Query 005305
Match_columns 703
No_of_seqs 872 out of 4849
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 21:33:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005305.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005305hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.5E-42 3.3E-46 384.4 41.7 485 64-565 58-580 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.7E-38 9.2E-43 356.2 26.4 480 57-547 82-596 (597)
3 4g26_A Pentatricopeptide repea 99.9 5.1E-27 1.8E-31 254.6 21.9 184 298-482 27-223 (501)
4 4g26_A Pentatricopeptide repea 99.9 7.5E-27 2.6E-31 253.3 20.9 211 214-446 8-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 2.6E-24 8.8E-29 228.3 40.1 372 138-550 7-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 1.4E-23 4.9E-28 222.5 41.9 353 202-564 5-368 (388)
7 2gw1_A Mitochondrial precursor 99.9 1.4E-21 4.8E-26 215.0 31.4 434 96-538 7-486 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 1.4E-20 4.8E-25 203.4 36.0 335 195-560 25-405 (450)
9 2gw1_A Mitochondrial precursor 99.9 4.5E-21 1.5E-25 210.9 32.1 393 166-565 7-479 (514)
10 3fp2_A TPR repeat-containing p 99.9 2E-20 6.9E-25 207.1 33.9 419 96-565 26-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 2.4E-19 8.2E-24 193.7 33.8 365 94-489 25-445 (450)
12 3fp2_A TPR repeat-containing p 99.8 3E-18 1E-22 189.6 28.0 435 60-538 26-499 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1.9E-16 6.3E-21 164.9 35.0 305 231-564 3-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 2.5E-16 8.5E-21 163.9 34.7 325 195-547 2-352 (359)
15 1b89_A Protein (clathrin heavy 99.8 1.4E-17 4.6E-22 172.4 21.2 353 177-565 15-386 (449)
16 3hym_B Cell division cycle pro 99.8 3.6E-16 1.2E-20 160.8 29.7 287 263-552 19-322 (330)
17 2ooe_A Cleavage stimulation fa 99.7 8.4E-15 2.9E-19 161.8 40.0 421 117-564 2-492 (530)
18 2xm6_A Protein corresponding t 99.7 8.3E-15 2.8E-19 160.1 38.6 364 165-547 39-452 (490)
19 1b89_A Protein (clathrin heavy 99.7 1.2E-16 4.1E-21 165.4 21.7 221 71-326 15-236 (449)
20 2ooe_A Cleavage stimulation fa 99.7 5.9E-15 2E-19 163.0 37.0 406 94-533 12-495 (530)
21 3hym_B Cell division cycle pro 99.7 1.3E-15 4.4E-20 156.6 28.3 264 295-563 20-298 (330)
22 1fch_A Peroxisomal targeting s 99.7 6.5E-16 2.2E-20 161.8 24.4 280 277-560 36-355 (368)
23 2xm6_A Protein corresponding t 99.7 1.4E-13 4.6E-18 150.4 42.0 352 194-566 37-434 (490)
24 1fch_A Peroxisomal targeting s 99.7 1E-15 3.5E-20 160.2 24.1 279 178-493 38-354 (368)
25 1xi4_A Clathrin heavy chain; a 99.7 1.5E-13 5E-18 157.8 42.5 258 232-521 1106-1375(1630)
26 1xi4_A Clathrin heavy chain; a 99.7 3.1E-13 1.1E-17 155.1 42.7 380 132-557 987-1377(1630)
27 4eqf_A PEX5-related protein; a 99.7 1.6E-15 5.5E-20 158.9 22.4 261 296-560 64-352 (365)
28 4g1t_A Interferon-induced prot 99.7 2.8E-14 9.4E-19 155.0 29.7 368 165-575 51-470 (472)
29 3mkr_A Coatomer subunit epsilo 99.7 4E-14 1.4E-18 142.9 28.7 268 276-557 9-287 (291)
30 3spa_A Mtrpol, DNA-directed RN 99.7 1.1E-16 3.7E-21 178.1 9.4 132 363-495 123-262 (1134)
31 3cv0_A Peroxisome targeting si 99.7 1.3E-14 4.6E-19 148.8 24.0 259 298-561 22-312 (327)
32 4eqf_A PEX5-related protein; a 99.6 9.2E-15 3.2E-19 153.0 22.3 271 94-392 64-352 (365)
33 3spa_A Mtrpol, DNA-directed RN 99.6 4.4E-16 1.5E-20 173.3 10.9 163 261-423 122-306 (1134)
34 3mkr_A Coatomer subunit epsilo 99.6 5.1E-14 1.7E-18 142.2 24.3 246 305-565 7-265 (291)
35 3cv0_A Peroxisome targeting si 99.6 8.2E-14 2.8E-18 142.8 24.0 274 195-495 20-312 (327)
36 4g1t_A Interferon-induced prot 99.6 7.8E-13 2.7E-17 143.5 32.1 381 128-541 49-470 (472)
37 3uq3_A Heat shock protein STI1 99.5 7E-13 2.4E-17 130.7 21.8 216 336-564 9-236 (258)
38 3uq3_A Heat shock protein STI1 99.5 8E-13 2.7E-17 130.3 19.7 233 299-542 7-254 (258)
39 1xnf_A Lipoprotein NLPI; TPR, 99.5 2E-12 6.9E-17 128.9 21.8 241 309-558 17-269 (275)
40 2pl2_A Hypothetical conserved 99.5 1.1E-12 3.7E-17 126.3 18.9 194 364-561 2-211 (217)
41 3e4b_A ALGK; tetratricopeptide 99.4 1E-11 3.5E-16 133.7 24.8 372 136-562 9-419 (452)
42 3u4t_A TPR repeat-containing p 99.4 5.8E-12 2E-16 125.5 21.0 253 268-549 5-269 (272)
43 2pl2_A Hypothetical conserved 99.4 4.5E-12 1.5E-16 121.9 17.5 193 94-292 4-211 (217)
44 2ho1_A Type 4 fimbrial biogene 99.4 2.5E-11 8.4E-16 119.4 23.0 197 367-565 37-239 (252)
45 2vq2_A PILW, putative fimbrial 99.4 3.4E-11 1.2E-15 115.7 22.5 197 366-564 7-211 (225)
46 4e6h_A MRNA 3'-END-processing 99.4 1.6E-09 5.6E-14 120.8 38.1 422 94-545 65-584 (679)
47 1ouv_A Conserved hypothetical 99.4 1.4E-10 4.9E-15 115.6 26.9 224 296-565 5-252 (273)
48 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.8E-11 9.4E-16 120.6 21.1 214 208-426 17-243 (275)
49 3e4b_A ALGK; tetratricopeptide 99.4 4.6E-11 1.6E-15 128.6 24.3 267 281-566 89-389 (452)
50 2h6f_A Protein farnesyltransfe 99.4 3.8E-11 1.3E-15 125.4 22.9 244 298-547 98-365 (382)
51 2ho1_A Type 4 fimbrial biogene 99.4 6.8E-11 2.3E-15 116.2 23.5 207 297-538 37-246 (252)
52 2q7f_A YRRB protein; TPR, prot 99.4 1.3E-11 4.4E-16 120.4 18.0 197 366-565 22-223 (243)
53 2vq2_A PILW, putative fimbrial 99.4 9.7E-11 3.3E-15 112.5 23.3 199 339-540 15-221 (225)
54 1ouv_A Conserved hypothetical 99.4 1.5E-10 5.2E-15 115.4 25.5 189 264-461 4-214 (273)
55 2q7f_A YRRB protein; TPR, prot 99.4 1.7E-11 5.8E-16 119.6 17.7 212 297-547 23-239 (243)
56 4a1s_A PINS, partner of inscut 99.3 1.2E-11 4.2E-16 131.3 17.0 265 268-563 50-371 (411)
57 3u4t_A TPR repeat-containing p 99.3 1.7E-10 5.7E-15 114.7 23.4 227 231-461 3-249 (272)
58 2h6f_A Protein farnesyltransfe 99.3 5E-11 1.7E-15 124.5 20.1 225 333-563 98-347 (382)
59 3sf4_A G-protein-signaling mod 99.3 4.8E-11 1.6E-15 126.1 20.1 196 368-563 88-335 (406)
60 3ro2_A PINS homolog, G-protein 99.3 4E-11 1.4E-15 122.8 18.4 197 368-564 84-332 (338)
61 3vtx_A MAMA; tetratricopeptide 99.3 1.6E-10 5.6E-15 107.5 19.9 165 397-565 4-171 (184)
62 4abn_A Tetratricopeptide repea 99.3 2.6E-11 8.7E-16 131.4 14.9 207 349-560 85-317 (474)
63 4a1s_A PINS, partner of inscut 99.3 9E-11 3.1E-15 124.6 18.7 98 435-532 265-374 (411)
64 4e6h_A MRNA 3'-END-processing 99.3 1.2E-08 4.1E-13 113.8 36.2 436 108-566 46-572 (679)
65 3sf4_A G-protein-signaling mod 99.3 2.3E-10 7.9E-15 120.8 21.0 118 435-552 229-364 (406)
66 3ro2_A PINS homolog, G-protein 99.3 1.5E-10 5E-15 118.5 18.6 62 471-532 265-334 (338)
67 3nf1_A KLC 1, kinesin light ch 99.3 2.3E-11 7.9E-16 123.4 12.3 236 297-563 27-306 (311)
68 2ond_A Cleavage stimulation fa 99.2 1.3E-09 4.6E-14 110.8 23.9 218 314-535 33-275 (308)
69 3vtx_A MAMA; tetratricopeptide 99.2 8.5E-10 2.9E-14 102.6 18.0 167 366-535 4-175 (184)
70 4gyw_A UDP-N-acetylglucosamine 99.2 2.3E-10 7.8E-15 129.2 16.5 163 397-563 8-173 (723)
71 2ond_A Cleavage stimulation fa 99.2 2.3E-09 7.8E-14 109.0 22.6 228 95-326 8-270 (308)
72 3ulq_A Response regulator aspa 99.2 9.5E-10 3.3E-14 115.6 20.0 194 369-563 145-367 (383)
73 3nf1_A KLC 1, kinesin light ch 99.2 8.7E-11 3E-15 119.1 11.3 242 263-533 24-310 (311)
74 3ulq_A Response regulator aspa 99.1 1.8E-09 6.1E-14 113.5 20.4 227 304-530 110-368 (383)
75 3as5_A MAMA; tetratricopeptide 99.1 1.5E-09 5.3E-14 100.3 16.6 160 368-564 9-173 (186)
76 1hz4_A MALT regulatory protein 99.1 3.3E-08 1.1E-12 103.2 28.1 224 340-563 61-321 (373)
77 4i17_A Hypothetical protein; T 99.1 5.5E-09 1.9E-13 100.8 19.3 204 330-545 5-224 (228)
78 4abn_A Tetratricopeptide repea 99.0 1.5E-09 5.3E-14 117.4 14.7 207 147-358 85-318 (474)
79 4i17_A Hypothetical protein; T 99.0 8.6E-09 2.9E-13 99.5 18.5 188 366-564 6-209 (228)
80 3q15_A PSP28, response regulat 99.0 1.1E-08 3.8E-13 107.2 20.6 219 343-562 112-363 (378)
81 3as5_A MAMA; tetratricopeptide 99.0 7.9E-09 2.7E-13 95.4 17.0 158 333-494 9-169 (186)
82 1hz4_A MALT regulatory protein 99.0 9.4E-08 3.2E-12 99.8 27.2 257 205-461 23-321 (373)
83 3q15_A PSP28, response regulat 99.0 1.2E-07 4E-12 99.3 27.1 225 305-529 109-364 (378)
84 3edt_B KLC 2, kinesin light ch 99.0 4.1E-09 1.4E-13 104.8 14.5 164 400-563 87-280 (283)
85 1qqe_A Vesicular transport pro 98.9 5E-08 1.7E-12 98.1 18.0 214 281-533 32-272 (292)
86 4gyw_A UDP-N-acetylglucosamine 98.9 1.1E-08 3.8E-13 115.4 14.1 162 366-531 8-175 (723)
87 3edt_B KLC 2, kinesin light ch 98.8 1.4E-07 4.8E-12 93.5 19.8 197 334-530 45-281 (283)
88 1qqe_A Vesicular transport pro 98.8 3.6E-08 1.2E-12 99.2 15.0 227 315-561 3-266 (292)
89 3qky_A Outer membrane assembly 98.8 1.6E-07 5.5E-12 92.6 18.1 205 366-610 14-247 (261)
90 3mv2_B Coatomer subunit epsilo 98.8 4.3E-07 1.5E-11 90.1 20.5 161 399-564 101-282 (310)
91 2fo7_A Synthetic consensus TPR 98.8 1.2E-07 4E-12 82.1 13.8 130 400-564 3-132 (136)
92 3qky_A Outer membrane assembly 98.7 2E-07 6.7E-12 91.9 16.5 203 330-553 13-250 (261)
93 4ga2_A E3 SUMO-protein ligase 98.7 1.4E-08 4.9E-13 90.9 7.3 138 409-550 8-149 (150)
94 2uy1_A Cleavage stimulation fa 98.7 2.9E-06 1E-10 91.6 26.2 99 107-224 7-117 (493)
95 2yhc_A BAMD, UPF0169 lipoprote 98.7 6E-07 2E-11 86.3 18.6 181 367-567 4-216 (225)
96 3mv2_B Coatomer subunit epsilo 98.7 9.7E-07 3.3E-11 87.6 19.7 238 278-537 25-289 (310)
97 2fo7_A Synthetic consensus TPR 98.7 3.3E-07 1.1E-11 79.2 14.7 124 369-495 3-129 (136)
98 2pzi_A Probable serine/threoni 98.7 6.9E-08 2.4E-12 109.3 12.3 168 378-550 402-583 (681)
99 3qou_A Protein YBBN; thioredox 98.7 4.7E-07 1.6E-11 90.7 16.7 175 383-562 102-282 (287)
100 3rjv_A Putative SEL1 repeat pr 98.6 1.6E-06 5.6E-11 82.3 18.6 162 396-566 16-199 (212)
101 2pzi_A Probable serine/threoni 98.6 1.1E-06 3.9E-11 99.3 18.8 190 343-538 402-610 (681)
102 3urz_A Uncharacterized protein 98.6 1.7E-06 5.7E-11 82.0 16.9 126 404-534 60-190 (208)
103 2vsy_A XCC0866; transferase, g 98.6 5.7E-07 2E-11 99.7 15.2 159 380-542 2-169 (568)
104 4ga2_A E3 SUMO-protein ligase 98.5 1.1E-07 3.7E-12 85.0 7.3 120 441-563 5-128 (150)
105 2r5s_A Uncharacterized protein 98.5 7.7E-07 2.6E-11 81.8 13.1 75 488-562 93-171 (176)
106 2ifu_A Gamma-SNAP; membrane fu 98.5 2.4E-06 8.2E-11 86.4 17.7 220 310-557 4-254 (307)
107 2r5s_A Uncharacterized protein 98.5 1.6E-06 5.3E-11 79.7 14.3 156 167-325 8-172 (176)
108 3dra_A Protein farnesyltransfe 98.5 1.7E-05 5.9E-10 79.3 22.9 214 312-563 48-286 (306)
109 2vgx_A Chaperone SYCD; alterna 98.5 5.1E-07 1.7E-11 80.4 9.5 97 468-564 20-118 (148)
110 2ifu_A Gamma-SNAP; membrane fu 98.5 2.4E-06 8.2E-11 86.4 15.6 90 369-459 118-221 (307)
111 2vsy_A XCC0866; transferase, g 98.5 1.7E-06 6E-11 95.8 15.8 146 345-495 2-154 (568)
112 3gyz_A Chaperone protein IPGC; 98.5 8.9E-07 3E-11 78.9 10.8 101 465-565 31-134 (151)
113 3dra_A Protein farnesyltransfe 98.5 6.9E-05 2.4E-09 74.9 25.8 222 270-494 37-283 (306)
114 2yhc_A BAMD, UPF0169 lipoprote 98.4 2.6E-06 8.8E-11 81.8 14.7 185 332-537 4-220 (225)
115 3qou_A Protein YBBN; thioredox 98.4 5.6E-06 1.9E-10 82.8 17.5 160 127-323 114-281 (287)
116 2uy1_A Cleavage stimulation fa 98.4 4.6E-05 1.6E-09 82.2 25.6 342 65-425 21-411 (493)
117 3urz_A Uncharacterized protein 98.4 6E-06 2E-10 78.1 16.6 135 370-509 57-198 (208)
118 4gco_A Protein STI-1; structur 98.4 1.3E-06 4.5E-11 75.3 10.6 109 434-544 14-124 (126)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.4 4.7E-06 1.6E-10 78.9 15.5 123 438-565 11-151 (213)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.4 8.8E-06 3E-10 76.9 17.4 145 370-534 9-154 (213)
121 3u3w_A Transcriptional activat 98.4 2.1E-05 7.3E-10 78.7 20.7 159 404-562 81-264 (293)
122 2qfc_A PLCR protein; TPR, HTH, 98.4 1.1E-05 3.9E-10 80.7 18.4 164 399-562 76-264 (293)
123 3rjv_A Putative SEL1 repeat pr 98.4 8.8E-06 3E-10 77.2 16.3 125 265-393 17-155 (212)
124 2c2l_A CHIP, carboxy terminus 98.4 6.7E-07 2.3E-11 89.3 8.6 190 367-564 4-199 (281)
125 2xcb_A PCRH, regulatory protei 98.3 4.8E-06 1.6E-10 73.3 12.6 96 469-564 18-115 (142)
126 1na0_A Designed protein CTPR3; 98.3 5.8E-06 2E-10 70.1 12.2 113 435-549 11-125 (125)
127 4gco_A Protein STI-1; structur 98.3 3.8E-06 1.3E-10 72.3 10.9 100 465-564 8-110 (126)
128 1a17_A Serine/threonine protei 98.3 6.7E-06 2.3E-10 74.0 13.2 125 436-562 16-144 (166)
129 3u3w_A Transcriptional activat 98.3 4.5E-05 1.5E-09 76.3 20.4 122 340-461 123-265 (293)
130 2vyi_A SGTA protein; chaperone 98.3 6.7E-06 2.3E-10 70.4 11.7 116 434-551 13-130 (131)
131 2lni_A Stress-induced-phosphop 98.2 8.2E-06 2.8E-10 70.2 11.8 115 434-550 17-133 (133)
132 4f3v_A ESX-1 secretion system 98.2 3.4E-06 1.2E-10 82.5 9.3 135 402-541 106-247 (282)
133 1p5q_A FKBP52, FK506-binding p 98.2 6.3E-06 2.2E-10 84.5 11.5 94 469-562 196-292 (336)
134 2e2e_A Formate-dependent nitri 98.2 4.6E-06 1.6E-10 76.4 9.4 118 446-565 23-145 (177)
135 3upv_A Heat shock protein STI1 98.2 8.5E-06 2.9E-10 69.8 10.3 96 469-564 4-101 (126)
136 4f3v_A ESX-1 secretion system 98.1 4E-05 1.4E-09 75.0 15.3 182 379-565 18-238 (282)
137 3gw4_A Uncharacterized protein 98.1 0.0001 3.4E-09 68.7 17.8 94 400-493 68-171 (203)
138 2kck_A TPR repeat; tetratricop 98.1 1.2E-05 4E-10 66.7 10.0 99 468-566 5-108 (112)
139 3gw4_A Uncharacterized protein 98.1 1.7E-05 5.9E-10 74.1 12.2 46 279-324 5-53 (203)
140 2qfc_A PLCR protein; TPR, HTH, 98.1 6.2E-05 2.1E-09 75.3 16.8 94 400-493 157-261 (293)
141 3q7a_A Farnesyltransferase alp 98.1 0.001 3.6E-08 67.1 25.5 223 98-325 57-330 (349)
142 3sz7_A HSC70 cochaperone (SGT) 98.1 9.3E-06 3.2E-10 73.4 9.6 96 469-564 11-108 (164)
143 2fbn_A 70 kDa peptidylprolyl i 98.1 2E-06 6.7E-11 80.7 5.1 173 371-564 8-186 (198)
144 3q49_B STIP1 homology and U bo 98.1 2.2E-05 7.7E-10 68.0 11.3 98 467-564 7-106 (137)
145 1hxi_A PEX5, peroxisome target 98.1 8.8E-06 3E-10 69.4 8.3 95 471-565 19-115 (121)
146 1elw_A TPR1-domain of HOP; HOP 98.1 6E-05 2.1E-09 62.8 13.4 107 436-544 7-115 (118)
147 2vgx_A Chaperone SYCD; alterna 98.1 7.9E-06 2.7E-10 72.5 7.9 102 434-537 22-125 (148)
148 2lni_A Stress-induced-phosphop 98.1 2.3E-05 7.7E-10 67.3 10.6 99 466-564 13-113 (133)
149 1a17_A Serine/threonine protei 98.1 8.5E-05 2.9E-09 66.6 14.8 91 370-461 16-109 (166)
150 1elw_A TPR1-domain of HOP; HOP 98.0 3E-05 1E-09 64.8 11.0 98 468-565 3-102 (118)
151 3q7a_A Farnesyltransferase alp 98.0 0.0018 6.3E-08 65.3 25.4 171 308-484 65-257 (349)
152 1na0_A Designed protein CTPR3; 98.0 0.00012 4.1E-09 61.6 14.6 92 369-461 11-105 (125)
153 2dba_A Smooth muscle cell asso 98.0 3.5E-05 1.2E-09 67.6 11.4 96 468-563 27-127 (148)
154 2e2e_A Formate-dependent nitri 98.0 3.7E-05 1.3E-09 70.2 11.6 127 409-538 21-152 (177)
155 1wao_1 Serine/threonine protei 98.0 2.1E-05 7.2E-10 84.7 11.2 116 443-560 16-135 (477)
156 3gyz_A Chaperone protein IPGC; 98.0 3.2E-05 1.1E-09 68.7 10.5 95 94-191 35-130 (151)
157 1wao_1 Serine/threonine protei 98.0 9.3E-05 3.2E-09 79.6 16.0 119 371-493 10-134 (477)
158 2c2l_A CHIP, carboxy terminus 98.0 8E-05 2.7E-09 74.0 13.9 94 232-326 5-101 (281)
159 4gcn_A Protein STI-1; structur 98.0 2.2E-05 7.7E-10 67.5 8.4 94 470-563 9-111 (127)
160 2xcb_A PCRH, regulatory protei 97.9 4E-05 1.4E-09 67.3 10.0 104 435-540 20-125 (142)
161 2dba_A Smooth muscle cell asso 97.9 0.00013 4.6E-09 63.8 12.6 113 397-545 27-143 (148)
162 2vyi_A SGTA protein; chaperone 97.9 0.00025 8.4E-09 60.2 14.0 91 401-494 15-105 (131)
163 3upv_A Heat shock protein STI1 97.9 9.5E-05 3.3E-09 63.1 11.0 104 439-544 10-121 (126)
164 2hr2_A Hypothetical protein; a 97.9 3.8E-05 1.3E-09 67.8 8.4 61 503-563 59-130 (159)
165 3sz7_A HSC70 cochaperone (SGT) 97.9 0.0001 3.6E-09 66.3 11.8 107 434-542 12-120 (164)
166 3rkv_A Putative peptidylprolyl 97.9 9.7E-05 3.3E-09 66.3 11.3 64 501-564 63-126 (162)
167 3dss_A Geranylgeranyl transfer 97.8 0.0021 7.2E-08 64.5 21.8 131 348-482 90-240 (331)
168 3dss_A Geranylgeranyl transfer 97.8 0.0017 5.9E-08 65.2 21.1 179 383-564 90-304 (331)
169 2xev_A YBGF; tetratricopeptide 97.8 5.2E-05 1.8E-09 64.9 7.8 91 474-564 7-105 (129)
170 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00022 7.7E-09 76.2 14.3 160 381-562 248-413 (457)
171 2kck_A TPR repeat; tetratricop 97.8 0.0001 3.5E-09 60.8 9.1 93 398-493 6-101 (112)
172 4gcn_A Protein STI-1; structur 97.8 0.00023 7.8E-09 61.0 11.4 90 370-461 11-111 (127)
173 3q49_B STIP1 homology and U bo 97.7 0.00014 4.7E-09 62.9 10.1 98 434-533 10-109 (137)
174 3k9i_A BH0479 protein; putativ 97.7 1.9E-05 6.5E-10 66.7 4.4 83 482-564 3-90 (117)
175 1elr_A TPR2A-domain of HOP; HO 97.7 9E-05 3.1E-09 63.1 8.5 95 470-564 5-108 (131)
176 4b4t_Q 26S proteasome regulato 97.7 0.00095 3.2E-08 70.5 18.3 122 373-494 101-241 (434)
177 2fbn_A 70 kDa peptidylprolyl i 97.7 0.00011 3.7E-09 68.6 9.6 144 341-489 13-176 (198)
178 1p5q_A FKBP52, FK506-binding p 97.7 0.00021 7.2E-09 73.0 12.5 137 179-316 127-283 (336)
179 1elr_A TPR2A-domain of HOP; HO 97.7 0.00011 3.7E-09 62.6 7.9 62 399-461 5-66 (131)
180 4b4t_Q 26S proteasome regulato 97.7 0.0074 2.5E-07 63.5 24.1 162 300-461 58-244 (434)
181 3ro3_A PINS homolog, G-protein 97.6 0.00012 4.1E-09 64.9 8.1 137 399-563 10-157 (164)
182 2xev_A YBGF; tetratricopeptide 97.6 0.00049 1.7E-08 58.6 11.4 66 472-537 42-112 (129)
183 3ro3_A PINS homolog, G-protein 97.6 0.00053 1.8E-08 60.6 11.7 126 368-493 10-153 (164)
184 1hxi_A PEX5, peroxisome target 97.6 0.00035 1.2E-08 59.2 9.9 91 442-534 26-118 (121)
185 1ihg_A Cyclophilin 40; ppiase 97.6 0.00024 8.3E-09 73.5 10.6 138 398-556 223-362 (370)
186 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00015 5.3E-09 74.1 8.7 148 398-565 179-329 (338)
187 2hr2_A Hypothetical protein; a 97.5 0.00015 5.1E-09 64.0 6.6 71 471-541 59-142 (159)
188 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00029 9.9E-09 72.0 9.8 152 367-535 179-333 (338)
189 3ma5_A Tetratricopeptide repea 97.5 0.00032 1.1E-08 57.1 8.1 64 500-563 6-69 (100)
190 1dce_A Protein (RAB geranylger 97.5 0.0029 1E-07 69.2 18.1 169 382-553 44-244 (567)
191 2l6j_A TPR repeat-containing p 97.4 0.00028 9.7E-09 58.2 7.3 93 467-559 2-102 (111)
192 3k9i_A BH0479 protein; putativ 97.4 0.00012 4.3E-09 61.5 4.5 66 471-536 29-96 (117)
193 1ihg_A Cyclophilin 40; ppiase 97.4 0.001 3.6E-08 68.7 12.3 113 433-564 223-336 (370)
194 3n71_A Histone lysine methyltr 97.4 0.00058 2E-08 73.0 10.5 97 470-566 352-466 (490)
195 3rkv_A Putative peptidylprolyl 97.3 0.00043 1.5E-08 62.0 7.8 76 469-544 63-141 (162)
196 1na3_A Designed protein CTPR2; 97.3 0.00079 2.7E-08 53.1 8.0 81 469-549 9-91 (91)
197 2kat_A Uncharacterized protein 97.3 0.00055 1.9E-08 57.1 7.2 77 487-563 3-81 (115)
198 3bee_A Putative YFRE protein; 97.2 0.0015 5.3E-08 52.1 8.4 69 498-566 3-74 (93)
199 1kt0_A FKBP51, 51 kDa FK506-bi 97.1 0.0029 9.8E-08 67.5 13.0 120 366-489 267-405 (457)
200 1zu2_A Mitochondrial import re 97.1 0.0002 6.7E-09 63.1 3.1 85 481-565 14-121 (158)
201 2l6j_A TPR repeat-containing p 97.0 0.0014 4.8E-08 53.8 7.3 66 500-565 3-68 (111)
202 3n71_A Histone lysine methyltr 97.0 0.0015 5.3E-08 69.8 9.2 113 479-609 319-449 (490)
203 1klx_A Cysteine rich protein B 97.0 0.0069 2.4E-07 52.4 11.4 90 475-566 31-128 (138)
204 3qwp_A SET and MYND domain-con 96.9 0.0018 6.1E-08 68.2 8.4 89 503-609 331-427 (429)
205 1dce_A Protein (RAB geranylger 96.8 0.022 7.6E-07 62.2 16.5 150 410-563 40-220 (567)
206 1na3_A Designed protein CTPR2; 96.8 0.0032 1.1E-07 49.4 7.0 64 501-564 9-72 (91)
207 1klx_A Cysteine rich protein B 96.6 0.033 1.1E-06 48.1 13.3 109 312-428 10-127 (138)
208 1zu2_A Mitochondrial import re 96.5 0.0012 4E-08 58.2 3.0 101 409-535 13-125 (158)
209 3ly7_A Transcriptional activat 96.4 0.029 1E-06 56.6 12.6 144 394-565 190-340 (372)
210 3ma5_A Tetratricopeptide repea 96.4 0.0099 3.4E-07 48.0 7.6 60 399-460 8-68 (100)
211 1wy6_A Hypothetical protein ST 96.3 0.4 1.4E-05 40.0 16.8 140 409-567 18-157 (172)
212 3lvg_A Clathrin heavy chain 1; 96.2 0.0038 1.3E-07 64.2 5.2 395 58-491 53-534 (624)
213 3qww_A SET and MYND domain-con 96.2 0.0068 2.3E-07 63.6 7.2 61 503-563 342-410 (433)
214 2kat_A Uncharacterized protein 96.1 0.021 7.2E-07 47.1 8.5 75 112-189 3-77 (115)
215 2kc7_A BFR218_protein; tetratr 96.0 0.01 3.5E-07 47.5 6.0 53 511-563 10-63 (99)
216 3mkq_A Coatomer beta'-subunit; 96.0 0.11 3.7E-06 59.6 16.7 152 379-559 611-773 (814)
217 3lvg_A Clathrin heavy chain 1; 95.7 0.0033 1.1E-07 64.6 1.9 237 165-418 54-324 (624)
218 3mkq_A Coatomer beta'-subunit; 95.6 0.19 6.5E-06 57.5 16.5 153 104-292 609-762 (814)
219 3qww_A SET and MYND domain-con 95.5 0.057 2E-06 56.6 10.7 59 470-528 341-409 (433)
220 2kc7_A BFR218_protein; tetratr 95.5 0.038 1.3E-06 43.9 7.5 64 475-538 6-72 (99)
221 1pc2_A Mitochondria fission pr 95.5 0.034 1.2E-06 48.2 7.4 65 499-563 30-99 (152)
222 3qwp_A SET and MYND domain-con 95.5 0.086 2.9E-06 55.2 11.9 67 471-537 331-412 (429)
223 3ly7_A Transcriptional activat 95.2 0.14 4.6E-06 51.7 11.8 38 528-565 270-307 (372)
224 3u64_A Protein TP_0956; tetrat 95.0 0.051 1.7E-06 52.6 7.5 87 485-571 179-276 (301)
225 3mkq_B Coatomer subunit alpha; 94.5 0.67 2.3E-05 41.2 12.9 129 375-527 13-141 (177)
226 3bee_A Putative YFRE protein; 94.4 0.24 8.2E-06 39.1 9.0 77 466-543 3-84 (93)
227 3mkq_B Coatomer subunit alpha; 94.1 1.4 4.9E-05 39.1 14.3 130 172-323 12-141 (177)
228 2v5f_A Prolyl 4-hydroxylase su 92.9 0.43 1.5E-05 38.4 8.4 71 471-541 7-86 (104)
229 1nzn_A CGI-135 protein, fissio 92.6 0.58 2E-05 39.0 8.6 65 499-563 33-102 (126)
230 4gns_B Protein CSD3, chitin bi 92.2 0.28 9.6E-06 54.6 8.3 54 509-562 345-398 (754)
231 1pc2_A Mitochondria fission pr 90.8 1.5 5.2E-05 37.9 9.6 75 351-426 17-99 (152)
232 1wy6_A Hypothetical protein ST 90.2 7.5 0.00026 32.6 13.8 84 379-465 73-156 (172)
233 1y8m_A FIS1; mitochondria, unk 89.9 6 0.0002 33.5 12.3 66 498-563 36-105 (144)
234 3u64_A Protein TP_0956; tetrat 89.9 2.4 8.4E-05 40.9 11.2 86 348-433 179-277 (301)
235 2v5f_A Prolyl 4-hydroxylase su 88.8 1.4 4.9E-05 35.2 7.7 65 500-564 4-75 (104)
236 4ady_A RPN2, 26S proteasome re 88.3 40 0.0014 38.4 23.0 23 98-120 233-256 (963)
237 4h7y_A Dual specificity protei 85.6 3.4 0.00011 35.4 8.1 94 94-190 12-119 (161)
238 2wpv_A GET4, UPF0363 protein Y 85.6 28 0.00097 34.0 19.6 167 167-359 35-215 (312)
239 1nzn_A CGI-135 protein, fissio 84.9 5.5 0.00019 33.0 9.0 33 506-538 79-111 (126)
240 1qsa_A Protein (soluble lytic 84.1 52 0.0018 35.7 26.5 115 412-529 228-347 (618)
241 1v54_E Cytochrome C oxidase po 83.9 4.2 0.00014 32.0 7.2 64 413-478 25-88 (109)
242 2qx5_A Nucleoporin NIC96; mRNA 82.5 21 0.00071 39.1 15.0 81 303-394 300-383 (661)
243 3lpz_A GET4 (YOR164C homolog); 81.7 43 0.0015 33.0 22.3 167 167-359 37-214 (336)
244 3ffl_A Anaphase-promoting comp 81.5 8.8 0.0003 33.4 9.3 29 469-497 122-150 (167)
245 2p58_C Putative type III secre 81.0 17 0.0006 28.4 9.6 86 245-335 21-106 (116)
246 2wpv_A GET4, UPF0363 protein Y 80.7 44 0.0015 32.6 20.7 167 269-461 36-216 (312)
247 2uwj_G Type III export protein 79.8 16 0.00056 28.5 9.1 86 245-335 20-105 (115)
248 2uwj_G Type III export protein 79.7 20 0.00068 28.0 10.8 87 347-438 21-107 (115)
249 2p58_C Putative type III secre 79.1 21 0.00072 28.0 10.0 87 347-438 22-108 (116)
250 4gns_B Protein CSD3, chitin bi 78.0 46 0.0016 37.0 16.1 54 239-293 345-398 (754)
251 2ff4_A Probable regulatory pro 76.9 4.3 0.00015 41.6 7.1 60 504-563 174-233 (388)
252 3o48_A Mitochondria fission 1 76.7 8.6 0.00029 32.1 7.4 45 518-562 60-105 (134)
253 2y69_E Cytochrome C oxidase su 76.2 10 0.00035 31.6 7.6 63 414-478 69-131 (152)
254 4h7y_A Dual specificity protei 75.1 39 0.0013 28.9 13.0 66 309-375 72-137 (161)
255 2ff4_A Probable regulatory pro 74.1 13 0.00045 37.9 9.9 68 403-471 176-247 (388)
256 4b4t_P 26S proteasome regulato 71.9 96 0.0033 32.0 17.9 312 210-566 30-388 (445)
257 3lpz_A GET4 (YOR164C homolog); 71.1 83 0.0028 31.0 22.7 166 269-461 38-215 (336)
258 4ady_A RPN2, 26S proteasome re 69.6 1.6E+02 0.0054 33.6 32.6 214 276-495 384-620 (963)
259 1v54_E Cytochrome C oxidase po 66.9 28 0.00095 27.4 7.7 63 109-173 25-87 (109)
260 4fhn_B Nucleoporin NUP120; pro 66.8 36 0.0012 40.3 12.8 168 168-353 815-992 (1139)
261 3ffl_A Anaphase-promoting comp 62.8 72 0.0025 27.7 10.5 115 167-294 22-150 (167)
262 4fhn_B Nucleoporin NUP120; pro 62.8 42 0.0014 39.7 12.3 63 504-566 902-969 (1139)
263 1wdy_A 2-5A-dependent ribonucl 59.2 64 0.0022 30.2 11.2 54 277-331 156-213 (285)
264 1zbp_A Hypothetical protein VP 57.6 68 0.0023 30.4 10.2 50 443-494 7-56 (273)
265 1zbp_A Hypothetical protein VP 54.4 19 0.00065 34.2 5.8 55 479-533 7-63 (273)
266 1wdy_A 2-5A-dependent ribonucl 52.7 1.1E+02 0.0037 28.5 11.6 14 480-493 227-240 (285)
267 3o48_A Mitochondria fission 1 52.5 1E+02 0.0034 25.7 9.8 29 507-535 84-112 (134)
268 2y69_E Cytochrome C oxidase su 52.4 60 0.002 27.1 7.7 62 110-173 69-130 (152)
269 3esl_A Checkpoint serine/threo 51.6 1.3E+02 0.0046 26.9 10.7 106 487-618 62-173 (202)
270 2qx5_A Nucleoporin NIC96; mRNA 51.0 2.7E+02 0.0094 30.3 16.1 47 94-142 152-198 (661)
271 3ltj_A Alpharep-4; protein eng 49.1 1.4E+02 0.0047 26.3 18.7 80 264-347 26-105 (201)
272 1qsa_A Protein (soluble lytic 48.1 2.9E+02 0.01 29.8 36.9 432 104-566 16-481 (618)
273 4b4t_R RPN7, 26S proteasome re 46.4 85 0.0029 32.2 10.1 95 369-463 133-238 (429)
274 3ltj_A Alpharep-4; protein eng 45.9 1.5E+02 0.0053 25.9 17.9 18 264-281 119-136 (201)
275 2l0z_A Glycoprotein G2; zinc-b 44.9 6.6 0.00023 24.6 0.7 18 685-702 11-29 (42)
276 4b4t_R RPN7, 26S proteasome re 40.8 74 0.0025 32.7 8.5 96 400-495 133-234 (429)
277 4b4t_P 26S proteasome regulato 40.4 3.2E+02 0.011 28.0 26.2 116 107-224 29-165 (445)
278 3ltm_A Alpha-REP4; protein eng 39.5 2E+02 0.0069 25.4 17.1 18 264-281 124-141 (211)
279 3ltm_A Alpha-REP4; protein eng 39.4 2E+02 0.0069 25.4 18.2 18 330-347 93-110 (211)
280 1y8m_A FIS1; mitochondria, unk 39.0 1.7E+02 0.006 24.6 10.9 34 506-539 82-115 (144)
281 2nsz_A Programmed cell death p 38.1 1.1E+02 0.0037 25.2 7.5 64 370-433 10-78 (129)
282 3txn_A 26S proteasome regulato 36.2 3.5E+02 0.012 27.2 17.0 88 466-566 253-345 (394)
283 2ko4_A Mediator of RNA polymer 35.1 35 0.0012 25.2 3.3 40 82-121 23-63 (81)
284 1k1a_A B-cell lymphoma 3-encod 34.3 2.4E+02 0.0081 25.3 10.4 83 104-192 16-103 (241)
285 3hra_A Ankyrin repeat family p 33.7 2E+02 0.0067 25.0 9.4 55 277-331 114-172 (201)
286 3hra_A Ankyrin repeat family p 32.7 1.6E+02 0.0055 25.6 8.6 81 104-190 12-94 (201)
287 3jxi_A Vanilloid receptor-rela 32.5 75 0.0026 29.5 6.6 95 98-193 6-118 (260)
288 1oai_A Nuclear RNA export fact 32.2 30 0.001 24.2 2.5 26 106-131 32-57 (59)
289 4b4t_S RPN3, 26S proteasome re 31.0 2.4E+02 0.0083 29.5 10.3 146 95-262 231-392 (523)
290 1k1a_A B-cell lymphoma 3-encod 30.6 2.9E+02 0.01 24.6 12.2 82 137-219 13-99 (241)
291 2ion_A PDCD4, programmed cell 29.9 1E+02 0.0035 26.3 6.2 63 370-432 12-79 (152)
292 2d2s_A Exocyst complex compone 29.5 1.5E+02 0.005 27.5 7.7 86 405-494 25-116 (235)
293 1n11_A Ankyrin; clathrin, BAND 29.2 4.3E+02 0.015 26.4 12.4 19 172-190 84-102 (437)
294 3kea_A K1L; tropism, ANK repea 29.1 2.9E+02 0.01 25.9 10.3 18 172-189 66-83 (285)
295 2zu6_B Programmed cell death p 29.0 2.1E+02 0.0071 27.7 9.0 28 168-195 6-33 (307)
296 4a1g_A Mitotic checkpoint seri 28.6 2.7E+02 0.0093 23.6 9.5 48 519-566 83-132 (152)
297 3eu9_A Huntingtin-interacting 28.4 1.3E+02 0.0044 27.0 7.4 17 174-190 48-64 (240)
298 2zu6_B Programmed cell death p 28.3 3.4E+02 0.012 26.2 10.3 60 401-461 169-230 (307)
299 2nsz_A Programmed cell death p 27.8 2.5E+02 0.0086 23.0 9.0 64 269-332 10-78 (129)
300 3kea_A K1L; tropism, ANK repea 27.3 1.3E+02 0.0046 28.4 7.4 87 476-567 133-220 (285)
301 2r9g_A AAA ATPase, central reg 26.9 3.3E+02 0.011 24.4 8.9 89 202-291 17-113 (204)
302 3ljn_A Hypothetical protein; a 26.1 2E+02 0.007 28.1 8.9 15 277-291 181-195 (364)
303 2ion_A PDCD4, programmed cell 24.5 2.4E+02 0.0082 23.9 7.6 63 269-331 12-79 (152)
304 2d2s_A Exocyst complex compone 24.4 2.7E+02 0.0093 25.7 8.5 22 202-223 24-45 (235)
305 4g8k_A 2-5A-dependent ribonucl 24.1 4.7E+02 0.016 24.9 12.0 286 134-432 26-328 (337)
306 3i5p_A Nucleoporin NUP170; hel 23.8 5.9E+02 0.02 26.7 11.8 68 498-565 175-247 (525)
307 1oyz_A Hypothetical protein YI 23.6 4.4E+02 0.015 24.3 22.6 18 365-382 140-157 (280)
308 3jxi_A Vanilloid receptor-rela 23.0 1.2E+02 0.0042 27.9 6.1 52 206-257 12-72 (260)
309 3ljn_A Hypothetical protein; a 22.9 1.6E+02 0.0053 29.0 7.2 14 481-494 253-266 (364)
310 3eu9_A Huntingtin-interacting 22.6 3.5E+02 0.012 23.9 9.3 50 175-229 16-68 (240)
311 2pk8_A Uncharacterized protein 22.4 54 0.0018 25.0 2.5 47 592-645 13-59 (103)
312 1n11_A Ankyrin; clathrin, BAND 22.3 3.8E+02 0.013 26.8 10.4 43 170-213 16-61 (437)
313 2wvi_A Mitotic checkpoint seri 22.1 3.8E+02 0.013 23.1 9.7 47 520-566 79-127 (164)
314 2fe3_A Peroxide operon regulat 20.6 1.5E+02 0.0052 24.8 5.5 64 422-487 11-74 (145)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.5e-42 Score=384.42 Aligned_cols=485 Identities=10% Similarity=-0.017 Sum_probs=401.9
Q ss_pred hccccccCCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc
Q 005305 64 QGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIG 142 (703)
Q Consensus 64 ~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~ 142 (703)
.....+.+++....+ +..|+.+|.+ ++..|+.++. +.+.|++++|+.+|++|... .|+..++..+..+|..
T Consensus 58 ~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~ 129 (597)
T 2xpi_A 58 YLANNTSTDGSFLKE---RNAQNTDSLS--REDYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCC 129 (597)
T ss_dssp GGC------------------------C--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHH
T ss_pred hhcccccccCccCCC---CCccccchHH--HHHHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHH
Confidence 344557778888888 9999999876 9999999999 99999999999999999864 5788999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCC-------------------CcccHHHHH
Q 005305 143 LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER-------------------NLVSCNMII 203 (703)
Q Consensus 143 ~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-------------------d~~~~~~li 203 (703)
.|++++|.++++.+... ++++.+++.++.+|.++|++++|+++|+++... ++.+|+.++
T Consensus 130 ~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 207 (597)
T 2xpi_A 130 TGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG 207 (597)
T ss_dssp TTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHH
Confidence 99999999999988654 688999999999999999999999999955433 478999999
Q ss_pred HHHHhCCChhHHHHHHHHhHHcCCCCC-hhhHHHHHHHHhcCCChHHH--HHH-HHHHHHhCCCCcHHHHHHHHHHHHhC
Q 005305 204 AGMIDSGDYLEAFLLFLDLWEEFSDCG-SRTFATMIRASAGLELISVG--KQL-HSCALKMGFGDNVFVSCALIDMYSKC 279 (703)
Q Consensus 204 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a--~~~-~~~~~~~g~~~~~~~~~~Li~~y~~~ 279 (703)
.+|.+.|++++|+++|++|.+.+ |+ ...+..+...+...+..+.. ..+ +..+...+......+++.++.+|.+.
T Consensus 208 ~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (597)
T 2xpi_A 208 QVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999998864 43 33444444433332222111 111 33444444445566778889999999
Q ss_pred CCHHHHHHHHhhcCC--CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHH
Q 005305 280 GSIEDAQGVFDEMSE--KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAG 357 (703)
Q Consensus 280 g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 357 (703)
|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.++...|+.++|..++..
T Consensus 286 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 286 DELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999987 789999999999999999999999999999865 34778899999999999999999999999
Q ss_pred HHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHH
Q 005305 358 LVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHV 434 (703)
Q Consensus 358 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 434 (703)
+.+.. +.+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ .++..
T Consensus 365 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 442 (597)
T 2xpi_A 365 LVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHL 442 (597)
T ss_dssp HHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSH
T ss_pred HHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchH
Confidence 99764 4578899999999999999999999999884 3568899999999999999999999999999853 33678
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHH
Q 005305 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-------PFKTT--KNMWA 505 (703)
Q Consensus 435 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~~~ 505 (703)
++..++.+|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++ +..|+ ..+|.
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~ 520 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWA 520 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 9999999999999999999999999873 3457889999999999999999999999886 55777 78999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 506 ALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 506 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
.++.+|...|++++|...++++++.+|+++.+|..++.+|.+.|++++|.+.++++.+..
T Consensus 521 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 521 NLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999998643
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-38 Score=356.23 Aligned_cols=480 Identities=8% Similarity=-0.029 Sum_probs=411.8
Q ss_pred chhhhhhhccccccCCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHH
Q 005305 57 VECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDA 135 (703)
Q Consensus 57 ~~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ 135 (703)
.++..++.++..|.+.|++.+| ..+|+++....||..+|+.+.. |.+.|++++|+.+|+.+.. .+++..+++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A---~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~ 155 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCA---AFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYL 155 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHH---HHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHH---HHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHH
Confidence 4778899999999999999999 9999998766678899999999 9999999999999999865 3678999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHh---------------CCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCC---cc
Q 005305 136 LISACIGLRSIREVKRVFSYMLST---------------GFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERN---LV 197 (703)
Q Consensus 136 ll~~~~~~~~~~~a~~l~~~~~~~---------------g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d---~~ 197 (703)
++.++.+.|++++|.++++.+... |.+++..+++.++.+|.+.|++++|+++|++|.+.+ ..
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 235 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE 235 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhH
Confidence 999999999999999999853211 223357899999999999999999999999997633 34
Q ss_pred cHHHHHHHHHhCCChhHHHH--H-HHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 005305 198 SCNMIIAGMIDSGDYLEAFL--L-FLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274 (703)
Q Consensus 198 ~~~~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 274 (703)
.|..+...+...+..+.+.. + +..+...+..++..+|..++..+.+.|++++|.+++..+.+. +++..+++.++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 45555554444333222221 1 555555555556667788888999999999999999998766 589999999999
Q ss_pred HHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHH
Q 005305 275 MYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351 (703)
Q Consensus 275 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 351 (703)
+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|++|.+.. +.+..++..+...+.+.|++++|
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 392 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEA 392 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999853 477899999999999999999999999998653 55788999999999999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 005305 352 KQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNG 428 (703)
Q Consensus 352 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 428 (703)
.++++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+..
T Consensus 393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999864 3368899999999999999999999999884 3478899999999999999999999999999863
Q ss_pred CCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhc---CCCCc--hHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CH
Q 005305 429 MRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDH---KIKPR--AMHYACMIELLGREGLLDEAFALIRGAP-FKT-TK 501 (703)
Q Consensus 429 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~ 501 (703)
..+..+|..+...|.+.|++++|.++|+.+.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++. ..| +.
T Consensus 472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 3367899999999999999999999999997732 66787 7899999999999999999999998852 234 78
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 005305 502 NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547 (703)
Q Consensus 502 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 547 (703)
.+|..+..+|...|++++|...++++++++|+++..|..|+++|..
T Consensus 551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 551 NVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999988753
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5.1e-27 Score=254.63 Aligned_cols=184 Identities=15% Similarity=0.209 Sum_probs=167.2
Q ss_pred ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCC---------HHHHHHHHHHHHHcCCCCchH
Q 005305 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS---------LEHAKQAHAGLVRHGFGLDIV 368 (703)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 368 (703)
..++.+|.+|++.|+.++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35788899999999999999999999999999999999999999987654 688999999999999999999
Q ss_pred HHHHHHhhHHhcCCHHHHHHHhhhcC----cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005305 369 ANSALVDFYSKWGRIEDARHVFDKML----CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444 (703)
Q Consensus 369 ~~~~Li~~y~k~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 444 (703)
+||+||++|++.|++++|.++|++|. .||.++||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999984 57999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhc
Q 005305 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482 (703)
Q Consensus 445 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 482 (703)
+.|++++|.++|++|.+ .+..|+..+|+.+++.|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999987 69999999999999988754
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=7.5e-27 Score=253.33 Aligned_cols=211 Identities=11% Similarity=0.016 Sum_probs=170.1
Q ss_pred HHHHHHHHhHHcCCCCCh-hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 005305 214 EAFLLFLDLWEEFSDCGS-RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292 (703)
Q Consensus 214 ~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m 292 (703)
.+..+.+++.+.+..+.+ ..+..+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 345556666666655443 346777788888888888888888888888888888888888877776653221
Q ss_pred CCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHH
Q 005305 293 SEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSA 372 (703)
Q Consensus 293 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 372 (703)
.+.+..++|.++|++|...|+.||..||+++|.+|++.|+++.|.+++++|.+.|+.||..+||+
T Consensus 81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~ 145 (501)
T 4g26_A 81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP 145 (501)
T ss_dssp ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence 12445688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhHHhcCCHHHHHHHhhhc----CcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHcc
Q 005305 373 LVDFYSKWGRIEDARHVFDKM----LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 446 (703)
||.+|++.|++++|.++|++| ..||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|...
T Consensus 146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999 46899999999999999999999999999999999999999999999988764
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.6e-24 Score=228.29 Aligned_cols=372 Identities=12% Similarity=0.065 Sum_probs=235.6
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhH
Q 005305 138 SACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLE 214 (703)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~ 214 (703)
..+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++.... .+..+|+.+...|.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 34455666666666666666553 33334445555566666666666666654432 344456666666666666666
Q ss_pred HHHHHHHhHHcCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 005305 215 AFLLFLDLWEEFSDCG-SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293 (703)
Q Consensus 215 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 293 (703)
|++.|+++.+. .|+ ..++..+..++...|++++|.+.+..+++.. +.+..++..+...|.
T Consensus 86 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~---------------- 146 (388)
T 1w3b_A 86 AIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLK---------------- 146 (388)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH----------------
Confidence 66666665543 222 2234444444555555555555554444433 222333444444444
Q ss_pred CCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHH
Q 005305 294 EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSAL 373 (703)
Q Consensus 294 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 373 (703)
..|++++|.+.|+++.+.. +.+..++..+...+...|+++.|...++.+++.+. .+...+..+
T Consensus 147 ---------------~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 209 (388)
T 1w3b_A 147 ---------------ALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINL 209 (388)
T ss_dssp ---------------TTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred ---------------HccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHH
Confidence 4444444444444444331 11233444444444455555555555555544332 234556666
Q ss_pred HhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCH
Q 005305 374 VDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLS 449 (703)
Q Consensus 374 i~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 449 (703)
...|...|++++|...|++.. ..+..+|..+...|...|++++|+..|+++.+. .|+ ..++..+..++.+.|++
T Consensus 210 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 287 (388)
T 1w3b_A 210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSV 287 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCH
Confidence 677777777777777777653 235667788888888888888888888888874 443 46777888888888888
Q ss_pred HHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 450 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
++|...|+.+.+. .+++...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++
T Consensus 288 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 288 AEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888772 4566778888888888888888888888874 3334 4678888888889999999999999999
Q ss_pred hCCCCCCcchHHHHHHHHHhCCC
Q 005305 528 YGMEPEKLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 528 ~~~~p~~~~~~~~l~~~y~~~g~ 550 (703)
++++|+++..|..++.+|...|+
T Consensus 366 ~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 366 IRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HhhCCCCHHHHHhHHHHHHHccC
Confidence 99999988888888888877663
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.4e-23 Score=222.50 Aligned_cols=353 Identities=18% Similarity=0.136 Sum_probs=304.3
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHcCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCC
Q 005305 202 IIAGMIDSGDYLEAFLLFLDLWEEFSDCG-SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG 280 (703)
Q Consensus 202 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 280 (703)
+...+.+.|++++|+..+.++.+. .|+ ...+..+...+...|++++|...+..+++.. +.+..++..+...|.+.|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC
Confidence 345667889999999999888765 344 4456666677788899999999998888875 678889999999999999
Q ss_pred CHHHHHHHHhhcCC--C-CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHhccCCHHHHHHHHH
Q 005305 281 SIEDAQGVFDEMSE--K-TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDH-FTFSMIIRICTRLASLEHAKQAHA 356 (703)
Q Consensus 281 ~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~ 356 (703)
++++|.+.|+++.. | +..+|..+...+.+.|++++|++.|+++.+. .|+. ..+..+...+...|++++|...+.
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998753 3 4557999999999999999999999999886 4554 456667777888999999999999
Q ss_pred HHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-
Q 005305 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN- 432 (703)
Q Consensus 357 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~- 432 (703)
.+++... .+..+++.+...|.+.|++++|...|+++.. .+...|..+...+...|++++|+..|++.... .|+
T Consensus 160 ~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~ 236 (388)
T 1w3b_A 160 KAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNH 236 (388)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTC
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCC
Confidence 9998743 3678899999999999999999999999843 35668899999999999999999999999885 554
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 005305 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP--FKTTKNMWAALLTA 510 (703)
Q Consensus 433 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~a 510 (703)
..++..+..++...|++++|...|+.+.+. -+.+...|..+...|.+.|++++|.+.++++. .+++..+|..+...
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 688889999999999999999999999872 33457789999999999999999999998752 24578899999999
Q ss_pred HHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 511 CRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 511 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+...|++++|...++++++..|+++..|..++.+|.+.|++++|.+.++++.+.
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999853
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.4e-21 Score=214.97 Aligned_cols=434 Identities=10% Similarity=-0.046 Sum_probs=214.6
Q ss_pred ccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 005305 96 GICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLM 174 (703)
Q Consensus 96 ~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~ 174 (703)
..|...-. +.+.|++++|+..|+++.... ||..+|..+..++...|++++|.+.++.+++.+ +.+..++..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 34555566 888999999999999998865 688889999999999999999999999998875 4556788888889
Q ss_pred HHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHH
Q 005305 175 HVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251 (703)
Q Consensus 175 y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 251 (703)
|.+.|++++|...|+++.. ++......++..+........+.+.+..+...+..|+...+..-..............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 9999999999988887643 2334444444444443333333333333222222222211111000000000000000
Q ss_pred HHHHHHHHhCC---------CCcHHHHHHHHHHHHh---CCCHHHHHHHHhhcCC----------------C-CcccHHH
Q 005305 252 QLHSCALKMGF---------GDNVFVSCALIDMYSK---CGSIEDAQGVFDEMSE----------------K-TTVGWNT 302 (703)
Q Consensus 252 ~~~~~~~~~g~---------~~~~~~~~~Li~~y~~---~g~~~~A~~~f~~m~~----------------~-~~~~~~~ 302 (703)
.+...+..... +.+...+..+...+.. .|++++|...|+++.+ + +...|..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 00000000000 1122333333333332 4555555555554332 0 1234444
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCC
Q 005305 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382 (703)
Q Consensus 303 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 382 (703)
+...+...|++++|+..|+++.+.. |+...+..+...+...|+++.|...+..+++... .+..++..+...|.+.|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCC
Confidence 5555555555555555555555432 2244444444555555555555555555544321 233444555555555555
Q ss_pred HHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 005305 383 IEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQS 458 (703)
Q Consensus 383 ~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 458 (703)
+++|...|++.. ..+...|..+...|...|++++|+..|+++.+. .| +..++..+...+...|++++|...++.
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555555442 123344555555555555555555555555443 22 224444444555555555555555555
Q ss_pred hHhhcCCCCc----hHHHHHHHHHHHh---cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhC
Q 005305 459 MSRDHKIKPR----AMHYACMIELLGR---EGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYG 529 (703)
Q Consensus 459 m~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 529 (703)
+.+...-.++ ...+..+...|.+ .|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4432111111 2244455555555 55555555555442 1112 334445555555555555555555555555
Q ss_pred CCCCCcchH
Q 005305 530 MEPEKLSNY 538 (703)
Q Consensus 530 ~~p~~~~~~ 538 (703)
+.|+++..+
T Consensus 478 ~~~~~~~~~ 486 (514)
T 2gw1_A 478 LARTMEEKL 486 (514)
T ss_dssp HCSSHHHHH
T ss_pred hccccHHHH
Confidence 555544433
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=1.4e-20 Score=203.42 Aligned_cols=335 Identities=11% Similarity=0.040 Sum_probs=236.9
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 005305 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274 (703)
Q Consensus 195 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 274 (703)
++..|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+..+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34556666666667777777777776665542 2245556666666666666666666666666654 445666667777
Q ss_pred HHHhCCCHHHHHHHHhhcCCCCc------ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCH
Q 005305 275 MYSKCGSIEDAQGVFDEMSEKTT------VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348 (703)
Q Consensus 275 ~y~~~g~~~~A~~~f~~m~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 348 (703)
+|.+.|++++|.+.|+++.+.++ ..|..++..+...+ +..+...+...|++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTCH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCCH
Confidence 77777777777777776654322 44444443321111 11122234455666
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005305 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQML 425 (703)
Q Consensus 349 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 425 (703)
+.|...+..+++.. +.+..++..+..+|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..|+++.
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666543 2356777888888888888888888888774 3467788888899999999999999999888
Q ss_pred HcCCCcCH-HHHHHH------------HHHHHccCCHHHHHHHHHHhHhhcCCCCc-----hHHHHHHHHHHHhcCChHH
Q 005305 426 LNGMRPNH-VTFLAV------------LSACSRSGLSERGWEIFQSMSRDHKIKPR-----AMHYACMIELLGREGLLDE 487 (703)
Q Consensus 426 ~~g~~p~~-~t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~ 487 (703)
.. .|+. ..+..+ ..+|.+.|++++|..+|+.+.+. .|+ ..+|..++.++.+.|++++
T Consensus 239 ~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 239 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred Hh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 64 4544 333333 78899999999999999999873 344 4588999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHH------------HHHHhCC----
Q 005305 488 AFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL------------NIYNSSG---- 549 (703)
Q Consensus 488 A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~y~~~g---- 549 (703)
|.+.++++ ...| +...|..+..+|...|++++|...++++++++|+++..+..+. +.|...|
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 99999885 3344 6789999999999999999999999999999999999999998 4466666
Q ss_pred -ChHHHHHHHHH
Q 005305 550 -KLKEAAEVIRT 560 (703)
Q Consensus 550 -~~~~A~~~~~~ 560 (703)
+.+++.+.+++
T Consensus 394 ~~~~~~~~~y~~ 405 (450)
T 2y4t_A 394 AKKQEIIKAYRK 405 (450)
T ss_dssp CCTTHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 44556666654
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.5e-21 Score=210.94 Aligned_cols=393 Identities=11% Similarity=-0.048 Sum_probs=313.3
Q ss_pred chHHHHHHHHHhCCChHHHHHHHccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhc
Q 005305 166 YMRNRVLLMHVRCGMMIDARRLFDEMPE--RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG 243 (703)
Q Consensus 166 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 243 (703)
..+..+...|.+.|++++|+..|+++.. ||..+|..+..+|.+.|++++|+..|+++.+... .+..++..+..++..
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHH
Confidence 3566677889999999999999998864 7888999999999999999999999999987642 256688889999999
Q ss_pred CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHH----------------------------------
Q 005305 244 LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF---------------------------------- 289 (703)
Q Consensus 244 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f---------------------------------- 289 (703)
.|++++|...+..+.+.+ +++......++..+.+......+.+.+
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999998876 334444444444443322222222222
Q ss_pred ----hhcCC---------C-CcccHHHHHHHHHH---cCCcHHHHHHHHHHHH-----CCCCC--------CHhhHHHHH
Q 005305 290 ----DEMSE---------K-TTVGWNTIIAGYAL---HGYSEEALDLYYEMRD-----SGVKM--------DHFTFSMII 339 (703)
Q Consensus 290 ----~~m~~---------~-~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~p--------d~~t~~~ll 339 (703)
..... + +...|......+.. .|++++|+..|+++.+ ..-.| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 11110 0 12334444444444 8999999999999987 32122 345677778
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHH
Q 005305 340 RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEE 416 (703)
Q Consensus 340 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~ 416 (703)
..+...|+++.|...+..+++.... ..++..+...|...|++++|...|+++.. .+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8889999999999999999997654 88899999999999999999999998743 467789999999999999999
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-
Q 005305 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA- 495 (703)
Q Consensus 417 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 495 (703)
|+..|+++.+.... +..++..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999985322 4578888889999999999999999999873 3345678889999999999999999999874
Q ss_pred ---CCCCC----HHHHHHHHHHHHH---cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 496 ---PFKTT----KNMWAALLTACRV---NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 496 ---~~~p~----~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
+..|+ ...|..+...+.. .|++++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 22222 3488899999999 9999999999999999999999999999999999999999999999988643
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=2e-20 Score=207.07 Aligned_cols=419 Identities=11% Similarity=0.000 Sum_probs=270.4
Q ss_pred ccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHH
Q 005305 96 GICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLM 174 (703)
Q Consensus 96 ~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~ 174 (703)
..|..+.. +.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+..++..+...
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 45666667 999999999999999999875 5678889999999999999999999999999876 5567788888999
Q ss_pred HHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcC------CCCChhhHHHHHHHHhcCCChH
Q 005305 175 HVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEF------SDCGSRTFATMIRASAGLELIS 248 (703)
Q Consensus 175 y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~~~~~ 248 (703)
|.+.|++++|+..|+.+. .+....+..+..+...+...+|+..++++.... ..|+...
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~--------------- 166 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS--------------- 166 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH---------------
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH---------------
Confidence 999999999999996443 233333334555566666678888888775431 1222222
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcc---cHHHHHHHHH--------HcCCcHHHH
Q 005305 249 VGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV---GWNTIIAGYA--------LHGYSEEAL 317 (703)
Q Consensus 249 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~--------~~g~~~~A~ 317 (703)
+..|....+.+.+...+......+.. .+..+...+. ..|++++|+
T Consensus 167 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~ 222 (537)
T 3fp2_A 167 ------------------------LASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222 (537)
T ss_dssp ------------------------HHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred ------------------------HHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 22233334444444444443333222 1122211111 123556666
Q ss_pred HHHHHHHHCCCCCC--------HhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHH
Q 005305 318 DLYYEMRDSGVKMD--------HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389 (703)
Q Consensus 318 ~l~~~m~~~g~~pd--------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 389 (703)
.+|+++.+. .|+ ..++..+...+...|+++.|...+..+++.. |+..++..+...|.+.|++++|...
T Consensus 223 ~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~ 298 (537)
T 3fp2_A 223 DMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKF 298 (537)
T ss_dssp HHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHH
T ss_pred HHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHH
Confidence 666666543 222 1123444445556666667776666666653 3355666666677777777777777
Q ss_pred hhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCC
Q 005305 390 FDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKI 465 (703)
Q Consensus 390 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 465 (703)
|+++. ..+..+|..+...|...|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+++.+.+. .
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~ 374 (537)
T 3fp2_A 299 FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--F 374 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 76653 234566777777777777777777777777764 233 356666777777777777777777777662 2
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHHc----------CChhHHHHHHHHH
Q 005305 466 KPRAMHYACMIELLGREGLLDEAFALIRGAP----FKT----TKNMWAALLTACRVN----------GNLELGKFAAEKL 527 (703)
Q Consensus 466 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p----~~~~~~~ll~a~~~~----------g~~~~a~~~~~~~ 527 (703)
+.+...+..+...|.+.|++++|.+.++++. ..+ ....+..+...+... |++++|...++++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 3445567777777777777777777776531 011 122233444556666 8888888888888
Q ss_pred hCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 528 ~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
++..|+++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 455 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 455 CELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88888888888888888888899888888888877543
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=2.4e-19 Score=193.72 Aligned_cols=365 Identities=12% Similarity=0.028 Sum_probs=230.9
Q ss_pred CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHH
Q 005305 94 SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172 (703)
Q Consensus 94 ~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li 172 (703)
+...|..+.. +.+.|++++|+.+|+.+.+.. +.+..++..+..++...|++++|...++.+++.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 5567888888 999999999999999998864 5678889999999999999999999999999876 45577888889
Q ss_pred HHHHhCCChHHHHHHHccCCCCC---c---ccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCC
Q 005305 173 LMHVRCGMMIDARRLFDEMPERN---L---VSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL 246 (703)
Q Consensus 173 ~~y~~~g~~~~A~~~f~~m~~~d---~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 246 (703)
..|.+.|++++|.+.|+++.+.+ . ..|..++..+...+ +..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCC
Confidence 99999999999999998876532 2 55666654421111 1111222333444
Q ss_pred hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHH
Q 005305 247 ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEM 323 (703)
Q Consensus 247 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 323 (703)
+++|...+..+++.. +.+..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444544444444433 33455555555666666666666665555432 24455666666666666666666666666
Q ss_pred HHCCCCCCHh-hHHHH------------HHHHhccCCHHHHHHHHHHHHHcCCCCc---hHHHHHHHhhHHhcCCHHHHH
Q 005305 324 RDSGVKMDHF-TFSMI------------IRICTRLASLEHAKQAHAGLVRHGFGLD---IVANSALVDFYSKWGRIEDAR 387 (703)
Q Consensus 324 ~~~g~~pd~~-t~~~l------------l~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~k~g~~~~A~ 387 (703)
... .|+.. .+..+ ...+...|++++|...+..+++...... ..++..+..+|.+.|++++|.
T Consensus 238 ~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~ 315 (450)
T 2y4t_A 238 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI 315 (450)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 543 23222 22222 5566667777777777777766432211 336667777777777777777
Q ss_pred HHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHH------------HHHHccC----
Q 005305 388 HVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVL------------SACSRSG---- 447 (703)
Q Consensus 388 ~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll------------~a~~~~g---- 447 (703)
..++++. ..+...|..+..+|...|++++|+..|+++.+ +.|+. ..+..+. ..|...|
T Consensus 316 ~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~ 393 (450)
T 2y4t_A 316 RVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRN 393 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCcc
Confidence 7777763 23566777777777777888888888877776 45554 3333333 1233444
Q ss_pred -CHHHHHHHHHHhHhhcC--CCCc-------hHHHHHHHHHHHhcCChHHHH
Q 005305 448 -LSERGWEIFQSMSRDHK--IKPR-------AMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 448 -~~~~a~~~~~~m~~~~~--~~p~-------~~~~~~li~~~~~~g~~~~A~ 489 (703)
..+++.+.++.+..... ..|+ ...+..+..+|...|+.+++.
T Consensus 394 ~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 394 AKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp CCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 55667777765322111 0111 236777888888887776543
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=3e-18 Score=189.55 Aligned_cols=435 Identities=10% Similarity=-0.001 Sum_probs=302.4
Q ss_pred hhhhhccccccCCCCcccchhhcccccCccCCCC-CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHH
Q 005305 60 CLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKP-SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALI 137 (703)
Q Consensus 60 ~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p-~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll 137 (703)
..+..+-..|.+.|++.+| ...|.+.....| +...|..+.. +.+.|++++|++.|+++.+.+ +.+..++..+.
T Consensus 26 ~~~~~~g~~~~~~g~~~~A---~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 100 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEA---IKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-C---HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHH---HHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHH
Confidence 4455566677778999999 999988766544 5566777777 999999999999999999876 56788899999
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCC------CcccHHHHHHHHHhCCC
Q 005305 138 SACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPER------NLVSCNMIIAGMIDSGD 211 (703)
Q Consensus 138 ~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~------d~~~~~~li~~~~~~g~ 211 (703)
.++...|++++|...++ .... .|+. .+..+..+...+....|...++++... .....+..+..+....+
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFD 175 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcC
Confidence 99999999999999996 4332 2332 223344555666778899888887542 22334455666777777
Q ss_pred hhHHHHHHHHhHHcCCCCChhhHHHHHH-HHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHh
Q 005305 212 YLEAFLLFLDLWEEFSDCGSRTFATMIR-ASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFD 290 (703)
Q Consensus 212 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 290 (703)
.+.++..+..... ..+....+...+. .+...+ -......|++++|..+|+
T Consensus 176 ~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~---------------------------~~~~~a~~~~~~A~~~~~ 226 (537)
T 3fp2_A 176 SHLEVSSVNTSSN--YDTAYALLSDALQRLYSATD---------------------------EGYLVANDLLTKSTDMYH 226 (537)
T ss_dssp HHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSH---------------------------HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHHHHHHH
Confidence 7766655443321 1111111111111 111110 000111234566666666
Q ss_pred hcCCCCc----------ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHH
Q 005305 291 EMSEKTT----------VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVR 360 (703)
Q Consensus 291 ~m~~~~~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 360 (703)
++.+.++ .+|..+...+...|++++|+..|++..+. .|+...+..+...+...|+++.|...+..+++
T Consensus 227 ~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 304 (537)
T 3fp2_A 227 SLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVD 304 (537)
T ss_dssp HHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 5543221 13555566777888888888888888875 45567777788888888889999988888888
Q ss_pred cCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHH
Q 005305 361 HGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTF 436 (703)
Q Consensus 361 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~ 436 (703)
... .+..++..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|+++.+. .|+ ...+
T Consensus 305 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 381 (537)
T 3fp2_A 305 LNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVP 381 (537)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHH
T ss_pred cCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 653 367788888999999999999999998874 345678888999999999999999999999885 343 4678
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCC----chHHHHHHHHHHHhc----------CChHHHHHHHHhC-CCC-CC
Q 005305 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKP----RAMHYACMIELLGRE----------GLLDEAFALIRGA-PFK-TT 500 (703)
Q Consensus 437 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~~~~~m-~~~-p~ 500 (703)
..+...+...|++++|...|+.+.+...-.+ ....+..+...|.+. |++++|...|++. ... .+
T Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 461 (537)
T 3fp2_A 382 TFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC
Confidence 8888889999999999999998866321111 122344556677777 9999999999874 223 35
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchH
Q 005305 501 KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538 (703)
Q Consensus 501 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 538 (703)
...|..+...+...|++++|...+++++++.|++....
T Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 462 EQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 77899999999999999999999999999999876543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=1.9e-16 Score=164.87 Aligned_cols=305 Identities=11% Similarity=0.018 Sum_probs=197.0
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHH
Q 005305 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGY 307 (703)
Q Consensus 231 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 307 (703)
...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3456666677777777888887777777764 45566777777777777777777777776543 2445677777777
Q ss_pred HHcCCcHHHHHHHHHHHHCCCCC---C-HhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCH
Q 005305 308 ALHGYSEEALDLYYEMRDSGVKM---D-HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI 383 (703)
Q Consensus 308 ~~~g~~~~A~~l~~~m~~~g~~p---d-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 383 (703)
...|++++|+..|++..+. .| + ...+..+.... .......+...|...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCH
Confidence 7777777777777777664 33 2 22222221000 001122234556666667
Q ss_pred HHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 005305 384 EDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMS 460 (703)
Q Consensus 384 ~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 460 (703)
++|...|+++. ..+...|..+...|...|++++|+..|+++.+.. ..+..++..+...+...|++++|...|+...
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77766666653 2345566666666677777777777777666532 2244566666666667777777777776665
Q ss_pred hhcCCCCchHHHH------------HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHHcCChhHHHH
Q 005305 461 RDHKIKPRAMHYA------------CMIELLGREGLLDEAFALIRGA-PFKTT-K----NMWAALLTACRVNGNLELGKF 522 (703)
Q Consensus 461 ~~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~ll~a~~~~g~~~~a~~ 522 (703)
+.. +.+...+. .+...+.+.|++++|.+.+++. ...|+ . ..+..+...+...|++++|..
T Consensus 216 ~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 521 12222222 2356677888888888888763 22333 2 224456677788888888888
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 523 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
.++++++.+|+++..|..++.+|...|++++|.+.+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888887753
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=2.5e-16 Score=163.88 Aligned_cols=325 Identities=9% Similarity=-0.004 Sum_probs=233.9
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 005305 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274 (703)
Q Consensus 195 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 274 (703)
|+..|..+...+...|++++|+..|+++.+... .+..++..+...+...|++++|...+..+++.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 456788889999999999999999999987643 257788889999999999999999999999885 557789999999
Q ss_pred HHHhCCCHHHHHHHHhhcCCCCc------ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCH
Q 005305 275 MYSKCGSIEDAQGVFDEMSEKTT------VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348 (703)
Q Consensus 275 ~y~~~g~~~~A~~~f~~m~~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 348 (703)
.|.+.|++++|...|++..+.++ ..|..+...+. ...+......+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 99999999999999999865433 23333311100 00122233344455555
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005305 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQML 425 (703)
Q Consensus 349 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 425 (703)
+.|...+..+.+... .+..++..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++..
T Consensus 137 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555432 245566666666777777777777776653 2345667777777777777777777777777
Q ss_pred HcCCCcCH-HHHH------------HHHHHHHccCCHHHHHHHHHHhHhhcCCCCch--HHHHHHHHHHHhcCChHHHHH
Q 005305 426 LNGMRPNH-VTFL------------AVLSACSRSGLSERGWEIFQSMSRDHKIKPRA--MHYACMIELLGREGLLDEAFA 490 (703)
Q Consensus 426 ~~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~ 490 (703)
+. .|+. .++. .+...+.+.|++++|...++.+.+...-.+.. ..+..+...|.+.|++++|.+
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 64 3332 2221 23556788899999999998887732111111 235567788899999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 005305 491 LIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS 547 (703)
Q Consensus 491 ~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 547 (703)
.+++. ...| +..+|..+...+...|++++|...++++++++|++...+..+..++..
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 99874 2234 677899999999999999999999999999999998888887777654
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.4e-17 Score=172.45 Aligned_cols=353 Identities=14% Similarity=0.092 Sum_probs=164.9
Q ss_pred hCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHH
Q 005305 177 RCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSC 256 (703)
Q Consensus 177 ~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 256 (703)
+.|++++|.+.+++++.|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999997664 8999999999999999999999653 5778999999999999999999998888
Q ss_pred HHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHH
Q 005305 257 ALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336 (703)
Q Consensus 257 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 336 (703)
+.+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 8774 45688899999999999999999988864 67779999999999999999999999976 4789
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHH
Q 005305 337 MIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416 (703)
Q Consensus 337 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 416 (703)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 9999999999999999999887 378999999999999999999988887764 444445568899999999999
Q ss_pred HHHHHHHHHHcCCCcCH-HHHH--HHHHHHHccCCHHHHHHHHHHhHhhcCCCC------chHHHHHHHHHHHhcCChHH
Q 005305 417 AVELFEQMLLNGMRPNH-VTFL--AVLSACSRSGLSERGWEIFQSMSRDHKIKP------RAMHYACMIELLGREGLLDE 487 (703)
Q Consensus 417 A~~l~~~m~~~g~~p~~-~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~~~~ 487 (703)
|+.+++..... .+.. ..|+ .++.+-.+.+++.+..+.|..- -+++| +...|.-++-.|..-++++.
T Consensus 226 ai~lLe~aL~l--e~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 226 LITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHTTS--TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 99999988753 3332 3444 4444444556777777766532 34555 46789999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC----------cchHHHHHHHHHhCCChHHHHHH
Q 005305 488 AFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK----------LSNYVVLLNIYNSSGKLKEAAEV 557 (703)
Q Consensus 488 A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~----------~~~~~~l~~~y~~~g~~~~A~~~ 557 (703)
|...+-+-+ |+..--..+.....+-.+.|.--++..-.++..|.- .--..-.+.++.+.|.+.-+...
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~y 378 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPY 378 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHH
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHH
Confidence 988765543 121111222233334444443333332222222220 01123344555666666666666
Q ss_pred HHHHHhCC
Q 005305 558 IRTLRRKG 565 (703)
Q Consensus 558 ~~~m~~~~ 565 (703)
+..+...+
T Consensus 379 l~~v~~~n 386 (449)
T 1b89_A 379 LRSVQNHN 386 (449)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhh
Confidence 65555443
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=3.6e-16 Score=160.82 Aligned_cols=287 Identities=12% Similarity=-0.002 Sum_probs=224.0
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 005305 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMII 339 (703)
Q Consensus 263 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 339 (703)
+.+..++..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|+.+|+++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 45566677777788888888888888887653 244566777788888888888888888887753 33556677777
Q ss_pred HHHhccC-CHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHH
Q 005305 340 RICTRLA-SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGE 415 (703)
Q Consensus 340 ~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~ 415 (703)
..+...| +++.|...+..+++.. +.+..++..+...|...|++++|...|++... .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7788888 8888888888888764 23567788888889999999999999888742 34567777888899999999
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcC-------CCCchHHHHHHHHHHHhcCChHHH
Q 005305 416 EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHK-------IKPRAMHYACMIELLGREGLLDEA 488 (703)
Q Consensus 416 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~A 488 (703)
+|+..|++..+.. ..+..++..+...+...|++++|...++.+.+... .+.....+..+...|.+.|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999988742 22457788888889999999999999988876321 134467888999999999999999
Q ss_pred HHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH-HhCCChH
Q 005305 489 FALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY-NSSGKLK 552 (703)
Q Consensus 489 ~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~~ 552 (703)
.+.+++. .. +.+...|..+...+...|++++|...++++++++|+++..+..++.+| ...|+.+
T Consensus 256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999874 22 235678889999999999999999999999999999999999999988 4555543
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.75 E-value=8.4e-15 Score=161.75 Aligned_cols=421 Identities=10% Similarity=0.025 Sum_probs=270.0
Q ss_pred HHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC--C
Q 005305 117 FEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE--R 194 (703)
Q Consensus 117 ~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~ 194 (703)
|++..+.. +-|...|..++.. ...|+++.|+.+++.+++.- +.+...|..++..+.+.|++++|+++|++... |
T Consensus 2 le~al~~~--P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p 77 (530)
T 2ooe_A 2 AEKKLEEN--PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL 77 (530)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC
T ss_pred hhhHhhhC--CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Confidence 44454443 4466677777774 66788888888888887652 45566788888888888888888888887655 6
Q ss_pred CcccHHHHHHHH-HhCCChhHHHH----HHHHhHH-cCCCCC-hhhHHHHHHHHhc---------CCChHHHHHHHHHHH
Q 005305 195 NLVSCNMIIAGM-IDSGDYLEAFL----LFLDLWE-EFSDCG-SRTFATMIRASAG---------LELISVGKQLHSCAL 258 (703)
Q Consensus 195 d~~~~~~li~~~-~~~g~~~~A~~----~~~~m~~-~g~~p~-~~t~~~ll~a~~~---------~~~~~~a~~~~~~~~ 258 (703)
++..|...+... ...|+.++|.+ +|+.... .|..|+ ...|...+..... .|+++.+..++..++
T Consensus 78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 666676666432 34566666554 5555443 244443 2334444433322 355566666666655
Q ss_pred HhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHH------HCC---CC
Q 005305 259 KMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR------DSG---VK 329 (703)
Q Consensus 259 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~g---~~ 329 (703)
+........+|..........|. ..+..++. .+.+++.+|..++.++. +.. ++
T Consensus 158 ~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~ 219 (530)
T 2ooe_A 158 VNPMINIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVP 219 (530)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred hchhhhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence 52111111222222221100110 01111111 02344566666665532 111 23
Q ss_pred CCH--------hhHHHHHHHHhc----cCCH----HHHHHHHHHHHHcCCCCchHHHHHHHhhHHh-------cCCHH--
Q 005305 330 MDH--------FTFSMIIRICTR----LASL----EHAKQAHAGLVRHGFGLDIVANSALVDFYSK-------WGRIE-- 384 (703)
Q Consensus 330 pd~--------~t~~~ll~a~~~----~~~~----~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k-------~g~~~-- 384 (703)
|+. ..|...+..... .++. +.+..+++.+++.. +.+..+|..++..+.+ .|+++
T Consensus 220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a 298 (530)
T 2ooe_A 220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNA 298 (530)
T ss_dssp CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHH
T ss_pred CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhh
Confidence 331 233333322211 1222 36677888888763 3467888888888875 68877
Q ss_pred -----HHHHHhhhcCc---C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCCHHHHH
Q 005305 385 -----DARHVFDKMLC---K-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERGW 453 (703)
Q Consensus 385 -----~A~~~f~~m~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~ 453 (703)
+|..+|++... | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|...+..+.+.|++++|+
T Consensus 299 ~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~ 376 (530)
T 2ooe_A 299 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGR 376 (530)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHH
Confidence 89999998753 3 577899999999999999999999999998 45653 47888888888899999999
Q ss_pred HHHHHhHhhcCCCCchHHHHHHHHH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCC
Q 005305 454 EIFQSMSRDHKIKPRAMHYACMIEL-LGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGM 530 (703)
Q Consensus 454 ~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 530 (703)
.+|+...+. .+.+...|...+.+ +...|+.++|..+|++. ...| +...|..++......|+.++|+.++++++..
T Consensus 377 ~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 377 MIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 999998762 12223333332222 33689999999999863 3334 5788999999999999999999999999988
Q ss_pred CCCCcc----hHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 531 EPEKLS----NYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 531 ~p~~~~----~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
.|.++. .|...+......|+.+.+.++.+++.+.
T Consensus 455 ~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 455 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 776555 7778888888999999999999888753
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.74 E-value=8.3e-15 Score=160.12 Aligned_cols=364 Identities=10% Similarity=-0.012 Sum_probs=242.6
Q ss_pred cchHHHHHHHHHh----CCChHHHHHHHccCCC-CCcccHHHHHHHHHh----CCChhHHHHHHHHhHHcCCCCChhhHH
Q 005305 165 LYMRNRVLLMHVR----CGMMIDARRLFDEMPE-RNLVSCNMIIAGMID----SGDYLEAFLLFLDLWEEFSDCGSRTFA 235 (703)
Q Consensus 165 ~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~ 235 (703)
+.....|-..|.. .+++++|...|++..+ .+...+..|...|.. .+++++|++.|++..+.| +...+.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 115 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQ 115 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3344444444444 4555555555554322 244445555555555 556666666666555443 334444
Q ss_pred HHHHHHhc----CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh----CCCHHHHHHHHhhcCC-CCcccHHHHHHH
Q 005305 236 TMIRASAG----LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSK----CGSIEDAQGVFDEMSE-KTTVGWNTIIAG 306 (703)
Q Consensus 236 ~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~ 306 (703)
.+...+.. .+++++|...+..+.+.| ++..+..|..+|.. .++.++|.+.|++..+ .+..++..+...
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~ 192 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYM 192 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44444544 556666666666666654 44556666666665 6677777777766543 355566666666
Q ss_pred HHH----cCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHH
Q 005305 307 YAL----HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR----LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYS 378 (703)
Q Consensus 307 ~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 378 (703)
|.. .++.++|++.|++..+.| +...+..+...+.. .++.++|...+....+.| +...+..|..+|.
T Consensus 193 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 266 (490)
T 2xm6_A 193 YSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILE 266 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 766 677777777777777654 44455555555554 667788888887777654 4456666777777
Q ss_pred h----cCCHHHHHHHhhhcCc-CChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccC-
Q 005305 379 K----WGRIEDARHVFDKMLC-KNVISWNALIAGYGNH-----GRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG- 447 (703)
Q Consensus 379 k----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g- 447 (703)
. .++.++|...|++..+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...+...|
T Consensus 267 ~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~ 343 (490)
T 2xm6_A 267 QGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGS 343 (490)
T ss_dssp HTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC
Confidence 7 7888888888887753 4566777777777776 88999999999888764 3455566666666656
Q ss_pred --CHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCh
Q 005305 448 --LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR----EGLLDEAFALIRGAPFKTTKNMWAALLTACRV----NGNL 517 (703)
Q Consensus 448 --~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~ 517 (703)
+.++|.++|+...+ . .+...+..|..+|.. .+++++|.+.|++.....+...+..|...+.. .++.
T Consensus 344 ~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 344 EEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp HHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred cccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 78889999988877 2 456778888888887 78999999998875434467788888888887 7899
Q ss_pred hHHHHHHHHHhCCCCC---CcchHHHHHHHHHh
Q 005305 518 ELGKFAAEKLYGMEPE---KLSNYVVLLNIYNS 547 (703)
Q Consensus 518 ~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~ 547 (703)
++|...++++.+.+|+ ++.....|..++..
T Consensus 420 ~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 420 VQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 9999999999888743 56666666665543
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.2e-16 Score=165.38 Aligned_cols=221 Identities=12% Similarity=0.081 Sum_probs=83.1
Q ss_pred CCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHH
Q 005305 71 KPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREV 149 (703)
Q Consensus 71 k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a 149 (703)
++|++++| ...+++++.+ .+|+.+.. +.+.|++++|++.|.+ .+|..+|..++.++...|++++|
T Consensus 15 ~~~~ld~A---~~fae~~~~~----~vWs~La~A~l~~g~~~eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeA 80 (449)
T 1b89_A 15 HIGNLDRA---YEFAERCNEP----AVWSQLAKAQLQKGMVKEAIDSYIK-------ADDPSSYMEVVQAANTSGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHH---HHHHHhCCCh----HHHHHHHHHHHHcCCHHHHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHH
Confidence 67889999 9999999643 48999999 9999999999999964 25777999999999999999999
Q ss_pred HHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCC
Q 005305 150 KRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229 (703)
Q Consensus 150 ~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 229 (703)
...++..++. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|.+++|...|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 9988888774 56688899999999999999999988863 77789999999999999999999999876
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHH
Q 005305 230 GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYAL 309 (703)
Q Consensus 230 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 309 (703)
..|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQD 219 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHH
Confidence 36777888888888888877777765 367777888888888888888876666544 333334457777777
Q ss_pred cCCcHHHHHHHHHHHHC
Q 005305 310 HGYSEEALDLYYEMRDS 326 (703)
Q Consensus 310 ~g~~~~A~~l~~~m~~~ 326 (703)
.|++++|+.+|+.....
T Consensus 220 ~G~~eEai~lLe~aL~l 236 (449)
T 1b89_A 220 RGYFEELITMLEAALGL 236 (449)
T ss_dssp TTCHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHhCC
Confidence 77777777777776543
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=5.9e-15 Score=163.01 Aligned_cols=406 Identities=10% Similarity=0.058 Sum_probs=288.0
Q ss_pred CcccHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 005305 94 SAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLL 173 (703)
Q Consensus 94 ~~~~~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~ 173 (703)
|...|..++.+.+.|++++|..+|+++.+.. |.+...|...+..+.+.|+++.|+++++.+++.. |++..|...+.
T Consensus 12 ~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIREAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHHHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 6678988888667899999999999999863 6677789999999999999999999999999763 67777777775
Q ss_pred H-HHhCCChHHHHH----HHccCC------CCCcccHHHHHHHHHh---------CCChhHHHHHHHHhHHcCCCCCh--
Q 005305 174 M-HVRCGMMIDARR----LFDEMP------ERNLVSCNMIIAGMID---------SGDYLEAFLLFLDLWEEFSDCGS-- 231 (703)
Q Consensus 174 ~-y~~~g~~~~A~~----~f~~m~------~~d~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~-- 231 (703)
. ....|+.++|++ +|+... .++...|...+....+ .|++++|..+|++.... |+.
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~ 164 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI 164 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence 3 345677777665 666432 1356778888876655 68899999999998872 332
Q ss_pred -hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhh-------cC------CCC-
Q 005305 232 -RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE-------MS------EKT- 296 (703)
Q Consensus 232 -~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-------m~------~~~- 296 (703)
..|..........+ ..+...++. .+.++++.|..++.+ +. .|+
T Consensus 165 ~~~~~~~~~~e~~~~--------------------~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGIN--------------------IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHC--------------------HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhc--------------------hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 22222211100000 011111111 122345555554443 11 111
Q ss_pred -------cccHHHHHHHHHHc----CCc----HHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc-------cCCHH-----
Q 005305 297 -------TVGWNTIIAGYALH----GYS----EEALDLYYEMRDSGVKMDHFTFSMIIRICTR-------LASLE----- 349 (703)
Q Consensus 297 -------~~~~~~li~~~~~~----g~~----~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~-------~~~~~----- 349 (703)
...|...+.-...+ ++. ++|+.+|++..... +-+...|......+.. .|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 23455555433222 222 37788898888752 3355666666666654 68876
Q ss_pred --HHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC--cC-Ch-hhHHHHHHHHHhcCCHHHHHHHHHH
Q 005305 350 --HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML--CK-NV-ISWNALIAGYGNHGRGEEAVELFEQ 423 (703)
Q Consensus 350 --~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~-~~-~~~~~li~~~~~~g~~~~A~~l~~~ 423 (703)
.|..+++.+++.-.+.+..++..++..+.+.|++++|..+|+++. .| +. ..|..++..+.+.|+.++|.++|++
T Consensus 302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 899999999873234468899999999999999999999999884 33 33 4899999999999999999999999
Q ss_pred HHHcCCCcC-HHHHHHHHHH-HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC----CC
Q 005305 424 MLLNGMRPN-HVTFLAVLSA-CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA----PF 497 (703)
Q Consensus 424 m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 497 (703)
..+. .|+ ...+...... +...|+.++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +.
T Consensus 382 Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 382 ARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 9875 333 2333322222 346899999999999988743 346788999999999999999999999874 22
Q ss_pred CCC--HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 498 KTT--KNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 498 ~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
.|+ ...|...+.....+|+.+.+..+.+++.+..|+
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 332 458999999999999999999999999988885
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.3e-15 Score=156.61 Aligned_cols=264 Identities=13% Similarity=0.013 Sum_probs=227.6
Q ss_pred CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHH
Q 005305 295 KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV 374 (703)
Q Consensus 295 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 374 (703)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|+++.|...+..+++... .+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 466778888899999999999999999998763 33555666778888999999999999999998753 3678899999
Q ss_pred hhHHhcC-CHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHH
Q 005305 375 DFYSKWG-RIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450 (703)
Q Consensus 375 ~~y~k~g-~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 450 (703)
..|...| ++++|...|++... .+...|..+...|...|++++|+..|+++.+.... +...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998743 45678999999999999999999999999985322 3466777889999999999
Q ss_pred HHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHHcCChhH
Q 005305 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF-----------KTTKNMWAALLTACRVNGNLEL 519 (703)
Q Consensus 451 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----------~p~~~~~~~ll~a~~~~g~~~~ 519 (703)
+|...++.+.+ ..+.+...+..+...|.+.|++++|.+.+++... +.+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999987 3345678899999999999999999999876411 3345789999999999999999
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 520 GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 520 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999987764
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=6.5e-16 Score=161.76 Aligned_cols=280 Identities=11% Similarity=-0.040 Sum_probs=220.7
Q ss_pred HhCCCHHHHHH-HHhhcCC---C----CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCH
Q 005305 277 SKCGSIEDAQG-VFDEMSE---K----TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348 (703)
Q Consensus 277 ~~~g~~~~A~~-~f~~m~~---~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 348 (703)
.-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578888888 7775542 1 35568888889999999999999999998864 44667788888888999999
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc--C-ChhhHHH---------------HHHHHHh
Q 005305 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--K-NVISWNA---------------LIAGYGN 410 (703)
Q Consensus 349 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-~~~~~~~---------------li~~~~~ 410 (703)
+.|...+..+++.. +.+..++..+...|.+.|++++|...|+++.. | +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999999998875 33678888999999999999999999988743 2 2222221 1333448
Q ss_pred cCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 005305 411 HGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 411 ~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 489 (703)
.|++++|+..|+++.+..... +..++..+...+...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999853221 4688889999999999999999999999873 3445788999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC-----------cchHHHHHHHHHhCCChHHHHH
Q 005305 490 ALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-----------LSNYVVLLNIYNSSGKLKEAAE 556 (703)
Q Consensus 490 ~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~g~~~~A~~ 556 (703)
+.++++ ...| +...|..+...+...|++++|...+++++++.|++ ...|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999874 2233 57789999999999999999999999999888877 7889999999999999999999
Q ss_pred HHHH
Q 005305 557 VIRT 560 (703)
Q Consensus 557 ~~~~ 560 (703)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=1.4e-13 Score=150.45 Aligned_cols=352 Identities=14% Similarity=0.011 Sum_probs=295.3
Q ss_pred CCcccHHHHHHHHHh----CCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCc
Q 005305 194 RNLVSCNMIIAGMID----SGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAG----LELISVGKQLHSCALKMGFGDN 265 (703)
Q Consensus 194 ~d~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~ 265 (703)
.|..++..+...|.. .+++++|+..|++..+.| +...+..+...+.. .++.++|...+..+.+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 467777778888888 899999999999998764 56677777778877 899999999999999876 6
Q ss_pred HHHHHHHHHHHHh----CCCHHHHHHHHhhcCCC-CcccHHHHHHHHHH----cCCcHHHHHHHHHHHHCCCCCCHhhHH
Q 005305 266 VFVSCALIDMYSK----CGSIEDAQGVFDEMSEK-TTVGWNTIIAGYAL----HGYSEEALDLYYEMRDSGVKMDHFTFS 336 (703)
Q Consensus 266 ~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~ 336 (703)
+..+..|..+|.. .+++++|.+.|++..+. +..++..+...|.. .++.++|++.|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6777889999998 88999999999987654 56678888888887 789999999999998875 566777
Q ss_pred HHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHh----cCCHHHHHHHhhhcCc-CChhhHHHHHHH
Q 005305 337 MIIRICTR----LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK----WGRIEDARHVFDKMLC-KNVISWNALIAG 407 (703)
Q Consensus 337 ~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~-~~~~~~~~li~~ 407 (703)
.+-..+.. .++.++|...+....+.| +......|..+|.. .++.++|...|++..+ .+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777776 789999999999999875 56778888889986 8999999999998754 566778888888
Q ss_pred HHh----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHcc-----CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHH
Q 005305 408 YGN----HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS-----GLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478 (703)
Q Consensus 408 ~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 478 (703)
|.. .++.++|+..|++..+.| +...+..+...+... ++.++|...|+...+ . .+...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-Q---GDATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-c---CCHHHHHHHHHH
Confidence 887 899999999999998764 445666677777776 899999999999987 3 345677788888
Q ss_pred HHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh----
Q 005305 479 LGREG---LLDEAFALIRGAPFKTTKNMWAALLTACRV----NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS---- 547 (703)
Q Consensus 479 ~~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---- 547 (703)
|.+.| +.++|.+.|++.....++..+..|...+.. .++.++|...++++.+.. ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88767 889999999885444678889999999988 899999999999998754 47889999999999
Q ss_pred CCChHHHHHHHHHHHhCCC
Q 005305 548 SGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 548 ~g~~~~A~~~~~~m~~~~~ 566 (703)
.+++++|.+.+++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999987663
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=1e-15 Score=160.23 Aligned_cols=279 Identities=15% Similarity=0.073 Sum_probs=136.2
Q ss_pred CCChHHHHH-HHccCCC-----C--CcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHH
Q 005305 178 CGMMIDARR-LFDEMPE-----R--NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISV 249 (703)
Q Consensus 178 ~g~~~~A~~-~f~~m~~-----~--d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 249 (703)
.|++++|.. .|++... | +...|..+...+.+.|++++|+..|+++.+... .+..++..+...+...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHH
Confidence 355566655 5553322 1 234455566666666666666666666554321 133344444444444444444
Q ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCC
Q 005305 250 GKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK 329 (703)
Q Consensus 250 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 329 (703)
|...+..+++.. +. +..+|..+...|...|++++|+..|+++....
T Consensus 117 A~~~~~~al~~~-~~-------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 162 (368)
T 1fch_A 117 AISALRRCLELK-PD-------------------------------NQTALMALAVSFTNESLQRQACEILRDWLRYT-- 162 (368)
T ss_dssp HHHHHHHHHHHC-TT-------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--
T ss_pred HHHHHHHHHhcC-CC-------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 444444444433 22 33445555555555555555555555555432
Q ss_pred CCHh-hHHH---------------HHHHHhccCCHHHHHHHHHHHHHcCCCC-chHHHHHHHhhHHhcCCHHHHHHHhhh
Q 005305 330 MDHF-TFSM---------------IIRICTRLASLEHAKQAHAGLVRHGFGL-DIVANSALVDFYSKWGRIEDARHVFDK 392 (703)
Q Consensus 330 pd~~-t~~~---------------ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~ 392 (703)
|+.. .+.. .+..+...|+++.|...+..+++..... +..++..+...|.+.|++++|...|++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 242 (368)
T 1fch_A 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242 (368)
T ss_dssp TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111 1100 1222225555666666666655543221 345555666666666666666666665
Q ss_pred cC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCC--
Q 005305 393 ML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK-- 466 (703)
Q Consensus 393 m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-- 466 (703)
+. ..+..+|..+...|...|++++|+..|+++.+. .| +..++..+..++.+.|++++|...|+.+.+...-.
T Consensus 243 al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 320 (368)
T 1fch_A 243 ALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320 (368)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred HHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 52 223455666666666666666666666666553 23 34555556666666666666666666554411000
Q ss_pred -------CchHHHHHHHHHHHhcCChHHHHHHHH
Q 005305 467 -------PRAMHYACMIELLGREGLLDEAFALIR 493 (703)
Q Consensus 467 -------p~~~~~~~li~~~~~~g~~~~A~~~~~ 493 (703)
.....|..+..+|.+.|+.++|..+++
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred ccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 013455555555555566555555543
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.70 E-value=1.5e-13 Score=157.84 Aligned_cols=258 Identities=10% Similarity=0.077 Sum_probs=109.7
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC--CCcccHHHHHHHHHH
Q 005305 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE--KTTVGWNTIIAGYAL 309 (703)
Q Consensus 232 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~ 309 (703)
.+|..+..++...|++++|...|... .|...|..++..|.+.|++++|.+.|....+ ++....+.++.+|++
T Consensus 1106 ~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAK 1179 (1630)
T 1xi4_A 1106 AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 1179 (1630)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHh
Confidence 34444444444444444444444221 2333444444444444444444444433221 122222234444444
Q ss_pred cCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHH
Q 005305 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389 (703)
Q Consensus 310 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 389 (703)
.+++++ ++-|- . .|+...+..+...|...|+++.|..+|..+ ..|..+...|.+.|++++|.+.
T Consensus 1180 l~rlee-le~fI---~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A 1180 TNRLAE-LEEFI---N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred hcCHHH-HHHHH---h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHH
Confidence 444442 22111 1 223333334444444444444444444442 2344444444444555555444
Q ss_pred hhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-c
Q 005305 390 FDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP-R 468 (703)
Q Consensus 390 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~ 468 (703)
+++. .+..+|..+-.+|...|++..|...... +..+...+..++..|.+.|.+++|..+++.... +.| .
T Consensus 1244 arKA--~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~---LeraH 1313 (1630)
T 1xi4_A 1244 ARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG---LERAH 1313 (1630)
T ss_pred HHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cChhH
Confidence 4443 2334444444444444444444433322 111233333455555555555555555544432 111 2
Q ss_pred hHHHHHHHHHHHh--cCChHHHHHHHHh-CCCCC------CHHHHHHHHHHHHHcCChhHHH
Q 005305 469 AMHYACMIELLGR--EGLLDEAFALIRG-APFKT------TKNMWAALLTACRVNGNLELGK 521 (703)
Q Consensus 469 ~~~~~~li~~~~~--~g~~~~A~~~~~~-m~~~p------~~~~~~~ll~a~~~~g~~~~a~ 521 (703)
...|+-|..+|++ -+++.++.++|.+ +..+| +...|.-+...|.+.|+++.|.
T Consensus 1314 ~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1314 MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 2334344444442 2344444444433 22221 2345555555666666666555
No 26
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=3.1e-13 Score=155.11 Aligned_cols=380 Identities=12% Similarity=0.114 Sum_probs=283.2
Q ss_pred hHHHHHHHHhccCChHHHHHHHHHHHHhC--CCCCcchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhC
Q 005305 132 TYDALISACIGLRSIREVKRVFSYMLSTG--FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDS 209 (703)
Q Consensus 132 t~~~ll~~~~~~~~~~~a~~l~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~ 209 (703)
--+..++++...|.+.++.++++.++-.+ +..+....+.|+.+..+. +..+.....+....-+ ...+...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence 34566777788888888888888887332 113345666677666665 4455555444443222 44477778889
Q ss_pred CChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHH
Q 005305 210 GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVF 289 (703)
Q Consensus 210 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 289 (703)
|.+++|..+|++.. . .......++. ..+++++|.++...+ .++.+|..+..++.+.|++++|.+.|
T Consensus 1063 glyEEAf~IYkKa~----~-~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD----V-NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred CCHHHHHHHHHHcC----C-HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999998752 1 1222233332 567788888877644 45778889999999999999999999
Q ss_pred hhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHH
Q 005305 290 DEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVA 369 (703)
Q Consensus 290 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 369 (703)
.+. .|...|..++..+.+.|++++|++.|...++.. +++...+.+..+|++.++++....+ ++ .++...
T Consensus 1129 iKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~n~ad 1197 (1630)
T 1xi4_A 1129 IKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GPNNAH 1197 (1630)
T ss_pred Hhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHHH
Confidence 764 567788889999999999999999998777653 3433344588888998888754433 22 345566
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCH
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 449 (703)
+..+.+.|...|++++|...|... ..|..+...|.+.|++++|.+.+++. -+..+|..+-.+|...|++
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHH
Confidence 667999999999999999999985 48999999999999999999999876 3568899999999999999
Q ss_pred HHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHc--CChhHHHHHHH
Q 005305 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKT-TKNMWAALLTACRVN--GNLELGKFAAE 525 (703)
Q Consensus 450 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~a~~~~--g~~~~a~~~~~ 525 (703)
..|...... +..+++.+..++..|.+.|.+++|+++++. ++.+| ....|.-|..++.+. ++..++.+.+.
T Consensus 1267 ~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1267 RLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 988876543 334667788999999999999999999976 34444 344676666666544 56677777787
Q ss_pred HHhCCCC-----CCcchHHHHHHHHHhCCChHHHHHH
Q 005305 526 KLYGMEP-----EKLSNYVVLLNIYNSSGKLKEAAEV 557 (703)
Q Consensus 526 ~~~~~~p-----~~~~~~~~l~~~y~~~g~~~~A~~~ 557 (703)
.-..+.| ++...|.-++-+|.+.|.|+.|...
T Consensus 1341 ~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1341 SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 7777766 6678899999999999999999854
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=1.6e-15 Score=158.85 Aligned_cols=261 Identities=10% Similarity=-0.086 Sum_probs=212.8
Q ss_pred CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHh
Q 005305 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375 (703)
Q Consensus 296 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 375 (703)
+...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+++.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568899999999999999999999998764 4467788888999999999999999999998875 336788999999
Q ss_pred hHHhcCCHHHHHHHhhhcCcC---Chh----------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cCHHHHHHHHH
Q 005305 376 FYSKWGRIEDARHVFDKMLCK---NVI----------SWNALIAGYGNHGRGEEAVELFEQMLLNGMR-PNHVTFLAVLS 441 (703)
Q Consensus 376 ~y~k~g~~~~A~~~f~~m~~~---~~~----------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 441 (703)
.|.+.|++++|...|+++... +.. .++.+...|...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999988432 122 2334578889999999999999999985322 15788899999
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhH
Q 005305 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLEL 519 (703)
Q Consensus 442 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~ 519 (703)
.+...|++++|...|+.+.+. .+.+...|..+...|.+.|++++|.+.|++. ...| +..+|..+...+...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999873 3456789999999999999999999999874 3344 57789999999999999999
Q ss_pred HHHHHHHHhCCCCC------------CcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 520 GKFAAEKLYGMEPE------------KLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 520 a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
|...+++++++.|+ +...|..|..++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999988776 357799999999999999999887654
No 28
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=2.8e-14 Score=155.01 Aligned_cols=368 Identities=13% Similarity=-0.017 Sum_probs=180.9
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHccCC-----------C-CCcccHHHHHHHHHhCCChhHHHHHHHHhHHc-----C-
Q 005305 165 LYMRNRVLLMHVRCGMMIDARRLFDEMP-----------E-RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEE-----F- 226 (703)
Q Consensus 165 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~-----------~-~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 226 (703)
...||.|...|...|+.++|++.|++.. . ...++|+.+...|...|++++|+..|++.... +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4456666666666676666666665421 1 12345556666666666666666665554321 0
Q ss_pred CCC-ChhhHHHHHHHHhc--CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHH
Q 005305 227 SDC-GSRTFATMIRASAG--LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTI 303 (703)
Q Consensus 227 ~~p-~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 303 (703)
..+ ...++.....++.. .+++++|...|..+++.. |.++..+..+..++.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~------------------------- 184 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYR------------------------- 184 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH-------------------------
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH-------------------------
Confidence 001 11222222222221 223444444444444432 2222233222222111
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHh
Q 005305 304 IAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR----LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379 (703)
Q Consensus 304 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k 379 (703)
+...++.++|++.|++..+.. +.+...+..+...+.. .++.+.|.+.++.+.+... .+..++..+...|.+
T Consensus 185 ---l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 185 ---LDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRR 259 (472)
T ss_dssp ---HHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHH
T ss_pred ---hcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHH
Confidence 223344455555555544431 1122333333222222 2344455555555554432 234455555555555
Q ss_pred cCCHHHHHHHhhhcCc---CChhhHHHHHHHHHh-------------------cCCHHHHHHHHHHHHHcCCCcC-HHHH
Q 005305 380 WGRIEDARHVFDKMLC---KNVISWNALIAGYGN-------------------HGRGEEAVELFEQMLLNGMRPN-HVTF 436 (703)
Q Consensus 380 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~-~~t~ 436 (703)
.|++++|...|++..+ .+..+|..+...|.. .+..++|+..|++..+. .|+ ..++
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~ 337 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVC 337 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhh
Confidence 5555555555555421 223334433333321 22356788888887764 343 3667
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCch--HHHHHHHHH-HHhcCChHHHHHHHHh-CCCCCCHHHHHHHHHHHH
Q 005305 437 LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA--MHYACMIEL-LGREGLLDEAFALIRG-APFKTTKNMWAALLTACR 512 (703)
Q Consensus 437 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~-~~~~g~~~~A~~~~~~-m~~~p~~~~~~~ll~a~~ 512 (703)
..+...+...|++++|...|+...+ ....|.. ..+..+... +...|+.++|++.|++ +.+.|+...+...
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----- 411 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----- 411 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH-----
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH-----
Confidence 7788888999999999999998876 2222221 122333332 3467899999998876 3455665443322
Q ss_pred HcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEE
Q 005305 513 VNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWI 575 (703)
Q Consensus 513 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~ 575 (703)
.+.+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.+-..+...+|+
T Consensus 412 ----~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 412 ----KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ----HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 23455677788888999999999999999999999999999999988776555555664
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.66 E-value=4e-14 Score=142.94 Aligned_cols=268 Identities=9% Similarity=-0.022 Sum_probs=211.2
Q ss_pred HHhCCCHHHHHHHHhhcCCCCc----ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHH
Q 005305 276 YSKCGSIEDAQGVFDEMSEKTT----VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHA 351 (703)
Q Consensus 276 y~~~g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 351 (703)
....|++..|+..++.....++ .....+..+|...|++++|+..++. .-+|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3457888888888887665432 2345567888899999998887654 2356677788888888888899999
Q ss_pred HHHHHHHHHcCCCC-chHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005305 352 KQAHAGLVRHGFGL-DIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMR 430 (703)
Q Consensus 352 ~~~~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 430 (703)
.+.++.++..+..| +..++..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|++.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 99999888876433 567778888999999999999999998 567889999999999999999999999999986 4
Q ss_pred cCHHHH---HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 005305 431 PNHVTF---LAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWA 505 (703)
Q Consensus 431 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 505 (703)
|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+...+.+.|++++|.+.+++. ...| +..+|.
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~ 238 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI 238 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 664311 12234444568999999999999884 5667889999999999999999999999883 3345 677899
Q ss_pred HHHHHHHHcCChhH-HHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHH
Q 005305 506 ALLTACRVNGNLEL-GKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV 557 (703)
Q Consensus 506 ~ll~a~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~ 557 (703)
.++..+...|+.++ +...++++++++|+++.+ .+...+.+.++++..-
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 99999999999876 578899999999998643 4566666666666543
No 30
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=1.1e-16 Score=178.12 Aligned_cols=132 Identities=16% Similarity=0.157 Sum_probs=113.1
Q ss_pred CCCchHHHHHHHhhHHhcCCHHHHHHHhhhc-------CcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHH
Q 005305 363 FGLDIVANSALVDFYSKWGRIEDARHVFDKM-------LCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVT 435 (703)
Q Consensus 363 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m-------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 435 (703)
...-..+||+||++|+++|++++|.++|++| ..||++|||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 3445678999999999999999999999776 358999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 436 FLAVLSACSRSGL-SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 436 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
|+++|.++++.|. .++|.++|++|.+ .|+.||..+|++++....|.+-++...++..++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999887 4788999999988 699999999999998888876666665554433
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=1.3e-14 Score=148.75 Aligned_cols=259 Identities=9% Similarity=-0.108 Sum_probs=187.5
Q ss_pred ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhH
Q 005305 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFY 377 (703)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 377 (703)
..|..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|+++.|...+..+++.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345555566666666666666666665542 2244555555566666666666666666666653 22455666666677
Q ss_pred HhcCCHHHHHHHhhhcCc---CChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHH
Q 005305 378 SKWGRIEDARHVFDKMLC---KNVISWNAL--------------IA-GYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAV 439 (703)
Q Consensus 378 ~k~g~~~~A~~~f~~m~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 439 (703)
.+.|++++|.+.|+++.. .+...+..+ .. .+...|++++|+..++++.+.. ..+..++..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 777777777777766532 122233222 22 3667788999999999988753 2256788888
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 005305 440 LSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNL 517 (703)
Q Consensus 440 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~ 517 (703)
...+...|++++|...++.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 88999999999999999998773 3445778889999999999999999999874 2233 577899999999999999
Q ss_pred hHHHHHHHHHhCCCCC------------CcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 518 ELGKFAAEKLYGMEPE------------KLSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 518 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
++|...++++++..|+ ++..|..++.+|.+.|++++|.+++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999998888 6889999999999999999999988643
No 32
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.65 E-value=9.2e-15 Score=153.01 Aligned_cols=271 Identities=9% Similarity=-0.096 Sum_probs=166.0
Q ss_pred CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHH
Q 005305 94 SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172 (703)
Q Consensus 94 ~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li 172 (703)
+...|..+.. +.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+..++..+.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 5667888888 999999999999999998875 5678889999999999999999999999998875 45567788888
Q ss_pred HHHHhCCChHHHHHHHccCCC--C-Ccc----------cHHHHHHHHHhCCChhHHHHHHHHhHHcCCC-CChhhHHHHH
Q 005305 173 LMHVRCGMMIDARRLFDEMPE--R-NLV----------SCNMIIAGMIDSGDYLEAFLLFLDLWEEFSD-CGSRTFATMI 238 (703)
Q Consensus 173 ~~y~~~g~~~~A~~~f~~m~~--~-d~~----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll 238 (703)
..|.+.|++++|+..|+++.+ | +.. .++.+...+...|++++|+..|+++.+.... ++..++..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 888888888888888877653 1 111 2223355666666666666666666554322 1344555555
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHH
Q 005305 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEE 315 (703)
Q Consensus 239 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~ 315 (703)
..+...|++++|...+..+++.. +.+..+++.+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 55555556666665555555543 33455555555555555555555555554432 233445555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhh
Q 005305 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392 (703)
Q Consensus 316 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 392 (703)
|...|+++.+. .|+...-.. ......+..++..|...+...|+.+.|..+..+
T Consensus 300 A~~~~~~al~~--~~~~~~~~~----------------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSL--QRKSRNQQQ----------------------VPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHH--HHCC----------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CcccCCCcc----------------------cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 55555554432 111000000 000011356777788888888888888777665
No 33
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=4.4e-16 Score=173.32 Aligned_cols=163 Identities=15% Similarity=0.168 Sum_probs=135.7
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC-------CCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHh
Q 005305 261 GFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS-------EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHF 333 (703)
Q Consensus 261 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 333 (703)
....-..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||.+
T Consensus 122 ~~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvv 201 (1134)
T 3spa_A 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201 (1134)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHH
Confidence 344556799999999999999999999997764 5799999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc-----CChhhHHHHHHH
Q 005305 334 TFSMIIRICTRLAS-LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-----KNVISWNALIAG 407 (703)
Q Consensus 334 t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~~~~~~~~li~~ 407 (703)
||+++|.++++.|. .+.|.+++++|.+.|+.||..+|++++..+.+.+-++...+++..+.. +.+.+-+.|...
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHH
Confidence 99999999999997 578999999999999999999999999998888777777777666632 123344455666
Q ss_pred HHhcCC---------HHHHHHHHHH
Q 005305 408 YGNHGR---------GEEAVELFEQ 423 (703)
Q Consensus 408 ~~~~g~---------~~~A~~l~~~ 423 (703)
|.+.+. .++-.++|++
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHH
Confidence 666552 3555555654
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.62 E-value=5.1e-14 Score=142.21 Aligned_cols=246 Identities=9% Similarity=0.052 Sum_probs=200.0
Q ss_pred HHHHHcCCcHHHHHHHHHHHHCCCCCCH--hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCC
Q 005305 305 AGYALHGYSEEALDLYYEMRDSGVKMDH--FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR 382 (703)
Q Consensus 305 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 382 (703)
.-....|++.+|+..+++... ..|+. .....+..++...|+++.|...++. .-+|+......+...|...|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 345568999999999877543 34443 3456677899999999999875543 245677888899999999999
Q ss_pred HHHHHHHhhhcC----cC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 005305 383 IEDARHVFDKML----CK-NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457 (703)
Q Consensus 383 ~~~A~~~f~~m~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 457 (703)
.++|.+.++++. .| +...+..+...|.+.|++++|++.|++ ..+...+..+...+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999873 24 456677778899999999999999987 3566788888999999999999999999
Q ss_pred HhHhhcCCCCchHH---HHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCC
Q 005305 458 SMSRDHKIKPRAMH---YACMIELLGREGLLDEAFALIRGAP--FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532 (703)
Q Consensus 458 ~m~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 532 (703)
.+.+. .|+... ..+++..+...|++++|..+|+++. .+++...|+.+..++...|++++|+..++++++.+|
T Consensus 155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99873 355321 2234455556699999999998862 245788999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCCChHH-HHHHHHHHHhCC
Q 005305 533 EKLSNYVVLLNIYNSSGKLKE-AAEVIRTLRRKG 565 (703)
Q Consensus 533 ~~~~~~~~l~~~y~~~g~~~~-A~~~~~~m~~~~ 565 (703)
+++.++..++.++...|++++ +.++++++.+..
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999987 578988887543
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.61 E-value=8.2e-14 Score=142.83 Aligned_cols=274 Identities=11% Similarity=0.004 Sum_probs=170.9
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHH
Q 005305 195 NLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALID 274 (703)
Q Consensus 195 d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 274 (703)
+...|..+...+...|++++|+.+|+++.+.... +..++..+...+...|++++|...+..+++.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 3455666777777777777777777777654322 44555556666666666666666666666653 344555666666
Q ss_pred HHHhCCCHHHHHHHHhhcCCC---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHH--HHhccCCHH
Q 005305 275 MYSKCGSIEDAQGVFDEMSEK---TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR--ICTRLASLE 349 (703)
Q Consensus 275 ~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~--a~~~~~~~~ 349 (703)
.|...|++++|.+.|+++... +...+..+... .|+......+.. .+...|+++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 666666666666666554321 11122221000 001111111102 255566677
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 350 HAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 350 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
.|...+..+++... .+..++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+
T Consensus 156 ~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777766542 256677777777777888888887777763 23466777888888888888888888888777
Q ss_pred cCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-----------chHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 427 NGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP-----------RAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 427 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
.. ..+..++..+...+...|++++|.+.|+.+.+.. -.. +...|..+..+|.+.|+.++|.+++++.
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 42 2245677777788888888888888888776621 110 4677888888888888888888887653
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=7.8e-13 Score=143.49 Aligned_cols=381 Identities=11% Similarity=-0.025 Sum_probs=235.5
Q ss_pred CChhhHHHHHHHHhccCChHHHHHHHHHHHHh-----C--CCC-CcchHHHHHHHHHhCCChHHHHHHHccCCC------
Q 005305 128 VGSSTYDALISACIGLRSIREVKRVFSYMLST-----G--FEP-DLYMRNRVLLMHVRCGMMIDARRLFDEMPE------ 193 (703)
Q Consensus 128 p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~-----g--~~~-~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~------ 193 (703)
.....|+.+-..+...|+.++|.+.++..++. + ..| ...+|+.+...|...|++++|...|++..+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567899999999999999999999988753 1 122 345788899999999999999988876532
Q ss_pred -----CCcccHHHHHHHHHhC--CChhHHHHHHHHhHHcCCCCC-hhhHHHHHHH---HhcCCChHHHHHHHHHHHHhCC
Q 005305 194 -----RNLVSCNMIIAGMIDS--GDYLEAFLLFLDLWEEFSDCG-SRTFATMIRA---SAGLELISVGKQLHSCALKMGF 262 (703)
Q Consensus 194 -----~d~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a---~~~~~~~~~a~~~~~~~~~~g~ 262 (703)
....+++.+..++... +++++|++.|++..+. .|+ ...+..+..+ +...++.++|.+.+..+++..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~- 205 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN- 205 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence 1234565555555554 5789999999998875 344 3344444333 455678888999999988876
Q ss_pred CCcHHHHHHHHHHHHh----CCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCC-Hhh
Q 005305 263 GDNVFVSCALIDMYSK----CGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD-HFT 334 (703)
Q Consensus 263 ~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t 334 (703)
+.+..++..+...+.. .|++++|.+.|++... .+...|..+...|...|++++|+..|++..+. .|+ ..+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 283 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYL 283 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHH
Confidence 5566667666655554 4677889999887643 45667888999999999999999999998875 344 344
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhc
Q 005305 335 FSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNH 411 (703)
Q Consensus 335 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~ 411 (703)
+..+...+...+. . .... ............+..+.|...|+... ..+..+|..+...|...
T Consensus 284 ~~~lg~~y~~~~~-----~----~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 284 HCQIGCCYRAKVF-----Q----VMNL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHH-----H----HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH-----H----hhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh
Confidence 4444433321110 0 0000 00111111222334567777777663 34567899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcCHH--HHHHHHH-HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHH
Q 005305 412 GRGEEAVELFEQMLLNGMRPNHV--TFLAVLS-ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488 (703)
Q Consensus 412 g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 488 (703)
|++++|+..|++..+....|... .+..+.. ...+.|+.++|...|....+ +.|+........ +.+
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l 415 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKL 415 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHH
Confidence 99999999999998854443321 2222222 34578999999999998876 455543322222 223
Q ss_pred HHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHH
Q 005305 489 FALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541 (703)
Q Consensus 489 ~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 541 (703)
.+++++. .. +.+..+|..|...+...|++++|...+++++++.|.+|.++.-+
T Consensus 416 ~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 416 QKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 3333321 12 23567899999999999999999999999999999887765544
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=7e-13 Score=130.69 Aligned_cols=216 Identities=10% Similarity=-0.003 Sum_probs=153.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc--C-C-------hhhHHHHH
Q 005305 336 SMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC--K-N-------VISWNALI 405 (703)
Q Consensus 336 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-~-------~~~~~~li 405 (703)
..+...+...|+++.|...+..+++.. .+..++..+...|...|++++|...|++... | + ...|..+.
T Consensus 9 ~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 9 KAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 333344444444445544444444443 3445555555556666666666666555422 1 1 45677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCCh
Q 005305 406 AGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLL 485 (703)
Q Consensus 406 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 485 (703)
..|...|++++|+..|++..+. .|+. ..+...|++++|...++.+.+ ..+.+...+..+...+.+.|++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCH
Confidence 7888888888888888888774 4453 235556778888888888766 2233456777888888888999
Q ss_pred HHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 486 DEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 486 ~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
++|.+.+++. .. +.+...|..+...+...|++++|...++++++..|+++..|..++.+|.+.|++++|.+.+++..+
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9998888774 22 335778888889999999999999999999999999999999999999999999999999988775
Q ss_pred C
Q 005305 564 K 564 (703)
Q Consensus 564 ~ 564 (703)
.
T Consensus 236 ~ 236 (258)
T 3uq3_A 236 K 236 (258)
T ss_dssp H
T ss_pred h
Confidence 3
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=8e-13 Score=130.28 Aligned_cols=233 Identities=12% Similarity=-0.013 Sum_probs=149.4
Q ss_pred cHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCC--Cc----hHHHHH
Q 005305 299 GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFG--LD----IVANSA 372 (703)
Q Consensus 299 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~----~~~~~~ 372 (703)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|+++.|...+..+++.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34445555555555555555555555544 44555555555555556666666555555543211 11 456666
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHH
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSER 451 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 451 (703)
+...|.+.|++++|...|++....+.. ...+...|++++|+..++++... .|+. ..+..+...+...|++++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHH
Confidence 777777777777777777766431111 23455567777888888777763 4443 566667777778888888
Q ss_pred HHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhC
Q 005305 452 GWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYG 529 (703)
Q Consensus 452 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 529 (703)
|...|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+.++|...++++++
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888877762 2345667777888888888888888887763 2233 466778888888888888888888888887
Q ss_pred CC------CCCcchHHHHH
Q 005305 530 ME------PEKLSNYVVLL 542 (703)
Q Consensus 530 ~~------p~~~~~~~~l~ 542 (703)
+. |++...+..+.
T Consensus 236 ~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHH
T ss_pred hChhhcCCCchHHHHHHHH
Confidence 77 76655555444
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=2e-12 Score=128.86 Aligned_cols=241 Identities=10% Similarity=-0.056 Sum_probs=185.1
Q ss_pred HcCCcHHHHHHHHHHHHCCCC---CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHH
Q 005305 309 LHGYSEEALDLYYEMRDSGVK---MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIED 385 (703)
Q Consensus 309 ~~g~~~~A~~l~~~m~~~g~~---pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 385 (703)
..|++++|+..|+++.+.... .+..++..+...+...|+++.|...+..+++... .+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 356788888888888775321 1345667777778888888888888888887643 367788889999999999999
Q ss_pred HHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhh
Q 005305 386 ARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRD 462 (703)
Q Consensus 386 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 462 (703)
|...|++... .+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999988743 46778999999999999999999999999884 566555555556667779999999999887763
Q ss_pred cCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc
Q 005305 463 HKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTT-----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536 (703)
Q Consensus 463 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 536 (703)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++.+|++..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 33444444 4777788888889999999874 33332 468889999999999999999999999999998654
Q ss_pred hHHHHHHHHHhCCChHHHHHHH
Q 005305 537 NYVVLLNIYNSSGKLKEAAEVI 558 (703)
Q Consensus 537 ~~~~l~~~y~~~g~~~~A~~~~ 558 (703)
. ...++...|++++|.+-+
T Consensus 251 ~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 E---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHhhHHHH
Confidence 4 466788889999988765
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.49 E-value=1.1e-12 Score=126.30 Aligned_cols=194 Identities=18% Similarity=0.081 Sum_probs=150.5
Q ss_pred CCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHH
Q 005305 364 GLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAV 439 (703)
Q Consensus 364 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~l 439 (703)
+++...+..+...|.+.|++++|...|++... .+...|..+...+.+.|++++|+..|++..+. .|+ ...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 34566777888888888999999988888743 35678888888899999999999999998874 454 4677778
Q ss_pred HHHHHcc-----------CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHH
Q 005305 440 LSACSRS-----------GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTTKNMWAAL 507 (703)
Q Consensus 440 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 507 (703)
..++... |++++|...|+...+. -+.+...+..+..+|...|++++|++.|++. ....+...|..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 9999999999998872 2335678888999999999999999999873 112678899999
Q ss_pred HHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005305 508 LTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTL 561 (703)
Q Consensus 508 l~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 561 (703)
..++...|++++|...++++++++|+++..+..++.+|.+.|++++|.+.+++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988764
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=1e-11 Score=133.71 Aligned_cols=372 Identities=9% Similarity=0.007 Sum_probs=179.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCCh---HHHHHHHccCCCCCcccHHHHHHHHHhCC--
Q 005305 136 LISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMM---IDARRLFDEMPERNLVSCNMIIAGMIDSG-- 210 (703)
Q Consensus 136 ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~m~~~d~~~~~~li~~~~~~g-- 210 (703)
+...+.+.|++++|.+++....+.| ++..+..|-.+|...|+. ++|...|++..+.+...+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3444556677777777777777765 233344455556666666 77888887776666667777766555554
Q ss_pred ---ChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCCh---HHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCC----
Q 005305 211 ---DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI---SVGKQLHSCALKMGFGDNVFVSCALIDMYSKCG---- 280 (703)
Q Consensus 211 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g---- 280 (703)
++++|+..|++..+.|... .+..+...+...+.. ..+.+.+......| ++.....|..+|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 6678888888877755332 444444444443332 23444444444444 3445566677777666
Q ss_pred CHHHHHHHHhhcCCCCcccHHHHHHHHHHcC---CcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhcc----CCHHHHHH
Q 005305 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHG---YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRL----ASLEHAKQ 353 (703)
Q Consensus 281 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~----~~~~~a~~ 353 (703)
..+.+..++......++.++..+...|...| +.++|++.|++..+.| .++...+..+-..+... ++.++|..
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 4455566666666666667777777777777 7777777777777765 23333323333333332 34555555
Q ss_pred HHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCc
Q 005305 354 AHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGY--GNHGRGEEAVELFEQMLLNGMRP 431 (703)
Q Consensus 354 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p 431 (703)
.+..+. . .++..+..|..+| | ...+++++|+..|++..+.|
T Consensus 239 ~~~~aa-~---g~~~a~~~Lg~~~------------------------------~~~~~~~d~~~A~~~~~~Aa~~g--- 281 (452)
T 3e4b_A 239 LLEKIA-P---GYPASWVSLAQLL------------------------------YDFPELGDVEQMMKYLDNGRAAD--- 281 (452)
T ss_dssp HHHHHG-G---GSTHHHHHHHHHH------------------------------HHSGGGCCHHHHHHHHHHHHHTT---
T ss_pred HHHHHc-C---CCHHHHHHHHHHH------------------------------HhCCCCCCHHHHHHHHHHHHHCC---
Confidence 555444 2 1333333343331 2 23445555555555555443
Q ss_pred CHHHHHHHHHHHHccC-----CHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHH
Q 005305 432 NHVTFLAVLSACSRSG-----LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR----EGLLDEAFALIRGAPFKTTKN 502 (703)
Q Consensus 432 ~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~ 502 (703)
+...+..+...|. .| +.++|..+|+... .-+...+..|..+|.. ..+.++|.+.|++.....+..
T Consensus 282 ~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~ 355 (452)
T 3e4b_A 282 QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS 355 (452)
T ss_dssp CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT
T ss_pred CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH
Confidence 3333333333333 22 5555555555443 2334444445544443 225566666665532222333
Q ss_pred HHHHHHHHHHH----cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHH--hCCChHHHHHHHHHHH
Q 005305 503 MWAALLTACRV----NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN--SSGKLKEAAEVIRTLR 562 (703)
Q Consensus 503 ~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~--~~g~~~~A~~~~~~m~ 562 (703)
....|...|.. ..+.++|...++++.+..+.+ .-..+..+.. ..++.++|.++.++-+
T Consensus 356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 33334444332 345666666666666555432 2223333322 2234556666655543
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=5.8e-12 Score=125.46 Aligned_cols=253 Identities=12% Similarity=0.029 Sum_probs=142.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCC--HhhHHHHHHHH
Q 005305 268 VSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD--HFTFSMIIRIC 342 (703)
Q Consensus 268 ~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~ 342 (703)
........|.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+....|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344566677777888888887777643 2445677777777778888888888777776321111 12255666666
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHH
Q 005305 343 TRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVE 419 (703)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 419 (703)
...|+++.|...+..+++... .+..++..+...|.+.|++++|...|++... .+...|..+...+-..+++++|+.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777777776666532 2445666666666666666666666666542 233444444412222346666666
Q ss_pred HHHHHHHcCCCcC-HHHHHHHHHHHHccCC---HHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 420 LFEQMLLNGMRPN-HVTFLAVLSACSRSGL---SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 420 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
.|+++.+. .|+ ...+..+..++...|+ .++|...++.+.+...-.|+.. -
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~----------------------- 217 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K----------------------- 217 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H-----------------------
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h-----------------------
Confidence 66665553 333 2333334444444443 3344444443333111111100 0
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC
Q 005305 496 PFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549 (703)
Q Consensus 496 ~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 549 (703)
.....+|..+...+...|++++|...++++++++|+++.++..+..+....+
T Consensus 218 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 218 --DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred --HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 0012356667777888888888888888888888988877766665554443
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.42 E-value=4.5e-12 Score=121.94 Aligned_cols=193 Identities=12% Similarity=-0.058 Sum_probs=134.4
Q ss_pred CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHH
Q 005305 94 SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172 (703)
Q Consensus 94 ~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li 172 (703)
+...|..+.. +.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 6667777777 999999999999999998765 5677888888889999999999999999998875 44567788888
Q ss_pred HHHHhC-----------CChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHH
Q 005305 173 LMHVRC-----------GMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMI 238 (703)
Q Consensus 173 ~~y~~~-----------g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 238 (703)
..|.+. |++++|+..|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 888887 777777777766543 345566667777777777777777777776655 4666666666
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 005305 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292 (703)
Q Consensus 239 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m 292 (703)
.++...|++++|...++.+++.. +.+..++..+...|.+.|++++|.+.|++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 77777777777777777776654 445666666667777777777776666654
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=2.5e-11 Score=119.36 Aligned_cols=197 Identities=12% Similarity=-0.006 Sum_probs=161.1
Q ss_pred hHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 005305 367 IVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSAC 443 (703)
Q Consensus 367 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 443 (703)
..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. ..+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4667777888888888888888888774 3456778888888899999999999999888753 22557777888888
Q ss_pred HccCCHHHHHHHHHHhHhhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 005305 444 SRSGLSERGWEIFQSMSRDHKIKP-RAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELG 520 (703)
Q Consensus 444 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a 520 (703)
...|++++|..+++.+.+ .+..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999988876 33444 4667788888899999999999988874 2233 577888888999999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
...++++++..|++...+..++.+|...|++++|.+.++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999988899999999999999999999999987644
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.40 E-value=3.4e-11 Score=115.72 Aligned_cols=197 Identities=14% Similarity=0.050 Sum_probs=143.0
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 442 (703)
+..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+.. ..+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45566667777777777777777777663 2345677777777778888888888888777642 2245667777777
Q ss_pred HHcc-CCHHHHHHHHHHhHhhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChh
Q 005305 443 CSRS-GLSERGWEIFQSMSRDHKIKP-RAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLE 518 (703)
Q Consensus 443 ~~~~-g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~ 518 (703)
+... |++++|..+++.+.+ .+..| +...+..+...+.+.|++++|.+.++++ ...| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7788 888888888877766 33333 3566777777788888888888877763 2223 4667777888888888888
Q ss_pred HHHHHHHHHhCCCC-CCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 519 LGKFAAEKLYGMEP-EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 519 ~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+|...++++++..| +++..+..+..++...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888888888 77777888888888888888888888877643
No 46
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.39 E-value=1.6e-09 Score=120.76 Aligned_cols=422 Identities=9% Similarity=0.022 Sum_probs=246.8
Q ss_pred CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCC---hHHHHHHHHHHHHhC-CCCCcchH
Q 005305 94 SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRS---IREVKRVFSYMLSTG-FEPDLYMR 168 (703)
Q Consensus 94 ~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~---~~~a~~l~~~~~~~g-~~~~~~~~ 168 (703)
|...|..++. +.+.+..+.+..+|+.+... ++.....|..-+..-.+.++ .+.+.++|+..+... .+|++..|
T Consensus 65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 5566777777 66667777777777777765 35555666666666666666 777777777776643 13566666
Q ss_pred HHHHHHHHhCCCh--------HHHHHHHccCC------CC-CcccHHHHHHHHHh---------CCChhHHHHHHHHhHH
Q 005305 169 NRVLLMHVRCGMM--------IDARRLFDEMP------ER-NLVSCNMIIAGMID---------SGDYLEAFLLFLDLWE 224 (703)
Q Consensus 169 ~~Li~~y~~~g~~--------~~A~~~f~~m~------~~-d~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 224 (703)
..-+....+.++. +..+++|+... ++ +...|...+.-... +++.+.+..+|++.+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 6666555444433 22335555311 12 23456665554322 2334556666666553
Q ss_pred cCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhh-------cCC---
Q 005305 225 EFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDE-------MSE--- 294 (703)
Q Consensus 225 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-------m~~--- 294 (703)
.....-..+|.....-....+ ...+.+++.+. ..+++.|...+.+ +..
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~---------------------~~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL---------------------SAQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH---------------------HHHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh---------------------hHHHHHHHHHHHHHHHHHHhHhhccc
Confidence 211101112211111000000 00111111110 0122233333322 110
Q ss_pred -----------C--C------cccHHHHHHHHHHcCC-------cHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCH
Q 005305 295 -----------K--T------TVGWNTIIAGYALHGY-------SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL 348 (703)
Q Consensus 295 -----------~--~------~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 348 (703)
| + ...|...+.---.++. .+.+..+|++.... .+-+...|.....-+...|+.
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~ 359 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTD 359 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCC
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcH
Confidence 0 0 1234444443222221 23345677777664 234566666666667777888
Q ss_pred HHHH-HHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc-------------CC------------hhhHH
Q 005305 349 EHAK-QAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-------------KN------------VISWN 402 (703)
Q Consensus 349 ~~a~-~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------------~~------------~~~~~ 402 (703)
+.|. .+++.++.. .+.+...+-.++..+-+.|+++.|.++|+.+.. |+ ...|-
T Consensus 360 ~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 360 STVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp TTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 8886 999988875 345677788888888899999999999988743 21 23577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHcc-CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHH
Q 005305 403 ALIAGYGNHGRGEEAVELFEQMLLN-GMRPNHVTFLAVLSACSRS-GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480 (703)
Q Consensus 403 ~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 480 (703)
..+....+.|..+.|..+|.+.++. +. +....|......-.+. ++.+.|+.+|+...+. .+.+...+...++...
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~ 515 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 7787777888899999999998875 21 1223333222222233 4589999999988874 3445666778888888
Q ss_pred hcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 481 REGLLDEAFALIRGA-PFKT----TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 481 ~~g~~~~A~~~~~~m-~~~p----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
..|+.+.|..+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|++. ....+++=|
T Consensus 516 ~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred hCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 889999999999874 2233 245888888888899999999999999998888864 344444444
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.39 E-value=1.4e-10 Score=115.59 Aligned_cols=224 Identities=11% Similarity=-0.070 Sum_probs=128.3
Q ss_pred CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHH
Q 005305 296 TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTR----LASLEHAKQAHAGLVRHGFGLDIVANS 371 (703)
Q Consensus 296 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 371 (703)
+..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 34445555555666666666666666655521 22333334444444 444555554444444432
Q ss_pred HHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc--
Q 005305 372 ALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGN----HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR-- 445 (703)
Q Consensus 372 ~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-- 445 (703)
+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+..
T Consensus 73 -------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 73 -------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp -------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred -------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCC
Confidence 34444445555555 555555665555555543 44455555555555
Q ss_pred --cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cC
Q 005305 446 --SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR----EGLLDEAFALIRGAPFKTTKNMWAALLTACRV----NG 515 (703)
Q Consensus 446 --~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g 515 (703)
.++.++|..+|+...+ .+ +...+..+...|.+ .+++++|.+.+++.....+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 5666666666665554 22 34445555555555 66666666666553222345556666666666 67
Q ss_pred ChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHhCC
Q 005305 516 NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS----SGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 516 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~ 565 (703)
+.++|...++++.+..| +..+..|+.+|.. .|++++|.+.+++..+.|
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777777777776655 4667777777777 778888888877776654
No 48
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.38 E-value=2.8e-11 Score=120.55 Aligned_cols=214 Identities=14% Similarity=-0.003 Sum_probs=142.4
Q ss_pred hCCChhHHHHHHHHhHHcCCCC---ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHH
Q 005305 208 DSGDYLEAFLLFLDLWEEFSDC---GSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIED 284 (703)
Q Consensus 208 ~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 284 (703)
..|++++|+..|+++.+..... +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 3466778888888777653211 24456667777777788888888887777765 4567778888888888888888
Q ss_pred HHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 005305 285 AQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH 361 (703)
Q Consensus 285 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 361 (703)
|.+.|++..+ .+...|..+...|.+.|++++|+..|+++.+. .|+.......+..+...|+++.|...+..+...
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888877653 35667888888888888888888888888774 344444444444556667777777777666664
Q ss_pred CCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCC-------hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 362 GFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKN-------VISWNALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 362 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
.. ++...+ .++..+...++.++|...++.....+ ...|..+...|...|++++|+..|++..+
T Consensus 174 ~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 174 SD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp SC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 32 222222 35555666666667776666654322 34556666666666666666666666655
No 49
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.38 E-value=4.6e-11 Score=128.55 Aligned_cols=267 Identities=9% Similarity=-0.008 Sum_probs=174.1
Q ss_pred CHHHHHHHHhhcCCC-CcccHHHHHHHHHHcCCcH---HHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCH----HHHH
Q 005305 281 SIEDAQGVFDEMSEK-TTVGWNTIIAGYALHGYSE---EALDLYYEMRDSGVKMDHFTFSMIIRICTRLASL----EHAK 352 (703)
Q Consensus 281 ~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~----~~a~ 352 (703)
+.++|.+.|++..++ +...+..|...|...+..+ ++++.+.+....|. ......+...+...+.+ +.+.
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHH
Confidence 445555555544332 3335555555555444322 23444444443332 22333344444444433 3333
Q ss_pred HHHHHHHHcCCCCchHHHHHHHhhHHhcC---CHHHHHHHhhhcCc---CChhhHHHHHHHHHhc----CCHHHHHHHHH
Q 005305 353 QAHAGLVRHGFGLDIVANSALVDFYSKWG---RIEDARHVFDKMLC---KNVISWNALIAGYGNH----GRGEEAVELFE 422 (703)
Q Consensus 353 ~~~~~~~~~g~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~----g~~~~A~~l~~ 422 (703)
.++..+.+ .++..+..|..+|.+.| +.++|.+.|+.... ++...+..+...|... +++++|+..|+
T Consensus 166 ~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 166 RICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 33333322 23337777778888888 78888888877643 2333335566666444 68999999999
Q ss_pred HHHHcCCCcCHHHHHHHHHH-H--HccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcC-----ChHHHHHHHHh
Q 005305 423 QMLLNGMRPNHVTFLAVLSA-C--SRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG-----LLDEAFALIRG 494 (703)
Q Consensus 423 ~m~~~g~~p~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~ 494 (703)
+.. .| +...+..+... + ...++.++|..+|+...+ .| +...+..|..+|. .| ++++|.+.|++
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 986 33 33444455544 3 468999999999999887 34 5667778888887 55 99999999999
Q ss_pred CCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHhCCC
Q 005305 495 APFKTTKNMWAALLTACRV----NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS----SGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 495 m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~~~ 566 (703)
.. ..++..+..|...|.. ..+.++|...+++..+. .++.....|+.+|.. ..+.++|..+++...+.|.
T Consensus 313 Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 313 AV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred Hh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 87 6677788887777765 34999999999999874 456788999999985 4589999999999887764
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.38 E-value=3.8e-11 Score=125.40 Aligned_cols=244 Identities=11% Similarity=0.033 Sum_probs=186.1
Q ss_pred ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCC-HHHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 005305 298 VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS-LEHAKQAHAGLVRHGFGLDIVANSALVDF 376 (703)
Q Consensus 298 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 376 (703)
..|+.+...+.+.|++++|+..|++..+.. +-+...|..+..++...|+ +++|...++.+++.... +..+|+.+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 356677777777888888888888877652 2245566667777777775 88888888888876533 67788888888
Q ss_pred HHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHc-cCCHHH
Q 005305 377 YSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSR-SGLSER 451 (703)
Q Consensus 377 y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~-~g~~~~ 451 (703)
|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|+++++. .| +...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence 888888888988888874 346778888888999999999999999999885 44 45778888888888 565566
Q ss_pred H-----HHHHHHhHhhcCCCCchHHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC--------
Q 005305 452 G-----WEIFQSMSRDHKIKPRAMHYACMIELLGREG--LLDEAFALIRGAPFKT-TKNMWAALLTACRVNG-------- 515 (703)
Q Consensus 452 a-----~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~a~~~~g-------- 515 (703)
| ...|+...+. -+-+...|..+..+|.+.| ++++|++.+.++...| +...+..+...+...|
T Consensus 254 A~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 6 4778777762 2335678888888888888 6889998888774444 4567888888887764
Q ss_pred -ChhHHHHHHHHH-hCCCCCCcchHHHHHHHHHh
Q 005305 516 -NLELGKFAAEKL-YGMEPEKLSNYVVLLNIYNS 547 (703)
Q Consensus 516 -~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~~ 547 (703)
..++|..+++++ .+++|.....|..++..+..
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 258899999999 89999988888887776654
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.38 E-value=6.8e-11 Score=116.15 Aligned_cols=207 Identities=13% Similarity=-0.001 Sum_probs=127.3
Q ss_pred cccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 005305 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376 (703)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 376 (703)
...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+..+.+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------------
Confidence 4567777777777888888888887776642 2233444444444455555555555555444432
Q ss_pred HHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHH
Q 005305 377 YSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEI 455 (703)
Q Consensus 377 y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 455 (703)
..+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+...+...|++++|..+
T Consensus 102 ------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 102 ------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 12344555555666666666666666666655323443 34555566666667777777777
Q ss_pred HHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 456 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
|+.+.+. .+.+...+..+...|.+.|++++|.+.+++. .. +.+...+..+...+...|+.++|...++++.+..|+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 7666552 2234566667777777777777777777663 22 234556677777777788888888888888877887
Q ss_pred CcchH
Q 005305 534 KLSNY 538 (703)
Q Consensus 534 ~~~~~ 538 (703)
++...
T Consensus 242 ~~~~~ 246 (252)
T 2ho1_A 242 SLEYQ 246 (252)
T ss_dssp SHHHH
T ss_pred CHHHH
Confidence 65443
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.38 E-value=1.3e-11 Score=120.45 Aligned_cols=197 Identities=11% Similarity=0.089 Sum_probs=137.6
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 442 (703)
....+..+...|...|++++|...|+++.. .+...|..+...|...|++++|+..|+++.+.. ..+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445666677777888888888888887742 356677778888888888888888888887752 2245677777788
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHH
Q 005305 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLELG 520 (703)
Q Consensus 443 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a 520 (703)
+...|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++ .. +.+...|..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888888763 2345667778888888888888888888764 22 23567788888888888888888
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
...++++++..|+++..+..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 888888888888888888888888888899999988888887543
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.37 E-value=9.7e-11 Score=112.48 Aligned_cols=199 Identities=12% Similarity=-0.001 Sum_probs=124.4
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhc-CCH
Q 005305 339 IRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNH-GRG 414 (703)
Q Consensus 339 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~-g~~ 414 (703)
...+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|++.. ..+...|..+...|... |++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 93 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRP 93 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcH
Confidence 333334444444444444443332 1133445555555556666666666665542 23455666667777777 777
Q ss_pred HHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHH
Q 005305 415 EEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIR 493 (703)
Q Consensus 415 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 493 (703)
++|+..|+++.+.+..|+ ...+..+..++...|++++|...|+.+.+. .+.+...+..+...|.+.|++++|.+.++
T Consensus 94 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (225)
T 2vq2_A 94 AESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFK 171 (225)
T ss_dssp HHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777776333344 356666677777777788887777777662 23346677777778888888888888777
Q ss_pred hC-CC-C-CCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHH
Q 005305 494 GA-PF-K-TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540 (703)
Q Consensus 494 ~m-~~-~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 540 (703)
+. .. + .+...|..+...+...|+.+.+...++.+.+..|+++.....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 172 KYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 63 22 2 355666666777788888888888888888788887655443
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.37 E-value=1.5e-10 Score=115.40 Aligned_cols=189 Identities=10% Similarity=-0.005 Sum_probs=131.7
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-CcccHHHHHHHHHH----cCCcHHHHHHHHHHHHCCCCCCHhhHHHH
Q 005305 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYAL----HGYSEEALDLYYEMRDSGVKMDHFTFSMI 338 (703)
Q Consensus 264 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 338 (703)
.++..+..+...|...|++++|.+.|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 46778888999999999999999999987664 56678889999999 999999999999998876 66677777
Q ss_pred HHHHhc----cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHh----cCCHHHHHHHhhhcCc-CChhhHHHHHHHHH
Q 005305 339 IRICTR----LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK----WGRIEDARHVFDKMLC-KNVISWNALIAGYG 409 (703)
Q Consensus 339 l~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~ 409 (703)
...+.. .+++++|...+..+.+.+ +...+..+..+|.+ .|+.++|...|++..+ .+..++..+...|.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 777777 888888888888887764 55666666666666 6666666666665532 23444555555555
Q ss_pred h----cCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc----cCCHHHHHHHHHHhHh
Q 005305 410 N----HGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR----SGLSERGWEIFQSMSR 461 (703)
Q Consensus 410 ~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~ 461 (703)
. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|+...+
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 5 555666666665555532 23344444445555 5555555555555544
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.36 E-value=1.7e-11 Score=119.57 Aligned_cols=212 Identities=15% Similarity=0.111 Sum_probs=125.6
Q ss_pred cccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhh
Q 005305 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDF 376 (703)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 376 (703)
...|..+...+.+.|++++|+..|+++.+.. +.+. .++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~-----------------------------------~~~~~la~~ 66 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDA-----------------------------------IPYINFANL 66 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCH-----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccH-----------------------------------HHHHHHHHH
Confidence 3455556666666666666666666665532 2233 344444445
Q ss_pred HHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHH
Q 005305 377 YSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGW 453 (703)
Q Consensus 377 y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 453 (703)
|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. ..+...+..+...+...|++++|.
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~ 145 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL 145 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 555555555555555442 2244556666666777777777777777776642 224456666667777777777777
Q ss_pred HHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCC
Q 005305 454 EIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGME 531 (703)
Q Consensus 454 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~ 531 (703)
.+++.+.+. .+.+...+..+...|.+.|++++|.+.+++. .. +.+..+|..+...+...|+.++|...+++++++.
T Consensus 146 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 146 PYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777652 2345667777778888888888888887763 22 2356688888888899999999999999999999
Q ss_pred CCCcchHHHHHHHHHh
Q 005305 532 PEKLSNYVVLLNIYNS 547 (703)
Q Consensus 532 p~~~~~~~~l~~~y~~ 547 (703)
|+++..+..+..+...
T Consensus 224 p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 224 PDHMLALHAKKLLGHH 239 (243)
T ss_dssp TTCHHHHHHHTC----
T ss_pred cchHHHHHHHHHHHhh
Confidence 9888777666555443
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=1.2e-11 Score=131.30 Aligned_cols=265 Identities=12% Similarity=0.006 Sum_probs=149.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhhcCC--C-Cc----ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 005305 268 VSCALIDMYSKCGSIEDAQGVFDEMSE--K-TT----VGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIR 340 (703)
Q Consensus 268 ~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 340 (703)
.+..+...|...|++++|...|++..+ + +. ..|..+...|...|++++|+..|++..+...
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------ 117 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK------------ 117 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------------
Confidence 334455566666666666666665542 1 21 2455556666666666666666665543100
Q ss_pred HHhccCCHHHHHHHHHHHHHcCC-CCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---------CChhhHHHHHHHHHh
Q 005305 341 ICTRLASLEHAKQAHAGLVRHGF-GLDIVANSALVDFYSKWGRIEDARHVFDKMLC---------KNVISWNALIAGYGN 410 (703)
Q Consensus 341 a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---------~~~~~~~~li~~~~~ 410 (703)
+.+. .....++..+...|...|++++|...|++... ....+|..+...|..
T Consensus 118 -------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 118 -------------------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp -------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 0000 01223344444445555555555555444311 112345555555555
Q ss_pred cCC-----------------HHHHHHHHHHHHHc----CCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc
Q 005305 411 HGR-----------------GEEAVELFEQMLLN----GMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR 468 (703)
Q Consensus 411 ~g~-----------------~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 468 (703)
.|+ +++|+..+++..+. +-.|.. .++..+...+...|++++|..+++...+...-.++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 555 56666555554331 111221 35555566666677777777666665442111111
Q ss_pred ----hHHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC---
Q 005305 469 ----AMHYACMIELLGREGLLDEAFALIRGAP-F---KTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPE--- 533 (703)
Q Consensus 469 ----~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--- 533 (703)
...+..+...|...|++++|.+.+++.. . ..+ ..++..+...+...|++++|...+++++++.++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 2256666677777777777777765431 0 111 346667777778888888888888777655432
Q ss_pred ---CcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 534 ---KLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 534 ---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
....|..++.+|.+.|++++|.+.+++..+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 234788899999999999999999988764
No 57
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.33 E-value=1.7e-10 Score=114.72 Aligned_cols=227 Identities=10% Similarity=-0.048 Sum_probs=181.6
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC--CCcc----cHHHHH
Q 005305 231 SRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE--KTTV----GWNTII 304 (703)
Q Consensus 231 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~----~~~~li 304 (703)
...+......+...|++++|...+..+++.. +.+..++..+...|...|++++|.+.|++..+ ++.. +|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 4456667788889999999999999999875 45666888999999999999999999998765 2333 388899
Q ss_pred HHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHH-hhHHhcCCH
Q 005305 305 AGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALV-DFYSKWGRI 383 (703)
Q Consensus 305 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li-~~y~k~g~~ 383 (703)
..|...|++++|+..|++..+.. +.+...+..+...+...|+++.|...+..+++.. +.+..++..+. ..|.+ +++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN-KEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999998863 3355788889999999999999999999998863 34667777787 55554 599
Q ss_pred HHHHHHhhhcCc---CChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCcCH------HHHHHHHHHHHccCCHH
Q 005305 384 EDARHVFDKMLC---KNVISWNALIAGYGNHGR---GEEAVELFEQMLLNG-MRPNH------VTFLAVLSACSRSGLSE 450 (703)
Q Consensus 384 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~~------~t~~~ll~a~~~~g~~~ 450 (703)
++|.+.|++..+ .+...|..+...+...|+ +++|+..|++..+.. -.|+. .++..+...+...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999999998843 346678888888888888 888999999988742 12431 45666777778888888
Q ss_pred HHHHHHHHhHh
Q 005305 451 RGWEIFQSMSR 461 (703)
Q Consensus 451 ~a~~~~~~m~~ 461 (703)
+|.+.|+.+.+
T Consensus 239 ~A~~~~~~al~ 249 (272)
T 3u4t_A 239 KADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888876
No 58
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.33 E-value=5e-11 Score=124.53 Aligned_cols=225 Identities=11% Similarity=0.054 Sum_probs=190.1
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCC-HHHHHHHhhhcC---cCChhhHHHHHHHH
Q 005305 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGR-IEDARHVFDKML---CKNVISWNALIAGY 408 (703)
Q Consensus 333 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~-~~~A~~~f~~m~---~~~~~~~~~li~~~ 408 (703)
..|..+..++...|++++|...+..+++... .+..+++.+...|.+.|+ +++|...|++.. ..+...|+.+...|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 3456666777888999999999999999753 367889999999999997 999999999985 34678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHh-cCChH
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGR-EGLLD 486 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~ 486 (703)
...|++++|+..|+++++. .| +...|..+..++.+.|++++|...|+.+.+. -+.+...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999985 45 5588999999999999999999999999873 33467889999999999 67768
Q ss_pred HH-----HHHHHh-CCCCC-CHHHHHHHHHHHHHcC--ChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC--------
Q 005305 487 EA-----FALIRG-APFKT-TKNMWAALLTACRVNG--NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG-------- 549 (703)
Q Consensus 487 ~A-----~~~~~~-m~~~p-~~~~~~~ll~a~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-------- 549 (703)
+| ++.|++ +...| +...|..+...+...| +.++|...++++ +.+|+++..+..|+++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 87 466665 33445 5678999998888888 689999999998 999999999999999999975
Q ss_pred -ChHHHHHHHHHH-Hh
Q 005305 550 -KLKEAAEVIRTL-RR 563 (703)
Q Consensus 550 -~~~~A~~~~~~m-~~ 563 (703)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999998 54
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.33 E-value=4.8e-11 Score=126.13 Aligned_cols=196 Identities=15% Similarity=0.030 Sum_probs=123.6
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHhhhcCc-----CC----hhhHHHHHHHHHhcCC--------------------HHHHH
Q 005305 368 VANSALVDFYSKWGRIEDARHVFDKMLC-----KN----VISWNALIAGYGNHGR--------------------GEEAV 418 (703)
Q Consensus 368 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 418 (703)
.++..+...|...|++++|...|++... ++ ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3444555555566666666655555421 11 2355566666666666 66666
Q ss_pred HHHHHHHHc----CCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc----hHHHHHHHHHHHhcCChHHHH
Q 005305 419 ELFEQMLLN----GMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR----AMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 419 ~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 489 (703)
..+++..+. +..|.. .++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 666665431 112222 45666666777777777777777766542111122 236667777777888888887
Q ss_pred HHHHhCC----CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC------cchHHHHHHHHHhCCChHHHH
Q 005305 490 ALIRGAP----FKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK------LSNYVVLLNIYNSSGKLKEAA 555 (703)
Q Consensus 490 ~~~~~m~----~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~A~ 555 (703)
+.+++.. ..++ ..++..+...+...|++++|...+++++++.+.. ...+..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7776531 1112 3466777778888888888888888877554332 457888999999999999999
Q ss_pred HHHHHHHh
Q 005305 556 EVIRTLRR 563 (703)
Q Consensus 556 ~~~~~m~~ 563 (703)
+.+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888764
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.32 E-value=4e-11 Score=122.79 Aligned_cols=197 Identities=15% Similarity=0.026 Sum_probs=128.2
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHhhhcCc-----CC----hhhHHHHHHHHHhcCC--------------------HHHHH
Q 005305 368 VANSALVDFYSKWGRIEDARHVFDKMLC-----KN----VISWNALIAGYGNHGR--------------------GEEAV 418 (703)
Q Consensus 368 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 418 (703)
.++..+...|...|++++|...|++... ++ ..++..+...|...|+ +++|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 4455566666666666666666665421 11 2255666666666666 77777
Q ss_pred HHHHHHHHc----CCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc----hHHHHHHHHHHHhcCChHHHH
Q 005305 419 ELFEQMLLN----GMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR----AMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 419 ~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 489 (703)
..+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|.+.|++++|.
T Consensus 164 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 243 (338)
T 3ro2_A 164 DLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 243 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 776665431 11222 245666667777778888888777776542111111 236677777788888888888
Q ss_pred HHHHhCC----CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC------cchHHHHHHHHHhCCChHHHH
Q 005305 490 ALIRGAP----FKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK------LSNYVVLLNIYNSSGKLKEAA 555 (703)
Q Consensus 490 ~~~~~m~----~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~A~ 555 (703)
+.+++.. ..++ ..++..+...+...|++++|...+++++++.|.. ...+..++.+|.+.|++++|.
T Consensus 244 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 323 (338)
T 3ro2_A 244 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM 323 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 8776531 1112 4466777778888889998888888887654432 347888999999999999999
Q ss_pred HHHHHHHhC
Q 005305 556 EVIRTLRRK 564 (703)
Q Consensus 556 ~~~~~m~~~ 564 (703)
+.+++..+.
T Consensus 324 ~~~~~a~~~ 332 (338)
T 3ro2_A 324 HFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999988754
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.30 E-value=1.6e-10 Score=107.50 Aligned_cols=165 Identities=16% Similarity=0.122 Sum_probs=121.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHH
Q 005305 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475 (703)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 475 (703)
+...|..+...|...|++++|++.|++.++. .|+ ..++..+..++.+.|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4456666777777777777777777777664 343 356666677777777777777777777652 23345566666
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHH
Q 005305 476 IELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553 (703)
Q Consensus 476 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 553 (703)
...+...+++++|.+.+.+. ...| +...|..+...+...|++++|...++++++++|+++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 67777778888887777653 2223 566778888888888888888888888888899988889999999999999999
Q ss_pred HHHHHHHHHhCC
Q 005305 554 AAEVIRTLRRKG 565 (703)
Q Consensus 554 A~~~~~~m~~~~ 565 (703)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999998877643
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.28 E-value=2.6e-11 Score=131.44 Aligned_cols=207 Identities=11% Similarity=-0.010 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCH-HHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005305 349 EHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRI-EDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQM 424 (703)
Q Consensus 349 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~-~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 424 (703)
+.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|+..|++.
T Consensus 85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444443332 223566677777777777777 77777777763 234668888888888889999999999888
Q ss_pred HHcCCCcCHHHHHHHHHHHHcc---------CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhc--------CChHH
Q 005305 425 LLNGMRPNHVTFLAVLSACSRS---------GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE--------GLLDE 487 (703)
Q Consensus 425 ~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~~~~ 487 (703)
.+. .|+...+..+..++... |++++|...|++..+. -+.+...|..+..+|... |++++
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 874 57777888888888888 8999999999988772 234577888888888888 88999
Q ss_pred HHHHHHhC-CCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 488 AFALIRGA-PFKT----TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 488 A~~~~~~m-~~~p----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..+..++...|++++|.+.+.+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999874 3345 6789999999999999999999999999999999999999999999999999999976543
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.27 E-value=9e-11 Score=124.55 Aligned_cols=98 Identities=11% Similarity=-0.107 Sum_probs=48.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCC----CchHHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----HH
Q 005305 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIK----PRAMHYACMIELLGREGLLDEAFALIRGAP-F---KTT----KN 502 (703)
Q Consensus 435 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~p~----~~ 502 (703)
++..+...+...|++++|...++...+...-. .....+..+...|.+.|++++|.+.+++.. . .++ ..
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 265 ANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 34444444455555555555544443311000 012344555555555555555555554421 0 011 23
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCCCC
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGMEP 532 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 532 (703)
++..+...+...|+.++|...+++++++.+
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 555566666677777777777777665544
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.27 E-value=1.2e-08 Score=113.75 Aligned_cols=436 Identities=11% Similarity=-0.011 Sum_probs=283.5
Q ss_pred CChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCC---hHHH
Q 005305 108 KRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM---MIDA 184 (703)
Q Consensus 108 g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~---~~~A 184 (703)
....+.+..|+.....+ +-|..+|..++..+...+.++.++.+++.+++. ++.....|..-+..-.+.|. ++.+
T Consensus 46 ~~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 46 RDESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp CCCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHH
T ss_pred cCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHH
Confidence 34556677777777775 678999999999999999999999999999987 46677788888988888888 9999
Q ss_pred HHHHccCCC-----CCcccHHHHHHHHHhCCCh----hH----HHHHHHHhHH-cCC-CCCh-hhHHHHHHHHhc-----
Q 005305 185 RRLFDEMPE-----RNLVSCNMIIAGMIDSGDY----LE----AFLLFLDLWE-EFS-DCGS-RTFATMIRASAG----- 243 (703)
Q Consensus 185 ~~~f~~m~~-----~d~~~~~~li~~~~~~g~~----~~----A~~~~~~m~~-~g~-~p~~-~t~~~ll~a~~~----- 243 (703)
..+|++... |++..|...+.-..+.++. ++ ..++|+.... -|. .|+. ..|...+.-...
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 999987653 6777888877765555443 23 3356665443 355 4543 344444433221
Q ss_pred ----CCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHH
Q 005305 244 ----LELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDL 319 (703)
Q Consensus 244 ----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l 319 (703)
.++++.++++|..++......-..+|......-...+. ..+.+++.+ ....++.|...
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~ 264 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHH
Confidence 12345566666666532111112233222111100000 001111111 11233344445
Q ss_pred HHHHHH--CCCC---------------C-----CH---hhHHHHHHHHhccC-------CHHHHHHHHHHHHHcCCCCch
Q 005305 320 YYEMRD--SGVK---------------M-----DH---FTFSMIIRICTRLA-------SLEHAKQAHAGLVRHGFGLDI 367 (703)
Q Consensus 320 ~~~m~~--~g~~---------------p-----d~---~t~~~ll~a~~~~~-------~~~~a~~~~~~~~~~g~~~~~ 367 (703)
+.++.. .++. | +. ..|...+.---..+ ..+....+|++++.. ++.+.
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~ 343 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAP 343 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCH
Confidence 544322 1111 1 00 12222222211111 123456778888876 34477
Q ss_pred HHHHHHHhhHHhcCCHHHHH-HHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CcC--
Q 005305 368 VANSALVDFYSKWGRIEDAR-HVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGM---------RPN-- 432 (703)
Q Consensus 368 ~~~~~Li~~y~k~g~~~~A~-~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------~p~-- 432 (703)
.+|-..+..+...|+.++|. .+|++... .+...|-..+...-+.|++++|.++|+++..... .|+
T Consensus 344 ~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~ 423 (679)
T 4e6h_A 344 EIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNE 423 (679)
T ss_dssp HHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcch
Confidence 88888888888999999996 99988742 4556688888888999999999999999986410 142
Q ss_pred ----------HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcC-ChHHHHHHHHhC-C-CCC
Q 005305 433 ----------HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG-LLDEAFALIRGA-P-FKT 499 (703)
Q Consensus 433 ----------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~-~~p 499 (703)
...|...+....+.|.++.|+.+|..+.+..+ .+....|...+.+-.+.| +.+.|.++|+.. . .+.
T Consensus 424 ~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~ 502 (679)
T 4e6h_A 424 SAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT 502 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred hhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 23577777777888999999999999987311 122344544444444555 489999999874 2 233
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC---CcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE---KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 500 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
+...|...+.-....|+.+.|+.++++++...|+ ....|...++.-.+.|..+.+.++.+++.+.-.
T Consensus 503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 6677888888888899999999999999988873 346788888888999999999999999987654
No 65
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.26 E-value=2.3e-10 Score=120.84 Aligned_cols=118 Identities=14% Similarity=-0.033 Sum_probs=61.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc----hHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HH
Q 005305 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR----AMHYACMIELLGREGLLDEAFALIRGAP----FKTT----KN 502 (703)
Q Consensus 435 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~ 502 (703)
++..+...+...|++++|..+++...+...-.++ ...+..+...|.+.|++++|.+.+++.. ..++ ..
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 3444444455555555555555444321100011 3344555555556666666655554421 0111 33
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCCC------CCCcchHHHHHHHHHhCCChH
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGME------PEKLSNYVVLLNIYNSSGKLK 552 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~~g~~~ 552 (703)
++..+...+...|++++|...+++++++. |....++..++.+|...|+..
T Consensus 309 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 309 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 55666666777777777777777666442 223456777777887777653
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.26 E-value=1.5e-10 Score=118.50 Aligned_cols=62 Identities=13% Similarity=-0.078 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCC
Q 005305 471 HYACMIELLGREGLLDEAFALIRGAP----FKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEP 532 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p 532 (703)
.+..+...|...|++++|.+.+++.. ..++ ..++..+...+...|++++|...+++++++.+
T Consensus 265 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 265 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 34444555555555555555544321 0011 23455566666666666666666666665544
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=2.3e-11 Score=123.40 Aligned_cols=236 Identities=13% Similarity=0.054 Sum_probs=118.8
Q ss_pred cccHHHHHHHHHHcCCcHHHHHHHHHHHHC-------CCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHc------CC
Q 005305 297 TVGWNTIIAGYALHGYSEEALDLYYEMRDS-------GVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRH------GF 363 (703)
Q Consensus 297 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~ 363 (703)
..+|..+...|...|++++|+.+|+++.+. ..+.....+..+...+...|+++.|...+..+++. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346777888888888888888888887652 11222334555555666666666666666666543 11
Q ss_pred -CCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCcCH-HH
Q 005305 364 -GLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLN------GMRPNH-VT 435 (703)
Q Consensus 364 -~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~-~t 435 (703)
+....++..+...|...|++++|...|++. .+. +-.|+. ..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-------------------------------~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRA-------------------------------LEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH-------------------------------HHHHHHHHCTTCHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHH-------------------------------HHHHHHhcCCCChHHHHH
Confidence 112344455555555555555555555444 331 111211 33
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhc-----CCCC-chHHHHHHHHHHHhcCChHHHHHHHHhCC----------CCC
Q 005305 436 FLAVLSACSRSGLSERGWEIFQSMSRDH-----KIKP-RAMHYACMIELLGREGLLDEAFALIRGAP----------FKT 499 (703)
Q Consensus 436 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p 499 (703)
+..+...+...|++++|..+|+.+.+.. +..| ....+..+...|.+.|++++|.+.++++. ..+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 3344444444444444444444443310 0011 12334444445555555555555444321 001
Q ss_pred C-------HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 500 T-------KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 500 ~-------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
. ...+..+...+...+.+.++...+++.....|..+.++..++.+|.+.|++++|.+.+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 111222223333445555666667777777777788888999999999999999999887754
No 68
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.23 E-value=1.3e-09 Score=110.76 Aligned_cols=218 Identities=9% Similarity=0.056 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHh-------ccCCH-------HHHHHHHHHHHHcCCCCchHHHHHHHhhHHh
Q 005305 314 EEALDLYYEMRDSGVKMDHFTFSMIIRICT-------RLASL-------EHAKQAHAGLVRHGFGLDIVANSALVDFYSK 379 (703)
Q Consensus 314 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k 379 (703)
++|+.+|++..... +-+...|......+. ..|+. ++|..+++.+++.-.+.+..++..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555665555431 223334444443332 23553 6666777766663122345567777777777
Q ss_pred cCCHHHHHHHhhhcCc--C-Chh-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH-ccCCHHHHHH
Q 005305 380 WGRIEDARHVFDKMLC--K-NVI-SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS-RSGLSERGWE 454 (703)
Q Consensus 380 ~g~~~~A~~~f~~m~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~ 454 (703)
.|++++|..+|++... | +.. .|..+...+.+.|++++|..+|++..+... ++...|........ ..|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777632 2 233 677777777777777777777777776421 22233333322222 3577788888
Q ss_pred HHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 005305 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP----FKT--TKNMWAALLTACRVNGNLELGKFAAEKLY 528 (703)
Q Consensus 455 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 528 (703)
+|+...+. .+.+...|..+++.+.+.|++++|..+|++.- ..| ....|..++......|+.+.|..++++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88777663 23356677777777777788888877777631 233 35577777777777788777777777777
Q ss_pred CCCCCCc
Q 005305 529 GMEPEKL 535 (703)
Q Consensus 529 ~~~p~~~ 535 (703)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7777654
No 69
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.18 E-value=8.5e-10 Score=102.60 Aligned_cols=167 Identities=16% Similarity=0.066 Sum_probs=138.7
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSA 442 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 442 (703)
+..+|..|...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|+..+.+....... +...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 56788889999999999999999999874 346678888999999999999999999998875322 44666777778
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 005305 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELG 520 (703)
Q Consensus 443 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a 520 (703)
+...++++.+...+....+. .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 88899999999999988772 3455778888999999999999999999874 3334 577899999999999999999
Q ss_pred HHHHHHHhCCCCCCc
Q 005305 521 KFAAEKLYGMEPEKL 535 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~ 535 (703)
...++++++++|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999999753
No 70
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=2.3e-10 Score=129.17 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=130.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHH
Q 005305 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACM 475 (703)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 475 (703)
+..+|+.|...|.+.|++++|++.|++.++. .|+ ..++..+..++.+.|++++|.+.|++..+. -+-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3456777777888888888888888887773 554 467777778888888888888888887762 22346778888
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHH
Q 005305 476 IELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553 (703)
Q Consensus 476 i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 553 (703)
..+|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..|+.+|...|+|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888763 3344 466888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 005305 554 AAEVIRTLRR 563 (703)
Q Consensus 554 A~~~~~~m~~ 563 (703)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887653
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.18 E-value=2.3e-09 Score=109.00 Aligned_cols=228 Identities=10% Similarity=0.022 Sum_probs=159.9
Q ss_pred cccHHHHHH-HHhc----CCh----hHHHHHHHHHHHcCCCCCChhhHHHHHHHHh-------ccCCh-------HHHHH
Q 005305 95 AGICSQIEK-LVLN----KRY----REALELFEILEFEGGFDVGSSTYDALISACI-------GLRSI-------REVKR 151 (703)
Q Consensus 95 ~~~~~~li~-~~~~----g~~----~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~ 151 (703)
...|...+. -.++ ++. ++|+.+|+++.... +.+...|..+...+. ..|++ ++|..
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 345777777 3333 233 67888999988764 556677777777665 34775 88999
Q ss_pred HHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC--C-Ccc-cHHHHHHHHHhCCChhHHHHHHHHhHHcCC
Q 005305 152 VFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE--R-NLV-SCNMIIAGMIDSGDYLEAFLLFLDLWEEFS 227 (703)
Q Consensus 152 l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-d~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 227 (703)
+++..++.-.+.+...|..+...+.+.|++++|+++|++..+ | +.. .|..+...+.+.|++++|..+|++..+...
T Consensus 86 ~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 86 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 999988731134556888888889899999999999887654 3 333 788888888888999999999988876532
Q ss_pred CCChhhHHHHHHHH-hcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-------Cccc
Q 005305 228 DCGSRTFATMIRAS-AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-------TTVG 299 (703)
Q Consensus 228 ~p~~~t~~~ll~a~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-------~~~~ 299 (703)
++...|....... ...|+.+.|..+++.+++.. +.+..++..++..+.+.|++++|..+|++.... ....
T Consensus 166 -~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 166 -TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp -CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred -CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 2333343332222 23678888888888877763 456777777888888888888888888776441 2335
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHC
Q 005305 300 WNTIIAGYALHGYSEEALDLYYEMRDS 326 (703)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~l~~~m~~~ 326 (703)
|..++..+.+.|+.++|..+++++.+.
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777777777887777777664
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.17 E-value=9.5e-10 Score=115.61 Aligned_cols=194 Identities=8% Similarity=-0.004 Sum_probs=102.7
Q ss_pred HHHHHHhhHHhcCCHHHHHHHhhhcCc-----C-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcCH-
Q 005305 369 ANSALVDFYSKWGRIEDARHVFDKMLC-----K-----NVISWNALIAGYGNHGRGEEAVELFEQMLLN----GMRPNH- 433 (703)
Q Consensus 369 ~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~- 433 (703)
++..+...|...|++++|...|++... + ...+++.+...|...|++++|+..|++..+. +-.|..
T Consensus 145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 224 (383)
T 3ulq_A 145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG 224 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 444455555555555555555444311 1 1234555555566666666666666555432 111111
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhh---cCC-CCchHHHHHHHHHHHhcCChHHHHHHHHhCC-C-----CCC-HH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRD---HKI-KPRAMHYACMIELLGREGLLDEAFALIRGAP-F-----KTT-KN 502 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-----~p~-~~ 502 (703)
.++..+...+...|++++|...|+...+. .+. +.....+..+...|.+.|++++|.+.+++.- . .|. ..
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 304 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS 304 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34555555666666666666666555431 122 2224445556666666666666666665421 0 111 11
Q ss_pred HHHHHHHHHHHcCC---hhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 503 MWAALLTACRVNGN---LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 503 ~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.+..+...+...|+ .++|...+++. ...|.....+..|+.+|...|++++|.+.+++..+
T Consensus 305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 305 EFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23444445555565 55555555554 23333345677888888888888888888887754
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.17 E-value=8.7e-11 Score=119.09 Aligned_cols=242 Identities=13% Similarity=0.067 Sum_probs=148.8
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC--------C---CcccHHHHHHHHHHcCCcHHHHHHHHHHHHC-----
Q 005305 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE--------K---TTVGWNTIIAGYALHGYSEEALDLYYEMRDS----- 326 (703)
Q Consensus 263 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----- 326 (703)
+.+..++..+...|...|++++|...|+++.+ . ...+|..+...|...|++++|+..|++....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999988754 2 2346888899999999999999999998764
Q ss_pred -CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHc------CCCC-chHHHHHHHhhHHhcCCHHHHHHHhhhcCcC-
Q 005305 327 -GVKM-DHFTFSMIIRICTRLASLEHAKQAHAGLVRH------GFGL-DIVANSALVDFYSKWGRIEDARHVFDKMLCK- 396 (703)
Q Consensus 327 -g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~- 396 (703)
+-.| ...++..+...+...|+++.|...+..+++. +..+ ...++..+...|.+.|++++|...|++....
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2222 3456778888899999999999999988764 2112 3345555666666666666666666554211
Q ss_pred ----------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCC
Q 005305 397 ----------NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIK 466 (703)
Q Consensus 397 ----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 466 (703)
...+|..+...|...|++++|+..|+++.+. .|+. .+ ....
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~-~~--------------------------~~~~ 234 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR--AHER-EF--------------------------GSVD 234 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHH-HH--------------------------C---
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHh-cC--------------------------CCCC
Confidence 1224444555555555555555555555442 0000 00 0001
Q ss_pred Cc-------hHHHHHHHHHHHhcCChHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 467 PR-------AMHYACMIELLGREGLLDEAFALIRGAPF-KT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 467 p~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
+. ...+..+...+...+.+.+|...++.... .| +..+|..+..++...|++++|...+++++++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 11222233334455566666666665432 23 3457888888899999999999999988877664
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.14 E-value=1.8e-09 Score=113.52 Aligned_cols=227 Identities=8% Similarity=-0.012 Sum_probs=156.1
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHhccCCHHHHHHHHHHHHHcC--C----CCchHHHHH
Q 005305 304 IAGYALHGYSEEALDLYYEMRDS----GVKM-DHFTFSMIIRICTRLASLEHAKQAHAGLVRHG--F----GLDIVANSA 372 (703)
Q Consensus 304 i~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~----~~~~~~~~~ 372 (703)
...+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+..+++.. . .....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 33455566666666666666542 1111 12345555556666666666666666665421 1 012346777
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCc-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcCH-HHHHH
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLC-----KN----VISWNALIAGYGNHGRGEEAVELFEQMLLN----GMRPNH-VTFLA 438 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ 438 (703)
+...|...|++++|...|++... ++ ..+++.+...|...|++++|+..|++..+. +..|+. .++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 78888888888888888877632 11 236788888999999999999999888762 332443 67888
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhc---CCCCchHHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 005305 439 VLSACSRSGLSERGWEIFQSMSRDH---KIKPRAMHYACMIELLGREGL---LDEAFALIRGAPFKTTK-NMWAALLTAC 511 (703)
Q Consensus 439 ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~~~~~ll~a~ 511 (703)
+...+...|++++|...++...+.. +-+.....+..+...|...|+ +++|+.++++....|+. ..+..+...+
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 349 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYY 349 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 8889999999999999998876521 111223345677888888898 89999999988655443 3667788899
Q ss_pred HHcCChhHHHHHHHHHhCC
Q 005305 512 RVNGNLELGKFAAEKLYGM 530 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~ 530 (703)
...|++++|...+++++++
T Consensus 350 ~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 350 HERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999988753
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.12 E-value=1.5e-09 Score=100.30 Aligned_cols=160 Identities=16% Similarity=0.054 Sum_probs=96.0
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 005305 368 VANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACS 444 (703)
Q Consensus 368 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 444 (703)
..+..+...|...|++++|...|+++.. .+...|..+...|...|++++|+..|+++.+. .
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~-------------- 72 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--A-------------- 72 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C--------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C--------------
Confidence 3444455555555666666655555532 23344455555555555555555555555443 1
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChhHHHH
Q 005305 445 RSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP--FKTTKNMWAALLTACRVNGNLELGKF 522 (703)
Q Consensus 445 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~ 522 (703)
+.+...+..+...|...|++++|.+.++++. .+.+...|..+...+...|++++|..
T Consensus 73 ---------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 131 (186)
T 3as5_A 73 ---------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131 (186)
T ss_dssp ---------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH
Confidence 2233444444555555555555555554421 12345566666777777777777777
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 523 AAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 523 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
.++++++..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 132 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 132 SFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777777777887788888888888888888888888877643
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.11 E-value=3.3e-08 Score=103.25 Aligned_cols=224 Identities=11% Similarity=0.032 Sum_probs=132.1
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCC---CC--chHHHHHHHhhHHhcCCHHHHHHHhhhcCc----------C-ChhhHHH
Q 005305 340 RICTRLASLEHAKQAHAGLVRHGF---GL--DIVANSALVDFYSKWGRIEDARHVFDKMLC----------K-NVISWNA 403 (703)
Q Consensus 340 ~a~~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----------~-~~~~~~~ 403 (703)
..+...|+++.|...+....+... .+ ...+.+.+...|...|++++|...+++... + ....+..
T Consensus 61 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 140 (373)
T 1hz4_A 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHH
Confidence 334444555555555544443110 00 112344555666667777777666665521 1 1234455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC--c--CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHH-----H
Q 005305 404 LIAGYGNHGRGEEAVELFEQMLLNGMR--P--NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA-----C 474 (703)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~ 474 (703)
+...|...|++++|...+++....... | ...++..+...+...|++++|...++.......-......+. .
T Consensus 141 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 220 (373)
T 1hz4_A 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV 220 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHH
Confidence 666677777777777777776653211 1 124556666677777888888888777654211111111111 2
Q ss_pred HHHHHHhcCChHHHHHHHHhCCC-CCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC------CcchHHHHH
Q 005305 475 MIELLGREGLLDEAFALIRGAPF-KTT-----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPE------KLSNYVVLL 542 (703)
Q Consensus 475 li~~~~~~g~~~~A~~~~~~m~~-~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~ 542 (703)
.+..+...|++++|...+++... .|. ...+..+...+...|++++|...+++++...+. ....+..++
T Consensus 221 ~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la 300 (373)
T 1hz4_A 221 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 300 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 33446678888888888876431 121 224566677778888888888888777643321 123677788
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 005305 543 NIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 543 ~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.+|...|+.++|.+.+++..+
T Consensus 301 ~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 301 QLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 899999999999999888764
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.08 E-value=5.5e-09 Score=100.82 Aligned_cols=204 Identities=11% Similarity=0.060 Sum_probs=142.4
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHH
Q 005305 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIA 406 (703)
Q Consensus 330 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~ 406 (703)
.|+..+......+...|++++|...+..+++...+++...+..+...|.+.|++++|...|++... .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 355667777777888888888888888888876545666666688888888888888888887742 34557778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCcC-H-------HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc---hHHHHHH
Q 005305 407 GYGNHGRGEEAVELFEQMLLNGMRPN-H-------VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR---AMHYACM 475 (703)
Q Consensus 407 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 475 (703)
.|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|...|+.+.+ +.|+ ...|..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 888888888888888888774 343 2 3466666777788888888888888765 3454 4566677
Q ss_pred HHHHHhcCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 476 IELLGREGLL--DEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 476 i~~~~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
...|...|+. ++|..+. ..+...+..+. ....+.+++|...++++++++|+++.+...+..+.
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 7777665543 3332221 12333333322 33456678999999999999999877776666553
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.04 E-value=1.5e-09 Score=117.40 Aligned_cols=207 Identities=9% Similarity=-0.066 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCCh-HHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHh
Q 005305 147 REVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMM-IDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDL 222 (703)
Q Consensus 147 ~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~-~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m 222 (703)
+.+.+.++...+.. +.+...+..+...|...|++ ++|++.|++..+ .+...|..+...|.+.|++++|++.|++.
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444433221 22344455555555555555 555555554432 23445555666666666666666666665
Q ss_pred HHcCCCCChhhHHHHHHHHhcC---------CChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhC--------CCHHHH
Q 005305 223 WEEFSDCGSRTFATMIRASAGL---------ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKC--------GSIEDA 285 (703)
Q Consensus 223 ~~~g~~p~~~t~~~ll~a~~~~---------~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~--------g~~~~A 285 (703)
.+. .|+...+..+...+... |++++|...+..+++.. +.+...+..+..+|... |++++|
T Consensus 164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 543 34445555555566666 66666666666666654 44455666666666666 666666
Q ss_pred HHHHhhcCC------CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHH
Q 005305 286 QGVFDEMSE------KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGL 358 (703)
Q Consensus 286 ~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 358 (703)
.+.|++..+ .+...|..+...|...|++++|++.|++..+.. +-+...+..+..++...|++++|...+..+
T Consensus 241 ~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 241 LSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 666665532 244456666666666666666666666665542 223344555555666666666666544433
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.04 E-value=8.6e-09 Score=99.46 Aligned_cols=188 Identities=10% Similarity=-0.006 Sum_probs=112.0
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC----KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVL 440 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 440 (703)
|+..+..+...|.+.|++++|...|++... ++...|..+...|...|++++|+..|++..+. .|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 445666666677777777777777776532 45555555666777777777777777776663 4443 5566666
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCch-------HHHHHHHHHHHhcCChHHHHHHHHh-CCCCCC---HHHHHHHHH
Q 005305 441 SACSRSGLSERGWEIFQSMSRDHKIKPRA-------MHYACMIELLGREGLLDEAFALIRG-APFKTT---KNMWAALLT 509 (703)
Q Consensus 441 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~---~~~~~~ll~ 509 (703)
.++...|++++|...|+...+.. +.+. ..|..+...+.+.|++++|.+.|++ +...|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 66777777777777777666521 1222 3455566666666677777666665 334454 234555554
Q ss_pred HHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 510 ACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 510 a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
.+.. .+...++++..+.+.++..|..+ .....|.+++|.+.+++..+.
T Consensus 162 ~~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 5433 33344455555555544333322 233445569999999888754
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.03 E-value=1.1e-08 Score=107.21 Aligned_cols=219 Identities=13% Similarity=0.048 Sum_probs=119.3
Q ss_pred hccCCHHHHHHHHHHHHHcC--CC---CchHHHHHHHhhHHhcCCHHHHHHHhhhcCc-----C-----ChhhHHHHHHH
Q 005305 343 TRLASLEHAKQAHAGLVRHG--FG---LDIVANSALVDFYSKWGRIEDARHVFDKMLC-----K-----NVISWNALIAG 407 (703)
Q Consensus 343 ~~~~~~~~a~~~~~~~~~~g--~~---~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~-----~~~~~~~li~~ 407 (703)
...|+++.|...+..+.+.. .. ....++..+...|...|+++.|...+++... + ...+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 34455555555555554321 00 0123455555666666666666555554411 1 12345556666
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhc---CCCCchHHHHHHHHHH
Q 005305 408 YGNHGRGEEAVELFEQMLLN----GMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDH---KIKPRAMHYACMIELL 479 (703)
Q Consensus 408 ~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li~~~ 479 (703)
|...|++++|++.|++..+. +-.+. ..++..+...+...|++++|...|+...+.. +.+.....+..+...|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 66666666666666665542 11111 1345556666666777777776666654410 2222245566666667
Q ss_pred HhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHHcCC---hhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC
Q 005305 480 GREGLLDEAFALIRGA----PF--KTT-KNMWAALLTACRVNGN---LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549 (703)
Q Consensus 480 ~~~g~~~~A~~~~~~m----~~--~p~-~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 549 (703)
.+.|++++|.+.+++. +. .|. ...+..+...+...++ .++|...+++. +..|.....+..++..|...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHCC
Confidence 7777777777666542 11 122 2233444444445555 55555555542 222333456678888888889
Q ss_pred ChHHHHHHHHHHH
Q 005305 550 KLKEAAEVIRTLR 562 (703)
Q Consensus 550 ~~~~A~~~~~~m~ 562 (703)
++++|.+.+++..
T Consensus 351 ~~~~A~~~~~~al 363 (378)
T 3q15_A 351 HFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9888888887765
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.02 E-value=7.9e-09 Score=95.39 Aligned_cols=158 Identities=13% Similarity=0.036 Sum_probs=120.6
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHH
Q 005305 333 FTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYG 409 (703)
Q Consensus 333 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~ 409 (703)
..+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667778889999999999999887754 3467889999999999999999999999874 346678888889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 005305 410 NHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 410 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 489 (703)
..|++++|++.|+++.+.. ..+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL--RPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999988752 235567777777788888888888888877662 2234455555666666666666666
Q ss_pred HHHHh
Q 005305 490 ALIRG 494 (703)
Q Consensus 490 ~~~~~ 494 (703)
+.+++
T Consensus 165 ~~~~~ 169 (186)
T 3as5_A 165 PHFKK 169 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.02 E-value=9.4e-08 Score=99.76 Aligned_cols=257 Identities=12% Similarity=-0.023 Sum_probs=128.7
Q ss_pred HHHhCCChhHHHHHHHHhHHcCCCCChh----hHHHHHHHHhcCCChHHHHHHHHHHHHhCC-CCc----HHHHHHHHHH
Q 005305 205 GMIDSGDYLEAFLLFLDLWEEFSDCGSR----TFATMIRASAGLELISVGKQLHSCALKMGF-GDN----VFVSCALIDM 275 (703)
Q Consensus 205 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~----~~~~~~Li~~ 275 (703)
.+...|++++|...+++........+.. ++..+...+...|+++.|...+...++..- ..+ ..+.+.+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445566666666665554432111111 233333444455555555555555443210 011 1234455566
Q ss_pred HHhCCCHHHHHHHHhhcCC-------C----CcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCC--C--CHhhHHHHHH
Q 005305 276 YSKCGSIEDAQGVFDEMSE-------K----TTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVK--M--DHFTFSMIIR 340 (703)
Q Consensus 276 y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--d~~t~~~ll~ 340 (703)
|...|++++|...|++... + ....+..+...|...|++++|...+++....... + ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 6666776666666655431 1 0123444555666667777777776665543211 1 1233444555
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCc--h-HHHH---HHHhhHHhcCCHHHHHHHhhhcCcCC-------hhhHHHHHHH
Q 005305 341 ICTRLASLEHAKQAHAGLVRHGFGLD--I-VANS---ALVDFYSKWGRIEDARHVFDKMLCKN-------VISWNALIAG 407 (703)
Q Consensus 341 a~~~~~~~~~a~~~~~~~~~~g~~~~--~-~~~~---~Li~~y~k~g~~~~A~~~f~~m~~~~-------~~~~~~li~~ 407 (703)
.+...|++++|...++........++ . .... ..+..+...|+.++|...+++...++ ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 56666666666666666654311111 1 1111 23344666777777777776664321 1134555666
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 408 YGNHGRGEEAVELFEQMLLN----GMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 408 ~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
+...|++++|...+++.... |..++. .++..+..++...|+.++|...++....
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66777777777777665442 111122 1344444555566666666666655543
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.00 E-value=1.2e-07 Score=99.31 Aligned_cols=225 Identities=10% Similarity=0.033 Sum_probs=153.5
Q ss_pred HHHHHcCCcHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHhccCCHHHHHHHHHHHHHcC-----CCC-chHHHHHH
Q 005305 305 AGYALHGYSEEALDLYYEMRDSGV-KMD----HFTFSMIIRICTRLASLEHAKQAHAGLVRHG-----FGL-DIVANSAL 373 (703)
Q Consensus 305 ~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-----~~~-~~~~~~~L 373 (703)
..+...|++++|+..|++..+... .+| ..++..+...+...|+++.|...+..+++.. ..+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 345566777777777776654311 122 2345555666667777777777776665521 111 24466777
Q ss_pred HhhHHhcCCHHHHHHHhhhcCc-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcCHHHHHHHH
Q 005305 374 VDFYSKWGRIEDARHVFDKMLC-----KN----VISWNALIAGYGNHGRGEEAVELFEQMLLN----GMRPNHVTFLAVL 440 (703)
Q Consensus 374 i~~y~k~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~ll 440 (703)
...|...|++++|.+.|++... ++ ..+++.+...|...|++++|+..|++..+. +......++..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 8888888888888888876632 11 246777888888899999999999888761 1122246777888
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCC---CCchHHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHHHHH
Q 005305 441 SACSRSGLSERGWEIFQSMSRDHKI---KPRAMHYACMIELLGREGL---LDEAFALIRGAPFKTTK-NMWAALLTACRV 513 (703)
Q Consensus 441 ~a~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~-~~~~~ll~a~~~ 513 (703)
..+.+.|++++|..+++...+...- +.....+..+...|...|+ +++|+..+++....|+. ..+..+...+..
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence 8899999999999999888763322 2223456666677777888 88999999886654443 356678888899
Q ss_pred cCChhHHHHHHHHHhC
Q 005305 514 NGNLELGKFAAEKLYG 529 (703)
Q Consensus 514 ~g~~~~a~~~~~~~~~ 529 (703)
.|++++|...++++++
T Consensus 349 ~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 349 SCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999998888764
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.99 E-value=4.1e-09 Score=104.76 Aligned_cols=164 Identities=17% Similarity=0.137 Sum_probs=82.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhc-----CCCC
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQMLLN------GMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDH-----KIKP 467 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p 467 (703)
+|..+...|...|++++|+..|++..+. .-.|+ ..++..+...+...|++++|..+|+.+.+.. .-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4455555555555555555555555442 11122 2445555555666666666666665554420 0011
Q ss_pred -chHHHHHHHHHHHhcCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHHcCCh------hHHHHHHHHHhC
Q 005305 468 -RAMHYACMIELLGREGLLDEAFALIRGAP----------FKTT-KNMWAALLTACRVNGNL------ELGKFAAEKLYG 529 (703)
Q Consensus 468 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------~~p~-~~~~~~ll~a~~~~g~~------~~a~~~~~~~~~ 529 (703)
....+..+...|.+.|++++|.+.+++.. ..+. ...|..+.......+.. ..+...++....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 23445556666666666666666655421 1111 12233322222222222 222222222223
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 530 MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 530 ~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
..|..+..+..++.+|...|++++|.+++++..+
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566788899999999999999999988764
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.88 E-value=5e-08 Score=98.14 Aligned_cols=214 Identities=10% Similarity=-0.017 Sum_probs=109.4
Q ss_pred CHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHC----CCCCC-HhhHHHHHHHHhccCCHHHHHHHH
Q 005305 281 SIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDS----GVKMD-HFTFSMIIRICTRLASLEHAKQAH 355 (703)
Q Consensus 281 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~ 355 (703)
++++|...|++. ...|...|++++|++.|.+..+. |-+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477787777664 66677888888888888776542 21111 234455555555555555555555
Q ss_pred HHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCcC--
Q 005305 356 AGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH-GRGEEAVELFEQMLLNGMRPN-- 432 (703)
Q Consensus 356 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-- 432 (703)
..+++.. .+.|+...+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 101 ~~Al~l~---------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~ 152 (292)
T 1qqe_A 101 ENAIQIF---------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQ 152 (292)
T ss_dssp HHHHHHH---------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTT
T ss_pred HHHHHHH---------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCC
Confidence 5544321 011111111 22455555566664 6666666666665542 111
Q ss_pred -----HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCch-----HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 005305 433 -----HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRA-----MHYACMIELLGREGLLDEAFALIRGA-PFKTTK 501 (703)
Q Consensus 433 -----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 501 (703)
..++..+...+...|++++|...|+...+...-.+.. ..|..+...+...|++++|...+++. ...|+.
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2345555666666666666666666665521111111 13455555666666666666666653 223321
Q ss_pred H------HHHHHHHHHH--HcCChhHHHHHHHHHhCCCCC
Q 005305 502 N------MWAALLTACR--VNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 502 ~------~~~~ll~a~~--~~g~~~~a~~~~~~~~~~~p~ 533 (703)
. .+..++.++. ..+++++|...++++..++|.
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 1 2333444443 234455566666555555554
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.88 E-value=1.1e-08 Score=115.41 Aligned_cols=162 Identities=14% Similarity=0.122 Sum_probs=117.7
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLS 441 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 441 (703)
+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+...|.+.|++++|+..|++.++. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 456677777777788888888877777632 34567777778888888888888888887773 554 467777777
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhH
Q 005305 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLEL 519 (703)
Q Consensus 442 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~ 519 (703)
++...|++++|.+.|++..+. -+-+...|..+..+|.+.|++++|++.|++. ...| +...|..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 888888888888888877662 2234667777888888888888888887763 3344 45677788888888888888
Q ss_pred HHHHHHHHhCCC
Q 005305 520 GKFAAEKLYGME 531 (703)
Q Consensus 520 a~~~~~~~~~~~ 531 (703)
|.+.+++++++.
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 888777776543
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.85 E-value=1.4e-07 Score=93.54 Aligned_cols=197 Identities=13% Similarity=0.089 Sum_probs=110.4
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHHc------CCC-CchHHHHHHHhhHHhcCCHHHHHHHhhhcCc-----------
Q 005305 334 TFSMIIRICTRLASLEHAKQAHAGLVRH------GFG-LDIVANSALVDFYSKWGRIEDARHVFDKMLC----------- 395 (703)
Q Consensus 334 t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----------- 395 (703)
++..+...+...|+++.|...+..+++. +-. ....++..+...|...|++++|...|++...
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 124 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP 124 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444445555555555555544432 111 1334556666666666666666666665521
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHhhc-----
Q 005305 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLN------GMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSRDH----- 463 (703)
Q Consensus 396 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----- 463 (703)
....+|..+...|...|++++|+..|++..+. +-.|+ ..++..+...+...|++++|..+++.+.+..
T Consensus 125 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 204 (283)
T 3edt_B 125 DVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEF 204 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 12345666777777777777777777777653 11333 3566777777888888888888887776520
Q ss_pred -CCCCc-hHHHHHHHHHHHhcC------ChHHHHHHHHhCCC-CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCC
Q 005305 464 -KIKPR-AMHYACMIELLGREG------LLDEAFALIRGAPF-KT-TKNMWAALLTACRVNGNLELGKFAAEKLYGM 530 (703)
Q Consensus 464 -~~~p~-~~~~~~li~~~~~~g------~~~~A~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~ 530 (703)
...+. ...+..+...+...+ .+.++...++.... .| ...++..+...+...|++++|...++++++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11222 223333333333322 34444445555432 23 2347788888999999999999999988764
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.84 E-value=3.6e-08 Score=99.23 Aligned_cols=227 Identities=10% Similarity=0.022 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhh
Q 005305 315 EALDLYYEMRDSGVKMDHFTFSMIIRICTR--LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDK 392 (703)
Q Consensus 315 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 392 (703)
+|.+++++..+. .++....| .++ .. .++++.|...+..+ ...|...|++++|...|++
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 466666666654 23221112 222 21 12377777766665 4457788999999988887
Q ss_pred cCc-------C--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcC-HHHHHHHHHHHHcc-CCHHHHHHHHH
Q 005305 393 MLC-------K--NVISWNALIAGYGNHGRGEEAVELFEQMLLN----GMRPN-HVTFLAVLSACSRS-GLSERGWEIFQ 457 (703)
Q Consensus 393 m~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~-g~~~~a~~~~~ 457 (703)
... + ...+|+.+...|...|++++|+..|++..+. |-.+. ..++..+..++... |++++|...|+
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 632 1 1457889999999999999999999988763 11111 35788888999996 99999999999
Q ss_pred HhHhhcCCCCc----hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC---CH-----HHHHHHHHHHHHcCChhHHHHHH
Q 005305 458 SMSRDHKIKPR----AMHYACMIELLGREGLLDEAFALIRGA-PFKT---TK-----NMWAALLTACRVNGNLELGKFAA 524 (703)
Q Consensus 458 ~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~-----~~~~~ll~a~~~~g~~~~a~~~~ 524 (703)
+..+...-..+ ...+..+...|.+.|++++|.+.|++. ...| +. ..|..+..++...|+++.|...+
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88763211111 356888999999999999999999873 2222 21 15677778889999999999999
Q ss_pred HHHhCCCCCCcch-----HHHHHHHHH--hCCChHHHHHHHHHH
Q 005305 525 EKLYGMEPEKLSN-----YVVLLNIYN--SSGKLKEAAEVIRTL 561 (703)
Q Consensus 525 ~~~~~~~p~~~~~-----~~~l~~~y~--~~g~~~~A~~~~~~m 561 (703)
++.++++|+.... +..++..|. ..+++++|.+.++++
T Consensus 223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 9999999985543 344566664 457788888877554
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.80 E-value=1.6e-07 Score=92.59 Aligned_cols=205 Identities=10% Similarity=0.018 Sum_probs=136.5
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc--C-C---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CcC-HHHHH
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC--K-N---VISWNALIAGYGNHGRGEEAVELFEQMLLNGM-RPN-HVTFL 437 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 437 (703)
+...+-.+...+.+.|++++|...|+.+.. | + ...|..+...|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 455666677777788888888888887743 2 2 44666777778888888888888888877422 122 24455
Q ss_pred HHHHHHHc--------cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 005305 438 AVLSACSR--------SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLT 509 (703)
Q Consensus 438 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 509 (703)
.+..++.. .|++++|...|+.+.+.+.- +......+.......+.+ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 56666666 77888888888877763211 122222211111100000 112456777
Q ss_pred HHHHcCChhHHHHHHHHHhCCCCCC---cchHHHHHHHHHhC----------CChHHHHHHHHHHHhCCCccCCceeEEE
Q 005305 510 ACRVNGNLELGKFAAEKLYGMEPEK---LSNYVVLLNIYNSS----------GKLKEAAEVIRTLRRKGLRMLPACSWIE 576 (703)
Q Consensus 510 a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~----------g~~~~A~~~~~~m~~~~~~~~~~~s~~~ 576 (703)
.+...|++++|...++++++..|++ +..+..++.+|... |++++|.+.+++..+...
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p---------- 226 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP---------- 226 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC----------
Confidence 8899999999999999999998984 34788999999877 999999999999876432
Q ss_pred ECCEEEEEEecCcCCcchHHHHHHHHHHHHHHHH
Q 005305 577 VKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISK 610 (703)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 610 (703)
.+|...+....+.++...+.+
T Consensus 227 -------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 -------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CChHHHHHHHHHHHHHHHHHH
Confidence 245556666666666666543
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.79 E-value=4.3e-07 Score=90.08 Aligned_cols=161 Identities=11% Similarity=-0.011 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-----chHHH
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP-----RAMHY 472 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-----~~~~~ 472 (703)
.++..+..++...|++++|++++.+.+..|..++. ..+...+..+.+.|+.+.|.+.++.|.+ ..| +..+.
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~---~~~d~~~~~d~~l 177 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN---AIEDTVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCccccccchHHH
Confidence 33344445555555566666555555443321222 4444445555556666666666655544 233 13333
Q ss_pred HHHHHH--HHhcC--ChHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCC----------CCCCcch
Q 005305 473 ACMIEL--LGREG--LLDEAFALIRGAPF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGM----------EPEKLSN 537 (703)
Q Consensus 473 ~~li~~--~~~~g--~~~~A~~~~~~m~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~----------~p~~~~~ 537 (703)
..|..+ ....| +..+|..+|+++.. .|+..+-..++.++.+.|++++|+..++.+.+. +|+++.+
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~ 257 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTF 257 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHH
Confidence 333333 11222 56666666665422 233222233334556666666666666655554 3666666
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 538 YVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 538 ~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+..++.++...|+ +|.++++++.+.
T Consensus 258 LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 258 LANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 6666666666665 666666666643
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.76 E-value=1.2e-07 Score=82.08 Aligned_cols=130 Identities=19% Similarity=0.242 Sum_probs=78.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHH
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELL 479 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 479 (703)
.|..+...|...|++++|+.+|+++.+.. ..+..++..+...+...|++++|..+++.+.+. .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~-------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--D-------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--C--------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--C--------------
Confidence 45555666666666666666666665532 113344444555555555555555555555431 1
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 005305 480 GREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559 (703)
Q Consensus 480 ~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 559 (703)
+.+...|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|.+.++
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 12344455555556666666666666666666667767777777888888888888888877
Q ss_pred HHHhC
Q 005305 560 TLRRK 564 (703)
Q Consensus 560 ~m~~~ 564 (703)
++.+.
T Consensus 128 ~~~~~ 132 (136)
T 2fo7_A 128 KALEL 132 (136)
T ss_dssp HHHHH
T ss_pred HHHcc
Confidence 77643
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.74 E-value=2e-07 Score=91.93 Aligned_cols=203 Identities=12% Similarity=0.006 Sum_probs=141.9
Q ss_pred CCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--chHHHHHHHhhHHhcCCHHHHHHHhhhcCc--C----ChhhH
Q 005305 330 MDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKMLC--K----NVISW 401 (703)
Q Consensus 330 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~----~~~~~ 401 (703)
.+...+-.....+...|++++|...+..+++..... ...++..+...|.+.|++++|...|+.... | ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 345566677778889999999999999999865332 167788899999999999999999999853 2 13457
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHH
Q 005305 402 NALIAGYGN--------HGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472 (703)
Q Consensus 402 ~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 472 (703)
..+...+.. .|++++|+..|++.++. .|+. ..... ...+...... ....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a--------------~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDA--------------TQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHH--------------HHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHH--------------HHHHHHHHHH-----HHHHH
Confidence 777788888 99999999999999985 4543 22111 1111111110 01234
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHc----------CChhHHHHHHHHHhCCCCCCcc-
Q 005305 473 ACMIELLGREGLLDEAFALIRGA-PFKTT----KNMWAALLTACRVN----------GNLELGKFAAEKLYGMEPEKLS- 536 (703)
Q Consensus 473 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~----------g~~~~a~~~~~~~~~~~p~~~~- 536 (703)
..+...|.+.|++++|...|++. ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56777888888888888888764 22233 34666677777655 8889999999999999998753
Q ss_pred --hHHHHHHHHHhCCChHH
Q 005305 537 --NYVVLLNIYNSSGKLKE 553 (703)
Q Consensus 537 --~~~~l~~~y~~~g~~~~ 553 (703)
++..+..++.+.|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 34455555555555444
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.74 E-value=1.4e-08 Score=90.88 Aligned_cols=138 Identities=9% Similarity=-0.023 Sum_probs=90.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHH
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 487 (703)
...|++++|+..+++... ..|+. ..+..+...|.+.|++++|.+.|+...+. -+-+...|..+...|.+.|++++
T Consensus 8 ~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp CCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHH
Confidence 344555666666655443 23332 34445555666666666666666666552 22345566667777777777777
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHH-HHHHhCCCCCCcchHHHHHHHHHhCCC
Q 005305 488 AFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFA-AEKLYGMEPEKLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 488 A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~y~~~g~ 550 (703)
|...|++. ...| +...|..+...+...|+.++|... ++++++++|+++.+|.....++.+.|+
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777653 3344 456777788888888887665554 588899999999999999888888775
No 94
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.72 E-value=2.9e-06 Score=91.65 Aligned_cols=99 Identities=6% Similarity=-0.034 Sum_probs=60.7
Q ss_pred cC-ChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCC-hHHH
Q 005305 107 NK-RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGM-MIDA 184 (703)
Q Consensus 107 ~g-~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~-~~~A 184 (703)
.| +...|..+|+.+... -|. ++.+.+.++|+..++. .|++.+|..-++.-.+.+. .+..
T Consensus 7 ~~~~i~~aR~vyer~l~~---~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL---YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp -----CCHHHHHHHHHHH---HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred cCcchHHHHHHHHHHHHH---CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 45 377777777777664 233 7888888888888874 4688888887777766653 2344
Q ss_pred HHHHccCC------CCCcccHHHHHHHHH----hCCChhHHHHHHHHhHH
Q 005305 185 RRLFDEMP------ERNLVSCNMIIAGMI----DSGDYLEAFLLFLDLWE 224 (703)
Q Consensus 185 ~~~f~~m~------~~d~~~~~~li~~~~----~~g~~~~A~~~~~~m~~ 224 (703)
..+|+... ..+...|...+.-+. .+|+.+.+..+|++...
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 45555422 134566776665443 23556677777777765
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.71 E-value=6e-07 Score=86.30 Aligned_cols=181 Identities=12% Similarity=0.031 Sum_probs=119.4
Q ss_pred hHHHHHHHhhHHhcCCHHHHHHHhhhcCc--CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH----HHH
Q 005305 367 IVANSALVDFYSKWGRIEDARHVFDKMLC--KN----VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH----VTF 436 (703)
Q Consensus 367 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~ 436 (703)
...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|+++.+. .|+. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 34555666778888888888888888753 32 245777778888888888888888888874 3432 133
Q ss_pred HHHHHHHHc------------------cCCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 005305 437 LAVLSACSR------------------SGLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLLDEAFALIRGAPF 497 (703)
Q Consensus 437 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 497 (703)
..+..++.. .|+.++|...|+.+.+.+ |+ ...+.+.. +.+.+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~----~l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATK----RLVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHH----HHHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHH----HHHHHHHHH--------
Confidence 333344432 356666666666665522 22 11111111 100000000
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 005305 498 KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL---SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567 (703)
Q Consensus 498 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 567 (703)
......+...+...|+++.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112455677889999999999999999999875 56889999999999999999999999876643
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.70 E-value=9.7e-07 Score=87.56 Aligned_cols=238 Identities=9% Similarity=-0.010 Sum_probs=155.4
Q ss_pred hCCCHHHHHHHHhhcCCCCccc-HHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHH
Q 005305 278 KCGSIEDAQGVFDEMSEKTTVG-WNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHA 356 (703)
Q Consensus 278 ~~g~~~~A~~~f~~m~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~ 356 (703)
-.|.+..++.-...+...+... ---+.++|...|++.... .-.|....+..+.. |...+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~-~~~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQ-FLDTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHH-HHTTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHH-Hhccc----HHHHHH
Confidence 3577777776555554322222 222346777777765321 12333323332222 22222 455566
Q ss_pred HHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc-----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc
Q 005305 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC-----KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP 431 (703)
Q Consensus 357 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 431 (703)
..+..+ .++......+..+|...|++++|.+++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+. .|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence 665544 34445556788888999999999999988743 24556777888999999999999999999874 66
Q ss_pred -----CHHHHHHHHHHH--HccC--CHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC-----
Q 005305 432 -----NHVTFLAVLSAC--SRSG--LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF----- 497 (703)
Q Consensus 432 -----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----- 497 (703)
+..+...+..++ ...| +.++|..+|+++... .|+......+..++.+.|++++|.+.++.+..
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 366666676663 3334 899999999998663 34423333444478899999999999875321
Q ss_pred ------CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch
Q 005305 498 ------KT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 498 ------~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 537 (703)
.| |+.+...++......|+ .|.+..+++.+..|+++..
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 14 45566567666667776 7889999999999998643
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.70 E-value=3.3e-07 Score=79.17 Aligned_cols=124 Identities=21% Similarity=0.229 Sum_probs=101.4
Q ss_pred HHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 005305 369 ANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445 (703)
Q Consensus 369 ~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 445 (703)
.+..+...|...|++++|...|+++. ..+...|..+...+...|++++|+..|+++...+ ..+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 56788899999999999999999874 3467788889999999999999999999998863 2355677888888999
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC
Q 005305 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 495 (703)
.|++++|.++++.+.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 99999999999988763 2345667777778888888888888777653
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.68 E-value=6.9e-08 Score=109.28 Aligned_cols=168 Identities=8% Similarity=-0.075 Sum_probs=107.0
Q ss_pred HhcCCHHHHHHHhhhcC-----------cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHc
Q 005305 378 SKWGRIEDARHVFDKML-----------CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSR 445 (703)
Q Consensus 378 ~k~g~~~~A~~~f~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~ 445 (703)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+. .| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence 45666666666666654 234456666666777777777777777776663 34 33566666666777
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHH
Q 005305 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFA 523 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~ 523 (703)
.|++++|...|++..+. -+.+...|..+...|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777777776652 12245566667777777777777 6666653 2233 455677777777777777777777
Q ss_pred HHHHhCCCCCCcchHHHHHHHHHhCCC
Q 005305 524 AEKLYGMEPEKLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 524 ~~~~~~~~p~~~~~~~~l~~~y~~~g~ 550 (703)
++++++++|++..+|..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 777777777777777777777766554
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.66 E-value=4.7e-07 Score=90.67 Aligned_cols=175 Identities=10% Similarity=-0.054 Sum_probs=134.5
Q ss_pred HHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 383 IEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 383 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
.+.....+......+...+..+...+.+.|++++|+..|++..+. .|+ ...+..+...+...|++++|...++.+.+
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 344444555555455566777778888899999999999998875 554 46777888889999999999999988865
Q ss_pred hcCCCCchHHHHHHH-HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC--cc
Q 005305 462 DHKIKPRAMHYACMI-ELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK--LS 536 (703)
Q Consensus 462 ~~~~~p~~~~~~~li-~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--~~ 536 (703)
..|+........ ..+.+.|+.++|.+.+++. ...| +...+..+...+...|++++|...++++++.+|++ ..
T Consensus 180 ---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 ---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp ---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred ---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 235544333322 2356777888888887763 2334 57788999999999999999999999999999987 78
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 537 NYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 537 ~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
.+..|+.+|...|+.++|...+++..
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 89999999999999999998887654
No 100
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.63 E-value=1.6e-06 Score=82.34 Aligned_cols=162 Identities=7% Similarity=-0.054 Sum_probs=116.7
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccC----CHHHHHHHHHHhHhhcCCCCchHH
Q 005305 396 KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG----LSERGWEIFQSMSRDHKIKPRAMH 471 (703)
Q Consensus 396 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~ 471 (703)
.++.++..+...|...+++++|+..|++..+.| +...+..+...|.. + +.++|.++|+...+ . .+...
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHH
Confidence 455666666666666777777777777776654 34455555555555 5 77788887777765 2 34556
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHhCCC-CCC---HHHHHHHHHHHHH----cCChhHHHHHHHHHhCCCCCCcchHH
Q 005305 472 YACMIELLGR----EGLLDEAFALIRGAPF-KTT---KNMWAALLTACRV----NGNLELGKFAAEKLYGMEPEKLSNYV 539 (703)
Q Consensus 472 ~~~li~~~~~----~g~~~~A~~~~~~m~~-~p~---~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~ 539 (703)
+..|..+|.. .+++++|.+.|++... .|. +..+..|...+.. .++.++|...++++.+. |.++..+.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 6677777766 6788888888877433 332 6677778778877 77899999999999887 55677899
Q ss_pred HHHHHHHhC-C-----ChHHHHHHHHHHHhCCC
Q 005305 540 VLLNIYNSS-G-----KLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 540 ~l~~~y~~~-g-----~~~~A~~~~~~m~~~~~ 566 (703)
.|+.+|... | ++++|.+.+++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999765 3 89999999999887663
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.58 E-value=1.1e-06 Score=99.26 Aligned_cols=190 Identities=12% Similarity=0.003 Sum_probs=147.4
Q ss_pred hccCCHHHHHHHHHHHH--------HcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhc
Q 005305 343 TRLASLEHAKQAHAGLV--------RHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNH 411 (703)
Q Consensus 343 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~ 411 (703)
...+++++|.+.++.++ +.. +.+...+..+...|.+.|++++|...|++... .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67889999999999888 432 34667888899999999999999999998853 4677899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHH
Q 005305 412 GRGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFA 490 (703)
Q Consensus 412 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 490 (703)
|++++|+..|++..+. .|+. ..+..+..++.+.|++++ .+.|+.+.+. -+.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999984 5644 778888899999999999 9999998872 23456788999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHHcCC-----hhHHHHHHHHHhCCCCCCcchH
Q 005305 491 LIRGA-PFKTT-KNMWAALLTACRVNGN-----LELGKFAAEKLYGMEPEKLSNY 538 (703)
Q Consensus 491 ~~~~m-~~~p~-~~~~~~ll~a~~~~g~-----~~~a~~~~~~~~~~~p~~~~~~ 538 (703)
.|++. ...|+ ...|..+..++...++ .+...++.+.+..+.++++..+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 99985 45676 4577777777766554 3444555555556655554433
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.57 E-value=1.7e-06 Score=82.00 Aligned_cols=126 Identities=10% Similarity=0.005 Sum_probs=94.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhc
Q 005305 404 LIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482 (703)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 482 (703)
+...|.+.|++++|+..|++.++. .| +...+..+..++...|++++|...|+.+.+. -+.+...+..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 788889999999999999999885 45 4577888888899999999999999998872 234567788888887665
Q ss_pred CC--hHHHHHHHHhCCCCCCHH--HHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC
Q 005305 483 GL--LDEAFALIRGAPFKTTKN--MWAALLTACRVNGNLELGKFAAEKLYGMEPEK 534 (703)
Q Consensus 483 g~--~~~A~~~~~~m~~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~ 534 (703)
|. .+++...++... .|+.. .|..+..++...|++++|...+++++++.|++
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 445566666543 34433 44445566677899999999999999999973
No 103
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.56 E-value=5.7e-07 Score=99.71 Aligned_cols=159 Identities=11% Similarity=-0.002 Sum_probs=123.5
Q ss_pred cCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHH
Q 005305 380 WGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEI 455 (703)
Q Consensus 380 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 455 (703)
.|++++|.+.|++... .+...|..+...|...|++++|++.|++..+. .|+ ..++..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998853 35678999999999999999999999999884 554 57888888999999999999999
Q ss_pred HHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---CChhHHHHHHHHHhCC
Q 005305 456 FQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVN---GNLELGKFAAEKLYGM 530 (703)
Q Consensus 456 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~~ 530 (703)
+++..+. -+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999873 2445778999999999999999999999874 2334 567888999999999 9999999999999999
Q ss_pred CCCCcchHHHHH
Q 005305 531 EPEKLSNYVVLL 542 (703)
Q Consensus 531 ~p~~~~~~~~l~ 542 (703)
+|++...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999888887776
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.54 E-value=1.1e-07 Score=85.02 Aligned_cols=120 Identities=10% Similarity=-0.009 Sum_probs=99.2
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCc-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCCh
Q 005305 441 SACSRSGLSERGWEIFQSMSRDHKIKPR-AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNL 517 (703)
Q Consensus 441 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~ 517 (703)
..+...|++++|...+..... ..|+ ...+..+...|.+.|++++|.+.|++. ...| +..+|..+...+...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 345566889999999887754 2333 445667899999999999999999874 3445 677999999999999999
Q ss_pred hHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHH-HHHHHh
Q 005305 518 ELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEV-IRTLRR 563 (703)
Q Consensus 518 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~-~~~m~~ 563 (703)
++|...++++++++|+++.+|..++.+|.+.|++++|.+. +++..+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999887765 476654
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.54 E-value=7.7e-07 Score=81.77 Aligned_cols=75 Identities=9% Similarity=-0.018 Sum_probs=59.4
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC--cchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 488 AFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK--LSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 488 A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|...+++..
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44455442 2234 56788888888899999999999999999999874 4588999999999999999999888764
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.53 E-value=2.4e-06 Score=86.44 Aligned_cols=220 Identities=13% Similarity=0.041 Sum_probs=153.5
Q ss_pred cCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHH
Q 005305 310 HGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHV 389 (703)
Q Consensus 310 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 389 (703)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 567889999988876531 111 0 11146677776666554 4567788899998888
Q ss_pred hhhcCc-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCcC--HHHHHHHHHHHHccCCHHHHHHH
Q 005305 390 FDKMLC-----KN----VISWNALIAGYGNHGRGEEAVELFEQMLLNG---MRPN--HVTFLAVLSACSRSGLSERGWEI 455 (703)
Q Consensus 390 f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 455 (703)
|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 887632 11 3478888889999999999999998876521 1222 2567778888888 999999999
Q ss_pred HHHhHhhcCCCC----chHHHHHHHHHHHhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHHcCChhHHHHH
Q 005305 456 FQSMSRDHKIKP----RAMHYACMIELLGREGLLDEAFALIRGAP-F---KTT----KNMWAALLTACRVNGNLELGKFA 523 (703)
Q Consensus 456 ~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~---~p~----~~~~~~ll~a~~~~g~~~~a~~~ 523 (703)
|+...+...-.. ....+..+...|.+.|++++|++.|++.. . .++ ...+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998865321111 14578888999999999999999998642 1 122 22566666777788999999999
Q ss_pred HHHHhCCCCCCcch-----HHHHHHHHHhCCChHHHHHH
Q 005305 524 AEKLYGMEPEKLSN-----YVVLLNIYNSSGKLKEAAEV 557 (703)
Q Consensus 524 ~~~~~~~~p~~~~~-----~~~l~~~y~~~g~~~~A~~~ 557 (703)
+++.+ +.|+.... ...++..| ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 99975433 34455555 56777766663
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.51 E-value=1.6e-06 Score=79.70 Aligned_cols=156 Identities=12% Similarity=0.027 Sum_probs=103.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHH-Hh
Q 005305 167 MRNRVLLMHVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRA-SA 242 (703)
Q Consensus 167 ~~~~Li~~y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~ 242 (703)
....+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|+...... |+.......... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344555666677777777777777664 345667777777777777777777777665432 233222111111 11
Q ss_pred cCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCC-----cccHHHHHHHHHHcCCcHHHH
Q 005305 243 GLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKT-----TVGWNTIIAGYALHGYSEEAL 317 (703)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~~g~~~~A~ 317 (703)
..+....+...+..+++.. +.+...+..+...|.+.|++++|...|+++.+.+ ...|..+...|...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 1122234567777777664 5567888888888999999999999888875432 347888888888899999998
Q ss_pred HHHHHHHH
Q 005305 318 DLYYEMRD 325 (703)
Q Consensus 318 ~l~~~m~~ 325 (703)
..|++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877543
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.51 E-value=1.7e-05 Score=79.27 Aligned_cols=214 Identities=13% Similarity=0.060 Sum_probs=99.1
Q ss_pred CcHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCchHHHHHHHhhH----Hhc---C
Q 005305 312 YSEEALDLYYEMRDSGVKMDHFT-FSMIIRICTRLA--SLEHAKQAHAGLVRHGFGLDIVANSALVDFY----SKW---G 381 (703)
Q Consensus 312 ~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y----~k~---g 381 (703)
..++|++++.++... .|+..| ++.--..+...+ .++++...+..++....+ +..+|+.--..+ .+. +
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence 345677777666654 344333 333333444444 555666655555554322 333333322222 222 4
Q ss_pred CHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCC------HH
Q 005305 382 RIEDARHVFDKML---CKNVISWNALIAGYGNHGRGE--EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL------SE 450 (703)
Q Consensus 382 ~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~ 450 (703)
+++++..+++.+. .+|..+|+.-.-.+.+.|.++ ++++.++++++.... |...|+.-.....+.+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 4555555555442 233344444444444444444 555555555543222 33344433333333333 34
Q ss_pred HHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHHHhC
Q 005305 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLE-LGKFAAEKLYG 529 (703)
Q Consensus 451 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~-~a~~~~~~~~~ 529 (703)
++.++++.+.. --+- |...|.-+...+...|... .....+.++++
T Consensus 204 eEl~~~~~aI~--~~p~--------------------------------n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~ 249 (306)
T 3dra_A 204 EELNYVKDKIV--KCPQ--------------------------------NPSTWNYLLGIHERFDRSITQLEEFSLQFVD 249 (306)
T ss_dssp HHHHHHHHHHH--HCSS--------------------------------CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEE
T ss_pred HHHHHHHHHHH--hCCC--------------------------------CccHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 44444443333 1122 4445555555554444422 23334444444
Q ss_pred CC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 530 ME---PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 530 ~~---p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
++ |.++.++..++++|.+.|+.++|.++++.+.+
T Consensus 250 ~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 250 LEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 33 55555666666666666666666666666553
No 109
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.47 E-value=5.1e-07 Score=80.40 Aligned_cols=97 Identities=10% Similarity=0.031 Sum_probs=84.2
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 468 RAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...+++++.++|+++..|..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3556677788888999999999998874 2234 6778889999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 005305 546 NSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 546 ~~~g~~~~A~~~~~~m~~~ 564 (703)
...|++++|.+.+++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988754
No 110
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.46 E-value=2.4e-06 Score=86.42 Aligned_cols=90 Identities=8% Similarity=-0.068 Sum_probs=42.5
Q ss_pred HHHHHHhhHHhcCCHHHHHHHhhhcCcC---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcCH-H
Q 005305 369 ANSALVDFYSKWGRIEDARHVFDKMLCK---------NVISWNALIAGYGNHGRGEEAVELFEQMLLN----GMRPNH-V 434 (703)
Q Consensus 369 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~ 434 (703)
+++.+...|.+ |++++|...|++...- ...+++.+...|.+.|++++|+..|++..+. +..++. .
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 34444555555 5555555555544210 0234555555566666666666666555441 111111 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHh
Q 005305 435 TFLAVLSACSRSGLSERGWEIFQSM 459 (703)
Q Consensus 435 t~~~ll~a~~~~g~~~~a~~~~~~m 459 (703)
++..+..++...|++++|...|+..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333444444445555555555544
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.46 E-value=1.7e-06 Score=95.78 Aligned_cols=146 Identities=20% Similarity=0.068 Sum_probs=104.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHH
Q 005305 345 LASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELF 421 (703)
Q Consensus 345 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 421 (703)
.|++++|...++.+++... .+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4678888888888877532 3577888889999999999999999988743 35668888888999999999999999
Q ss_pred HHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhc---CChHHHHHHHHhC
Q 005305 422 EQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE---GLLDEAFALIRGA 495 (703)
Q Consensus 422 ~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 495 (703)
++..+. .| +...+..+..++...|++++|.+.|+...+. .+.+...+..+...+... |+.++|.+.+++.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 998875 44 4577888888899999999999999988773 234567788888888888 9999999888764
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.46 E-value=8.9e-07 Score=78.92 Aligned_cols=101 Identities=8% Similarity=-0.012 Sum_probs=86.7
Q ss_pred CCCc-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHH
Q 005305 465 IKPR-AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541 (703)
Q Consensus 465 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 541 (703)
+.|+ ...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..|..+
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 3443 456777788888999999999999874 3344 677899999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHhCC
Q 005305 542 LNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 542 ~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
+.+|.+.|++++|.+.+++..+..
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999987643
No 113
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.46 E-value=6.9e-05 Score=74.89 Aligned_cols=222 Identities=10% Similarity=-0.021 Sum_probs=147.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHhhcCCC---CcccHHHHHHHHHHcC--CcHHHHHHHHHHHHCCCCCCHhhHHHHHHHH--
Q 005305 270 CALIDMYSKCGSIEDAQGVFDEMSEK---TTVGWNTIIAGYALHG--YSEEALDLYYEMRDSGVKMDHFTFSMIIRIC-- 342 (703)
Q Consensus 270 ~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~-- 342 (703)
..+.....+....++|++.++.+..- +...|+.--..+...| +++++++.+..+...+.+ +...++.--..+
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHH
Confidence 33333444445557999999988653 4456888777888888 999999999999886422 333444333333
Q ss_pred --hcc---CCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHH--HHHHHhhhcCc---CChhhHHHHHHHHHhcC
Q 005305 343 --TRL---ASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIE--DARHVFDKMLC---KNVISWNALIAGYGNHG 412 (703)
Q Consensus 343 --~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~--~A~~~f~~m~~---~~~~~~~~li~~~~~~g 412 (703)
... ++++++..++..+++... .+..+|+--.-.+.+.|.++ ++.+.++++.+ .|...|+.-...+...|
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 444 789999999999998753 37788888777778888888 99999998854 56678887777777777
Q ss_pred C------HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCH-HHHHHHHHHhHhhc-CCCCchHHHHHHHHHHHhcCC
Q 005305 413 R------GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS-ERGWEIFQSMSRDH-KIKPRAMHYACMIELLGREGL 484 (703)
Q Consensus 413 ~------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~~~~-~~~p~~~~~~~li~~~~~~g~ 484 (703)
. ++++++.+++++...+. |...|+.+-..+.+.|.. +....+...+.+.. .-..+...+..+++.|.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 6 89999999999986433 567777777777666653 23344444443310 011233444455555555555
Q ss_pred hHHHHHHHHh
Q 005305 485 LDEAFALIRG 494 (703)
Q Consensus 485 ~~~A~~~~~~ 494 (703)
.++|.+.++.
T Consensus 274 ~~~A~~~~~~ 283 (306)
T 3dra_A 274 YNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.45 E-value=2.6e-06 Score=81.80 Aligned_cols=185 Identities=11% Similarity=-0.034 Sum_probs=130.1
Q ss_pred HhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC--chHHHHHHHhhHHhcCCHHHHHHHhhhcCc--CCh----hhHHH
Q 005305 332 HFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGL--DIVANSALVDFYSKWGRIEDARHVFDKMLC--KNV----ISWNA 403 (703)
Q Consensus 332 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~~~----~~~~~ 403 (703)
...+-.....+...|++++|...++.+++..... ....+..+...|.+.|++++|...|++... |+. .+|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 3445556677888999999999999999865432 245778889999999999999999999853 322 14444
Q ss_pred HHHHHHh------------------cCCHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHccCCHHHHHHHHHHhHhhcC
Q 005305 404 LIAGYGN------------------HGRGEEAVELFEQMLLNGMRPNHV-TFLAVLSACSRSGLSERGWEIFQSMSRDHK 464 (703)
Q Consensus 404 li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 464 (703)
+...+.. .|+.++|+..|+++++. .|+.. ...... + ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~----~------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK----R------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH----H------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH----H------HHHHHHHHH----
Confidence 5555543 57899999999999984 56552 221111 0 001111111
Q ss_pred CCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch
Q 005305 465 IKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 465 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 537 (703)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++...|+.++|...++.+....|++..+
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 12235677888999999999999874 22343 2468888899999999999999999999888887553
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.44 E-value=5.6e-06 Score=82.75 Aligned_cols=160 Identities=8% Similarity=-0.005 Sum_probs=92.6
Q ss_pred CCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC--CCcccHHHH-H
Q 005305 127 DVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE--RNLVSCNMI-I 203 (703)
Q Consensus 127 ~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~d~~~~~~l-i 203 (703)
+.+...+..+...+...|++++|.+.++.+++.. +.+...+..|...|.+.|++++|...|++... |+...+... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3344556666667777888888888888887764 44556777777888888888888888887765 433222211 1
Q ss_pred HHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHH
Q 005305 204 AGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIE 283 (703)
Q Consensus 204 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 283 (703)
..+.+.++.++|+..|++.... . +.+...+..+...|...|+++
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~-----------------------------------~-P~~~~~~~~la~~l~~~g~~~ 236 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAE-----------------------------------N-PEDAALATQLALQLHQVGRNE 236 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH-----------------------------------C-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhcccCccHHHHHHHHhc-----------------------------------C-CccHHHHHHHHHHHHHcccHH
Confidence 2244455555666666555443 2 334444555555555555555
Q ss_pred HHHHHHhhcCC--C---CcccHHHHHHHHHHcCCcHHHHHHHHHH
Q 005305 284 DAQGVFDEMSE--K---TTVGWNTIIAGYALHGYSEEALDLYYEM 323 (703)
Q Consensus 284 ~A~~~f~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m 323 (703)
+|...|.++.. | +...+..+...|...|+.++|...|++.
T Consensus 237 ~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 237 EALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 55555554432 1 1334555555555555555555555543
No 116
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.43 E-value=4.6e-05 Score=82.25 Aligned_cols=342 Identities=13% Similarity=0.068 Sum_probs=180.5
Q ss_pred ccccccCCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCC-hhHHHHHHHHHHHc-CCCCCChhhHHHHHHHHh
Q 005305 65 GLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKR-YREALELFEILEFE-GGFDVGSSTYDALISACI 141 (703)
Q Consensus 65 li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~-~~~A~~l~~~m~~~-~~~~p~~~t~~~ll~~~~ 141 (703)
.+..+.. ++.+.+ +.+|......-|++-.|..-+. ..+.+. .+....+|+..... |.-+++...|...+..+.
T Consensus 21 ~l~~~P~-~~~e~~---~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~ 96 (493)
T 2uy1_A 21 ARRLYMS-KDYRSL---ESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEG 96 (493)
T ss_dssp HHHHHHT-TCHHHH---HHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTS
T ss_pred HHHHCCC-CCHHHH---HHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHH
Confidence 3333333 678888 9999877766678889999998 555553 45677788887764 311345667777776554
Q ss_pred c----cCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhC-----------------CChHHHHHHHccCCC----CCc
Q 005305 142 G----LRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRC-----------------GMMIDARRLFDEMPE----RNL 196 (703)
Q Consensus 142 ~----~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~-----------------g~~~~A~~~f~~m~~----~d~ 196 (703)
. .++++.++++++.+++.. +.. ...+-..|... +.+..|+.+++.+.. .+.
T Consensus 97 ~~~~~~~~~~~vR~iy~rAL~~P--~~~--~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 97 KIEDEQTRIEKIRNGYMRALQTP--MGS--LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp SCSSHHHHHHHHHHHHHHHHTSC--CTT--HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred hchhhhHHHHHHHHHHHHHHhCh--hhh--HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 2 356788999999998742 211 12222222211 122223333332221 133
Q ss_pred ccHHHHHHHHHhCCC-------hhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHH
Q 005305 197 VSCNMIIAGMIDSGD-------YLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVS 269 (703)
Q Consensus 197 ~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 269 (703)
..|...+.--..++. .+.+..+|+++.... +.+...|...+.-+...|+.+.|..+++.+++. +.+...+
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence 356555543222211 234556777776543 224555666666666777888888888887777 4444444
Q ss_pred HHHHHHHHhCCCHHHH-HHHHhhcC--C----------CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHH
Q 005305 270 CALIDMYSKCGSIEDA-QGVFDEMS--E----------KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS 336 (703)
Q Consensus 270 ~~Li~~y~~~g~~~~A-~~~f~~m~--~----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 336 (703)
.. |+...+.++. ..+.+... + .....|...+....+.+..+.|..+|.+. .. ...+...|.
T Consensus 250 ~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i 323 (493)
T 2uy1_A 250 LY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFI 323 (493)
T ss_dssp HH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHH
T ss_pred HH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHH
Confidence 32 2221111111 11111110 0 01123555555555566677777777766 21 112222232
Q ss_pred HHHHHHh-ccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHH
Q 005305 337 MIIRICT-RLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGE 415 (703)
Q Consensus 337 ~ll~a~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 415 (703)
.....-. ..++.+.|+.+++..++.. +.++..+...++...+.|+.+.|+.+|+.+. +....|...+.-=...|+.+
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~ 401 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSME 401 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHH
Confidence 1111111 1235677777777776643 2234445556666666777777777777663 24555666665555566666
Q ss_pred HHHHHHHHHH
Q 005305 416 EAVELFEQML 425 (703)
Q Consensus 416 ~A~~l~~~m~ 425 (703)
.+..+++++.
T Consensus 402 ~~r~v~~~~~ 411 (493)
T 2uy1_A 402 LFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666555
No 117
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.43 E-value=6e-06 Score=78.13 Aligned_cols=135 Identities=11% Similarity=-0.017 Sum_probs=80.3
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHc
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSR 445 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 445 (703)
.+.+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++.++. .|+ ..++..+..++..
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 3446677777777777777777763 235567777777777778888888888777774 443 4566666666555
Q ss_pred cCC--HHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHHHHHHHHH
Q 005305 446 SGL--SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG-APFKTTKNMWAALLT 509 (703)
Q Consensus 446 ~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~p~~~~~~~ll~ 509 (703)
.|. .+.+...+..... ..|....+..+...+...|++++|...|++ +...|+......+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 135 TAEQEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 443 2334444443321 122222333345555667788888888776 455677655544433
No 118
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.42 E-value=1.3e-06 Score=75.26 Aligned_cols=109 Identities=8% Similarity=-0.044 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTAC 511 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 511 (703)
..+......+.+.|++++|.+.|+...+. -+.+...|..+...|.+.|++++|++.+++. ...| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 34445555566666666666666655541 2234555555666666666666666665542 2222 345666666666
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHHHH
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 544 (703)
...|++++|...++++++++|++..++..|.++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 666777777777777777777666665555443
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.42 E-value=4.7e-06 Score=78.87 Aligned_cols=123 Identities=8% Similarity=-0.071 Sum_probs=89.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcC
Q 005305 438 AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNG 515 (703)
Q Consensus 438 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g 515 (703)
.+...+...|++++|...|+... .|+...+..+...|.+.|++++|.+.+++. .. +.+...|..+..++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 34445556666666666665442 345666666666677777777777666653 12 234567777777888888
Q ss_pred ChhHHHHHHHHHhCCCCCCc----------------chHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 516 NLELGKFAAEKLYGMEPEKL----------------SNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 516 ~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
++++|...++++++..|++. ..+..++.+|.+.|++++|.+.+++..+..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 88888888888888777766 889999999999999999999999988654
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.41 E-value=8.8e-06 Score=76.91 Aligned_cols=145 Identities=8% Similarity=-0.088 Sum_probs=96.5
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCH
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLS 449 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 449 (703)
+..+...|...|++++|...|++...++...|..+...|...|++++|+..|++..+.. ..+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 44556667777888888888887777777777777778888888888888887777642 22446666677777777777
Q ss_pred HHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHh
Q 005305 450 ERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTT-KNMWAALLTACRVNGNLELGKFAAEKLY 528 (703)
Q Consensus 450 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 528 (703)
++|...|+...+...-.+... +...| +...|+ ...|..+..++...|++++|...+++++
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 777777777765211111000 00000 012232 3567778888888888888888888888
Q ss_pred CCCCCC
Q 005305 529 GMEPEK 534 (703)
Q Consensus 529 ~~~p~~ 534 (703)
++.|++
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 888875
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.40 E-value=2.1e-05 Score=78.73 Aligned_cols=159 Identities=9% Similarity=-0.040 Sum_probs=112.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCcCHH----HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc----hHHHHH
Q 005305 404 LIAGYGNHGRGEEAVELFEQMLLNG-MRPNHV----TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR----AMHYAC 474 (703)
Q Consensus 404 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 474 (703)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...|+.+.+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 123321 2234555666677888888888888762222222 235788
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC------cchHH
Q 005305 475 MIELLGREGLLDEAFALIRGAP-------F-KTT-KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK------LSNYV 539 (703)
Q Consensus 475 li~~~~~~g~~~~A~~~~~~m~-------~-~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 539 (703)
+...|...|++++|.+.+++.- . .+. ..++..+...|...|++++|...+++++++.+.. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888888888888888876632 1 112 2367788888999999999999988887654332 56799
Q ss_pred HHHHHHHhCCC-hHHHHHHHHHHH
Q 005305 540 VLLNIYNSSGK-LKEAAEVIRTLR 562 (703)
Q Consensus 540 ~l~~~y~~~g~-~~~A~~~~~~m~ 562 (703)
.++.+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999998875
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.39 E-value=1.1e-05 Score=80.72 Aligned_cols=164 Identities=7% Similarity=-0.062 Sum_probs=114.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-H----HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCC--CCc--h
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-H----VTFLAVLSACSRSGLSERGWEIFQSMSRDHKI--KPR--A 469 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~--~ 469 (703)
..+...+..+...|++++|++.+++..+.....+ . ..+..+...+...|++++|...++...+...- .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3455566777888888888888887776422211 1 12333445567778888888888877642111 111 4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC------C
Q 005305 470 MHYACMIELLGREGLLDEAFALIRGAP----FKTT-----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPE------K 534 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~~m~----~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~------~ 534 (703)
..|+.+...|...|++++|.+.+++.. ..|+ ..++..+...|...|++++|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 477888888888898888888887632 1222 247788888889999999999998888755432 1
Q ss_pred cchHHHHHHHHHhCCChHHH-HHHHHHHH
Q 005305 535 LSNYVVLLNIYNSSGKLKEA-AEVIRTLR 562 (703)
Q Consensus 535 ~~~~~~l~~~y~~~g~~~~A-~~~~~~m~ 562 (703)
..+|..++.+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 46788999999999999999 77777654
No 123
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.37 E-value=8.8e-06 Score=77.20 Aligned_cols=125 Identities=13% Similarity=0.040 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC-CcccHHHHHHHHHHcC----CcHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 005305 265 NVFVSCALIDMYSKCGSIEDAQGVFDEMSEK-TTVGWNTIIAGYALHG----YSEEALDLYYEMRDSGVKMDHFTFSMII 339 (703)
Q Consensus 265 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~t~~~ll 339 (703)
++..+..|..+|...+++++|.+.|++..+. ++.++..+...|.. + ++++|+..|++..+.| +...+..+-
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4444555555555555555555555554332 33344444444444 3 4555555555554433 223333333
Q ss_pred HHHhc----cCCHHHHHHHHHHHHHcCCC-CchHHHHHHHhhHHh----cCCHHHHHHHhhhc
Q 005305 340 RICTR----LASLEHAKQAHAGLVRHGFG-LDIVANSALVDFYSK----WGRIEDARHVFDKM 393 (703)
Q Consensus 340 ~a~~~----~~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m 393 (703)
..+.. .++.++|...+....+.|.. .++..+..|..+|.. .++.++|...|++.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 33333 34444444444444443321 013344444444444 34444444444443
No 124
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.37 E-value=6.7e-07 Score=89.27 Aligned_cols=190 Identities=8% Similarity=-0.056 Sum_probs=114.0
Q ss_pred hHHHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHH
Q 005305 367 IVANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSA 442 (703)
Q Consensus 367 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 442 (703)
...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..+++..+. .|+ ...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3455556666667777777777776653 235566666777777777777777777776653 443 3566666677
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCch-HHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 005305 443 CSRSGLSERGWEIFQSMSRDHKIKPRA-MHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGK 521 (703)
Q Consensus 443 ~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~ 521 (703)
+...|++++|...|+...+.. |+. ..+...+....+.+....... .......++......+ ..+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 777777777777777665421 211 011111111111111111111 2222333344333333 222 368888999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhC-CChHHHHHHHHHHHhC
Q 005305 522 FAAEKLYGMEPEKLSNYVVLLNIYNSS-GKLKEAAEVIRTLRRK 564 (703)
Q Consensus 522 ~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~~~ 564 (703)
..++++++.+|++......+...+.+. +++++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998877777777777777 7899999999988653
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.34 E-value=4.8e-06 Score=73.29 Aligned_cols=96 Identities=11% Similarity=-0.058 Sum_probs=82.1
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...+++++.++|+++..|..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445566677788889999999888874 2234 67788889999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhC
Q 005305 547 SSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 547 ~~g~~~~A~~~~~~m~~~ 564 (703)
..|++++|.+.+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988753
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.32 E-value=5.8e-06 Score=70.07 Aligned_cols=113 Identities=17% Similarity=0.149 Sum_probs=67.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHH
Q 005305 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAP-F-KTTKNMWAALLTACR 512 (703)
Q Consensus 435 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~a~~ 512 (703)
++..+...+...|++++|.++|+.+.+. .+.+...+..+...+.+.|++++|...++++. . +.+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 3444444455555555555555555441 12234455555555566666666666555431 1 234556667777777
Q ss_pred HcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCC
Q 005305 513 VNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSG 549 (703)
Q Consensus 513 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 549 (703)
..|++++|...++++++..|+++..+..+..++.+.|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 7777777777777777777877777777777766543
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.31 E-value=3.8e-06 Score=72.31 Aligned_cols=100 Identities=8% Similarity=-0.000 Sum_probs=88.7
Q ss_pred CCCc-hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHH
Q 005305 465 IKPR-AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541 (703)
Q Consensus 465 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 541 (703)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 456777889999999999999999874 3344 678999999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHhC
Q 005305 542 LNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 542 ~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998753
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.31 E-value=6.7e-06 Score=74.01 Aligned_cols=125 Identities=10% Similarity=-0.020 Sum_probs=84.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHH
Q 005305 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRV 513 (703)
Q Consensus 436 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~ 513 (703)
+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. .. +.+...|..+...+..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 444444555556666666666555542 2234555666666666667777776666552 12 2345677778888888
Q ss_pred cCChhHHHHHHHHHhCCCCCCcchHHHH--HHHHHhCCChHHHHHHHHHHH
Q 005305 514 NGNLELGKFAAEKLYGMEPEKLSNYVVL--LNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 514 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~y~~~g~~~~A~~~~~~m~ 562 (703)
.|++++|...+++++++.|++...+..+ +..+.+.|++++|.+.+....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8899999999999998899887777444 444888899999999988764
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.30 E-value=4.5e-05 Score=76.35 Aligned_cols=122 Identities=11% Similarity=0.085 Sum_probs=68.5
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCC-Cc----hHHHHHHHhhHHhcCCHHHHHHHhhhcCc------C----ChhhHHHH
Q 005305 340 RICTRLASLEHAKQAHAGLVRHGFG-LD----IVANSALVDFYSKWGRIEDARHVFDKMLC------K----NVISWNAL 404 (703)
Q Consensus 340 ~a~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~Li~~y~k~g~~~~A~~~f~~m~~------~----~~~~~~~l 404 (703)
..+...++++.|...+..+++.... .+ ..+++.+...|...|++++|...|++... . ...+|..+
T Consensus 123 ~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nl 202 (293)
T 3u3w_A 123 AYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNH 202 (293)
T ss_dssp HHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred HHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 3344444555555555555542111 11 22456666666666666666666665531 1 12356666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc----CCCcC-HHHHHHHHHHHHccC-CHHHHHHHHHHhHh
Q 005305 405 IAGYGNHGRGEEAVELFEQMLLN----GMRPN-HVTFLAVLSACSRSG-LSERGWEIFQSMSR 461 (703)
Q Consensus 405 i~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g-~~~~a~~~~~~m~~ 461 (703)
...|...|++++|+..+++..+. +..+. ..++..+..++.+.| ..++|.+.++....
T Consensus 203 g~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 77777777777777777766542 22222 356666777777777 35777777776654
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.27 E-value=6.7e-06 Score=70.35 Aligned_cols=116 Identities=8% Similarity=-0.091 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTAC 511 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 511 (703)
..+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 44445555555666666666666665542 2234555666666666666777666666552 1222 456677777778
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCCh
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKL 551 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 551 (703)
...|++++|...++++++..|+++..+..++.++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888887765
No 131
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.25 E-value=8.2e-06 Score=70.18 Aligned_cols=115 Identities=7% Similarity=-0.057 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTAC 511 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~ 511 (703)
..+..+...+...|++++|...|+...+ ..+.+...+..+...|...|++++|.+.+++. .. +.+...|..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3344444444444445555544444433 11223444455555555555555555555442 11 22455666667777
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCC
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGK 550 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 550 (703)
...|++++|...++++++.+|++...+..+..+|.+.|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 777777777777777777778777777777777776653
No 132
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.21 E-value=3.4e-06 Score=82.51 Aligned_cols=135 Identities=16% Similarity=0.021 Sum_probs=89.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc--hHHHHHHHHHH
Q 005305 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR--AMHYACMIELL 479 (703)
Q Consensus 402 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~ 479 (703)
-.....+...|++++|.++|+.+... .|+......+...+.+.+++++++..|+...+ .. .|. ...+..+..++
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHHH
Confidence 34556677778888888888777653 45554444445567778888888888875543 11 121 23566677778
Q ss_pred HhcCChHHHHHHHHhCCCC---CC--HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHH
Q 005305 480 GREGLLDEAFALIRGAPFK---TT--KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541 (703)
Q Consensus 480 ~~~g~~~~A~~~~~~m~~~---p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 541 (703)
.+.|++++|++.|++.... |. ...+.....++...|+.++|...+++++..+|+ ..++..|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 8888888888888764211 32 235666777778888888888888888888887 5555444
No 133
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.20 E-value=6.3e-06 Score=84.46 Aligned_cols=94 Identities=9% Similarity=-0.014 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
...|..+...|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|++..++..+..+|.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 357778888888888999888888764 2333 67788899999999999999999999999999999999999999999
Q ss_pred hCCChHHH-HHHHHHHH
Q 005305 547 SSGKLKEA-AEVIRTLR 562 (703)
Q Consensus 547 ~~g~~~~A-~~~~~~m~ 562 (703)
+.|++++| .++++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 44666654
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.19 E-value=4.6e-06 Score=76.41 Aligned_cols=118 Identities=13% Similarity=0.126 Sum_probs=73.8
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHHcCCh--hHH
Q 005305 446 SGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFK-TTKNMWAALLTA-CRVNGNL--ELG 520 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~a-~~~~g~~--~~a 520 (703)
.|++++|...++...+. .+.+...|..+...|...|++++|.+.|++. ... .+...|..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 44555555555555442 1234455555666666666666666666543 112 245566666666 5667776 777
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 521 KFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
...++++++.+|+++..+..++.+|...|++++|.+.+++..+..
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 777888777788877788888888888888888888887776543
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.18 E-value=8.5e-06 Score=69.81 Aligned_cols=96 Identities=10% Similarity=-0.048 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666777788888888888888763 2233 57788888899999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHhC
Q 005305 547 SSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 547 ~~g~~~~A~~~~~~m~~~ 564 (703)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999988753
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.15 E-value=4e-05 Score=74.96 Aligned_cols=182 Identities=8% Similarity=-0.053 Sum_probs=134.4
Q ss_pred hcCCHHHHHHHhhhcCc---CChhhHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCcCH---------------
Q 005305 379 KWGRIEDARHVFDKMLC---KNVISWNAL-------IAGYGNHGRGEEAVELFEQMLLNGMRPNH--------------- 433 (703)
Q Consensus 379 k~g~~~~A~~~f~~m~~---~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------------- 433 (703)
..++.+.|.+.|.+... .....|+.+ ...+...++..+++..++.-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46888889999888853 345578777 4555555555555555554433 33322
Q ss_pred -------HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH----H
Q 005305 434 -------VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTK----N 502 (703)
Q Consensus 434 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~ 502 (703)
.....+...+...|++++|.+.|+.+.. ..|+......+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1223455677889999999999988865 2355446666777889999999999999876544433 3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCCC--CC-CcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGME--PE-KLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
.+..+..++...|++++|+..+++...-. |. .+.....++.++.+.|+.++|..+++++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67788889999999999999999998433 55 44578899999999999999999999998643
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.14 E-value=0.0001 Score=68.71 Aligned_cols=94 Identities=13% Similarity=-0.040 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCc--CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc----h
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQMLLN----GMRP--NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR----A 469 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 469 (703)
+++.+...|...|++++|+..|++..+. +-.| ....+..+...+...|++++|...++...+...-.++ .
T Consensus 68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 147 (203)
T 3gw4_A 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA 147 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence 4444455555555555555555554431 1011 1133444445555555555555555554321100011 1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHH
Q 005305 470 MHYACMIELLGREGLLDEAFALIR 493 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~ 493 (703)
..+..+...+.+.|++++|.+.++
T Consensus 148 ~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 148 CAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHH
Confidence 223444555555555555555544
No 138
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.14 E-value=1.2e-05 Score=66.71 Aligned_cols=99 Identities=13% Similarity=0.012 Sum_probs=80.7
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC--CcchHHHHHH
Q 005305 468 RAMHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE--KLSNYVVLLN 543 (703)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 543 (703)
+...+..+...+.+.|++++|...+++. .. +.+...|..+...+...|++++|...++++++..|+ +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3455666777788888888888888763 22 235677888888889999999999999999999999 8899999999
Q ss_pred HHHhC-CChHHHHHHHHHHHhCCC
Q 005305 544 IYNSS-GKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 544 ~y~~~-g~~~~A~~~~~~m~~~~~ 566 (703)
+|... |++++|.+.++...+...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998876553
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.13 E-value=1.7e-05 Score=74.06 Aligned_cols=46 Identities=11% Similarity=0.005 Sum_probs=21.1
Q ss_pred CCCHHHHHH---HHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005305 279 CGSIEDAQG---VFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324 (703)
Q Consensus 279 ~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 324 (703)
.|++++|.+ .+..-+......+..+...|...|++++|+..|++..
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 53 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQ 53 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 455555555 3333222223345555555555555555555555543
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.12 E-value=6.2e-05 Score=75.30 Aligned_cols=94 Identities=15% Similarity=0.019 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCcC-----HHHHHHHHHHHHccCCHHHHHHHHHHhHhhc---CCCC-ch
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQMLLN-GMRPN-----HVTFLAVLSACSRSGLSERGWEIFQSMSRDH---KIKP-RA 469 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~ 469 (703)
+|+.+...|...|++++|+..|++..+. ...|+ ..++..+...|...|++++|..+++...+.. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4455555555555555555555554411 00111 1345555555555566666655555544311 0001 13
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHH
Q 005305 470 MHYACMIELLGREGLLDEA-FALIR 493 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A-~~~~~ 493 (703)
..|..+...|.+.|+.++| ...++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4555566666666666666 44343
No 141
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.12 E-value=0.001 Score=67.14 Aligned_cols=223 Identities=9% Similarity=-0.008 Sum_probs=157.0
Q ss_pred HHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCCcchHHHHHHHH
Q 005305 98 CSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLR-SIREVKRVFSYMLSTGFEPDLYMRNRVLLMH 175 (703)
Q Consensus 98 ~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y 175 (703)
|+.+.. ....+..++|+++++.+.... +-+..+|+.--..+...+ +++++.+.++.+++.. +.+..+|+.--..+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 444444 556667789999999999875 445566777666677777 5999999999999865 55667888777777
Q ss_pred HhC-C-ChHHHHHHHccCCCC---CcccHHHHHHHHHhCCChh--------HHHHHHHHhHHcCCCCChhhHHHHHHHHh
Q 005305 176 VRC-G-MMIDARRLFDEMPER---NLVSCNMIIAGMIDSGDYL--------EAFLLFLDLWEEFSDCGSRTFATMIRASA 242 (703)
Q Consensus 176 ~~~-g-~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 242 (703)
.+. + +.+++++.++.+.+. |-.+|+--.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 766 6 889999999998874 5556665544444545555 899999999887544 6667777777777
Q ss_pred cCCC-------hHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCH--------------------HHHHHHHhhcCC-
Q 005305 243 GLEL-------ISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSI--------------------EDAQGVFDEMSE- 294 (703)
Q Consensus 243 ~~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~--------------------~~A~~~f~~m~~- 294 (703)
+.+. ++++.+....++... +.|...|+-+-..+.+.|+. ....++..++..
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred hccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 7765 577778888877775 67888888888777777653 334444444432
Q ss_pred --------CCcccHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 005305 295 --------KTTVGWNTIIAGYALHGYSEEALDLYYEMRD 325 (703)
Q Consensus 295 --------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 325 (703)
++...+..+...|...|+.++|.++++.+.+
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 2334566677777777888888888877754
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.11 E-value=9.3e-06 Score=73.36 Aligned_cols=96 Identities=14% Similarity=-0.024 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|...++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445566666677777777777777653 2233 55677777777777777777877777777777877777888888888
Q ss_pred hCCChHHHHHHHHHHHhC
Q 005305 547 SSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 547 ~~g~~~~A~~~~~~m~~~ 564 (703)
..|++++|.+.+++..+.
T Consensus 91 ~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHh
Confidence 888888888877777653
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.11 E-value=2e-06 Score=80.71 Aligned_cols=173 Identities=9% Similarity=-0.070 Sum_probs=102.3
Q ss_pred HHHHhhHHhcCCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccC
Q 005305 371 SALVDFYSKWGRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG 447 (703)
Q Consensus 371 ~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 447 (703)
+..+......|++++|.+.|+.-.. .....|..+...+...|++++|+..|++..+. .|+...+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~-------- 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ-------- 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------
Confidence 3444555566777888777765432 23456777777888888888888888888763 2221100000
Q ss_pred CHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHHcCChhHHHHHHH
Q 005305 448 LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFK-TTKNMWAALLTACRVNGNLELGKFAAE 525 (703)
Q Consensus 448 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~ 525 (703)
..+.-. .. .....|..+...|.+.|++++|...+++. ... .+...|..+..++...|++++|...++
T Consensus 78 ~~~~~~---~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDKK---KN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHH---HH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHH---HH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000000 00 01345666777778888888888887763 223 356788888889999999999999999
Q ss_pred HHhCCCCCCcchHHHHHHHHHhCCChHHHH-HHHHHHHhC
Q 005305 526 KLYGMEPEKLSNYVVLLNIYNSSGKLKEAA-EVIRTLRRK 564 (703)
Q Consensus 526 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~-~~~~~m~~~ 564 (703)
++++++|++...+..+..++...|+.+++. ..++.|-.+
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999888888777 555555433
No 144
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.09 E-value=2.2e-05 Score=68.05 Aligned_cols=98 Identities=11% Similarity=-0.062 Sum_probs=82.5
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHH
Q 005305 467 PRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544 (703)
Q Consensus 467 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 544 (703)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|+++.|...++++++++|+++..|..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 45667777888888888888888888763 2233 567888888889999999999999999999999999999999999
Q ss_pred HHhCCChHHHHHHHHHHHhC
Q 005305 545 YNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 545 y~~~g~~~~A~~~~~~m~~~ 564 (703)
|...|++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 145
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.09 E-value=8.8e-06 Score=69.37 Aligned_cols=95 Identities=13% Similarity=0.024 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhC
Q 005305 471 HYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 548 (703)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|+.++|+..++++++++|+++..+..++.+|.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999874 3344 6778888899999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 005305 549 GKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 549 g~~~~A~~~~~~m~~~~ 565 (703)
|++++|.+.+++..+..
T Consensus 99 g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887543
No 146
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.08 E-value=6e-05 Score=62.84 Aligned_cols=107 Identities=11% Similarity=0.000 Sum_probs=57.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHH
Q 005305 436 FLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRV 513 (703)
Q Consensus 436 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~ 513 (703)
+..+...+...|++++|...|+...+. .+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 333444444455555555555544431 1223444445555555555555555555442 1122 34556666666666
Q ss_pred cCChhHHHHHHHHHhCCCCCCcchHHHHHHH
Q 005305 514 NGNLELGKFAAEKLYGMEPEKLSNYVVLLNI 544 (703)
Q Consensus 514 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 544 (703)
.|++++|...++++++..|+++..+..+..+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 7777777777777777777766555555444
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.07 E-value=7.9e-06 Score=72.53 Aligned_cols=102 Identities=10% Similarity=-0.052 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTAC 511 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 511 (703)
..+..+...+...|++++|...|+...+. -+.+...|..+..+|.+.|++++|.+.|++. ...| +...|..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34444555566666666666666666542 2234555666666666667777776666653 2223 445666777777
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcch
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~ 537 (703)
...|++++|...+++++++.|+++..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 77777788888888887777776654
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.06 E-value=2.3e-05 Score=67.34 Aligned_cols=99 Identities=11% Similarity=0.034 Sum_probs=88.3
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHH
Q 005305 466 KPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLN 543 (703)
Q Consensus 466 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 543 (703)
+.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888999999999999999999874 3444 67789999999999999999999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHhC
Q 005305 544 IYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 544 ~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+|.+.|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999988754
No 149
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.05 E-value=8.5e-05 Score=66.56 Aligned_cols=91 Identities=10% Similarity=0.022 Sum_probs=42.7
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHcc
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 446 (703)
+..+...|...|++++|...|++.. ..+...|..+...|...|++++|+..|++..+.. ..+..++..+..++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 3344444445555555555554432 1234444445555555555555555555554431 11234444444445555
Q ss_pred CCHHHHHHHHHHhHh
Q 005305 447 GLSERGWEIFQSMSR 461 (703)
Q Consensus 447 g~~~~a~~~~~~m~~ 461 (703)
|++++|...|+.+.+
T Consensus 95 ~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 95 GKFRAALRDYETVVK 109 (166)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 555555555555444
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.05 E-value=3e-05 Score=64.77 Aligned_cols=98 Identities=11% Similarity=0.057 Sum_probs=86.6
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 468 RAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
....+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 4566778889999999999999999874 2233 6778899999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHhCC
Q 005305 546 NSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 546 ~~~g~~~~A~~~~~~m~~~~ 565 (703)
...|++++|.+.+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999987643
No 151
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.03 E-value=0.0018 Score=65.35 Aligned_cols=171 Identities=14% Similarity=0.054 Sum_probs=102.4
Q ss_pred HHcCCcHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHhccC-CHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhc-C-CH
Q 005305 308 ALHGYSEEALDLYYEMRDSGVKMDHF-TFSMIIRICTRLA-SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW-G-RI 383 (703)
Q Consensus 308 ~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~-g-~~ 383 (703)
...+..++|++++.++... .|+.. .++.--..+...+ .++++...+..+++...+ +..+|+.-...+.+. + ++
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence 3445556788888877765 34333 3444444444555 477777777777765433 556666655555554 5 67
Q ss_pred HHHHHHhhhcCcC---ChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCC----
Q 005305 384 EDARHVFDKMLCK---NVISWNALIAGYGNHGRGE--------EAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL---- 448 (703)
Q Consensus 384 ~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~---- 448 (703)
+++.++++.+... |..+|+--.-.+.+.|.++ ++++.++++++..+. |...|+.......+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 7788887777543 4456655444444444444 777777777775433 55666666666666554
Q ss_pred ---HHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCC
Q 005305 449 ---SERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGL 484 (703)
Q Consensus 449 ---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 484 (703)
++++.++++.+.. .-+-|...|+.+-..+.+.|+
T Consensus 221 ~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence 5666666666655 233455566666666665554
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.03 E-value=0.00012 Score=61.63 Aligned_cols=92 Identities=24% Similarity=0.303 Sum_probs=40.3
Q ss_pred HHHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHc
Q 005305 369 ANSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSR 445 (703)
Q Consensus 369 ~~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 445 (703)
.+..+...|.+.|++++|.+.|+++. ..+...|..+...+...|++++|+..|+++.+.. ..+..++..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 33444444444444444444444432 1233344444444444455555555554444421 1123344444444444
Q ss_pred cCCHHHHHHHHHHhHh
Q 005305 446 SGLSERGWEIFQSMSR 461 (703)
Q Consensus 446 ~g~~~~a~~~~~~m~~ 461 (703)
.|++++|...|+.+.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 4444444444444433
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=3.5e-05 Score=67.61 Aligned_cols=96 Identities=11% Similarity=-0.013 Sum_probs=63.2
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHH
Q 005305 468 RAMHYACMIELLGREGLLDEAFALIRGA-PFKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542 (703)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 542 (703)
+...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3455555666666666666666666652 33454 456666666667777777777777777777777666777777
Q ss_pred HHHHhCCChHHHHHHHHHHHh
Q 005305 543 NIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 543 ~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.+|...|++++|.+.+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777766654
No 154
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.01 E-value=3.7e-05 Score=70.23 Aligned_cols=127 Identities=9% Similarity=0.051 Sum_probs=89.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHH-HHhcCCh--
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL-LGREGLL-- 485 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~-- 485 (703)
...|++++|+..|++..+.. ..+...+..+...+...|++++|...|+.+.+. .+.+...+..+... |...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34567777877887777642 224467777777788888888888888877662 23355667777777 6678887
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchH
Q 005305 486 DEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538 (703)
Q Consensus 486 ~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 538 (703)
++|...+++. ...| +...|..+...+...|++++|...++++++..|+++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888888764 2233 466788888888999999999999999999999875543
No 155
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.00 E-value=2.1e-05 Score=84.69 Aligned_cols=116 Identities=9% Similarity=-0.038 Sum_probs=82.4
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHH
Q 005305 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELG 520 (703)
Q Consensus 443 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a 520 (703)
+.+.|++++|.+.|++..+. -+.+...|..+...|.+.|++++|++.+++. ...| +...|..+..++...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 44556666666666666552 2233566667777777777777777777653 2233 566788888888999999999
Q ss_pred HHHHHHHhCCCCCCcchHHHHHHH--HHhCCChHHHHHHHHH
Q 005305 521 KFAAEKLYGMEPEKLSNYVVLLNI--YNSSGKLKEAAEVIRT 560 (703)
Q Consensus 521 ~~~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~A~~~~~~ 560 (703)
...++++++++|++...+..+..+ +.+.|++++|.+.+++
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999998889888888 8889999999998874
No 156
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.00 E-value=3.2e-05 Score=68.67 Aligned_cols=95 Identities=12% Similarity=0.042 Sum_probs=65.4
Q ss_pred CcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHH
Q 005305 94 SAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVL 172 (703)
Q Consensus 94 ~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li 172 (703)
+...|..+-. +.+.|++++|+..|+...... |.+...|..+-.++...|++++|...++.+++.. +.++..+..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 4445666666 778888888888888877764 4566677777777777777777777777777764 34455666666
Q ss_pred HHHHhCCChHHHHHHHccC
Q 005305 173 LMHVRCGMMIDARRLFDEM 191 (703)
Q Consensus 173 ~~y~~~g~~~~A~~~f~~m 191 (703)
.+|.+.|++++|+..|++.
T Consensus 112 ~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 6666666666666666554
No 157
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.99 E-value=9.3e-05 Score=79.62 Aligned_cols=119 Identities=10% Similarity=-0.009 Sum_probs=72.8
Q ss_pred HHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHcc
Q 005305 371 SALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRS 446 (703)
Q Consensus 371 ~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~ 446 (703)
..+...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|++.|++..+. .| +..++..+..++...
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 334556667777777777777663 234567777777777777777777777777764 34 345666667777777
Q ss_pred CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHH--HHhcCChHHHHHHHH
Q 005305 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIEL--LGREGLLDEAFALIR 493 (703)
Q Consensus 447 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 493 (703)
|++++|.+.|++..+... .+...+..+..+ +.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777777765321 223334444444 566677777777666
No 158
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.96 E-value=8e-05 Score=74.00 Aligned_cols=94 Identities=9% Similarity=-0.184 Sum_probs=67.3
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCC---CcccHHHHHHHHH
Q 005305 232 RTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEK---TTVGWNTIIAGYA 308 (703)
Q Consensus 232 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~ 308 (703)
..+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.|++..+. +...|..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344455555666666666666666666654 446777788888888888888888888876652 4556777788888
Q ss_pred HcCCcHHHHHHHHHHHHC
Q 005305 309 LHGYSEEALDLYYEMRDS 326 (703)
Q Consensus 309 ~~g~~~~A~~l~~~m~~~ 326 (703)
+.|++++|+..|++..+.
T Consensus 84 ~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877653
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.95 E-value=2.2e-05 Score=67.45 Aligned_cols=94 Identities=9% Similarity=-0.030 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc-------hHHH
Q 005305 470 MHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS-------NYVV 540 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 540 (703)
..+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34556777777888888888888763 3334 5667888888888889999999999988888876543 5777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHh
Q 005305 541 LLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 541 l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
++.+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 88899999999999999988764
No 160
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.94 E-value=4e-05 Score=67.27 Aligned_cols=104 Identities=11% Similarity=-0.004 Sum_probs=63.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 005305 435 TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACR 512 (703)
Q Consensus 435 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~ 512 (703)
.+..+...+.+.|++++|...|+...+. -+.+...|..+...|.+.|++++|...|++. ...| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444445555666666666666665542 2234555566666666666666666666653 1222 4455666777777
Q ss_pred HcCChhHHHHHHHHHhCCCCCCcchHHH
Q 005305 513 VNGNLELGKFAAEKLYGMEPEKLSNYVV 540 (703)
Q Consensus 513 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 540 (703)
..|++++|...+++++++.|+++.....
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 7777777777777777777776655443
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.89 E-value=0.00013 Score=63.76 Aligned_cols=113 Identities=12% Similarity=-0.025 Sum_probs=62.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHH
Q 005305 397 NVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN----HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHY 472 (703)
Q Consensus 397 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 472 (703)
+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...++...+. .
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~------ 95 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---D------ 95 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---T------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---C------
Confidence 3445555555666666666666666665542 343 233334444444444444444444444331 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 005305 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY 545 (703)
Q Consensus 473 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 545 (703)
+.+...|..+..++...|++++|...++++++++|++...+..+..+.
T Consensus 96 -------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 96 -------------------------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp -------------------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred -------------------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 123455666666666677777777777777777777666655555543
No 162
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.89 E-value=0.00025 Score=60.23 Aligned_cols=91 Identities=16% Similarity=-0.019 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHH
Q 005305 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480 (703)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 480 (703)
|..+...+...|++++|+..|++..... ..+...+..+...+...|++++|...++...+. .+.+...+..+...|.
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHHH
Confidence 3333344444444444444444444321 112233334444444444444444444444331 1122334444444444
Q ss_pred hcCChHHHHHHHHh
Q 005305 481 REGLLDEAFALIRG 494 (703)
Q Consensus 481 ~~g~~~~A~~~~~~ 494 (703)
+.|++++|.+.+++
T Consensus 92 ~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 92 SLNKHVEAVAYYKK 105 (131)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHH
Confidence 44444444444443
No 163
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.87 E-value=9.5e-05 Score=63.07 Aligned_cols=104 Identities=10% Similarity=-0.086 Sum_probs=51.2
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC
Q 005305 439 VLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGN 516 (703)
Q Consensus 439 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~ 516 (703)
....+.+.|++++|...|+...+. -+.+...|..+...|.+.|++++|.+.+++. ...| +...|..+..++...|+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence 333444444444444444444431 1223344444555555555555555555442 1122 34455555566666666
Q ss_pred hhHHHHHHHHHhCCC------CCCcchHHHHHHH
Q 005305 517 LELGKFAAEKLYGME------PEKLSNYVVLLNI 544 (703)
Q Consensus 517 ~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 544 (703)
+++|...++++++++ |++...+..+..+
T Consensus 88 ~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 88 YASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 666666666666666 5555444444433
No 164
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.87 E-value=3.8e-05 Score=67.84 Aligned_cols=61 Identities=13% Similarity=0.049 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhCC-------CCCCcchH----HHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYGM-------EPEKLSNY----VVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.|..+..++...|++++|...+++++++ +|++...| ...+.+|...|++++|.+.+++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777777788888888888888777777 99999999 9999999999999999999998864
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.87 E-value=0.0001 Score=66.29 Aligned_cols=107 Identities=12% Similarity=-0.047 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTAC 511 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 511 (703)
..+..+...+...|++++|...|+...+. .+.+...|..+...|.+.|++++|++.|++. ...| +...|..+..++
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44555556666666666666666666552 2234566667777777777777777777653 2233 466888888888
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHH
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLL 542 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 542 (703)
...|++++|...++++++++|++...|....
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 9999999999999999999999887654443
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.86 E-value=9.7e-05 Score=66.34 Aligned_cols=64 Identities=17% Similarity=0.131 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 501 KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 501 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
...|..+..++...|++++|...++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4578888889999999999999999999999999999999999999999999999999988753
No 167
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.85 E-value=0.0021 Score=64.55 Aligned_cols=131 Identities=9% Similarity=-0.002 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcC--CHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCC-HHHHHHHH
Q 005305 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWG--RIEDARHVFDKML---CKNVISWNALIAGYGNHGR-GEEAVELF 421 (703)
Q Consensus 348 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g--~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~-~~~A~~l~ 421 (703)
++.+..++..++.... .+..+|+.-.-.+.+.| .++++..+++.+. .+|..+|+--.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 3455556666655432 25556655555555555 3677777777664 3455666666666666666 46777777
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHcc--------------CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhc
Q 005305 422 EQMLLNGMRPNHVTFLAVLSACSRS--------------GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE 482 (703)
Q Consensus 422 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 482 (703)
+++++..+. |...|+.......+. +.++++.+++..... --+-|...|+.+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc
Confidence 777765333 445555444443333 335566666666554 2233445555444444443
No 168
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.84 E-value=0.0017 Score=65.20 Aligned_cols=179 Identities=13% Similarity=0.086 Sum_probs=130.5
Q ss_pred HHHHHHHhhhcC---cCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCC-HHHHHHHH
Q 005305 383 IEDARHVFDKML---CKNVISWNALIAGYGNHG--RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL-SERGWEIF 456 (703)
Q Consensus 383 ~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~~~ 456 (703)
++++..+++.+. .++..+|+.-...+...| .+++++.+++++.+...+ |...|+.-.....+.|. ++++.+++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777774 357778888777777777 489999999999986433 66778777777788887 68999999
Q ss_pred HHhHhhcCCCCchHHHHHHHHHHHhc--------------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc------
Q 005305 457 QSMSRDHKIKPRAMHYACMIELLGRE--------------GLLDEAFALIRGA-PFKT-TKNMWAALLTACRVN------ 514 (703)
Q Consensus 457 ~~m~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~------ 514 (703)
+.+.+. -+.+...|+....++.+. +.++++++.+.+. ...| |...|+-+-..+...
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999873 345667777776666655 4578888888774 3334 677887665555544
Q ss_pred -----CChhHHHHHHHHHhCCCCCCcchHHHHHHHH---HhCCChHHHHHHHHHHHhC
Q 005305 515 -----GNLELGKFAAEKLYGMEPEKLSNYVVLLNIY---NSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 515 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y---~~~g~~~~A~~~~~~m~~~ 564 (703)
+.++++...++++++++|++.-.+..++... ...|..++....+.++.+-
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4578899999999999999754443333322 2467788888888888753
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.78 E-value=5.2e-05 Score=64.88 Aligned_cols=91 Identities=16% Similarity=0.089 Sum_probs=64.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC---cchHHHHHHHH
Q 005305 474 CMIELLGREGLLDEAFALIRGA-PFKTT-K---NMWAALLTACRVNGNLELGKFAAEKLYGMEPEK---LSNYVVLLNIY 545 (703)
Q Consensus 474 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y 545 (703)
.+...+.+.|++++|.+.|++. ...|+ . ..|..+..++...|++++|...++++++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455566677777777777653 11222 2 356667777778888888888888888888877 66688888888
Q ss_pred HhCCChHHHHHHHHHHHhC
Q 005305 546 NSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 546 ~~~g~~~~A~~~~~~m~~~ 564 (703)
...|++++|.+.+++..+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888877653
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.77 E-value=0.00022 Score=76.21 Aligned_cols=160 Identities=9% Similarity=-0.009 Sum_probs=107.9
Q ss_pred CCHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 005305 381 GRIEDARHVFDKMLC---KNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457 (703)
Q Consensus 381 g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 457 (703)
+++++|...|+.... .+...|..+...|.+.|++++|+..|++.++. .|+...+ . -++..+
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~--- 311 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA--- 311 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH---
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH---
Confidence 344455555544322 23456777777888888888888888887763 2322100 0 011110
Q ss_pred HhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCc
Q 005305 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535 (703)
Q Consensus 458 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 535 (703)
... -....|..+...|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|++.
T Consensus 312 -~~~-----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 312 -SES-----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp -HHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred -HHH-----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 000 11356777888888889999998888773 2233 577888999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCChHHHHH-HHHHHH
Q 005305 536 SNYVVLLNIYNSSGKLKEAAE-VIRTLR 562 (703)
Q Consensus 536 ~~~~~l~~~y~~~g~~~~A~~-~~~~m~ 562 (703)
.++..+..++.+.|++++|.+ .++.|-
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998874 445554
No 171
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.76 E-value=0.0001 Score=60.76 Aligned_cols=93 Identities=15% Similarity=0.008 Sum_probs=44.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC--chHHHHHH
Q 005305 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP--RAMHYACM 475 (703)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l 475 (703)
...|..+...+...|++++|+..|++..+.. ..+...+..+..++...|++++|...|+...+. .+. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHH
Confidence 4455555555666666666666666655532 113344444455555555555555555555441 111 23344444
Q ss_pred HHHHHhc-CChHHHHHHHH
Q 005305 476 IELLGRE-GLLDEAFALIR 493 (703)
Q Consensus 476 i~~~~~~-g~~~~A~~~~~ 493 (703)
...|.+. |++++|.+.++
T Consensus 83 ~~~~~~~~~~~~~A~~~~~ 101 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEA 101 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 4444444 44444444443
No 172
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.75 E-value=0.00023 Score=60.99 Aligned_cols=90 Identities=17% Similarity=0.091 Sum_probs=43.8
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcC---cCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--------HHHHH
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKML---CKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH--------VTFLA 438 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~~~ 438 (703)
+..|...|.+.|++++|...|++.. ..+...|+.+..+|...|++++|++.|++.++. .|+. .+|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHHHHHHH
Confidence 3344555555555555555555442 223445555555555555555555555555442 1111 23334
Q ss_pred HHHHHHccCCHHHHHHHHHHhHh
Q 005305 439 VLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 439 ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
+..++...|++++|.+.|+...+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444455555555555554443
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.75 E-value=0.00014 Score=62.90 Aligned_cols=98 Identities=9% Similarity=-0.084 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTAC 511 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~ 511 (703)
..+..+...+...|++++|...|+...+. .+.+...|..+...|...|++++|...+++. ...| +...|..+..++
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 33444444444444444444444444331 1222344444445555555555555544432 1112 344555555566
Q ss_pred HHcCChhHHHHHHHHHhCCCCC
Q 005305 512 RVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
...|++++|...+++++++.|+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChh
Confidence 6666666666666666655554
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.75 E-value=1.9e-05 Score=66.67 Aligned_cols=83 Identities=13% Similarity=0.117 Sum_probs=60.7
Q ss_pred cCChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHH
Q 005305 482 EGLLDEAFALIRGA-PF---KT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAE 556 (703)
Q Consensus 482 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~ 556 (703)
.|++++|+..|++. .. .| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.+.|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46677777777663 22 13 344677777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhC
Q 005305 557 VIRTLRRK 564 (703)
Q Consensus 557 ~~~~m~~~ 564 (703)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88877643
No 175
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.73 E-value=9e-05 Score=63.10 Aligned_cols=95 Identities=15% Similarity=0.065 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC-------cchHHH
Q 005305 470 MHYACMIELLGREGLLDEAFALIRGA-PF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK-------LSNYVV 540 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 540 (703)
..+..+...+...|++++|...+++. .. +.+...|..+...+...|++++|...+++++...|++ +..|..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45566667777777777777777653 11 2356677777777888888888888888888777665 678899
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhC
Q 005305 541 LLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 541 l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
++.+|...|++++|.+.+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999988753
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.00095 Score=70.52 Aligned_cols=122 Identities=12% Similarity=0.020 Sum_probs=79.1
Q ss_pred HHhhHHhcCCHHHHHHHhhhcCc-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcCH-HHHHH
Q 005305 373 LVDFYSKWGRIEDARHVFDKMLC-----KN----VISWNALIAGYGNHGRGEEAVELFEQMLLN----GMRPNH-VTFLA 438 (703)
Q Consensus 373 Li~~y~k~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~ 438 (703)
+...+...|+.+.|..++..... .+ ..++..+...|...|++++|..++++.... +-+|.. .++..
T Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (434)
T 4b4t_Q 101 IEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLL 180 (434)
T ss_dssp HHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 33444455666666666655421 11 235667778888888888888888877652 112222 46777
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcC-C--CCc--hHHHHHHHHHHHhcCChHHHHHHHHh
Q 005305 439 VLSACSRSGLSERGWEIFQSMSRDHK-I--KPR--AMHYACMIELLGREGLLDEAFALIRG 494 (703)
Q Consensus 439 ll~a~~~~g~~~~a~~~~~~m~~~~~-~--~p~--~~~~~~li~~~~~~g~~~~A~~~~~~ 494 (703)
+...|...|++++|..+++....... + +|. ...+..+...+...|++++|...|.+
T Consensus 181 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 181 ESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 77888889999999988887654211 1 111 34566777777888999998777654
No 177
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.72 E-value=0.00011 Score=68.58 Aligned_cols=144 Identities=10% Similarity=-0.105 Sum_probs=87.2
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCc---CCh----------------hhH
Q 005305 341 ICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLC---KNV----------------ISW 401 (703)
Q Consensus 341 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~----------------~~~ 401 (703)
.....+.++.+.+.+....... ......+..+...|.+.|++++|...|++... .+. ..|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 3444566666666555332211 11345677788899999999999999998742 222 566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHH
Q 005305 402 NALIAGYGNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLG 480 (703)
Q Consensus 402 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 480 (703)
..+...|...|++++|+..+++..+. .| +...+..+..++...|++++|...|+...+. .+.+...+..+..++.
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 167 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVN 167 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHH
Confidence 77777777778888888877777764 33 4466666667777777777777777777652 1234455556666665
Q ss_pred hcCChHHHH
Q 005305 481 REGLLDEAF 489 (703)
Q Consensus 481 ~~g~~~~A~ 489 (703)
+.|+.+++.
T Consensus 168 ~~~~~~~~~ 176 (198)
T 2fbn_A 168 KLKEARKKD 176 (198)
T ss_dssp HHHHHHC--
T ss_pred HHHHHHHHH
Confidence 555555544
No 178
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.72 E-value=0.00021 Score=73.01 Aligned_cols=137 Identities=10% Similarity=0.021 Sum_probs=70.6
Q ss_pred CChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCC--------------hhhHHHHHHHH
Q 005305 179 GMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCG--------------SRTFATMIRAS 241 (703)
Q Consensus 179 g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--------------~~t~~~ll~a~ 241 (703)
+++++|...|+...+ .+...|..+...|.+.|++++|+..|++......... ...+..+..++
T Consensus 127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544332 2355677788888888888888888888776532211 23444444444
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC---CCcccHHHHHHHHHHcCCcHHH
Q 005305 242 AGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE---KTTVGWNTIIAGYALHGYSEEA 316 (703)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 316 (703)
...|++++|...+..+++.. +.+...+..+..+|...|++++|...|++..+ .+...|..+...+.+.|+.++|
T Consensus 207 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443 33344444444444444444444444444321 1233344444444444444444
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.66 E-value=0.00011 Score=62.63 Aligned_cols=62 Identities=8% Similarity=-0.024 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
..|..+...+...|++++|+..|++..+.. ..+...+..+...+...|++++|..+++.+.+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 345555666666666666666666666542 12344555555555566666666666655544
No 180
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.0074 Score=63.51 Aligned_cols=162 Identities=9% Similarity=-0.059 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHC-CCCCCHhh---HHHHHH-HHhccCCHHHHHHHHHHHHH----cCCCC-chHH
Q 005305 300 WNTIIAGYALHGYSEEALDLYYEMRDS-GVKMDHFT---FSMIIR-ICTRLASLEHAKQAHAGLVR----HGFGL-DIVA 369 (703)
Q Consensus 300 ~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~t---~~~ll~-a~~~~~~~~~a~~~~~~~~~----~g~~~-~~~~ 369 (703)
+..+...|...|++++|.+.+.++... +..++..+ ....+. .+...|+.+.+..++..... .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455666677777777777776665431 11112111 112222 23345667777777766654 12222 2346
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcCc--------C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-Cc-C--HH
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKMLC--------K-NVISWNALIAGYGNHGRGEEAVELFEQMLLN--GM-RP-N--HV 434 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~~--------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~-~p-~--~~ 434 (703)
+..|...|...|++++|..++++... + .+..|..++..|...|++++|..++++.... .+ .| . ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 66777888888888888877776521 1 2346777778888888888888888776542 11 12 1 13
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 435 TFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 435 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
.+..+...+...|++++|...|....+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445555666777888888777766543
No 181
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.63 E-value=0.00012 Score=64.89 Aligned_cols=137 Identities=15% Similarity=0.001 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-cCH----HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHH
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMR-PNH----VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA 473 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 473 (703)
.++..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|..+++...+...-.++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--- 86 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--- 86 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH---
Confidence 35666667777777777777777776652111 111 2445555556666666666666665543110001100
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCC------CCCcchHHHHHHHHHh
Q 005305 474 CMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGME------PEKLSNYVVLLNIYNS 547 (703)
Q Consensus 474 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~y~~ 547 (703)
....++..+...+...|++++|...+++.+++. +.....+..++.+|..
T Consensus 87 -------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 87 -------------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 002233444444455555555555555444321 1123567788899999
Q ss_pred CCChHHHHHHHHHHHh
Q 005305 548 SGKLKEAAEVIRTLRR 563 (703)
Q Consensus 548 ~g~~~~A~~~~~~m~~ 563 (703)
.|++++|.+.+++..+
T Consensus 142 ~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999998887654
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.61 E-value=0.00049 Score=58.57 Aligned_cols=66 Identities=12% Similarity=-0.105 Sum_probs=32.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch
Q 005305 472 YACMIELLGREGLLDEAFALIRGA-PFKTT----KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 472 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 537 (703)
+..+...|.+.|++++|.+.+++. ...|+ ...+..+..++...|++++|...+++++...|+++..
T Consensus 42 ~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 42 LYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 333444444444444444444432 11121 2344455555556666666666666666666665443
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.58 E-value=0.00053 Score=60.59 Aligned_cols=126 Identities=17% Similarity=0.057 Sum_probs=74.0
Q ss_pred HHHHHHHhhHHhcCCHHHHHHHhhhcCc-----CC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCcC-H
Q 005305 368 VANSALVDFYSKWGRIEDARHVFDKMLC-----KN----VISWNALIAGYGNHGRGEEAVELFEQMLLN----GMRPN-H 433 (703)
Q Consensus 368 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~ 433 (703)
.++..+...|...|++++|...|++... .+ ..++..+...|...|++++|+..|++..+. +-.+. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3455666667777777777777766532 11 136677777888888888888888876652 11111 2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHhhc---CCCC-chHHHHHHHHHHHhcCChHHHHHHHH
Q 005305 434 VTFLAVLSACSRSGLSERGWEIFQSMSRDH---KIKP-RAMHYACMIELLGREGLLDEAFALIR 493 (703)
Q Consensus 434 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 493 (703)
..+..+...+...|++++|...++...+.. +..+ ....+..+...|...|++++|.+.++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 455566667777778888777777665421 1000 12334445555555555555555554
No 184
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.58 E-value=0.00035 Score=59.20 Aligned_cols=91 Identities=10% Similarity=-0.008 Sum_probs=43.6
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhH
Q 005305 442 ACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLEL 519 (703)
Q Consensus 442 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~ 519 (703)
.+.+.|++++|...|+...+. -+.+...|..+..++.+.|++++|+..+++. ...| +...|..+..++...|+.++
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~ 103 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANA 103 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344444445554444444431 1223444444555555555555555555442 2223 34455556666666666666
Q ss_pred HHHHHHHHhCCCCCC
Q 005305 520 GKFAAEKLYGMEPEK 534 (703)
Q Consensus 520 a~~~~~~~~~~~p~~ 534 (703)
|...++++++.+|++
T Consensus 104 A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 104 ALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHC-----
T ss_pred HHHHHHHHHHhCcCC
Confidence 666666666666654
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.58 E-value=0.00024 Score=73.51 Aligned_cols=138 Identities=9% Similarity=-0.037 Sum_probs=101.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
...|..+...|.+.|++++|+..|++.++. .|+.. .....+++ .+ .-+.+...|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~-------~~--~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADG-------AK--LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHH-------GG--GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHH-------HH--HHHHHHHHHHHHHH
Confidence 345777778888888888888888887752 11110 00011111 10 01123567788888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHH
Q 005305 478 LLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAA 555 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~ 555 (703)
.|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|++...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998873 4445 56788889999999999999999999999999999999999999999988888876
Q ss_pred H
Q 005305 556 E 556 (703)
Q Consensus 556 ~ 556 (703)
+
T Consensus 362 k 362 (370)
T 1ihg_A 362 K 362 (370)
T ss_dssp H
T ss_pred H
Confidence 5
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.56 E-value=0.00015 Score=74.07 Aligned_cols=148 Identities=10% Similarity=-0.050 Sum_probs=82.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 398 VISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 398 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
...|..+...+.+.|++++|+..|++.+.. .|+... +...|..+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 446777777888899999999999998873 565442 22334444433222 1 136778888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHH-HhCCChHHH
Q 005305 478 LLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIY-NSSGKLKEA 554 (703)
Q Consensus 478 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~~~A 554 (703)
.|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|++...+..|..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999998874 3334 5678888999999999999999999999999999988888888874 455677788
Q ss_pred HHHHHHHHhCC
Q 005305 555 AEVIRTLRRKG 565 (703)
Q Consensus 555 ~~~~~~m~~~~ 565 (703)
.+++++|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888776543
No 187
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.51 E-value=0.00015 Score=64.02 Aligned_cols=71 Identities=17% Similarity=0.065 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHh--------CCCCCCH-HHH----HHHHHHHHHcCChhHHHHHHHHHhCCCCCCcch
Q 005305 471 HYACMIELLGREGLLDEAFALIRG--------APFKTTK-NMW----AALLTACRVNGNLELGKFAAEKLYGMEPEKLSN 537 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~--------m~~~p~~-~~~----~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~ 537 (703)
.|..+..++.+.|++++|+..+++ ....|+. ..| .....++...|++++|...++++++++|++...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 455555555555555555555443 2336764 478 889999999999999999999999999998765
Q ss_pred HHHH
Q 005305 538 YVVL 541 (703)
Q Consensus 538 ~~~l 541 (703)
+.-+
T Consensus 139 ~~~~ 142 (159)
T 2hr2_A 139 TPGK 142 (159)
T ss_dssp CTTH
T ss_pred HHHH
Confidence 4433
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.50 E-value=0.00029 Score=72.02 Aligned_cols=152 Identities=9% Similarity=-0.020 Sum_probs=80.2
Q ss_pred hHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHcc
Q 005305 367 IVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRS 446 (703)
Q Consensus 367 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 446 (703)
...+..+...|.+.|++++|...|++....+.... .+...|+..++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45677888899999999999999998753222111 1223333444433221 13667777888889
Q ss_pred CCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHHcCChhHHHHH
Q 005305 447 GLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGA-PFKTTK-NMWAALLTA-CRVNGNLELGKFA 523 (703)
Q Consensus 447 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a-~~~~g~~~~a~~~ 523 (703)
|++++|...++...+. -+.+...|..+..+|...|++++|.+.|++. ...|+. ..+..|... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888772 2346778888889999999999999999875 445543 344444444 2455677788889
Q ss_pred HHHHhCCCCCCc
Q 005305 524 AEKLYGMEPEKL 535 (703)
Q Consensus 524 ~~~~~~~~p~~~ 535 (703)
++++++..|+++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999998888764
No 189
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.49 E-value=0.00032 Score=57.06 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 500 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
+...|..+...+...|++++|...++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999999999999999999999999999999998764
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.48 E-value=0.0029 Score=69.25 Aligned_cols=169 Identities=10% Similarity=-0.020 Sum_probs=126.6
Q ss_pred CHHHHHHHhhhcCc---CChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccC-
Q 005305 382 RIEDARHVFDKMLC---KNVISWNALIAGYGNHGR----------GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSG- 447 (703)
Q Consensus 382 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g- 447 (703)
.-++|.+.++.+.. .+...|+.--..+...|+ ++++++.++++.+...+ +..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34566777777643 344567665555555555 88889999888875333 5577777777788888
Q ss_pred -CHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcC-ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHc---------
Q 005305 448 -LSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREG-LLDEAFALIRGA-PFKT-TKNMWAALLTACRVN--------- 514 (703)
Q Consensus 448 -~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~--------- 514 (703)
+++++.+.++.+.+. -+.+...|+.-.-++.+.| ..+++++.++++ ...| |...|......+...
T Consensus 123 ~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence 678999999888873 3445667777777777888 888899888875 3344 667888777776653
Q ss_pred -----CChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHH
Q 005305 515 -----GNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKE 553 (703)
Q Consensus 515 -----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 553 (703)
+.++++...+.+++.++|++..+|.-+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 456889999999999999999999999999999998655
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00028 Score=58.18 Aligned_cols=93 Identities=10% Similarity=-0.066 Sum_probs=73.6
Q ss_pred CchHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCC------cchH
Q 005305 467 PRAMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEK------LSNY 538 (703)
Q Consensus 467 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~------~~~~ 538 (703)
++...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|++ ...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 34566777888888888999888888763 2233 67788888889999999999999999999999998 6677
Q ss_pred HHHHHHHHhCCChHHHHHHHH
Q 005305 539 VVLLNIYNSSGKLKEAAEVIR 559 (703)
Q Consensus 539 ~~l~~~y~~~g~~~~A~~~~~ 559 (703)
..++.++...|++++|.+.++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 788888888887777665443
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.39 E-value=0.00012 Score=61.51 Aligned_cols=66 Identities=12% Similarity=0.018 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcc
Q 005305 471 HYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLS 536 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~ 536 (703)
.+..+...|.+.|++++|.+.|++. ...| +...+..+..++...|++++|...++++++..|+++.
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 3444444444555555555544442 1122 3444555555555666666666666666655565543
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.38 E-value=0.001 Score=68.71 Aligned_cols=113 Identities=4% Similarity=-0.062 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 005305 433 HVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKT-TKNMWAALLTAC 511 (703)
Q Consensus 433 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~a~ 511 (703)
...+..+...+.+.|++++|...|+...+.. +.. ...-..+++.+ ..| +...|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 3456666777778888888888887776510 100 00011111111 122 456888899999
Q ss_pred HHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 512 RVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 512 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
...|++++|...++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998753
No 194
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.37 E-value=0.00058 Score=73.04 Aligned_cols=97 Identities=13% Similarity=0.044 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhC-----CCCCC
Q 005305 470 MHYACMIELLGREGLLDEAFALIRGA---------PFKTTK-NMWAALLTACRVNGNLELGKFAAEKLYG-----MEPEK 534 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~ 534 (703)
.+++.|..+|...|++++|+.++++. +..|+. .+++.|...|...|++++|+..++++++ +.|+.
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34555555555555555555555432 112332 2556666666666666666666666552 34554
Q ss_pred c---chHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 535 L---SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 535 ~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
+ .....|..++...|++++|+.++++++++..
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 4456788889999999999999999987543
No 195
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.34 E-value=0.00043 Score=61.97 Aligned_cols=76 Identities=14% Similarity=-0.045 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCc-chHHHHHHH
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL-SNYVVLLNI 544 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 544 (703)
...|..+...|.+.|++++|+..+++. ...| +...|..+..++...|++++|...++++++++|+++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 456777778888888888888887763 2334 566888888889999999999999999999999876 334344333
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.29 E-value=0.00079 Score=53.05 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666677777777777777777653 2223 56677778888888888888888888888888888888888888876
Q ss_pred hCC
Q 005305 547 SSG 549 (703)
Q Consensus 547 ~~g 549 (703)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.27 E-value=0.00055 Score=57.15 Aligned_cols=77 Identities=8% Similarity=-0.026 Sum_probs=64.4
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 487 EAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 487 ~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
+|.+.|++. ...| +...|..+...+...|++++|...++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555542 3334 5678888888999999999999999999999999999999999999999999999999998765
No 198
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.17 E-value=0.0015 Score=52.11 Aligned_cols=69 Identities=17% Similarity=0.024 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 498 KTTKNMWAALLTACRVNGN---LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 498 ~p~~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
++|+..|..+..++...++ .++|...++++++++|+++.+...++..+.+.|++++|.+.++++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3467778888888765555 79999999999999999999999999999999999999999999987654
No 199
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.15 E-value=0.0029 Score=67.54 Aligned_cols=120 Identities=13% Similarity=-0.017 Sum_probs=80.5
Q ss_pred chHHHHHHHhhHHhcCCHHHHHHHhhhcCc--C-C---------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005305 366 DIVANSALVDFYSKWGRIEDARHVFDKMLC--K-N---------------VISWNALIAGYGNHGRGEEAVELFEQMLLN 427 (703)
Q Consensus 366 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 427 (703)
....+..+...|.+.|++++|...|++... | + ...|..+..+|.+.|++++|+..|++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456788889999999999999999998742 2 2 356666777777777777777777777764
Q ss_pred CCCc-CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHH
Q 005305 428 GMRP-NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAF 489 (703)
Q Consensus 428 g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 489 (703)
.| +...+..+..++...|++++|...|+.+.+. -+.+...+..+..++.+.|+.++|.
T Consensus 347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3456666666777777777777777766541 1223445556666666666666554
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.15 E-value=0.0002 Score=63.12 Aligned_cols=85 Identities=11% Similarity=0.007 Sum_probs=61.9
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCC----------hhHHHHHHHHHhCCCCCCcchHHHHHHHHHhC
Q 005305 481 REGLLDEAFALIRGA-PFKT-TKNMWAALLTACRVNGN----------LELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS 548 (703)
Q Consensus 481 ~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 548 (703)
|.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|.+.
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344555555555542 2223 44455555555554443 56999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHHhCC
Q 005305 549 G-----------KLKEAAEVIRTLRRKG 565 (703)
Q Consensus 549 g-----------~~~~A~~~~~~m~~~~ 565 (703)
| ++++|.+.|++..+.+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999988654
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.0014 Score=53.80 Aligned_cols=66 Identities=11% Similarity=-0.002 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 500 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
+...|..+...+...|++++|...+++++++.|+++..|..++.+|.+.|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788889999999999999999999999999999999999999999999999999999988643
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.02 E-value=0.0015 Score=69.78 Aligned_cols=113 Identities=14% Similarity=0.033 Sum_probs=82.7
Q ss_pred HHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhC-----CCCCC---cchHHH
Q 005305 479 LGREGLLDEAFALIRGA---------PFKTTK-NMWAALLTACRVNGNLELGKFAAEKLYG-----MEPEK---LSNYVV 540 (703)
Q Consensus 479 ~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~---~~~~~~ 540 (703)
+...|++++|+.++++. +..|+. .+++.|..+|...|++++|+..++++++ +.|++ ..+|+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45678888888777652 113333 4789999999999999999999888763 34544 456889
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHH
Q 005305 541 LLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEIS 609 (703)
Q Consensus 541 l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 609 (703)
|+.+|..+|++++|..++++..+--.. .- ...||...++..++.+...+++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~-----------------~l-G~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLV-----------------TH-GPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HT-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHH-----------------Hh-CCCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987642111 01 2369998888877777666554
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.96 E-value=0.0069 Score=52.43 Aligned_cols=90 Identities=13% Similarity=0.011 Sum_probs=50.5
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHh---
Q 005305 475 MIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRV----NGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNS--- 547 (703)
Q Consensus 475 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~--- 547 (703)
|..+|...+.+++|.+.|++.-...++..+..|...|.. .++.++|...++++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 333333334444444444432222344444444444444 45566666666666544 345677777777777
Q ss_pred -CCChHHHHHHHHHHHhCCC
Q 005305 548 -SGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 548 -~g~~~~A~~~~~~m~~~~~ 566 (703)
.+++++|.+++++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 7778888888777776653
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.91 E-value=0.0018 Score=68.16 Aligned_cols=89 Identities=13% Similarity=0.125 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHhC-----CC---CCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCccCCceeE
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLYG-----ME---PEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLRMLPACSW 574 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~---p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~~~~~~s~ 574 (703)
+++.|..+|...|++++|+..++++++ +. |+-...|..|+.+|..+|++++|..++++..+--..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------- 403 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------- 403 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-------
Confidence 455555566666666666665555542 22 333456889999999999999999999987642110
Q ss_pred EEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHH
Q 005305 575 IEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEIS 609 (703)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 609 (703)
.-...||...+++..+.+...+|+
T Consensus 404 -----------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 404 -----------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp -----------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred -----------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 112369999999888888888776
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.82 E-value=0.022 Score=62.24 Aligned_cols=150 Identities=12% Similarity=0.010 Sum_probs=119.8
Q ss_pred hcC-CHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCC----------HHHHHHHHHHhHhhcCCCCchHHHHHHHH
Q 005305 410 NHG-RGEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGL----------SERGWEIFQSMSRDHKIKPRAMHYACMIE 477 (703)
Q Consensus 410 ~~g-~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 477 (703)
+.| ..++|++.++++.+. .|+. ..|+.--.++.+.|+ ++++...++.+.+. -+.+...|+.-.-
T Consensus 40 ~~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w 115 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCW 115 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 344 467899999999984 6655 556655555666666 89999999999873 3456677877778
Q ss_pred HHHhcC--ChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhC----
Q 005305 478 LLGREG--LLDEAFALIRGAP-F-KTTKNMWAALLTACRVNG-NLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSS---- 548 (703)
Q Consensus 478 ~~~~~g--~~~~A~~~~~~m~-~-~p~~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~---- 548 (703)
++.+.| ++++|++.++++- . +.|...|+.-.......| ..+++...++++++.+|+|..+|.....++.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 888899 7799999999862 2 347789998888888888 899999999999999999999999999998874
Q ss_pred ----------CChHHHHHHHHHHHh
Q 005305 549 ----------GKLKEAAEVIRTLRR 563 (703)
Q Consensus 549 ----------g~~~~A~~~~~~m~~ 563 (703)
++++++.+.+++...
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccHHHHHHHHHHHHHHHh
Confidence 567889888877764
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.76 E-value=0.0032 Score=49.37 Aligned_cols=64 Identities=20% Similarity=0.247 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 501 KNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 501 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
...|..+...+...|++++|...++++++..|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4578888889999999999999999999999999999999999999999999999999998754
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.65 E-value=0.033 Score=48.05 Aligned_cols=109 Identities=15% Similarity=0.057 Sum_probs=54.5
Q ss_pred CcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHh----cCCHHHHH
Q 005305 312 YSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK----WGRIEDAR 387 (703)
Q Consensus 312 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~ 387 (703)
++++|++.|++..+.| .|+.. +-..+......+.|...+....+.| +......|..+|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666666555 22222 3333444445555666666555543 34445555555554 45555555
Q ss_pred HHhhhcC-cCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 005305 388 HVFDKML-CKNVISWNALIAGYGN----HGRGEEAVELFEQMLLNG 428 (703)
Q Consensus 388 ~~f~~m~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 428 (703)
+.|++.. ..+..++..|...|.. .++.++|+..|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 5555442 2344444444444444 445555555555554443
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.52 E-value=0.0012 Score=58.16 Aligned_cols=101 Identities=11% Similarity=0.056 Sum_probs=54.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHHHccCCH----------HHHHHHHHHhHhhcCCCC-chHHHHHHH
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRP-NHVTFLAVLSACSRSGLS----------ERGWEIFQSMSRDHKIKP-RAMHYACMI 476 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~----------~~a~~~~~~m~~~~~~~p-~~~~~~~li 476 (703)
.+.+++++|++.+++..+. .| +...|..+..++...+.+ ++|+..|++..+ +.| ....|..+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 3445566666666666653 33 335555555555555443 244444444443 122 233444444
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCc
Q 005305 477 ELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKL 535 (703)
Q Consensus 477 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 535 (703)
.+|...|.+ .|+.. ...|++++|...++++++++|++.
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCH
Confidence 444433322 12211 012589999999999999999974
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.39 E-value=0.029 Score=56.55 Aligned_cols=144 Identities=17% Similarity=0.117 Sum_probs=79.7
Q ss_pred CcCChhhHHHHHHHHHh--cCC---HHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC
Q 005305 394 LCKNVISWNALIAGYGN--HGR---GEEAVELFEQMLLNGMRPNH-VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKP 467 (703)
Q Consensus 394 ~~~~~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 467 (703)
+..+...|...+.+... .+. ..+|+.+|++.++. .|+. ..+..+..++.. . . . .+- .
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~----------~--~-~-~~~-~ 252 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIV----------R--H-S-QHP-L 252 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH----------H--H-H-HSC-C
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH----------H--h-c-cCC-C
Confidence 34577788877765442 333 57899999999884 6764 444443333330 0 0 0 110 0
Q ss_pred chHHHHHHHHHHHhcCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 005305 468 RAMHYACMIELLGREGLLDEAFALIRGAPF-KTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYN 546 (703)
Q Consensus 468 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 546 (703)
+..... .+..|.+-...+.. +.++.+|.++...+...|++++|...+++++.++|+ ...|..++.++.
T Consensus 253 ~~~~~~----------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~ 321 (372)
T 3ly7_A 253 DEKQLA----------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYE 321 (372)
T ss_dssp CHHHHH----------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHH
T ss_pred chhhHH----------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Confidence 111000 01222222222222 335556666665566667777777777777777664 556667777777
Q ss_pred hCCChHHHHHHHHHHHhCC
Q 005305 547 SSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 547 ~~g~~~~A~~~~~~m~~~~ 565 (703)
-.|++++|.+.+++....+
T Consensus 322 ~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 322 MKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HTTCHHHHHHHHHHHHHHS
T ss_pred HCCCHHHHHHHHHHHHhcC
Confidence 7777777777776665543
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.37 E-value=0.0099 Score=47.96 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 005305 399 ISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN-HVTFLAVLSACSRSGLSERGWEIFQSMS 460 (703)
Q Consensus 399 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 460 (703)
..|..+...|...|++++|+..|++.++. .|+ ...|..+..++...|++++|.+.|+...
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444455555555555544442 222 2344444444444555555544444443
No 211
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.28 E-value=0.4 Score=40.03 Aligned_cols=140 Identities=10% Similarity=0.046 Sum_probs=99.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHH
Q 005305 409 GNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488 (703)
Q Consensus 409 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 488 (703)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+-+-+.+ ..||++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence 3457777777777777653 24445555555444455555555555555442221 346777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCCc
Q 005305 489 FALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGLR 567 (703)
Q Consensus 489 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~~ 567 (703)
..-+-.+.. +.......++.....|.-++-..+...++.-+|.+++...-++++|.+.|+..+|.+++++.-++|++
T Consensus 81 i~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 766666642 44556677888899999999999999987767667899999999999999999999999999999985
No 212
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.24 E-value=0.0038 Score=64.19 Aligned_cols=395 Identities=11% Similarity=0.071 Sum_probs=237.2
Q ss_pred hhhhhhhccccccCCCCcccchhhcccccCccCCCCCcccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHH
Q 005305 58 ECCLMEQGLKPRPKPNKIYTEELKESSLPDTQMKKPSAGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDAL 136 (703)
Q Consensus 58 ~~~~~~~li~~y~k~~~~~~aa~~~~~f~~~~~~~p~~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~l 136 (703)
...+|+.|-.++.+.+.+.+| ...|-+.. |...|..+|. ..+.|.+++-+..+...++.. -+...=+.|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eA---IdsyIkA~----Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteL 122 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEA---IDSYIKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETEL 122 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTT---TTSSCCCS----CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHH
T ss_pred CccHHHHHHHHHHccCchHHH---HHHHHhCC----ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHH
Confidence 557888888888888888888 66665533 7777899999 999999999998887666543 344555678
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHccCCC-----------------------
Q 005305 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE----------------------- 193 (703)
Q Consensus 137 l~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----------------------- 193 (703)
+-+|++.+++.+-++... .|+..-...+-+-+...|.++.|.-+|..+..
T Consensus 123 i~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999888765443332 45655556667777778888888888777652
Q ss_pred -CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHH
Q 005305 194 -RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCAL 272 (703)
Q Consensus 194 -~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 272 (703)
.++.||-.+-.+|...+++.-|.-.--.+.- .| .-+..++.-|-..|.+++-..+++..+... ....-+++.|
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---ha--deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTEL 269 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HA--DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 269 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CS--SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cH--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHH
Confidence 4778899999999999888766544333321 11 223345566777888888877777655221 3567789999
Q ss_pred HHHHHhCCCHHHHHHHHhhcCC----C-------CcccHHHHHHHHHHcCCcHHHHHHH-------------HHHHHCCC
Q 005305 273 IDMYSKCGSIEDAQGVFDEMSE----K-------TTVGWNTIIAGYALHGYSEEALDLY-------------YEMRDSGV 328 (703)
Q Consensus 273 i~~y~~~g~~~~A~~~f~~m~~----~-------~~~~~~~li~~~~~~g~~~~A~~l~-------------~~m~~~g~ 328 (703)
.-.|+|-. .++-.+-++..-. | ....|.-++-.|.+..+++.|.... .+....
T Consensus 270 aILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K-- 346 (624)
T 3lvg_A 270 AILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK-- 346 (624)
T ss_dssp HHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--
T ss_pred HHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--
Confidence 99999863 3333333332211 2 4457999999999988888775321 111110
Q ss_pred CCCHhh---------------HHHHHHHHhccCCHHHHHHHHHHHHH----------cCCCCchHHHHHHHhhHHhcCCH
Q 005305 329 KMDHFT---------------FSMIIRICTRLASLEHAKQAHAGLVR----------HGFGLDIVANSALVDFYSKWGRI 383 (703)
Q Consensus 329 ~pd~~t---------------~~~ll~a~~~~~~~~~a~~~~~~~~~----------~g~~~~~~~~~~Li~~y~k~g~~ 383 (703)
.+|... ++-+|.++...=+..++.+++...-. ---..+..+-.++-+.|....++
T Consensus 347 VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy 426 (624)
T 3lvg_A 347 VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDY 426 (624)
T ss_dssp CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhH
Confidence 112222 23344444333333333333332110 00112345666777777777776
Q ss_pred HHHHHHhhhcCc------------CChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHH
Q 005305 384 EDARHVFDKMLC------------KNVISWNAL-IAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSE 450 (703)
Q Consensus 384 ~~A~~~f~~m~~------------~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 450 (703)
+.-+...+.-.. .+..-+..+ ...|.+++++.+++.+.++ .+.-.| .+...+.+|+.+
T Consensus 427 ~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---DklykD------AietAa~S~~~e 497 (624)
T 3lvg_A 427 QALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---DSLYKD------AMQYASESKDTE 497 (624)
T ss_dssp HHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---TCCTTG------GGTTTTTCCCTT
T ss_pred HHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---cccHHH------HHHHHHHcCCHH
Confidence 655444333221 222222222 3356667777777665432 122222 234456677777
Q ss_pred HHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHH
Q 005305 451 RGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFAL 491 (703)
Q Consensus 451 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 491 (703)
-+.++++...+. -+.+.|.+++-.+-..=+++-++++
T Consensus 498 laeeLL~yFv~~----g~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 498 LAEELLQWFLQE----EKRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHHHHHHH----CSTHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHHHHHHHc----CchHHHHHHHHHHhhccChHHHHHH
Confidence 777777777652 2344555555555555566777666
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.20 E-value=0.0068 Score=63.61 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHh-------C-CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 503 MWAALLTACRVNGNLELGKFAAEKLY-------G-MEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 503 ~~~~ll~a~~~~g~~~~a~~~~~~~~-------~-~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
+++.|..+|...|++++|+..+++++ + -.|+-...|+.|+.+|..+|++++|..++++..+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 34444444444444444444444443 2 2244455688999999999999999999998764
No 214
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.09 E-value=0.021 Score=47.13 Aligned_cols=75 Identities=11% Similarity=-0.067 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChHHHHHHHc
Q 005305 112 EALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMIDARRLFD 189 (703)
Q Consensus 112 ~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 189 (703)
+|+..|++..+.. +.+...+..+...+...|++++|...++..++.. +.+...+..+...|.+.|++++|+..|+
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455555555443 3344555555555555666666666666555543 2233344444444444455555444443
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.04 E-value=0.01 Score=47.49 Aligned_cols=53 Identities=21% Similarity=0.249 Sum_probs=27.8
Q ss_pred HHHcCChhHHHHHHHHHhCCCCCCcc-hHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 511 CRVNGNLELGKFAAEKLYGMEPEKLS-NYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 511 ~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
+...|++++|...++++++.+|+++. .|..++.+|...|++++|.+.+++..+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555555555555 555555555555555555555555443
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.97 E-value=0.11 Score=59.59 Aligned_cols=152 Identities=15% Similarity=0.088 Sum_probs=83.9
Q ss_pred hcCCHHHHHH-HhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHH
Q 005305 379 KWGRIEDARH-VFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQ 457 (703)
Q Consensus 379 k~g~~~~A~~-~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 457 (703)
..+++++|.+ ++..++.++ ....++..+...|..++|+++.+. |+. - .......|++++|.++.+
T Consensus 611 ~~~~~~~a~~~~l~~i~~~~--~~~~~~~~l~~~~~~~~a~~~~~~-------~~~-~----f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEGKD--SLTKIARFLEGQEYYEEALNISPD-------QDQ-K----FELALKVGQLTLARDLLT 676 (814)
T ss_dssp HTTCHHHHHHHTGGGCCCHH--HHHHHHHHHHHTTCHHHHHHHCCC-------HHH-H----HHHHHHHTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCCchH--HHHHHHHHHHhCCChHHheecCCC-------cch-h----eehhhhcCCHHHHHHHHH
Confidence 4577777777 554433011 126666667777777777765532 111 1 223345677787777643
Q ss_pred HhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCC----------CCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 458 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPF----------KTTKNMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 458 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
.+ .+...|..+.+++.+.|+++.|++.|.++.. ..+...+..+.......|+.+.|..++.+.
T Consensus 677 ~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~ 749 (814)
T 3mkq_A 677 DE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA 749 (814)
T ss_dssp TC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc
Confidence 22 4556778888888888888888888877641 112222223333344444444444443332
Q ss_pred hCCCCCCcchHHHHHHHHHhCCChHHHHHHHH
Q 005305 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIR 559 (703)
Q Consensus 528 ~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 559 (703)
.-+...+++|.+.|+|++|..+-+
T Consensus 750 --------g~~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 750 --------GDIQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp --------TCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHcCChHHHHHHHH
Confidence 223445566666666666666544
No 217
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.68 E-value=0.0033 Score=64.65 Aligned_cols=237 Identities=13% Similarity=0.099 Sum_probs=143.9
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcC
Q 005305 165 LYMRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGL 244 (703)
Q Consensus 165 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 244 (703)
+.+|+.|..++.+.|++.+|+.-| +...|+..|..+|....+.|.+++-+..+...++..- ++..=+.|+-++++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhh
Confidence 445666666666666666666555 3335556666677766667776666666554443322 233334566666666
Q ss_pred CChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC------------------------CCcccH
Q 005305 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE------------------------KTTVGW 300 (703)
Q Consensus 245 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~------------------------~~~~~~ 300 (703)
+++.+-++++. .|+..-...+.+-+...|.++.|.-+|..+.. .++.+|
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 66554433321 34444445556666666777766666665542 367789
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhc
Q 005305 301 NTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKW 380 (703)
Q Consensus 301 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~ 380 (703)
-.+-.+|...+.+.-|.-.--.+.- .||. ...++.-|-..|.+++-..+++..+.. -......++-|.-.|+|-
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 9999999999988777554433332 2221 234556677788888877777766532 124677888888889885
Q ss_pred C--CHHHHHHHhh-hcCc-------CChhhHHHHHHHHHhcCCHHHHH
Q 005305 381 G--RIEDARHVFD-KMLC-------KNVISWNALIAGYGNHGRGEEAV 418 (703)
Q Consensus 381 g--~~~~A~~~f~-~m~~-------~~~~~~~~li~~~~~~g~~~~A~ 418 (703)
. ++-+=.++|- ++.- .....|.-++-.|.+..+++.|.
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 2 2222223332 2211 24557888888898888888775
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.55 E-value=0.19 Score=57.54 Aligned_cols=153 Identities=14% Similarity=0.150 Sum_probs=101.3
Q ss_pred HHhcCChhHHHH-HHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHHHHHhCCChH
Q 005305 104 LVLNKRYREALE-LFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLLMHVRCGMMI 182 (703)
Q Consensus 104 ~~~~g~~~~A~~-l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~ 182 (703)
....+++++|.+ ++.. ++ +......++..+...|..+.|.++.+. . ..-...+..+|+++
T Consensus 609 ~~~~~~~~~a~~~~l~~------i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPN------VE-GKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLT 669 (814)
T ss_dssp HHHTTCHHHHHHHTGGG------CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHhc------CC-chHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHH
Confidence 667888998877 5422 12 122336777778888888888765531 1 12245567889999
Q ss_pred HHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 005305 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGF 262 (703)
Q Consensus 183 ~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 262 (703)
+|.++.+.+. +...|..+...+.+.|+++.|.+.|..+.. |..+...+...++.+...++-+.+...|.
T Consensus 670 ~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 670 LARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 9999998774 567899999999999999999999998742 33444444446666665555555554441
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHHHHhhc
Q 005305 263 GDNVFVSCALIDMYSKCGSIEDAQGVFDEM 292 (703)
Q Consensus 263 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m 292 (703)
++.-..+|.+.|++++|.+++.++
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 223334455566666666665543
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.52 E-value=0.057 Score=56.57 Aligned_cols=59 Identities=14% Similarity=-0.013 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHh
Q 005305 470 MHYACMIELLGREGLLDEAFALIRGA---------PFKTTK-NMWAALLTACRVNGNLELGKFAAEKLY 528 (703)
Q Consensus 470 ~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~ 528 (703)
.+++.|..+|...|++++|+.++++. +..|+. .+++.|...|...|++++|+..+++++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34445555555555555555554432 112332 245566666666666666666665554
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.51 E-value=0.038 Score=43.93 Aligned_cols=64 Identities=14% Similarity=0.144 Sum_probs=49.3
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchH
Q 005305 475 MIELLGREGLLDEAFALIRGA-PFKT-TKN-MWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538 (703)
Q Consensus 475 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 538 (703)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|++++|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345667788888888888764 2234 456 788888888889999999999999999999887665
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.51 E-value=0.034 Score=48.23 Aligned_cols=65 Identities=14% Similarity=0.027 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHHcC---ChhHHHHHHHHHhCCC-C-CCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 499 TTKNMWAALLTACRVNG---NLELGKFAAEKLYGME-P-EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 499 p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
++..+.-.+..++.+.+ +.++|...++.+++.+ | ++...+..|+-+|.+.|++++|.+.++.+.+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 46666666677777766 5568888888888777 6 4467788888888899999999998888875
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.45 E-value=0.086 Score=55.25 Aligned_cols=67 Identities=12% Similarity=0.000 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhC-----CCCCCc
Q 005305 471 HYACMIELLGREGLLDEAFALIRGA---------PFKTTK-NMWAALLTACRVNGNLELGKFAAEKLYG-----MEPEKL 535 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----~~p~~~ 535 (703)
+++.|..+|...|++++|+.++++. +..|+. .+++.|...|...|++++|+..++++++ +.|+++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444444455555555554444432 112222 2455555566666666666665555542 356554
Q ss_pred ch
Q 005305 536 SN 537 (703)
Q Consensus 536 ~~ 537 (703)
.+
T Consensus 411 ~~ 412 (429)
T 3qwp_A 411 LI 412 (429)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 223
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.22 E-value=0.14 Score=51.73 Aligned_cols=38 Identities=16% Similarity=-0.077 Sum_probs=33.9
Q ss_pred hCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 528 YGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 528 ~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
...+|.++.+|..+...+...|++++|...++++...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 35678889999999998888899999999999998876
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.97 E-value=0.051 Score=52.56 Aligned_cols=87 Identities=11% Similarity=0.133 Sum_probs=68.8
Q ss_pred hHHHHHHHHh-CCCCCC---HHHHHHHHHHHHH-----cCChhHHHHHHHHHhCCCCCC-cchHHHHHHHHHhC-CChHH
Q 005305 485 LDEAFALIRG-APFKTT---KNMWAALLTACRV-----NGNLELGKFAAEKLYGMEPEK-LSNYVVLLNIYNSS-GKLKE 553 (703)
Q Consensus 485 ~~~A~~~~~~-m~~~p~---~~~~~~ll~a~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~~ 553 (703)
..+|...+++ +...|+ ...|..|...|.. -|+.++|++.+++++++.|+. +.+++..++.|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 3455555555 344565 5578888888887 499999999999999999975 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 005305 554 AAEVIRTLRRKGLRMLPA 571 (703)
Q Consensus 554 A~~~~~~m~~~~~~~~~~ 571 (703)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998766543343
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.47 E-value=0.67 Score=41.18 Aligned_cols=129 Identities=13% Similarity=0.134 Sum_probs=80.1
Q ss_pred hhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHH
Q 005305 375 DFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWE 454 (703)
Q Consensus 375 ~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 454 (703)
+....+|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+... |..++-.|.-.|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888887665 4567888888888888888888888877643 3344444555676665554
Q ss_pred HHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 005305 455 IFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKL 527 (703)
Q Consensus 455 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 527 (703)
+-+.... .| -++.....+.-.|+++++.+++.+...-|... ...+.+|..+.|.++.+.+
T Consensus 82 la~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 4433332 12 23344445566788888888887765432221 1223466666676665544
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.38 E-value=0.24 Score=39.10 Aligned_cols=77 Identities=12% Similarity=0.012 Sum_probs=55.9
Q ss_pred CCchHHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHH
Q 005305 466 KPRAMHYACMIELLGREGL---LDEAFALIRGA-PFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540 (703)
Q Consensus 466 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 540 (703)
++++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|...++++++.+|++ .....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHHH
Confidence 4566777777777765544 68888888773 3445 45677777888899999999999999999999883 33444
Q ss_pred HHH
Q 005305 541 LLN 543 (703)
Q Consensus 541 l~~ 543 (703)
+..
T Consensus 82 i~~ 84 (93)
T 3bee_A 82 IIE 84 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 227
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.11 E-value=1.4 Score=39.05 Aligned_cols=130 Identities=10% Similarity=0.037 Sum_probs=81.7
Q ss_pred HHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHH
Q 005305 172 LLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGK 251 (703)
Q Consensus 172 i~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 251 (703)
.+....+|+++.|.++.+++ .+...|..|.......|+++-|.+.|..... |..+.-.+...|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 44556788888888887766 4567899999999999999988888887642 344444455566666666
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHH
Q 005305 252 QLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEM 323 (703)
Q Consensus 252 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 323 (703)
++-+.....| . +|.-...+.-.|+++++.++|.+.... .--+......|..+.|.++..++
T Consensus 81 kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~r~-----~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGGSL-----PLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTTCH-----HHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCCCh-----HHHHHHHHHcCcHHHHHHHHHHh
Confidence 5555555544 1 233333455568888888887765442 11111122355666666666554
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.92 E-value=0.43 Score=38.43 Aligned_cols=71 Identities=15% Similarity=0.055 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHH
Q 005305 471 HYACMIELLGREGLLDEAFALIRGAP---------FKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVL 541 (703)
Q Consensus 471 ~~~~li~~~~~~g~~~~A~~~~~~m~---------~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 541 (703)
-+..|...+.+.|+++.|...|+..- ..+...++..|..++.+.|+++.|...++++++++|++..+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 33445555555555555555554310 123455778888888899999999999999999999886654443
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.59 E-value=0.58 Score=38.96 Aligned_cols=65 Identities=14% Similarity=-0.011 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHHcCChh---HHHHHHHHHhCCC-C-CCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 499 TTKNMWAALLTACRVNGNLE---LGKFAAEKLYGME-P-EKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 499 p~~~~~~~ll~a~~~~g~~~---~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
|+..+--.+..++.+..+.. +|..+++.++..+ | ........|+-++.+.|++++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 34443334444444444333 3666666666554 3 2344555666677777777777777776664
No 230
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.25 E-value=0.28 Score=54.60 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=50.3
Q ss_pred HHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 509 TACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 509 ~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
.-|...|+++.|..+++++....|++-.+|..|+.+|...|+|+.|.-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 345678999999999999999999999999999999999999999999999985
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=90.77 E-value=1.5 Score=37.88 Aligned_cols=75 Identities=12% Similarity=0.004 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHhhHHhcC---CHHHHHHHhhhcCcCC-----hhhHHHHHHHHHhcCCHHHHHHHHH
Q 005305 351 AKQAHAGLVRHGFGLDIVANSALVDFYSKWG---RIEDARHVFDKMLCKN-----VISWNALIAGYGNHGRGEEAVELFE 422 (703)
Q Consensus 351 a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~m~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~ 422 (703)
+++-|....+.|. ++..+...+.-++.+.+ +++++..+|+...+.+ ...+-.+.-+|.+.|++++|.+.++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3333444444332 34444444444455544 3345555554442221 2233334455566666666666666
Q ss_pred HHHH
Q 005305 423 QMLL 426 (703)
Q Consensus 423 ~m~~ 426 (703)
.+++
T Consensus 96 ~lL~ 99 (152)
T 1pc2_A 96 GLLQ 99 (152)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6665
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=90.18 E-value=7.5 Score=32.59 Aligned_cols=84 Identities=11% Similarity=0.007 Sum_probs=51.7
Q ss_pred hcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 005305 379 KWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQS 458 (703)
Q Consensus 379 k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 458 (703)
+||++......+-.+. .+..-.+..+..+..+|.-++-.+++..+.. ..+|+...+..+.+||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4555555554444432 2333445556667777777777777777433 2466777777777777777777777777777
Q ss_pred hHhhcCC
Q 005305 459 MSRDHKI 465 (703)
Q Consensus 459 m~~~~~~ 465 (703)
+-+ .|+
T Consensus 151 AC~-kG~ 156 (172)
T 1wy6_A 151 ACK-KGE 156 (172)
T ss_dssp HHH-TTC
T ss_pred HHH-hhh
Confidence 766 454
No 233
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.95 E-value=6 Score=33.51 Aligned_cols=66 Identities=14% Similarity=-0.002 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHhCCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 498 KTTKNMWAALLTACRVNG---NLELGKFAAEKLYGMEPE-KLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 498 ~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
.|+..+--.+..+..+.. +..+|..+++.++...|. .......|+-+|.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 345444444455555444 345677777777776664 344566777788888888888888888775
No 234
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=89.91 E-value=2.4 Score=40.91 Aligned_cols=86 Identities=14% Similarity=0.132 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHcCCCC-chHHHHHHHhhHHh-----cCCHHHHHHHhhhcC--cC--ChhhHHHHHHHHHhc-CCHHH
Q 005305 348 LEHAKQAHAGLVRHGFGL-DIVANSALVDFYSK-----WGRIEDARHVFDKML--CK--NVISWNALIAGYGNH-GRGEE 416 (703)
Q Consensus 348 ~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~k-----~g~~~~A~~~f~~m~--~~--~~~~~~~li~~~~~~-g~~~~ 416 (703)
...++..++++++....- +-..+..|...|.+ -|+.++|++.|++.. .| +..++......+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 344555555555543221 24567777777777 377777777777763 23 366666667777764 77888
Q ss_pred HHHHHHHHHHcCCC--cCH
Q 005305 417 AVELFEQMLLNGMR--PNH 433 (703)
Q Consensus 417 A~~l~~~m~~~g~~--p~~ 433 (703)
|.+.+++.+..... |+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHcCCCCCCCCh
Confidence 88888888776555 554
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=88.79 E-value=1.4 Score=35.18 Aligned_cols=65 Identities=15% Similarity=0.042 Sum_probs=53.1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHhCC-------CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhC
Q 005305 500 TKNMWAALLTACRVNGNLELGKFAAEKLYGM-------EPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRK 564 (703)
Q Consensus 500 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 564 (703)
+..-.-.|...+...|+++.|...++++++. .+..+..|..|+.+|.+.|++++|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3444557788889999999999999988753 2334567999999999999999999999998753
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.32 E-value=40 Score=38.44 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=13.3
Q ss_pred HHHHHH-HHhcCChhHHHHHHHHH
Q 005305 98 CSQIEK-LVLNKRYREALELFEIL 120 (703)
Q Consensus 98 ~~~li~-~~~~g~~~~A~~l~~~m 120 (703)
|..++. +.+.++.+.+.++|...
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l 256 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKL 256 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555 55556666666666554
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.62 E-value=3.4 Score=35.41 Aligned_cols=94 Identities=5% Similarity=0.027 Sum_probs=59.4
Q ss_pred CcccHHHHHH-HHhcCCh------hHHHHHHHHHHHcCCCCCChhh----HHHHHHHH---hccCChHHHHHHHHHHHHh
Q 005305 94 SAGICSQIEK-LVLNKRY------REALELFEILEFEGGFDVGSST----YDALISAC---IGLRSIREVKRVFSYMLST 159 (703)
Q Consensus 94 ~~~~~~~li~-~~~~g~~------~~A~~l~~~m~~~~~~~p~~~t----~~~ll~~~---~~~~~~~~a~~l~~~~~~~ 159 (703)
|.-+|=..+. .-+.|++ ++.+++|++.... ++|+... |..+.--| ...++.+.|+++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 6667888888 7778999 8888999988775 5776421 11111111 1236778888888888765
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHcc
Q 005305 160 GFEPDLYMRNRVLLMHVRCGMMIDARRLFDE 190 (703)
Q Consensus 160 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 190 (703)
+-.- ..+|......-.+.|++..|++++..
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 2222 44555555555666777777766653
No 238
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.60 E-value=28 Score=33.99 Aligned_cols=167 Identities=9% Similarity=0.010 Sum_probs=100.0
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHH----HHHhHHcCCCCChhhHHHHHHHHh
Q 005305 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLL----FLDLWEEFSDCGSRTFATMIRASA 242 (703)
Q Consensus 167 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~ 242 (703)
.+.++..-|.+.+++++|+.++..- ...+.+.|+...|-++ .+-+.+.+++++..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4556777788889999999886432 2345666777666554 444456778888887777777765
Q ss_pred cCCChH-HHHHHHHHHH----HhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHc---CC
Q 005305 243 GLELIS-VGKQLHSCAL----KMG--FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALH---GY 312 (703)
Q Consensus 243 ~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~---g~ 312 (703)
....-+ .-.++...++ +.| -..|+.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+... |.
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC
Confidence 533211 1233333333 333 1247788889999999999999999888633323455565555555544 44
Q ss_pred cHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 005305 313 SEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359 (703)
Q Consensus 313 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 359 (703)
..++- .+.-..++. +...+++..|..++....
T Consensus 184 ~~e~d--------------lf~~RaVL~-yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 184 DSTVA--------------EFFSRLVFN-YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHH--------------HHHHHHHHH-HHHTTBHHHHHHHHHHHH
T ss_pred cchHH--------------HHHHHHHHH-HHHhcCHHHHHHHHHHHH
Confidence 43321 111122222 334566777776666544
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=84.88 E-value=5.5 Score=33.03 Aligned_cols=33 Identities=15% Similarity=-0.028 Sum_probs=25.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhCCCCCCcchH
Q 005305 506 ALLTACRVNGNLELGKFAAEKLYGMEPEKLSNY 538 (703)
Q Consensus 506 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 538 (703)
.|.-++.+.|+++.|++..+.+++.+|+|..+.
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 455677888888888888888888888875443
No 240
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.11 E-value=52 Score=35.75 Aligned_cols=115 Identities=9% Similarity=-0.001 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHHHcC-CCcCHH--HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHH
Q 005305 412 GRGEEAVELFEQMLLNG-MRPNHV--TFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEA 488 (703)
Q Consensus 412 g~~~~A~~l~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 488 (703)
.+.+.|..+|......+ +.+... ....+.......+...++...+..... ..++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 37789999998886543 222221 122222233334434566666666543 123333334444555578999999
Q ss_pred HHHHHhCCCCC-CHHHHHH-HHHHHHHcCChhHHHHHHHHHhC
Q 005305 489 FALIRGAPFKT-TKNMWAA-LLTACRVNGNLELGKFAAEKLYG 529 (703)
Q Consensus 489 ~~~~~~m~~~p-~~~~~~~-ll~a~~~~g~~~~a~~~~~~~~~ 529 (703)
...|+.|+..+ +..-|.- +..+....|+.++|...++++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999997543 2222221 22355678999999999999875
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.87 E-value=4.2 Score=32.01 Aligned_cols=64 Identities=17% Similarity=0.180 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHH
Q 005305 413 RGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478 (703)
Q Consensus 413 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 478 (703)
+.-+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+.++.+.+ +...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHHH
Confidence 4456667777777778899999999999999999999999999999877443 345567777653
No 242
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=82.52 E-value=21 Score=39.06 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=42.9
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHh---
Q 005305 303 IIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSK--- 379 (703)
Q Consensus 303 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k--- 379 (703)
....+.-.|+++.|++.+.+. -..|.+.+...+.-+.-.+- ...++..-. + .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~~--~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTKK--P-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccCC--C-cc-cccHHHHHHHHHHHhh
Confidence 444556689999999987644 35566666666655443332 111111100 0 11 2235667777765
Q ss_pred cCCHHHHHHHhhhcC
Q 005305 380 WGRIEDARHVFDKML 394 (703)
Q Consensus 380 ~g~~~~A~~~f~~m~ 394 (703)
..+..+|.+.|--+.
T Consensus 369 ~td~~~Al~Y~~li~ 383 (661)
T 2qx5_A 369 YSDPRVAVEYLVLIT 383 (661)
T ss_dssp TTCHHHHHHHHHGGG
T ss_pred cCCHHHHHHHHHHHh
Confidence 577888887766653
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.68 E-value=43 Score=33.03 Aligned_cols=167 Identities=11% Similarity=0.029 Sum_probs=99.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHH----HHhHHcCCCCChhhHHHHHHHHh
Q 005305 167 MRNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLF----LDLWEEFSDCGSRTFATMIRASA 242 (703)
Q Consensus 167 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~ 242 (703)
.+.++..-|.+.+++++|+.++-. -...+.+.|+...|-++- +-+.+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566778889999999987632 233456667766655554 45556788888888877777776
Q ss_pred cCCChH-HHHHHHHHHH----HhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHH
Q 005305 243 GLELIS-VGKQLHSCAL----KMG--FGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEE 315 (703)
Q Consensus 243 ~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 315 (703)
....-+ .-..+...++ +.| -.-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 655422 1223333333 333 234677888888999999999999888853222223566555555544443222
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 005305 316 ALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLV 359 (703)
Q Consensus 316 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 359 (703)
+ |.+.-..+|. |...+++..|..++....
T Consensus 186 ~--------------dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 186 A--------------PLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp H--------------HHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 2 2222223332 334566777766555444
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.52 E-value=8.8 Score=33.45 Aligned_cols=29 Identities=17% Similarity=0.054 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 005305 469 AMHYACMIELLGREGLLDEAFALIRGAPF 497 (703)
Q Consensus 469 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 497 (703)
.+.---+...|.+.|+.++|+.+++.+|.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 33434455667777888888888887765
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=80.96 E-value=17 Score=28.42 Aligned_cols=86 Identities=10% Similarity=0.003 Sum_probs=60.2
Q ss_pred CChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005305 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324 (703)
Q Consensus 245 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 324 (703)
..-++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||.+.|-++.. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345667777666666552 33333333455678999999999999999999999988866 45677788887777777
Q ss_pred HCCCCCCHhhH
Q 005305 325 DSGVKMDHFTF 335 (703)
Q Consensus 325 ~~g~~pd~~t~ 335 (703)
..| .|....|
T Consensus 97 ~sg-~p~~q~F 106 (116)
T 2p58_C 97 RSQ-DPRIQTF 106 (116)
T ss_dssp TCC-CHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 665 3444344
No 246
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.73 E-value=44 Score=32.61 Aligned_cols=167 Identities=13% Similarity=0.042 Sum_probs=99.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHH----HHHHHHCCCCCCHhhHHHHHHHHhc
Q 005305 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDL----YYEMRDSGVKMDHFTFSMIIRICTR 344 (703)
Q Consensus 269 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~pd~~t~~~ll~a~~~ 344 (703)
+.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.++++|......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 445666678888888888876542 2234556776665554 4444556788888777777776655
Q ss_pred cCCHH-HHHHHHHHHHH----cC--CCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhc---CCH
Q 005305 345 LASLE-HAKQAHAGLVR----HG--FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNH---GRG 414 (703)
Q Consensus 345 ~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~---g~~ 414 (703)
...-+ .=..+...+++ .| ..-++.....+...|.+.|++.+|+.-|-.-...|...+-.|+.-+... |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 33111 11333344443 32 2237788889999999999999999877633323455555555444443 433
Q ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 415 EEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 415 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
.++ |...-.++| -|.-.|++..|..+|+...+
T Consensus 185 ~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 185 STV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred chH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 332 111112222 34567788888888887654
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.81 E-value=16 Score=28.51 Aligned_cols=86 Identities=9% Similarity=-0.001 Sum_probs=61.2
Q ss_pred CChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHH
Q 005305 245 ELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMR 324 (703)
Q Consensus 245 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 324 (703)
..-++|..|-+.+...+- ...+--.-+..+...|++++|..+.+...-||.+.|-++.. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 345667777666666552 33333333455678999999999999999999999988866 46788888888887887
Q ss_pred HCCCCCCHhhH
Q 005305 325 DSGVKMDHFTF 335 (703)
Q Consensus 325 ~~g~~pd~~t~ 335 (703)
..| .|....|
T Consensus 96 ~sg-~p~~q~F 105 (115)
T 2uwj_G 96 GSS-DPALADF 105 (115)
T ss_dssp TCS-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 776 4444444
No 248
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.74 E-value=20 Score=28.04 Aligned_cols=87 Identities=21% Similarity=0.133 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 347 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
.-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||.++|-++-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 34556666555555442 22222222344667899999999999999999999987754 477888888888878777
Q ss_pred cCCCcCHHHHHH
Q 005305 427 NGMRPNHVTFLA 438 (703)
Q Consensus 427 ~g~~p~~~t~~~ 438 (703)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 65 555555544
No 249
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.10 E-value=21 Score=27.95 Aligned_cols=87 Identities=17% Similarity=0.138 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 005305 347 SLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLL 426 (703)
Q Consensus 347 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 426 (703)
.-++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||.++|-++-.. +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 34555555555555442 222222223445678999999999999999999999877543 66777788777777766
Q ss_pred cCCCcCHHHHHH
Q 005305 427 NGMRPNHVTFLA 438 (703)
Q Consensus 427 ~g~~p~~~t~~~ 438 (703)
+| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 65 455555543
No 250
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=78.01 E-value=46 Score=36.99 Aligned_cols=54 Identities=11% Similarity=-0.057 Sum_probs=47.1
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcC
Q 005305 239 RASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMS 293 (703)
Q Consensus 239 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 293 (703)
.-|...|+++.|.++-.+++..- +.+-.+|..|...|.+.|+++.|+-.++.++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 44667889999999999888875 6678899999999999999999999999987
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=76.94 E-value=4.3 Score=41.59 Aligned_cols=60 Identities=18% Similarity=0.107 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHh
Q 005305 504 WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRR 563 (703)
Q Consensus 504 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 563 (703)
...++.++...|+.+++...+..++..+|-+-..|..|+.+|.++|+..+|.+.++..++
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667777889999999999999999999888999999999999999999999988753
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=76.72 E-value=8.6 Score=32.10 Aligned_cols=45 Identities=18% Similarity=0.099 Sum_probs=24.6
Q ss_pred hHHHHHHHHHhCCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 518 ELGKFAAEKLYGMEPE-KLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 518 ~~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
.+|..+++.+++.+|. ....+..|+-++.+.|++++|.+..+.+.
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455555555554442 23445555556666666666666666555
No 253
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.23 E-value=10 Score=31.56 Aligned_cols=63 Identities=17% Similarity=0.184 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHH
Q 005305 414 GEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478 (703)
Q Consensus 414 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 478 (703)
.-+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+.++.+. .+....|..+++-
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lqE 131 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQE 131 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHHH
Confidence 44566666777777889999999999999999999999999999998744 4446678777653
No 254
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=75.07 E-value=39 Score=28.93 Aligned_cols=66 Identities=17% Similarity=0.099 Sum_probs=43.1
Q ss_pred HcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHh
Q 005305 309 LHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVD 375 (703)
Q Consensus 309 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 375 (703)
..++.++|.++|+.++..+-+. ...+.....--.+.|++..|+++++..+..+..|....-.++-+
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 3478888888888887653232 33333333334678899999999999988877665544444433
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=74.13 E-value=13 Score=37.87 Aligned_cols=68 Identities=13% Similarity=0.142 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHh----hcCCCCchHH
Q 005305 403 ALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR----DHKIKPRAMH 471 (703)
Q Consensus 403 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 471 (703)
.++..+...|++++|+..+..+.... .-+...+..++.++.+.|+..+|.+.|+...+ +.|+.|...+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34556666777777777776666531 22556677777777777777777777665433 3566666654
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.92 E-value=96 Score=32.03 Aligned_cols=312 Identities=11% Similarity=0.054 Sum_probs=145.5
Q ss_pred CChhHHHHHHHHhHHc-----CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH-hCCCCcHHHHHHHHH----HHHhC
Q 005305 210 GDYLEAFLLFLDLWEE-----FSDCGSRTFATMIRASAGLELISVGKQLHSCALK-MGFGDNVFVSCALID----MYSKC 279 (703)
Q Consensus 210 g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~Li~----~y~~~ 279 (703)
|++++|++.+..+.+. ...........++..|...++++........+.+ +|..+. ....++. .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 6788888887776542 2333455677788888888888877666655543 232222 2223332 22222
Q ss_pred CCHH--HHHHHHhhcCC---CCcc-------cHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHhccCC
Q 005305 280 GSIE--DAQGVFDEMSE---KTTV-------GWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICTRLAS 347 (703)
Q Consensus 280 g~~~--~A~~~f~~m~~---~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 347 (703)
...+ .-..+.+.... .-.. ....|...|...|++.+|.+++.++...-...+....
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~------------ 175 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE------------ 175 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH------------
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH------------
Confidence 2222 22222222211 1000 1234556667777777777777776542111111100
Q ss_pred HHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcC--------cCC--hhhHHHHHHHHHhcCCHHHH
Q 005305 348 LEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKML--------CKN--VISWNALIAGYGNHGRGEEA 417 (703)
Q Consensus 348 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--------~~~--~~~~~~li~~~~~~g~~~~A 417 (703)
-+.++...+..|...+++..|..++.++. .++ ..-+..++..+...+++.+|
T Consensus 176 ------------------kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a 237 (445)
T 4b4t_P 176 ------------------KIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEV 237 (445)
T ss_dssp ------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred ------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 01222333444444455544444444431 011 12334445555556666666
Q ss_pred HHHHHHHHHc-CCCcCHHHHH----HHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhc--CChHHHHH
Q 005305 418 VELFEQMLLN-GMRPNHVTFL----AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGRE--GLLDEAFA 490 (703)
Q Consensus 418 ~~l~~~m~~~-g~~p~~~t~~----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~ 490 (703)
-..|.+..+. ...-|...+. .++....-++....-..+......+ ..-++...|..++.+|... .+++.+.+
T Consensus 238 ~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~-~~~~~l~~~~~L~k~f~~~~L~~~~~~~~ 316 (445)
T 4b4t_P 238 AQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND-NNLKKLESQESLVKLFTTNELMRWPIVQK 316 (445)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH-SSCHHHHHHHHHHHHHHHCCSSSHHHHHH
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc-ccccccHHHHHHHHHHHhchHhhhHHHHH
Confidence 6655555431 0111211111 1111111111111112222222221 2235677888888888754 46777777
Q ss_pred HHHhCCC-C-------CCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005305 491 LIRGAPF-K-------TTKNMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLR 562 (703)
Q Consensus 491 ~~~~m~~-~-------p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 562 (703)
.|...-. . ....-|..|......|+- ....+ |-+...+..|+..+.- ..+++++.+..|.
T Consensus 317 ~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl-----~~i~k-----~Ys~I~l~~la~lL~l--~~~evE~~ls~mI 384 (445)
T 4b4t_P 317 TYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNL-----RVISE-----YYSRITLLRLNELLDL--TESQTETYISDLV 384 (445)
T ss_dssp HTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHH-----HHHHH-----HEEEEEHHHHHHHHTS--CHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhhcchhhHHHHHHHHHHHHHHH-----HHHHH-----HhceeeHHHHHHHhCc--CHHHHHHHHHHHH
Confidence 7765311 1 113346666665554431 11111 1123345555555532 4678899999998
Q ss_pred hCCC
Q 005305 563 RKGL 566 (703)
Q Consensus 563 ~~~~ 566 (703)
..|.
T Consensus 385 ~~g~ 388 (445)
T 4b4t_P 385 NQGI 388 (445)
T ss_dssp HHTS
T ss_pred HCCC
Confidence 7664
No 257
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=71.07 E-value=83 Score=30.96 Aligned_cols=166 Identities=13% Similarity=0.073 Sum_probs=97.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHH----HHHHHCCCCCCHhhHHHHHHHHhc
Q 005305 269 SCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLY----YEMRDSGVKMDHFTFSMIIRICTR 344 (703)
Q Consensus 269 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~pd~~t~~~ll~a~~~ 344 (703)
+.++..=|.+.+++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34455667888999998887643 122355567666555443 444556788888877777777665
Q ss_pred cCC--HHHHHHHHHHHHH----cC--CCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHH
Q 005305 345 LAS--LEHAKQAHAGLVR----HG--FGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEE 416 (703)
Q Consensus 345 ~~~--~~~a~~~~~~~~~----~g--~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 416 (703)
... .+. ..+...+++ .| ..-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+...+...
T Consensus 107 ~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 107 FQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp SCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred CCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc-
Confidence 543 222 233334433 33 33477888889999999999999998874322222355544544443333211
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 005305 417 AVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSR 461 (703)
Q Consensus 417 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 461 (703)
.+|...-.++| -|.-.+++..|..+|+...+
T Consensus 185 -------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 -------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 12222222333 34556788888777666543
No 258
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=69.57 E-value=1.6e+02 Score=33.61 Aligned_cols=214 Identities=12% Similarity=0.029 Sum_probs=111.2
Q ss_pred HHhCCCHHHHHHHHhhcCCC----Cc--ccHHHHHHHHHHcCCcHHHHHHHHHHHHCCC--CC---CHhh-HH-H--HHH
Q 005305 276 YSKCGSIEDAQGVFDEMSEK----TT--VGWNTIIAGYALHGYSEEALDLYYEMRDSGV--KM---DHFT-FS-M--IIR 340 (703)
Q Consensus 276 y~~~g~~~~A~~~f~~m~~~----~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p---d~~t-~~-~--ll~ 340 (703)
....|+.+++..+++..... +. ..-..+.-|....|..++++.++.......- .- +... .. . +--
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 44567777888888776542 11 1223334456667777788887777654311 00 1111 11 1 111
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCC-CchHHHHHHHhhHHhcCCHHHHHHHhhhcCc--CC-hhhHHHHHHHHHhcCCHHH
Q 005305 341 ICTRLASLEHAKQAHAGLVRHGFG-LDIVANSALVDFYSKWGRIEDARHVFDKMLC--KN-VISWNALIAGYGNHGRGEE 416 (703)
Q Consensus 341 a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~ 416 (703)
++...++- .+...+..++...-. ......-+|.-.|.-.|+-+....++..+.+ .+ +.-.-++.-|+...|+.+.
T Consensus 464 a~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22233343 344444444442111 0012223444556667887777777765532 22 2222233345557788888
Q ss_pred HHHHHHHHHHcCCCcCH-HHHH---HHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHH
Q 005305 417 AVELFEQMLLNGMRPNH-VTFL---AVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALI 492 (703)
Q Consensus 417 A~~l~~~m~~~g~~p~~-~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 492 (703)
+..+.+.+... +|. +-|. ++..+|+..|+.....+++..+..+ ...+......+.-++.-.|+.+.+.+++
T Consensus 543 ~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 543 ADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888888763 233 3333 3345677888987777788888762 2233333222223333467766666676
Q ss_pred HhC
Q 005305 493 RGA 495 (703)
Q Consensus 493 ~~m 495 (703)
+.+
T Consensus 618 ~~L 620 (963)
T 4ady_A 618 QLL 620 (963)
T ss_dssp TTG
T ss_pred HHH
Confidence 544
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=66.90 E-value=28 Score=27.43 Aligned_cols=63 Identities=16% Similarity=0.119 Sum_probs=44.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 005305 109 RYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLL 173 (703)
Q Consensus 109 ~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~ 173 (703)
+.-+..+-++.+...+ .-|+.....+.+++|.+.+++..|.++++-+...- .....+|..+++
T Consensus 25 D~~e~rrglN~l~~~D-lVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYD-LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSS-BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3445666666666667 78888899999999999999999999888776432 233445666554
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=66.75 E-value=36 Score=40.27 Aligned_cols=168 Identities=8% Similarity=-0.074 Sum_probs=98.4
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCCh
Q 005305 168 RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELI 247 (703)
Q Consensus 168 ~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 247 (703)
...++..+.+.|..+.|+++..-.+. +..+--.+...|...|++++|.+.|.+.- .|+..+..... ..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa-~~~~~~~~l~~----------~~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFA----------VL 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CSCTTCCCSCS----------SH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHh-hhhcccchhhh----------hh
Confidence 34455566667777777776655543 44333445677888899999999997652 23322211100 00
Q ss_pred HHHHHHHHHHHHhC--CCCcHHHHHHHHHHHHhCCCHHHHHHHHhh----cCCCCc----ccHHHHHHHHHHcCCcHHHH
Q 005305 248 SVGKQLHSCALKMG--FGDNVFVSCALIDMYSKCGSIEDAQGVFDE----MSEKTT----VGWNTIIAGYALHGYSEEAL 317 (703)
Q Consensus 248 ~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~----m~~~~~----~~~~~li~~~~~~g~~~~A~ 317 (703)
.. ...+.... ...-..-|..++..+.+.+.++.+.++-.. ....+. ..|..+..++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 01111110 011233466677777777777776655432 222221 25888899999999999999
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHhccCCHHHHHH
Q 005305 318 DLYYEMRDSGVKMDHFTFSMIIRICTRLASLEHAKQ 353 (703)
Q Consensus 318 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 353 (703)
..+-.+.....+ ...+..++..++..+..+.-..
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhC
Confidence 998888766444 3456677777777777665443
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=62.78 E-value=72 Score=27.72 Aligned_cols=115 Identities=10% Similarity=0.049 Sum_probs=63.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHccCCC-----CCcc-------cHHHHHHHHHhCCChhHHHHHHHHhHHcC-CCCCh-h
Q 005305 167 MRNRVLLMHVRCGMMIDARRLFDEMPE-----RNLV-------SCNMIIAGMIDSGDYLEAFLLFLDLWEEF-SDCGS-R 232 (703)
Q Consensus 167 ~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~d~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-~ 232 (703)
.+-.-+..+...|.++.|+-+-+-+.. +++. +...+.+++...+++..|...|++.++.. ..+.. .
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 344455666677888888776654321 3431 34456677778888888888888754311 11111 1
Q ss_pred hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhCCCHHHHHHHHhhcCC
Q 005305 233 TFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCALIDMYSKCGSIEDAQGVFDEMSE 294 (703)
Q Consensus 233 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 294 (703)
+..++-. ...... ......+..+.-.+..+|.+.++.++|+.+++.++.
T Consensus 102 ~~~~~~~----~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 102 VRPSTGN----SASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred ccccccc----cCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 1111100 000000 011234566666788888888888888888888875
No 262
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=62.76 E-value=42 Score=39.74 Aligned_cols=63 Identities=11% Similarity=-0.056 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHhCCCC-CCc----chHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 504 WAALLTACRVNGNLELGKFAAEKLYGMEP-EKL----SNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 504 ~~~ll~a~~~~g~~~~a~~~~~~~~~~~p-~~~----~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
|.-++..+.+++.++.+.+..+.+++..+ ++. ..|..+.+.+...|++++|...+-.++....
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 45566666677777777777766664332 221 1466667777777888887777776665444
No 263
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=59.20 E-value=64 Score=30.20 Aligned_cols=54 Identities=20% Similarity=0.311 Sum_probs=23.4
Q ss_pred HhCCCHHHHHHHHhhcC----CCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCC
Q 005305 277 SKCGSIEDAQGVFDEMS----EKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331 (703)
Q Consensus 277 ~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 331 (703)
+..|+.+-...+++... ..|...++.+..+ +..++.....++++.+.+.|..++
T Consensus 156 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCC
Confidence 34555555555554421 1122233333333 234444444455555555555443
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.58 E-value=68 Score=30.41 Aligned_cols=50 Identities=18% Similarity=0.173 Sum_probs=30.2
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHHHHHHHHh
Q 005305 443 CSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIRG 494 (703)
Q Consensus 443 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 494 (703)
..+.|+++++++....-++ .-+-|...-..|+..|+-.|+++.|.+-++.
T Consensus 7 ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~ 56 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQ 56 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3455666666666665555 3345555666666666666666666655543
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=54.41 E-value=19 Score=34.19 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=32.8
Q ss_pred HHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCCC
Q 005305 479 LGREGLLDEAFALIRG-APFKT-TKNMWAALLTACRVNGNLELGKFAAEKLYGMEPE 533 (703)
Q Consensus 479 ~~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~ 533 (703)
+.+.|.+++|++.... +..+| |...-..|+..++..|++++|..-++...+++|+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 4456666666655543 33334 4444455666666667777776666666666665
No 266
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=52.67 E-value=1.1e+02 Score=28.50 Aligned_cols=14 Identities=14% Similarity=0.019 Sum_probs=6.7
Q ss_pred HhcCChHHHHHHHH
Q 005305 480 GREGLLDEAFALIR 493 (703)
Q Consensus 480 ~~~g~~~~A~~~~~ 493 (703)
++.|+.+-+..+++
T Consensus 227 ~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 227 VEKKHLGLVQRLLE 240 (285)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34455554444444
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=52.52 E-value=1e+02 Score=25.67 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=14.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHhCCCCCCc
Q 005305 507 LLTACRVNGNLELGKFAAEKLYGMEPEKL 535 (703)
Q Consensus 507 ll~a~~~~g~~~~a~~~~~~~~~~~p~~~ 535 (703)
|.-|+.+.|+++.|++..+.+++.+|+|.
T Consensus 84 LAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 84 LTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 33344455555555555555555555553
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=52.44 E-value=60 Score=27.09 Aligned_cols=62 Identities=16% Similarity=0.123 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcchHHHHHH
Q 005305 110 YREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYMRNRVLL 173 (703)
Q Consensus 110 ~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~Li~ 173 (703)
.-+..+-++.+...+ .-|+.......|++|.+.+|+..|.++++-++..- .+...+|..+++
T Consensus 69 ~wElrrglN~l~~~D-lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYD-LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSS-BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 345566666666677 78999999999999999999999999998876542 334556766654
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=51.65 E-value=1.3e+02 Score=26.95 Aligned_cols=106 Identities=9% Similarity=0.197 Sum_probs=67.9
Q ss_pred HHHHHHHhCC-CCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHh--CCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005305 487 EAFALIRGAP-FKTTKN---MWAALLTACRVNGNLELGKFAAEKLY--GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRT 560 (703)
Q Consensus 487 ~A~~~~~~m~-~~p~~~---~~~~ll~a~~~~g~~~~a~~~~~~~~--~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 560 (703)
.+...|...+ .+.|+. .|-..+..| ..++...+..++..+. ++.-.-+..|...+..+...|++++|.++++.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444332 244554 444444433 2444667788887776 56666677899999999999999999999998
Q ss_pred HHhCCCccCCceeEEEECCEEEEEEecCcCCcchHHHHHHHHHHHHHHHHcCcccCCC
Q 005305 561 LRRKGLRMLPACSWIEVKKQPHVFLSGDQSHVQTKEIYRKVDRMMLEISKHGYVPEEK 618 (703)
Q Consensus 561 m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~p~~~ 618 (703)
-.+++-. | .+.......+...+|.+.+++.|..
T Consensus 141 GI~~~A~------------------------P-~~rL~~~~~~F~~R~~~~~~~~~~~ 173 (202)
T 3esl_A 141 GAENNCR------------------------P-YNRLLRSLSNYEDRLREMNIVENQN 173 (202)
T ss_dssp HHHTTCB------------------------S-HHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred HHHcCCc------------------------c-HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 8776543 2 1233444567778888888754433
No 270
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=50.96 E-value=2.7e+02 Score=30.26 Aligned_cols=47 Identities=15% Similarity=0.086 Sum_probs=30.1
Q ss_pred CcccHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhc
Q 005305 94 SAGICSQIEKLVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIG 142 (703)
Q Consensus 94 ~~~~~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~ 142 (703)
+.+.|-.+--+.|.|++++|.++.++.... +.--...|...+..++.
T Consensus 152 g~p~Wa~IyY~LR~G~~~~A~e~~~~~~~~--~~~~d~~F~~~l~~~~~ 198 (661)
T 2qx5_A 152 GVPIWALIFYLLRAGLIKEALQVLVENKAN--IKKVEQSFLTYFKAYAS 198 (661)
T ss_dssp TEEHHHHHHHHHTTTCHHHHHHHHHHTGGG--C-----CHHHHHHHC--
T ss_pred CcccHHHHHHHHhcCCHHHHHHHHHHhhhh--HhhhhHHHHHHHHHHHh
Confidence 345787666699999999999998776543 12222467777777764
No 271
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=49.08 E-value=1.4e+02 Score=26.26 Aligned_cols=80 Identities=10% Similarity=0.088 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHHHHHHHHh
Q 005305 264 DNVFVSCALIDMYSKCGSIEDAQGVFDEMSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFSMIIRICT 343 (703)
Q Consensus 264 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 343 (703)
+|..+....+..+.+.|..+....+.+.+..+|...-...+.++...|.. ++...+.++.. .++...-...+.++.
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~ 101 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALG 101 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444444444444444433333344444444443333344444444433 23333333332 234444444444444
Q ss_pred ccCC
Q 005305 344 RLAS 347 (703)
Q Consensus 344 ~~~~ 347 (703)
..++
T Consensus 102 ~~~~ 105 (201)
T 3ltj_A 102 QIGD 105 (201)
T ss_dssp HHCC
T ss_pred HhCc
Confidence 4444
No 272
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=48.10 E-value=2.9e+02 Score=29.77 Aligned_cols=432 Identities=11% Similarity=0.004 Sum_probs=210.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCCcchHHHHHHHHHhCCChH
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTG-FEPDLYMRNRVLLMHVRCGMMI 182 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g-~~~~~~~~~~Li~~y~~~g~~~ 182 (703)
..+.|++..+..+...+.... +.| -..|..+..... ..... ++-..+.+.. .+.....-+.-+..+.+.+++.
T Consensus 16 a~~~~~~~~~~~l~~~l~~~p-L~~-yl~y~~l~~~l~-~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~ 89 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYP-LYP-YLEYRQITDDLM-NQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWR 89 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTST-THH-HHHHHHHHHTGG-GCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHhhcCCC-cHH-HHHHHHHHhCcc-cCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHH
Confidence 566777776666655443221 211 123333332221 11233 4444444421 1222233345566677788888
Q ss_pred HHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHH--HHHHHHHHHh
Q 005305 183 DARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVG--KQLHSCALKM 260 (703)
Q Consensus 183 ~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a--~~~~~~~~~~ 260 (703)
.....+.. +..+...-.....+....|+..+|....+.+...|.. .+.....++..+.+.|.+... .+=...+...
T Consensus 90 ~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~ 167 (618)
T 1qsa_A 90 GLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQDPLAYLERIRLAMKA 167 (618)
T ss_dssp HHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Confidence 88887766 4344444555677778888888888888877665532 344555566665544433221 1111112211
Q ss_pred C-----------CCCcH-HHHHHHHHHHHhCCCHHHHHHHHhhcCCCCcc---cHHHHHHHHHHcCCcHHHHHHHHHHHH
Q 005305 261 G-----------FGDNV-FVSCALIDMYSKCGSIEDAQGVFDEMSEKTTV---GWNTIIAGYALHGYSEEALDLYYEMRD 325 (703)
Q Consensus 261 g-----------~~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~ 325 (703)
| ++++. .....++..+.+-..+ ....... .++.. .....+.-+.+ .+.+.|..+|.....
T Consensus 168 ~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~ 242 (618)
T 1qsa_A 168 GNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQ 242 (618)
T ss_dssp TCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhh
Confidence 1 11111 1122222222211111 1111111 11111 11112222333 377889888888765
Q ss_pred CCCCCCHhhHHHHH----HHHhccCCHHHHHHHHHHHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCCh--h
Q 005305 326 SGVKMDHFTFSMII----RICTRLASLEHAKQAHAGLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNV--I 399 (703)
Q Consensus 326 ~g~~pd~~t~~~ll----~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~--~ 399 (703)
.. ..+......+- ......+....+...+....... .+..+..-.+..-.+.|+++.|...|+.|..... .
T Consensus 243 ~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~ 319 (618)
T 1qsa_A 243 AQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKD 319 (618)
T ss_dssp HT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSH
T ss_pred cc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccH
Confidence 43 22333222222 22333442444555555544432 2333344444555677999999999999865321 1
Q ss_pred h-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCc-h---H--HH
Q 005305 400 S-WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPR-A---M--HY 472 (703)
Q Consensus 400 ~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~---~--~~ 472 (703)
- .-=+..++...|+.++|..+|+++.. +. +|-.++.+ .+.|..-. . ......+. . . ..
T Consensus 320 r~~YW~~ra~~~~g~~~~a~~~~~~~a~----~~--~fYg~lAa-~~Lg~~~~-------~-~~~~~~~~~~~~~~~~~~ 384 (618)
T 1qsa_A 320 EWRYWQADLLLERGREAEAKEILHQLMQ----QR--GFYPMVAA-QRIGEEYE-------L-KIDKAPQNVDSALTQGPE 384 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT----SC--SHHHHHHH-HHTTCCCC-------C-CCCCCCSCCCCHHHHSHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHhc----CC--ChHHHHHH-HHcCCCCC-------C-CCCCCChhHHhhhccChH
Confidence 1 12234567788999999999998864 22 34444422 23332100 0 00001110 0 0 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHhCCCC---CCcchHHHHHHHHHhCC
Q 005305 473 ACMIELLGREGLLDEAFALIRGAPFKTTKNMWAALLTACRVNGNLELGKFAAEKLYGMEP---EKLSNYVVLLNIYNSSG 549 (703)
Q Consensus 473 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g 549 (703)
..-+..+.+.|...+|...+..+....+......+.......|..+.+.....+....+. .-+..|..++.-+++.-
T Consensus 385 ~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~~y~~~i~~~a~~~ 464 (618)
T 1qsa_A 385 MARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGK 464 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCCTTHHHHHHHHTTS
T ss_pred HHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCcchHHHHHHHHHHc
Confidence 123456778899999987776543233444444555555678888888776654432220 01234666777777666
Q ss_pred ChHHHHHHHHHHHhCCC
Q 005305 550 KLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 550 ~~~~A~~~~~~m~~~~~ 566 (703)
.++.+.-.--...+.+.
T Consensus 465 gv~~~ll~Ai~~~ES~f 481 (618)
T 1qsa_A 465 EIPQSYAMAIARQESAW 481 (618)
T ss_dssp SSCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCCC
Confidence 66655433223344444
No 273
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.42 E-value=85 Score=32.23 Aligned_cols=95 Identities=12% Similarity=-0.022 Sum_probs=53.9
Q ss_pred HHHHHHhhHHhcCCHHHHHHHhhhcCc------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCcCHHHHH--
Q 005305 369 ANSALVDFYSKWGRIEDARHVFDKMLC------KNVISWNALIAGYGNHGRGEEAVELFEQMLL---NGMRPNHVTFL-- 437 (703)
Q Consensus 369 ~~~~Li~~y~k~g~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~-- 437 (703)
+...+.+.|.++|+++.|.+.|.++.. .-+..|-..|..+...+++..+.....+... .+-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 445566777777777777777776632 1233555566677777777777777766543 22233322111
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhc
Q 005305 438 AVLSACSRSGLSERGWEIFQSMSRDH 463 (703)
Q Consensus 438 ~ll~a~~~~g~~~~a~~~~~~m~~~~ 463 (703)
.-...+...+++.+|.+.|-.....+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11122345667777777776665533
No 274
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=45.92 E-value=1.5e+02 Score=25.92 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=7.5
Q ss_pred CcHHHHHHHHHHHHhCCC
Q 005305 264 DNVFVSCALIDMYSKCGS 281 (703)
Q Consensus 264 ~~~~~~~~Li~~y~~~g~ 281 (703)
++..+....+.++.+.+.
T Consensus 119 ~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp SSHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344444444444444443
No 275
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=44.87 E-value=6.6 Score=24.64 Aligned_cols=18 Identities=33% Similarity=0.743 Sum_probs=12.7
Q ss_pred cCCccccc-cccccCCCCC
Q 005305 685 DASRFHHF-KDGMCSCGDY 702 (703)
Q Consensus 685 d~~~~h~~-~~g~csc~~~ 702 (703)
.|-.-|.. .+|.||||-|
T Consensus 11 ~CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 11 ACPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCTTSCCCTTSSBTTTTB
T ss_pred CCCCCceecCCceeccccc
Confidence 34455555 5899999976
No 276
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.81 E-value=74 Score=32.72 Aligned_cols=96 Identities=11% Similarity=-0.028 Sum_probs=68.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHH----
Q 005305 400 SWNALIAGYGNHGRGEEAVELFEQMLLNGMRPNH--VTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYA---- 473 (703)
Q Consensus 400 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~---- 473 (703)
++..+..-|.+.|+.++|.+.|.++...-..+.. ..+..++..+...+++..+..+..++.....-.++...-+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667888999999999999999999975333333 5677788899999999999999988865332233332222
Q ss_pred HHHHHHHhcCChHHHHHHHHhC
Q 005305 474 CMIELLGREGLLDEAFALIRGA 495 (703)
Q Consensus 474 ~li~~~~~~g~~~~A~~~~~~m 495 (703)
+-.-.+...+++.+|.+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 1122234568899988877553
No 277
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.38 E-value=3.2e+02 Score=27.99 Aligned_cols=116 Identities=8% Similarity=0.044 Sum_probs=63.1
Q ss_pred cCChhHHHHHHHHHHHcC----CCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCCcchHHHHH----HHHHh
Q 005305 107 NKRYREALELFEILEFEG----GFDVGSSTYDALISACIGLRSIREVKRVFSYMLST-GFEPDLYMRNRVL----LMHVR 177 (703)
Q Consensus 107 ~g~~~~A~~l~~~m~~~~----~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~-g~~~~~~~~~~Li----~~y~~ 177 (703)
.|++++|++-+..+.+.. ...........++..|...++++...+.+..+.+. |..+. ....++ .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhc
Confidence 367788888776665431 12334556778888899999998887777666543 32221 222333 22222
Q ss_pred CCChH--HHHHHHccCCC---CC-------cccHHHHHHHHHhCCChhHHHHHHHHhHH
Q 005305 178 CGMMI--DARRLFDEMPE---RN-------LVSCNMIIAGMIDSGDYLEAFLLFLDLWE 224 (703)
Q Consensus 178 ~g~~~--~A~~~f~~m~~---~d-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 224 (703)
....+ .-..+.+.... .- ......|...|-..|++.+|.+++.++..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~ 165 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQV 165 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 22222 22223322221 10 11224466677777888888888777754
No 278
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=39.51 E-value=2e+02 Score=25.39 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=7.3
Q ss_pred CcHHHHHHHHHHHHhCCC
Q 005305 264 DNVFVSCALIDMYSKCGS 281 (703)
Q Consensus 264 ~~~~~~~~Li~~y~~~g~ 281 (703)
++..+....+.++.+.|.
T Consensus 124 ~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 333444444444444433
No 279
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=39.39 E-value=2e+02 Score=25.38 Aligned_cols=18 Identities=6% Similarity=-0.020 Sum_probs=7.7
Q ss_pred CCHhhHHHHHHHHhccCC
Q 005305 330 MDHFTFSMIIRICTRLAS 347 (703)
Q Consensus 330 pd~~t~~~ll~a~~~~~~ 347 (703)
+|...-...+.++...++
T Consensus 93 ~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 344444444444444443
No 280
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=39.00 E-value=1.7e+02 Score=24.56 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=23.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHH
Q 005305 506 ALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYV 539 (703)
Q Consensus 506 ~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 539 (703)
-|.-++.+.|++++|++..+.+++.+|+|..+-.
T Consensus 82 yLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 82 YLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3445667777777777777777777887755433
No 281
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.10 E-value=1.1e+02 Score=25.24 Aligned_cols=64 Identities=14% Similarity=0.226 Sum_probs=41.3
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcCcCC---hhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCcCH
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKMLCKN---VISWNALIAGYGNHGR--GEEAVELFEQMLLNGMRPNH 433 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~ 433 (703)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. -+....++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 4567788888899999999998886552 2334444455555432 34567777777766654433
No 282
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=36.16 E-value=3.5e+02 Score=27.21 Aligned_cols=88 Identities=7% Similarity=-0.016 Sum_probs=51.0
Q ss_pred CCchHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHH
Q 005305 466 KPRAMHYACMIELLGREGLLDEAFALIRGAP--FKTTKNM---WAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVV 540 (703)
Q Consensus 466 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~---~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 540 (703)
.|....+..++.+| +.|++.+..++++... +..|... |..|....+. ..+.++. .|-.......
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~--------~~L~~i~--~pYsrIsl~~ 321 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLE--------QNLCRII--EPYSRVQVAH 321 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHH--------HHHHHHH--TTCSEEEHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--------HHHHHHh--HhhceeeHHH
Confidence 45555566666654 4567766666666542 3345542 2233322222 2233333 3555566777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 541 LLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 541 l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
++..+.- ..++++..+-+|...|.
T Consensus 322 iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 322 VAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred HHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 7776643 67899999999988775
No 283
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=35.14 E-value=35 Score=25.20 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=30.2
Q ss_pred cccccCccCCCCCcccHHHHHHHHhcCC-hhHHHHHHHHHH
Q 005305 82 ESSLPDTQMKKPSAGICSQIEKLVLNKR-YREALELFEILE 121 (703)
Q Consensus 82 ~~~f~~~~~~~p~~~~~~~li~~~~~g~-~~~A~~l~~~m~ 121 (703)
..+++++|...|++-+|+-+..+.+.+. ..+++.+.+++.
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~iy 63 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEVY 63 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 7899999999999999999999555554 456666655543
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=34.26 E-value=2.4e+02 Score=25.27 Aligned_cols=83 Identities=11% Similarity=0.094 Sum_probs=41.4
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChh---hHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcc--hHHHHHHHHHhC
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSS---TYDALISACIGLRSIREVKRVFSYMLSTGFEPDLY--MRNRVLLMHVRC 178 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~---t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~--~~~~Li~~y~~~ 178 (703)
.++.|+.+....+++.+.+.+ ..++.. -.+ .+...+..|+.+ +.+.+++.|..++.. .....+...+..
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQGG-RELDIYNNLRQT-PLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT-CCSCCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCCcccccCCC-HHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 666777776666666555544 333321 122 233334455554 444445556544322 112334444556
Q ss_pred CChHHHHHHHccCC
Q 005305 179 GMMIDARRLFDEMP 192 (703)
Q Consensus 179 g~~~~A~~~f~~m~ 192 (703)
|+.+-...+++...
T Consensus 90 ~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 90 RSPTCLRALLDSAA 103 (241)
T ss_dssp TCHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHcCC
Confidence 67666666665543
No 285
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=33.65 E-value=2e+02 Score=24.99 Aligned_cols=55 Identities=13% Similarity=0.304 Sum_probs=24.0
Q ss_pred HhCCCHHHHHHHHhhc-CC---CCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCC
Q 005305 277 SKCGSIEDAQGVFDEM-SE---KTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMD 331 (703)
Q Consensus 277 ~~~g~~~~A~~~f~~m-~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 331 (703)
++.|+.+-+..+++.- .. +|..-++.+..+.........-.++.+.+.+.|..++
T Consensus 114 ~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 3455555555555443 11 2333344444433222222333445555555555544
No 286
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=32.66 E-value=1.6e+02 Score=25.62 Aligned_cols=81 Identities=10% Similarity=0.086 Sum_probs=36.0
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCcch--HHHHHHHHHhCCCh
Q 005305 104 LVLNKRYREALELFEILEFEGGFDVGSSTYDALISACIGLRSIREVKRVFSYMLSTGFEPDLYM--RNRVLLMHVRCGMM 181 (703)
Q Consensus 104 ~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~--~~~Li~~y~~~g~~ 181 (703)
.+..|+.+....++..-...- -..|..-.+.+.. .+..|+.+ +.+.+++.|..++... ..+.+...+..|+.
T Consensus 12 A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 85 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNI-AVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGRT 85 (201)
T ss_dssp HHHTTCHHHHHHHHTCTTCCT-TCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHhccHHHHHHHHHcCCCCC-CCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 556666665555543221000 0112222223333 33445543 4444445565444321 12234444566777
Q ss_pred HHHHHHHcc
Q 005305 182 IDARRLFDE 190 (703)
Q Consensus 182 ~~A~~~f~~ 190 (703)
+-+..+++.
T Consensus 86 ~~~~~Ll~~ 94 (201)
T 3hra_A 86 EILAYMLKH 94 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777666643
No 287
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.49 E-value=75 Score=29.48 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCChh-------hHHHHHHHHh--ccCChHHHHHHHHHHHHhC--------
Q 005305 98 CSQIEKLVLNKRYREALELFEILEFEGGFDVGSS-------TYDALISACI--GLRSIREVKRVFSYMLSTG-------- 160 (703)
Q Consensus 98 ~~~li~~~~~g~~~~A~~l~~~m~~~~~~~p~~~-------t~~~ll~~~~--~~~~~~~a~~l~~~~~~~g-------- 160 (703)
.+.+...++.|+.+....+++.+.+.+ ..++.. -.+.|..++. +.|+.+-++.+++.-...+
T Consensus 6 ~~~L~~A~~~g~~~~v~~ll~~l~~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 84 (260)
T 3jxi_A 6 RPILFDIVSRGSPDGLEGLLSFLLTHK-KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS 84 (260)
T ss_dssp HHHHHHHHHHTCGGGGTTHHHHHHHHT-CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcc
Confidence 344444778888888777877776666 444432 2234444432 5577776666666543311
Q ss_pred -CCCCcchHHHHHHHHHhCCChHHHHHHHccCCC
Q 005305 161 -FEPDLYMRNRVLLMHVRCGMMIDARRLFDEMPE 193 (703)
Q Consensus 161 -~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 193 (703)
+........+.+...+..|+.+-+..+++.-..
T Consensus 85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 010000122334445566777777777665443
No 288
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=32.19 E-value=30 Score=24.20 Aligned_cols=26 Identities=19% Similarity=0.174 Sum_probs=21.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCChh
Q 005305 106 LNKRYREALELFEILEFEGGFDVGSS 131 (703)
Q Consensus 106 ~~g~~~~A~~l~~~m~~~~~~~p~~~ 131 (703)
.+-+++.|+..|.++...|.++|+.+
T Consensus 32 ~~Wd~~~A~~~F~~l~~~~~IP~eAF 57 (59)
T 1oai_A 32 NNWDYTRSAQAFTHLKAKGEIPEVAF 57 (59)
T ss_dssp TTTCHHHHHHHHHHHHHTTCSCGGGG
T ss_pred cCCCHHHHHHHHHHHHHcCCCCHHHh
Confidence 35689999999999988776888765
No 289
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.03 E-value=2.4e+02 Score=29.54 Aligned_cols=146 Identities=10% Similarity=0.043 Sum_probs=0.0
Q ss_pred cccHHHHHH-HHhcCChhHHHHHHHHHHHcCCCCCChhhHHHHH-------HHHhccCChHHHHHHHHHHHHhCCCCCcc
Q 005305 95 AGICSQIEK-LVLNKRYREALELFEILEFEGGFDVGSSTYDALI-------SACIGLRSIREVKRVFSYMLSTGFEPDLY 166 (703)
Q Consensus 95 ~~~~~~li~-~~~~g~~~~A~~l~~~m~~~~~~~p~~~t~~~ll-------~~~~~~~~~~~a~~l~~~~~~~g~~~~~~ 166 (703)
...||.+++ |...+.++.|..+..... ++.+..+-+..+ ....-.+++.+|.+.+....+.-......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a 306 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKS 306 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSC
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhh
Q ss_pred h--------HHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCCChhhHHHHH
Q 005305 167 M--------RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDCGSRTFATMI 238 (703)
Q Consensus 167 ~--------~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 238 (703)
. +..++.++. |++.+-..+-..-.++....|..|..++ +.|+..+-...++.-..
T Consensus 307 ~gfr~~a~K~lI~V~LLl--G~iP~r~lf~q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h~~-------------- 369 (523)
T 4b4t_S 307 LGFLQQSNKLHCCIQLLM--GDIPELSFFHQSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKYKQ-------------- 369 (523)
T ss_dssp SHHHHHHHHHHHHHHHHH--TCCCCHHHHTTTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHH--------------
T ss_pred hhHHHHHHHHHHhHHhhc--CCCCChHHhhchhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHhcc--------------
Q ss_pred HHHhcCCChHHHHHHHHHHHHhCC
Q 005305 239 RASAGLELISVGKQLHSCALKMGF 262 (703)
Q Consensus 239 ~a~~~~~~~~~a~~~~~~~~~~g~ 262 (703)
.+.+.|.+...+++...+.+.++
T Consensus 370 -~F~~Dgty~LI~rLr~~vir~~i 392 (523)
T 4b4t_S 370 -LLLKDDTYQLCVRLRSNVIKTGI 392 (523)
T ss_dssp -HHHHTTCTHHHHHHHHHHHHHHH
T ss_pred -eeccCChhHHHHHHHHHHHHHHH
No 290
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.57 E-value=2.9e+02 Score=24.62 Aligned_cols=82 Identities=15% Similarity=0.094 Sum_probs=45.8
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCCcc--hHHHHHHHHHhCCChHHHHHHHccCCCC---CcccHHHHHHHHHhCCC
Q 005305 137 ISACIGLRSIREVKRVFSYMLSTGFEPDLY--MRNRVLLMHVRCGMMIDARRLFDEMPER---NLVSCNMIIAGMIDSGD 211 (703)
Q Consensus 137 l~~~~~~~~~~~a~~l~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~ 211 (703)
+...+..|+.+..+.+++.+.+.|..++.. ...+.+...+..|+.+-...+++.-..+ |...++.+. ..+..|+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~-~A~~~~~ 91 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH-LACEHRS 91 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH-HHHHcCC
Confidence 444556788888888888777777555432 1233455556778887777777644332 222233333 3345555
Q ss_pred hhHHHHHH
Q 005305 212 YLEAFLLF 219 (703)
Q Consensus 212 ~~~A~~~~ 219 (703)
.+-...++
T Consensus 92 ~~~~~~Ll 99 (241)
T 1k1a_A 92 PTCLRALL 99 (241)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 54433333
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=29.89 E-value=1e+02 Score=26.29 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=40.4
Q ss_pred HHHHHhhHHhcCCHHHHHHHhhhcCcCC---hhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCcC
Q 005305 370 NSALVDFYSKWGRIEDARHVFDKMLCKN---VISWNALIAGYGNHGR--GEEAVELFEQMLLNGMRPN 432 (703)
Q Consensus 370 ~~~Li~~y~k~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 432 (703)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ -+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567888888899999999998886552 2234444445554322 3456677777776665443
No 292
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=29.46 E-value=1.5e+02 Score=27.48 Aligned_cols=86 Identities=19% Similarity=0.107 Sum_probs=45.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc--CCCc----CHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHH
Q 005305 405 IAGYGNHGRGEEAVELFEQMLLN--GMRP----NHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIEL 478 (703)
Q Consensus 405 i~~~~~~g~~~~A~~l~~~m~~~--g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 478 (703)
+..+..+.++++|.++.++..+. ++++ +.......+..-.....-.-+..+.+.+ . . .++.......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~-~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L-S--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H-T--CSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H-h--cCCHHHHHHHHHH
Confidence 55666777778887777765541 2221 1112222222222222222233333333 2 1 4455556677788
Q ss_pred HHhcCChHHHHHHHHh
Q 005305 479 LGREGLLDEAFALIRG 494 (703)
Q Consensus 479 ~~~~g~~~~A~~~~~~ 494 (703)
+.|.|+.++|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 8888999998888743
No 293
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=29.23 E-value=4.3e+02 Score=26.42 Aligned_cols=19 Identities=21% Similarity=0.233 Sum_probs=9.7
Q ss_pred HHHHHhCCChHHHHHHHcc
Q 005305 172 LLMHVRCGMMIDARRLFDE 190 (703)
Q Consensus 172 i~~y~~~g~~~~A~~~f~~ 190 (703)
+...++.|..+-..-+++.
T Consensus 84 L~~A~~~g~~~~v~~Ll~~ 102 (437)
T 1n11_A 84 LHCAARIGHTNMVKLLLEN 102 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhC
Confidence 3344455555555555544
No 294
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.10 E-value=2.9e+02 Score=25.87 Aligned_cols=18 Identities=11% Similarity=-0.177 Sum_probs=7.9
Q ss_pred HHHHHhCCChHHHHHHHc
Q 005305 172 LLMHVRCGMMIDARRLFD 189 (703)
Q Consensus 172 i~~y~~~g~~~~A~~~f~ 189 (703)
+...+..|+.+-+..+++
T Consensus 66 L~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 66 LHQAATLEDTKIVKILLF 83 (285)
T ss_dssp HHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 333344444444444443
No 295
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.96 E-value=2.1e+02 Score=27.71 Aligned_cols=28 Identities=4% Similarity=0.070 Sum_probs=23.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCCCC
Q 005305 168 RNRVLLMHVRCGMMIDARRLFDEMPERN 195 (703)
Q Consensus 168 ~~~Li~~y~~~g~~~~A~~~f~~m~~~d 195 (703)
...++.-|...|+.++|...++++..|.
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~ 33 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 33 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 4567888888999999999999987765
No 296
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=28.60 E-value=2.7e+02 Score=23.64 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=38.3
Q ss_pred HHHHHHHHHh--CCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 519 LGKFAAEKLY--GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 519 ~a~~~~~~~~--~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
.+..++..+. ++.-.-+..|...+..+...|++++|.++++.-.+++-
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 3677777776 44455567799999999999999999999998877654
No 297
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=28.44 E-value=1.3e+02 Score=27.03 Aligned_cols=17 Identities=0% Similarity=-0.169 Sum_probs=7.3
Q ss_pred HHHhCCChHHHHHHHcc
Q 005305 174 MHVRCGMMIDARRLFDE 190 (703)
Q Consensus 174 ~y~~~g~~~~A~~~f~~ 190 (703)
..++.|+.+-+..+++.
T Consensus 48 ~A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 48 WAAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHHTTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHc
Confidence 33444444444444443
No 298
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.27 E-value=3.4e+02 Score=26.22 Aligned_cols=60 Identities=13% Similarity=0.216 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHccCC--HHHHHHHHHHhHh
Q 005305 401 WNALIAGYGNHGRGEEAVELFEQMLLNGMRPNHVTFLAVLSACSRSGL--SERGWEIFQSMSR 461 (703)
Q Consensus 401 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~ 461 (703)
.+.++.-|...|+.++|.+.++++...... ..+....+..+.-+.++ .+....++..+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~ 230 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWK 230 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Confidence 456777888888888888888887521111 12334444445554432 3455666666665
No 299
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=27.85 E-value=2.5e+02 Score=22.97 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=39.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCC---cccHHHHHHHHHHcCC--cHHHHHHHHHHHHCCCCCCH
Q 005305 269 SCALIDMYSKCGSIEDAQGVFDEMSEKT---TVGWNTIIAGYALHGY--SEEALDLYYEMRDSGVKMDH 332 (703)
Q Consensus 269 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~ 332 (703)
.+.++.=|...|+.++|.+.++++..|. .+....+..+.-+.+. .+.+..++..+...|+-+..
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 3567777888888888888888887552 1233334444444332 34566777777766654433
No 300
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=27.28 E-value=1.3e+02 Score=28.40 Aligned_cols=87 Identities=6% Similarity=0.040 Sum_probs=40.6
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHhCCCCCCcchHHHHHHHHHhCCChHHH
Q 005305 476 IELLGREGLLDEAFALIRGAPFKTTK-NMWAALLTACRVNGNLELGKFAAEKLYGMEPEKLSNYVVLLNIYNSSGKLKEA 554 (703)
Q Consensus 476 i~~~~~~g~~~~A~~~~~~m~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A 554 (703)
+...+..|+.+-+.-+++.-....+. .-+ +.+......|+.+..+.+.+.-...+..+..-....+..-++.|+.
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~--- 208 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIPSTFDLAILL-SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDI--- 208 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCTTCCCSTHH-HHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCH---
T ss_pred HHHHHHcCCHHHHHHHHhCCCccccccCCc-cHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCH---
Confidence 34445667766665555543322222 223 3334445677777777766654433322211111111222344554
Q ss_pred HHHHHHHHhCCCc
Q 005305 555 AEVIRTLRRKGLR 567 (703)
Q Consensus 555 ~~~~~~m~~~~~~ 567 (703)
++.+.+.+.|..
T Consensus 209 -~~v~~Ll~~gad 220 (285)
T 3kea_A 209 -EMLQALFKYDIN 220 (285)
T ss_dssp -HHHHHHTTSCBC
T ss_pred -HHHHHHHHcCCC
Confidence 344555566654
No 301
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.94 E-value=3.3e+02 Score=24.37 Aligned_cols=89 Identities=17% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHhC---CChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCC-----hHHHHHHHHHHHHhCCCCcHHHHHHHH
Q 005305 202 IIAGMIDS---GDYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLEL-----ISVGKQLHSCALKMGFGDNVFVSCALI 273 (703)
Q Consensus 202 li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~~~~~~~~~g~~~~~~~~~~Li 273 (703)
+|+++-++ .+++.|+-.+-+|.+.| .|....-..++-+.-..|. +..+...++.....|++.-.....-.+
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 95 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEARIPLADVV 95 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHHhCCCHHHHHHHHhh
Q 005305 274 DMYSKCGSIEDAQGVFDE 291 (703)
Q Consensus 274 ~~y~~~g~~~~A~~~f~~ 291 (703)
-.++.+-+-..+...++.
T Consensus 96 iyLA~aPKSNs~y~A~~~ 113 (204)
T 2r9g_A 96 VDLCLSPKSNSAYMALDA 113 (204)
T ss_dssp HHHHHSCCCCHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHH
No 302
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=26.08 E-value=2e+02 Score=28.08 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=7.7
Q ss_pred HhCCCHHHHHHHHhh
Q 005305 277 SKCGSIEDAQGVFDE 291 (703)
Q Consensus 277 ~~~g~~~~A~~~f~~ 291 (703)
+..|+.+-+..+++.
T Consensus 181 ~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 181 MEFRNREALDLMMDT 195 (364)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhc
Confidence 345555555555543
No 303
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.55 E-value=2.4e+02 Score=23.93 Aligned_cols=63 Identities=19% Similarity=0.209 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhhcCCCC---cccHHHHHHHHHHcCC--cHHHHHHHHHHHHCCCCCC
Q 005305 269 SCALIDMYSKCGSIEDAQGVFDEMSEKT---TVGWNTIIAGYALHGY--SEEALDLYYEMRDSGVKMD 331 (703)
Q Consensus 269 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd 331 (703)
.+.++.=|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4567777878888888888888886552 1233334444443222 3456677777776665443
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=24.36 E-value=2.7e+02 Score=25.65 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=14.6
Q ss_pred HHHHHHhCCChhHHHHHHHHhH
Q 005305 202 IIAGMIDSGDYLEAFLLFLDLW 223 (703)
Q Consensus 202 li~~~~~~g~~~~A~~~~~~m~ 223 (703)
-++.+....++++|.++.++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3556666777777777776654
No 305
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=24.12 E-value=4.7e+02 Score=24.91 Aligned_cols=286 Identities=11% Similarity=-0.017 Sum_probs=0.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCCcch---HHHHHHHHHhCCChHHHHHHHccCCCCCcccHHHHHHHHHhCC
Q 005305 134 DALISACIGLRSIREVKRVFSYMLSTGFEPDLYM---RNRVLLMHVRCGMMIDARRLFDEMPERNLVSCNMIIAGMIDSG 210 (703)
Q Consensus 134 ~~ll~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~---~~~Li~~y~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 210 (703)
++.|...++.|+++..+.+++. |..++... ..+-+...++.|+.+-+.-+++.-..++....+..........
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~----Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHC----CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Q ss_pred ChhHHHHHHHHhHHcCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCcHHHHHH--------HHHHHHhCCCH
Q 005305 211 DYLEAFLLFLDLWEEFSDCGSRTFATMIRASAGLELISVGKQLHSCALKMGFGDNVFVSCA--------LIDMYSKCGSI 282 (703)
Q Consensus 211 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--------Li~~y~~~g~~ 282 (703)
........+..-....+......-.+.+...+..|..+....++..-.............. -+...++.|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~ 181 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Q ss_pred HHHHHHHhh----cCCCCcccHHHHHHHHHHcCCcHHHHHHHHHHHHCCCCCCHhhHH--HHHHHHhccCCHHHHHHHHH
Q 005305 283 EDAQGVFDE----MSEKTTVGWNTIIAGYALHGYSEEALDLYYEMRDSGVKMDHFTFS--MIIRICTRLASLEHAKQAHA 356 (703)
Q Consensus 283 ~~A~~~f~~----m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~~~~ 356 (703)
+-+..++++ +..+|....+.+..+.. .+.......+.+.+.+.|..+|..... +.|...+..|..+....++.
T Consensus 182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~-~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~ 260 (337)
T 4g8k_A 182 EVLKILLDEMGADVNACDNMGRNALIHALL-SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 260 (337)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCHHHHHHH-HSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHhccCCCcCccCCCCCcHHHHHHH-HcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Q ss_pred HHHHcCCCCchHHHHHHHhhHHhcCCHHHHHHHhhhcCcCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCcC
Q 005305 357 GLVRHGFGLDIVANSALVDFYSKWGRIEDARHVFDKMLCKNVISWNALIAGYGNHGRGEEAVELFEQMLLNGMRPN 432 (703)
Q Consensus 357 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 432 (703)
.--..--..|..-.+.|.-+ ++.|+.+-+.-+++.--.+|..+ .+..-++.|+.+ +.+-+++.|-.||
T Consensus 261 ~~~~~vn~~d~~G~TpL~~A-~~~g~~~iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 261 QEHIEINDTDSDGKTALLLA-VELKLKKIAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKED 328 (337)
T ss_dssp STTCCTTCBCTTSCBHHHHH-HHTTCHHHHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC-
T ss_pred hcCCcccCcCCCCCCHHHHH-HHcCCHHHHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCC
No 306
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=23.84 E-value=5.9e+02 Score=26.70 Aligned_cols=68 Identities=15% Similarity=0.027 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHH-----HHHHhCCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCC
Q 005305 498 KTTKNMWAALLTACRVNGNLELGKFA-----AEKLYGMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKG 565 (703)
Q Consensus 498 ~p~~~~~~~ll~a~~~~g~~~~a~~~-----~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~ 565 (703)
.+|......|-.-+..+|..++-.++ ..-+.+..|++......|-.-|.+.|++-+|.+++-.+-..+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 34555555555556666665543321 111223456777778888889999999999999999988764
No 307
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=23.61 E-value=4.4e+02 Score=24.34 Aligned_cols=18 Identities=11% Similarity=-0.213 Sum_probs=7.2
Q ss_pred CchHHHHHHHhhHHhcCC
Q 005305 365 LDIVANSALVDFYSKWGR 382 (703)
Q Consensus 365 ~~~~~~~~Li~~y~k~g~ 382 (703)
++..+-...+.+..+.|+
T Consensus 140 ~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 140 KSTNVRRATAFAISVIND 157 (280)
T ss_dssp SCHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 344444444444444443
No 308
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.97 E-value=1.2e+02 Score=27.91 Aligned_cols=52 Identities=12% Similarity=-0.107 Sum_probs=28.3
Q ss_pred HHhCCChhHHHHHHHHhHHcCCCCChhh-------HHHHHHHHh--cCCChHHHHHHHHHH
Q 005305 206 MIDSGDYLEAFLLFLDLWEEFSDCGSRT-------FATMIRASA--GLELISVGKQLHSCA 257 (703)
Q Consensus 206 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~a~~--~~~~~~~a~~~~~~~ 257 (703)
.++.|+.+....+++.+.+.|..++... .+.|..|+. +.|+.+-.+.+++.-
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3566777766666666666665555332 233333332 456666666555543
No 309
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.90 E-value=1.6e+02 Score=28.99 Aligned_cols=14 Identities=14% Similarity=0.180 Sum_probs=6.6
Q ss_pred hcCChHHHHHHHHh
Q 005305 481 REGLLDEAFALIRG 494 (703)
Q Consensus 481 ~~g~~~~A~~~~~~ 494 (703)
+.|+.+-+.-+++.
T Consensus 253 ~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 253 RAAMVLLTKELLQK 266 (364)
T ss_dssp HTCCHHHHHHHHHH
T ss_pred HhChHHHHHHHHHc
Confidence 44555544444443
No 310
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.61 E-value=3.5e+02 Score=23.93 Aligned_cols=50 Identities=8% Similarity=-0.024 Sum_probs=22.6
Q ss_pred HHhCCChHHHHHHHccCCC---CCcccHHHHHHHHHhCCChhHHHHHHHHhHHcCCCC
Q 005305 175 HVRCGMMIDARRLFDEMPE---RNLVSCNMIIAGMIDSGDYLEAFLLFLDLWEEFSDC 229 (703)
Q Consensus 175 y~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 229 (703)
.++.|+++....+++.-.. +|...++ .+...+..|+.+ +++.+.+.|..+
T Consensus 16 A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~~~~~ 68 (240)
T 3eu9_A 16 ATQYGIYERCRELVEAGYDVRQPDKENVT-LLHWAAINNRID----LVKYYISKGAIV 68 (240)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCT
T ss_pred HHHcCChHHHHHHHHcCCCcCCCCCCCCC-HHHHHHHhCCHH----HHHHHHHcCCcc
Confidence 3455666666655554322 2222222 333445566643 334444455433
No 311
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=22.40 E-value=54 Score=24.99 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=33.3
Q ss_pred cchHHHHHHHHHHHHHHHHcCcccCCCccCCCchHHHHHHHhhhhHHHHHHhcc
Q 005305 592 VQTKEIYRKVDRMMLEISKHGYVPEEKTLLPDVDEQEQRVLSYHSEKLAVAFGL 645 (703)
Q Consensus 592 ~~~~~~~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~e~la~~~~l 645 (703)
+...+|...+++-..+++..|+.||...+-.. ...+.+|.+-..||=
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G~e-------ayef~~e~v~~e~g~ 59 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFGRE-------AYNFLSNLLKKEMEE 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEECHH-------HHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEcHH-------HHHHHHHHHhHhhcc
Confidence 44567888899999999999999998765321 223445566666664
No 312
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=22.28 E-value=3.8e+02 Score=26.81 Aligned_cols=43 Identities=12% Similarity=0.019 Sum_probs=24.0
Q ss_pred HHHHHHHhCCChHHHHHHHccCCCCC---cccHHHHHHHHHhCCChh
Q 005305 170 RVLLMHVRCGMMIDARRLFDEMPERN---LVSCNMIIAGMIDSGDYL 213 (703)
Q Consensus 170 ~Li~~y~~~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~ 213 (703)
+.+...+..|+++-...+++.-..++ ...++.| ...+..|+.+
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L-~~A~~~g~~~ 61 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPL-HMAARAGHTE 61 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHH-HHHHHHTCHH
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHH
Confidence 34555667788888888887644433 2233333 3335556644
No 313
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=22.05 E-value=3.8e+02 Score=23.06 Aligned_cols=47 Identities=11% Similarity=0.091 Sum_probs=37.3
Q ss_pred HHHHHHHHh--CCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHhCCC
Q 005305 520 GKFAAEKLY--GMEPEKLSNYVVLLNIYNSSGKLKEAAEVIRTLRRKGL 566 (703)
Q Consensus 520 a~~~~~~~~--~~~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~~~ 566 (703)
+..++..+. ++.-.-+..|...+..|...|++.+|.++++.-.+++-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 555666665 45556677899999999999999999999998877664
No 314
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.64 E-value=1.5e+02 Score=24.83 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=41.1
Q ss_pred HHHHHcCCCcCHHHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCchHHHHHHHHHHHhcCChHH
Q 005305 422 EQMLLNGMRPNHVTFLAVLSACSRSGLSERGWEIFQSMSRDHKIKPRAMHYACMIELLGREGLLDE 487 (703)
Q Consensus 422 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 487 (703)
+.|.+.|++++..=. .++..+...+..-.|.++++.+.+ .+...+..|..--++.+...|-+.+
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Glv~~ 74 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEG-KFPNMSVATVYNNLRVFRESGLVKE 74 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGG-GCTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHH-hCCCCChhhHHHHHHHHHHCCCEEE
Confidence 345667877766332 344444445555668888888876 3444556666666788888887764
Done!