 239 ~a~~~----~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~l 303 (703)
-+|.. ... -.++.+.++.+++.+ +.|+.+..-+.--|+..++++.|.+...+.. ..+...|..+
T Consensus 441 i~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLL 519 (799)
T KOG4162|consen 441 IAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLL 519 (799)
T ss_pred HHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 33321 111 234566677777665 3444444445566788899999988877654 3477899999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHhccCCHHHHHHH-------HH----------HHHH----c
Q 005305 304 IAGYALHGYSEEALDLYYEMRDSGVKMD-HFTFSMIIRICTRLASLEHAKQA-------HA----------GLVR----H 361 (703)
Q Consensus 304 i~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~-------~~----------~~~~----~ 361 (703)
.-.+...+++.+|+.+.+...+. .|+ ..-...-+..-...++.+++... |+ +... .
T Consensus 520 ALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~ 597 (799)
T KOG4162|consen 520 ALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKA 597 (799)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhc
Confidence 99999999999999998876553 111 10000001111112222222111 11 1111 1
Q ss_pred CCC-------CchHHHHHHHhhHH---hcCCHHHHHHHhhhcCcCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005305 362 GFG-------LDIVANSALVDFYS---KWGRIEDARHVFDKMLCKN------VISWNALIAGYGNHGRGEEAVELFEQML 425 (703)
Q Consensus 362 g~~-------~~~~~~~~Li~~y~---k~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~ 425 (703)
|.. ..+.++..+..... +.-..+.....+...+.|+ ...|......+.+.++.++|...+.+..
T Consensus 598 ~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~ 677 (799)
T KOG4162|consen 598 GLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS 677 (799)
T ss_pred ccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 110 11222222222111 1111111112222223333 2346666778888999999988887776
Q ss_pred HcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCChHHHHH--HHHhC-CCCC-
Q 005305 426 LNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLLDEAFA--LIRGA-PFKT- 499 (703)
Q Consensus 426 ~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p- 499 (703)
. +.|-. ..|......+...|..++|.+.|..... +.|+ +....++..++.+.|+..-|.. +...+ ...|
T Consensus 678 ~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 678 K--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred h--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 5 34433 4444444566778899999999987754 4554 5678899999999998877777 66654 5555
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc
Q 005305 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536 (703)
Q Consensus 500 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 536 (703)
+...|-.|.....+.|+.+.|-..|...+++++.+|.
T Consensus 753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 5679999999999999999999999999999988764
No 85
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.67 E-value=5.6e-05 Score=73.50 Aligned_cols=195 Identities=13% Similarity=0.090 Sum_probs=102.1
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhc---CcCChhhHHHHHHHHHhcCCHHHHH
Q 005305 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM---LCKNVISWNALIAGYGNHGRGEEAV 418 (703)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m---~~~~~~~~~~li~~~~~~g~~~~A~ 418 (703)
+...|+...+......+++.. +.|...+..-..+|...|++..|..-+... ...|....--+-..+-.-|+.+.++
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHH
Confidence 344556666666666665532 235566666666777777777776555443 3344555555555666677777777
Q ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CC
Q 005305 419 ELFEQMLLNGMRPNHVT-FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-AP 496 (703)
Q Consensus 419 ~l~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~ 496 (703)
...++-++ +.||... |.. | ..+.+..+.++.|.+ ..+.+++.++++-.+. |.
T Consensus 244 ~~iRECLK--ldpdHK~Cf~~----Y---KklkKv~K~les~e~-----------------~ie~~~~t~cle~ge~vlk 297 (504)
T KOG0624|consen 244 KEIRECLK--LDPDHKLCFPF----Y---KKLKKVVKSLESAEQ-----------------AIEEKHWTECLEAGEKVLK 297 (504)
T ss_pred HHHHHHHc--cCcchhhHHHH----H---HHHHHHHHHHHHHHH-----------------HHhhhhHHHHHHHHHHHHh
Confidence 77766665 4666632 211 0 112222222233322 1122333333333322 22
Q ss_pred CCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 497 FKTTK-----NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 497 ~~p~~-----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
..|.. ..+..+-..++..|++.+|++...+++.++|+|..++.--+.+|.-...+|+|..-++...+
T Consensus 298 ~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 298 NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 22321 12233334445566666666666666666666666666666666666666666666665553
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.64 E-value=5.5e-05 Score=79.57 Aligned_cols=195 Identities=13% Similarity=0.008 Sum_probs=92.9
Q ss_pred HHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcCH--HHHHHHHHHHH
Q 005305 371 SALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM-RPNH--VTFLAVLSACS 444 (703)
Q Consensus 371 ~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~a~~ 444 (703)
..+...+...|++++|...+++... .+...+..+...|...|++++|+.++++...... .|+. ..+..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 3344455556666666666555532 2334445555555566666666666655554211 1121 12333444555
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCchHHH-H--HHHHHHHhcCChHHHHHH---HHh---C-CCCCCHHHHHHHHHHHHHc
Q 005305 445 RSGLSERGWEIFQSMSRDHKIKPRAMHY-A--CMIELLGREGLLDEAFAL---IRG---A-PFKTTKNMWAALLTACRVN 514 (703)
Q Consensus 445 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~---m-~~~p~~~~~~~ll~a~~~~ 514 (703)
..|+.++|..+++.........+..... + .+..-+...|..+.+.+. ... . +.............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 5666666666665553211111111110 1 112222222322222111 111 0 1000111222344455566
Q ss_pred CChhHHHHHHHHHhCCC---------CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 515 GNLELGKFAAEKLYGME---------PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 515 g~~~~a~~~~~~~~~~~---------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
|+.+.|....+.+.... +.......+.+.++...|++++|.+.+.......
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 66777766665554211 1124556677888899999999999998877544
No 87
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=0.0002 Score=78.87 Aligned_cols=445 Identities=13% Similarity=0.095 Sum_probs=247.9
Q ss_pred hhhhhhhccccccCCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHc----CCCCCChhh
Q 005305 58 ECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFE----GGFDVGSST 132 (703)
Q Consensus 58 ~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~----~~~~p~~~t 132 (703)
+..++|+|...|...++-.+- .+.+ |..-=+..++ |+..+++.-|.-.|++-... . +.-....
T Consensus 871 d~a~hnAlaKIyIDSNNnPE~-----fLke------N~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~-vcNeNSl 938 (1666)
T KOG0985|consen 871 DPATHNALAKIYIDSNNNPER-----FLKE------NPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELIN-VCNENSL 938 (1666)
T ss_pred chHHHhhhhheeecCCCChHH-----hccc------CCcchhhHHhhhhcccCCceEEEeecccCCcHHHHH-hcCchhH
Confidence 778899999999886654433 2222 2222233455 77777766555444332100 0 1111122
Q ss_pred HHHHHHHHhccCChH-----------HHHHHHHHHHHhCCC--CCcchHHHHHHHHHhCCChHHHHHHHccCC-CCCccc
Q 005305 133 YDALISACIGLRSIR-----------EVKRVFSYMLSTGFE--PDLYMRNRVLLMHVRCGMMIDARRLFDEMP-ERNLVS 198 (703)
Q Consensus 133 ~~~ll~~~~~~~~~~-----------~a~~l~~~~~~~g~~--~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~-~~d~~~ 198 (703)
|....+......+.+ --+++.++.+..+++ .|+.-.+.-+.++...+-..+-.++++++. ++++.+
T Consensus 939 fK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fs 1018 (1666)
T KOG0985|consen 939 FKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS 1018 (1666)
T ss_pred HHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccc
Confidence 333333333222221 235667777766653 345555666777777788888888887764 233332
Q ss_pred -----HHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 005305 199 -----CNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273 (703)
Q Consensus 199 -----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 273 (703)
-|.||-.-.+ .+.....+..+++-. +.-..+...+...+-+++|..+|... ..+....+.|+
T Consensus 1019 e~~nLQnLLiLtAik-ad~trVm~YI~rLdn-------yDa~~ia~iai~~~LyEEAF~ifkkf-----~~n~~A~~VLi 1085 (1666)
T KOG0985|consen 1019 ENRNLQNLLILTAIK-ADRTRVMEYINRLDN-------YDAPDIAEIAIENQLYEEAFAIFKKF-----DMNVSAIQVLI 1085 (1666)
T ss_pred cchhhhhhHHHHHhh-cChHHHHHHHHHhcc-------CCchhHHHHHhhhhHHHHHHHHHHHh-----cccHHHHHHHH
Confidence 3333333222 344555566555522 22223344455566677777777543 44555556666
Q ss_pred HHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 005305 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353 (703)
Q Consensus 274 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 353 (703)
+- -+.++.|.++-++..+| ..|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.++.-..
T Consensus 1086 e~---i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~ 1154 (1666)
T KOG0985|consen 1086 EN---IGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVK 1154 (1666)
T ss_pred HH---hhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHH
Confidence 53 46788888888877765 57999999999999999998877542 367789999999999999999998
Q ss_pred HHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChh--------------------------hHHHHHHH
Q 005305 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI--------------------------SWNALIAG 407 (703)
Q Consensus 354 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~--------------------------~~~~li~~ 407 (703)
.+..+.+..-+| .+-+.||-+|+|.+++.+-+++.. .||+. -|..|...
T Consensus 1155 yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~T 1229 (1666)
T KOG0985|consen 1155 YLLMARKKVREP--YIDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLAST 1229 (1666)
T ss_pred HHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHH
Confidence 888887765554 456789999999999888776643 23333 34444444
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHH
Q 005305 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487 (703)
Q Consensus 408 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 487 (703)
+...|++..|.+.-++. .+..||.-+-.+|...+.+..|. |.- ..+.-..+-..-++.-|...|.++|
T Consensus 1230 LV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeE 1297 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEE 1297 (1666)
T ss_pred HHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHH
Confidence 44455554444433321 13345555555555544433221 211 1222233444556666666666666
Q ss_pred HHHHHHh-CCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 488 AFALIRG-APFK-TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 488 A~~~~~~-m~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
-..+++. ++.+ .....|+-|.-.|.+.. .++-.+.++-... ....--++.+.-++..|.|..=++.+-
T Consensus 1298 lIsl~Ea~LGLERAHMgmfTELaiLYskyk-p~km~EHl~LFws-----RvNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1298 LISLLEAGLGLERAHMGMFTELAILYSKYK-PEKMMEHLKLFWS-----RVNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHhhhchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666654 3332 23334444444444432 2222222222211 011123455566666666665555443
No 88
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=2.3e-06 Score=88.85 Aligned_cols=218 Identities=17% Similarity=0.091 Sum_probs=167.1
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHH
Q 005305 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVE 419 (703)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 419 (703)
.+.|++..|.-.|+..++..+ .+...|--|.......++=..|+..+.+..+ .|....-+|...|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 456778888888888877653 3677888888888888887788887777643 355666677778888888888998
Q ss_pred HHHHHHHcCCC--------cCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 005305 420 LFEQMLLNGMR--------PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491 (703)
Q Consensus 420 l~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 491 (703)
.++.-+....+ ++..+-.. ....+...+....++|-.+....+..+|++++.+|.-+|--.|.+++|.+-
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88877653211 01000000 122223344556677777766677678889999999999999999999999
Q ss_pred HHh-CCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 492 IRG-APFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 492 ~~~-m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
|+. +..+| |...|+-|....+...+.++|..++.+++++.|.-+.+...|+-.|...|.++||.+.+-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 997 56677 5669999999999999999999999999999999999999999999999999999998876553
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.61 E-value=4.4e-05 Score=82.30 Aligned_cols=88 Identities=18% Similarity=0.125 Sum_probs=38.8
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCc--CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCH
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLC--KN-VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 449 (703)
|...|-..|+.++|.+..++.+. |+ +..|..-...|-+.|++.+|.+.++..+..... |...=+-....+.+.|++
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCH
Confidence 34444445555555555554432 21 223333444445555555555555554442211 223333333444455555
Q ss_pred HHHHHHHHHhHh
Q 005305 450 ERGWEIFQSMSR 461 (703)
Q Consensus 450 ~~a~~~~~~m~~ 461 (703)
++|.+++....+
T Consensus 279 e~A~~~~~~Ftr 290 (517)
T PF12569_consen 279 EEAEKTASLFTR 290 (517)
T ss_pred HHHHHHHHhhcC
Confidence 555555444433
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.59 E-value=2e-05 Score=72.82 Aligned_cols=190 Identities=16% Similarity=0.066 Sum_probs=95.2
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHH
Q 005305 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAV 418 (703)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~ 418 (703)
|...|+...|+.-++.+++... .+..++..+...|.+.|..+.|.+-|+... ..+-...|....-+|.+|++++|.
T Consensus 45 YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~ 123 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAM 123 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHH
Confidence 3444444444444444444321 133444455555555555555555555442 223334455555555566666666
Q ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC--
Q 005305 419 ELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-- 495 (703)
Q Consensus 419 ~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-- 495 (703)
..|++....-.-|.. .||..+.-+..+.|+.+.|..+|++..+ -.+........+.+.....|++-.|..+++..
T Consensus 124 q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~ 201 (250)
T COG3063 124 QQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQQ 201 (250)
T ss_pred HHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHh
Confidence 666665543222221 4555555555556666666666665554 11222334445555555666666666555543
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC
Q 005305 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534 (703)
Q Consensus 496 ~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 534 (703)
...++..+....+..-...||.+.+-+.-.++....|.+
T Consensus 202 ~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 202 RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 122444444444555556666666666555555555653
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.56 E-value=0.00017 Score=75.81 Aligned_cols=150 Identities=10% Similarity=-0.015 Sum_probs=74.9
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCcHHHHH---HHHHHHHhCCCHHHHHHHHhhcCCCCcc---cHHHHHHHHHHcCCcHH
Q 005305 242 AGLELISVGKQLHSCALKMGFGDNVFVSC---ALIDMYSKCGSIEDAQGVFDEMSEKTTV---GWNTIIAGYALHGYSEE 315 (703)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~Li~~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~ 315 (703)
...|+++.+..++..+++.. +.|...+. .+.......+..+.+.+.++.....+.. .+..+...+...|++++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 44566666666666655543 33333333 1111122234444555555442222222 22233345666677777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-Cch--HHHHHHHhhHHhcCCHHHHHHHhhh
Q 005305 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG-LDI--VANSALVDFYSKWGRIEDARHVFDK 392 (703)
Q Consensus 316 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~--~~~~~Li~~y~k~g~~~~A~~~f~~ 392 (703)
|...+++..+.. +.+...+..+...+...|++++|...+....+.... ++. ..+..+...|...|+.++|..+|++
T Consensus 133 A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 133 AEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777766642 223344455555556666666666666665553221 111 2233455566666666666666666
Q ss_pred c
Q 005305 393 M 393 (703)
Q Consensus 393 m 393 (703)
.
T Consensus 212 ~ 212 (355)
T cd05804 212 H 212 (355)
T ss_pred H
Confidence 5
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.54 E-value=9.7e-05 Score=81.37 Aligned_cols=174 Identities=17% Similarity=0.116 Sum_probs=114.5
Q ss_pred HHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 005305 384 EDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460 (703)
Q Consensus 384 ~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 460 (703)
..|...+...+ ..+...||+|.-. ...|.+.-|.-.|-+-... .+.+..+|..+.-.|....+++.|.+.|....
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 35555555542 3566778776554 5556666666666554443 12245777777777888889999999998775
Q ss_pred hhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHh-----C--CCCCCHHHHHHHHHHHHHcCChhHHHH----------
Q 005305 461 RDHKIKP-RAMHYACMIELLGREGLLDEAFALIRG-----A--PFKTTKNMWAALLTACRVNGNLELGKF---------- 522 (703)
Q Consensus 461 ~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~-----m--~~~p~~~~~~~ll~a~~~~g~~~~a~~---------- 522 (703)
. +.| +..-|-...-.....|+.-++..+|.- + +.-|+..-|.....-..++|+.++-..
T Consensus 878 S---LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 878 S---LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred h---cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 4 344 344444444444567888888888754 1 123555566655555566776655433
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 523 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
+.++.++-.|++..+|.+.+...-+.+.+.+|.++..+..
T Consensus 955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4566678889999999999999999999988888776653
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.53 E-value=2.1e-06 Score=86.10 Aligned_cols=244 Identities=13% Similarity=0.088 Sum_probs=119.0
Q ss_pred hCCCHHHHHHHHhhcCCC----CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 005305 278 KCGSIEDAQGVFDEMSEK----TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353 (703)
Q Consensus 278 ~~g~~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 353 (703)
-.|++..+..-.+ .... +.....-+.++|...|+++.++. +..... .|.......+...+....+-+.+..
T Consensus 13 y~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 13 YLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp CTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHHHH
Confidence 3566666665444 2111 12234445566666776655432 222222 4444444333333333233333322
Q ss_pred HHHHHHHcCCC-CchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC
Q 005305 354 AHAGLVRHGFG-LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432 (703)
Q Consensus 354 ~~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 432 (703)
-+...+..... .+..+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+. ..|
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 22222211111 22223333334455556666666665543 33333444455555555555555555555432 222
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 005305 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF--KTTKNMWAALLTA 510 (703)
Q Consensus 433 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~a 510 (703)
.+...+..+ .+..+.-.+.+.+|.-+|+++.. .+++.+.+.+..+
T Consensus 164 -~~l~qLa~a--------------------------------wv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 164 -SILTQLAEA--------------------------------WVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVC 210 (290)
T ss_dssp -HHHHHHHHH--------------------------------HHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHH
T ss_pred -HHHHHHHHH--------------------------------HHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 222222222 12222222356666666666422 3456666677777
Q ss_pred HHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCh-HHHHHHHHHHHh
Q 005305 511 CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL-KEAAEVIRTLRR 563 (703)
Q Consensus 511 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~-~~A~~~~~~m~~ 563 (703)
....|++++|+..++++++.+|+++.+...++-+....|+. +.+.+.+.+++.
T Consensus 211 ~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 211 HLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 77777777777777788888888888888888888888887 567777777664
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.51 E-value=1.6e-05 Score=79.74 Aligned_cols=245 Identities=13% Similarity=0.021 Sum_probs=144.1
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHc-CCcHHHH
Q 005305 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH-GYSEEAL 317 (703)
Q Consensus 239 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~ 317 (703)
+-..-.|++..+..-.. .....-+.+.....-+.++|...|+.+.+..-...-..|.......+. .|... ++-+.++
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la-~y~~~~~~~e~~l 86 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLA-EYLSSPSDKESAL 86 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHH-HHHCTSTTHHCHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHH-HHHhCccchHHHH
Confidence 34455688877775444 222221223445566778888899988766555444445555554443 34433 3445555
Q ss_pred HHHHHHHHCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcC
Q 005305 318 DLYYEMRDSGVKM-DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCK 396 (703)
Q Consensus 318 ~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~ 396 (703)
.-+++.......+ +..........+...|+++.|.+++... .+.......+..|.+.++++.|.+.++.|.+-
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5554443333332 3332233334456789999988776532 35667777899999999999999999999643
Q ss_pred --ChhhHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchH
Q 005305 397 --NVISWNALIAGYG----NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM 470 (703)
Q Consensus 397 --~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 470 (703)
|.. -..+..++. -...+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++..... .-+-++.
T Consensus 161 ~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~--~~~~~~d 236 (290)
T PF04733_consen 161 DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE--KDPNDPD 236 (290)
T ss_dssp SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC--C-CCHHH
T ss_pred CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCCHH
Confidence 322 222333322 233588999999997654 567778888888888888888888888877654 2233455
Q ss_pred HHHHHHHHHHhcCCh-HHHHHHHHhC
Q 005305 471 HYACMIELLGREGLL-DEAFALIRGA 495 (703)
Q Consensus 471 ~~~~li~~~~~~g~~-~~A~~~~~~m 495 (703)
+...++-.....|+. +.+.+++.++
T Consensus 237 ~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 237 TLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 555566666666666 4455566655
No 95
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=6.6e-05 Score=77.61 Aligned_cols=217 Identities=13% Similarity=0.098 Sum_probs=139.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChh----------hHHHH
Q 005305 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVI----------SWNAL 404 (703)
Q Consensus 335 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~----------~~~~l 404 (703)
...+.++.-+..+++.+.+-+...+... .++.-++.....|...|....+...-+...+..-. +...+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3445556666667777777777777654 46666677777788877777776665554332211 12223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchH-HHHHHHHHHHhcC
Q 005305 405 IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAM-HYACMIELLGREG 483 (703)
Q Consensus 405 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g 483 (703)
..+|.+.++++.|+..|.+.......||..+ +....+++....+... -+.|... -...-..-+.+.|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhcc
Confidence 3466667788888888888776555554321 2222333333333221 2333321 1112245566788
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 484 LLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 484 ~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
++.+|.+.+.++ ...| |...|.....+|.+.|++..|..-.+..++++|+.+..|.-=+-++....+|++|.+.+++.
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888774 2344 56677887788888888888888888888888888888887777788888888888888877
Q ss_pred HhCC
Q 005305 562 RRKG 565 (703)
Q Consensus 562 ~~~~ 565 (703)
.+.+
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 6544
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.49 E-value=8.8e-05 Score=78.71 Aligned_cols=195 Identities=16% Similarity=0.247 Sum_probs=131.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHH
Q 005305 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAV 418 (703)
Q Consensus 339 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 418 (703)
+.+......+..|..+++.+...... ..-|.-+.+-|+..|+++.|+++|.+. ..++--|..|.+.|++++|.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc-----chhHHHHHHHhccccHHHHH
Confidence 34445566777788887777664322 234566778888888888888888764 23455677888888888888
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 005305 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK 498 (703)
Q Consensus 419 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 498 (703)
++-.+.. |.......|.+-..-.-..|.+.+|.+++-.+. .|+. .|.+|-+.|..++.+++.++-.-.
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 8766543 333334555555555667788888877764332 2543 467888888888888888765311
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 499 TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 499 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
--..|-..+..-+-..|+...|+.-+-++ .-|-.-+++|..++.|++|.++-+.
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 11234555566667778888887766543 4477788999999999999887654
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.49 E-value=0.00016 Score=86.39 Aligned_cols=324 Identities=11% Similarity=-0.002 Sum_probs=200.7
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC----CC---c---c--cHHHHHHHHHH
Q 005305 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE----KT---T---V--GWNTIIAGYAL 309 (703)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~---~---~--~~~~li~~~~~ 309 (703)
...|+++........+.......++.........+...|++++|...+..... .+ . . ....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34466665555554431111112223334445556678999998888875421 11 1 1 11122334567
Q ss_pred cCCcHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC-CchHHHHHHHhhHHhc
Q 005305 310 HGYSEEALDLYYEMRDSGVKMDH----FTFSMIIRICTRLASLEHAKQAHAGLVRH----GFG-LDIVANSALVDFYSKW 380 (703)
Q Consensus 310 ~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~Li~~y~k~ 380 (703)
.|++++|...+++..+.-...+. .....+...+...|+++.|...+...... |.. ....+...+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999987763111222 22344445567789999999998887652 211 1223456667788889
Q ss_pred CCHHHHHHHhhhcCc-------CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCcC--HHHHHHHHHHHHc
Q 005305 381 GRIEDARHVFDKMLC-------KN----VISWNALIAGYGNHGRGEEAVELFEQMLLN--GMRPN--HVTFLAVLSACSR 445 (703)
Q Consensus 381 g~~~~A~~~f~~m~~-------~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~ll~a~~~ 445 (703)
|+++.|...+++... ++ ...+..+...+...|++++|...+++.... ...|. ..++..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999998877521 11 123444555667789999999999887652 11222 2344445567778
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCchHHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CCH----HHHHHHHHHHHHc
Q 005305 446 SGLSERGWEIFQSMSRDHKIKPRAMHY-----ACMIELLGREGLLDEAFALIRGAPFK--TTK----NMWAALLTACRVN 514 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~a~~~~ 514 (703)
.|+.++|.+.++..............+ ......+...|+.+.|.+.+...... ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999988875421111111111 11224445689999999998764321 111 1234566677888
Q ss_pred CChhHHHHHHHHHhCCC------CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 515 GNLELGKFAAEKLYGME------PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 515 g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
|+.++|...++++.... +....++..++.+|.+.|+.++|.+.+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999988876432 2223467788999999999999999999987644
No 98
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=0.0026 Score=66.78 Aligned_cols=409 Identities=12% Similarity=0.048 Sum_probs=240.1
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHH--HHHHHH--hCCC
Q 005305 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNM--IIAGMI--DSGD 211 (703)
Q Consensus 136 ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~--li~~~~--~~g~ 211 (703)
=++-+...+++++|.+....++..+ +.|...+..=+-+....+.+++|+++.+.-.... +++. +=.+|+ +.+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~--~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL--VINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh--hcchhhHHHHHHHHHccc
Confidence 3445667889999999999999876 5566666666777788899999997776544311 2222 234444 6789
Q ss_pred hhHHHHHHHHhHHcCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHhCCCHHHHHHHH
Q 005305 212 YLEAFLLFLDLWEEFSDCGS-RTFATMIRASAGLELISVGKQLHSCALKMGFG-DNVFVSCALIDMYSKCGSIEDAQGVF 289 (703)
Q Consensus 212 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~y~~~g~~~~A~~~f 289 (703)
.++|+..+. |..++. .+...=...|-+.++++++..++..+.+.+.+ .|......++.+-.. -.+. +.
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~-~~ 164 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ-LL 164 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH-HH
Confidence 999999987 334333 35555567788999999999999999998742 233333333332211 1121 34
Q ss_pred hhcCCCCcccHHHH---HHHHHHcCCcHHHHHHHHHHHHCC-------CCCCH------hh-HHHHHHHHhccCCHHHHH
Q 005305 290 DEMSEKTTVGWNTI---IAGYALHGYSEEALDLYYEMRDSG-------VKMDH------FT-FSMIIRICTRLASLEHAK 352 (703)
Q Consensus 290 ~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g-------~~pd~------~t-~~~ll~a~~~~~~~~~a~ 352 (703)
+..+.....+|..+ ...+...|++.+|++++....+.+ -.-+. .+ -.-+.-++-..|+-+++.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 45544333344443 335678999999999999873211 11111 11 112333456789999999
Q ss_pred HHHHHHHHcCCCCch---HHHHHHHhhHHhcCCHH-HHHHHhhhcCcCCh--------------hhHHH-HHHHHHhcCC
Q 005305 353 QAHAGLVRHGFGLDI---VANSALVDFYSKWGRIE-DARHVFDKMLCKNV--------------ISWNA-LIAGYGNHGR 413 (703)
Q Consensus 353 ~~~~~~~~~g~~~~~---~~~~~Li~~y~k~g~~~-~A~~~f~~m~~~~~--------------~~~~~-li~~~~~~g~ 413 (703)
+++..+++......+ ...|.|+.+-.-..-.+ .+...|+....... +..|. ++..|. +.
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk 322 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NK 322 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh
Confidence 999999997654221 23344443322221111 23333333322221 12222 222222 22
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHcc--CCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCChHHHHH
Q 005305 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS--GLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLLDEAFA 490 (703)
Q Consensus 414 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~--g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 490 (703)
.+.+.++-.... +..|. ..+..++..+.+. ....++..++....+ +.+-. ..+.-.++......|+++.|.+
T Consensus 323 ~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 323 MDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred HHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 233333332221 22333 4455555554432 245667777766654 22222 4455567778889999999999
Q ss_pred HHH--------hCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhC----CCCCC---cchHHHHHHHHHhCCChHHH
Q 005305 491 LIR--------GAP-FKTTKNMWAALLTACRVNGNLELGKFAAEKLYG----MEPEK---LSNYVVLLNIYNSSGKLKEA 554 (703)
Q Consensus 491 ~~~--------~m~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~p~~---~~~~~~l~~~y~~~g~~~~A 554 (703)
++. .++ +.-.+.+..++...+.+.++.+-|..++.++++ ..+.. ...+-.++..-.+.|+-++|
T Consensus 398 il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 988 332 222344556677777777777777777766652 22221 23344555556678999999
Q ss_pred HHHHHHHHhC
Q 005305 555 AEVIRTLRRK 564 (703)
Q Consensus 555 ~~~~~~m~~~ 564 (703)
..+++++.+.
T Consensus 478 ~s~leel~k~ 487 (652)
T KOG2376|consen 478 SSLLEELVKF 487 (652)
T ss_pred HHHHHHHHHh
Confidence 9999999863
No 99
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=1.8e-07 Score=59.92 Aligned_cols=33 Identities=36% Similarity=0.503 Sum_probs=26.1
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHccCC
Q 005305 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP 192 (703)
Q Consensus 160 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 192 (703)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.45 E-value=0.00075 Score=80.65 Aligned_cols=327 Identities=11% Similarity=-0.014 Sum_probs=203.9
Q ss_pred HHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC------CCc--HHHHHHHHHHHH
Q 005305 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF------GDN--VFVSCALIDMYS 277 (703)
Q Consensus 206 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~------~~~--~~~~~~Li~~y~ 277 (703)
....|++..+...+..+.......+..........+...|+++++...+..+.+.-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 345677777767666653221111222223334445677899999988887755311 111 122233445667
Q ss_pred hCCCHHHHHHHHhhcCC----CCc----ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCC---CCC--HhhHHHHHHHHhc
Q 005305 278 KCGSIEDAQGVFDEMSE----KTT----VGWNTIIAGYALHGYSEEALDLYYEMRDSGV---KMD--HFTFSMIIRICTR 344 (703)
Q Consensus 278 ~~g~~~~A~~~f~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~t~~~ll~a~~~ 344 (703)
..|++++|...+++... .+. ..++.+...+...|++++|...+.+.....- .+. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 89999999998887543 221 2345566677889999999999988764211 111 2234455566788
Q ss_pred cCCHHHHHHHHHHHHHc----CCC--C-chHHHHHHHhhHHhcCCHHHHHHHhhhcCc------C--ChhhHHHHHHHHH
Q 005305 345 LASLEHAKQAHAGLVRH----GFG--L-DIVANSALVDFYSKWGRIEDARHVFDKMLC------K--NVISWNALIAGYG 409 (703)
Q Consensus 345 ~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~------~--~~~~~~~li~~~~ 409 (703)
.|+++.|...+...... +.. + ....+..+...+...|++++|...+++... + ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998887652 221 1 223455566777788999999988887621 1 1234444566788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCc-CHHHH-----HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc---hHHHHHHHHHHH
Q 005305 410 NHGRGEEAVELFEQMLLNGMRP-NHVTF-----LAVLSACSRSGLSERGWEIFQSMSRDHKIKPR---AMHYACMIELLG 480 (703)
Q Consensus 410 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~-----~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~ 480 (703)
..|+.++|...+.+.....-.. ....+ ...+..+...|+.+.+.+.+...... ..... ...+..+..++.
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHH
Confidence 8999999999998886521111 11111 11123445578999999987765431 11111 111345667788
Q ss_pred hcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 481 REGLLDEAFALIRGA-------PFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 481 ~~g~~~~A~~~~~~m-------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
..|+.++|...+++. +..++ ..+...+..++...|+.++|...+.+++++...
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 999999998888764 11222 235566677888999999999999999876644
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.44 E-value=1.9e-05 Score=89.48 Aligned_cols=198 Identities=16% Similarity=0.181 Sum_probs=167.0
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCcC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLCK--------NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFL 437 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 437 (703)
+...|-..|......+++++|++++++.... -...|.++++.-...|.-+...++|++..+. .--...|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 4567777788888899999999999887321 2347999999888889888999999999873 22236788
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCC---CHHHHHHHHHHHHH
Q 005305 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKT---TKNMWAALLTACRV 513 (703)
Q Consensus 438 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p---~~~~~~~ll~a~~~ 513 (703)
.|+..|.+.+..++|-++++.|.+.++ .....|..+++.+.+..+-++|..++.+ |..-| ......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999666 6677899999999999999999999887 33333 34455666677789
Q ss_pred cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 005305 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567 (703)
Q Consensus 514 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 567 (703)
+|+.++|+.+|+.++.-.|.-...|..++++-.+.|..+.++.+|++....++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999998999999999999999999999999999987764
No 102
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=0.0014 Score=70.93 Aligned_cols=139 Identities=10% Similarity=-0.006 Sum_probs=81.9
Q ss_pred cccccCCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCC--------CCChhhHHHH
Q 005305 66 LKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGF--------DVGSSTYDAL 136 (703)
Q Consensus 66 i~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~--------~p~~~t~~~l 136 (703)
.+.|.--|+++.| .+-..-+. .-+.|..|.+ +++.++.+-|.-.+..|....+. .|+ .+=..+
T Consensus 735 FSfyvtiG~MD~A---fksI~~Ik----S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakv 806 (1416)
T KOG3617|consen 735 FSFYVTIGSMDAA---FKSIQFIK----SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKV 806 (1416)
T ss_pred eeEEEEeccHHHH---HHHHHHHh----hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHH
Confidence 3467777888888 54444443 3456999988 88888887777666665431111 122 222223
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCC-CcccHHHHHHHHHhCCChhHH
Q 005305 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER-NLVSCNMIIAGMIDSGDYLEA 215 (703)
Q Consensus 137 l~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~~~~A 215 (703)
.-.....|.+++|+.++.+-.+. ..|=..|-..|.+++|.++-+.-..- =-.||.....-+-..++.+.|
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHH
Confidence 33345678888888888887753 33446677778888888776543221 112344444444445666666
Q ss_pred HHHHHH
Q 005305 216 FLLFLD 221 (703)
Q Consensus 216 ~~~~~~ 221 (703)
++.|+.
T Consensus 878 leyyEK 883 (1416)
T KOG3617|consen 878 LEYYEK 883 (1416)
T ss_pred HHHHHh
Confidence 666653
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=5.1e-05 Score=72.34 Aligned_cols=298 Identities=13% Similarity=0.065 Sum_probs=157.3
Q ss_pred CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC----CCcccHHHHHHHHHHcCCcHHHHHH
Q 005305 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE----KTTVGWNTIIAGYALHGYSEEALDL 319 (703)
Q Consensus 244 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l 319 (703)
.+++..++.+.++... +.+..+.+...-...+.|+++.|.+-|+...+ .....||..+.. .+.|+++.|++.
T Consensus 125 e~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~ 200 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKH 200 (459)
T ss_pred cccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHH
Confidence 3455555555444332 12334444555556678888888888887654 245567765554 457888899998
Q ss_pred HHHHHHCCCCCCHhh----HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc
Q 005305 320 YYEMRDSGVKMDHFT----FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395 (703)
Q Consensus 320 ~~~m~~~g~~pd~~t----~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 395 (703)
..+..+.|++--+.. -.-.+++ ...|+ -..+|... -+..+|.-...+.+.|+.+.|.+.+-.|+.
T Consensus 201 iSEIieRG~r~HPElgIGm~tegiDv-rsvgN---t~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPP 269 (459)
T KOG4340|consen 201 ISEIIERGIRQHPELGIGMTTEGIDV-RSVGN---TLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPP 269 (459)
T ss_pred HHHHHHhhhhcCCccCccceeccCch-hcccc---hHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCC
Confidence 888888876532210 0000000 00011 11111111 122344445567789999999999999975
Q ss_pred C-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCC-Cch
Q 005305 396 K-----NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK-PRA 469 (703)
Q Consensus 396 ~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~ 469 (703)
+ |++|...+.-.- ..+++.+..+-+.-+.+...- -..||..++-.|++..-++.|-.++.+-.. .... .+.
T Consensus 270 RaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~ 346 (459)
T KOG4340|consen 270 RAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTP 346 (459)
T ss_pred cccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhH
Confidence 4 667665543222 234455555555555554222 347999999999999988888887643221 0000 122
Q ss_pred HHHHHHHHHHH-hcCChHHHHHHHHhCCCCCCHHHHHHHHHH-HHHcCChhHHHH----HHHHHhCCCCCCcchHHHHHH
Q 005305 470 MHYACMIELLG-REGLLDEAFALIRGAPFKTTKNMWAALLTA-CRVNGNLELGKF----AAEKLYGMEPEKLSNYVVLLN 543 (703)
Q Consensus 470 ~~~~~li~~~~-~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a-~~~~g~~~~a~~----~~~~~~~~~p~~~~~~~~l~~ 543 (703)
..|+ |++++. -.-..++|++-++.+...-....-..-+.. -.++.+-+++.+ .+++.+++- ......-++
T Consensus 347 Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~Ak 422 (459)
T KOG4340|consen 347 YLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAK 422 (459)
T ss_pred HHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 2232 344444 345677776665543210000000000110 012222222222 233333221 123456677
Q ss_pred HHHhCCChHHHHHHHHHHHh
Q 005305 544 IYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 544 ~y~~~g~~~~A~~~~~~m~~ 563 (703)
+|.+..++..++++|..-.+
T Consensus 423 iyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 423 IYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred hhccccccHHHHHHHHHHHh
Confidence 78888899999999877654
No 104
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.41 E-value=0.00013 Score=80.52 Aligned_cols=378 Identities=13% Similarity=0.028 Sum_probs=222.7
Q ss_pred chHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCC-CCChhhHHHHHHHH
Q 005305 166 YMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS-DCGSRTFATMIRAS 241 (703)
Q Consensus 166 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~ 241 (703)
..|..|-..|...-+...|.+.|+..-+ -|..+|-...+.|++..++++|+.+.-.--+... ..-...|....-.+
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 4678888888888888999999987765 4677899999999999999999988332221110 00111233333445
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHH---HHHHHHcCCcHHHHH
Q 005305 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI---IAGYALHGYSEEALD 318 (703)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~ 318 (703)
...++...+..-++...+.. +.|...|..|..+|..+|++..|.++|++...-++.+|-.- ...-+..|.+.+|+.
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHH
Confidence 66677777777777777765 67889999999999999999999999988776555443322 223456899999998
Q ss_pred HHHHHHHC------CCCCCHhhHHHHHHHHhccCCH-------HHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHH
Q 005305 319 LYYEMRDS------GVKMDHFTFSMIIRICTRLASL-------EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385 (703)
Q Consensus 319 l~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 385 (703)
.+...... +..--..++..+...+...|-. +.+.+.+..++......+...|-.+ .+
T Consensus 652 ~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sd 721 (1238)
T KOG1127|consen 652 ALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SD 721 (1238)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hH
Confidence 88776542 1111112222222222222222 2233333333332222233333222 22
Q ss_pred HHHHhhhcCcCChh--hHHHHHHH-HHhcCCH---H---HHHHHHHHHHHcCCCcCHHHHHHHHHHHHc----cC----C
Q 005305 386 ARHVFDKMLCKNVI--SWNALIAG-YGNHGRG---E---EAVELFEQMLLNGMRPNHVTFLAVLSACSR----SG----L 448 (703)
Q Consensus 386 A~~~f~~m~~~~~~--~~~~li~~-~~~~g~~---~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g----~ 448 (703)
|..+|-... ||.+ .+..++.. +-..+.. + -+.+.+-.-+. ...+..+|..+...+.+ .| +
T Consensus 722 ac~~f~q~e-~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~ 798 (1238)
T KOG1127|consen 722 ACYIFSQEE-PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKD 798 (1238)
T ss_pred HHHHHHHhc-ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchh
Confidence 333343332 3321 11111111 1111111 1 01111111111 11123344444333322 22 2
Q ss_pred HHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005305 449 SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEK 526 (703)
Q Consensus 449 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 526 (703)
...|...+...++ --..+...|+.| ..++..|++.-|..-|-+. .. +....+|..+...|....+++-|..++.+
T Consensus 799 ~~~Ai~c~KkaV~--L~ann~~~WnaL-GVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 799 ACTAIRCCKKAVS--LCANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHHHHHHHHHH--HhhccHHHHHHH-HHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHh
Confidence 2355566655554 122344455544 4446667887777666542 22 34667899999899999999999999999
Q ss_pred HhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 527 ~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
...++|.|...|.-...+-...|+.-++..+|..
T Consensus 876 ~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 876 VQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 9999999999998888888888988888888876
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=4.6e-07 Score=57.99 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=23.4
Q ss_pred CCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 005305 464 KIKPRAMHYACMIELLGREGLLDEAFALIRGAP 496 (703)
Q Consensus 464 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 496 (703)
|+.||..+|+.||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
No 106
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.33 E-value=4.5e-05 Score=74.96 Aligned_cols=179 Identities=15% Similarity=0.085 Sum_probs=119.5
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc--CC-h---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH----H
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC--KN-V---ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV----T 435 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t 435 (703)
....+..+...|.+.|++++|...|+++.. |+ . ..|..+...|...|++++|+..|+++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 455667777778888888888888887743 22 1 35666777888888888888888888774 33321 3
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHhHhhcCCCCch-HHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005305 436 FLAVLSACSRS--------GLSERGWEIFQSMSRDHKIKPRA-MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA 506 (703)
Q Consensus 436 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 506 (703)
+..+..++.+. |+.++|.+.|+.+.+. .|+. ..+..+... +....... .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~~-----------~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRLA-----------GKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHHH-----------HHHHH
Confidence 44444455443 6677788888877663 2332 122111111 11111100 01124
Q ss_pred HHHHHHHcCChhHHHHHHHHHhCCCCCC---cchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 507 LLTACRVNGNLELGKFAAEKLYGMEPEK---LSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 507 ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+...+...|+++.|...+++++...|++ +..+..++.+|.+.|++++|.+.++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5566788999999999999999887764 468899999999999999999999888754
No 107
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=0.0021 Score=69.62 Aligned_cols=404 Identities=15% Similarity=0.168 Sum_probs=236.5
Q ss_pred CcccHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh-C-------C-
Q 005305 94 SAGICSQIEK---LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLST-G-------F- 161 (703)
Q Consensus 94 ~~~~~~~li~---~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~-g-------~- 161 (703)
|.++-.+|+. |+..|+.+.|++-.+.++ +...|..+.+.|.+.++++-|+-.+..|... | .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 6677778876 788899998888766554 3467888999999888888887777666432 1 1
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHH
Q 005305 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRAS 241 (703)
Q Consensus 162 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 241 (703)
.++ ..-....-.....|.+++|+.++.+-.. |..|=..|-..|.+++|+++-+.=-+ +. -..||-.-..-+
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR--iH-Lr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR--IH-LRNTYYNYAKYL 868 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc--ee-hhhhHHHHHHHH
Confidence 121 2222333344567888999998887765 33455667778899999888654211 11 123555555555
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHH
Q 005305 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYY 321 (703)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 321 (703)
-..+|.+.|.+.|+.. | .+-..+...|. .+...-....+++.++....| ...-.-..|+.+.|+.+|.
T Consensus 869 ear~Di~~AleyyEK~---~-~hafev~rmL~------e~p~~~e~Yv~~~~d~~L~~W--WgqYlES~GemdaAl~~Y~ 936 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKA---G-VHAFEVFRMLK------EYPKQIEQYVRRKRDESLYSW--WGQYLESVGEMDAALSFYS 936 (1416)
T ss_pred HhhccHHHHHHHHHhc---C-ChHHHHHHHHH------hChHHHHHHHHhccchHHHHH--HHHHHhcccchHHHHHHHH
Confidence 5667777777776543 2 11112222111 223344444555555533332 3333345788999999887
Q ss_pred HHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhH
Q 005305 322 EMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISW 401 (703)
Q Consensus 322 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~ 401 (703)
..+. |-++....+-.|+.++|.++-++- .|....--|..+|-..|++.+|..+|.+.. ++
T Consensus 937 ~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-----af 996 (1416)
T KOG3617|consen 937 SAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ-----AF 996 (1416)
T ss_pred Hhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HH
Confidence 7653 345566667778888887765532 256667778899999999999998887652 22
Q ss_pred HHHHHHHHhcC---------------CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHH---------HH
Q 005305 402 NALIAGYGNHG---------------RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI---------FQ 457 (703)
Q Consensus 402 ~~li~~~~~~g---------------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~---------~~ 457 (703)
..-|..|-.++ +.-.|-+.|++. |.. +...+..|-++|.+.+|+++ ++
T Consensus 997 snAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen 997 SNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred HHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHH
Confidence 22222222222 222333344332 111 11223345666766666543 23
Q ss_pred HhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhC---CCCCC
Q 005305 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG---MEPEK 534 (703)
Q Consensus 458 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~---~~p~~ 534 (703)
-+.++..-..|+...+-..+.+....++++|..++-... -|.-.+..|.. .++.--++..+.+.- -+|+.
T Consensus 1069 lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar------~~~~AlqlC~~-~nv~vtee~aE~mTp~Kd~~~~e 1141 (1416)
T KOG3617|consen 1069 LIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR------EFSGALQLCKN-RNVRVTEEFAELMTPTKDDMPNE 1141 (1416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH------HHHHHHHHHhc-CCCchhHHHHHhcCcCcCCCccH
Confidence 334444445567777777777777778888877764321 23333344433 334444444444431 11221
Q ss_pred ---cchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 535 ---LSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 535 ---~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
......+++.+.++|.+..|.+=|.+
T Consensus 1142 ~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1142 QERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 23566788888888888877765543
No 108
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.32 E-value=0.0011 Score=63.65 Aligned_cols=274 Identities=14% Similarity=0.103 Sum_probs=135.9
Q ss_pred cCCCCcccchhhcccccCccCCCCCc-ccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHH-HHHHhccCCh
Q 005305 70 PKPNKIYTEELKESSLPDTQMKKPSA-GICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDAL-ISACIGLRSI 146 (703)
Q Consensus 70 ~k~~~~~~aa~~~~~f~~~~~~~p~~-~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l-l~~~~~~~~~ 146 (703)
.+..++.++ .+++....++.|.. ...+.+-- |-+..++..|-+.|+++... .|...-|..- ..++-+.+.+
T Consensus 21 I~d~ry~Da---I~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 21 IRDARYADA---IQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred HHHhhHHHH---HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHHHHhccc
Confidence 344566666 66665555554422 22333333 66666666666666666553 2333333211 2233345556
Q ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHH--HH--HhCCChHHHHHHHccCCC-CCcccHHHHHHHHHhCCChhHHHHHHHH
Q 005305 147 REVKRVFSYMLSTGFEPDLYMRNRVLL--MH--VRCGMMIDARRLFDEMPE-RNLVSCNMIIAGMIDSGDYLEAFLLFLD 221 (703)
Q Consensus 147 ~~a~~l~~~~~~~g~~~~~~~~~~Li~--~y--~~~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~A~~~~~~ 221 (703)
..|..+...|... ++ ..+..+. .- -..+++..++.+.++.+. .+..+-+...-...+.|++++|++-|..
T Consensus 95 ADALrV~~~~~D~---~~--L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 95 ADALRVAFLLLDN---PA--LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHHHHhcCC---HH--HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHH
Confidence 6666666555421 11 1121111 11 134666666777776663 4444444444445567777777777777
Q ss_pred hHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-------------cHH--------HHHHHH-------
Q 005305 222 LWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGD-------------NVF--------VSCALI------- 273 (703)
Q Consensus 222 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-------------~~~--------~~~~Li------- 273 (703)
..+-+---....|+..+..+ +.++++.|.+...+++.+|+.. |+. .-.+++
T Consensus 170 AlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 66543333344565555443 4567777777777777765422 110 111222
Q ss_pred HHHHhCCCHHHHHHHHhhcCCC-----CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCH
Q 005305 274 DMYSKCGSIEDAQGVFDEMSEK-----TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348 (703)
Q Consensus 274 ~~y~~~g~~~~A~~~f~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 348 (703)
..+.+.|+.+.|.+.+..|+.+ |++|...+.-.- ..+++.+..+-+.-+...+. ....||..++-.|++..-+
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHH
Confidence 2234456666666666666543 444443332211 13334444443444443322 2344566666666665555
Q ss_pred HHHHHHHHH
Q 005305 349 EHAKQAHAG 357 (703)
Q Consensus 349 ~~a~~~~~~ 357 (703)
+.|..++.+
T Consensus 327 ~lAADvLAE 335 (459)
T KOG4340|consen 327 DLAADVLAE 335 (459)
T ss_pred hHHHHHHhh
Confidence 555555443
No 109
>PLN02789 farnesyltranstransferase
Probab=98.30 E-value=0.00023 Score=72.42 Aligned_cols=164 Identities=11% Similarity=0.051 Sum_probs=93.9
Q ss_pred CHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCH--HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHH
Q 005305 382 RIEDARHVFDKMLC---KNVISWNALIAGYGNHGRG--EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456 (703)
Q Consensus 382 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 456 (703)
+++++...++++.. ++..+|+.-...+.+.|+. ++++.+++++.+...+ |..+|.....++.+.|+++++.+.+
T Consensus 87 ~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~ 165 (320)
T PLN02789 87 DLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYC 165 (320)
T ss_pred hHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34555555555432 2333455443333344432 4556666666653211 3455666666666666666666666
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHhc---CC----hHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHc----CChhHHHHH
Q 005305 457 QSMSRDHKIKPRAMHYACMIELLGRE---GL----LDEAFALIRG-APFKT-TKNMWAALLTACRVN----GNLELGKFA 523 (703)
Q Consensus 457 ~~m~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~-m~~~p-~~~~~~~ll~a~~~~----g~~~~a~~~ 523 (703)
+.+++. -..+...|+.....+.+. |. .+++.++..+ +...| |...|+-+...+... +...++...
T Consensus 166 ~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 166 HQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 666552 123334444444333332 22 2345555533 44445 456888877777763 344668888
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhC
Q 005305 524 AEKLYGMEPEKLSNYVVLLNIYNSS 548 (703)
Q Consensus 524 ~~~~~~~~p~~~~~~~~l~~~y~~~ 548 (703)
+.+++..+|+++.+...|+++|+..
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8888888999888999999999864
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.29 E-value=0.00017 Score=82.12 Aligned_cols=217 Identities=18% Similarity=0.178 Sum_probs=170.6
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-C---CCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-C-cccHHHHH
Q 005305 231 SRTFATMIRASAGLELISVGKQLHSCALKMG-F---GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-T-TVGWNTII 304 (703)
Q Consensus 231 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~---~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~-~~~~~~li 304 (703)
+..|..-+......++++.|+++.+++++.= + +.-..+|.+++++-..-|.-+...++|++..+- | ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4567777888888899999999988887641 2 123467888888888888888899999988753 3 34688899
Q ss_pred HHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CchHHHHHHHhhHHhcCCH
Q 005305 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG-LDIVANSALVDFYSKWGRI 383 (703)
Q Consensus 305 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~ 383 (703)
..|.+.+..++|.++|+.|.+. ..-....|...+..+.+...-+.|..++.++++.-.. -.+.+..-.+++-.++|+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9999999999999999999875 3345667888888888988889999999999885322 2466777788888999999
Q ss_pred HHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCC
Q 005305 384 EDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGL 448 (703)
Q Consensus 384 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~ 448 (703)
+.++.+|+.... +-...|+..|..=.++|+.+.+..+|++....++.|-. ..|..-|.-=-..|+
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 999999998853 34678999999999999999999999999998888765 444444443334444
No 111
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=0.002 Score=66.98 Aligned_cols=234 Identities=13% Similarity=0.058 Sum_probs=150.0
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHhccCCHHHHHHHHHHHHHcCCCC--c----hHHHHH
Q 005305 300 WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTF-SMIIRICTRLASLEHAKQAHAGLVRHGFGL--D----IVANSA 372 (703)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~----~~~~~~ 372 (703)
...+.++.-+..+++.|++-+....+.. ...|| +..-.++...+........-...++.|... + ......
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3345555666677777777777766653 33344 334445666666665555555554443221 0 011222
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCc--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCH
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLC--KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLS 449 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~ 449 (703)
+..+|.+.++.+.|...|.+... ++.. ...+....++++.......- +.|.. .-...=...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 44578888999999999988632 2211 12233445666666555544 34443 1122225667889999
Q ss_pred HHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKTTK-NMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 450 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
..|...+.++++ .-+-|...|..-.-.|.+.|.+.+|++-.+. +...|+. ..|.-=..++....+++.|...+.+.
T Consensus 375 ~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 3366788899999999999999999887665 3334543 35555555666677899999999999
Q ss_pred hCCCCCCcchHHHHHHHHHh
Q 005305 528 YGMEPEKLSNYVVLLNIYNS 547 (703)
Q Consensus 528 ~~~~p~~~~~~~~l~~~y~~ 547 (703)
++.+|++...-..+.+++..
T Consensus 453 le~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HhcCchhHHHHHHHHHHHHH
Confidence 99999987666655555554
No 112
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.25 E-value=6.6e-05 Score=71.07 Aligned_cols=118 Identities=15% Similarity=0.145 Sum_probs=94.3
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HHcCC--hhHH
Q 005305 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTAC-RVNGN--LELG 520 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~-~~~g~--~~~a 520 (703)
.++.+++...++...+ .-+.+...|..+...|...|++++|...|++. ...| +...+..+..+. ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5566777777776665 34567788888888899999999999888874 3445 566777777764 66676 5899
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
...++++++.+|+++.++..|+..+.+.|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999987654
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.24 E-value=3.4e-05 Score=69.04 Aligned_cols=121 Identities=13% Similarity=-0.028 Sum_probs=74.9
Q ss_pred HHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 005305 419 ELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF 497 (703)
Q Consensus 419 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 497 (703)
.+|++..+ +.|+. +.....++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444 34443 33445566667777777777776654 22335566666666777777777777777653 22
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 498 KT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 498 ~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
.| +...|..+..++...|+.++|...+++++++.|+++..|....++.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 33 4556666666777777777777777777777777766666555544
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.19 E-value=0.0097 Score=62.01 Aligned_cols=74 Identities=11% Similarity=0.050 Sum_probs=44.6
Q ss_pred hhhhhhhccccccCCCCcccchhhcccccCccCCCCCc-ccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHH
Q 005305 58 ECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSA-GICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDA 135 (703)
Q Consensus 58 ~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~-~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 135 (703)
|+..|+.||.-+.. ..+++. +..++++...-|.. ..|..-|. .....+++...++|.+....- .+...|..
T Consensus 19 di~sw~~lire~qt-~~~~~~---R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv---LnlDLW~l 91 (656)
T KOG1914|consen 19 DIDSWSQLIREAQT-QPIDKV---RETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV---LNLDLWKL 91 (656)
T ss_pred cHHHHHHHHHHHcc-CCHHHH---HHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---hhHhHHHH
Confidence 66677777776555 366666 66666665554443 34666676 666777777777777666532 33444444
Q ss_pred HHH
Q 005305 136 LIS 138 (703)
Q Consensus 136 ll~ 138 (703)
-|.
T Consensus 92 Yl~ 94 (656)
T KOG1914|consen 92 YLS 94 (656)
T ss_pred HHH
Confidence 443
No 115
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=9.9e-05 Score=77.00 Aligned_cols=216 Identities=16% Similarity=0.128 Sum_probs=157.1
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CcccHHHHHHHHHHcCCcHHHH
Q 005305 241 SAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK---TTVGWNTIIAGYALHGYSEEAL 317 (703)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~ 317 (703)
+.+.|++.+|.-.|+..++.. |.+...|--|...-...++-..|+..+.+..+- |....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 346678888888888888876 667888888888888888888888888877653 4455666667788888888999
Q ss_pred HHHHHHHHCCCC--------CCHhhHHHHHHHHhccCCHHHHHHHHHHHH-HcCCCCchHHHHHHHhhHHhcCCHHHHHH
Q 005305 318 DLYYEMRDSGVK--------MDHFTFSMIIRICTRLASLEHAKQAHAGLV-RHGFGLDIVANSALVDFYSKWGRIEDARH 388 (703)
Q Consensus 318 ~l~~~m~~~g~~--------pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 388 (703)
..|+.-.....+ ++..+-.. ........+....++|-.+. ..+..+|+.+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 988877553210 00000000 11112222334444454444 45545788899999999999999999999
Q ss_pred HhhhcC--c-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 389 VFDKML--C-KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 389 ~f~~m~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
.|+... + .|...||-|...++...+.++|+..|++.++ ++|+. .....|.-+|...|.+++|...|-.+..
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999874 3 4678999999999999999999999999998 68887 3444566689999999999988866543
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.18 E-value=3.5e-05 Score=68.95 Aligned_cols=107 Identities=10% Similarity=-0.052 Sum_probs=90.6
Q ss_pred HHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCC
Q 005305 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGME 531 (703)
Q Consensus 454 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 531 (703)
.+++...+ +.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|...++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444443 3454 3556788889999999999999884 3444 67799999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 532 PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 532 p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
|+++..+..++.+|...|++++|.+.++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987644
No 117
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.14 E-value=5.9e-05 Score=66.51 Aligned_cols=120 Identities=11% Similarity=0.117 Sum_probs=97.9
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 468 RAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
+.+..-.+...+...|++++|.++|+-+ ...| +..-|-.|...|...|++++|...+.++..++|+|+.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445556667778899999999999874 3345 5668889999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHHH
Q 005305 546 NSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610 (703)
Q Consensus 546 ~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 610 (703)
...|+.+.|.+-|+...... + .+|+..++.+++...+..+.+
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHhhc
Confidence 99999999999999876421 1 457777777777777766543
No 118
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=4.3e-06 Score=54.24 Aligned_cols=34 Identities=47% Similarity=0.857 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 432 (703)
++||+||.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
No 119
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.13 E-value=7.5e-05 Score=79.83 Aligned_cols=216 Identities=13% Similarity=0.154 Sum_probs=170.6
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 005305 262 FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI 341 (703)
Q Consensus 262 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 341 (703)
++|-......+...+.++|-...|..+|+++ ..|...|..|...|+..+|..+..+-.+ -+||+.-|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4566667778889999999999999999985 4688899999999999999999888777 37899999888888
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHH
Q 005305 342 CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAV 418 (703)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 418 (703)
.....-+++|.++.++.... .-..+.......++++++.+.|+.-.. --..+|-....+..+.+++..|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 77777778888777765432 112222223346889999999986543 24568888888888999999999
Q ss_pred HHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 419 ELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 419 ~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
+.|..-.. ..||. ..|+.+-.+|.+.++-.+|...+.+..+ +. ..+...|-..+-.....|.+++|.+.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99998876 58877 7899999999999999999999999988 55 334445656666778899999999998875
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=9.2e-05 Score=79.21 Aligned_cols=189 Identities=17% Similarity=0.171 Sum_probs=140.2
Q ss_pred CCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005305 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441 (703)
Q Consensus 362 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 441 (703)
+++|-...-..+...+.++|-...|..+|++. ..|--.|..|...|+..+|..+..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555666677888999999999999999875 5677788899999999999998888776 3788888888888
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcCChhH
Q 005305 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKT-TKNMWAALLTACRVNGNLEL 519 (703)
Q Consensus 442 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~a~~~~g~~~~ 519 (703)
......-+++|+++++..... .-..+.....+.++++++.+.++. +.+.| -..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 887777888888888766441 111112222346777777777765 44444 34477777777777778888
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 520 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
|..+|.....++|++...|+.+..+|.+.|+-.+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 8888888888888888888888888888888888888877777655
No 121
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.09 E-value=0.021 Score=63.23 Aligned_cols=213 Identities=14% Similarity=0.072 Sum_probs=118.6
Q ss_pred CCcccchhhcccccCccCCCCCcccHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHH
Q 005305 73 NKIYTEELKESSLPDTQMKKPSAGICSQIEK--LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVK 150 (703)
Q Consensus 73 ~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~--~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 150 (703)
+++..| ....++...+.||....-++-+ +.+.|+.++|..+++.....+ ..|..|...+-..|...+..+++.
T Consensus 23 ~qfkka---l~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 23 SQFKKA---LAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHHHHH---HHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHH
Confidence 344445 4444555555567666555555 788888888888888776654 347788888888888888888888
Q ss_pred HHHHHHHHhCCCCCcchHHHHHHHHHhCCChHH----HHHHHccCCCCCcccHHHHHHHHHhCCC-hh---------HHH
Q 005305 151 RVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID----ARRLFDEMPERNLVSCNMIIAGMIDSGD-YL---------EAF 216 (703)
Q Consensus 151 ~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~----A~~~f~~m~~~d~~~~~~li~~~~~~g~-~~---------~A~ 216 (703)
.+++...+. .|+......+..+|+|.+.+.+ |.+++...+++--.-|+ +++.+.+.-. ++ -|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHHhccCCcccccchhHHHHH
Confidence 888888765 4556677777788888776654 66777766654444444 4444443311 11 233
Q ss_pred HHHHHhHHcCCCC-ChhhHHHHHHHHhcCCChHHHHHHHH-HHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 005305 217 LLFLDLWEEFSDC-GSRTFATMIRASAGLELISVGKQLHS-CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293 (703)
Q Consensus 217 ~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~-~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 293 (703)
+.++.+.+.+-+. +..-...-+..+...|.+++|..++. .....-...+...-+.-++.+.+++++.+-.++-.++.
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 3344443332111 11111111222333455555555552 22222223334444455555555665555544444433
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.00022 Score=67.52 Aligned_cols=135 Identities=17% Similarity=0.125 Sum_probs=105.5
Q ss_pred CCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 005305 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA--PFKTTKNMWAA 506 (703)
Q Consensus 429 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ 506 (703)
..|+......+-.++...|+-+....+...... ..+.+......++....+.|++.+|...|.+. +.++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 355443335555677777887777777666543 33445556666888888999999999999885 33668889999
Q ss_pred HHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 507 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
+..+|-+.|+.+.|+..+.+++++.|+++..++.|+-.|.-.|+.+.|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999988776443
No 123
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=7.4e-06 Score=53.08 Aligned_cols=35 Identities=43% Similarity=0.666 Sum_probs=32.7
Q ss_pred ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCH
Q 005305 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH 332 (703)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 332 (703)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.03 E-value=0.00035 Score=68.65 Aligned_cols=181 Identities=17% Similarity=0.048 Sum_probs=123.6
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--chHHHHHHHhhHHhcCCHHHHHHHhhhcCc--CC-hh---hHH
Q 005305 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKMLC--KN-VI---SWN 402 (703)
Q Consensus 331 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~~-~~---~~~ 402 (703)
....+-.....+...|+++.|...++.+++..... ....+..+...|.+.|++++|...|+++.+ |+ .. .|.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 44566677778889999999999999998864321 124667888999999999999999999843 22 22 455
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHH
Q 005305 403 ALIAGYGNH--------GRGEEAVELFEQMLLNGMRPNHV-TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473 (703)
Q Consensus 403 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 473 (703)
.+...+.+. |+.++|.+.|+++... .|+.. ....+... .. ...... ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---------~~~~~~---------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---------LRNRLA---------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---------HHHHHH---------HHHH
Confidence 555556554 7789999999999875 55542 22111111 00 000010 1122
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCC
Q 005305 474 CMIELLGREGLLDEAFALIRGA----PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532 (703)
Q Consensus 474 ~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 532 (703)
.+.+.|.+.|++++|...+++. +..| ....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5667788899999998888764 2223 345788888999999999999988887766555
No 125
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.03 E-value=0.00044 Score=77.61 Aligned_cols=140 Identities=11% Similarity=0.026 Sum_probs=111.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHH
Q 005305 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475 (703)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 475 (703)
++..+-.|.....+.|.+++|+.+++...+ +.||. .....+..++.+.+.+++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 467777788888899999999999999888 57877 5677777888999999999999988876 334456677788
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHH
Q 005305 476 IELLGREGLLDEAFALIRGAP-FKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540 (703)
Q Consensus 476 i~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 540 (703)
..++.+.|++++|.++|++.. ..|+ ..+|.++..++...|+.++|..+++++++...+....|+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 888889999999999998853 3444 6688888899999999999999999998766554444443
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.01 E-value=0.00055 Score=64.79 Aligned_cols=154 Identities=8% Similarity=0.076 Sum_probs=109.4
Q ss_pred HhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHH
Q 005305 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453 (703)
Q Consensus 374 i~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 453 (703)
+-.|.+.|+++......+.+..+. ..|...++.++++..+++..+.. ..|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777777776654443332221 01223566778888888777642 235577888888899999999999
Q ss_pred HHHHHhHhhcCCCCchHHHHHHHHH-HHhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 005305 454 EIFQSMSRDHKIKPRAMHYACMIEL-LGREGL--LDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLY 528 (703)
Q Consensus 454 ~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 528 (703)
..|+...+ -.+.+...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...+++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998876 233467777777776 467777 58999999874 4445 56688888888999999999999999999
Q ss_pred CCCCCCcchH
Q 005305 529 GMEPEKLSNY 538 (703)
Q Consensus 529 ~~~p~~~~~~ 538 (703)
++.|.+..-+
T Consensus 172 ~l~~~~~~r~ 181 (198)
T PRK10370 172 DLNSPRVNRT 181 (198)
T ss_pred hhCCCCccHH
Confidence 9888765443
No 127
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.01 E-value=0.029 Score=58.63 Aligned_cols=439 Identities=13% Similarity=0.110 Sum_probs=241.5
Q ss_pred CcccHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 005305 94 SAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLL 173 (703)
Q Consensus 94 ~~~~~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~ 173 (703)
|+.+|+.||...+....+++.+.++++... ++-....|..-+..-.+.++++..+.+|++.+..-+ +...|..-++
T Consensus 19 di~sw~~lire~qt~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl~ 94 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYLS 94 (656)
T ss_pred cHHHHHHHHHHHccCCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHHH
Confidence 888999999955666999999999999875 355667788888888899999999999999887643 3445554444
Q ss_pred HHHh-CCChHHHH----HHHcc------CCCCCcccHHHHHHH---------HHhCCChhHHHHHHHHhHHcCCCCChhh
Q 005305 174 MHVR-CGMMIDAR----RLFDE------MPERNLVSCNMIIAG---------MIDSGDYLEAFLLFLDLWEEFSDCGSRT 233 (703)
Q Consensus 174 ~y~~-~g~~~~A~----~~f~~------m~~~d~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p~~~t 233 (703)
---+ .|....++ +.|+- |.-..-..|+..|.- |..+.+.+...++|.++....+.
T Consensus 95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~----- 169 (656)
T KOG1914|consen 95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH----- 169 (656)
T ss_pred HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc-----
Confidence 2222 23333221 22221 222333446666543 23344455556666666543211
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC------CCc----------
Q 005305 234 FATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE------KTT---------- 297 (703)
Q Consensus 234 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~------~~~---------- 297 (703)
++ ++++..........|..+...++. -+...+..|+++++++.. ++.
T Consensus 170 ------------nl---EkLW~DY~~fE~~IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~ 232 (656)
T KOG1914|consen 170 ------------NL---EKLWKDYEAFEQEINIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKD 232 (656)
T ss_pred ------------cH---HHHHHHHHHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChH
Confidence 11 111111111000111111111111 011223334444433321 011
Q ss_pred -----ccHHHHHHHHHHcCCc--------HHHHHHHHH-HHHCCCCCCHhhH-HHHH----HHHhccCC-------HHHH
Q 005305 298 -----VGWNTIIAGYALHGYS--------EEALDLYYE-MRDSGVKMDHFTF-SMII----RICTRLAS-------LEHA 351 (703)
Q Consensus 298 -----~~~~~li~~~~~~g~~--------~~A~~l~~~-m~~~g~~pd~~t~-~~ll----~a~~~~~~-------~~~a 351 (703)
..|-.+|.-=..++-- ....-.+++ |.-.+..|+..-. +.-+ +.+...|+ -+++
T Consensus 233 e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~ 312 (656)
T KOG1914|consen 233 EIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEA 312 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHH
Confidence 1133333321111100 011111111 1112333332211 1111 11222222 3455
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHhhHHhcC---CHHHHHHHhhhcC---cC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005305 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWG---RIEDARHVFDKML---CK-NVISWNALIAGYGNHGRGEEAVELFEQM 424 (703)
Q Consensus 352 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~m~---~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 424 (703)
..+++..+..-...+..+|.++.+.--..- ..+.....+++.. .. -..+|-..|..-.+..-...|..+|.+.
T Consensus 313 ~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 313 ASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHH
Confidence 556665555333334444444443211111 1333333444332 11 2235667777777777789999999999
Q ss_pred HHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC---CCC
Q 005305 425 LLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF---KTT 500 (703)
Q Consensus 425 ~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~p~ 500 (703)
.+.+..+ ......+++.- .-+++.+-|.++|+.=.+.+| -++..-.+.++-+.+.++-..|..+|++... .||
T Consensus 393 R~~~r~~hhVfVa~A~mEy-~cskD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ 469 (656)
T KOG1914|consen 393 REDKRTRHHVFVAAALMEY-YCSKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD 469 (656)
T ss_pred hhccCCcchhhHHHHHHHH-HhcCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence 9998888 44555556554 456788999999998776444 4455567888999999999999999998532 333
Q ss_pred --HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC----cchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 501 --KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK----LSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 501 --~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
..+|..+|.--..-|+......+-++....-|.+ ...-..+++.|.-.+.+..-..-++.|
T Consensus 470 ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 470 KSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 4699999999999999999999888776544421 234557788888888777666555555
No 128
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.00 E-value=0.005 Score=60.35 Aligned_cols=337 Identities=9% Similarity=0.000 Sum_probs=191.7
Q ss_pred HHHHhCCChHHHHHHHccCCCCCcccHHHHH---HHHHhCCChhHHHHHHHHhHHcCCCCChhhHH-HHHHHHhcCCChH
Q 005305 173 LMHVRCGMMIDARRLFDEMPERNLVSCNMII---AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFA-TMIRASAGLELIS 248 (703)
Q Consensus 173 ~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~~~~~ 248 (703)
+.+.-.|++.+|+.-|....+-|+..|.++. ..|...|+...|+.=+...++. +||-..-. .-...+.+.|.++
T Consensus 46 k~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHH
Confidence 3344456777777777766666666666554 3455566666666555555442 44422110 1112233445555
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCC
Q 005305 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGV 328 (703)
Q Consensus 249 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 328 (703)
.|..=|+.+++.. |+.. ....++.+.-..++-.. ....+..+..+|+...|+.....+.+- .
T Consensus 124 ~A~~DF~~vl~~~--~s~~---~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~llEi-~ 185 (504)
T KOG0624|consen 124 QAEADFDQVLQHE--PSNG---LVLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHLLEI-Q 185 (504)
T ss_pred HHHHHHHHHHhcC--CCcc---hhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHHHhc-C
Confidence 5555555555443 1100 01111111111111111 112344556688888898888888875 2
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc--CChhhHHHHHH
Q 005305 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KNVISWNALIA 406 (703)
Q Consensus 329 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~~~~~~~~li~ 406 (703)
+.|...+..-..+|...|.+..|..-+..+.+..-+ ++...--+-..+.+.|+.+.++...++..+ ||...
T Consensus 186 ~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~------ 258 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL------ 258 (504)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh------
Confidence 456667777777888888888888777777665433 455566677778888999999888888754 43322
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc-----hHHHHHHHHHHHh
Q 005305 407 GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR-----AMHYACMIELLGR 481 (703)
Q Consensus 407 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~ 481 (703)
+|..-+...+..+.++.|.+. ...+++.++.+-.+...+ ..|. ...+..+-..|..
T Consensus 259 Cf~~YKklkKv~K~les~e~~----------------ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~ 319 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQA----------------IEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYRE 319 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------------HhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccc
Confidence 122222233334444444331 233444444444444443 1233 1122333445566
Q ss_pred cCChHHHHHHHHh-CCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 005305 482 EGLLDEAFALIRG-APFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559 (703)
Q Consensus 482 ~g~~~~A~~~~~~-m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 559 (703)
.|++.+|++...+ +.+.|| +.++.--..||.....++.|+.-++++.+.+|+|..+- .| .+.|.++.+
T Consensus 320 d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r---------eG-le~Akrlkk 389 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR---------EG-LERAKRLKK 389 (504)
T ss_pred cCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH---------HH-HHHHHHHHH
Confidence 7889999888876 455665 56777777888888899999999999999999875432 22 355555555
Q ss_pred HHHhCC
Q 005305 560 TLRRKG 565 (703)
Q Consensus 560 ~m~~~~ 565 (703)
+..++.
T Consensus 390 qs~kRD 395 (504)
T KOG0624|consen 390 QSGKRD 395 (504)
T ss_pred Hhccch
Confidence 544443
No 129
>PLN02789 farnesyltranstransferase
Probab=97.96 E-value=0.0017 Score=66.10 Aligned_cols=193 Identities=9% Similarity=-0.036 Sum_probs=127.4
Q ss_pred cHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 005305 97 ICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLR-SIREVKRVFSYMLSTGFEPDLYMRNRVLLM 174 (703)
Q Consensus 97 ~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~ 174 (703)
+++.+-+ +...++.++|+.++..+.+.. +-+..+|+.--.++...+ +++++...++.+++.. +.+..+|+..-..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3555666 777889999999999998864 334445655555555666 5789999999988765 4555677766555
Q ss_pred HHhCCCh--HHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcC---CC
Q 005305 175 HVRCGMM--IDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL---EL 246 (703)
Q Consensus 175 y~~~g~~--~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---~~ 246 (703)
+.+.|.. +++...++.+.+ +|..+|+...-.+...|+++++++.+.++.+.++. |...|+.....+.+. +.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 6666653 566777766654 56778888888888889999999999999887655 444555444444333 22
Q ss_pred h----HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CCHHHHHHHHhhcCC
Q 005305 247 I----SVGKQLHSCALKMGFGDNVFVSCALIDMYSKC----GSIEDAQGVFDEMSE 294 (703)
Q Consensus 247 ~----~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~----g~~~~A~~~f~~m~~ 294 (703)
. +........+++.. +.|...|+-+...|... ++..+|.+++.+...
T Consensus 195 ~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 195 LEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred ccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 2 34445554555554 55667777777777662 334556666665543
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.95 E-value=0.0003 Score=73.06 Aligned_cols=124 Identities=14% Similarity=0.111 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTAC 511 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 511 (703)
.-..+++..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| |...+..-...|
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34456677777888999999999998762 254 4456788888888888999988774 3334 555666666678
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
...++++.|..+++++..+.|++..+|..|+.+|.+.|++++|.-.++.++
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999999999886
No 131
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.94 E-value=1.7e-05 Score=51.05 Aligned_cols=34 Identities=32% Similarity=0.657 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 005305 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431 (703)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 431 (703)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888877
No 132
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.0015 Score=61.98 Aligned_cols=126 Identities=19% Similarity=0.101 Sum_probs=81.0
Q ss_pred CchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHH
Q 005305 365 LDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVL 440 (703)
Q Consensus 365 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 440 (703)
.|..+.+.++....+.|++..|...|++.. .+|...||.+..+|.+.|+.++|..-|.+..+ +.|+. ..++.+.
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlg 175 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLG 175 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHH
Confidence 355566666666677777777777777663 34566777777777777777777777777666 34443 5566666
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh
Q 005305 441 SACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494 (703)
Q Consensus 441 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 494 (703)
-.+.-.|+.+.|..++..... .-.-+...-..+.-..+..|++++|.++...
T Consensus 176 ms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 176 MSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 666667777777777766654 2222455555666666677777777766654
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.88 E-value=0.00019 Score=63.51 Aligned_cols=97 Identities=15% Similarity=0.186 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...+++.++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 345566677777888888888888764 2234 56677788888888899999999999998899998899999999999
Q ss_pred hCCChHHHHHHHHHHHhCC
Q 005305 547 SSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 547 ~~g~~~~A~~~~~~m~~~~ 565 (703)
..|++++|.+.++...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 9999999999998877543
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.88 E-value=0.0014 Score=67.58 Aligned_cols=135 Identities=17% Similarity=0.212 Sum_probs=68.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH-HHHHHccCCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCCh
Q 005305 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV-LSACSRSGLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLL 485 (703)
Q Consensus 408 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~ 485 (703)
+-..|++++|+..++.++.. .||...|..+ ...+...++.++|.+.++.+.. ..|+ ....-.+.++|.+.|++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcCCh
Confidence 33455555666666555543 4444333332 2445555556666655555544 2233 33344455555555666
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 486 DEAFALIRGAP--FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 486 ~~A~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.+|...+++.. .+-|+..|..|..+|...|+..++..+ ....|...|+|++|.......++
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHHH
Confidence 65555555421 122445555555555555554443332 23344555666666666655554
Q ss_pred C
Q 005305 564 K 564 (703)
Q Consensus 564 ~ 564 (703)
+
T Consensus 454 ~ 454 (484)
T COG4783 454 Q 454 (484)
T ss_pred h
Confidence 3
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.88 E-value=2.2e-05 Score=50.44 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=30.6
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCC
Q 005305 196 LVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229 (703)
Q Consensus 196 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 229 (703)
+.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999998887
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.81 E-value=0.00066 Score=70.54 Aligned_cols=128 Identities=16% Similarity=0.108 Sum_probs=103.0
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHcc
Q 005305 368 VANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRS 446 (703)
Q Consensus 368 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~ 446 (703)
....+|+..+...++++.|..+|+++.+.++..+-.|+..+...++-.+|++++++.+.. .| |...+..-...|.+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 444556667777899999999999998777777777888888888999999999999874 44 445555555668889
Q ss_pred CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 005305 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT 499 (703)
Q Consensus 447 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 499 (703)
++.+.|..+.+++.+ -.+.+..+|..|+..|.+.|++++|+..++.+|..|
T Consensus 248 ~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 248 KKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999999976 334456799999999999999999999999998644
No 137
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.80 E-value=0.0034 Score=70.61 Aligned_cols=129 Identities=14% Similarity=0.113 Sum_probs=109.3
Q ss_pred CCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC--cC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHH
Q 005305 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKML--CK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLA 438 (703)
Q Consensus 363 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ 438 (703)
+..+...+-.|.......|..++|+.+++... .| ++..+..+...+.+.+++++|+..+++.... .|+. .....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 45568888899999999999999999999985 34 4557888899999999999999999999984 7776 45556
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 439 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
+..++.+.|.+++|..+|+++.. ..+-+...+..+..++-..|+.++|...|++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66778899999999999999987 33344778889999999999999999999875
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.79 E-value=0.0059 Score=69.50 Aligned_cols=235 Identities=15% Similarity=0.086 Sum_probs=145.4
Q ss_pred ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHh
Q 005305 129 GSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208 (703)
Q Consensus 129 ~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~ 208 (703)
+...+..|+..+...+++++|.++.+..++.. +.....|-.+...|...++.+++..+ .++.....
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~ 95 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQ 95 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccc
Confidence 34566777777777777777777777655542 22223333333355566665555444 22333333
Q ss_pred CCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHH
Q 005305 209 SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGV 288 (703)
Q Consensus 209 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 288 (703)
..++.-...+...|... .-+...+..+..+|.+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++++|.++
T Consensus 96 ~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 96 NLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred ccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHH
Confidence 33332222333333332 2244567778888888999999999999999887 77889999999999999 99999988
Q ss_pred HhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCch
Q 005305 289 FDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH-GFGLDI 367 (703)
Q Consensus 289 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~ 367 (703)
+.+... .|...+++.++.+++.++... .|+.+.+ -.++.+.+... |...-+
T Consensus 172 ~~KAV~-----------~~i~~kq~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~~~ 223 (906)
T PRK14720 172 LKKAIY-----------RFIKKKQYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFTRLV 223 (906)
T ss_pred HHHHHH-----------HHHhhhcchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccchhH
Confidence 876433 377778899999999988875 3333322 11122222221 233334
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHH
Q 005305 368 VANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYG 409 (703)
Q Consensus 368 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 409 (703)
.++-.|-..|-+..+++++..+|..+.+ .|.....-++..|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 4555666677777788888888877743 34445555565554
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.75 E-value=0.0035 Score=64.70 Aligned_cols=119 Identities=13% Similarity=0.083 Sum_probs=100.3
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhH
Q 005305 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTT-KNMWAALLTACRVNGNLEL 519 (703)
Q Consensus 442 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~ 519 (703)
.....|..++|+..++.+.+ ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 45567888999999999877 45566777777888999999999999999874 45676 5677888889999999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 520 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
|...+.....-+|+|+..|..|+..|...|+..+|.....++.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988887765
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.74 E-value=0.013 Score=66.94 Aligned_cols=88 Identities=11% Similarity=0.124 Sum_probs=63.6
Q ss_pred CHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHh
Q 005305 331 DHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN 410 (703)
Q Consensus 331 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 410 (703)
+...+..+..+|.+.|..+++..+++++++.. +.|+.+.|.+...|+.. ++++|.+++.+.. ..|..
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV-----------~~~i~ 181 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI-----------YRFIK 181 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH-----------HHHHh
Confidence 33466667777778888888888888888776 44778888888888888 8888887766542 33666
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCH
Q 005305 411 HGRGEEAVELFEQMLLNGMRPNH 433 (703)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~~p~~ 433 (703)
.+++.++.++|.++... .|+.
T Consensus 182 ~kq~~~~~e~W~k~~~~--~~~d 202 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHY--NSDD 202 (906)
T ss_pred hhcchHHHHHHHHHHhc--Cccc
Confidence 67788888888888773 4443
No 141
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=4.9e-05 Score=47.60 Aligned_cols=31 Identities=42% Similarity=0.800 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGM 429 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 429 (703)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888899988999899999988888764
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.64 E-value=6.3e-05 Score=47.08 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHhHHcCC
Q 005305 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227 (703)
Q Consensus 197 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 227 (703)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.59 E-value=0.0017 Score=57.29 Aligned_cols=113 Identities=11% Similarity=0.019 Sum_probs=79.7
Q ss_pred HHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 005305 420 LFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF 497 (703)
Q Consensus 420 l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 497 (703)
+|++... ..|+. .....+...+...|++++|.+.|+.+.. .-+.+...+..+...|.+.|++++|...+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4445544 34443 4455566667778888888888887766 22446677777888888888888888887764 33
Q ss_pred CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc
Q 005305 498 KT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536 (703)
Q Consensus 498 ~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 536 (703)
.| +...|..+...+...|+.+.|...+++.++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 33 4567777777888888888888888888888888654
No 144
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.021 Score=54.43 Aligned_cols=147 Identities=12% Similarity=0.060 Sum_probs=95.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHH----h
Q 005305 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG----R 481 (703)
Q Consensus 406 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~----~ 481 (703)
..|...|++++|++..+... ..+....+ .....+....+-|.+.++.|.. + .+..+.+.|..++. -
T Consensus 116 ~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhcc
Confidence 35666677777777665511 11111111 2233455566777777777754 1 23344454444443 3
Q ss_pred cCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHH-HHH
Q 005305 482 EGLLDEAFALIRGAP--FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA-EVI 558 (703)
Q Consensus 482 ~g~~~~A~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~-~~~ 558 (703)
.+.+.+|.-+|++|. ..|+..+.+....++...|++++|+.+++.++..+|+++.+...++-.--..|+-.++. +.+
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 456778888888874 36777788888888888899999999999999888888888888877777778776543 444
Q ss_pred HHHH
Q 005305 559 RTLR 562 (703)
Q Consensus 559 ~~m~ 562 (703)
.+++
T Consensus 266 ~QLk 269 (299)
T KOG3081|consen 266 SQLK 269 (299)
T ss_pred HHHH
Confidence 5544
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.51 E-value=0.00093 Score=54.06 Aligned_cols=92 Identities=23% Similarity=0.211 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC
Q 005305 472 YACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549 (703)
Q Consensus 472 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 549 (703)
+..+...+...|++++|.+.+++. ...| +...|..+...+...|+++.|...+++.....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667777888888888888764 3333 34567777788888899999999999999888888888889999999999
Q ss_pred ChHHHHHHHHHHHh
Q 005305 550 KLKEAAEVIRTLRR 563 (703)
Q Consensus 550 ~~~~A~~~~~~m~~ 563 (703)
++++|.+.++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998887764
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.023 Score=53.78 Aligned_cols=166 Identities=16% Similarity=0.108 Sum_probs=115.7
Q ss_pred HHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHH---HHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 005305 369 ANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALI---AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445 (703)
Q Consensus 369 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 445 (703)
++.-++-+...+|+.+.|..+++.+..+=+.|+..+. .-+-..|++++|+++++.+++.. +.|.+++..=+...-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3444455556678888888888776433233322221 12445788999999999999864 2345777666666666
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChhHH
Q 005305 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVN---GNLELG 520 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~---g~~~~a 520 (703)
.|.--+|.+-+....+ .+..|.+.|.-+.+.|...|++++|.-.++++ -..| ++..+..+...+... .+.+.+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6777788887777776 57789999999999999999999999888885 2355 444556666555433 367788
Q ss_pred HHHHHHHhCCCCCCcch
Q 005305 521 KFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~~~ 537 (703)
+..+.+.+++.|.+...
T Consensus 211 rkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHhChHhHHH
Confidence 89999999999965433
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.45 E-value=0.0054 Score=54.94 Aligned_cols=53 Identities=19% Similarity=0.157 Sum_probs=28.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 507 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
|...+...|++++|...++.. .-.+-.+..+..++++|.+.|++++|...++.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 333444455555555544332 11222344566777777777777777777654
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=0.01 Score=56.00 Aligned_cols=182 Identities=15% Similarity=0.189 Sum_probs=131.1
Q ss_pred cCCHHHHHHHhhhcCc--------CChh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHH-HHHHccCCH
Q 005305 380 WGRIEDARHVFDKMLC--------KNVI-SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL-SACSRSGLS 449 (703)
Q Consensus 380 ~g~~~~A~~~f~~m~~--------~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~ 449 (703)
..+.++..+++.++.. ++.. .+..++-+....|+.+.|...++++... + |+..-...+= .-+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 3577888888887731 2222 3444555667788899999999998875 3 5543222211 123456889
Q ss_pred HHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA--PFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 450 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
++|.++++...++ -+.|..+|.-=+-+.-..|+--+|++-+.+. .+..|...|.-|...|...|+++.|...++++
T Consensus 103 ~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999874 3556667776666676777777887766553 23458889999999999999999999999999
Q ss_pred hCCCCCCcchHHHHHHHHHhCC---ChHHHHHHHHHHHhCC
Q 005305 528 YGMEPEKLSNYVVLLNIYNSSG---KLKEAAEVIRTLRRKG 565 (703)
Q Consensus 528 ~~~~p~~~~~~~~l~~~y~~~g---~~~~A~~~~~~m~~~~ 565 (703)
+-..|.++-.+..+++++.-.| +.+-|.+.+.+..+.+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999888888998876665 5566777777776543
No 149
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.36 E-value=0.00064 Score=51.27 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=51.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 507 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
+...+...|++++|...++++++..|+++..+..++.++.+.|++++|..+++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44567889999999999999999999999999999999999999999999999887543
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.36 E-value=0.0004 Score=53.12 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC-ChHHHHHHHHHHHh
Q 005305 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG-KLKEAAEVIRTLRR 563 (703)
Q Consensus 500 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~A~~~~~~m~~ 563 (703)
++.+|..+...+...|++++|+..++++++++|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999 79999999988765
No 151
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.052 Score=51.82 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh
Q 005305 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494 (703)
Q Consensus 448 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 494 (703)
.+.+|.-+|++|.. ..+|+..+.+.+.......|++++|..++++
T Consensus 188 k~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 188 KIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred hhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 34444445554433 2344444444444444444555555544444
No 152
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.34 E-value=0.012 Score=52.68 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=57.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCch--HHHHHHHHHHHhcCChH
Q 005305 411 HGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA--MHYACMIELLGREGLLD 486 (703)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~ 486 (703)
.++...+...++.+......-.. .....+...+...|++++|...|+.+... ...|.. .....|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 55555565566666554211101 12222334455566666666666666552 211111 12223455555666666
Q ss_pred HHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 487 EAFALIRGAPFK-TTKNMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 487 ~A~~~~~~m~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
+|+..++..+.. .....+......+...|+.++|+..++++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666554322 12334455555666666666666666554
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.31 E-value=0.0027 Score=54.45 Aligned_cols=93 Identities=14% Similarity=0.042 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC---cchHHHHHH
Q 005305 472 YACMIELLGREGLLDEAFALIRGAP-FKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK---LSNYVVLLN 543 (703)
Q Consensus 472 ~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 543 (703)
+..++..+.+.|++++|.+.++.+. ..|+ ...+..+..++...|+++.|...+++++...|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3444555555566666655555431 1222 2234445555566666666666666666555553 334566666
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 005305 544 IYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 544 ~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+|.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666544
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.30 E-value=0.00028 Score=56.47 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=43.2
Q ss_pred CChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 005305 483 GLLDEAFALIRGAP-FKT---TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVI 558 (703)
Q Consensus 483 g~~~~A~~~~~~m~-~~p---~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 558 (703)
|++++|+.+++++. ..| +...|-.+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44555555554431 111 233444455555566666666666555 4555555555666678888888888888877
Q ss_pred HH
Q 005305 559 RT 560 (703)
Q Consensus 559 ~~ 560 (703)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 155
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.29 E-value=0.23 Score=50.13 Aligned_cols=240 Identities=17% Similarity=0.140 Sum_probs=149.8
Q ss_pred cCCcHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHH
Q 005305 310 HGYSEEALDLYYEMRDSGVKMDH--FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR 387 (703)
Q Consensus 310 ~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 387 (703)
.|++++|.+-|+.|... |.. .-+..+.-..-+.|+.+.+.++-+..-..-.. -...+.+.+...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHH
Confidence 46666666666666542 111 11222222334566666666666555443211 2356667777788888888888
Q ss_pred HHhhhc-----CcCChh--hHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHccCCHHHHHHHH
Q 005305 388 HVFDKM-----LCKNVI--SWNALIAGYGN---HGRGEEAVELFEQMLLNGMRPNHV-TFLAVLSACSRSGLSERGWEIF 456 (703)
Q Consensus 388 ~~f~~m-----~~~~~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 456 (703)
++.+.- .++|+. .--.|+.+-+. .-+...|...-.+..+ +.||-+ .-.....++.+.|++.++-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 887754 344443 22233332221 2345556655555444 577763 3334457789999999999999
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHhcCChHHH--HH--HHHhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCC
Q 005305 457 QSMSRDHKIKPRAMHYACMIELLGREGLLDEA--FA--LIRGAPFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGME 531 (703)
Q Consensus 457 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A--~~--~~~~m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 531 (703)
+.+-+ ..|.+..+...+ +.|.|+.... .+ -+..| +|| ..+..++..+-...|++..|+...+.+..+.
T Consensus 287 E~aWK---~ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~sl--k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAWK---AEPHPDIALLYV--RARSGDTALDRLKRAKKLESL--KPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHh---cCCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 99966 456666544333 3455643322 11 12233 454 4566677788889999999999999999999
Q ss_pred CCCcchHHHHHHHHHhC-CChHHHHHHHHHHHh
Q 005305 532 PEKLSNYVVLLNIYNSS-GKLKEAAEVIRTLRR 563 (703)
Q Consensus 532 p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~~ 563 (703)
|. .+.|..|.++-... |+-.++...+-+..+
T Consensus 360 pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 360 PR-ESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred ch-hhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 98 57899999997655 999998888877654
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.24 E-value=0.011 Score=64.43 Aligned_cols=66 Identities=23% Similarity=0.240 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 500 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
++..+.++.......|++++|...+++++.++|+ ...|..++.+|...|+.++|.+.+++....+.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 4455666655555667777777777777777774 56777777777777777777777777665443
No 157
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.22 E-value=0.29 Score=49.86 Aligned_cols=111 Identities=17% Similarity=0.179 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV 513 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~ 513 (703)
.+.+..+.-|...|....|.++- +++.+ |+...|...+.+|+..|+|++-.++... +..++-|...+.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~----k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLK----KEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH----HHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 45566677778888888776664 44555 8999999999999999999998887654 2355778899999999
Q ss_pred cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 514 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
.|+..+|.....+ ..+.--+.+|.+.|.|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999888776 12356789999999999998875443
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.17 E-value=0.0066 Score=51.99 Aligned_cols=99 Identities=11% Similarity=0.003 Sum_probs=50.2
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHH
Q 005305 439 VLSACSRSGLSERGWEIFQSMSRDHKIKP-RAMHYACMIELLGREGLLDEAFALIRGAP-FKTT----KNMWAALLTACR 512 (703)
Q Consensus 439 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~a~~ 512 (703)
+...+...|++++|...|..+.+...-.| ....+..+...+.+.|++++|.+.+++.. ..|+ ..++..+..++.
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 87 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQ 87 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHH
Confidence 33444445555555555555543211101 12233445555555566666655555431 1222 334555555666
Q ss_pred HcCChhHHHHHHHHHhCCCCCCcch
Q 005305 513 VNGNLELGKFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 513 ~~g~~~~a~~~~~~~~~~~p~~~~~ 537 (703)
..|+.+.|...++++++..|+++..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 88 ELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HhCChHHHHHHHHHHHHHCcCChhH
Confidence 6667777777777777666765443
No 159
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.17 E-value=0.01 Score=59.68 Aligned_cols=143 Identities=15% Similarity=0.177 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH-HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA-CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357778888888888888889998887542 2233344443333 33356777799999998884 5567778889999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 478 LLGREGLLDEAFALIRGA-PFKTTK----NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
.+.+.|+.+.|..+|++. ..-|.. ..|...+.--.+.|+.+....+.+++.+.-|++. ....+++-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHh
Confidence 999999999999999873 323333 4899999999999999999999988888777742 333344433
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.16 E-value=0.0047 Score=57.19 Aligned_cols=81 Identities=15% Similarity=0.108 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHH
Q 005305 470 MHYACMIELLGREGLLDEAFALIRGA-PFKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 544 (703)
..+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|+++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555566666667777777766653 11121 34677777888888888888888888888888888888888888
Q ss_pred HHhCCC
Q 005305 545 YNSSGK 550 (703)
Q Consensus 545 y~~~g~ 550 (703)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 888776
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.16 E-value=0.0043 Score=57.22 Aligned_cols=94 Identities=14% Similarity=-0.025 Sum_probs=73.7
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHH
Q 005305 468 RAMHYACMIELLGREGLLDEAFALIRGA-PFKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542 (703)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 542 (703)
....|..++..+...|++++|+..|++. ...|+ ..+|..+...+...|+.++|...+++++.+.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3555666777777888888888888764 22222 347888888999999999999999999999999888888888
Q ss_pred HHHH-------hCCChHHHHHHHHHH
Q 005305 543 NIYN-------SSGKLKEAAEVIRTL 561 (703)
Q Consensus 543 ~~y~-------~~g~~~~A~~~~~~m 561 (703)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8888 888888776666554
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.11 E-value=0.013 Score=54.22 Aligned_cols=131 Identities=13% Similarity=0.124 Sum_probs=88.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHH
Q 005305 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN--HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474 (703)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 474 (703)
....+..+...|...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...+....+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 344667777778888889999998888876543332 256777777888888888888888887762 2234555666
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC
Q 005305 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 475 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 550 (703)
+...|...|+...+..-++.. ...+++|...++++++.+|++ |..+...+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 667777777666554332221 112577888899999989885 5566666665554
No 163
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.08 E-value=0.12 Score=55.20 Aligned_cols=182 Identities=19% Similarity=0.220 Sum_probs=100.1
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhh
Q 005305 255 SCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT 334 (703)
Q Consensus 255 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 334 (703)
+.+.+.|-.|+... +.+.++-.|++.+|.++|.+ +|....|+++|.+|+--.
T Consensus 624 ~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMFD------- 675 (1081)
T KOG1538|consen 624 EERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMFD------- 675 (1081)
T ss_pred HHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHHH-------
Confidence 44555665565543 33445556788888877754 555566666666554210
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCH
Q 005305 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRG 414 (703)
Q Consensus 335 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 414 (703)
...-+...|..++-+.+.+.-... ..++.--.+...|+...|+.++|..+ ...+|..
T Consensus 676 ---~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i------------------~~d~gW~ 732 (1081)
T KOG1538|consen 676 ---YAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEI------------------CGDHGWV 732 (1081)
T ss_pred ---HHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhh------------------hhcccHH
Confidence 112223334433333333222110 01111112344566667877777654 3455655
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh
Q 005305 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494 (703)
Q Consensus 415 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 494 (703)
+-+.++-+++-. .+..++..+..-+-+...+..|-++|..|-. ...++++....|++.+|..+-++
T Consensus 733 d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 733 DMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred HHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhh
Confidence 666665555432 2334454444445556667778888877743 23577888888999999988888
Q ss_pred CCC-CCCH
Q 005305 495 APF-KTTK 501 (703)
Q Consensus 495 m~~-~p~~ 501 (703)
.|. .||+
T Consensus 799 hPe~~~dV 806 (1081)
T KOG1538|consen 799 HPEFKDDV 806 (1081)
T ss_pred Cccccccc
Confidence 764 4443
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.07 E-value=0.0036 Score=65.34 Aligned_cols=105 Identities=15% Similarity=0.013 Sum_probs=83.7
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 005305 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNL 517 (703)
Q Consensus 440 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~ 517 (703)
.......|++++|...|+.+.+ .-+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 4556778999999999999987 23445677888888999999999999998874 3445 566788888899999999
Q ss_pred hHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 005305 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 518 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
++|...++++++++|+++.....+..+..
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999998877666554433
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.06 E-value=0.0059 Score=59.25 Aligned_cols=97 Identities=13% Similarity=0.069 Sum_probs=72.0
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCH-HHHHHHHHHHHHcCChhHH
Q 005305 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKTTK-NMWAALLTACRVNGNLELG 520 (703)
Q Consensus 443 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~-~~~~~ll~a~~~~g~~~~a 520 (703)
..+.+++++|...|...++ -.+-|+..|..=..+|.+.|.++.|.+-.+. +.+.|.. .+|..|..++...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4567788888888888876 2233455555567778888888888877665 4555653 4888899999999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHH
Q 005305 521 KFAAEKLYGMEPEKLSNYVVL 541 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~~l 541 (703)
.+.|++.++++|++......|
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHH
Confidence 999999999999986444444
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.05 E-value=0.0019 Score=62.56 Aligned_cols=87 Identities=18% Similarity=0.132 Sum_probs=77.2
Q ss_pred HHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHH
Q 005305 477 ELLGREGLLDEAFALIRG-APFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 554 (703)
+-+.+.+++++|+..|.+ +.+.| |.+-|..-..+|.+.|.++.|.+..+..+.++|....+|..|..+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 345678999999999987 45555 6677788889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 005305 555 AEVIRTLRR 563 (703)
Q Consensus 555 ~~~~~~m~~ 563 (703)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999887764
No 167
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.99 E-value=0.036 Score=51.06 Aligned_cols=110 Identities=10% Similarity=0.045 Sum_probs=68.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHH
Q 005305 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN--HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475 (703)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 475 (703)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|...++...+. .+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 34566666777777888888888888776432222 246667777778888888888888777652 22223445555
Q ss_pred HHHHH-------hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC
Q 005305 476 IELLG-------REGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534 (703)
Q Consensus 476 i~~~~-------~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 534 (703)
...|. +.|++++|... .++|...+++.++.+|++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 55555 34444443332 345666777788888764
No 168
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.99 E-value=0.0095 Score=47.89 Aligned_cols=90 Identities=20% Similarity=0.149 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHH
Q 005305 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479 (703)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 479 (703)
|..+...+...|++++|+..|++..+. .|+ ...+..+...+...+++++|.+.++...+. .+.+...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHH
Confidence 444555666666666666666666553 232 244444555555556666666666555441 122223444444555
Q ss_pred HhcCChHHHHHHHHh
Q 005305 480 GREGLLDEAFALIRG 494 (703)
Q Consensus 480 ~~~g~~~~A~~~~~~ 494 (703)
...|+.++|...+.+
T Consensus 79 ~~~~~~~~a~~~~~~ 93 (100)
T cd00189 79 YKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHhHHHHHHHHHH
Confidence 555555555544443
No 169
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.95 E-value=0.0023 Score=49.44 Aligned_cols=58 Identities=12% Similarity=0.084 Sum_probs=51.7
Q ss_pred HHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 508 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
...+.+.++++.|..++++++.++|+++..|...+.+|.+.|++++|.+.++...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567888999999999999999999999999999999999999999999999887654
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.90 E-value=0.00086 Score=51.08 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=45.4
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
...|++++|...+++++..+|++...+..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999877643
No 171
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.89 E-value=0.016 Score=60.43 Aligned_cols=103 Identities=14% Similarity=0.002 Sum_probs=81.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcC
Q 005305 405 IAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG 483 (703)
Q Consensus 405 i~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 483 (703)
...+...|++++|+.+|++.++. .|+ ...|..+..++.+.|++++|...++.+.+. -+.+...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 45567789999999999999985 454 577778888999999999999999999872 2345778888999999999
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 005305 484 LLDEAFALIRGA-PFKTTKNMWAALLTAC 511 (703)
Q Consensus 484 ~~~~A~~~~~~m-~~~p~~~~~~~ll~a~ 511 (703)
++++|...|++. ...|+......++.-|
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999874 4566655554444444
No 172
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.85 E-value=0.68 Score=47.21 Aligned_cols=105 Identities=12% Similarity=0.156 Sum_probs=72.8
Q ss_pred HhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHH
Q 005305 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453 (703)
Q Consensus 374 i~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 453 (703)
|.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-.++... +-.++-|..++.+|.+.|...+|.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~ 257 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEAS 257 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHH
Confidence 44455667888888887777778888888888888888888766654332 113366777778888888888887
Q ss_pred HHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 454 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
.+...+ | +..-+.+|.++|++.+|.+.--+.
T Consensus 258 ~yI~k~-------~----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 258 KYIPKI-------P----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHhC-------C----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 776552 1 134567788888888887665443
No 173
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.82 E-value=0.0009 Score=42.68 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=30.6
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhCCChHHHHH
Q 005305 524 AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556 (703)
Q Consensus 524 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 556 (703)
++++++++|+++.+|..|+.+|...|++++|.+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 678899999999999999999999999999863
No 174
>PRK15331 chaperone protein SicA; Provisional
Probab=96.80 E-value=0.036 Score=49.42 Aligned_cols=86 Identities=12% Similarity=0.036 Sum_probs=74.6
Q ss_pred HHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHH
Q 005305 478 LLGREGLLDEAFALIRGAPF--KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 555 (703)
-+-..|++++|..+|.-+-. .-|..-|..|...|...++++.|...+.....++++|+..+...+.+|...|+.++|.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence 34578999999999986422 2356678888888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 005305 556 EVIRTLRR 563 (703)
Q Consensus 556 ~~~~~m~~ 563 (703)
+.|....+
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 99988764
No 175
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.036 Score=56.10 Aligned_cols=266 Identities=12% Similarity=0.009 Sum_probs=156.6
Q ss_pred HHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhccCCH
Q 005305 273 IDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH-FTFSMIIRICTRLASL 348 (703)
Q Consensus 273 i~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~ 348 (703)
.+.+-+..++.+|+..+....+ .++.-|..-...+..-|++++|+--.+.-.+. +|.. .+..-.-.++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHH
Confidence 3455566667777766655433 24445666666666677777766555444332 2221 2333333334444444
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC-----cCChhhHHHH-HHHHHhcCCHHHHHHHHH
Q 005305 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML-----CKNVISWNAL-IAGYGNHGRGEEAVELFE 422 (703)
Q Consensus 349 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~~~~~~~~l-i~~~~~~g~~~~A~~l~~ 422 (703)
..|.+.++ +...+ ....|...++.+. +|.-.+|..+ ...+...|++++|...--
T Consensus 134 i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 44444333 00000 1112222222221 1222344444 235667788888877766
Q ss_pred HHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHH-------------HHHHHHHHHhcCChHHH
Q 005305 423 QMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMH-------------YACMIELLGREGLLDEA 488 (703)
Q Consensus 423 ~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-------------~~~li~~~~~~g~~~~A 488 (703)
..++. .++. .....--.++.-.++.+.+...|++..+ +.|+... +.-=.+...+.|++.+|
T Consensus 194 ~ilkl--d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 194 DILKL--DATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHhc--ccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 65553 2222 1111111234455677888888877654 3344221 11223446688999999
Q ss_pred HHHHHh-CCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 489 FALIRG-APFKT-----TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 489 ~~~~~~-m~~~p-----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
.+.+.+ +.+.| +...|........+.|+.++|....+++++++|.-+..|..-++++...++|++|.+-+++..
T Consensus 269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~ 348 (486)
T KOG0550|consen 269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAM 348 (486)
T ss_pred HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999976 44444 455666666677889999999999999999999988899999999999999999999998876
Q ss_pred hCC
Q 005305 563 RKG 565 (703)
Q Consensus 563 ~~~ 565 (703)
+..
T Consensus 349 q~~ 351 (486)
T KOG0550|consen 349 QLE 351 (486)
T ss_pred hhc
Confidence 543
No 176
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.77 E-value=0.021 Score=59.86 Aligned_cols=80 Identities=9% Similarity=-0.065 Sum_probs=42.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC
Q 005305 200 NMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC 279 (703)
Q Consensus 200 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 279 (703)
.++|+.|.+.|..+++++++..=..-|+-||.+||+.++..+.+.|++..|.++...|...+...+..++.--+..+.+.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 35555555555555555555555555566666666666666666666666655555555554444444433333333333
No 177
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.71 E-value=0.021 Score=46.99 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHccC--------CHHHHHHHHHHhHhhcCCCCchHH
Q 005305 401 WNALIAGYGNHGRGEEAVELFEQMLLNGM-RPNHVTFLAVLSACSRSG--------LSERGWEIFQSMSRDHKIKPRAMH 471 (703)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~ 471 (703)
-...|..+...|++...-.+|+.+++.|+ -|...+|+.+|.+..+.. .+-+.+.+++.|.. .+++|+.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~-~~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILS-NKLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH-hccCCcHHH
Confidence 34456666677999999999999999999 899999999998876643 24467788888887 689999999
Q ss_pred HHHHHHHHHh
Q 005305 472 YACMIELLGR 481 (703)
Q Consensus 472 ~~~li~~~~~ 481 (703)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9998887754
No 178
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.71 E-value=0.0038 Score=49.83 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=46.8
Q ss_pred cCCHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 005305 411 HGRGEEAVELFEQMLLNGMR-PNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 489 (703)
+|++++|+.+|+++.+.... |+...+..+..++.+.|++++|..+++.. + .+. .+......+...|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~-~-~~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL-K-LDP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH-T-HHH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh-C-CCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 56777777777777765321 23444445667777777777777777662 2 111 12233334466667777777777
Q ss_pred HHHHh
Q 005305 490 ALIRG 494 (703)
Q Consensus 490 ~~~~~ 494 (703)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77653
No 179
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.037 Score=54.14 Aligned_cols=102 Identities=14% Similarity=0.058 Sum_probs=84.8
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHc---CChhHHHHHHHHHhCCCCCCcchHH
Q 005305 465 IKPRAMHYACMIELLGREGLLDEAFALIRGA-PFK-TTKNMWAALLTACRVN---GNLELGKFAAEKLYGMEPEKLSNYV 539 (703)
Q Consensus 465 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 539 (703)
-+-|.+.|--|...|.+.|+.+.|..-|.+. ... +++..+..+..++... ....++..++++++..+|+|+.+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3567889999999999999999999998874 333 4566677777666433 3567889999999999999999999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 540 VLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 540 ~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
.|+-.+...|++.+|...++.|.+...
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999999999999999999997654
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.64 E-value=0.19 Score=50.68 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=62.7
Q ss_pred HHHHhhHHhc-CCHHHHHHHhhhcCc-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CcCH-H
Q 005305 371 SALVDFYSKW-GRIEDARHVFDKMLC-----KN----VISWNALIAGYGNHGRGEEAVELFEQMLLNGM-----RPNH-V 434 (703)
Q Consensus 371 ~~Li~~y~k~-g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~-~ 434 (703)
..+..+|-+. |++++|.+.|++..+ .. ...+..+...+.+.|++++|+++|++....-. +++. .
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 3344455555 666666666665521 11 12344556667777777777777777665322 1222 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhh-cCCCCc--hHHHHHHHHHHHh--cCChHHHHHHHHhCC
Q 005305 435 TFLAVLSACSRSGLSERGWEIFQSMSRD-HKIKPR--AMHYACMIELLGR--EGLLDEAFALIRGAP 496 (703)
Q Consensus 435 t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~m~ 496 (703)
.|...+-.+...|+...|.+.|+..... .++..+ ......|++++-. ...+++|..-|+++.
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2233333455567777777777766431 122222 2334445555542 245556666666653
No 181
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.64 E-value=0.24 Score=44.72 Aligned_cols=130 Identities=11% Similarity=0.046 Sum_probs=98.5
Q ss_pred CCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-----CCCHH
Q 005305 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-----KTTKN 502 (703)
Q Consensus 429 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-----~p~~~ 502 (703)
..|+...-..+..+....|+..+|...|++... .-+.-|....-.+..+....++..+|...++.+ .. .||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 467776677788888888999999888888876 345556667777777777888888888888774 22 3443
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
-..+...+...|..+.|+..++.++..-|+ +..-.....++.++|+.++|..-+....
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 345567788899999999999999988887 6666777888999999988876555443
No 182
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.64 E-value=0.19 Score=49.18 Aligned_cols=55 Identities=11% Similarity=0.024 Sum_probs=35.5
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCCccc------HHHHHHHHHHcCCcHHHHHHHHHHHHC
Q 005305 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVG------WNTIIAGYALHGYSEEALDLYYEMRDS 326 (703)
Q Consensus 272 Li~~y~~~g~~~~A~~~f~~m~~~~~~~------~~~li~~~~~~g~~~~A~~l~~~m~~~ 326 (703)
....+.+.|++++|.+.|+.+....+.+ .-.+..+|.+.+++++|...|++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444556778888888887776532221 123455667788888888888877765
No 183
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.63 E-value=0.0052 Score=46.19 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=43.8
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCc
Q 005305 475 MIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535 (703)
Q Consensus 475 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 535 (703)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 345677788888888888774 3345 445777777888888888888888888888888763
No 184
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.61 E-value=0.048 Score=50.78 Aligned_cols=105 Identities=27% Similarity=0.333 Sum_probs=72.3
Q ss_pred CCCHhhHHHHHHHHhc-----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHH
Q 005305 329 KMDHFTFSMIIRICTR-----LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNA 403 (703)
Q Consensus 329 ~pd~~t~~~ll~a~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~ 403 (703)
..|..+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=| |.+- .+| .+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------p~n--~fQ~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------PRN--FFQA 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------ccc--HHHH
Confidence 4466666666666643 45666677777888888999999999999987665 2221 111 1111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCC
Q 005305 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL 448 (703)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 448 (703)
+..-| ..+.+-|++++++|...|+.||..|+..++..+.+.+.
T Consensus 111 ~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11112 23456799999999999999999999999999887764
No 185
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.61 E-value=1.1 Score=46.39 Aligned_cols=423 Identities=14% Similarity=0.056 Sum_probs=216.7
Q ss_pred hhhhhhccccccCCCCcccchhhcccccCccCCCCCcccHHHHHH---HHhcCChhHHHHHHHHHHHc--CCCCC-----
Q 005305 59 CCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK---LVLNKRYREALELFEILEFE--GGFDV----- 128 (703)
Q Consensus 59 ~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~---~~~~g~~~~A~~l~~~m~~~--~~~~p----- 128 (703)
-...+.++++|.. .+++.- .....+..+..|... |-.+.. .-+.+.+.+|++.|...... +.-+|
T Consensus 46 Evl~grilnAffl-~nld~M---e~~l~~l~~~~~~s~-~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~n 120 (549)
T PF07079_consen 46 EVLGGRILNAFFL-NNLDLM---EKQLMELRQQFGKSA-YLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTN 120 (549)
T ss_pred HHHhhHHHHHHHH-hhHHHH---HHHHHHHHHhcCCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhh
Confidence 4566778888887 666666 455555555444333 444443 56788899999988877654 31111
Q ss_pred ------ChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCC----CCcchHHHHHHHHHhCCChHHHHHHHccCCCCCccc
Q 005305 129 ------GSSTYDALISACIGLRSIREVKRVFSYMLSTGFE----PDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVS 198 (703)
Q Consensus 129 ------~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~----~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~ 198 (703)
|-.-=+..+.++...|++.+|+.++..++..=++ -+..+||.++-++++.=-++. -+.+...=..-
T Consensus 121 i~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl----~e~~s~dl~pd 196 (549)
T PF07079_consen 121 IQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLEL----KESMSSDLYPD 196 (549)
T ss_pred HHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHH----HHhcccccChH
Confidence 1111234456677889999999999888775443 678889988888876422221 11222211223
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcC--CChHHHHHHHHHHHHhCCCCc-HHHHHHHHHH
Q 005305 199 CNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL--ELISVGKQLHSCALKMGFGDN-VFVSCALIDM 275 (703)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~--~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~ 275 (703)
|--||-.|.+.=..-++ -.-..+.|....+..++....-. ..+..-.+++..-.+.-+.|+ ..+...|+.-
T Consensus 197 yYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~ 270 (549)
T PF07079_consen 197 YYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQ 270 (549)
T ss_pred HHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHH
Confidence 55566665543211111 00011233333344444333222 122223333333333334444 2344455555
Q ss_pred HHhCCCHHHHHHHHhhcC--------CCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHH-------HHHH
Q 005305 276 YSKCGSIEDAQGVFDEMS--------EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS-------MIIR 340 (703)
Q Consensus 276 y~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-------~ll~ 340 (703)
+.+ +.+++..+-+.+. ++=+.++..++...++.++..+|.+.+.-+... .|+...-. .+-+
T Consensus 271 f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~ 346 (549)
T PF07079_consen 271 FMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQD 346 (549)
T ss_pred Hhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHH
Confidence 544 3444444433332 223446778888888888888888877766543 33332110 0111
Q ss_pred HHh-cc---CCHHHHHHHHHHHHHcCCCCchHHHHHHH---hhHHhcCC-HHHHHHHhhhcC---cCChhhHHHHH----
Q 005305 341 ICT-RL---ASLEHAKQAHAGLVRHGFGLDIVANSALV---DFYSKWGR-IEDARHVFDKML---CKNVISWNALI---- 405 (703)
Q Consensus 341 a~~-~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~Li---~~y~k~g~-~~~A~~~f~~m~---~~~~~~~~~li---- 405 (703)
..+ .- .++..-..++..+...+++.. ....-|+ .-+-+.|. -++|.++++.+. .-|...-|.+.
T Consensus 347 Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvK 425 (549)
T PF07079_consen 347 IVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVK 425 (549)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 111 11 112222333444443333221 1111122 22334444 677777777663 34444444332
Q ss_pred HHHHhc---CCHHHHHHHHHHHHHcCCCcCHH----HHHHHHHH--HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHH
Q 005305 406 AGYGNH---GRGEEAVELFEQMLLNGMRPNHV----TFLAVLSA--CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI 476 (703)
Q Consensus 406 ~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 476 (703)
..|.+. .....-+.+-+-..+.|+.|-.+ .-+.+..| ....|++.++.-+-.-+. .+.|++.+|..+.
T Consensus 426 q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlG 502 (549)
T PF07079_consen 426 QAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLG 502 (549)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHH
Confidence 123221 11233333334444567766332 22333333 345677777665544443 4778888888777
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 005305 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAA 506 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 506 (703)
-.+....+++||.+.+..+| |+..+|++
T Consensus 503 l~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 503 LCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 77778888888888888876 45555543
No 186
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.61 E-value=0.03 Score=56.32 Aligned_cols=126 Identities=14% Similarity=0.139 Sum_probs=67.1
Q ss_pred cHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhH
Q 005305 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRI-CTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377 (703)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 377 (703)
+|..++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+..++. +..+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555665556666666666666665332 1122222222222 22234555566666666654 344566666666666
Q ss_pred HhcCCHHHHHHHhhhcCcC------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 378 SKWGRIEDARHVFDKMLCK------NVISWNALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 378 ~k~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
.+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6677777777777666321 223566666666666666666666666655
No 187
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.60 E-value=0.018 Score=53.57 Aligned_cols=98 Identities=13% Similarity=0.259 Sum_probs=74.7
Q ss_pred HHHhhhc--CcCChhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHcc-------------
Q 005305 387 RHVFDKM--LCKNVISWNALIAGYGN-----HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS------------- 446 (703)
Q Consensus 387 ~~~f~~m--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 446 (703)
...|+.. ..+|-.+|..+|..|.+ .|..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 45677777777777764 366666777788888888888888888888876442
Q ss_pred ---CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCCh
Q 005305 447 ---GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485 (703)
Q Consensus 447 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 485 (703)
.+.+-|..++++|.. +|+.||.+++..+++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 234568999999988 89999999999999999877654
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.59 E-value=0.051 Score=59.39 Aligned_cols=141 Identities=14% Similarity=0.083 Sum_probs=102.5
Q ss_pred CcCChhhHHHHHHHHHhc--C---CHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHcc--------CCHHHHHHHHHHh
Q 005305 394 LCKNVISWNALIAGYGNH--G---RGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRS--------GLSERGWEIFQSM 459 (703)
Q Consensus 394 ~~~~~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m 459 (703)
...|...|...+.+.... + ...+|..+|++.++ ..||. ..+..+..++... .++..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 456888999999886542 2 37789999999998 57876 4555444433221 1223344444433
Q ss_pred HhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc
Q 005305 460 SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536 (703)
Q Consensus 460 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 536 (703)
........+...|..+.-.....|++++|...+++. ...|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 221123445577887777777789999999999984 56788889999999999999999999999999999999774
No 189
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.59 E-value=0.03 Score=58.74 Aligned_cols=119 Identities=9% Similarity=0.025 Sum_probs=69.4
Q ss_pred CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC----CCcccH
Q 005305 227 SDCGSRTFATMIRASAGLELISVGKQLHSCALKMG--FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE----KTTVGW 300 (703)
Q Consensus 227 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~ 300 (703)
...+...+..+++.+....+++.++.++-...... ...-..+..++|..|.+.|..+.+..++..=.. +|..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 33455566666666666666666666655554431 112223344666666666666666666654332 466666
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc
Q 005305 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL 345 (703)
Q Consensus 301 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 345 (703)
|.+|..+.+.|++..|.++..+|...+...++.|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666666665556666666555555443
No 190
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.48 E-value=0.045 Score=45.12 Aligned_cols=79 Identities=8% Similarity=0.041 Sum_probs=64.4
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHhccC--------CHHHHHHHHHHHHHcCCCCchHHHH
Q 005305 301 NTIIAGYALHGYSEEALDLYYEMRDSGV-KMDHFTFSMIIRICTRLA--------SLEHAKQAHAGLVRHGFGLDIVANS 371 (703)
Q Consensus 301 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 371 (703)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.++..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4456666777999999999999999999 999999999998876543 2445677888888888999999999
Q ss_pred HHHhhHHh
Q 005305 372 ALVDFYSK 379 (703)
Q Consensus 372 ~Li~~y~k 379 (703)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877665
No 191
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.40 E-value=0.076 Score=47.16 Aligned_cols=85 Identities=13% Similarity=0.057 Sum_probs=37.6
Q ss_pred HHHHhCCChhHHHHHHHHhHHcCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCH
Q 005305 204 AGMIDSGDYLEAFLLFLDLWEEFSDC-GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI 282 (703)
Q Consensus 204 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 282 (703)
.-+.+.|++++|..+|+-+..- .| +..-|-.|...|-..|++++|...+..+.... +.|+..+-.+...|.+.|+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCH
Confidence 3344445555555555444332 12 12223333333334444444444444444443 33444444445555555555
Q ss_pred HHHHHHHhh
Q 005305 283 EDAQGVFDE 291 (703)
Q Consensus 283 ~~A~~~f~~ 291 (703)
+.|++.|+.
T Consensus 120 ~~A~~aF~~ 128 (157)
T PRK15363 120 CYAIKALKA 128 (157)
T ss_pred HHHHHHHHH
Confidence 555555443
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.38 E-value=0.088 Score=44.93 Aligned_cols=91 Identities=18% Similarity=0.200 Sum_probs=66.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-chHHHHHHHHHHH
Q 005305 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP-RAMHYACMIELLG 480 (703)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 480 (703)
+..++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..+|+....++.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 455677889999999999999998876553 5677778889999999999999998877432111 2222233445677
Q ss_pred hcCChHHHHHHHHh
Q 005305 481 REGLLDEAFALIRG 494 (703)
Q Consensus 481 ~~g~~~~A~~~~~~ 494 (703)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999999887644
No 193
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.38 E-value=2 Score=46.78 Aligned_cols=199 Identities=13% Similarity=0.134 Sum_probs=106.5
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHHh-CCC--------CCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcc
Q 005305 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLST-GFE--------PDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLV 197 (703)
Q Consensus 127 ~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~-g~~--------~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~ 197 (703)
.|....|..+.......-+++.|++.|-..... |+. .+.....+=+.+| .|++++|++++-+|..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 467777777776666555666666665443221 110 0011111112222 4788888888888877775
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCC----hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 005305 198 SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG----SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALI 273 (703)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 273 (703)
-|..+.+.|++-...++++. .|-..| ...|..+...++....+++|.+++..--. ...++
T Consensus 766 ----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ 829 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQI 829 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHH
Confidence 35566677777666665532 111111 23566666666666666666666543211 11244
Q ss_pred HHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 005305 274 DMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353 (703)
Q Consensus 274 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 353 (703)
++|.+..++++-+.+-..+++ |....-.|...+...|.-++|.+.|-+- + .| ...+..|..++++.+|.+
T Consensus 830 ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHHHHHHHHHHHHH
Confidence 555555555555555555554 3334555666677777777776665332 1 11 123455666666655554
Q ss_pred H
Q 005305 354 A 354 (703)
Q Consensus 354 ~ 354 (703)
+
T Consensus 900 l 900 (1189)
T KOG2041|consen 900 L 900 (1189)
T ss_pred H
Confidence 4
No 194
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.38 E-value=1.4 Score=44.79 Aligned_cols=285 Identities=14% Similarity=0.091 Sum_probs=168.5
Q ss_pred cHHHHHHHHHh--CCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHh--cCCChHHHHHHHHHHHHhCCCCcHHH--HHH
Q 005305 198 SCNMIIAGMID--SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA--GLELISVGKQLHSCALKMGFGDNVFV--SCA 271 (703)
Q Consensus 198 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 271 (703)
.|.+|-.|+.- .|+-..|.++-.+-.+. +..|...+..++.+-. -.|+++.+++-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 34445445443 35555555554443211 3446666666665543 347788888888777642 22221 112
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCC---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCC-CCCCHh--hHHHHHHHHhc-
Q 005305 272 LIDMYSKCGSIEDAQGVFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEMRDSG-VKMDHF--TFSMIIRICTR- 344 (703)
Q Consensus 272 Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~--t~~~ll~a~~~- 344 (703)
|.----+.|..+.|...-++.-.. -.-.|.+.+...++.|+++.|+++++.-++.. +.+|.. .-..++.+-+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 222223567777777766655432 23467888888999999999999988765532 344433 22333333221
Q ss_pred --cCCHHHHHHHHHHHHHcCCCCchHH-HHHHHhhHHhcCCHHHHHHHhhhcC--cCChhhHHHHHHHHHhcCCHHHHHH
Q 005305 345 --LASLEHAKQAHAGLVRHGFGLDIVA-NSALVDFYSKWGRIEDARHVFDKML--CKNVISWNALIAGYGNHGRGEEAVE 419 (703)
Q Consensus 345 --~~~~~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~ 419 (703)
..+...++..-.+..|. .||..- .-.-...|.+.|++.++-.+++.+= +|.+..|.. -.+++.|+ .++.
T Consensus 240 ~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~gd--ta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSGD--TALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCCC--cHHH
Confidence 23455666655555553 343221 2223467888999999999998883 344443332 22344444 4444
Q ss_pred HHHHHHH-cCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHh-cCChHHHHHHHHhC
Q 005305 420 LFEQMLL-NGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR-EGLLDEAFALIRGA 495 (703)
Q Consensus 420 l~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m 495 (703)
-+++... ..++||. .....+..+-...|++..|+.--+... ...|....|..|.+.-.- .|+-.++...+.+.
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 4444432 2367766 667777788888888888877666554 367888888888887654 48888888888764
No 195
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.30 E-value=0.017 Score=60.04 Aligned_cols=63 Identities=17% Similarity=0.054 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch---HHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 501 KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN---YVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 501 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
...|..+..++...|++++|...++++++++|++..+ |..++.+|...|+.++|.+.+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666665432 56666666666666666666655554
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.28 E-value=0.081 Score=45.16 Aligned_cols=90 Identities=17% Similarity=-0.004 Sum_probs=48.3
Q ss_pred HHHHHhCCChhHHHHHHHHhHHcCCCCC--hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC---cHHHHHHHHHHHH
Q 005305 203 IAGMIDSGDYLEAFLLFLDLWEEFSDCG--SRTFATMIRASAGLELISVGKQLHSCALKMGFGD---NVFVSCALIDMYS 277 (703)
Q Consensus 203 i~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~ 277 (703)
..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++...... +. +..+...+...+.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHH
Confidence 3455566777777777777766665543 2244455556666666666666666655432 11 2222222333444
Q ss_pred hCCCHHHHHHHHhhcC
Q 005305 278 KCGSIEDAQGVFDEMS 293 (703)
Q Consensus 278 ~~g~~~~A~~~f~~m~ 293 (703)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555554433
No 197
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.26 E-value=0.63 Score=42.17 Aligned_cols=126 Identities=10% Similarity=0.030 Sum_probs=77.0
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc-----CChhhHHH
Q 005305 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-----KNVISWNA 403 (703)
Q Consensus 329 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~~~~~~~~ 403 (703)
.|+...-..+..+....|+..+|...|++...--+.-|..+.-.+.++....++...|...++.+.+ +.+..--.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555666777777777777777777777655566777777777777777777777777776632 12233344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHH
Q 005305 404 LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIF 456 (703)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 456 (703)
+...|...|.+.+|..-|+..... -|+...-.....-+.+.|..+++..-+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 556677777777777777777764 444322222222334555555444333
No 198
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.24 E-value=2.9 Score=47.13 Aligned_cols=488 Identities=15% Similarity=0.096 Sum_probs=254.0
Q ss_pred cCCCCcccchhhcccccCccCCCC-CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChH
Q 005305 70 PKPNKIYTEELKESSLPDTQMKKP-SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIR 147 (703)
Q Consensus 70 ~k~~~~~~aa~~~~~f~~~~~~~p-~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~ 147 (703)
.|.|+.++| ..+++.....++ |..+..++-. |...++.++|..+|+...... |+......+..++.+.+++.
T Consensus 54 ~r~gk~~ea---~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 54 FRLGKGDEA---LKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY---PSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHhcCchhH---HHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHH
Confidence 345888888 888876654433 6667788888 999999999999999998754 77888888899999988877
Q ss_pred HHHHHHHHHHHhCCCCCcchHHHHHHHHHhCC----------ChHHHHHHHccCCCCC--cccHH---HHHHHHHhCCCh
Q 005305 148 EVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCG----------MMIDARRLFDEMPERN--LVSCN---MIIAGMIDSGDY 212 (703)
Q Consensus 148 ~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g----------~~~~A~~~f~~m~~~d--~~~~~---~li~~~~~~g~~ 212 (703)
+-.+.--++-+ .++.+.+.+-+++..+...- -+.-|.+.++.+.+.+ ..+-. .-...+...|.+
T Consensus 128 ~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~ 206 (932)
T KOG2053|consen 128 KQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKY 206 (932)
T ss_pred HHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccH
Confidence 66555555554 34666777766776665431 1334666777666544 11111 112233457889
Q ss_pred hHHHHHH-HHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHH---------------
Q 005305 213 LEAFLLF-LDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY--------------- 276 (703)
Q Consensus 213 ~~A~~~~-~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y--------------- 276 (703)
++|++++ ....+.-...+...-+--+..+...+++.+..++-.+++..|- .| |...++.+
T Consensus 207 ~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~-Dd---y~~~~~sv~klLe~~~~~~a~~~ 282 (932)
T KOG2053|consen 207 QEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN-DD---YKIYTDSVFKLLELLNKEPAEAA 282 (932)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC-cc---hHHHHHHHHHHHHhcccccchhh
Confidence 9999998 4444433333444555566777788889998898888888872 22 22222222
Q ss_pred -HhCCCHHHHHHHHhhcCC-CCcccHHHHHHHHH---HcCCcHHHHHHHHHHHHCCCCC----C---------HhhHHHH
Q 005305 277 -SKCGSIEDAQGVFDEMSE-KTTVGWNTIIAGYA---LHGYSEEALDLYYEMRDSGVKM----D---------HFTFSMI 338 (703)
Q Consensus 277 -~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p----d---------~~t~~~l 338 (703)
...+.++...+..++... +..-.|-+-+..+. .-|+.++++..|-+ .-|-+| | ......+
T Consensus 283 ~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg~kpcc~~Dl~~yl~~l~~~q~~~l 360 (932)
T KOG2053|consen 283 HSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFK--KFGDKPCCAIDLNHYLGHLNIDQLKSL 360 (932)
T ss_pred hhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHH--HhCCCcHhHhhHHHhhccCCHHHHHHH
Confidence 222333333333333222 12223444444433 45778887655533 222222 1 1111223
Q ss_pred HHHHhccC-CHHH---HHHHHHHHHH----cC----CCCch-H-HHHHHHhhHHhcCCHHHHHHHh-hhcCcCC---hhh
Q 005305 339 IRICTRLA-SLEH---AKQAHAGLVR----HG----FGLDI-V-ANSALVDFYSKWGRIEDARHVF-DKMLCKN---VIS 400 (703)
Q Consensus 339 l~a~~~~~-~~~~---a~~~~~~~~~----~g----~~~~~-~-~~~~Li~~y~k~g~~~~A~~~f-~~m~~~~---~~~ 400 (703)
+..+.... +... +.+.|-.+++ .| ++.|. . .+..++-.|.+. ++-...++ .++..-+ .-+
T Consensus 361 ~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~g--ls~~K~ll~TE~~~g~~~llLa 438 (932)
T KOG2053|consen 361 MSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKG--LSLSKDLLPTEYSFGDELLLLA 438 (932)
T ss_pred HHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcc--ccccccccccccccHHHHHHHH
Confidence 33322111 1111 1111111111 01 11110 0 011111112111 00000000 0000001 124
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 401 WNALIAGYGNHGRGE---EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 401 ~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
-|.|+..+-+.++.. +|+-+++.-... -.-|..+-..++..|+-.|-+..|.+.|..+.- ..|..|...|- +..
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdI-K~IQ~DTlgh~-~~~ 515 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDI-KNIQTDTLGHL-IFR 515 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcch-HHhhhccchHH-HHH
Confidence 567778888877744 455555554443 122445666677888888888888888888754 35655544432 234
Q ss_pred HHHhcCChHHHHHHHHhCC-C-CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC----CcchHHHHHHHHHhCCC
Q 005305 478 LLGREGLLDEAFALIRGAP-F-KTTK-NMWAALLTACRVNGNLELGKFAAEKLYGMEPE----KLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m~-~-~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~ 550 (703)
-+.-.|++..+...++... + ..+. .+-.....|| ++|.+..-.+...---.+.-. -..+-...++.....++
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 4555677777766665421 1 0010 1111222333 455555443322111111111 11223456777888899
Q ss_pred hHHHHHHHHHHHhCCCccCCceeEEEEC
Q 005305 551 LKEAAEVIRTLRRKGLRMLPACSWIEVK 578 (703)
Q Consensus 551 ~~~A~~~~~~m~~~~~~~~~~~s~~~~~ 578 (703)
.++-.+.+..|.-.. .+....|.++.
T Consensus 595 ~~q~~~~~~~~~l~~--~e~~I~w~~L~ 620 (932)
T KOG2053|consen 595 GTQLLKLLESMKLPP--SEDRIQWVSLS 620 (932)
T ss_pred HHHHHHHHhccccCc--chhhccccccc
Confidence 998888888876111 12234676554
No 199
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.23 E-value=0.37 Score=49.63 Aligned_cols=160 Identities=17% Similarity=0.101 Sum_probs=98.0
Q ss_pred HHHhhHHhcCCHHHHHHHhhhcCcC---Chh----hHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005305 372 ALVDFYSKWGRIEDARHVFDKMLCK---NVI----SWNALIAGYGN---HGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441 (703)
Q Consensus 372 ~Li~~y~k~g~~~~A~~~f~~m~~~---~~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 441 (703)
.|+-.|....+++...++.+.+... ++. .--...-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577777888888888777432 111 11123334555 6888888888888666656677777766665
Q ss_pred HHHc---------cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHH----HHHHH---Hh-C---C---CC
Q 005305 442 ACSR---------SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE----AFALI---RG-A---P---FK 498 (703)
Q Consensus 442 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~---~~-m---~---~~ 498 (703)
.|-. ...+++|...|.+. +.+.|+..+--.++.++...|...+ ..++- .. . + ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 4421 22466777777655 4455665443334444444553222 22222 11 1 1 12
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC
Q 005305 499 TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534 (703)
Q Consensus 499 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 534 (703)
.|--.+.+++.++.-.|+.+.|.+++++++.+.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 344456799999999999999999999999998764
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.34 Score=46.24 Aligned_cols=169 Identities=12% Similarity=0.058 Sum_probs=110.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCC--CC--------cccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHH
Q 005305 269 SCALIDMYSKCGSIEDAQGVFDEMSE--KT--------TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMI 338 (703)
Q Consensus 269 ~~~Li~~y~~~g~~~~A~~~f~~m~~--~~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 338 (703)
+++|...|.-..-+++-...|+.=.. .. ....+.++..+...|.+.-.+.++++.++...+.++...+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45566655554445544444443222 11 223455666666778888888888888887666677777778
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcC-----CCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHh
Q 005305 339 IRICTRLASLEHAKQAHAGLVRHG-----FGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGN 410 (703)
Q Consensus 339 l~a~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 410 (703)
.+.-.+.|+.+.+...++.+.+.. ......+.......|.-.++...|...|++++. .|++.-|.=.-...-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888888899999998888776643 333334444444556667888888888888764 345555554444555
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 005305 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAV 439 (703)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 439 (703)
.|+..+|++..+.|++. .|...+-+++
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 68888999999998874 5555444433
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.4 Score=45.84 Aligned_cols=163 Identities=9% Similarity=-0.027 Sum_probs=95.4
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcC--cCChh--------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKML--CKNVI--------SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 439 (703)
+++|+..|.-..-+++-...|+.-. +..+. .-+.++..+.-.|.+.-.+.++++.++...+-+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 5666666665555555555554332 22222 3355666666677888888999999887656677778888
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHH-----HHHHHhcCChHHHHHHHHhCCC-CC-CHHHHHHHHHHHH
Q 005305 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM-----IELLGREGLLDEAFALIRGAPF-KT-TKNMWAALLTACR 512 (703)
Q Consensus 440 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~ll~a~~ 512 (703)
.+.-.+.|+.+.|..+|+...+..+ ..+....+.+ ...|.-+.++.+|...+.+++. .| |+...+.-.-...
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 8888899999999999997766322 1222222222 2334445566666666655543 11 2222232222223
Q ss_pred HcCChhHHHHHHHHHhCCCCC
Q 005305 513 VNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 513 ~~g~~~~a~~~~~~~~~~~p~ 533 (703)
-.|+...|....+.+.+..|.
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCc
Confidence 445556666666666666665
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.18 E-value=0.0085 Score=45.63 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcC-ChhHHHHHHHHHhCCCC
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRG-APFKT-TKNMWAALLTACRVNG-NLELGKFAAEKLYGMEP 532 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~p 532 (703)
+..|..+...+.+.|++++|+..|++ +...| +...|..+..++...| ++++|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45666777777777777777777766 33344 3457777777777887 68888888888877776
No 203
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.17 E-value=2.6 Score=45.96 Aligned_cols=231 Identities=16% Similarity=0.057 Sum_probs=122.4
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHccCCC-CCccc------------HHHHHHHHHhCCChhHHHHHHHHhHHcCCC
Q 005305 162 EPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE-RNLVS------------CNMIIAGMIDSGDYLEAFLLFLDLWEEFSD 228 (703)
Q Consensus 162 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~d~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 228 (703)
.|.+..|..|.......-.++.|+..|-+... +.+.. -.+=|.+ --|++++|.++|-+|-++.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 57778888887777777778888887766543 22211 0111222 23778888888777754321
Q ss_pred CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CC-c---HHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHH
Q 005305 229 CGSRTFATMIRASAGLELISVGKQLHSCALKMGF-GD-N---VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303 (703)
Q Consensus 229 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~-~---~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 303 (703)
.+...-+.||+-...+++ +.|- .. | ...++.+.+.++....+++|.+.|..-... ...
T Consensus 766 --------Aielr~klgDwfrV~qL~----r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----e~~ 828 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLI----RNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----ENQ 828 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHH----HccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----HhH
Confidence 233344455554444433 2221 11 1 234555666666555666666655543211 123
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCH
Q 005305 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383 (703)
Q Consensus 304 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 383 (703)
+.++.+..++++-..+-+ .++-|...+-.+..++.+.|.-++|.+.|-. .+.+ .+.++.+...+++
T Consensus 829 ~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHH
Confidence 334444333333332222 2344555666677778888887777665532 2221 2345556667778
Q ss_pred HHHHHHhhhcCcCChhhHHH--------------HHHHHHhcCCHHHHHHHHHHHHH
Q 005305 384 EDARHVFDKMLCKNVISWNA--------------LIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 384 ~~A~~~f~~m~~~~~~~~~~--------------li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
.+|.++-+...-|.+.+.-+ -|.-+.+.|+.-+|-+++.+|-+
T Consensus 895 ~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 895 GEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 78877776665454433211 13345556666666666666654
No 204
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.12 E-value=0.13 Score=51.86 Aligned_cols=121 Identities=17% Similarity=0.195 Sum_probs=69.2
Q ss_pred CHHHHHHHHHHHHHc---CCCcCH--HHHHHHHHHHHcc-CCHHHHHHHHHHhHhhcCCCCc----hHHHHHHHHHHHhc
Q 005305 413 RGEEAVELFEQMLLN---GMRPNH--VTFLAVLSACSRS-GLSERGWEIFQSMSRDHKIKPR----AMHYACMIELLGRE 482 (703)
Q Consensus 413 ~~~~A~~l~~~m~~~---g~~p~~--~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~ 482 (703)
++++|+..+++..+. .-.|+. ..+..+...|... |++++|.+.|+...+-+..... ...+..+...+.+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 555555555544331 112222 3444555567777 8888888888877653322222 34556677888899
Q ss_pred CChHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 483 GLLDEAFALIRGAP---F-----KTTKN-MWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 483 g~~~~A~~~~~~m~---~-----~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
|++++|.++|++.. . +.+.. .+...+-.+...||...|...+++..+.+|.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 99999999987642 1 11111 2222333455678888888888888888875
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.10 E-value=0.52 Score=50.59 Aligned_cols=232 Identities=17% Similarity=0.151 Sum_probs=116.5
Q ss_pred cHHHHHH-HHhcCChhHHHHH---------HHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHH--HHHHHHHhCCCCC
Q 005305 97 ICSQIEK-LVLNKRYREALEL---------FEILEFEGGFDVGSSTYDALISACIGLRSIREVKR--VFSYMLSTGFEPD 164 (703)
Q Consensus 97 ~~~~li~-~~~~g~~~~A~~l---------~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~--l~~~~~~~g~~~~ 164 (703)
.+.+-+- |...|.+++|..+ ++.+... ..+.--++..-++|.+.++..--+- -++.+.++|-.|+
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~---ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~ 634 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME---ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN 634 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHH---HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch
Confidence 3444555 7777877777653 1111111 1233345555566666666543332 2345566675566
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcC
Q 005305 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244 (703)
Q Consensus 165 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 244 (703)
... +.+.++-.|.+.+|.++|. ++|.-..|+++|.+|+-- -..+-+...
T Consensus 635 ~iL---lA~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRMF----------D~aQE~~~~ 683 (1081)
T KOG1538|consen 635 DLL---LADVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRMF----------DYAQEFLGS 683 (1081)
T ss_pred HHH---HHHHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHHH----------HHHHHHhhc
Confidence 543 4455666788999988885 456666777777766421 112233334
Q ss_pred CChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005305 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324 (703)
Q Consensus 245 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 324 (703)
|+-++-+.+.+.-... ..++.--.+-..++...|+.++|..+.- .+|-.+-+.++-+++-
T Consensus 684 g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~------------------d~gW~d~lidI~rkld 743 (1081)
T KOG1538|consen 684 GDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICG------------------DHGWVDMLIDIARKLD 743 (1081)
T ss_pred CChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhh------------------cccHHHHHHHHHhhcc
Confidence 4444433332211110 0111111123344455566666554432 2222233333333322
Q ss_pred HCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc
Q 005305 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC 395 (703)
Q Consensus 325 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 395 (703)
. .+..++..+..-+-+...+..|.++|..+-. ..+++++....+++++|..+-++.++
T Consensus 744 ~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 744 K----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred h----hhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 1 1233344444444455556666666665532 23567777777888888877777764
No 206
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.91 E-value=2.6 Score=43.70 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=67.2
Q ss_pred cccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 005305 82 ESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG 160 (703)
Q Consensus 82 ~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g 160 (703)
.++-+++.+.+.|..+|-.+|. +..++..++..+++++|... ++-=...|..-+++-...++++..+.+|.+.++..
T Consensus 29 lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 29 LRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 4444555554447889999999 99999999999999999764 34445667777777777789999999999998765
Q ss_pred CCCCcchHHHHHHHHHh
Q 005305 161 FEPDLYMRNRVLLMHVR 177 (703)
Q Consensus 161 ~~~~~~~~~~Li~~y~~ 177 (703)
+. ...|..-++---+
T Consensus 107 l~--ldLW~lYl~YIRr 121 (660)
T COG5107 107 LN--LDLWMLYLEYIRR 121 (660)
T ss_pred cc--HhHHHHHHHHHHh
Confidence 44 5556555544333
No 207
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.91 E-value=0.032 Score=42.22 Aligned_cols=48 Identities=15% Similarity=0.137 Sum_probs=21.2
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
.|++++|.++|+.+... .+-+...+..++..|.+.|++++|.++++++
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444444444431 1223344444445555555555555555443
No 208
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.87 E-value=3.8 Score=45.31 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=85.3
Q ss_pred CcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 005305 430 RPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509 (703)
Q Consensus 430 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 509 (703)
.-...|.+-.+.-+...|+..+|.++-... .+ ||...|..-+.+++..+++++-+++-+++. .+.-|.-...
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----ki-pdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe 752 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KI-PDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVE 752 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhc----CC-cchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHH
Confidence 344455666677778888888888775544 33 788888888899999999999888877764 2455666788
Q ss_pred HHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 510 ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 510 a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
+|.+.|+.++|...+-+.-+ +.-.+.+|.+.|++.+|.++--+
T Consensus 753 ~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999998887665432 22577889999999998886533
No 209
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.86 E-value=3.8 Score=45.26 Aligned_cols=103 Identities=15% Similarity=0.180 Sum_probs=68.1
Q ss_pred HhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHH
Q 005305 374 VDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453 (703)
Q Consensus 374 i~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 453 (703)
+.-+...|+..+|.++-.+..-||-..|-.=+.+++..+++++-+++-+.+.. +.-|.-...+|.+.|+.++|.
T Consensus 691 v~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~ 764 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAK 764 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHh
Confidence 33445567777788777777777777777777777777777766655554431 344555667788888888887
Q ss_pred HHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 005305 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492 (703)
Q Consensus 454 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 492 (703)
.++.+.. |.. -.+.+|.++|++.+|.++-
T Consensus 765 KYiprv~---~l~-------ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 765 KYIPRVG---GLQ-------EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhhhccC---ChH-------HHHHHHHHhccHHHHHHHH
Confidence 7765442 111 4567777788877777654
No 210
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.85 E-value=0.012 Score=40.13 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHH
Q 005305 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543 (703)
Q Consensus 502 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 543 (703)
.+|..+..++...|++++|+..++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788889999999999999999999999999888877654
No 211
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.83 E-value=2 Score=42.06 Aligned_cols=194 Identities=10% Similarity=-0.005 Sum_probs=101.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCChhhH---HHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 005305 99 SQIEKLVLNKRYREALELFEILEFEGGFDVGSSTY---DALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMH 175 (703)
Q Consensus 99 ~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~---~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y 175 (703)
..-..+.+.|++++|++.|+.+.... +-+.... -.+..++.+.+++++|...++..++.-......-+...+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 33333788999999999999998864 2222222 345577788999999999999998864221112222222222
Q ss_pred HhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 005305 176 VRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHS 255 (703)
Q Consensus 176 ~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 255 (703)
+.. ......|......+..- -......+|+..|+++++. -|++ .-..+|.+...
T Consensus 115 ~~~---~~~~~~~~~~~~~~~~~--------rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~ 168 (243)
T PRK10866 115 TNM---ALDDSALQGFFGVDRSD--------RDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLV 168 (243)
T ss_pred hhh---hcchhhhhhccCCCccc--------cCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHH
Confidence 210 01111122111111000 0001123455555555443 2222 11223333222
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC--C----cccHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005305 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK--T----TVGWNTIIAGYALHGYSEEALDLYYEMR 324 (703)
Q Consensus 256 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~--~----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 324 (703)
.+...= ..---.+...|.+.|.+..|..-|+.+.+. + ......++.+|...|..++|......+.
T Consensus 169 ~l~~~l----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 169 FLKDRL----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHH----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 221110 001124566788888888888888777642 2 2345567788888888888877765543
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.81 E-value=0.062 Score=53.12 Aligned_cols=93 Identities=14% Similarity=0.097 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC---cchHHHHH
Q 005305 471 HYACMIELLGREGLLDEAFALIRGA-PFKTTK----NMWAALLTACRVNGNLELGKFAAEKLYGMEPEK---LSNYVVLL 542 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 542 (703)
.|...+..+.+.|++++|...|+.. ...|+. ..+--+..++...|+++.|...|++++...|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666553 112221 244445566667777777777777777666654 34455556
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 005305 543 NIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 543 ~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.+|...|++++|.++++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 677777777777777777664
No 213
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.74 E-value=0.15 Score=45.60 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
....++..+...|+++.+...+++++..+|-+-..|..++.+|...|+..+|.++++++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456677788899999999999999999999999999999999999999999999998875
No 214
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=3 Score=42.82 Aligned_cols=83 Identities=14% Similarity=0.026 Sum_probs=41.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHH
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 183 (703)
+.+..++.+|+..+....... +.+..-|..=...+...++++++.--.+.-++.. +.........-..+...++..+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHH
Confidence 556667888888888887764 3333334444444455555555544333333221 1111122233344444455555
Q ss_pred HHHHHc
Q 005305 184 ARRLFD 189 (703)
Q Consensus 184 A~~~f~ 189 (703)
|.+.|+
T Consensus 136 A~~~~~ 141 (486)
T KOG0550|consen 136 AEEKLK 141 (486)
T ss_pred HHHHhh
Confidence 555554
No 215
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.34 E-value=4.2 Score=42.30 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=57.0
Q ss_pred HHHHHhCCCCC----CHHHHHHHHHH--HHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 489 FALIRGAPFKT----TKNMWAALLTA--CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 489 ~~~~~~m~~~p----~~~~~~~ll~a--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
..++++.+..| +...-+.|..| ...+|++.++.....-+.++.| ++.+|..++-.+....+++||.+++..++
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 44455555544 23344555555 3688999999998888999999 59999999999999999999999998765
No 216
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.32 E-value=5.2 Score=43.22 Aligned_cols=410 Identities=11% Similarity=0.044 Sum_probs=222.1
Q ss_pred CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChh-hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHH
Q 005305 94 SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSS-TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRV 171 (703)
Q Consensus 94 ~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~L 171 (703)
+...|+++|. --+....+.+...+..+... .|..+ -|.....-=.+.|..+.+.++|+..+. |++.++..|...
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k---yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK---YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh---CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 5567888888 55555556777777777754 24433 233333344567888888899988876 466777777776
Q ss_pred HHHHH-hCCChHHHHHHHccCCC------CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHh--
Q 005305 172 LLMHV-RCGMMIDARRLFDEMPE------RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA-- 242 (703)
Q Consensus 172 i~~y~-~~g~~~~A~~~f~~m~~------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-- 242 (703)
+.... ..|+.+.-+..|+.... ....-|...|.--..++++.....+|++.++-. ...|+....-+.
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHH
Confidence 66554 34677777777766543 345568888887777888888888888887631 111222111111
Q ss_pred -c------CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCC-CHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcH
Q 005305 243 -G------LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG-SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSE 314 (703)
Q Consensus 243 -~------~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g-~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 314 (703)
+ ....++..++-...... ..-...+ ..+.-....+....+ .+..+
T Consensus 196 l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~--------------s~~l~ 248 (577)
T KOG1258|consen 196 LNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDP--------------SKSLT 248 (577)
T ss_pred HhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCc--------------cchhh
Confidence 0 01111111111111000 0000000 001111111111111 01111
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHc-------CCCCchHHHHHHHhhHHhcCCHHHHH
Q 005305 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH-------GFGLDIVANSALVDFYSKWGRIEDAR 387 (703)
Q Consensus 315 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~Li~~y~k~g~~~~A~ 387 (703)
++.....+... .--..+-........+..++.-++. -..++..+|+..++.-.+.|+.+...
T Consensus 249 ~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~ 317 (577)
T KOG1258|consen 249 EEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVF 317 (577)
T ss_pred HHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHH
Confidence 11111111000 0000111111122222223333321 11234567888888888889999998
Q ss_pred HHhhhcCcC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcC
Q 005305 388 HVFDKMLCK---NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK 464 (703)
Q Consensus 388 ~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 464 (703)
-+|++..-| =...|--.+.-.-..|+.+-|-.++....+--++-...+-..-..-+-..|+.+.|..+++.+..++
T Consensus 318 ~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~- 396 (577)
T KOG1258|consen 318 ILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY- 396 (577)
T ss_pred HHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-
Confidence 888887543 2234544444444448877777777665553222222222222223556789999999999998743
Q ss_pred CCCch-HHHHHHHHHHHhcCChHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHHHcCChhHHHHHHHHHhCCCCCC
Q 005305 465 IKPRA-MHYACMIELLGREGLLDEAF---ALIRGA-PFKTTKNMWAALLT-----ACRVNGNLELGKFAAEKLYGMEPEK 534 (703)
Q Consensus 465 ~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~-----a~~~~g~~~~a~~~~~~~~~~~p~~ 534 (703)
|+. ..-.--+.+.-|.|..+.+. +++... +.+-+......+.. -+...++.+.|..++.++.+..|++
T Consensus 397 --pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~ 474 (577)
T KOG1258|consen 397 --PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDC 474 (577)
T ss_pred --CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc
Confidence 543 33334456677889998888 555443 22223333332222 2345688999999999999999999
Q ss_pred cchHHHHHHHHHhCCChH
Q 005305 535 LSNYVVLLNIYNSSGKLK 552 (703)
Q Consensus 535 ~~~~~~l~~~y~~~g~~~ 552 (703)
...|..+++.....+...
T Consensus 475 k~~~~~~~~~~~~~~~~~ 492 (577)
T KOG1258|consen 475 KVLYLELIRFELIQPSGR 492 (577)
T ss_pred HHHHHHHHHHHHhCCcch
Confidence 999999999987776433
No 217
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.24 E-value=1.7 Score=37.10 Aligned_cols=140 Identities=18% Similarity=0.156 Sum_probs=82.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHH
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 488 (703)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..+.++.+-+-+.+ ..+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHHH
Confidence 3456777777777777653 23344454544333334444445555555432222 235555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 005305 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567 (703)
Q Consensus 489 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 567 (703)
..-+-.+. .+..-....+++....|.-++-..+...+.+-+..+|....-++++|.+.|...++.+++++.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 55554443 234445667788889999999999999988655455889999999999999999999999999999974
No 218
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.10 E-value=0.15 Score=51.57 Aligned_cols=256 Identities=14% Similarity=0.059 Sum_probs=136.8
Q ss_pred HHHhCCChhHHHHHHHHhHHcCCC---CChhhHHHHHHHHhcCCChHHHHHHHHHHHH--h--CC-CCcHHHHHHHHHHH
Q 005305 205 GMIDSGDYLEAFLLFLDLWEEFSD---CGSRTFATMIRASAGLELISVGKQLHSCALK--M--GF-GDNVFVSCALIDMY 276 (703)
Q Consensus 205 ~~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~--g~-~~~~~~~~~Li~~y 276 (703)
-+++.|+....+.+|+...+-|.. .-+..|..+.+++.-.+++++|.++|..=+. . |- .........|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 356777777777777777776643 1123455666677777788888877653221 1 10 00111222333444
Q ss_pred HhCCCHHHHHHHHhhcC-------CC--CcccHHHHHHHHHHcCC--------------------cHHHHHHHHHH----
Q 005305 277 SKCGSIEDAQGVFDEMS-------EK--TTVGWNTIIAGYALHGY--------------------SEEALDLYYEM---- 323 (703)
Q Consensus 277 ~~~g~~~~A~~~f~~m~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m---- 323 (703)
--.|.+++|.-...+-. .+ ....+-.+...|...|+ ++.|.+.|.+=
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 44556665544322111 11 11233344555554442 12233333321
Q ss_pred HHCCCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHH----cCCC-CchHHHHHHHhhHHhcCCHHHHHHHhhhc----
Q 005305 324 RDSGVKM-DHFTFSMIIRICTRLASLEHAKQAHAGLVR----HGFG-LDIVANSALVDFYSKWGRIEDARHVFDKM---- 393 (703)
Q Consensus 324 ~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m---- 393 (703)
...|-.. --..|..+-+.|--+|+++.+...|+.-+. .|-. .....+..|.++|.-.|+++.|.+.|...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 1111100 112344444445556788888887776443 2211 12345667778888888888888877654
Q ss_pred ---CcCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cC-CCcCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 005305 394 ---LCKN--VISWNALIAGYGNHGRGEEAVELFEQMLL----NG-MRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460 (703)
Q Consensus 394 ---~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 460 (703)
..+. ..+.-+|...|.-..++++|+..+.+-+. .+ ..-....+-+|..++...|..++|..+.+.-.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2233 23556677777777778888877765332 11 11123566677788888888888777665443
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.09 E-value=0.058 Score=41.47 Aligned_cols=62 Identities=13% Similarity=0.196 Sum_probs=46.8
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchH
Q 005305 477 ELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 538 (703)
..|.+.+++++|.+.++++ ...| +...|......+...|+++.|...+++.++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4677888888888888774 3344 455677777788888888888888888888888865543
No 220
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.00 E-value=0.27 Score=42.37 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=30.0
Q ss_pred CCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 429 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
..|+..++.+++.+++..|++..|.++.+...+.++++-+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566666666666666666666666666666666665555555555554
No 221
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.99 E-value=3.1 Score=43.74 Aligned_cols=61 Identities=18% Similarity=0.142 Sum_probs=35.4
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcC--cCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKML--CKNV----ISWNALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
+...++.+..+|.+.|++++|...|++.. .|+. .+|..+..+|...|+.++|++.+++.++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666666666666666666666542 2332 2356666666666666666666666655
No 222
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.45 Score=46.77 Aligned_cols=97 Identities=13% Similarity=0.138 Sum_probs=47.2
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHH---hcCCChHHHHHHHHHHHHhCCCCcHHHHHH
Q 005305 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRAS---AGLELISVGKQLHSCALKMGFGDNVFVSCA 271 (703)
Q Consensus 195 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 271 (703)
|...|-.|...|.+.|+...|+.-|....+.- .+|...+..+..++ +......++..+++++++.. +.|+....-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHH
Confidence 55666666666666666666666666654421 11222222222222 22223444555555555543 334444444
Q ss_pred HHHHHHhCCCHHHHHHHHhhcC
Q 005305 272 LIDMYSKCGSIEDAQGVFDEMS 293 (703)
Q Consensus 272 Li~~y~~~g~~~~A~~~f~~m~ 293 (703)
|...+...|++.+|...|+.|.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHH
Confidence 4444555555555555555444
No 223
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.87 E-value=0.4 Score=47.44 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=24.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRPNH----VTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
.+.|++++|+..|+.+++. .|+. ..+..+..++...|++++|...|+.+.+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555555553 2322 2333444445555555555555555544
No 224
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.82 E-value=0.33 Score=41.87 Aligned_cols=82 Identities=20% Similarity=0.257 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHh--------------HhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC----
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSM--------------SRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA---- 495 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m--------------~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---- 495 (703)
.++..++.++++.|+++....+.+.. .......|+..+..+++.+|+..|++..|+++++..
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 44444555555555555444444332 122345677888888888888888888888877643
Q ss_pred CCCCCHHHHHHHHHHHHHcC
Q 005305 496 PFKTTKNMWAALLTACRVNG 515 (703)
Q Consensus 496 ~~~p~~~~~~~ll~a~~~~g 515 (703)
+++-+...|..|+.=+...-
T Consensus 83 ~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 34445677887777554443
No 225
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.72 E-value=1.3 Score=42.19 Aligned_cols=52 Identities=19% Similarity=0.247 Sum_probs=27.9
Q ss_pred HHHhCCCHHHHHHHHhhcCCC--C----cccHHHHHHHHHHcCCcHHHHHHHHHHHHC
Q 005305 275 MYSKCGSIEDAQGVFDEMSEK--T----TVGWNTIIAGYALHGYSEEALDLYYEMRDS 326 (703)
Q Consensus 275 ~y~~~g~~~~A~~~f~~m~~~--~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 326 (703)
.+...|++++|.+.|+.+... + ..+.-.++.++.+.|++++|...|++..+.
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344556666666666665431 1 113344555666666677776666666554
No 226
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.29 Score=49.95 Aligned_cols=63 Identities=8% Similarity=0.013 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 502 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
.++..|...+.+.+.+..|.+...+.++++|+|+-+..--+.+|...|.++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 456677778889999999999999999999999999999999999999999999999999853
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.53 E-value=0.28 Score=47.30 Aligned_cols=101 Identities=13% Similarity=0.175 Sum_probs=80.9
Q ss_pred HHHHHhhhcC--cCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccC----------
Q 005305 385 DARHVFDKML--CKNVISWNALIAGYGNH-----GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG---------- 447 (703)
Q Consensus 385 ~A~~~f~~m~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---------- 447 (703)
.-+..|.... ++|-.+|-+++..|..+ +..+=....++.|.+.|+.-|..+|..||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455676665 68888999999888754 456666777889999999999999999998775543
Q ss_pred ------CHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChH
Q 005305 448 ------LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486 (703)
Q Consensus 448 ------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 486 (703)
.-+=+..+++.|.. +|+.||.++-..|+++++|.|..-
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 22347889999987 899999999999999999988654
No 228
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.44 E-value=4.5 Score=38.22 Aligned_cols=196 Identities=21% Similarity=0.145 Sum_probs=123.0
Q ss_pred hHHHHHHHhhHHhcCCHHHHHHHhhhcC-----cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005305 367 IVANSALVDFYSKWGRIEDARHVFDKML-----CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441 (703)
Q Consensus 367 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 441 (703)
..........+...+.+..+...+.... ......+..+...+...+.+.++...+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 3455556666666677776666666543 22334455555566666667777777777766433321 11222222
Q ss_pred -HHHccCCHHHHHHHHHHhHhhcCC--CCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHHcC
Q 005305 442 -ACSRSGLSERGWEIFQSMSRDHKI--KPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTT--KNMWAALLTACRVNG 515 (703)
Q Consensus 442 -a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~a~~~~g 515 (703)
++...|+++.+...+..... ..- ......+......+...++.++|...+.+. ...|+ ...+..+...+...+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (291)
T COG0457 138 GALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence 56777788888887777743 111 122333444444466677888888777763 22333 556777777788888
Q ss_pred ChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 516 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+.+.+...+.......|.....+..+...+...|.++++...+......
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888875556667777777777788888887776643
No 229
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.32 E-value=0.055 Score=42.26 Aligned_cols=59 Identities=20% Similarity=0.183 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhCC----C---CCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 504 WAALLTACRVNGNLELGKFAAEKLYGM----E---PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 504 ~~~ll~a~~~~g~~~~a~~~~~~~~~~----~---p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
++.+...+...|++++|+..+++++++ . |.-..++..++.+|...|++++|.+.+++..
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444445555444444444321 1 1124568889999999999999999888764
No 230
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=2.9 Score=41.15 Aligned_cols=122 Identities=11% Similarity=0.082 Sum_probs=83.9
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHHcCChh
Q 005305 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAA---LLTACRVNGNLE 518 (703)
Q Consensus 442 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~---ll~a~~~~g~~~ 518 (703)
.....|+..++...|+..... .+-+...--.|+..|...|+.++|..++..+|.+-...-|.. -+....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 345677888888888877662 223345556778888889999999999988876443333333 223333333333
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 519 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
+... ++.-+..+|+|...-..|+..|...|+.++|.+.+=.+.+++.
T Consensus 221 ~~~~-l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 221 EIQD-LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred CHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 3322 3344567899999999999999999999999998887776543
No 231
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=93.98 E-value=0.43 Score=48.46 Aligned_cols=252 Identities=12% Similarity=0.014 Sum_probs=125.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCCh----hhHHHHHHHHhccCChHHHHHHHHHHHH--h--CCC-CCcchHHHHHHH
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGS----STYDALISACIGLRSIREVKRVFSYMLS--T--GFE-PDLYMRNRVLLM 174 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~l~~~~~~--~--g~~-~~~~~~~~Li~~ 174 (703)
+++.|+.+..+.+|+...+-| ..|. .+|..|-.+|.-.+++++|.+.|..=+. . |-. ........|-+.
T Consensus 27 Lck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 899999999999999999987 3343 4566677778888899999988764321 1 100 011111222233
Q ss_pred HHhCCChHHHHHHHcc-C------CCC--CcccHHHHHHHHHhCCC--------------------hhHHHHHHHHhHH-
Q 005305 175 HVRCGMMIDARRLFDE-M------PER--NLVSCNMIIAGMIDSGD--------------------YLEAFLLFLDLWE- 224 (703)
Q Consensus 175 y~~~g~~~~A~~~f~~-m------~~~--d~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~- 224 (703)
+--.|.+++|...-.. + -.+ ....+-.+...|...|+ ++.|.++|.+-++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 3334566665432211 1 000 11122234444543332 2233444433211
Q ss_pred ---cCCC-CChhhHHHHHHHHhcCCChHHHHHHHHHHHH----hCC-CCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC--
Q 005305 225 ---EFSD-CGSRTFATMIRASAGLELISVGKQLHSCALK----MGF-GDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-- 293 (703)
Q Consensus 225 ---~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~g~-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~-- 293 (703)
.|-. .-...|..+.+.+--.|+++.+...|..-+. .|- ......+..|.+.+.-.|+++.|.+.|....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1100 0112344445555556777877777664332 221 1123455666777777777777777665421
Q ss_pred -----CCC--cccHHHHHHHHHHcCCcHHHHHHHHHHHH----CC-CCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 005305 294 -----EKT--TVGWNTIIAGYALHGYSEEALDLYYEMRD----SG-VKMDHFTFSMIIRICTRLASLEHAKQAHAG 357 (703)
Q Consensus 294 -----~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 357 (703)
++. ..+.-+|...|.-..++++|+.++.+-.. .+ ..-....+-++-.++...|.-++|..+...
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 222 22344455555555556666655544221 00 111223444455555555555555444333
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.87 E-value=2.2 Score=37.67 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=21.0
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHh
Q 005305 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379 (703)
Q Consensus 337 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k 379 (703)
.++..+...+.......+++.+++.+. .+....|.++.+|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 444445444555555555555555442 344455555555544
No 233
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.84 E-value=6.1 Score=37.47 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=34.0
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 005305 303 IIAGYALHGYSEEALDLYYEMRDSGVK--MDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361 (703)
Q Consensus 303 li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 361 (703)
....+.+.|++++|.+.|+++...-.. --....-.+..++-+.++++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344566778888888888888764211 11123334555666667777777777666664
No 234
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.84 E-value=0.14 Score=39.87 Aligned_cols=61 Identities=28% Similarity=0.351 Sum_probs=30.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CcC-HHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQMLLN----GM-RPN-HVTFLAVLSACSRSGLSERGWEIFQSMS 460 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 460 (703)
+++.+...|...|++++|+..|++..+. |- .|+ ..++..+...+...|++++|.++++...
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555444421 11 122 2455555566666666666666665544
No 235
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.75 E-value=9.1 Score=44.78 Aligned_cols=51 Identities=10% Similarity=-0.072 Sum_probs=23.4
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHH--HHHHHHHHHcCChhHHHHHHHHH
Q 005305 477 ELLGREGLLDEAFALIRGAPFKTTKNMW--AALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~--~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
.+|-.+|+|.+|+.+-.++....|...- ..|.+-+...++.-+|-.+..+.
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 3444555555555555554433333221 34444555555544444444433
No 236
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.40 E-value=0.7 Score=39.21 Aligned_cols=89 Identities=19% Similarity=0.170 Sum_probs=70.4
Q ss_pred HHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC----cchHHHHHHHHHhCCCh
Q 005305 478 LLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK----LSNYVVLLNIYNSSGKL 551 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~y~~~g~~ 551 (703)
+++..|+++.|++.|.+. .. +.....|+.-..+++-.|+.++|..-+.+++++..+. ...|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 467788899998888763 22 2356788888899999999999999999888766432 23578888899999999
Q ss_pred HHHHHHHHHHHhCCC
Q 005305 552 KEAAEVIRTLRRKGL 566 (703)
Q Consensus 552 ~~A~~~~~~m~~~~~ 566 (703)
+.|..-|...-+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999988877764
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.30 E-value=2.4 Score=45.36 Aligned_cols=158 Identities=10% Similarity=0.031 Sum_probs=102.1
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHH
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMID 183 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 183 (703)
..-+++++++.+..+.-.-.+.++ ..-.+.++..+-+.|..+.|.++-.. + ..-.+...++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHH
Confidence 567888998877765221111022 44578888888889988888876543 2 234577789999999
Q ss_pred HHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 005305 184 ARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFG 263 (703)
Q Consensus 184 A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 263 (703)
|.++-++.. +...|..|.+...++|+++-|.+.|.+... |..++-.+...|+.+.-.++.......| .
T Consensus 337 A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~ 404 (443)
T PF04053_consen 337 ALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D 404 (443)
T ss_dssp HHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C
Confidence 999998776 666999999999999999999999987642 5566666777788877777777776665 1
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 005305 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEM 292 (703)
Q Consensus 264 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m 292 (703)
+|.-..++.-.|++++..+++.+.
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 233333444456666666666543
No 238
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.26 E-value=17 Score=40.71 Aligned_cols=75 Identities=8% Similarity=-0.019 Sum_probs=43.4
Q ss_pred chHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhc
Q 005305 166 YMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243 (703)
Q Consensus 166 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 243 (703)
.++...|+.+.-.|++++|-...-.|...+..-|.--+.-+...++......+ +.......+...|-.+|..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 45666777777777777777777777766777777666666666654433222 2111122334445555555544
No 239
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.24 E-value=0.92 Score=40.42 Aligned_cols=68 Identities=18% Similarity=0.311 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhH----hhcCCCCchHH
Q 005305 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMS----RDHKIKPRAMH 471 (703)
Q Consensus 402 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 471 (703)
..++..+...|++++|+.+.+.+... .| |...+..++.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 33444555556666666666665553 23 34555556666666666666665555442 23466665544
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.15 E-value=15 Score=39.91 Aligned_cols=159 Identities=13% Similarity=0.075 Sum_probs=96.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHHcC-CCCCh-----hhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCcHHHH
Q 005305 200 NMIIAGMIDSGDYLEAFLLFLDLWEEF-SDCGS-----RTFATMIRASAG----LELISVGKQLHSCALKMGFGDNVFVS 269 (703)
Q Consensus 200 ~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~ 269 (703)
..++....-.|+-+.+++++.+-.+.+ +.-.- -+|..++..+.. ..+.+.+.+++..+.+.= |......
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-P~s~lfl 270 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-PNSALFL 270 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 334555556677777777777654422 22111 123333333332 456778888888887752 3333333
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCC-------CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 005305 270 CALIDMYSKCGSIEDAQGVFDEMSEK-------TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342 (703)
Q Consensus 270 ~~Li~~y~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 342 (703)
---...+...|++++|.+.|++.... ....+--+.-.+.-..++++|.+.|..+.+.. .....+|.-+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 34456677789999999999875431 11223334445677889999999999998763 44555666666555
Q ss_pred -hccCCH-------HHHHHHHHHHHH
Q 005305 343 -TRLASL-------EHAKQAHAGLVR 360 (703)
Q Consensus 343 -~~~~~~-------~~a~~~~~~~~~ 360 (703)
...++. ++|..++..+..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 345555 677777776644
No 241
>PRK11906 transcriptional regulator; Provisional
Probab=92.96 E-value=6.3 Score=41.61 Aligned_cols=157 Identities=13% Similarity=0.165 Sum_probs=86.3
Q ss_pred hhH--HHHHHHHHhc-----CCHHHHHHHHHHHHH-cCCCcCHH-HHHHHHHHHHc---------cCCHHHHHHHHHHhH
Q 005305 399 ISW--NALIAGYGNH-----GRGEEAVELFEQMLL-NGMRPNHV-TFLAVLSACSR---------SGLSERGWEIFQSMS 460 (703)
Q Consensus 399 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 460 (703)
..| ..++.|.... ...+.|+.+|.+... +.+.|+.. .|..+..++.. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554441 134678888888872 23566653 33332222111 123445555555555
Q ss_pred hhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch-
Q 005305 461 RDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTTK-NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN- 537 (703)
Q Consensus 461 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~- 537 (703)
+ --+-|+.....+..+++-.|+++.|...|++. ...||. .+|......+...|+.++|.+..++.++++|....+
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 4 12234555555556666667777777777764 335553 355555556667777777777777777777764332
Q ss_pred -HHHHHHHHHhCCChHHHHHHH
Q 005305 538 -YVVLLNIYNSSGKLKEAAEVI 558 (703)
Q Consensus 538 -~~~l~~~y~~~g~~~~A~~~~ 558 (703)
.-..+++|+.. .+++|.+++
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHH
Confidence 22334445443 355566555
No 242
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.86 E-value=4.5 Score=37.85 Aligned_cols=160 Identities=18% Similarity=0.119 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
..||-+.--+...|+++.|.+.|+...+. .|.. .++..-.-++.-.|+++-|.+=|...-+.-.-.|=...|-.++
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 45666666666777777777777776663 3322 2222222233445666666554444322111122222222222
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC-------cchHHHHHHHHHhCCC
Q 005305 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-------LSNYVVLLNIYNSSGK 550 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~y~~~g~ 550 (703)
.+.-++.+|..-+.+--.+-|..-|+..+-.+.-..-.++ .+++++..-..++ .++|.-|+.-|...|.
T Consensus 177 --E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE--TLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred --HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH--HHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 2333555554433221112344555554444432221111 1222222211121 4689999999999999
Q ss_pred hHHHHHHHHHHHhCC
Q 005305 551 LKEAAEVIRTLRRKG 565 (703)
Q Consensus 551 ~~~A~~~~~~m~~~~ 565 (703)
.++|..+|+-....+
T Consensus 253 ~~~A~~LfKLaiann 267 (297)
T COG4785 253 LDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999876443
No 243
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=3.1 Score=41.46 Aligned_cols=148 Identities=15% Similarity=0.055 Sum_probs=69.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHH----HhcCChH
Q 005305 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL----GREGLLD 486 (703)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~----~~~g~~~ 486 (703)
+|...+|-..++++.+. .+.|...+.-.=.+|...|+.+.-+..++++.. ...|+...|..+=.+| ..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 44555555555555543 223444455455556666665555555555543 2344444444333333 2556666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC----CcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 487 EAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE----KLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 487 ~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
+|++.-++. .+.| |.-.-.++.......|+.++|.+.+.+--..-.. -...|-..+-.|...+.++.|.++++.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666665542 3322 2222233333444555555555554433211111 012233444445555666666666654
Q ss_pred H
Q 005305 561 L 561 (703)
Q Consensus 561 m 561 (703)
=
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
No 244
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.48 E-value=22 Score=40.25 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=39.0
Q ss_pred HHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCchHHHHHHHhhHHh---cC
Q 005305 306 GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHG-FGLDIVANSALVDFYSK---WG 381 (703)
Q Consensus 306 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li~~y~k---~g 381 (703)
.+.-.|+++.|++.+.+ ..+...|.+.+...+.-+.-..-.+... ..+.... -.+...-+..||..|.+ ..
T Consensus 267 ~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 267 VLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 44558999999988876 3344667777777766554333222211 2222211 01111445667777775 45
Q ss_pred CHHHHHHHhhhcC
Q 005305 382 RIEDARHVFDKML 394 (703)
Q Consensus 382 ~~~~A~~~f~~m~ 394 (703)
+..+|.+.|--+.
T Consensus 342 d~~~Al~Y~~li~ 354 (613)
T PF04097_consen 342 DPREALQYLYLIC 354 (613)
T ss_dssp -HHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHH
Confidence 6777777766553
No 245
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.45 E-value=23 Score=40.11 Aligned_cols=174 Identities=11% Similarity=0.091 Sum_probs=100.2
Q ss_pred HHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHH----hccCChHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 005305 99 SQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISAC----IGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLL 173 (703)
Q Consensus 99 ~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~----~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~ 173 (703)
..-+. +.+...+.-|+.+-+. .+ .|..+...+...| .+.|++++|..-+-+.+.. ++| ..+|.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~---~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKS---QH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHh---cC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 44566 7788888888877543 32 3444444555444 3678888887665554421 122 22344
Q ss_pred HHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHH
Q 005305 174 MHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG 250 (703)
Q Consensus 174 ~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 250 (703)
-|....++.+-...++.+.+ .+...-+.|+.+|.+.++.++-.++.+.-. .|.. .+-+-..+..|.+.+-+++|
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 45444455555555555543 234445668888888888877666654432 2221 12244566666666767766
Q ss_pred HHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC
Q 005305 251 KQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK 295 (703)
Q Consensus 251 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~ 295 (703)
..+-.. .+ ....+...++ -..+++++|.+.+..++-+
T Consensus 483 ~~LA~k---~~--~he~vl~ill---e~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 483 ELLATK---FK--KHEWVLDILL---EDLHNYEEALRYISSLPIS 519 (933)
T ss_pred HHHHHH---hc--cCHHHHHHHH---HHhcCHHHHHHHHhcCCHH
Confidence 654332 22 2334444443 3468899999999998754
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.11 E-value=7.8 Score=34.05 Aligned_cols=43 Identities=5% Similarity=0.097 Sum_probs=21.3
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhC
Q 005305 135 ALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC 178 (703)
Q Consensus 135 ~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~ 178 (703)
.++..+...+........++.+++.+ ..+....|.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444445555555555555444 23444555555555543
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.05 E-value=2.6 Score=45.17 Aligned_cols=133 Identities=20% Similarity=0.257 Sum_probs=79.4
Q ss_pred HHHhcCCHHHHHHHHHH-HHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCCh
Q 005305 407 GYGNHGRGEEAVELFEQ-MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485 (703)
Q Consensus 407 ~~~~~g~~~~A~~l~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 485 (703)
....+|++++++++.+. -.-..++ ..-...++.-+.+.|..+.|+++-..- + .-.++..++|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~-----~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP--------D-----HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H--------H-----HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh--------H-----HHhHHHHhcCCH
Confidence 34456777776666541 1111111 233556666667777777777663222 1 123556678888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 486 DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 486 ~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
+.|.++.++.. +...|..|.......|+++.|+.++++. .-+..|+-+|...|+.+.-.++.+....+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88888776654 6778888888888888888888888764 346777788888888777777766666554
No 248
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.94 E-value=13 Score=38.49 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=48.0
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCCC---Cccc----HHHHHHHHHH---cCCcHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 005305 271 ALIDMYSKCGSIEDAQGVFDEMSEK---TTVG----WNTIIAGYAL---HGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340 (703)
Q Consensus 271 ~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~----~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 340 (703)
.|+-.|-...+++...++.+.+... +... --...-++-+ .|+.++|++++..+....-.+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444588888888888888888753 2111 1122234445 7888999999988666666778888776665
Q ss_pred HH
Q 005305 341 IC 342 (703)
Q Consensus 341 a~ 342 (703)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.92 E-value=5.6 Score=42.13 Aligned_cols=152 Identities=11% Similarity=0.066 Sum_probs=89.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHH
Q 005305 411 HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490 (703)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 490 (703)
..+...-+++-++..+ +.||-.+-..+| +--.+..+.++.++|++..+. + ...+..- ......|. ..+
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s-~~~~~~g~---~~e 248 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKS-QFLQHHGH---FWE 248 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchh-hhhhcccc---hhh
Confidence 3445555555556555 466664443333 333455678888888877651 1 1111000 00001111 111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC--CcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCcc
Q 005305 491 LIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE--KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRM 568 (703)
Q Consensus 491 ~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~ 568 (703)
.+.+-...|-..+-..|...+++.|+.++|.+.++++++..|. +......|++.|...+++.++..++.+-.+....+
T Consensus 249 ~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 249 AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 1211111222334456777788999999999999999987765 45577899999999999999999998876544444
Q ss_pred CCceeE
Q 005305 569 LPACSW 574 (703)
Q Consensus 569 ~~~~s~ 574 (703)
....+|
T Consensus 329 SAti~Y 334 (539)
T PF04184_consen 329 SATICY 334 (539)
T ss_pred hHHHHH
Confidence 433333
No 250
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.77 E-value=13 Score=35.70 Aligned_cols=87 Identities=15% Similarity=0.152 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC-------CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhC----CCCCCcchH
Q 005305 471 HYACMIELLGREGLLDEAFALIRGAPF-------KTTK-NMWAALLTACRVNGNLELGKFAAEKLYG----MEPEKLSNY 538 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~m~~-------~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~----~~p~~~~~~ 538 (703)
.|..+...|.|..+++||-..|.+-.. -|+. ..+.+.+-.+....++..|+..++.-.+ ..|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 344445556666666666555544221 1222 1234444455555677777777776543 235566667
Q ss_pred HHHHHHHHhCCChHHHHHHH
Q 005305 539 VVLLNIYNSSGKLKEAAEVI 558 (703)
Q Consensus 539 ~~l~~~y~~~g~~~~A~~~~ 558 (703)
..|+..| ..|+.+++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 7777776 567777777665
No 251
>PRK11906 transcriptional regulator; Provisional
Probab=91.73 E-value=1.7 Score=45.72 Aligned_cols=117 Identities=15% Similarity=0.092 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHhHhhcCCCCch-HHHHHHHHHHH---------hcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcC
Q 005305 448 LSERGWEIFQSMSRDHKIKPRA-MHYACMIELLG---------REGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNG 515 (703)
Q Consensus 448 ~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~---------~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g 515 (703)
..+.|..+|.+......+.|+- ..|..+...+. ......+|.++.++. .. .-|+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 4577888898887444566663 33333332221 122344566666553 33 346777777777778888
Q ss_pred ChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 516 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+.+.|...++++..++|+.+.+|...+....-+|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999885543
No 252
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.54 E-value=2.3 Score=43.60 Aligned_cols=95 Identities=12% Similarity=0.053 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 005305 470 MHYACMIELLGREGLLDEAFALIRGA-PFK-TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 547 (703)
..+..+.-.|.+.+.+.+|++..+.. ... +|+-..--=..||...|+++.|+..++++++++|+|-.+-.-|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35566777788999999999888763 333 4555555567788999999999999999999999998888888888777
Q ss_pred CCChHHH-HHHHHHHHhC
Q 005305 548 SGKLKEA-AEVIRTLRRK 564 (703)
Q Consensus 548 ~g~~~~A-~~~~~~m~~~ 564 (703)
..+..+. .+++..|-.+
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 7766655 7788888643
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.45 E-value=7.6 Score=39.24 Aligned_cols=45 Identities=7% Similarity=0.135 Sum_probs=21.7
Q ss_pred HHcCCcHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHhccCCHHHHH
Q 005305 308 ALHGYSEEALDLYYEMRDS--GVKMDHFTFSMIIRICTRLASLEHAK 352 (703)
Q Consensus 308 ~~~g~~~~A~~l~~~m~~~--g~~pd~~t~~~ll~a~~~~~~~~~a~ 352 (703)
.+..+.++|+..+.+-... +..---.+|..+..+.+..|.++++.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 3456666777666655432 01111234445555555555554443
No 254
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.43 E-value=13 Score=35.03 Aligned_cols=195 Identities=20% Similarity=0.151 Sum_probs=114.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc--CCh-hhHHHHHH-HHH
Q 005305 335 FSMIIRICTRLASLEHAKQAHAGLVRH-GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--KNV-ISWNALIA-GYG 409 (703)
Q Consensus 335 ~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~~~-~~~~~li~-~~~ 409 (703)
+......+...+.+..+...+...... ........+..+...+...+....+...+..... ++. ..+..... .+.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (291)
T COG0457 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY 141 (291)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH
Confidence 333333444444444444444443331 1222334444455555555556666666665533 111 22222233 677
Q ss_pred hcCCHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-chHHHHHHHHHHHhcCC
Q 005305 410 NHGRGEEAVELFEQMLLNGMRP----NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP-RAMHYACMIELLGREGL 484 (703)
Q Consensus 410 ~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 484 (703)
..|++++|...|.+... ..| ....+......+...++.+.+...+..... .... ....+..+...+...|.
T Consensus 142 ~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 142 ELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHccc
Confidence 78888888888888754 333 223344444446677788888888888766 2233 35667777788888888
Q ss_pred hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 485 LDEAFALIRGA-PFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 485 ~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
+++|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888888764 33444 345555555555667788888888888888876
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.27 E-value=2.2 Score=42.42 Aligned_cols=115 Identities=9% Similarity=-0.009 Sum_probs=92.1
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHH----HHHHHHHHHcCChh
Q 005305 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMW----AALLTACRVNGNLE 518 (703)
Q Consensus 445 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~----~~ll~a~~~~g~~~ 518 (703)
..|...+|...++.+.+ ..+.|...+.--=+++...|+.+.-...|+++ |. .||...| ..+.-+....|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45778888888898887 45677777777778899999999988888885 44 5665433 23333446789999
Q ss_pred HHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 519 LGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 519 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
+|+..+++.++++|.|.-+...+..++--.|+..|+.++..+-
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 9999999999999999888889999999999999999987654
No 256
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.25 E-value=4.3 Score=35.55 Aligned_cols=58 Identities=19% Similarity=0.251 Sum_probs=39.7
Q ss_pred HHhcCChHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc
Q 005305 479 LGREGLLDEAFALIRGA----PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536 (703)
Q Consensus 479 ~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 536 (703)
..+.|++++|.+.|+.+ |..| ....-..|+.++...+++++|...+++.+++.|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34567777777777664 2222 2234456777888888888888888888888887653
No 257
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.23 E-value=2.3 Score=41.40 Aligned_cols=95 Identities=22% Similarity=0.174 Sum_probs=60.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCch-HHHHHHH
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRP--NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA-MHYACMI 476 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li 476 (703)
.|+.-+.. .+.|++.+|...|...++....- ....+-.|..++...|++++|..+|..+.++++-.|.. +.+--|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 35555443 34566888888888877642110 11234456777777888888888887777766555543 5666666
Q ss_pred HHHHhcCChHHHHHHHHhC
Q 005305 477 ELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~m 495 (703)
....+.|+.++|...+++.
T Consensus 223 ~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 223 VSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHhcCHHHHHHHHHHH
Confidence 6677777777777766654
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.08 E-value=13 Score=40.48 Aligned_cols=161 Identities=17% Similarity=0.100 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCcCH-----HHHHHHHHHHHc----cCCHHHHHHHHHHhHhhcCCCCchH
Q 005305 401 WNALIAGYGNHGRGEEAVELFEQMLLN-GMRPNH-----VTFLAVLSACSR----SGLSERGWEIFQSMSRDHKIKPRAM 470 (703)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~-----~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~ 470 (703)
...+++...-.|+-+.+++++.+-.+. ++.-.. .+|..++..+.. ....+.+.++++.+.+.+ |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 334555566667777777777665542 122111 123333333332 456788999999887733 5554
Q ss_pred HHHHH-HHHHHhcCChHHHHHHHHhCCC------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHH-HHH
Q 005305 471 HYACM-IELLGREGLLDEAFALIRGAPF------KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYV-VLL 542 (703)
Q Consensus 471 ~~~~l-i~~~~~~g~~~~A~~~~~~m~~------~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~-~l~ 542 (703)
.|... ...+...|++++|.+.|++.-. +-....+--+...+....++++|...+.++.+...-+...|. ..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 44333 3556678999999999986421 112233344556677889999999999999986655444444 455
Q ss_pred HHHHhCCCh-------HHHHHHHHHHHhC
Q 005305 543 NIYNSSGKL-------KEAAEVIRTLRRK 564 (703)
Q Consensus 543 ~~y~~~g~~-------~~A~~~~~~m~~~ 564 (703)
-+|...|+. ++|.+++++.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 567778888 8888888887643
No 259
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.88 E-value=23 Score=37.07 Aligned_cols=129 Identities=13% Similarity=0.102 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHHHH-HHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKTTKNMW-AALLTAC 511 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~-~~ll~a~ 511 (703)
..|...+++-.+..-++.|+.+|-...+..-+.+++..+++++.-++ .|+..-|.++|+- |..-||...| .-.+.-.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34555666666777788888999888773226778888888887664 5777888888874 5444565544 4555566
Q ss_pred HHcCChhHHHHHHHHHhCCCCC--CcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 512 RVNGNLELGKFAAEKLYGMEPE--KLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
..-++-+.|+.+|+...+.-.+ -...|..+++--..-|+...|..+=+.|.+
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 6778888888888855422111 135788888888888888877777766654
No 260
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.80 E-value=1.3 Score=42.93 Aligned_cols=103 Identities=11% Similarity=0.080 Sum_probs=69.7
Q ss_pred CcccchhhcccccCccCCCCCcccHHHHHH-HHhc-----CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC---
Q 005305 74 KIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLN-----KRYREALELFEILEFEGGFDVGSSTYDALISACIGLR--- 144 (703)
Q Consensus 74 ~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~-----g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~--- 144 (703)
++... ++.|...+..+.|-.+|-+++. +... +..+---..++.|.+-| +.-|..+|+.||..+-+..
T Consensus 49 ~Lv~~---e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyG-VerDl~vYk~LlnvfPKgkfiP 124 (406)
T KOG3941|consen 49 SLVHV---EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYG-VERDLDVYKGLLNVFPKGKFIP 124 (406)
T ss_pred cccch---hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhc-chhhHHHHHHHHHhCccccccc
Confidence 44445 7777777733338888888888 6543 44555556678888888 8899999999988764422
Q ss_pred -------------ChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCC
Q 005305 145 -------------SIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM 180 (703)
Q Consensus 145 -------------~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 180 (703)
+-.-+..++++|...|+.||-.+-..|++.+.+.+-
T Consensus 125 ~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 125 QNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223456677777777777777777777777666553
No 261
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.55 E-value=10 Score=36.74 Aligned_cols=76 Identities=11% Similarity=0.061 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcc------cHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 005305 267 FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV------GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340 (703)
Q Consensus 267 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 340 (703)
..|+.-+.- .+.|++++|.+.|+.+..+.+. +--.++.++-+.+++++|+..+++....-..-...-|..-|.
T Consensus 36 ~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLK 114 (254)
T ss_pred HHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHH
Confidence 344433333 4678899999999888754222 334456677788999999998888776533222334444444
Q ss_pred HHh
Q 005305 341 ICT 343 (703)
Q Consensus 341 a~~ 343 (703)
+.+
T Consensus 115 gLs 117 (254)
T COG4105 115 GLS 117 (254)
T ss_pred HHH
Confidence 443
No 262
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.27 E-value=0.46 Score=29.79 Aligned_cols=30 Identities=30% Similarity=0.279 Sum_probs=16.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 504 WAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 504 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
|..+...+...|++++|+..++++++++|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 444555555555555555555555555554
No 263
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.21 E-value=0.34 Score=30.53 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
+|..+..++...|++++|...++++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555555666666666666666666666654
No 264
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.01 E-value=0.61 Score=29.96 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=21.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 537 NYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 537 ~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
+|..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47789999999999999999998844
No 265
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.83 E-value=14 Score=39.16 Aligned_cols=197 Identities=10% Similarity=-0.005 Sum_probs=138.9
Q ss_pred hhhhhhccccccCCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHH
Q 005305 59 CCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALI 137 (703)
Q Consensus 59 ~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll 137 (703)
..+-|+++..|.. |-+... +++++.|- .-+++. +.++-...-...+-.+|..-| .+...|..++
T Consensus 42 ~~~k~si~~lyis-g~~~~s---~~~l~d~~--------l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~ 106 (711)
T COG1747 42 AHSKNSIIALYIS-GIISLS---KQLLDDSC--------LVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELL 106 (711)
T ss_pred HHhhhhhHHHHHH-HHHHhh---hccccchH--------HHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHH
Confidence 3566788888887 777777 66666553 456778 888888888888888898866 5788899999
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCc---------ccHHHHHHHHHh
Q 005305 138 SACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNL---------VSCNMIIAGMID 208 (703)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~---------~~~~~li~~~~~ 208 (703)
+.|... ..+.-..+++++++..+ .|++...-|.+.|-+ ++.+.+...|.....+=+ ..|.-++..-
T Consensus 107 q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i-- 181 (711)
T COG1747 107 QCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI-- 181 (711)
T ss_pred HHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--
Confidence 999888 56777889999988763 455566677777776 888888888876543211 2566665421
Q ss_pred CCChhHHHHHHHHhHH-cCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Q 005305 209 SGDYLEAFLLFLDLWE-EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMY 276 (703)
Q Consensus 209 ~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 276 (703)
..+.+..+.+...... .|..--.+.+--+-.-|....++.++.+++..+++.. ..|+.....++..+
T Consensus 182 ~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 182 GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 2445555666555543 3444445566667778888999999999999888876 56666666666544
No 266
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.76 E-value=2.2 Score=41.48 Aligned_cols=58 Identities=14% Similarity=0.160 Sum_probs=32.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHhCCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 507 LLTACRVNGNLELGKFAAEKLYGMEPE---KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 507 ll~a~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
|..++...|+++.|...|....+-.|+ -+..+.-|+.+..+.|+.++|...+++..++
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 344445555555555555554443333 3455666666666777777777766666543
No 267
>PRK15331 chaperone protein SicA; Provisional
Probab=89.74 E-value=7.2 Score=35.10 Aligned_cols=84 Identities=12% Similarity=0.016 Sum_probs=37.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHH
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 488 (703)
-+.|++++|..+|+-+...+.. |..-+..|..+|-..+.+++|...|..... .. .-|+..+-.+...|...|+.++|
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCHHHH
Confidence 3455555666555555442211 222233333444445555556555554433 11 11222222334455555666666
Q ss_pred HHHHHhC
Q 005305 489 FALIRGA 495 (703)
Q Consensus 489 ~~~~~~m 495 (703)
.+-|...
T Consensus 125 ~~~f~~a 131 (165)
T PRK15331 125 RQCFELV 131 (165)
T ss_pred HHHHHHH
Confidence 5555543
No 268
>PRK09687 putative lyase; Provisional
Probab=89.71 E-value=24 Score=35.40 Aligned_cols=235 Identities=9% Similarity=-0.010 Sum_probs=99.9
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCc----HHHHHHHHHHHHCCCCCCHhhHHHH
Q 005305 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYS----EEALDLYYEMRDSGVKMDHFTFSMI 338 (703)
Q Consensus 263 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~pd~~t~~~l 338 (703)
.+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .+++..+..+... .||...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 345555555555555555433333333323334444444445555555543 3566666655332 3454444455
Q ss_pred HHHHhccCCHH--HHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcC-CHH
Q 005305 339 IRICTRLASLE--HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHG-RGE 415 (703)
Q Consensus 339 l~a~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-~~~ 415 (703)
+.++...+... ............-..++..+-...+.++++.|+.+....+..-+.++|...-...+.++.+.+ ...
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 55544433211 001111112111122344555555555555555332222233333344433333344444432 133
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 416 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
++...+..+.. .+|...-...+.+..+.|+. .+...+-...+. ++ .....+.+++..|.. +|...+.++
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 44444444443 34555555555555555552 333333333321 11 122445555555553 344444443
Q ss_pred C-CCCCHHHHHHHHHH
Q 005305 496 P-FKTTKNMWAALLTA 510 (703)
Q Consensus 496 ~-~~p~~~~~~~ll~a 510 (703)
- ..||..+-...+.+
T Consensus 261 ~~~~~d~~v~~~a~~a 276 (280)
T PRK09687 261 LYKFDDNEIITKAIDK 276 (280)
T ss_pred HhhCCChhHHHHHHHH
Confidence 2 23444443333333
No 269
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.52 E-value=13 Score=32.02 Aligned_cols=63 Identities=8% Similarity=0.168 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCC
Q 005305 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465 (703)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 465 (703)
.+..+..+..+|.-++-.+++.++.. .-+|++..+..+.+||.+.|+..++.+++..+-+ .|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe-kG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE-KGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-hch
Confidence 34445666677777777777776654 2356666677777777777777777777777665 344
No 270
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.99 E-value=27 Score=35.03 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=26.7
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCcC---ChhhHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCcCH
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLCK---NVISWNALIAGY---GNHGRGEEAVELFEQMLLNGMRPNH 433 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~~---~~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~ 433 (703)
-+....+.++.+.+.+++.+|... ....+...+..+ ... ....|...+..+....+.|..
T Consensus 127 ~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 127 KLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 344444455566666666655321 123344433333 222 233455555555544444433
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.87 E-value=24 Score=37.66 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=66.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCH--HHHHHHHHHHH
Q 005305 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF--KTTK--NMWAALLTACR 512 (703)
Q Consensus 437 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~--~~~~~ll~a~~ 512 (703)
..+..++.+.|..++|.+.|.+|.++............|+..|...+.+.++..++.+-.. -|.. ..|++.+--.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 3455666788999999999999987554333455667889999999999999999877531 2333 35666555555
Q ss_pred HcCCh---------------hHHHHHHHHHhCCCCC
Q 005305 513 VNGNL---------------ELGKFAAEKLYGMEPE 533 (703)
Q Consensus 513 ~~g~~---------------~~a~~~~~~~~~~~p~ 533 (703)
..++. ..|.++..++.+.+|.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 44442 2345677777777776
No 272
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.83 E-value=26 Score=34.71 Aligned_cols=154 Identities=19% Similarity=0.090 Sum_probs=87.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCCh
Q 005305 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485 (703)
Q Consensus 406 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 485 (703)
......|++.+|..+|+.......+ +...-..+..++...|+.+.|..++..+-.+. -.........-+..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcC
Confidence 3455677777777777777764222 23445556677777788888887777664311 011111122345556666655
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCC--CCCcchHHHHHHHHHhCCChHH-HHHHHHHH
Q 005305 486 DEAFALIRGAPFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGME--PEKLSNYVVLLNIYNSSGKLKE-AAEVIRTL 561 (703)
Q Consensus 486 ~~A~~~~~~m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~~-A~~~~~~m 561 (703)
.+..++-.+....| |...--.+...+...|+.+.|...+-.++..+ -+|...-..|+.++.-.|.-|. +.+.+++|
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 55555555554455 44444566666777777777776655555332 2344556667777766664443 33344433
No 273
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.81 E-value=47 Score=37.60 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=45.5
Q ss_pred CcccHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCCh-------HHHHHHHHHHHHhCCCCCcc
Q 005305 94 SAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSI-------REVKRVFSYMLSTGFEPDLY 166 (703)
Q Consensus 94 ~~~~~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~-------~~a~~l~~~~~~~g~~~~~~ 166 (703)
+.+.|-.+--+.|.|++++|.++....... .......|...+..+....+- +....-+....+.....|++
T Consensus 111 ~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~--~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIWALIYYCLRCGDYDEALEVANENRNQ--FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHHHHHHHHHTTT-HHHHHHHHHHTGGG--S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccHHHHHHHHhcCCHHHHHHHHHHhhhh--hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 667787666699999999999999666554 466677888999998765332 24444455555443333554
No 274
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.80 E-value=6 Score=39.92 Aligned_cols=62 Identities=15% Similarity=0.315 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCC--HHHHHHHHHHhHhhcCCCCchHHHHHHH
Q 005305 414 GEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGL--SERGWEIFQSMSRDHKIKPRAMHYACMI 476 (703)
Q Consensus 414 ~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li 476 (703)
.+.+..+|+.+.+.|+..+. .....+|..+..... +.++.++++.+.+ .++++...+|..+.
T Consensus 159 ~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lG 224 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHH
Confidence 35667778888877777654 334444443333222 3467777888877 68888887776543
No 275
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.49 E-value=13 Score=33.78 Aligned_cols=134 Identities=18% Similarity=0.137 Sum_probs=79.1
Q ss_pred HHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcc-hHHHHHHHHHhCCChHHHHHHHccCC
Q 005305 114 LELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY-MRNRVLLMHVRCGMMIDARRLFDEMP 192 (703)
Q Consensus 114 ~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~-~~~~Li~~y~~~g~~~~A~~~f~~m~ 192 (703)
++..+.+.+.+ ++|+...+..+++.+.+.|++..-.++. ..++-+|.. +...|+..- +....+.++=-.|.
T Consensus 14 lEYirSl~~~~-i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 14 LEYIRSLNQHN-IPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhH---ccChHHHHHHHHHH
Confidence 34455556677 8999999999999999999876554444 344445443 333333322 22233333333333
Q ss_pred CCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 005305 193 ERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALK 259 (703)
Q Consensus 193 ~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 259 (703)
.+=...+..++..+...|++-+|+++.+..... +...-..++.+..+.+|...-..++.....
T Consensus 86 kRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 86 KRLGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222235667888899999999999998775322 223334556666666665555555544443
No 276
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.69 E-value=20 Score=40.55 Aligned_cols=80 Identities=14% Similarity=0.126 Sum_probs=36.6
Q ss_pred hhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHH
Q 005305 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454 (703)
Q Consensus 375 ~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 454 (703)
+-+.+.|+.++|...|-+....-.. ..+|.-|....+..+-..+++.+.+.|+. +...-+.||.+|.+.++.+.-.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~e 452 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTE 452 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHH
Confidence 3334456666665555443211111 11344444444445555555555555544 22222345555556555555544
Q ss_pred HHH
Q 005305 455 IFQ 457 (703)
Q Consensus 455 ~~~ 457 (703)
+.+
T Consensus 453 fI~ 455 (933)
T KOG2114|consen 453 FIS 455 (933)
T ss_pred HHh
Confidence 443
No 277
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.62 E-value=47 Score=36.24 Aligned_cols=381 Identities=10% Similarity=0.002 Sum_probs=203.3
Q ss_pred hhhhhhhccccccCCCCcccchhhcccccCccCCCCCcc-cHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHH
Q 005305 58 ECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAG-ICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDA 135 (703)
Q Consensus 58 ~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~-~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 135 (703)
+-..|+.||.---..... +++ +.+++.+..+.|... -|-..-. -.+-|..+.+.++|++-... ++-+...|..
T Consensus 44 ~f~~wt~li~~~~~~~~~-~~~--r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a--ip~SvdlW~~ 118 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDV-DAL--REVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA--IPLSVDLWLS 118 (577)
T ss_pred cccchHHHHhccCchhHH-HHH--HHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--hhhHHHHHHH
Confidence 445667777654443344 444 888888877766655 3555555 67789999999999998764 6767777777
Q ss_pred HHHHHh-ccCChHHHHHHHHHHHHh-CCC-CCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHh---C
Q 005305 136 LISACI-GLRSIREVKRVFSYMLST-GFE-PDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID---S 209 (703)
Q Consensus 136 ll~~~~-~~~~~~~a~~l~~~~~~~-g~~-~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~---~ 209 (703)
.+..+. ..|+.+..+.+|+.++.. |.. .+...|...|..-..++++.....+++.+.+--...++..-.-|.+ .
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhc
Confidence 776555 557888889999988774 432 2345677777777788899999999988876434444443333322 2
Q ss_pred ------CChhHHHHHHHHhHHc----CCCCChhhHHHHHHHHhc-CCChHHHH------------------------HHH
Q 005305 210 ------GDYLEAFLLFLDLWEE----FSDCGSRTFATMIRASAG-LELISVGK------------------------QLH 254 (703)
Q Consensus 210 ------g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a~~~-~~~~~~a~------------------------~~~ 254 (703)
-..+++.++-...... -..+.......-++-... .+.++..+ ..+
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~f 278 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGF 278 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Confidence 1122222222211110 000111111111111111 11111111 111
Q ss_pred HHHHHhC-------CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC---cccHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005305 255 SCALKMG-------FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT---TVGWNTIIAGYALHGYSEEALDLYYEMR 324 (703)
Q Consensus 255 ~~~~~~g-------~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~ 324 (703)
+..++.- ..++...|...++.-.+.|+.+...-+|++..-+- ...|--.+.-....|+.+-|-.++..-.
T Consensus 279 E~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 279 EEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred hhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 1212111 12244577777777778888888888888766541 2234444443344477777766665554
Q ss_pred HCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHH---HHhhhcC--cCChh
Q 005305 325 DSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR---HVFDKML--CKNVI 399 (703)
Q Consensus 325 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~---~~f~~m~--~~~~~ 399 (703)
+--++-.+.+-..-..-+-..|+...|..+++.+...- +.-+.+-..-+.+-.+.|..+.+. .++.... ..+..
T Consensus 359 ~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~ 437 (577)
T KOG1258|consen 359 KIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNG 437 (577)
T ss_pred hhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcc
Confidence 43333233222222222345677888888888777653 223333334455666677777766 3333221 12222
Q ss_pred hHHHHHHHHH-----hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 005305 400 SWNALIAGYG-----NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445 (703)
Q Consensus 400 ~~~~li~~~~-----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 445 (703)
..+.+..-++ -.++.+.|..++.+|.+. ..++..-|..++.-+..
T Consensus 438 i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 438 ILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 2222322222 245566666666666653 33344445555544433
No 278
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.37 E-value=39 Score=35.00 Aligned_cols=149 Identities=8% Similarity=0.000 Sum_probs=74.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc---CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc--hH
Q 005305 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP---NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR--AM 470 (703)
Q Consensus 396 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 470 (703)
....+|..+...+.+.|+++.|...+.++...+..+ +......-.......|+.++|...++...+. .+... ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345577778888888888888888888777643111 2223333344556667777887777766551 11111 11
Q ss_pred HHHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHH------cCChhHHHHHHHHHhCCCCCCcchHHHHHH
Q 005305 471 HYACMIELLGREGLLDEAFAL-IRGAPFKTTKNMWAALLTACRV------NGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~a~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 543 (703)
....+...+.. ..+..... ......+.-...+..+..-+.. .++.+.+...++++.++.|+....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111100000 00000000 0000000001122222222223 367788888899999999887777777766
Q ss_pred HHHh
Q 005305 544 IYNS 547 (703)
Q Consensus 544 ~y~~ 547 (703)
.+.+
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 6544
No 279
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=87.07 E-value=12 Score=32.03 Aligned_cols=86 Identities=16% Similarity=0.200 Sum_probs=56.8
Q ss_pred hHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCcC--HHHHHHHHHHHHccCCH
Q 005305 376 FYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLN-GMRPN--HVTFLAVLSACSRSGLS 449 (703)
Q Consensus 376 ~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~--~~t~~~ll~a~~~~g~~ 449 (703)
+.+..|+++.|.+.|.+.. ..+...||.-..++.-+|+.++|++=+++..+. |-+-- ...|..-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 4566777888888777653 346667787788888888888888877777663 32211 13344444556677777
Q ss_pred HHHHHHHHHhHh
Q 005305 450 ERGWEIFQSMSR 461 (703)
Q Consensus 450 ~~a~~~~~~m~~ 461 (703)
+.|+.=|+...+
T Consensus 132 d~AR~DFe~AA~ 143 (175)
T KOG4555|consen 132 DAARADFEAAAQ 143 (175)
T ss_pred HHHHHhHHHHHH
Confidence 777777776654
No 280
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.85 E-value=25 Score=35.70 Aligned_cols=162 Identities=14% Similarity=0.088 Sum_probs=92.5
Q ss_pred cHHHHHHHHHHcCCcHHHHHHHHHHHH-CCCCCC---HhhHHHHHHHHhccCCHHHHHHHHHHHHHcC-----CCCchHH
Q 005305 299 GWNTIIAGYALHGYSEEALDLYYEMRD-SGVKMD---HFTFSMIIRICTRLASLEHAKQAHAGLVRHG-----FGLDIVA 369 (703)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~ 369 (703)
+|-.+..++-+.-++.+++.+-+.-.. .|..|. -....++-.++...+.++++.+.|+.+.+.. .-....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344455555555555555554433222 122221 1123345566777777888888887776632 1123567
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhc-------CcCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCCcC
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKM-------LCKNVI------SWNALIAGYGNHGRGEEAVELFEQMLL----NGMRPN 432 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m-------~~~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~ 432 (703)
+.+|...|.+..++++|.-+..+. .-.|.. +.-.|..++...|...+|.+.-++..+ .|-+|-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 888888898888888876554433 222322 122344567777777777776665433 343333
Q ss_pred H-HHHHHHHHHHHccCCHHHHHHHHHHhH
Q 005305 433 H-VTFLAVLSACSRSGLSERGWEIFQSMS 460 (703)
Q Consensus 433 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 460 (703)
. .....+.+.|...|+.+.|+.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 344455667778888888777666553
No 281
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.82 E-value=4.7 Score=39.91 Aligned_cols=76 Identities=17% Similarity=0.223 Sum_probs=59.6
Q ss_pred hHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCcCHHHHHH
Q 005305 367 IVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLL-----NGMRPNHVTFLA 438 (703)
Q Consensus 367 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 438 (703)
..++..++..+..+|+.+.+.+.++++.. -|...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 45677888899999999999999888854 3667899999999999999999999988875 466666655544
Q ss_pred HHHH
Q 005305 439 VLSA 442 (703)
Q Consensus 439 ll~a 442 (703)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4433
No 282
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.74 E-value=1.3 Score=29.99 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=27.1
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 536 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
.++..++..|.+.|++++|.+++++..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 578899999999999999999999998654
No 283
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.67 E-value=1.1e+02 Score=39.42 Aligned_cols=309 Identities=14% Similarity=0.098 Sum_probs=162.8
Q ss_pred HHhcCCChHHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHHHHHHHHhh-cCCCCcccHHHHHHHHHHcCCcHHH
Q 005305 240 ASAGLELISVGKQLHSCALKMGF--GDNVFVSCALIDMYSKCGSIEDAQGVFDE-MSEKTTVGWNTIIAGYALHGYSEEA 316 (703)
Q Consensus 240 a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-m~~~~~~~~~~li~~~~~~g~~~~A 316 (703)
+-.+.+.+..|...++.-..... ......+..+...|+.-+++|....+... ...+ +...-|.-....|++..|
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~---sl~~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADP---SLYQQILEHEASGNWADA 1468 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCc---cHHHHHHHHHhhccHHHH
Confidence 34445555566665554210000 11223444455577777777776666552 3332 233345556667888888
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHH-HhhHHhcCCHHHHHHHhhhcCc
Q 005305 317 LDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL-VDFYSKWGRIEDARHVFDKMLC 395 (703)
Q Consensus 317 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L-i~~y~k~g~~~~A~~~f~~m~~ 395 (703)
...|+++.+.+ ++...+++.++......+.+.......+..... ..+...-++++ +.+--+.++++....... .
T Consensus 1469 ~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~ 1543 (2382)
T KOG0890|consen 1469 AACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---D 1543 (2382)
T ss_pred HHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---c
Confidence 88888887753 233667777777666666666665544433332 22223333332 344456677777666655 6
Q ss_pred CChhhHHHH-HH-HHHhc--CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHH----H------HHhHh
Q 005305 396 KNVISWNAL-IA-GYGNH--GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEI----F------QSMSR 461 (703)
Q Consensus 396 ~~~~~~~~l-i~-~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~----~------~~m~~ 461 (703)
++..+|.+. +. ...+. .+.-.-.++.+.+++.-+.| +.+|+..|.+..+.++ + .....
T Consensus 1544 ~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~ 1615 (2382)
T KOG0890|consen 1544 RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEE 1615 (2382)
T ss_pred ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777765 22 22221 11111112333333221111 2233333322222211 1 11111
Q ss_pred hcCCCCchHHHHH---HHHHHHhcCChHHHHHH---HHh----CCCCC-----CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005305 462 DHKIKPRAMHYAC---MIELLGREGLLDEAFAL---IRG----APFKT-----TKNMWAALLTACRVNGNLELGKFAAEK 526 (703)
Q Consensus 462 ~~~~~p~~~~~~~---li~~~~~~g~~~~A~~~---~~~----m~~~p-----~~~~~~~ll~a~~~~g~~~~a~~~~~~ 526 (703)
..+..++..+.+. ...-+.+.+....+.+- +++ ...+| -..+|......++..|.++.|..+.-+
T Consensus 1616 l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~ 1695 (2382)
T KOG0890|consen 1616 LKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLN 1695 (2382)
T ss_pred hhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 1233333221110 00111122222222222 111 11122 245899999999999999999999888
Q ss_pred HhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 527 LYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 527 ~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
+.+..+ +..+.-.+..+...|+-..|..++++-.+...
T Consensus 1696 A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1696 AKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred hhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 877775 47899999999999999999999999886654
No 284
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.66 E-value=57 Score=36.78 Aligned_cols=22 Identities=18% Similarity=0.304 Sum_probs=16.9
Q ss_pred HHHHHHhCCChhHHHHHHHHhH
Q 005305 202 IIAGMIDSGDYLEAFLLFLDLW 223 (703)
Q Consensus 202 li~~~~~~g~~~~A~~~~~~m~ 223 (703)
|...|...+++..|+.++-..+
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 7777888888888888776654
No 285
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=86.11 E-value=23 Score=32.21 Aligned_cols=133 Identities=12% Similarity=0.080 Sum_probs=78.7
Q ss_pred HHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHhC-CCHHHHHHHHhhcC
Q 005305 216 FLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF-GDNVFVSCALIDMYSKC-GSIEDAQGVFDEMS 293 (703)
Q Consensus 216 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~Li~~y~~~-g~~~~A~~~f~~m~ 293 (703)
++..+.+.+.++.|+...+..++..+.+.|.+..-.++ +..++ +++..+...|++.-.+. .-..-|.+++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 45566666778888888888888888888877654443 33343 44444444444432211 01233444455443
Q ss_pred CCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005305 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360 (703)
Q Consensus 294 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 360 (703)
..+..++..+...|++-+|+++.+..... +......++.+..+.++...--.+++....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24556777888888888888887764221 223334566666666666655555555544
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.10 E-value=4.2 Score=36.37 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=38.0
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
...++.+.++.++.-+.-+.|..+..-..-+.++...|+|++|.++++.+.+..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 355667777777777777777777777777777777777777777777766544
No 287
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.67 E-value=31 Score=32.99 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=33.1
Q ss_pred HHhcCChHHHHHHHHhCC---CCCCHHHHH---HHH--HHHHHc-CChhHHHHHHHHHhCCCCC
Q 005305 479 LGREGLLDEAFALIRGAP---FKTTKNMWA---ALL--TACRVN-GNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 479 ~~~~g~~~~A~~~~~~m~---~~p~~~~~~---~ll--~a~~~~-g~~~~a~~~~~~~~~~~p~ 533 (703)
-+..|++.+|.++|++.. ...+..-|. -++ ..|.-. .+.-.+..++++-.+++|.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 346788899999987642 122222222 112 223323 6666777888888888887
No 288
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.28 E-value=5.2 Score=35.17 Aligned_cols=54 Identities=15% Similarity=0.059 Sum_probs=45.0
Q ss_pred HcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 513 VNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 513 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
..++.+.++.+...+.-+.|+.+..-..-+.++...|+|+||.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 477888888888888888888888888888889999999999999988876653
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.21 E-value=16 Score=33.11 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=24.1
Q ss_pred hCCCHHHHHHHHhhcCCCCcccHHHHH-----HHHHHcCCcHHHHHHHHHHHHC
Q 005305 278 KCGSIEDAQGVFDEMSEKTTVGWNTII-----AGYALHGYSEEALDLYYEMRDS 326 (703)
Q Consensus 278 ~~g~~~~A~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~ 326 (703)
+.+..++|..-|..+.+.+--+|-.|. ....+.|+...|...|.+.-..
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 344455555555555544444443332 2234455555555555555443
No 290
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.96 E-value=51 Score=34.09 Aligned_cols=67 Identities=21% Similarity=0.375 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC----CcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE----KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 500 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
...+|..+...+++.|+++.|...+.++....+. .+.....-+..+...|+-++|...++...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999876522 356677788999999999999999988876433
No 291
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.73 E-value=17 Score=36.72 Aligned_cols=122 Identities=16% Similarity=0.182 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHhCCCCCcchHHHHHHHHHh--CC----ChHHHHHHHccCCC-------CCcccHHHHHHHHHhCCCh
Q 005305 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVR--CG----MMIDARRLFDEMPE-------RNLVSCNMIIAGMIDSGDY 212 (703)
Q Consensus 146 ~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~--~g----~~~~A~~~f~~m~~-------~d~~~~~~li~~~~~~g~~ 212 (703)
++....+++.+.+.|+..+.+++-+..-.... .. ....|..+|+.|.+ ++-.++..|+.. ...++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45566777888888887777666553333322 11 23446666666654 233444444443 22222
Q ss_pred ----hHHHHHHHHhHHcCCCCChh--hHHHHHHHHhcCCC--hHHHHHHHHHHHHhCCCCcHHHH
Q 005305 213 ----LEAFLLFLDLWEEFSDCGSR--TFATMIRASAGLEL--ISVGKQLHSCALKMGFGDNVFVS 269 (703)
Q Consensus 213 ----~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~ 269 (703)
+.+...|+.+.+.|...+.. ..+.+|..+....+ ...+..++..+.+.|++.....|
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~y 220 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHY 220 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccc
Confidence 34455566665555544322 22222222222211 22344455555555554444333
No 292
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.50 E-value=97 Score=36.90 Aligned_cols=115 Identities=13% Similarity=0.081 Sum_probs=65.4
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHH
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 452 (703)
.++.--+.|.+.+|..++..=.++-.+.|.+...-+...+.+++|.-.|+..-+ ..-.+.+|...|+|+++
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 334444556666666555433333333444444444556677777666655322 11345677778888888
Q ss_pred HHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 005305 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFK 498 (703)
Q Consensus 453 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 498 (703)
..+..++.. +-.--..+--.|+.-+...+++-+|-++..+....
T Consensus 985 l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd 1028 (1265)
T KOG1920|consen 985 LSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD 1028 (1265)
T ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC
Confidence 888776643 11111223356777777788888887777765433
No 293
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.23 E-value=4.9 Score=40.18 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=28.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHH
Q 005305 407 GYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGW 453 (703)
Q Consensus 407 ~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~ 453 (703)
-|.++|.+++|+..|..-.. +.| |.+++..-..||.+...+..|.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE 151 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAE 151 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHH
Confidence 45667777777777766554 455 6677766666776665554443
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.20 E-value=2.4 Score=27.19 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=16.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQML 425 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~ 425 (703)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666677777777777777777644
No 295
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=83.96 E-value=29 Score=30.48 Aligned_cols=113 Identities=16% Similarity=0.059 Sum_probs=62.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCC
Q 005305 407 GYGNHGRGEEAVELFEQMLLNGMRP--NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484 (703)
Q Consensus 407 ~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 484 (703)
...+.|++++|.+.|+.+...-..+ ....-..++.++.+.+++++|...+++.++.+.-.|++ .|.....+++.-..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHHH
Confidence 3455677777777777776641111 22455566777777778888877777777755444443 34444444433222
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCc
Q 005305 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535 (703)
Q Consensus 485 ~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 535 (703)
.+..+.-|- ..+.|. +....|...+++++..-|++.
T Consensus 98 ~~~~~~~~~--~~drD~-------------~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 98 DEGSLQSFF--RSDRDP-------------TPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhhHHhhhc--ccccCc-------------HHHHHHHHHHHHHHHHCcCCh
Confidence 221111111 111121 224567777888888888753
No 296
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.37 E-value=4 Score=37.60 Aligned_cols=89 Identities=16% Similarity=0.045 Sum_probs=66.7
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC------CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC
Q 005305 478 LLGREGLLDEAFALIRGA-PFKT------TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m-~~~p------~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 550 (703)
-+.+.|++++|..-|... ..-| ..+.|..-..+..+.+..+.|.....+++++.|....+..--+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 345667777777666542 1111 233455555667788999999999999999999887788888899999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 005305 551 LKEAAEVIRTLRRKGL 566 (703)
Q Consensus 551 ~~~A~~~~~~m~~~~~ 566 (703)
+++|.+=++++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999887543
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.29 E-value=34 Score=30.73 Aligned_cols=90 Identities=17% Similarity=0.060 Sum_probs=50.6
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCchH-HHHHHHHHHHhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChh
Q 005305 441 SACSRSGLSERGWEIFQSMSRDHKIKPRAM-HYACMIELLGREGLLDEAFALIRGAPF-KTTKNMWAALLTACRVNGNLE 518 (703)
Q Consensus 441 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~~~~~~~ll~a~~~~g~~~ 518 (703)
+.-.+.++.+++..++..+.- +.|... .-..-.-.+.+.|++.+|..+|+++.. .|....-.+|+.-|.....-.
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 334456677777777777744 334322 222233445678888888888887643 334444456666665444433
Q ss_pred HHHHHHHHHhCCCCC
Q 005305 519 LGKFAAEKLYGMEPE 533 (703)
Q Consensus 519 ~a~~~~~~~~~~~p~ 533 (703)
.=.....++++..|+
T Consensus 95 ~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 95 SWRRYADEVLESGAD 109 (160)
T ss_pred HHHHHHHHHHhcCCC
Confidence 334445555555543
No 298
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=83.02 E-value=2.2 Score=42.44 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=77.4
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHHcCC
Q 005305 440 LSACSRSGLSERGWEIFQSMSRDHKIKP-RAMHYACMIELLGREGLLDEAFALIRGAP-FK-TTKNMWAALLTACRVNGN 516 (703)
Q Consensus 440 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~ll~a~~~~g~ 516 (703)
.+-|.+.|.+++|...|..... +.| ++.++..-..+|.+..++..|+.-.+... .. .-...|.--..|-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 4568889999999999887654 345 77788888888998888887776554421 11 112245555555566788
Q ss_pred hhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 005305 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559 (703)
Q Consensus 517 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 559 (703)
.++|..-++..++++|++.. |-..|++.....|+.-+.+
T Consensus 181 ~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIATK 219 (536)
T ss_pred HHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHHhh
Confidence 89999999999999998543 4455555555666554443
No 299
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=82.83 E-value=49 Score=32.20 Aligned_cols=157 Identities=18% Similarity=0.112 Sum_probs=87.8
Q ss_pred cccHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-ChhhHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCCcchHHHHH
Q 005305 95 AGICSQIEKLVLNKRYREALELFEILEFEGGFDV-GSSTYDALISACIGLRSIREVKRVFSYMLSTG-FEPDLYMRNRVL 172 (703)
Q Consensus 95 ~~~~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g-~~~~~~~~~~Li 172 (703)
...|+..+.-.+.|++++|.+.|+.+..+....| ...+...++-++-+.++.++|....++.++.- -.||. -|-.-|
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYL 113 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHH
Confidence 3456666667789999999999999987541112 34556666777788999999999998888763 23333 343344
Q ss_pred HHHHhC-------CChHHHHHHHccCCC-----CCc------cc-----------HH-HHHHHHHhCCChhHHHHHHHHh
Q 005305 173 LMHVRC-------GMMIDARRLFDEMPE-----RNL------VS-----------CN-MIIAGMIDSGDYLEAFLLFLDL 222 (703)
Q Consensus 173 ~~y~~~-------g~~~~A~~~f~~m~~-----~d~------~~-----------~~-~li~~~~~~g~~~~A~~~~~~m 222 (703)
.+.+.. .+...++..|+.+.+ ||. .. ++ .+.+-|.+.|.+..|..-+++|
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 444322 334444444444432 221 11 01 2334566666666666666666
Q ss_pred HHcCCCCCh---hhHHHHHHHHhcCCChHHHHHH
Q 005305 223 WEEFSDCGS---RTFATMIRASAGLELISVGKQL 253 (703)
Q Consensus 223 ~~~g~~p~~---~t~~~ll~a~~~~~~~~~a~~~ 253 (703)
.+. ..-.. ..+..+..++-..|-.++|...
T Consensus 194 ~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 194 LEN-YPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred Hhc-cccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 654 11111 1333344445555555544443
No 300
>PRK09687 putative lyase; Provisional
Probab=82.78 E-value=55 Score=32.80 Aligned_cols=75 Identities=5% Similarity=0.002 Sum_probs=39.9
Q ss_pred CchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005305 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444 (703)
Q Consensus 365 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 444 (703)
++..+-...+.++.+.|+.+-...+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 344555555555556655332222233333333 123466777777774 677777777753 456655555555553
No 301
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=82.68 E-value=2.7 Score=26.24 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3566677777777777777777777766
No 302
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.33 E-value=8.6 Score=30.95 Aligned_cols=63 Identities=16% Similarity=0.210 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 413 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
+.-++.+-++.+....+-|+.....+.|.||.+.+++..|.++|+.++.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3446666777777778899999999999999999999999999998875333 34556766654
No 303
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=81.91 E-value=9.7 Score=31.02 Aligned_cols=62 Identities=15% Similarity=0.162 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHH
Q 005305 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478 (703)
Q Consensus 415 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 478 (703)
-+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+.++.+.+ +....|..+++-
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 35566666666777889999999999999999999999999999887544 334477777653
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.84 E-value=18 Score=33.38 Aligned_cols=94 Identities=16% Similarity=0.040 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCC--CCc----hHHH
Q 005305 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERGWEIFQSMSRDHKI--KPR----AMHY 472 (703)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~----~~~~ 472 (703)
+..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+.-.+++..+..+..++.....- .++ ...|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 334444455555555555555555544333333 23344444555555555555554444331100 011 1122
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC
Q 005305 473 ACMIELLGREGLLDEAFALIRGAP 496 (703)
Q Consensus 473 ~~li~~~~~~g~~~~A~~~~~~m~ 496 (703)
..+. +...|++.+|-+.|-...
T Consensus 119 ~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 119 EGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHH--HHHhchHHHHHHHHHccC
Confidence 2222 224577888777776543
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=81.80 E-value=2.6 Score=26.68 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=21.9
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHhCCCHHHHH
Q 005305 256 CALKMGFGDNVFVSCALIDMYSKCGSIEDAQ 286 (703)
Q Consensus 256 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 286 (703)
.+++.. |.+..+|+.|...|...|++++|+
T Consensus 4 kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 4 KAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344443 567788888888888888888875
No 306
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=81.72 E-value=1.5 Score=27.40 Aligned_cols=29 Identities=21% Similarity=0.135 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhCCCC
Q 005305 504 WAALLTACRVNGNLELGKFAAEKLYGMEP 532 (703)
Q Consensus 504 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 532 (703)
|..+...+...|+.++|...+++.++++|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33444444555555555555555554444
No 307
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.74 E-value=2.3 Score=24.89 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=19.6
Q ss_pred chHHHHHHHHHhCCChHHHHHHHH
Q 005305 536 SNYVVLLNIYNSSGKLKEAAEVIR 559 (703)
Q Consensus 536 ~~~~~l~~~y~~~g~~~~A~~~~~ 559 (703)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356778889999999999988775
No 308
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.14 E-value=14 Score=40.07 Aligned_cols=162 Identities=14% Similarity=0.070 Sum_probs=105.4
Q ss_pred CcccHHHHHH------HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcch
Q 005305 94 SAGICSQIEK------LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM 167 (703)
Q Consensus 94 ~~~~~~~li~------~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~ 167 (703)
|+++|..+++ ..-.|+++.|-.++..+. ....+.+...+.++|-.++|.++ ...||.
T Consensus 580 nVi~y~l~l~vleyqt~vmrrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~-------s~D~d~-- 642 (794)
T KOG0276|consen 580 NVISYKILLEVLEYQTLVLRRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALEL-------STDPDQ-- 642 (794)
T ss_pred ceEeEeeehHHHHHHHHhhhccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhc-------CCChhh--
Confidence 7787766655 234566776666554433 22344555556666655555442 223332
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCCh
Q 005305 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI 247 (703)
Q Consensus 168 ~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 247 (703)
-.....+.|+++.|.++..+. .+..-|..|.++..+.|++..|.+.|...+. |.+|+-.+...|+-
T Consensus 643 ---rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~ 708 (794)
T KOG0276|consen 643 ---RFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNA 708 (794)
T ss_pred ---hhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCCh
Confidence 234455789999999887554 4677899999999999999999999986543 66777777777877
Q ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 005305 248 SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292 (703)
Q Consensus 248 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m 292 (703)
+....+-....+.| .. |.-.-+|...|+++++.+++.+-
T Consensus 709 ~~l~~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 709 EGLAVLASLAKKQG-KN-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hHHHHHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 76666656666655 22 22233566678888888877654
No 309
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.13 E-value=7.8 Score=38.37 Aligned_cols=61 Identities=21% Similarity=0.295 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
++..++.++...|+.+.+...+++++..+|-+-..|..|+.+|.+.|+...|...++++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4556667777778888888888888899998888899999999999999999999988875
No 310
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.72 E-value=3.4 Score=25.66 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=24.7
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 536 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
..|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46888999999999999999999988753
No 311
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.56 E-value=19 Score=35.77 Aligned_cols=101 Identities=12% Similarity=0.015 Sum_probs=73.5
Q ss_pred hCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC-------CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCh
Q 005305 159 TGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE-------RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231 (703)
Q Consensus 159 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-------~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 231 (703)
.|.+....+...++..-....+++++...+-.+.. |+... .+.++.+. .-++++++.++..=..-|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence 35555666667777777777888888887766643 22221 22333333 34677899888888888999999
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 005305 232 RTFATMIRASAGLELISVGKQLHSCALKMG 261 (703)
Q Consensus 232 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 261 (703)
+|++.++..+.+.+++..|.++.-.++...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999988888777654
No 312
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.52 E-value=3.6 Score=26.97 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=23.7
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 536 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.++..|+.+|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998764
No 313
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.22 E-value=52 Score=29.14 Aligned_cols=20 Identities=15% Similarity=0.308 Sum_probs=10.9
Q ss_pred HHhCCCHHHHHHHHhhcCCC
Q 005305 276 YSKCGSIEDAQGVFDEMSEK 295 (703)
Q Consensus 276 y~~~g~~~~A~~~f~~m~~~ 295 (703)
+...|++++|.++|+++.+.
T Consensus 54 ~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 54 LIARGNYDEAARILRELLSS 73 (153)
T ss_pred HHHcCCHHHHHHHHHhhhcc
Confidence 34455556666665555543
No 314
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.73 E-value=37 Score=27.68 Aligned_cols=85 Identities=12% Similarity=0.053 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHC
Q 005305 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS 326 (703)
Q Consensus 247 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 326 (703)
-++|..|-+.+...+- ....+.-.-+..+...|++++|..+.+.+..||...|-++-.. +.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhC
Confidence 3455555554444331 1222333334456778999999999999999999999887663 567777777777777777
Q ss_pred CCCCCHhhH
Q 005305 327 GVKMDHFTF 335 (703)
Q Consensus 327 g~~pd~~t~ 335 (703)
| .|...+|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 6 4444444
No 315
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.27 E-value=1.8 Score=38.36 Aligned_cols=84 Identities=18% Similarity=0.165 Sum_probs=57.4
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHH
Q 005305 237 MIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316 (703)
Q Consensus 237 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 316 (703)
++..+.+.+.......+++.+++.+...+....+.|+..|++.++.++..++++.... .....++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4556666677777777788887766567788889999999998877777777773332 3445566666667777777
Q ss_pred HHHHHHH
Q 005305 317 LDLYYEM 323 (703)
Q Consensus 317 ~~l~~~m 323 (703)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 7666554
No 316
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=74.29 E-value=30 Score=31.96 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=14.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCCC
Q 005305 167 MRNRVLLMHVRCGMMIDARRLFDEMPE 193 (703)
Q Consensus 167 ~~~~Li~~y~~~g~~~~A~~~f~~m~~ 193 (703)
.+..+.+.|.+.|+.+.|.+.|.++.+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~ 64 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARD 64 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 344555555555555555555555544
No 317
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.83 E-value=7.1 Score=24.19 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 536 SNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 536 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4688999999999999999999998764
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=73.74 E-value=1.7 Score=38.57 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=41.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHH
Q 005305 338 IIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417 (703)
Q Consensus 338 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 417 (703)
++..+.+.+.++....+++.+.+.+...+..+.+.++.+|++.++.++..++++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3444555555555666666666555445566667777777776665666665553222 2222334444444444444
Q ss_pred HHHHH
Q 005305 418 VELFE 422 (703)
Q Consensus 418 ~~l~~ 422 (703)
.-++.
T Consensus 90 ~~Ly~ 94 (143)
T PF00637_consen 90 VYLYS 94 (143)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 319
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.35 E-value=27 Score=34.82 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=66.2
Q ss_pred CCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc-------C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC
Q 005305 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-------K--NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432 (703)
Q Consensus 362 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 432 (703)
|......+...+++.-....+++++...+-++.. + ..++|-.+ +..-++++++.++..=++.|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhccccc
Confidence 4444444555666666666778888777766632 1 22333322 223456788888888888899999
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 433 HVTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 433 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
..|+..+++.+.+.+++.+|.++...|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999999888887766654
No 320
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=73.23 E-value=34 Score=32.70 Aligned_cols=56 Identities=14% Similarity=0.234 Sum_probs=34.6
Q ss_pred HHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHh
Q 005305 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASA 242 (703)
Q Consensus 185 ~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 242 (703)
..+|.-..+|.+..-..|+..+. .+++++|.+.+.++.+.|..|... .+++++.+-
T Consensus 228 enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~K 283 (333)
T KOG0991|consen 228 ENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVVK 283 (333)
T ss_pred hhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHHH
Confidence 34555555566666666666543 456788888888888888776543 334444443
No 321
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=73.07 E-value=1.2e+02 Score=31.42 Aligned_cols=192 Identities=13% Similarity=0.177 Sum_probs=114.0
Q ss_pred CCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHH--HHHHHcCCCcCHHHHHHHHH
Q 005305 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELF--EQMLLNGMRPNHVTFLAVLS 441 (703)
Q Consensus 364 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~--~~m~~~g~~p~~~t~~~ll~ 441 (703)
..+..+...+++++...++|+.--+. +....-++|+...|+.-. +-|.-..-.||..|-..++.
T Consensus 49 ~s~~kv~~~i~~lc~~~~~w~~Lne~--------------i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~ 114 (439)
T KOG1498|consen 49 ASNTKVLEEIMKLCFSAKDWDLLNEQ--------------IRLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIE 114 (439)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHH--------------HHHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHH
Confidence 34455666667777777666554332 122334567766665421 22222223456555555554
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH------------HH
Q 005305 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAAL------------LT 509 (703)
Q Consensus 442 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------l~ 509 (703)
.... +.++. +|-+.. ....-..|...+..+|++++|.+++.+.+.+ ||+++ +.
T Consensus 115 tLr~---Vtegk-IyvEvE-------RarlTk~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmr 179 (439)
T KOG1498|consen 115 TLRT---VTEGK-IYVEVE-------RARLTKMLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMR 179 (439)
T ss_pred HHHH---hhcCc-eEEeeh-------HHHHHHHHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHH
Confidence 3321 11111 111111 1223345677888999999999999887642 33332 45
Q ss_pred HHHHcCChhHHHHHHHHHhCCC---CC----CcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEE
Q 005305 510 ACRVNGNLELGKFAAEKLYGME---PE----KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPH 582 (703)
Q Consensus 510 a~~~~g~~~~a~~~~~~~~~~~---p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~ 582 (703)
.|...+|+-.|.-..+++...- |+ ....|..++.+....+.+=++-+.++..-+.|-.+....-|+.+-..+-
T Consensus 180 KOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv 259 (439)
T KOG1498|consen 180 LCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIV 259 (439)
T ss_pred HHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhhe
Confidence 6778889988888887775322 22 1245889999999999999999999999887766665455776544333
Q ss_pred EE
Q 005305 583 VF 584 (703)
Q Consensus 583 ~~ 584 (703)
.|
T Consensus 260 ~f 261 (439)
T KOG1498|consen 260 SF 261 (439)
T ss_pred eE
Confidence 33
No 322
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.03 E-value=7.5 Score=25.33 Aligned_cols=28 Identities=43% Similarity=0.564 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566777777777778777777777654
No 323
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=72.72 E-value=2.2e+02 Score=34.16 Aligned_cols=61 Identities=13% Similarity=0.041 Sum_probs=28.0
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 005305 467 PRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528 (703)
Q Consensus 467 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 528 (703)
++...-...+.++++.|..+.+...+......+|..+-...+.++...+. +++...+..++
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L 847 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEAL 847 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHh
Confidence 44555555566666666544433333332233454444445555555443 23333333333
No 324
>PRK11619 lytic murein transglycosylase; Provisional
Probab=72.60 E-value=1.8e+02 Score=33.17 Aligned_cols=380 Identities=11% Similarity=0.005 Sum_probs=172.7
Q ss_pred HHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChH
Q 005305 169 NRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELIS 248 (703)
Q Consensus 169 ~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 248 (703)
..-+..+.+.++++...+ |..-+..+.........+....|+.++|....+.+...|.. .+.....++..+.+.|.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 103 SRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCC
Confidence 334445556677777776 43222344444555666777777777777777766555432 3445555555555444332
Q ss_pred HHH--HHHHHHHHhC-----------CCCc-HHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHH--HcCC
Q 005305 249 VGK--QLHSCALKMG-----------FGDN-VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYA--LHGY 312 (703)
Q Consensus 249 ~a~--~~~~~~~~~g-----------~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~--~~g~ 312 (703)
... +=+..+...| ++++ ......++..+.+ ...+..++.... ++...-...+.++. ...+
T Consensus 181 ~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d 256 (644)
T PRK11619 181 PLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVAFASVARQD 256 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHHHHHHHHhC
Confidence 211 1111111111 0111 1112222222221 222222222221 11111111111221 2345
Q ss_pred cHHHHHHHHHHHHCC-CCCCHh--hHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHH
Q 005305 313 SEEALDLYYEMRDSG-VKMDHF--TFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389 (703)
Q Consensus 313 ~~~A~~l~~~m~~~g-~~pd~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 389 (703)
.+.|..++....... ..+... ....+..........+.+...+....... .+..+...-+..-.+.++++.+...
T Consensus 257 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 257 AENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHH
Confidence 577777777664332 222222 11222222222211334444444333221 2334444445555577788888777
Q ss_pred hhhcCc--CChhhH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHH-HHHHHHhHhhcCC
Q 005305 390 FDKMLC--KNVISW-NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG-WEIFQSMSRDHKI 465 (703)
Q Consensus 390 f~~m~~--~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a-~~~~~~m~~~~~~ 465 (703)
|..|+. .+..-| -=+..++...|+.++|...|+++.. . .+|-.++.+ .+.|..-.- ......-.. .+
T Consensus 335 i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~---~~fYG~LAa-~~Lg~~~~~~~~~~~~~~~--~~ 405 (644)
T PRK11619 335 LARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---Q---RGFYPMVAA-QRLGEEYPLKIDKAPKPDS--AL 405 (644)
T ss_pred HHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---C---CCcHHHHHH-HHcCCCCCCCCCCCCchhh--hh
Confidence 777743 111112 1244555667888888888887632 1 234444432 122211000 000000000 00
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCC---CCCcchHHHHH
Q 005305 466 KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME---PEKLSNYVVLL 542 (703)
Q Consensus 466 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~ 542 (703)
...+ -..-+..+...|...+|...+..+....+......+...-...|..+.+.....+....+ -.-+..|.-.+
T Consensus 406 ~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~ 483 (644)
T PRK11619 406 TQGP--EMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEF 483 (644)
T ss_pred ccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHH
Confidence 0000 112345566778888888887765434555556666666678888888877665432111 01133466667
Q ss_pred HHHHhCCChHHHHHHHHHHHhCCCc
Q 005305 543 NIYNSSGKLKEAAEVIRTLRRKGLR 567 (703)
Q Consensus 543 ~~y~~~g~~~~A~~~~~~m~~~~~~ 567 (703)
..+++.-.++.+.-.--...|.++.
T Consensus 484 ~~~a~~~~v~~~lv~ai~rqES~f~ 508 (644)
T PRK11619 484 RRYTSGKGIPQSYAMAIARQESAWN 508 (644)
T ss_pred HHHHHHcCCCHHHHHHHHHHhcCCC
Confidence 7777666677665433333355543
No 325
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=72.37 E-value=18 Score=33.83 Aligned_cols=74 Identities=14% Similarity=0.001 Sum_probs=47.1
Q ss_pred hcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC----CcchHHHHHHHHHhCCChHHH
Q 005305 481 REGLLDEAFALIRGAPFKT--TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE----KLSNYVVLLNIYNSSGKLKEA 554 (703)
Q Consensus 481 ~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~A 554 (703)
|.|+ ++|.+.|-.+.-.| +......-+..|....|.++++.++-+.+++.+. |+..+..|+.+|.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444 45666655543322 3334444555555677788888887777754422 467888888888888888887
Q ss_pred H
Q 005305 555 A 555 (703)
Q Consensus 555 ~ 555 (703)
.
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 5
No 326
>PRK10941 hypothetical protein; Provisional
Probab=72.09 E-value=16 Score=36.15 Aligned_cols=62 Identities=19% Similarity=0.106 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
..+.|-.++.+.++++.|.++.+.++.+.|+++.-+---+-+|.+.|.+..|..=++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 45677778899999999999999999999999988888999999999999999988877654
No 327
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.42 E-value=74 Score=34.84 Aligned_cols=145 Identities=12% Similarity=-0.002 Sum_probs=97.4
Q ss_pred CCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHH
Q 005305 73 NKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKR 151 (703)
Q Consensus 73 ~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 151 (703)
++++.| -.++..+|.. .-+.+.. +.+.|..++|+++- ..|| .-|.. ..+.|+++.|.+
T Consensus 600 rd~~~a---~~vLp~I~k~-----~rt~va~Fle~~g~~e~AL~~s--------~D~d-~rFel----al~lgrl~iA~~ 658 (794)
T KOG0276|consen 600 RDLEVA---DGVLPTIPKE-----IRTKVAHFLESQGMKEQALELS--------TDPD-QRFEL----ALKLGRLDIAFD 658 (794)
T ss_pred cccccc---ccccccCchh-----hhhhHHhHhhhccchHhhhhcC--------CChh-hhhhh----hhhcCcHHHHHH
Confidence 777877 6666666632 3466677 88888888888751 1222 22222 346789998888
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCCh
Q 005305 152 VFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGS 231 (703)
Q Consensus 152 l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 231 (703)
+..+. .+..-|..|-++..+.|++..|.+.|.... -|..|+-.+...|+.+.-..+-....+.|..
T Consensus 659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-----d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~--- 724 (794)
T KOG0276|consen 659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR-----DLGSLLLLYTSSGNAEGLAVLASLAKKQGKN--- 724 (794)
T ss_pred HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc-----chhhhhhhhhhcCChhHHHHHHHHHHhhccc---
Confidence 76653 456789999999999999999999997553 3667777777888866555555555554432
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHH
Q 005305 232 RTFATMIRASAGLELISVGKQLHS 255 (703)
Q Consensus 232 ~t~~~ll~a~~~~~~~~~a~~~~~ 255 (703)
+...-++...|+++++.+++-
T Consensus 725 ---N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 725 ---NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred ---chHHHHHHHcCCHHHHHHHHH
Confidence 233344556788888877764
No 328
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.96 E-value=56 Score=26.67 Aligned_cols=61 Identities=21% Similarity=0.306 Sum_probs=44.3
Q ss_pred hhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHH
Q 005305 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLA 438 (703)
Q Consensus 375 ~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 438 (703)
..+...|++++|..+.+....||+..|-++-.. +.|..+++..-+.+|..+| .|...+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 345668999999999999888999999877543 5677777777777777665 555555543
No 329
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.24 E-value=31 Score=24.49 Aligned_cols=50 Identities=14% Similarity=0.061 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHHHcCc
Q 005305 538 YVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGY 613 (703)
Q Consensus 538 ~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 613 (703)
...++-++.+.|++++|.+..+.+.+. .|...+..+.-..+.++|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778899999999999999998753 34445555555566677777763
No 330
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.18 E-value=1.2e+02 Score=30.17 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCCC---CcccHHHHHHHHHHcCCcHHHHHHHHHHHH-----CCCCCCHh
Q 005305 268 VSCALIDMYSKCGSIEDAQGVFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEMRD-----SGVKMDHF 333 (703)
Q Consensus 268 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~ 333 (703)
+.+.....|..+|.+.+|..+.++...- +...|-.++..++..|+--.|.+-+++|.+ .|+..|..
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vdds 354 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDS 354 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchh
Confidence 3455667899999999999998887653 456788999999999998888888887743 45555543
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=69.75 E-value=5.9 Score=24.23 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 537 NYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 537 ~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998764
No 332
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.22 E-value=40 Score=35.59 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=70.4
Q ss_pred hcCCHHHH-HHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHH
Q 005305 410 NHGRGEEA-VELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488 (703)
Q Consensus 410 ~~g~~~~A-~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 488 (703)
..|+.-.| .++|.-+....-.|+.+-+.+.+ ..+.|+++.+.+.+....+ -+.....+..+++...-+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 35665544 34555555555556665554444 4677788887777766644 3445555666777777777777777
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 489 FALIRGAPF--KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 489 ~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
..+-..|-. -.++.+...........|-++++...+++++.+.|.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 777665421 113333333333445556666666666666666654
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=69.22 E-value=36 Score=31.81 Aligned_cols=73 Identities=14% Similarity=0.040 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHc---CCCCchHHHHHHHhhHHhcCCHHHHH
Q 005305 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH---GFGLDIVANSALVDFYSKWGRIEDAR 387 (703)
Q Consensus 314 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~Li~~y~k~g~~~~A~ 387 (703)
++|++.|-++...+.--++.....+. .+-...+.+++.+++-.++.. +-.+|+.++.+|+..|.+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALA-TYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 55666666665554333333332222 333345566666666555542 22456777777777777777777664
No 334
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.10 E-value=26 Score=36.94 Aligned_cols=130 Identities=13% Similarity=0.129 Sum_probs=83.8
Q ss_pred HhcCCHHHHH-HHhhhcC----cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHH
Q 005305 378 SKWGRIEDAR-HVFDKML----CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERG 452 (703)
Q Consensus 378 ~k~g~~~~A~-~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 452 (703)
...|++-.|- ++|+.+. .|+.+...+. .+...|+++.+.+.+...... +.....|...++....+.|.+++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3457766654 4444442 3454444433 456789999999988776543 455668889999999999999999
Q ss_pred HHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 005305 453 WEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACR 512 (703)
Q Consensus 453 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~ 512 (703)
...-+.|..+ .++ +++........--..|-++++.-.+++. .+ +|...-|...++...
T Consensus 377 ~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~ 436 (831)
T PRK15180 377 LSTAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQ 436 (831)
T ss_pred HHHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccce
Confidence 9998888762 332 3333322222333567889999888874 22 455556766666543
No 335
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.52 E-value=50 Score=29.15 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=53.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCC---------CCcccHHHHHHHHHhCCC-hhHHHHHHHHhHHcCCCCChhhHHHH
Q 005305 168 RNRVLLMHVRCGMMIDARRLFDEMPE---------RNLVSCNMIIAGMIDSGD-YLEAFLLFLDLWEEFSDCGSRTFATM 237 (703)
Q Consensus 168 ~~~Li~~y~~~g~~~~A~~~f~~m~~---------~d~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~l 237 (703)
.|.++...+..+.+.-...+++.+.- .+-.+|++++.+.++..- ---+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35555555555566555555554431 456678888888866655 34567788888887888888889999
Q ss_pred HHHHhcC
Q 005305 238 IRASAGL 244 (703)
Q Consensus 238 l~a~~~~ 244 (703)
+++|.+-
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 9888764
No 336
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=67.22 E-value=12 Score=21.89 Aligned_cols=28 Identities=21% Similarity=0.113 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhCCCC
Q 005305 505 AALLTACRVNGNLELGKFAAEKLYGMEP 532 (703)
Q Consensus 505 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p 532 (703)
..+...+...|+.+.|...+++.++..|
T Consensus 5 ~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 5 YNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3444444455555555555555554444
No 337
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=66.76 E-value=66 Score=33.61 Aligned_cols=64 Identities=11% Similarity=0.190 Sum_probs=50.8
Q ss_pred CHHHHHHH---HHHHHHcCChhHHHHHHHHHhCCCCC-CcchHHHHHHHHH-hCCChHHHHHHHHHHHh
Q 005305 500 TKNMWAAL---LTACRVNGNLELGKFAAEKLYGMEPE-KLSNYVVLLNIYN-SSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 500 ~~~~~~~l---l~a~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~-~~g~~~~A~~~~~~m~~ 563 (703)
|...|.++ +....+.|-+..|.+..+-++.++|. |+-.-..+++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44444444 45667889999999999999999999 8888888899886 67888878888777654
No 338
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.31 E-value=2.2e+02 Score=31.79 Aligned_cols=116 Identities=16% Similarity=0.053 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHhCCCCcHHHH--HHHHHH-HHhCCCHHHHHHHHhhcCC--------CCcccHHHHHHHHHHcC----
Q 005305 247 ISVGKQLHSCALKMGFGDNVFVS--CALIDM-YSKCGSIEDAQGVFDEMSE--------KTTVGWNTIIAGYALHG---- 311 (703)
Q Consensus 247 ~~~a~~~~~~~~~~g~~~~~~~~--~~Li~~-y~~~g~~~~A~~~f~~m~~--------~~~~~~~~li~~~~~~g---- 311 (703)
...+.+.++...+.|. ...... ...... +....+.+.|...|....+ -+..+...+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~-~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH-SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhcc-hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 3456666776666652 111111 112222 3455677777777776643 13445666666776643
Q ss_pred -CcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHcCCC
Q 005305 312 -YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR-LASLEHAKQAHAGLVRHGFG 364 (703)
Q Consensus 312 -~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~ 364 (703)
+.+.|+.+|.+.-+.| .|+...+...+.-... -.+...|.++|..+.+.|..
T Consensus 307 ~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~ 360 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI 360 (552)
T ss_pred ccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh
Confidence 5566888888777776 4455444443333333 24567788888888777743
No 339
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=66.11 E-value=9.2 Score=27.12 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=23.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHhCCCCCCcc
Q 005305 507 LLTACRVNGNLELGKFAAEKLYGMEPEKLS 536 (703)
Q Consensus 507 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 536 (703)
+.-|+.+.|+++.|++..+.+++++|+|..
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 456788999999999999999999999754
No 340
>PRK12798 chemotaxis protein; Reviewed
Probab=65.75 E-value=1.8e+02 Score=30.59 Aligned_cols=180 Identities=17% Similarity=0.229 Sum_probs=116.3
Q ss_pred cCCHHHHHHHhhhcCc----CChhhHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHccCCHH
Q 005305 380 WGRIEDARHVFDKMLC----KNVISWNALIAGYG-NHGRGEEAVELFEQMLLNGMRPNH----VTFLAVLSACSRSGLSE 450 (703)
Q Consensus 380 ~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~ 450 (703)
.|+.++|.+.+..+.. +....+-+|+.+-. ...+..+|+++|++..- ..|.. ..+..-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6889999999888843 34556777776544 45579999999999876 35544 34444455678889999
Q ss_pred HHHHHHHHhHhhcCCCCchHHHHH-HHHHHHhc---CChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 005305 451 RGWEIFQSMSRDHKIKPRAMHYAC-MIELLGRE---GLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEK 526 (703)
Q Consensus 451 ~a~~~~~~m~~~~~~~p~~~~~~~-li~~~~~~---g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 526 (703)
++..+-....+.+.-.|=...|.. ++.++.+. -..+.-.+++..|.-.--...|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 887776666554555554433332 23333333 23344455566664322345888888888999999999999999
Q ss_pred HhCCCCCCcchHHHHHHHHHhC-----CChHHHHHHHHHHH
Q 005305 527 LYGMEPEKLSNYVVLLNIYNSS-----GKLKEAAEVIRTLR 562 (703)
Q Consensus 527 ~~~~~p~~~~~~~~l~~~y~~~-----g~~~~A~~~~~~m~ 562 (703)
+..+.+. ...-...+.+|... .+.++|.+.++.+.
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~ 322 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID 322 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC
Confidence 9877644 33444555555433 45666766665544
No 341
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=65.16 E-value=28 Score=28.14 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=29.6
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 005305 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528 (703)
Q Consensus 492 ~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 528 (703)
+-.+-.-|++.+..+.+.||++.+|+..|.+.++-+.
T Consensus 33 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 33 LFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3345567888888889999999999999998888665
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=64.25 E-value=13 Score=21.70 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=12.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHh
Q 005305 270 CALIDMYSKCGSIEDAQGVFD 290 (703)
Q Consensus 270 ~~Li~~y~~~g~~~~A~~~f~ 290 (703)
..|...+...|+.++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666554
No 343
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.13 E-value=1.3e+02 Score=27.55 Aligned_cols=122 Identities=14% Similarity=0.142 Sum_probs=77.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH--HHHhcCC
Q 005305 408 YGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE--LLGREGL 484 (703)
Q Consensus 408 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~--~~~~~g~ 484 (703)
+++.+..++|+.-|.++.+.|...-. .............|+...|...|+++-++..++.-..-..-|-. ++...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45677788899999988887655322 12222334456788888999999988765433222212222222 3456788
Q ss_pred hHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHhC
Q 005305 485 LDEAFALIRGAPFKTTK---NMWAALLTACRVNGNLELGKFAAEKLYG 529 (703)
Q Consensus 485 ~~~A~~~~~~m~~~p~~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 529 (703)
+++.....+.+..+.++ ..-.+|.-+-.+.|++..|...|.++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88887777765433232 2345666677788899999888888875
No 344
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=62.05 E-value=30 Score=28.26 Aligned_cols=50 Identities=22% Similarity=0.213 Sum_probs=30.9
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHH
Q 005305 493 RGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542 (703)
Q Consensus 493 ~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 542 (703)
-.+-.-|++.+..+.|.||++.+++..|.+.++-+...-.+....|-.++
T Consensus 37 ~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 37 FGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp TTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred hccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 34555788888888899999999999999888877632222223554443
No 345
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=61.29 E-value=44 Score=29.00 Aligned_cols=49 Identities=14% Similarity=0.109 Sum_probs=31.8
Q ss_pred CChhHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 515 GNLELGKFAAEKLYG-MEPEK-LSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 515 g~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.++.++..+++.+++ -.|+. ......|+-.+.+.|+++.+.++.+...+
T Consensus 49 ~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 49 EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 345677777777775 33442 23334566667788888888888877764
No 346
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.09 E-value=1.7e+02 Score=28.67 Aligned_cols=237 Identities=16% Similarity=0.206 Sum_probs=132.7
Q ss_pred CCCHHHHHHHHhhcCC----C---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHC---CC--CCCHhhHHHHHHHHhccC
Q 005305 279 CGSIEDAQGVFDEMSE----K---TTVGWNTIIAGYALHGYSEEALDLYYEMRDS---GV--KMDHFTFSMIIRICTRLA 346 (703)
Q Consensus 279 ~g~~~~A~~~f~~m~~----~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~pd~~t~~~ll~a~~~~~ 346 (703)
..+.++|..-|.+..+ + .-.+...||..+.+.|++++.++.+++|..- .+ .-...+.++++.-.+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456667766666542 1 1123445777788888888888888877531 11 123456677777666666
Q ss_pred CHHHHHHHHHHHHHc-----CCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc--------CC-------hhhHHHHHH
Q 005305 347 SLEHAKQAHAGLVRH-----GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--------KN-------VISWNALIA 406 (703)
Q Consensus 347 ~~~~a~~~~~~~~~~-----g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--------~~-------~~~~~~li~ 406 (703)
+.+.-..+++--++. +-..--.+-+.|...|...|.+.+-.+++.++.. .| ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666555555443321 1111122445677778888888877777777621 11 235666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHH-----ccCCHHHHHHHHHHhHhhcCCCCch-----HHHHHH
Q 005305 407 GYGNHGRGEEAVELFEQMLLNG-MRPNHVTFLAVLSACS-----RSGLSERGWEIFQSMSRDHKIKPRA-----MHYACM 475 (703)
Q Consensus 407 ~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~l 475 (703)
.|..+++-.+-..++++.+.-. .-|-+ ....++.-|. +.|.+++|-.=|-++-+.+.-.-++ --|-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8888888777777887766422 22333 3445666664 4577777654433333323322222 234455
Q ss_pred HHHHHhcCC----hHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChhHHHHH
Q 005305 476 IELLGREGL----LDEAFALIRGAPF--KTTKNMWAALLTACRVNGNLELGKFA 523 (703)
Q Consensus 476 i~~~~~~g~----~~~A~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~a~~~ 523 (703)
.+++.+.|- -.+| -|. .|.....+.|+.+|..+ +..+-+++
T Consensus 279 ANMLmkS~iNPFDsQEA------KPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~I 325 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEA------KPYKNDPEILAMTNLVAAYQNN-DIIEFERI 325 (440)
T ss_pred HHHHHHcCCCCCccccc------CCCCCCHHHHHHHHHHHHHhcc-cHHHHHHH
Confidence 677776651 1222 133 34556778888888654 44433333
No 347
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=60.55 E-value=73 Score=34.62 Aligned_cols=56 Identities=18% Similarity=0.148 Sum_probs=32.6
Q ss_pred HHHHhhHHhcCCHHHHHHHhhhcCcC--Chhh---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 371 SALVDFYSKWGRIEDARHVFDKMLCK--NVIS---WNALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 371 ~~Li~~y~k~g~~~~A~~~f~~m~~~--~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
..|+.-|.+++++++|..++..|.-. .... .+.+.+.+.+..-.++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 35677888999999999998888432 1222 33334444444434445555555443
No 348
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.14 E-value=2.5e+02 Score=30.21 Aligned_cols=145 Identities=17% Similarity=0.123 Sum_probs=88.9
Q ss_pred hHHHHHHHccCCCCCcc----------cHHHHHHHHHhCCChhHHHHHHHHhHHcC-CCCC--hh-----hHHHHH-HHH
Q 005305 181 MIDARRLFDEMPERNLV----------SCNMIIAGMIDSGDYLEAFLLFLDLWEEF-SDCG--SR-----TFATMI-RAS 241 (703)
Q Consensus 181 ~~~A~~~f~~m~~~d~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~--~~-----t~~~ll-~a~ 241 (703)
.|+|+...++.++.|.. ....++..-.-.|++.+|++-..+|.+-- -.|. -. ....++ .-|
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 34555555566665521 12223333455799999999999997632 1222 11 122222 234
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCcH--HHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHH--------HHHH--HH
Q 005305 242 AGLELISVGKQLHSCALKMGFGDNV--FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI--------IAGY--AL 309 (703)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l--------i~~~--~~ 309 (703)
...+.++.|+.-|..+.+.--..|. ..-..+.-.|.+.|+.+.-.++.+.+..++..++.+- +.|+ ..
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 5668899999888887776433443 3345567789999999999999999887766554331 1111 24
Q ss_pred cCCcHHHHHHHHHHHH
Q 005305 310 HGYSEEALDLYYEMRD 325 (703)
Q Consensus 310 ~g~~~~A~~l~~~m~~ 325 (703)
.+++.||...+++-.+
T Consensus 458 qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLK 473 (629)
T ss_pred hccHHHHHHHHHHHHh
Confidence 6778888877776554
No 349
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.71 E-value=1.7e+02 Score=28.34 Aligned_cols=162 Identities=15% Similarity=0.068 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005305 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN 427 (703)
Q Consensus 348 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (703)
.+++..+.+++.+. .--+..++--..+|..+|.++.|-..+++.-+ ...+-++++|+++|++...-
T Consensus 74 yEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralav 139 (308)
T KOG1585|consen 74 YEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAV 139 (308)
T ss_pred HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHH
Confidence 34444444444432 12234566667778888887777666554311 12344566666666665431
Q ss_pred CC--CcCH---HHHHHHHHHHHccCCHHHHHHHHHHhHh---hcCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHh---C
Q 005305 428 GM--RPNH---VTFLAVLSACSRSGLSERGWEIFQSMSR---DHKIKPR-AMHYACMIELLGREGLLDEAFALIRG---A 495 (703)
Q Consensus 428 g~--~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~---m 495 (703)
=. .-+. .-+..+-..+.+...+++|-..|..-.. ...--|+ -..|.+.|-.|.-..++..|...++. .
T Consensus 140 ve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 140 VEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 00 0011 1222333444555566665544432211 0001112 12344555566667788889888887 3
Q ss_pred CC---CCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005305 496 PF---KTTKNMWAALLTACRVNGNLELGKFAA 524 (703)
Q Consensus 496 ~~---~p~~~~~~~ll~a~~~~g~~~~a~~~~ 524 (703)
|- ..+..+...||.+| ..|+.++...+.
T Consensus 220 p~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 220 PAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred ccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 32 22456777777776 456666655543
No 350
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.19 E-value=2.3e+02 Score=29.59 Aligned_cols=92 Identities=12% Similarity=0.011 Sum_probs=54.3
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHH-hcCChHHHHHHHHhCCC--CCC------HHHHHHHHHH
Q 005305 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG-REGLLDEAFALIRGAPF--KTT------KNMWAALLTA 510 (703)
Q Consensus 440 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~--~p~------~~~~~~ll~a 510 (703)
+....+.|-+..|.++-+-+.. ....-|+...-.+||.|+ ++++++--+++++.... ..+ ...|+..+.-
T Consensus 110 i~~L~~RG~~rTAlE~~KlLls-Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLS-LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh-cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 3456777888888887777654 232224555666777776 77777777777665322 111 1234333333
Q ss_pred HHHcCCh---------------hHHHHHHHHHhCCCCC
Q 005305 511 CRVNGNL---------------ELGKFAAEKLYGMEPE 533 (703)
Q Consensus 511 ~~~~g~~---------------~~a~~~~~~~~~~~p~ 533 (703)
+. .++. +.|...+.+++..-|.
T Consensus 189 ~~-l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 189 FR-LEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HH-hcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 33 3333 6777777777766664
No 351
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=58.94 E-value=3.1e+02 Score=31.05 Aligned_cols=192 Identities=6% Similarity=-0.052 Sum_probs=99.6
Q ss_pred hhhhhhhccccccCCCCcccchhhcccccCccCCCCCcccHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCChh----
Q 005305 58 ECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK--LVLNKRYREALELFEILEFEGGFDVGSS---- 131 (703)
Q Consensus 58 ~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~--~~~~g~~~~A~~l~~~m~~~~~~~p~~~---- 131 (703)
++.-|..||.+-.+|-... .+-|.--|.. +..+.--+.. +-...++++|...+++..... -+++-.
T Consensus 29 ~l~~Y~kLI~~ai~CL~~~-----~~~~~l~p~~--ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~-~~~~~~d~k~ 100 (608)
T PF10345_consen 29 QLKQYYKLIATAIKCLEAV-----LKQFKLSPRQ--EARVRLRLASILLEETENLDLAETYLEKAILLC-ERHRLTDLKF 100 (608)
T ss_pred hHHHHHHHHHHHHHHHHHH-----hccCCCCHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cccchHHHHH
Confidence 5566778888777653221 1111111222 4445555566 457788999999998776543 222221
Q ss_pred -hHHHHHHHHhccCChHHHHHHHHHHHHhC--CCCC--cchHHHH-HHHHHhCCChHHHHHHHccCCC-------CCccc
Q 005305 132 -TYDALISACIGLRSIREVKRVFSYMLSTG--FEPD--LYMRNRV-LLMHVRCGMMIDARRLFDEMPE-------RNLVS 198 (703)
Q Consensus 132 -t~~~ll~~~~~~~~~~~a~~l~~~~~~~g--~~~~--~~~~~~L-i~~y~~~g~~~~A~~~f~~m~~-------~d~~~ 198 (703)
....+++.+.+.+... |.+..+..++.- .... ...+.-+ +..+...++...|.+.++.+.. +-+..
T Consensus 101 ~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 101 RCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred HHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 1223445555555444 888887776532 1111 1222223 2333334788888888876543 22233
Q ss_pred HHHHHHHHH--hCCChhHHHHHHHHhHHcCC---------CCChhhHHHHHHHHh--cCCChHHHHHHHHHHH
Q 005305 199 CNMIIAGMI--DSGDYLEAFLLFLDLWEEFS---------DCGSRTFATMIRASA--GLELISVGKQLHSCAL 258 (703)
Q Consensus 199 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~---------~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~ 258 (703)
.-.++.+.. +.+.++++++..+++..... .|--.+|..++..|. ..|++..+++.+.++.
T Consensus 180 ~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 180 LASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333444433 44666777777776633221 223345556665554 4566666665555443
No 352
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=58.82 E-value=2.6e+02 Score=30.14 Aligned_cols=75 Identities=12% Similarity=0.008 Sum_probs=45.0
Q ss_pred CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHH
Q 005305 94 SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNR 170 (703)
Q Consensus 94 ~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~ 170 (703)
|+-.|..-+. +.+.+.+.+.-.+|..|....+-.||.-.+.+.= -+-...+++.|+.++...++.. +.++..|-.
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~saRalflrgLR~n-pdsp~Lw~e 179 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESARALFLRGLRFN-PDSPKLWKE 179 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHHHHHHHHHhhcC-CCChHHHHH
Confidence 7778888888 5555558888888888887652334433332221 1223334788888888777654 233344433
No 353
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=58.60 E-value=35 Score=33.70 Aligned_cols=60 Identities=10% Similarity=0.051 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
.++....+|...|.+.+|.++.++.+.++|-+...|-.|...|+..|+--+|.+-+++|.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344556788899999999999999999999999999999999999999888888777775
No 354
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.02 E-value=18 Score=24.50 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 539 VVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 539 ~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
..|+.+|...|+.+.|.+++++....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357889999999999999999987543
No 355
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.84 E-value=1.4e+02 Score=26.39 Aligned_cols=50 Identities=14% Similarity=0.232 Sum_probs=27.1
Q ss_pred ChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHcc
Q 005305 397 NVISWNALIAGYGNHGR-GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446 (703)
Q Consensus 397 ~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 446 (703)
+-.+|.+++.+.++..- ---+..+|.-|.+.+.+++..-|..++.+|.+-
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 34455566655544333 223455666666555666666666666665543
No 356
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=56.60 E-value=1.2e+02 Score=25.28 Aligned_cols=80 Identities=11% Similarity=0.037 Sum_probs=48.4
Q ss_pred CChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005305 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324 (703)
Q Consensus 245 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 324 (703)
..-++|..|.+.+...+- ....+.-.-+..+.+.|++++|...=.....||.+.|-++-. .+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345667777776666552 333344444556677888888855555556678888877655 46777777777777776
Q ss_pred HCC
Q 005305 325 DSG 327 (703)
Q Consensus 325 ~~g 327 (703)
..|
T Consensus 97 ~~g 99 (116)
T PF09477_consen 97 SSG 99 (116)
T ss_dssp T-S
T ss_pred hCC
Confidence 554
No 357
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=56.52 E-value=12 Score=22.78 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=18.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 507 LLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 507 ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
+..++...|+.++|...+++++...|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445556677777777777777766665
No 358
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=56.07 E-value=69 Score=27.39 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 416 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
+..+-++.+....+-|+.......|.||.+.+++..|.++|+.++.+ ..+....|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 44555666667778999999999999999999999999999988763 4444446666554
No 359
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=55.80 E-value=27 Score=27.99 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=31.6
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 522 FAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 522 ~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
..+++.++.+|+|...-..++..|...|++++|.+.+-.+.++.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34555666788888888888888888888888888887777544
No 360
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=55.36 E-value=2.3e+02 Score=28.32 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 005305 401 WNALIAGYGNHGRGEEAVELFEQM 424 (703)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~l~~~m 424 (703)
|+. ...+-+.+++++|.+.|+-.
T Consensus 250 W~~-~~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 250 WNK-GKKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHH-HHHHHhhcCHHHHHHHHHHH
Confidence 444 23344577888888888743
No 361
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=55.28 E-value=2e+02 Score=27.71 Aligned_cols=147 Identities=14% Similarity=0.178 Sum_probs=82.5
Q ss_pred HHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHH
Q 005305 272 LIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351 (703)
Q Consensus 272 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 351 (703)
-+..|.+.-++.-|...++.+.+| ..+--+++ -|.+..+.+--.++.+-....+++-+...+..++ +...|+..+|
T Consensus 136 tMEiyS~ttRFalaCN~s~KIiEP-IQSRCAiL-Rysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQa 211 (333)
T KOG0991|consen 136 TMEIYSNTTRFALACNQSEKIIEP-IQSRCAIL-RYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQA 211 (333)
T ss_pred HHHHHcccchhhhhhcchhhhhhh-HHhhhHhh-hhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHH
Confidence 456677777777776666666654 11222222 2333333322233333334455555554444443 3455666666
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 005305 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431 (703)
Q Consensus 352 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 431 (703)
...++.-... + | +-.+..+|.-..+|.+.....|+..+. .+++++|.+++.++-+.|..|
T Consensus 212 lNnLQst~~g-~-----------------g-~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 212 LNNLQSTVNG-F-----------------G-LVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHHHHHhcc-c-----------------c-ccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCH
Confidence 5544433221 1 1 123455676667777777777777655 467999999999999999998
Q ss_pred CHHHHHHHHHHH
Q 005305 432 NHVTFLAVLSAC 443 (703)
Q Consensus 432 ~~~t~~~ll~a~ 443 (703)
.... +++..++
T Consensus 272 ~Dii-~~~FRv~ 282 (333)
T KOG0991|consen 272 EDII-TTLFRVV 282 (333)
T ss_pred HHHH-HHHHHHH
Confidence 7632 3344444
No 362
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=54.74 E-value=3.1e+02 Score=29.72 Aligned_cols=162 Identities=14% Similarity=0.128 Sum_probs=78.9
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcC--cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKML--CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 443 (703)
|....-++++.+...-..+-.+.+..+|. ..+-..+-.++..|..+ ..++-..+|+++.+. .-|.+.+..-|.-+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHH
Confidence 44445556666666555555555555553 23445566666666666 445566666666653 33444444444444
Q ss_pred HccCCHHHHHHHHHHhHhhcCCCCc------hHHHHHHHHHHHhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHH
Q 005305 444 SRSGLSERGWEIFQSMSRDHKIKPR------AMHYACMIELLGREGLLDEAFALIRGA----PFKTTKNMWAALLTACRV 513 (703)
Q Consensus 444 ~~~g~~~~a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~a~~~ 513 (703)
...++.+.+..+|..+.. .+-|. .+.|.-++..-+ .+.+.-+.+..++ +...-.+.+.-+-.-|..
T Consensus 142 yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 142 YEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 444666666666665543 22221 223444333211 2233333333222 222222333333344555
Q ss_pred cCChhHHHHHHHHHhCCCCCC
Q 005305 514 NGNLELGKFAAEKLYGMEPEK 534 (703)
Q Consensus 514 ~g~~~~a~~~~~~~~~~~p~~ 534 (703)
..+++++.++.+.+++.+..|
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchh
Confidence 566666666666666555444
No 363
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=54.32 E-value=33 Score=31.38 Aligned_cols=46 Identities=24% Similarity=0.174 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC----hHHHHHHHHHHH
Q 005305 517 LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK----LKEAAEVIRTLR 562 (703)
Q Consensus 517 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~----~~~A~~~~~~m~ 562 (703)
+++|..-+++++.++|+...++.+++++|...|. -.+|.+.|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4567777888999999999999999999987664 345555555543
No 364
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=53.78 E-value=46 Score=31.49 Aligned_cols=62 Identities=19% Similarity=0.135 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC
Q 005305 473 ACMIELLGREGLLDEAFALIRG-APFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534 (703)
Q Consensus 473 ~~li~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 534 (703)
+.-+..+.+.+.+.+|+...+. ...+| |...-..++..++..|++++|..-++-.-.+.|++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 4445667788888888887764 45556 44456677888889999999988888888888875
No 365
>PRK13342 recombination factor protein RarA; Reviewed
Probab=52.32 E-value=3.2e+02 Score=29.16 Aligned_cols=99 Identities=11% Similarity=0.013 Sum_probs=55.3
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhc---CCCCcccHHHHH
Q 005305 228 DCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM---SEKTTVGWNTII 304 (703)
Q Consensus 228 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m---~~~~~~~~~~li 304 (703)
..+......++..+ .|+...+..+++.+...+-..+ .+...+++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 34444444444443 5777777777766654321111 12222222221 122223345555
Q ss_pred HHHHH---cCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc
Q 005305 305 AGYAL---HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR 344 (703)
Q Consensus 305 ~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 344 (703)
+++.+ .++++.|+..+..|.+.|..|....-..+..++-.
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 55554 58899999999999999988876655555555433
No 366
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.04 E-value=4.2e+02 Score=30.17 Aligned_cols=182 Identities=18% Similarity=0.275 Sum_probs=108.0
Q ss_pred cHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhh----------HHHHHHHHhccCCHHHHHHHHHHHHHc-C-CCCc
Q 005305 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFT----------FSMIIRICTRLASLEHAKQAHAGLVRH-G-FGLD 366 (703)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t----------~~~ll~a~~~~~~~~~a~~~~~~~~~~-g-~~~~ 366 (703)
+-..++-.|....+++..+++.+.++.. ||..- |...++-=-+-|+-+.|....--+++. | +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 3455666778888888888888888763 44332 223333333456667776665555542 2 223
Q ss_pred hHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH---HHHHHHHHH
Q 005305 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV---TFLAVLSAC 443 (703)
Q Consensus 367 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~ 443 (703)
++||-||++- ..|- +-+.|...+..+.|.+.|++.-+ +.|+.. -+..||.+-
T Consensus 279 --------Dm~Cl~GRIY------KDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 279 --------DMYCLCGRIY------KDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred --------ceeeeechhh------hhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 4677777543 2221 11234455566778888888776 577663 344444432
Q ss_pred HccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 005305 444 SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFA 523 (703)
Q Consensus 444 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~ 523 (703)
.+ .++...++ .. .--.|-.+++|.|.+++-.+.++ +. ..+.+-.-.+++.+|.++
T Consensus 334 G~--~Fens~El----q~---------IgmkLn~LlgrKG~leklq~YWd-------V~---~y~~asVLAnd~~kaiqA 388 (1226)
T KOG4279|consen 334 GE--HFENSLEL----QQ---------IGMKLNSLLGRKGALEKLQEYWD-------VA---TYFEASVLANDYQKAIQA 388 (1226)
T ss_pred hh--hccchHHH----HH---------HHHHHHHHhhccchHHHHHHHHh-------HH---HhhhhhhhccCHHHHHHH
Confidence 22 11211111 11 11134456789999988877763 22 345566678899999999
Q ss_pred HHHHhCCCCCC
Q 005305 524 AEKLYGMEPEK 534 (703)
Q Consensus 524 ~~~~~~~~p~~ 534 (703)
.+.++++.|..
T Consensus 389 ae~mfKLk~P~ 399 (1226)
T KOG4279|consen 389 AEMMFKLKPPV 399 (1226)
T ss_pred HHHHhccCCce
Confidence 99999999874
No 367
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=50.78 E-value=53 Score=31.56 Aligned_cols=79 Identities=13% Similarity=0.033 Sum_probs=54.9
Q ss_pred ChHHHHHHHHh-CCCCCCHHH-HHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 484 LLDEAFALIRG-APFKTTKNM-WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 484 ~~~~A~~~~~~-m~~~p~~~~-~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
+++.|..-+.+ +...|++.+ |+.=+..+.+..+++....-.++++++.|+..-....|.........+++|...+++.
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34444443332 345666643 4444555566777888888888888888887777888888888888888888888776
Q ss_pred H
Q 005305 562 R 562 (703)
Q Consensus 562 ~ 562 (703)
.
T Consensus 105 ~ 105 (284)
T KOG4642|consen 105 Y 105 (284)
T ss_pred H
Confidence 3
No 368
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.99 E-value=3.1e+02 Score=29.05 Aligned_cols=78 Identities=18% Similarity=0.096 Sum_probs=36.1
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhh--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcc--hHHHHHHHHHhCC
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSST--YDALISACIGLRSIREVKRVFSYMLSTGFEPDLY--MRNRVLLMHVRCG 179 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~--~~~~Li~~y~~~g 179 (703)
.++.|+.+-+. .+.+.| ..|+... ..+.+..++..|+.+ +.+.+++.|..|+.. .....+...++.|
T Consensus 9 A~~~g~~~iv~----~Ll~~g-~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 9 AILFGELDIAR----RLLDIG-INPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHhCCHHHHH----HHHHCC-CCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 45556554333 333445 5554322 233444445556554 334444555444321 1122344445566
Q ss_pred ChHHHHHHHcc
Q 005305 180 MMIDARRLFDE 190 (703)
Q Consensus 180 ~~~~A~~~f~~ 190 (703)
+.+....+++.
T Consensus 80 ~~~~v~~Ll~~ 90 (413)
T PHA02875 80 DVKAVEELLDL 90 (413)
T ss_pred CHHHHHHHHHc
Confidence 66666665554
No 369
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.66 E-value=1e+02 Score=25.73 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=25.1
Q ss_pred ccHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 005305 298 VGWNTIIAGYALHGYSEEALDLYYEMRD 325 (703)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 325 (703)
.-|..++.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588999999999999999999998876
No 370
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.65 E-value=2.6e+02 Score=29.51 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=33.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHH--ccCCHHHHHHHHHHhHh
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRPNHV--TFLAVLSACS--RSGLSERGWEIFQSMSR 461 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 461 (703)
-..+++..|.++|+++... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3677888888888888876 555443 2333334433 35567788888877655
No 371
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=49.25 E-value=60 Score=30.76 Aligned_cols=51 Identities=14% Similarity=0.050 Sum_probs=24.1
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 005305 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLF 188 (703)
Q Consensus 137 l~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 188 (703)
++.+.+.+++.++.++...-++.. +.|...-..|++.|+-.|++++|..-+
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql 58 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQL 58 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHH
Confidence 333444445555555554444432 333444444555555555555554433
No 372
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.09 E-value=3.5e+02 Score=28.67 Aligned_cols=12 Identities=0% Similarity=0.069 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHc
Q 005305 416 EAVELFEQMLLN 427 (703)
Q Consensus 416 ~A~~l~~~m~~~ 427 (703)
+..+-++.|...
T Consensus 298 ~C~~ei~~mk~~ 309 (413)
T PHA02875 298 KCIIELRRIKSE 309 (413)
T ss_pred HHHHHHHHHHhh
Confidence 344555555553
No 373
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.19 E-value=61 Score=30.29 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCC
Q 005305 499 TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532 (703)
Q Consensus 499 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 532 (703)
|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444444444444444444444444444444
No 374
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.77 E-value=4.4e+02 Score=29.44 Aligned_cols=75 Identities=20% Similarity=0.146 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhc----CCHHHHHHHhhhcCcCC-hhhHHHHHHHHHh------cCCHH
Q 005305 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW----GRIEDARHVFDKMLCKN-VISWNALIAGYGN------HGRGE 415 (703)
Q Consensus 347 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~----g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~------~g~~~ 415 (703)
+.+.+...+......| +......|-+.|..- .+.+.|...+......+ ...|| .+|.. .. ..
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~~~~~~n---lg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQGAQALFN---LGYMHEHGEGIKV-LH 526 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhhhHHHhh---hhhHHhcCcCcch-hH
Confidence 3445555555555444 445556666666543 24666666666554333 11222 23322 23 67
Q ss_pred HHHHHHHHHHHcC
Q 005305 416 EAVELFEQMLLNG 428 (703)
Q Consensus 416 ~A~~l~~~m~~~g 428 (703)
.|.+++++..+.+
T Consensus 527 ~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 527 LAKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHHhcC
Confidence 7888888777643
No 375
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=46.81 E-value=5.8e+02 Score=30.57 Aligned_cols=125 Identities=12% Similarity=0.007 Sum_probs=64.7
Q ss_pred CCHhhHHHHHHHHhccCCHHH-HHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHH-HHhhhcCcCChhhHHHHHHH
Q 005305 330 MDHFTFSMIIRICTRLASLEH-AKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDAR-HVFDKMLCKNVISWNALIAG 407 (703)
Q Consensus 330 pd~~t~~~ll~a~~~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~-~~f~~m~~~~~~~~~~li~~ 407 (703)
+|...-.....++...+..+. +...+..+.+ ++|..+-.+.+..+.+.|..+.+. .+...+.++|...-...+.+
T Consensus 754 ~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~a 830 (897)
T PRK13800 754 ENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARA 830 (897)
T ss_pred CCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHH
Confidence 344444444555555444322 2233333332 345666667777777777654442 23333445555555555666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 408 YGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 408 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
+...+. +++...+..+.+ .|+...-...+.++.+...-..+...+....+
T Consensus 831 L~~l~~-~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 831 LAGAAA-DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHhccc-cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666654 345566655554 45665555666666665333455555555544
No 376
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=46.81 E-value=61 Score=25.15 Aligned_cols=47 Identities=9% Similarity=0.054 Sum_probs=20.7
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCChHHHHHH
Q 005305 445 RSGLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLLDEAFAL 491 (703)
Q Consensus 445 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~ 491 (703)
+....++|...|....+...-.|+ -.+..+|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555444442211121 12344555555555555555444
No 377
>PRK13342 recombination factor protein RarA; Reviewed
Probab=46.01 E-value=4e+02 Score=28.43 Aligned_cols=101 Identities=16% Similarity=0.119 Sum_probs=55.1
Q ss_pred CCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhc---CcCChhhHHHHH
Q 005305 329 KMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKM---LCKNVISWNALI 405 (703)
Q Consensus 329 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m---~~~~~~~~~~li 405 (703)
..+......++..+ .|+...+..+++.+...+...+ .+...+++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44444444444433 5777777777766654311111 12222222211 122223344455
Q ss_pred HHHHh---cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccC
Q 005305 406 AGYGN---HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447 (703)
Q Consensus 406 ~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 447 (703)
+++.+ .++.+.|+..+..|.+.|..|..+.-..+..++-..|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 55554 4789999999999999998887665555555444433
No 378
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=45.99 E-value=27 Score=20.89 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=20.1
Q ss_pred CChhHHHHHHHHHhCCCCCCcchHHHHHH
Q 005305 515 GNLELGKFAAEKLYGMEPEKLSNYVVLLN 543 (703)
Q Consensus 515 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 543 (703)
|+.+.+..++++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 45677777788777777777766666554
No 379
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.52 E-value=3.1e+02 Score=30.14 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=43.0
Q ss_pred HHHHHHcCChhHHHHHHHHHhCCCCC-CcchHHHHHHHHH-hCCChHHHHHHHHHHH
Q 005305 508 LTACRVNGNLELGKFAAEKLYGMEPE-KLSNYVVLLNIYN-SSGKLKEAAEVIRTLR 562 (703)
Q Consensus 508 l~a~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~-~~g~~~~A~~~~~~m~ 562 (703)
+....+.|-+.-|.+..+-++.++|. ||.....+++.|+ ++..++=-+++++...
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34456778889999999999999998 8888888888886 5666776677776663
No 380
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=45.35 E-value=1.8e+02 Score=24.21 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 347 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
..++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 35566666666655442 122232333444566788888854444456678888866543 366777777777776655
Q ss_pred cCCCcCHHHHH
Q 005305 427 NGMRPNHVTFL 437 (703)
Q Consensus 427 ~g~~p~~~t~~ 437 (703)
+| .|....|.
T Consensus 98 ~g-~~~~q~Fa 107 (116)
T PF09477_consen 98 SG-SPELQAFA 107 (116)
T ss_dssp -S-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 44 34444443
No 381
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.26 E-value=3.2e+02 Score=27.04 Aligned_cols=82 Identities=18% Similarity=0.115 Sum_probs=44.3
Q ss_pred CchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005305 365 LDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444 (703)
Q Consensus 365 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 444 (703)
-|+.....+...|.+.|++.+|+.-|-.-.+++...+-.++.-....|...++ |...-.++ --|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaV-L~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAV-LQYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHH-HHHH
Confidence 36778888889999999999998877554444433332233322222322222 22222222 2355
Q ss_pred ccCCHHHHHHHHHHhHh
Q 005305 445 RSGLSERGWEIFQSMSR 461 (703)
Q Consensus 445 ~~g~~~~a~~~~~~m~~ 461 (703)
-.+++..|...++...+
T Consensus 153 ~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTS 169 (260)
T ss_dssp HTTBHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 56778888877776655
No 382
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=45.21 E-value=3.3e+02 Score=27.24 Aligned_cols=63 Identities=13% Similarity=0.075 Sum_probs=31.1
Q ss_pred CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCchHHHHHHHhhHHhcCCHHHHHHHh
Q 005305 328 VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH-GFGLDIVANSALVDFYSKWGRIEDARHVF 390 (703)
Q Consensus 328 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f 390 (703)
-.++..+...+|..++..+++..-.+++...... +...|...|..+|+.-.+.|+..-...+.
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 3445555555555555555555555555544443 33344444444444444444444444443
No 383
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=45.02 E-value=58 Score=22.06 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=13.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 005305 404 LIAGYGNHGRGEEAVELFEQMLLN 427 (703)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~ 427 (703)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555566666666666655543
No 384
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=44.91 E-value=77 Score=29.11 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCCCcCH-HHHHHHHHHHHcc
Q 005305 416 EAVELFEQMLLNGMRPNH-VTFLAVLSACSRS 446 (703)
Q Consensus 416 ~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~ 446 (703)
+|+.=|++.+. +.|+. .++..+..++...
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHH
Confidence 33334444443 56665 5666666665543
No 385
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=44.90 E-value=2.1e+02 Score=28.44 Aligned_cols=86 Identities=9% Similarity=0.126 Sum_probs=41.9
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHH--CCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHh-
Q 005305 303 IIAGYALHGYSEEALDLYYEMRD--SGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK- 379 (703)
Q Consensus 303 li~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k- 379 (703)
=|.+++..|++.+++...-+--+ +.++|.. .-.-|-.|++.+.+....++-..-++.--.-+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 36777788888887765443322 1233332 222333455666655555555444442212222335555554443
Q ss_pred ----cCCHHHHHHHh
Q 005305 380 ----WGRIEDARHVF 390 (703)
Q Consensus 380 ----~g~~~~A~~~f 390 (703)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 35555555443
No 386
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=44.39 E-value=2.3e+02 Score=28.08 Aligned_cols=87 Identities=18% Similarity=0.181 Sum_probs=49.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--cCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHh-
Q 005305 405 IAGYGNHGRGEEAVELFEQMLL--NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR- 481 (703)
Q Consensus 405 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~- 481 (703)
|.+++..+++.+++...-+--+ +.+.|...-. -|-.|++.+......++-....++ .-.-+...|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 5667777777776654433322 1233333222 233467777777777666666552 222233447777766653
Q ss_pred ----cCChHHHHHHHHh
Q 005305 482 ----EGLLDEAFALIRG 494 (703)
Q Consensus 482 ----~g~~~~A~~~~~~ 494 (703)
.|.++||++++..
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 5888888888754
No 387
>PRK11619 lytic murein transglycosylase; Provisional
Probab=43.44 E-value=5.5e+02 Score=29.32 Aligned_cols=125 Identities=8% Similarity=0.015 Sum_probs=70.7
Q ss_pred cCCHHHHHHHHHHHHHc-CCCcCH--HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHH
Q 005305 411 HGRGEEAVELFEQMLLN-GMRPNH--VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487 (703)
Q Consensus 411 ~g~~~~A~~l~~~m~~~-g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 487 (703)
..+.+.|..++...... +..+.. .....+.......+..+++...++.... ...+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 34568888888887543 333333 2333333333333225666666665533 11244444445555558899999
Q ss_pred HHHHHHhCCCC-CCHHHHHHH-HHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHH
Q 005305 488 AFALIRGAPFK-TTKNMWAAL-LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542 (703)
Q Consensus 488 A~~~~~~m~~~-p~~~~~~~l-l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 542 (703)
+...|..|+.. .+..-|.-- ..+....|+.++|...++++.. +. ..|..|+
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~--~fYG~LA 383 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QR--GFYPMVA 383 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CC--CcHHHHH
Confidence 98889888531 122223222 2344557999999999888754 22 3555544
No 388
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=43.13 E-value=46 Score=31.14 Aligned_cols=45 Identities=24% Similarity=0.161 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 518 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
+...+..++.+...|+ +..|..++.++...|+.++|.++.+++..
T Consensus 128 ~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444567777888897 88999999999999999999999998874
No 389
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.11 E-value=3.1e+02 Score=26.39 Aligned_cols=32 Identities=31% Similarity=0.607 Sum_probs=13.9
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005305 481 REGLLDEAFALIRGAPFKTTKNMWAALLTACR 512 (703)
Q Consensus 481 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~ 512 (703)
.+|.+.||..+.+..+.+-....|..++..|.
T Consensus 152 a~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSYPDELRRRLFEQLLEHCL 183 (226)
T ss_pred HcCCHHHHHHHHHhCchhhhHHHHHHHHHHHH
Confidence 34555555555544432111234444444444
No 390
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.84 E-value=19 Score=36.37 Aligned_cols=85 Identities=13% Similarity=0.087 Sum_probs=44.6
Q ss_pred CChHHHHHHHHh-CCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 483 GLLDEAFALIRG-APFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 483 g~~~~A~~~~~~-m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
|.+++|.+.|.. ++..|. ...+.--.+.+.+.++...|++-+..+++++|+...-|-.-..+-...|+|++|...+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 445555555543 222222 222333333444555555566666666666666555555555555556666666666666
Q ss_pred HHhCCCc
Q 005305 561 LRRKGLR 567 (703)
Q Consensus 561 m~~~~~~ 567 (703)
..+.+..
T Consensus 208 a~kld~d 214 (377)
T KOG1308|consen 208 ACKLDYD 214 (377)
T ss_pred HHhcccc
Confidence 6655543
No 391
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=41.20 E-value=77 Score=24.62 Aligned_cols=46 Identities=9% Similarity=0.048 Sum_probs=25.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCCHHHHHHH
Q 005305 410 NHGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERGWEI 455 (703)
Q Consensus 410 ~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 455 (703)
...+.++|+..|....+.-..|.. .++..++.+++..|.+++.+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666654333222 4556666666666666665554
No 392
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=40.90 E-value=2.5e+02 Score=26.16 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=29.3
Q ss_pred HHhcCCHHHHHHHhhhcC------cCChhhHHHHHH-HHHhcCC--HHHHHHHHHHHHH
Q 005305 377 YSKWGRIEDARHVFDKML------CKNVISWNALIA-GYGNHGR--GEEAVELFEQMLL 426 (703)
Q Consensus 377 y~k~g~~~~A~~~f~~m~------~~~~~~~~~li~-~~~~~g~--~~~A~~l~~~m~~ 426 (703)
....|++++|..-++++. ++-...|..+.. +|+.++. +-+|..++.-...
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~ 97 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKD 97 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhc
Confidence 344566777776666652 223445666555 6776664 5567666666554
No 393
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.50 E-value=3.2e+02 Score=25.66 Aligned_cols=87 Identities=13% Similarity=0.039 Sum_probs=43.7
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCc--hHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhh--HHHHHHHHHhcCCHHHH
Q 005305 342 CTRLASLEHAKQAHAGLVRHGFGLD--IVANSALVDFYSKWGRIEDARHVFDKMLCKNVIS--WNALIAGYGNHGRGEEA 417 (703)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A 417 (703)
+...++++.|...++..+...-+.+ ..+--.|.......|..|+|...++....++-.+ ...-...+...|+-++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 4445555555555555543211111 1111223444555666777777666655443222 11122456666777777
Q ss_pred HHHHHHHHHcC
Q 005305 418 VELFEQMLLNG 428 (703)
Q Consensus 418 ~~l~~~m~~~g 428 (703)
..-|.+.++.+
T Consensus 179 r~ay~kAl~~~ 189 (207)
T COG2976 179 RAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHcc
Confidence 77776666654
No 394
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=40.36 E-value=1.8e+02 Score=27.27 Aligned_cols=54 Identities=20% Similarity=0.103 Sum_probs=27.4
Q ss_pred HHHHHhCCCHHHHHHHHhhcCCCCcccHHHH---HHHHHHcCCcHHHHHHHHHHHHC
Q 005305 273 IDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI---IAGYALHGYSEEALDLYYEMRDS 326 (703)
Q Consensus 273 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~ 326 (703)
..++.+.+.++.|.+-.....+-++.--.++ ..+|-+...+++|+.-|+++.+.
T Consensus 141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3344555555555555444443322111112 23566666677777777776664
No 395
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.73 E-value=2.6e+02 Score=27.23 Aligned_cols=54 Identities=7% Similarity=-0.039 Sum_probs=44.6
Q ss_pred HHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 510 ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 510 a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.+...|++-++++....++..+|.|..+|.--+.+.+..=+.++|..=+....+
T Consensus 239 C~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 239 CLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 334678888888888999999999999999888888888888888888877764
No 396
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.63 E-value=1.7e+02 Score=24.43 Aligned_cols=28 Identities=14% Similarity=0.036 Sum_probs=24.2
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHhHH
Q 005305 197 VSCNMIIAGMIDSGDYLEAFLLFLDLWE 224 (703)
Q Consensus 197 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 224 (703)
.-|..|+.-|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588899999999999999999988866
No 397
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.57 E-value=3.3e+02 Score=25.56 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=57.6
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCc--HHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCccc--HHHHHHHHHHcCCc
Q 005305 238 IRASAGLELISVGKQLHSCALKMGFGDN--VFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVG--WNTIIAGYALHGYS 313 (703)
Q Consensus 238 l~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~ 313 (703)
.+.....++++.|+..+...+...-+.+ ..+--.|.......|.+|+|.+.++...+++-.+ ...-...+...|+-
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCch
Confidence 3456667778888777776664321111 1223345666777888888888888877653222 11223467788888
Q ss_pred HHHHHHHHHHHHCC
Q 005305 314 EEALDLYYEMRDSG 327 (703)
Q Consensus 314 ~~A~~l~~~m~~~g 327 (703)
++|..-|.+..+.+
T Consensus 176 ~~Ar~ay~kAl~~~ 189 (207)
T COG2976 176 QEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHcc
Confidence 88888888887764
No 398
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=38.76 E-value=5.1e+02 Score=27.60 Aligned_cols=58 Identities=19% Similarity=0.314 Sum_probs=44.4
Q ss_pred HHHHhhHHhcCCHHHHHHHhhhcCcC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005305 371 SALVDFYSKWGRIEDARHVFDKMLCK---NVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428 (703)
Q Consensus 371 ~~Li~~y~k~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 428 (703)
..|+.-|...|++.+|.+...++.-| ..+.+.+++.+.-+.|+-..-+.++++.-..|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 45777888999999999999987544 45678888888888888776777776665554
No 399
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.10 E-value=1.2e+02 Score=20.91 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=22.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLS 441 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 441 (703)
.+.|-..++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666677777777777777777666665553
No 400
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.78 E-value=86 Score=25.22 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=33.2
Q ss_pred HHcCChhHHHHHHHHHhCCCCCC---------cchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEK---------LSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.+.|++..|...+.+.+...... ..+...++.++...|++++|.+.+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35566666666555554322111 12345677888899999999999988764
No 401
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=37.51 E-value=4.4e+02 Score=26.42 Aligned_cols=57 Identities=9% Similarity=0.115 Sum_probs=35.6
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC-----CCCcccHHHHHHHHHHcCCcHHHHHH
Q 005305 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-----EKTTVGWNTIIAGYALHGYSEEALDL 319 (703)
Q Consensus 263 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~-----~~~~~~~~~li~~~~~~g~~~~A~~l 319 (703)
.++..+....+..+++.+++.+-.++++... ..|...|..+|..-...|+..-...+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki 260 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI 260 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence 4555566666677777777777666666543 23666777777777777775444333
No 402
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=37.37 E-value=6.6e+02 Score=28.47 Aligned_cols=190 Identities=10% Similarity=-0.003 Sum_probs=106.9
Q ss_pred CcccHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCC--hhhHHHHHHHHh-ccCChHHHHHHHHHHHHhCCCCCcc----
Q 005305 94 SAGICSQIEKLVLNKRYREALELFEILEFEGGFDVG--SSTYDALISACI-GLRSIREVKRVFSYMLSTGFEPDLY---- 166 (703)
Q Consensus 94 ~~~~~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~--~~t~~~ll~~~~-~~~~~~~a~~l~~~~~~~g~~~~~~---- 166 (703)
++..|..+|+ .|++.++.+.+....+|. ..++..+...+. ...+++.|+..+++.+..--.++..
T Consensus 29 ~l~~Y~kLI~--------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~ 100 (608)
T PF10345_consen 29 QLKQYYKLIA--------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKF 100 (608)
T ss_pred hHHHHHHHHH--------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHH
Confidence 4455666665 356666666643324442 344555555555 5678999999999876543232221
Q ss_pred -hHHHHHHHHHhCCChHHHHHHHccCCC----CCcccHHHHH-----HHHHhCCChhHHHHHHHHhHHcC---CCCChhh
Q 005305 167 -MRNRVLLMHVRCGMMIDARRLFDEMPE----RNLVSCNMII-----AGMIDSGDYLEAFLLFLDLWEEF---SDCGSRT 233 (703)
Q Consensus 167 -~~~~Li~~y~~~g~~~~A~~~f~~m~~----~d~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t 233 (703)
....++..|.+.+... |.+..++..+ .....|.-.. ..+...+++..|++.++.....- ..|-...
T Consensus 101 ~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 101 RCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred HHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 2345567777776666 8877776543 1122333322 22233479999999998886532 3344455
Q ss_pred HHHHHHHHhc--CCChHHHHHHHHHHHHhCC---------CCcHHHHHHHHHHH--HhCCCHHHHHHHHhhc
Q 005305 234 FATMIRASAG--LELISVGKQLHSCALKMGF---------GDNVFVSCALIDMY--SKCGSIEDAQGVFDEM 292 (703)
Q Consensus 234 ~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~Li~~y--~~~g~~~~A~~~f~~m 292 (703)
+..++.+... .+..+.+.+....+..... .|-..++..+++.+ ...|++..+...++++
T Consensus 180 ~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 180 LASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666553 3445556555555533221 23455666666654 4567766665554443
No 403
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.30 E-value=4.3e+02 Score=30.80 Aligned_cols=131 Identities=13% Similarity=0.064 Sum_probs=86.6
Q ss_pred hhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHH
Q 005305 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454 (703)
Q Consensus 375 ~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 454 (703)
.....||+++.|.+.-..+. |...|..|...-..+|+.+-|+..|++.+. |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34567999999988866654 456899999999999999999999988764 2223334556788887766
Q ss_pred HHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhC
Q 005305 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529 (703)
Q Consensus 455 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 529 (703)
+-.-+.. ..|... ...--.-.|++++=.++++..+..|-. |. .-..+|.-++|+++.+++-.
T Consensus 720 m~~iae~----r~D~~~---~~qnalYl~dv~ervkIl~n~g~~~la--yl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 720 MMKIAEI----RNDATG---QFQNALYLGDVKERVKILENGGQLPLA--YL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHh----hhhhHH---HHHHHHHhccHHHHHHHHHhcCcccHH--HH----HHhhcCcHHHHHHHHHhhcc
Confidence 6554432 222211 111112368888888888877654322 21 22468888888888887764
No 404
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=35.90 E-value=71 Score=31.96 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=32.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVL 440 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 440 (703)
-||..|..-.+.|++++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 46788888889999999999999999988876666665544
No 405
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.31 E-value=4.9e+02 Score=26.34 Aligned_cols=112 Identities=18% Similarity=0.011 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHhHhhcCC---CCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 005305 448 LSERGWEIFQSMSRDHKI---KPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAA 524 (703)
Q Consensus 448 ~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~ 524 (703)
-.+++.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+.....+.+.-.+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 367788888888762111 33555566667777788887766666665555567777888999988888888888899
Q ss_pred HHHhCCC-CCCcchHHHHHHHHHhCCCh--HHHHHHHHH
Q 005305 525 EKLYGME-PEKLSNYVVLLNIYNSSGKL--KEAAEVIRT 560 (703)
Q Consensus 525 ~~~~~~~-p~~~~~~~~l~~~y~~~g~~--~~A~~~~~~ 560 (703)
..++.-+ -.....+..+..+ ...+.. +.+.+.++.
T Consensus 225 ~~~l~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 225 DLLLSNDKVRSQDIRYVLAGL-ASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHCTSTS-TTTHHHHHHHH-H-CSTTCHHHHHHHHHH
T ss_pred HHHcCCcccccHHHHHHHHHH-hcCChhhHHHHHHHHHH
Confidence 9888732 1112234444433 323333 556655543
No 406
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=35.22 E-value=4.6e+02 Score=27.59 Aligned_cols=53 Identities=13% Similarity=0.002 Sum_probs=39.8
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCchH--HHHHHHHHHH--hcCChHHHHHHHHhCC
Q 005305 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAM--HYACMIELLG--REGLLDEAFALIRGAP 496 (703)
Q Consensus 442 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~ 496 (703)
...+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 345789999999999999873 666555 5555666665 5678899999998754
No 407
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=35.03 E-value=2.3e+02 Score=22.55 Aligned_cols=39 Identities=10% Similarity=0.095 Sum_probs=29.0
Q ss_pred hCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHH
Q 005305 278 KCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL 317 (703)
Q Consensus 278 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~ 317 (703)
..|+.+.|.++++.++ +.+-.|..++.++...|+-+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577888888888888 77777888888877777655543
No 408
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=34.96 E-value=64 Score=32.25 Aligned_cols=38 Identities=24% Similarity=0.184 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHH
Q 005305 199 CNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFAT 236 (703)
Q Consensus 199 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 236 (703)
||.-|..-++.||+++|+.++++..+.|+.--..||..
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 56777777778888888888887777776644445443
No 409
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=33.86 E-value=1.2e+02 Score=33.23 Aligned_cols=100 Identities=15% Similarity=-0.006 Sum_probs=59.2
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCC-CCCHHHHHHHHHHHHHcCChhHHHHH
Q 005305 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APF-KTTKNMWAALLTACRVNGNLELGKFA 523 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~-~p~~~~~~~ll~a~~~~g~~~~a~~~ 523 (703)
.|+...|...+.........+.+ .....|...+.+.|...+|-.++.+ +.+ ...+.++-++..++....+++.|.+.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 45666666665554321111111 2233455666666777777766654 211 22344566677777777788888888
Q ss_pred HHHHhCCCCCCcchHHHHHHHHH
Q 005305 524 AEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 524 ~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
++++++++|+++..-..|..+-+
T Consensus 699 ~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHhcCCCChhhHHHHHHHHH
Confidence 88888888887776665555443
No 410
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=33.81 E-value=71 Score=23.64 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=16.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCCChh
Q 005305 107 NKRYREALELFEILEFEGGFDVGSS 131 (703)
Q Consensus 107 ~g~~~~A~~l~~~m~~~~~~~p~~~ 131 (703)
+-+++.|+..|.++...|.++|+.+
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 4467777777777777665666654
No 411
>PF15469 Sec5: Exocyst complex component Sec5
Probab=33.80 E-value=3.8e+02 Score=24.64 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=16.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 437 LAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 437 ~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
-.-|.-|.+.|+++.+...|..+..
T Consensus 90 P~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 90 PSNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3455667777777777777766655
No 412
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=33.70 E-value=8.4e+02 Score=28.59 Aligned_cols=216 Identities=13% Similarity=0.064 Sum_probs=110.4
Q ss_pred hCCCHHHHHHHHhhcC----CCCcc-------cHHHHHHH-HHHcCCcHHHHHHHHHHHHC----CCCCCHhhHHHHHHH
Q 005305 278 KCGSIEDAQGVFDEMS----EKTTV-------GWNTIIAG-YALHGYSEEALDLYYEMRDS----GVKMDHFTFSMIIRI 341 (703)
Q Consensus 278 ~~g~~~~A~~~f~~m~----~~~~~-------~~~~li~~-~~~~g~~~~A~~l~~~m~~~----g~~pd~~t~~~ll~a 341 (703)
...++++|..+..+.. .++.. .|+++-.. ....|++++|+++-+..... -..+....++.+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 4577888888777653 32221 46655443 33568888888887776553 122334455566666
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCchH---HHHHH--HhhHHhcCCH--HHHHHHhhhcC-----cC-----ChhhHHHH
Q 005305 342 CTRLASLEHAKQAHAGLVRHGFGLDIV---ANSAL--VDFYSKWGRI--EDARHVFDKML-----CK-----NVISWNAL 404 (703)
Q Consensus 342 ~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~L--i~~y~k~g~~--~~A~~~f~~m~-----~~-----~~~~~~~l 404 (703)
..-.|++++|..+.+...+..-.-++. ++..+ ...+...|+. ++.+..|.... .. -+.....+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 777888998888887776632122222 22222 2234445632 22233333331 11 12233444
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHcCCCcCHHHH--HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc-hHHHHHH---HH
Q 005305 405 IAGYGNH-GRGEEAVELFEQMLLNGMRPNHVTF--LAVLSACSRSGLSERGWEIFQSMSRDHKIKPR-AMHYACM---IE 477 (703)
Q Consensus 405 i~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l---i~ 477 (703)
..++.+. +...++..-+..-......|-...+ ..+.......|++++|....+++.. ....++ ..-|.++ +.
T Consensus 587 l~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~-l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 587 LRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELER-LLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HhcCCCCCchHHHHHHHhh
Confidence 4444441 1222222223222222222222222 2455667788999999998888876 233332 1122222 22
Q ss_pred H--HHhcCChHHHHHHHHh
Q 005305 478 L--LGREGLLDEAFALIRG 494 (703)
Q Consensus 478 ~--~~~~g~~~~A~~~~~~ 494 (703)
. -...|+.++|.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2356888887766655
No 413
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.49 E-value=8.7e+02 Score=28.73 Aligned_cols=128 Identities=17% Similarity=0.203 Sum_probs=63.7
Q ss_pred cHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHH
Q 005305 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378 (703)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 378 (703)
-|..|+.-|...|+.++|++++.+....--.-|... .+.-..+.+++.+.+-+ +.. |+-.|.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~-------------~~~~e~ii~YL~~l~~~-~~~----Li~~y~ 567 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQ-------------LDGLEKIIEYLKKLGAE-NLD----LILEYA 567 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccch-------------hhhHHHHHHHHHHhccc-chh----HHHHHh
Confidence 478899999999999999999998865310011110 01111133333333222 111 111121
Q ss_pred ---hcCCHHHHHHHhhhcCcCChhhHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005305 379 ---KWGRIEDARHVFDKMLCKNVISWNA-LIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444 (703)
Q Consensus 379 ---k~g~~~~A~~~f~~m~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 444 (703)
-..+.+...++|..-......+.+. -+-.|......+-++..++.+....-.++..-.+.++.-|.
T Consensus 568 ~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 568 DWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred hhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 1344555566665411001111111 12345556666677777777776554555555555555544
No 414
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.47 E-value=4.8e+02 Score=25.74 Aligned_cols=52 Identities=15% Similarity=0.240 Sum_probs=29.3
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHH
Q 005305 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315 (703)
Q Consensus 264 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 315 (703)
.|+.....+...|.+.|++.+|+.-|-.-..++...+..++.-+...|...+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e 139 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE 139 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc
Confidence 3677788888888899998888887765544444333334433333444433
No 415
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=33.32 E-value=49 Score=28.62 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=25.3
Q ss_pred HHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 005305 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRIC 342 (703)
Q Consensus 308 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 342 (703)
-..|.-.+|-.+|++|.+.|-+||. +..|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456677899999999999999985 55666544
No 416
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=33.26 E-value=29 Score=36.73 Aligned_cols=94 Identities=11% Similarity=0.072 Sum_probs=58.1
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHH-HHHHhcCChHHHHHHHHh-CCCCCCHH-HHHHHHHHHHHcCC
Q 005305 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMI-ELLGREGLLDEAFALIRG-APFKTTKN-MWAALLTACRVNGN 516 (703)
Q Consensus 440 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~-m~~~p~~~-~~~~ll~a~~~~g~ 516 (703)
++.....+.++.|..++..+++ +.|+-.+|-+.= .++.+.+++..|+.=+.+ +...|... .|--=..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4445566778888888877765 456554443332 566677777777655444 33344322 33333455666677
Q ss_pred hhHHHHHHHHHhCCCCCCcc
Q 005305 517 LELGKFAAEKLYGMEPEKLS 536 (703)
Q Consensus 517 ~~~a~~~~~~~~~~~p~~~~ 536 (703)
..+|...++....+.|+++.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHH
Confidence 77788888888888888653
No 417
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.19 E-value=2.9e+02 Score=23.72 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=33.2
Q ss_pred HHHHHHHHHh--CCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 519 LGKFAAEKLY--GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 519 ~a~~~~~~~~--~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
.+..+++.+. ++.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6677777765 55666677899999999999999999999875
No 418
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=32.61 E-value=1.6e+02 Score=20.30 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=22.0
Q ss_pred HHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 005305 308 ALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340 (703)
Q Consensus 308 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 340 (703)
.+.|...++..++++|.+.|+.-++..|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666677777777777777766666655553
No 419
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=32.17 E-value=1.7e+02 Score=23.16 Aligned_cols=60 Identities=15% Similarity=0.252 Sum_probs=35.2
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChh
Q 005305 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYL 213 (703)
Q Consensus 150 ~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~ 213 (703)
..++..+++.|+ .+....-...+...+.+.|.++++.++.++..+|....+++-..|...
T Consensus 19 ~~v~~~L~~~~V----lt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 19 KYLWDHLLSRGV----FTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHHHhcCC----CCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 345566665542 222222333334456677777777777777777777777766666543
No 420
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.09 E-value=6.3e+02 Score=26.66 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=38.5
Q ss_pred HHHHHHhhHHhcCCHHHHHHHhhhcCc------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 369 ANSALVDFYSKWGRIEDARHVFDKMLC------KNVISWNALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 369 ~~~~Li~~y~k~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
...-+.+-|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|++........+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 455677889999999999999988632 1233555555555556666666655555544
No 421
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=31.87 E-value=1.3e+02 Score=26.62 Aligned_cols=65 Identities=12% Similarity=0.043 Sum_probs=44.0
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChH
Q 005305 485 LDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLK 552 (703)
Q Consensus 485 ~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 552 (703)
-+.|.++.+-|+ ...............|++..|.++...++..+|+|...-...+++|.+.|.-.
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 355666666665 33333344555667899999999999999999999888888888887665433
No 422
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=31.81 E-value=2.9e+02 Score=23.58 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=29.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHH-------hCCCCCCcchHH----HHHHHHHhCCChHHHHHHHHHH
Q 005305 504 WAALLTACRVNGNLELGKFAAEKL-------YGMEPEKLSNYV----VLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 504 ~~~ll~a~~~~g~~~~a~~~~~~~-------~~~~p~~~~~~~----~l~~~y~~~g~~~~A~~~~~~m 561 (703)
+..|-.++...|+++++....++. =+++.+.-..|. .-.-++...|+.+||.+.|+..
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 333444444444444444333333 345555433333 4445677889999999888763
No 423
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.66 E-value=4.9e+02 Score=25.26 Aligned_cols=18 Identities=11% Similarity=0.351 Sum_probs=10.7
Q ss_pred HccCCHHHHHHHHHHhHh
Q 005305 444 SRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 444 ~~~g~~~~a~~~~~~m~~ 461 (703)
+..+++.+|..+|+.+.+
T Consensus 165 a~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445566666666666654
No 424
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=31.60 E-value=4.7e+02 Score=25.04 Aligned_cols=64 Identities=19% Similarity=0.132 Sum_probs=43.0
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcc-cHHHHHHH--HHHcCCcHHHHHHHHHHHHC
Q 005305 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV-GWNTIIAG--YALHGYSEEALDLYYEMRDS 326 (703)
Q Consensus 263 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~-~~~~li~~--~~~~g~~~~A~~l~~~m~~~ 326 (703)
|.-+.++|-|.--+...|+++.|.+.|+...+-|+. -|..+=++ +---|++.-|.+-|.+.-+.
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 334678888888888899999999999988776543 23222222 12257888888777666554
No 425
>PRK10941 hypothetical protein; Provisional
Probab=31.30 E-value=4.1e+02 Score=26.45 Aligned_cols=57 Identities=12% Similarity=0.020 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 403 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
.+-.+|.+.++++.|+...+.+.. +.|+. .-+.--.-.|.+.|.+..|..=++...+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344455555555555555555554 23432 2222233334444444444444444433
No 426
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=30.51 E-value=3.3e+02 Score=29.91 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=22.5
Q ss_pred cccHHHHHH-HHhcCChhHHHHHHHHHHH
Q 005305 95 AGICSQIEK-LVLNKRYREALELFEILEF 122 (703)
Q Consensus 95 ~~~~~~li~-~~~~g~~~~A~~l~~~m~~ 122 (703)
...-..++. |.+.++.++|+.++..|.=
T Consensus 408 ~l~~~eL~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 408 DLGLVELISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHHhCCc
Confidence 334556777 9999999999999998853
No 427
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=30.46 E-value=4.6e+02 Score=24.54 Aligned_cols=97 Identities=14% Similarity=0.106 Sum_probs=50.8
Q ss_pred HHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC--
Q 005305 185 RRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF-- 262 (703)
Q Consensus 185 ~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-- 262 (703)
+.+..+..++-.+.|.....+-++.-..+++-+.|- ...-.+++-.|-+..++.+|+++++.+.+..+
T Consensus 96 ~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~f 165 (233)
T PF14669_consen 96 EALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHF 165 (233)
T ss_pred HHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 334444444455566666666555544444333221 11223445555666667777777666655321
Q ss_pred ------------CCcHHHHHHHHHHHHhCCCHHHHHHHHhh
Q 005305 263 ------------GDNVFVSCALIDMYSKCGSIEDAQGVFDE 291 (703)
Q Consensus 263 ------------~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 291 (703)
.+.-.+.|.-...+.++|.+|-|..++++
T Consensus 166 t~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 166 TSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 22234555556666666666666666653
No 428
>PRK09169 hypothetical protein; Validated
Probab=30.07 E-value=1.4e+03 Score=30.20 Aligned_cols=434 Identities=11% Similarity=0.029 Sum_probs=237.9
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHh---C----CCCCcchHHHHHHHHHhCCChHHHHHHHccCC----C---
Q 005305 128 VGSSTYDALISACIGLRSIREVKRVFSYMLST---G----FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMP----E--- 193 (703)
Q Consensus 128 p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~---g----~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~--- 193 (703)
.+...+..+++++++-.+-..+...-..+-.. . ...|..-...++++++|.-+-...+..-+.+. .
T Consensus 160 l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~ 239 (2316)
T PRK09169 160 LDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMDAQEVANALNALSKWPDSPRCRNAAERLAERLADEPG 239 (2316)
T ss_pred hhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChH
Confidence 45677888888888877666555444443211 0 12234445566777777655444333322221 1
Q ss_pred ----CCcccHHHHHHHHHhCCChhHHHHHHH----HhHHc---CCCCChhhHHHHHHHHhcCCChHHHHHHHH----HHH
Q 005305 194 ----RNLVSCNMIIAGMIDSGDYLEAFLLFL----DLWEE---FSDCGSRTFATMIRASAGLELISVGKQLHS----CAL 258 (703)
Q Consensus 194 ----~d~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~----~~~ 258 (703)
-+......+++++++-.+-+.+...-. .+... ....|..-....++++++..+-+.+.+.-. .+.
T Consensus 240 l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~ 319 (2316)
T PRK09169 240 LLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLA 319 (2316)
T ss_pred HHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH
Confidence 134455668888888766554433222 22111 123466778889999999876654433322 221
Q ss_pred H---hCCCCcHHHHHHHHHHHHhCCCHHHHHH----HHhhcC-------CCCcccHHHHHHHHHHcCCcHH----HHHHH
Q 005305 259 K---MGFGDNVFVSCALIDMYSKCGSIEDAQG----VFDEMS-------EKTTVGWNTIIAGYALHGYSEE----ALDLY 320 (703)
Q Consensus 259 ~---~g~~~~~~~~~~Li~~y~~~g~~~~A~~----~f~~m~-------~~~~~~~~~li~~~~~~g~~~~----A~~l~ 320 (703)
. ..-..+..-....+++++|..+-+.+.. +-+++. .-|..-....+.++.+-++.+. |..+.
T Consensus 320 ~~~~l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA 399 (2316)
T PRK09169 320 QERGLLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALA 399 (2316)
T ss_pred hChhhhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 1 1123455556667888899887665332 222322 1244556667788888766542 23333
Q ss_pred HHHHHC-C--CCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH---c----CCCCchHHHHHHHhhHHhcCCHHHH----
Q 005305 321 YEMRDS-G--VKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR---H----GFGLDIVANSALVDFYSKWGRIEDA---- 386 (703)
Q Consensus 321 ~~m~~~-g--~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~---~----g~~~~~~~~~~Li~~y~k~g~~~~A---- 386 (703)
.++... + -..|..-.+..+.+|++.+.-+.+.+....+.. . .-..+..-....+.+++|.++-+.+
T Consensus 400 ~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa 479 (2316)
T PRK09169 400 ARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAA 479 (2316)
T ss_pred HHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHH
Confidence 333322 1 135677788999999988765544333222211 1 0123455666677888887765533
Q ss_pred HHHhhhcC-------cCChhhHHHHHHHHHhcCCHHHHH----HHHHHHHHc---CCCcCHHHHHHHHHHHHccCCHHHH
Q 005305 387 RHVFDKML-------CKNVISWNALIAGYGNHGRGEEAV----ELFEQMLLN---GMRPNHVTFLAVLSACSRSGLSERG 452 (703)
Q Consensus 387 ~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~----~l~~~m~~~---g~~p~~~t~~~ll~a~~~~g~~~~a 452 (703)
..+...+. .-+..-....+.++++-++.+.+. .+...+... --.-|..-+...+.++++-.+.+.+
T Consensus 480 ~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~c 559 (2316)
T PRK09169 480 EALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDC 559 (2316)
T ss_pred HHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHH
Confidence 23333331 124455667788888887765532 233333221 1123556678889999998764332
Q ss_pred ----HHHHHHhHhhc--CCCCchHHHHHHHHHHHhcCChHH----HHHHHHhCCC------CCCHHHHHHHHHHHHHcCC
Q 005305 453 ----WEIFQSMSRDH--KIKPRAMHYACMIELLGREGLLDE----AFALIRGAPF------KTTKNMWAALLTACRVNGN 516 (703)
Q Consensus 453 ----~~~~~~m~~~~--~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~------~p~~~~~~~ll~a~~~~g~ 516 (703)
..+...+.++- .-..+.......+.++++.+.-.. |..+..++.. .-|..-+..+++++.+-.+
T Consensus 560 r~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~ 639 (2316)
T PRK09169 560 RAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPD 639 (2316)
T ss_pred HHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCC
Confidence 23333332211 112345677788899998775432 3334443321 2367788899999998887
Q ss_pred hhHHHHHHHHHhC---CCC-----CCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 517 LELGKFAAEKLYG---MEP-----EKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 517 ~~~a~~~~~~~~~---~~p-----~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
.+....+...+-+ .+| -++.....+++++++-.+.+.+.+....+
T Consensus 640 ~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aL 692 (2316)
T PRK09169 640 EDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALAL 692 (2316)
T ss_pred chhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 7665443333221 111 13455677778888877766544444443
No 429
>PF13934 ELYS: Nuclear pore complex assembly
Probab=29.99 E-value=5.1e+02 Score=24.94 Aligned_cols=112 Identities=13% Similarity=0.166 Sum_probs=58.5
Q ss_pred cCCHHHHHHHhhhcCcCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 005305 380 WGRIEDARHVFDKMLCKNVIS--WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457 (703)
Q Consensus 380 ~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 457 (703)
.+++++|.+.+-.- .+.. ..-++.++..+|+.+.|+.+++.+.-....+ .....++.+ ...+.+.+|..+-+
T Consensus 91 ~~~~~~A~~~L~~p---s~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~R 164 (226)
T PF13934_consen 91 HGDFEEALELLSHP---SLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQR 164 (226)
T ss_pred hHhHHHHHHHhCCC---CCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHHH
Confidence 45666666665333 2211 1236777777888888888887754322222 222333333 44577888877655
Q ss_pred HhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH
Q 005305 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK 501 (703)
Q Consensus 458 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 501 (703)
..... -....+..++..+.....-....+.+-.+|+.+..
T Consensus 165 ~~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~E 204 (226)
T PF13934_consen 165 SYPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEE 204 (226)
T ss_pred hCchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHH
Confidence 54331 11345566666555333223334444456655443
No 430
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=28.83 E-value=69 Score=27.74 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=26.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHH
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISAC 140 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~ 140 (703)
.-..|.-.+|-.+|+.|...| -+|| .|+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G-~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERG-NPPD--DWDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCC-CCCc--cHHHHHHHh
Confidence 445567778999999999999 7776 477777665
No 431
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=28.83 E-value=4.3e+02 Score=25.39 Aligned_cols=92 Identities=21% Similarity=0.260 Sum_probs=46.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc---CHHHHH--HHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHH
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRP---NHVTFL--AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYAC 474 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 474 (703)
-.|.||--|.-+..+.+|-+.|.. +.|+.| |..++. .-+......|++++|.+....... .-+..|...+-.
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P-eiLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP-EILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh-HHHccchhHHHH
Confidence 344555555555555555555543 334444 222222 233444566777777666655533 123333222222
Q ss_pred HHH----HHHhcCChHHHHHHHHh
Q 005305 475 MIE----LLGREGLLDEAFALIRG 494 (703)
Q Consensus 475 li~----~~~~~g~~~~A~~~~~~ 494 (703)
|.. -+.|.|..++|+++.+.
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 211 14577888888888865
No 432
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=28.59 E-value=1.8e+02 Score=21.27 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=12.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhH
Q 005305 436 FLAVLSACSRSGLSERGWEIFQSMS 460 (703)
Q Consensus 436 ~~~ll~a~~~~g~~~~a~~~~~~m~ 460 (703)
-..++.++...|++++|.++.+.+.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555555555555555555443
No 433
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=27.82 E-value=7.7e+02 Score=26.31 Aligned_cols=46 Identities=7% Similarity=-0.184 Sum_probs=21.7
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHh
Q 005305 163 PDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMID 208 (703)
Q Consensus 163 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~ 208 (703)
++..+....+..+.+.+.......+..-...++...-.+.+.++..
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGA 143 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 3444555555666555555544444444444444333333344433
No 434
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.67 E-value=85 Score=23.04 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=19.5
Q ss_pred ccHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 005305 298 VGWNTIIAGYALHGYSEEALDLYYEMRD 325 (703)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 325 (703)
.-.-.+|.+|.+.|++++|.++..++..
T Consensus 24 ~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 24 LNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344577888888888888888777654
No 435
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=27.17 E-value=3.2e+02 Score=21.76 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=23.4
Q ss_pred hcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHH
Q 005305 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEA 417 (703)
Q Consensus 379 k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 417 (703)
..|+.+.|+++++.++ +....|...++++...|+.+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3466666666666666 6666666666666666655444
No 436
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=26.58 E-value=7.2e+02 Score=25.60 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=41.1
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHH-HHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHH
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE-EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSER 451 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~-~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 451 (703)
+.|..++.++-+.+..+-+.+..-......++..++-...-.+ -+..+++.+... ||..+...+++|.+.......
T Consensus 172 IAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 172 IADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhH
Confidence 3444444444444433333333222222333333333332222 233444444432 777777778887777666655
Q ss_pred HHHHHHHhHh
Q 005305 452 GWEIFQSMSR 461 (703)
Q Consensus 452 a~~~~~~m~~ 461 (703)
....+..+..
T Consensus 249 ~~~~i~~~L~ 258 (340)
T PF12069_consen 249 VAILIDALLQ 258 (340)
T ss_pred HHHHHHHHhc
Confidence 5554555544
No 437
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=26.23 E-value=1.2e+02 Score=29.03 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=36.6
Q ss_pred HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC
Q 005305 479 LGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534 (703)
Q Consensus 479 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 534 (703)
..+.|+.+.|.+++++. ...| ....|--+....-+.|+.+.|.+.+++.++++|+|
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34556666677776653 2223 44566666666677777777777777777777765
No 438
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=26.23 E-value=8.8e+02 Score=26.44 Aligned_cols=64 Identities=14% Similarity=-0.021 Sum_probs=48.8
Q ss_pred hhhhhhhccccccCCCCcccchhhcccccCccCCCCCcc-cHHHHHH--HHhcCChhHHHHHHHHHHHcC
Q 005305 58 ECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAG-ICSQIEK--LVLNKRYREALELFEILEFEG 124 (703)
Q Consensus 58 ~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~-~~~~li~--~~~~g~~~~A~~l~~~m~~~~ 124 (703)
|+-+|..-+...-|.+..... .++|..|....||.+ .|-.-.. |-.+.+.+.|..+|....+..
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v---~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEV---KKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHH---HHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 788888888877776668888 889988877655544 5655544 667777999999999888754
No 439
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=26.20 E-value=5.8e+02 Score=24.34 Aligned_cols=62 Identities=18% Similarity=0.084 Sum_probs=40.4
Q ss_pred HHHHHHHHHHcCChh-------HHHHHHHHHhCCC--CC----CcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 504 WAALLTACRVNGNLE-------LGKFAAEKLYGME--PE----KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 504 ~~~ll~a~~~~g~~~-------~a~~~~~~~~~~~--p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
+.-+...|+..|+.+ .|...++++++.+ |. .......++.++.+.|+.++|.+.+.++...+
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 334444555555533 4555566665433 22 23456688999999999999999999987543
No 440
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=26.15 E-value=5.5e+02 Score=24.05 Aligned_cols=58 Identities=12% Similarity=0.283 Sum_probs=42.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcC--------------CCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 437 LAVLSACSRSGLSERGWEIFQSMSRDHK--------------IKPRAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 437 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~--------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
.+++..|.+.-++.+|+++++.|-+ .. ..+.-...|.....+.+.|.+|.|..++++-
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~e-l~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHE-LQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 3566678888889999999888755 22 2233445667778888889999998888764
No 441
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=26.13 E-value=7.2e+02 Score=25.40 Aligned_cols=138 Identities=8% Similarity=0.012 Sum_probs=0.0
Q ss_pred CcccHHHHHHHHHhCCC------------hhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 005305 195 NLVSCNMIIAGMIDSGD------------YLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262 (703)
Q Consensus 195 d~~~~~~li~~~~~~g~------------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 262 (703)
|+.+|-.++..--..-. .+.-+.++++.++.+. -+.......+..+.+..+.+...+-++.++...
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~- 95 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN- 95 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-
Q ss_pred CCcHHHHHHHHHHHHh---CCCHHHHHHHHhhcCCC---------------------CcccHHHHHHHHHHcCCcHHHHH
Q 005305 263 GDNVFVSCALIDMYSK---CGSIEDAQGVFDEMSEK---------------------TTVGWNTIIAGYALHGYSEEALD 318 (703)
Q Consensus 263 ~~~~~~~~~Li~~y~~---~g~~~~A~~~f~~m~~~---------------------~~~~~~~li~~~~~~g~~~~A~~ 318 (703)
+.+..+|...++.... .-.++....+|.+.... =+..+.-+..-..+.|..+.|+.
T Consensus 96 ~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava 175 (321)
T PF08424_consen 96 PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVA 175 (321)
T ss_pred CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHH
Q ss_pred HHHHHHHCCC-CCCHhh
Q 005305 319 LYYEMRDSGV-KMDHFT 334 (703)
Q Consensus 319 l~~~m~~~g~-~pd~~t 334 (703)
+++.+.+.++ .|+...
T Consensus 176 ~~Qa~lE~n~~~P~~~~ 192 (321)
T PF08424_consen 176 LWQALLEFNFFRPESLS 192 (321)
T ss_pred HHHHHHHHHcCCccccc
No 442
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=25.97 E-value=8.4e+02 Score=26.11 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=38.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 005305 473 ACMIELLGREGLLDEAFALIRGAP--FKTTKNMWAALLTACRVNGNLELGKFAAEKLY 528 (703)
Q Consensus 473 ~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 528 (703)
..|+.-|.-.|.+.||.+.+++++ +-...+++.+++.+.-+.|+-+.-..+++..+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf 570 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECF 570 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456677888899999999998754 33356677788877777776554444444443
No 443
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=25.13 E-value=7.4e+02 Score=25.24 Aligned_cols=102 Identities=13% Similarity=0.128 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCC--hhhH--HHHHHHHHhcCCHHHHHHH
Q 005305 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN--VISW--NALIAGYGNHGRGEEAVEL 420 (703)
Q Consensus 345 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~--~~~~--~~li~~~~~~g~~~~A~~l 420 (703)
..-..+|+.+++.+++.+- ..|+ +..+.+.--...+.+.++| +.+| ..+...-.+.|+..+|.+.
T Consensus 229 a~Ti~~AE~l~k~ALka~e----~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAGE----TIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred hhhHHHHHHHHHHHHHHHH----HHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 3446677777777776531 1222 2222221112222333333 3333 2233334456888888888
Q ss_pred HHHHHHcCCCcCHH---HHHHHHHHHHccCCHHHHHHHHHHh
Q 005305 421 FEQMLLNGMRPNHV---TFLAVLSACSRSGLSERGWEIFQSM 459 (703)
Q Consensus 421 ~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m 459 (703)
|+++.+. .|=.. .-..++.+|.....+.+...++.+.
T Consensus 298 ~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 298 MRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8877654 33111 2234566666666555555555444
No 444
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=24.81 E-value=1.2e+03 Score=27.46 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=15.0
Q ss_pred HHHhhHHhcCCHHHHHHHhhhc
Q 005305 372 ALVDFYSKWGRIEDARHVFDKM 393 (703)
Q Consensus 372 ~Li~~y~k~g~~~~A~~~f~~m 393 (703)
.|+..+...|++++|...++++
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHH
Confidence 4566666677777777766665
No 445
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=24.61 E-value=3.1e+02 Score=23.65 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=30.6
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhC
Q 005305 492 IRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529 (703)
Q Consensus 492 ~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 529 (703)
+-.+.+-|++.+..+-|.||++.+|+..|.++++-+..
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33445678888889999999999999999998887763
No 446
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=24.48 E-value=8.8e+02 Score=25.87 Aligned_cols=92 Identities=9% Similarity=-0.058 Sum_probs=44.1
Q ss_pred CcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHH
Q 005305 394 LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473 (703)
Q Consensus 394 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 473 (703)
...|...-..-+.+....|. .+|......... .|+......+.......|. +++...+....++ +. +-.
T Consensus 188 ~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~---~~g~~~~~~l~~~lal~~~-~~a~~~L~~ll~d----~~--vr~ 256 (410)
T TIGR02270 188 RDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQV---LEGGPHRQRLLVLLAVAGG-PDAQAWLRELLQA----AA--TRR 256 (410)
T ss_pred cCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHh---ccCccHHHHHHHHHHhCCc-hhHHHHHHHHhcC----hh--hHH
Confidence 34444444455555566665 455554444332 2222222222222222232 2455555544442 22 334
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC
Q 005305 474 CMIELLGREGLLDEAFALIRGAP 496 (703)
Q Consensus 474 ~li~~~~~~g~~~~A~~~~~~m~ 496 (703)
..+.++++.|+.....-+++.|.
T Consensus 257 ~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 257 EALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred HHHHHHHHcCCcchHHHHHHHhc
Confidence 55666777777776666666665
No 447
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=24.42 E-value=4.1e+02 Score=21.96 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=12.6
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHH
Q 005305 302 TIIAGYALHGYSEEALDLYYEMR 324 (703)
Q Consensus 302 ~li~~~~~~g~~~~A~~l~~~m~ 324 (703)
.++..|...++.++|..-+.++.
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~ 29 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELK 29 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 34445555566666665555543
No 448
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=24.13 E-value=2.2e+02 Score=26.01 Aligned_cols=62 Identities=10% Similarity=0.147 Sum_probs=35.2
Q ss_pred HHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHH
Q 005305 424 MLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487 (703)
Q Consensus 424 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 487 (703)
+...|++++..-. .++......+..-.|.++++.+.+ .+...+..|..--++.+.+.|-+.+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~-~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLRE-AEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHh-hCCCCCcchHHHHHHHHHHCCCEEE
Confidence 3455666555332 333444444445567777777766 3445555555555677777776653
No 449
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.67 E-value=4e+02 Score=24.73 Aligned_cols=30 Identities=7% Similarity=0.050 Sum_probs=16.6
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 005305 476 IELLGREGLLDEAFALIRGAPFKTTKNMWA 505 (703)
Q Consensus 476 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~ 505 (703)
+-.|.+.|.+++|.+++++.-..|+.....
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r 147 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFSDPESQKLR 147 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhcCCCchhHH
Confidence 344556666666666666643345444333
No 450
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.66 E-value=9.8e+02 Score=26.10 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 005305 302 TIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339 (703)
Q Consensus 302 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 339 (703)
.++.+ .+.+++++|+.++.+|...|..|....-..+.
T Consensus 249 ~li~s-i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~ 285 (472)
T PRK14962 249 DYINA-IFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIE 285 (472)
T ss_pred HHHHH-HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34443 45789999999999999998877665443333
No 451
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=23.40 E-value=1.3e+02 Score=30.15 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=30.5
Q ss_pred hcCChHHHHHHHHh-CCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch
Q 005305 481 REGLLDEAFALIRG-APFKTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 481 ~~g~~~~A~~~~~~-m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 537 (703)
+.|+.++|..+|+- +...|+ +.+..-+..-.-.+++.-+|.+.+-+++.+.|.+..+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 45666666666653 333343 2233333333334556666667777777777766544
No 452
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=23.28 E-value=54 Score=17.91 Aligned_cols=11 Identities=45% Similarity=0.555 Sum_probs=8.2
Q ss_pred cchHHHHHHhh
Q 005305 665 DCHNAIKLIAM 675 (703)
Q Consensus 665 ~~~~~~~~~s~ 675 (703)
..|+++|+||.
T Consensus 11 glhe~ikli~n 21 (23)
T PF08225_consen 11 GLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHhc
Confidence 45888888874
No 453
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=23.05 E-value=1.4e+02 Score=29.84 Aligned_cols=49 Identities=16% Similarity=0.189 Sum_probs=39.1
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
.+.|+.++|..+|+.++.+.|+++....-++...-...++-+|-..+-+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ 175 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVK 175 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhe
Confidence 5789999999999999999999998777777666666666666666543
No 454
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=23.04 E-value=3.3e+02 Score=21.78 Aligned_cols=35 Identities=9% Similarity=0.188 Sum_probs=23.0
Q ss_pred hCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCC
Q 005305 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGD 211 (703)
Q Consensus 177 ~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~ 211 (703)
..-+.+.+.++++.++.++..+|..+..++-..+.
T Consensus 46 ~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 46 KPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred CCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 34456777777777777777777777776655443
No 455
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=22.79 E-value=4.9e+02 Score=22.30 Aligned_cols=43 Identities=12% Similarity=0.241 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhCCCC-cHHHHHHHHHHHHhCCCHHHHHHHHhh
Q 005305 249 VGKQLHSCALKMGFGD-NVFVSCALIDMYSKCGSIEDAQGVFDE 291 (703)
Q Consensus 249 ~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~~A~~~f~~ 291 (703)
.+..+|..|...|+.. -...|......+.+.|++++|.++|..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6666677776666533 355677777777888888888887753
No 456
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=22.78 E-value=4e+02 Score=21.27 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=11.5
Q ss_pred HHHHccCCHHHHHHHHHHhHh
Q 005305 441 SACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 441 ~a~~~~g~~~~a~~~~~~m~~ 461 (703)
......|..++|...+++.++
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334455666666666655544
No 457
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=22.70 E-value=1.5e+02 Score=28.43 Aligned_cols=55 Identities=15% Similarity=0.154 Sum_probs=49.5
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
...++.+.+.+++.+++++.|+....|.-+...--++|+.+.|.+.+++..+.+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 4678889999999999999999999999999999999999999999998876543
No 458
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.68 E-value=3.4e+02 Score=24.00 Aligned_cols=63 Identities=19% Similarity=0.197 Sum_probs=30.2
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChH
Q 005305 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLD 486 (703)
Q Consensus 422 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 486 (703)
+.+.+.|++++..= ..++....+.+..-.|.++++.+.+ .+..-+..|...-++.+...|-+.
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~-~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELRE-EGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHH-hCCCCCHhHHHHHHHHHHHCCCEE
Confidence 34444555544421 1334444444444566666666655 233333333334456666666543
No 459
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=22.35 E-value=3.2e+02 Score=20.11 Aligned_cols=52 Identities=19% Similarity=0.114 Sum_probs=30.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHh-----ccCChHHHHHH
Q 005305 100 QIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACI-----GLRSIREVKRV 152 (703)
Q Consensus 100 ~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~-----~~~~~~~a~~l 152 (703)
..+.+...|++-+|-++++.+-... ..|....+..+|..+. +.|+.+.|..+
T Consensus 5 ~~~~l~n~g~f~EaHEvlE~~W~~~-~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 5 EGIELFNAGDFFEAHEVLEELWKAA-PGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHCCCT--CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHcCCCHHHhHHHHHHHHHHC-CcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 3444667888888888888886543 2344555666665543 34555555443
No 460
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=22.19 E-value=1.3e+02 Score=19.29 Aligned_cols=14 Identities=7% Similarity=-0.005 Sum_probs=5.7
Q ss_pred HHHHcCChhHHHHH
Q 005305 510 ACRVNGNLELGKFA 523 (703)
Q Consensus 510 a~~~~g~~~~a~~~ 523 (703)
.+...|+.++|+..
T Consensus 10 ~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 10 NFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHTT-HHHHHHH
T ss_pred HHHHHhhHHHHHHH
Confidence 33444444444444
No 461
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=22.15 E-value=2.3e+02 Score=22.33 Aligned_cols=40 Identities=8% Similarity=0.194 Sum_probs=28.5
Q ss_pred HhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHH
Q 005305 277 SKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEA 316 (703)
Q Consensus 277 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 316 (703)
+...+.++|.++++.++.++..+|.++..++...|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3445677788888888888777888887777776655444
No 462
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=22.05 E-value=1e+02 Score=23.96 Aligned_cols=27 Identities=15% Similarity=0.346 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHcCcccCCCcc
Q 005305 594 TKEIYRKVDRMMLEISKHGYVPEEKTL 620 (703)
Q Consensus 594 ~~~~~~~~~~l~~~m~~~g~~p~~~~~ 620 (703)
..++.+.+++...+++..|+.||...+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 456777888999999999999998665
No 463
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.99 E-value=1.1e+03 Score=25.86 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=14.9
Q ss_pred hCCChhHHHHHHHHhHHcCCCCChh
Q 005305 208 DSGDYLEAFLLFLDLWEEFSDCGSR 232 (703)
Q Consensus 208 ~~g~~~~A~~~~~~m~~~g~~p~~~ 232 (703)
..+++++|+.++.+|...|..|...
T Consensus 255 ~~~d~~~Al~~l~~ll~~Gedp~~i 279 (472)
T PRK14962 255 FNGDVKRVFTVLDDVYYSGKDYEVL 279 (472)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHHH
Confidence 4466666666666666666555443
No 464
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=21.99 E-value=2.5e+02 Score=30.85 Aligned_cols=111 Identities=12% Similarity=0.065 Sum_probs=54.1
Q ss_pred HHHHHHHhhcCCCCcccHHHHHH---HHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 005305 283 EDAQGVFDEMSEKTTVGWNTIIA---GYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359 (703)
Q Consensus 283 ~~A~~~f~~m~~~~~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 359 (703)
+-+..+|..|..++...|-+|=. -+.-.|+...|...+.........-..+....+.+...+.+....|..++.+.+
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 33445555555554444433211 122356666666666554433211122334444444445555555555555554
Q ss_pred HcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC
Q 005305 360 RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML 394 (703)
Q Consensus 360 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 394 (703)
... ...+.++-.+.++|....+++.|.+.|+...
T Consensus 670 ~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~ 703 (886)
T KOG4507|consen 670 AIN-SSEPLTFLSLGNAYLALKNISGALEAFRQAL 703 (886)
T ss_pred hhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHH
Confidence 433 2344455556666666666666666666553
No 465
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=21.67 E-value=1.8e+02 Score=29.30 Aligned_cols=78 Identities=8% Similarity=0.036 Sum_probs=48.1
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHH
Q 005305 465 IKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAA-LLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541 (703)
Q Consensus 465 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~-ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 541 (703)
+..|+..|.-.+.-..+.|.+.+.-.++.+. ...| |+..|-. ----+..+++++.++..+.+.+.++|++|..|...
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 3445555544444334555566666666553 3334 4445643 22234578899999999999999999988877644
Q ss_pred H
Q 005305 542 L 542 (703)
Q Consensus 542 ~ 542 (703)
.
T Consensus 183 f 183 (435)
T COG5191 183 F 183 (435)
T ss_pred H
Confidence 3
No 466
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=21.53 E-value=3.7e+02 Score=23.79 Aligned_cols=14 Identities=14% Similarity=0.043 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHhC
Q 005305 248 SVGKQLHSCALKMG 261 (703)
Q Consensus 248 ~~a~~~~~~~~~~g 261 (703)
-.|..+|+.+.+.+
T Consensus 37 ~sAeei~~~l~~~~ 50 (145)
T COG0735 37 LSAEELYEELREEG 50 (145)
T ss_pred CCHHHHHHHHHHhC
Confidence 34444444444443
No 467
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.45 E-value=1.9e+02 Score=23.95 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=10.3
Q ss_pred HHHHHHHcCCcHHHHHHHHHH
Q 005305 303 IIAGYALHGYSEEALDLYYEM 323 (703)
Q Consensus 303 li~~~~~~g~~~~A~~l~~~m 323 (703)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344455555555555555443
No 468
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=21.28 E-value=4.3e+02 Score=21.08 Aligned_cols=62 Identities=21% Similarity=0.105 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC--cchHHHHHHHHHhCCChH-HHHHHHHHH
Q 005305 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK--LSNYVVLLNIYNSSGKLK-EAAEVIRTL 561 (703)
Q Consensus 500 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~-~A~~~~~~m 561 (703)
|....-.+...+...|+++.|...+-.++..+|+. ...-..|+.++.-.|.-+ -+.+.+++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 44455566667777777777777777777666542 455567777777766643 455555544
No 469
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=21.28 E-value=3.7e+02 Score=22.36 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=42.3
Q ss_pred HHhhhhHHHHHHhcccCCCCCCcEEEEecccccCcchHHHHHHhhhcCceEEEecCC
Q 005305 631 VLSYHSEKLAVAFGLINTSDWTPLQIVQSHRICCDCHNAIKLIAMVTGREIVVRDAS 687 (703)
Q Consensus 631 ~~~~~~e~la~~~~l~~~~~~~~~~~~k~l~~~~~~~~~~~~~s~~~~~~i~~~d~~ 687 (703)
.|..|.|.-++.-=-.+..+|..+.|.--++-|..|.-++.-.+.-.+-.|+-++.+
T Consensus 46 slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 46 SLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 356777766654322233347777777789999999999999999999988887743
No 470
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=21.24 E-value=9.2e+02 Score=24.88 Aligned_cols=96 Identities=8% Similarity=0.034 Sum_probs=54.8
Q ss_pred HHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHH-HHHHHHHHCCCCCCHhhHHHHHHHHhccCCHH
Q 005305 271 ALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEAL-DLYYEMRDSGVKMDHFTFSMIIRICTRLASLE 349 (703)
Q Consensus 271 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 349 (703)
.+.+.+++.++.+.+..+-..+..-......++..++-...-.+... .+++..... ||..+...++++.+......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 35566666666665555555554433344455555444433333333 334444333 88888888999888877777
Q ss_pred HHHHHHHHHHHcCCCCchHH
Q 005305 350 HAKQAHAGLVRHGFGLDIVA 369 (703)
Q Consensus 350 ~a~~~~~~~~~~g~~~~~~~ 369 (703)
.....+..++......+..+
T Consensus 248 ~~~~~i~~~L~~~~~~~~e~ 267 (340)
T PF12069_consen 248 LVAILIDALLQSPRLCHPEV 267 (340)
T ss_pred HHHHHHHHHhcCcccCChHH
Confidence 66666666666543333333
No 471
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=21.17 E-value=2.9e+02 Score=27.33 Aligned_cols=59 Identities=24% Similarity=0.129 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 505 AALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 505 ~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
..+=.++.+.++++.|....++.+.++|+++....--+-+|.+.|...-|.+-+....+
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 34445677888889999999999999999887777888889999998888887776543
No 472
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=20.86 E-value=4.6e+02 Score=28.50 Aligned_cols=88 Identities=15% Similarity=0.180 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC--------cchHHH
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK--------LSNYVV 540 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--------~~~~~~ 540 (703)
...|-..+.-|...+++++|.++.+-.. +...|.+|......+.+..-++.++..+.+.+.-. +.--.-
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~ 649 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQ 649 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHH
Confidence 3345566677788888999888876554 56778888777777777777777666555443210 111123
Q ss_pred HHHHHHhCCChHHHHHHHH
Q 005305 541 LLNIYNSSGKLKEAAEVIR 559 (703)
Q Consensus 541 l~~~y~~~g~~~~A~~~~~ 559 (703)
++....-.|+..||.-++.
T Consensus 650 mA~~~l~~G~~~eAe~iLl 668 (737)
T KOG1524|consen 650 MAENSLMLGRMLEAETILL 668 (737)
T ss_pred HHHHHHHhccchhhhHHHH
Confidence 4444455677777776654
No 473
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.80 E-value=1.5e+02 Score=34.26 Aligned_cols=49 Identities=18% Similarity=0.270 Sum_probs=39.9
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhC
Q 005305 478 LLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYG 529 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 529 (703)
+...+|+++.|++.-.++. |..+|..|.......|+.+.|+..+++...
T Consensus 652 LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 3457899999998887765 778899999999999999999888877643
No 474
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=20.69 E-value=43 Score=23.53 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=18.5
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCChh
Q 005305 106 LNKRYREALELFEILEFEGGFDVGSS 131 (703)
Q Consensus 106 ~~g~~~~A~~l~~~m~~~~~~~p~~~ 131 (703)
.+-+++.|+..|..+...|.+||+.+
T Consensus 25 n~Wd~~~A~~~F~~l~~~~~IP~eAF 50 (51)
T PF03943_consen 25 NNWDYERALQNFEELKAQGKIPPEAF 50 (51)
T ss_dssp TTT-CCHHHHHHHHCCCTT-S-CCCC
T ss_pred cCCCHHHHHHHHHHHHHcCCCChHhc
Confidence 34578899999999988877888764
No 475
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=20.66 E-value=4.8e+02 Score=29.33 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=41.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHH------HHHHHHhhcC-CCCcccHHHHHHH
Q 005305 236 TMIRASAGLELISVGKQLHSCALKMG--FGDNVFVSCALIDMYSKCGSIE------DAQGVFDEMS-EKTTVGWNTIIAG 306 (703)
Q Consensus 236 ~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~------~A~~~f~~m~-~~~~~~~~~li~~ 306 (703)
+++.+|...|++-.+++++...+... -..-...+|..++-..+.|.++ .|.+.+++.. .-|..+|..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 78888888888888888887776643 1222345566666666666543 2333333322 2344555555554
Q ss_pred H
Q 005305 307 Y 307 (703)
Q Consensus 307 ~ 307 (703)
-
T Consensus 113 s 113 (1117)
T COG5108 113 S 113 (1117)
T ss_pred h
Confidence 3
No 476
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=20.47 E-value=3.3e+02 Score=24.77 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=9.9
Q ss_pred CChhHHHHHHHHhHHcCCCCChhh
Q 005305 210 GDYLEAFLLFLDLWEEFSDCGSRT 233 (703)
Q Consensus 210 g~~~~A~~~~~~m~~~g~~p~~~t 233 (703)
++.-.|.++++.+.+.+..++..|
T Consensus 39 ~~hlSa~eI~~~L~~~~~~is~aT 62 (169)
T PRK11639 39 PGAISAYDLLDLLREAEPQAKPPT 62 (169)
T ss_pred CCCCCHHHHHHHHHhhCCCCCcch
Confidence 333344444444444443333333
No 477
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=20.24 E-value=1.9e+02 Score=22.03 Aligned_cols=32 Identities=6% Similarity=0.024 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhC
Q 005305 146 IREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC 178 (703)
Q Consensus 146 ~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~ 178 (703)
.+.|++++..+.... ..++..||++...+.+.
T Consensus 13 tEmA~~mL~DLr~de-kRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 13 TEMAQQMLADLRDDE-KRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHhcchh-hcChHHHHHHHHHHHHc
Confidence 455566666554322 44566677766665543
Done!