Query 005306
Match_columns 703
No_of_seqs 303 out of 867
Neff 8.6
Searched_HMMs 46136
Date Thu Mar 28 21:23:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005306.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005306hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2001 Gamma-tubulin complex, 100.0 4E-114 9E-119 913.6 61.3 663 3-682 34-716 (734)
2 KOG2065 Gamma-tubulin ring com 100.0 2.6E-75 5.5E-80 591.1 45.5 590 57-703 1-665 (679)
3 PF04130 Spc97_Spc98: Spc97 / 100.0 6.8E-68 1.5E-72 605.1 46.9 505 60-586 1-542 (542)
4 KOG2000 Gamma-tubulin complex, 100.0 2.5E-53 5.4E-58 477.2 38.2 519 51-613 201-762 (879)
5 KOG4344 Uncharacterized conser 100.0 6E-28 1.3E-32 253.5 35.5 601 51-700 289-1114(1121)
6 PF14609 GCP5-Mod21: gamma-Tub 33.1 4.1E+02 0.0088 29.5 10.6 63 51-127 179-245 (653)
7 COG5415 Predicted integral mem 27.0 3.5E+02 0.0077 26.4 8.0 86 149-246 11-96 (251)
8 KOG2000 Gamma-tubulin complex, 25.7 1.1E+02 0.0023 37.0 5.3 121 459-588 589-711 (879)
9 KOG4344 Uncharacterized conser 22.9 48 0.001 37.5 1.8 121 135-261 451-581 (1121)
10 PF15027 DUF4525: Domain of un 22.3 4E+02 0.0087 23.9 6.9 60 101-162 37-102 (138)
11 PLN00032 DNA-directed RNA poly 22.2 1E+02 0.0022 24.6 2.9 48 546-594 10-57 (71)
12 PF14966 DNA_repr_REX1B: DNA r 21.3 5.2E+02 0.011 22.1 9.1 73 105-177 2-80 (97)
13 PF08673 RsbU_N: Phosphoserine 20.6 3.1E+02 0.0068 22.3 5.6 44 561-607 31-74 (77)
No 1
>KOG2001 consensus Gamma-tubulin complex, DGRIP84/SPC97 component [Cytoskeleton]
Probab=100.00 E-value=4.2e-114 Score=913.64 Aligned_cols=663 Identities=43% Similarity=0.693 Sum_probs=571.3
Q ss_pred CCCCCCCCCcccCCCc-CC-ccccchhhh-----hh-hccc-cccCcccccCCCCCccchHHHHHHHHHHHhcCCCCCce
Q 005306 3 MSYPSTPRWNIERPFL-TG-RFHQETKAA-----SR-FADS-FSNNGAEMAIGCYDAGVQELLVIDDLLSALVGIEGRYI 73 (703)
Q Consensus 3 ~~~p~~p~w~~~~~~~-~~-~~~~~~~~~-----~~-~~~~-~~~~~~~~~~~~~~~~~qE~~lv~dLL~~L~G~~g~~i 73 (703)
++.|..|.|...||++ || .+++..... +. ...+ ..+.....+++.+|.+.||..+++|||+||.|++|+|+
T Consensus 34 i~~~~~s~~~~~rp~~~tG~~~~~s~~~~l~~~~s~r~~~~~~~~~~~~~~is~~~lp~QE~~li~dLl~af~Gv~~ryV 113 (734)
T KOG2001|consen 34 INPKEESELEEKRPALDTGSVQHQSLVSDLVNLLSKRILEGVGIDYFTDYEISDMPLPSQESKLIDDLLYAFVGVEGRYV 113 (734)
T ss_pred cCccccccccccCcCCCcCccchhhhhhccccchhhhhhhccccccccccCcccCCchhHHHHHHHHHHHHHcCCCccee
Confidence 5678889999999999 77 333333211 11 1111 23556677899999999999999999999999999999
Q ss_pred eeccccCcCCCCCC---CCCccceEecCCCCHHHHHHHHHHHHHHhHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHH
Q 005306 74 SIKRRVNHVHGNDT---YDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLD 150 (703)
Q Consensus 74 ~~~~~~~~~~~~~~---~~~~~~f~i~~~~~~sl~~l~~~il~lg~~~~~l~~fv~~~~~~~~g~v~~Al~~~l~~~L~~ 150 (703)
+++. ..+... ......|.|.|+++-++++++++++|+|.+|..+++||+..+.+.+|.|++|+|+|++++|.+
T Consensus 114 ~~Q~----~~~s~~~~~~~~~~~F~v~~~fd~~ir~la~eilpl~~yy~~v~~fie~~s~f~~G~vn~alaaAlr~ll~d 189 (734)
T KOG2001|consen 114 SPQY----MIISEAYEKWIDSIFFMVLPRFDLAIRELAEEILPLASYYLLVQDFIEETSFFEYGQVNHALAAALRELLYD 189 (734)
T ss_pred ecch----hhhhhhhhhhccCcceeeccchhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHH
Confidence 9865 222111 012478999999999999999999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCcHHHHHHhhhhHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 005306 151 YEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQC 230 (703)
Q Consensus 151 y~~~v~~lE~~~~~~~lsL~~L~~~~~~~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~ 230 (703)
|+..|.++|++.+.+.+||++||+|++|++..|+.++..++.+..+.++||++|+.|++++..+.||+.++.++.++++.
T Consensus 190 yy~li~qlE~e~R~~~lslq~L~~y~qP~m~~m~~l~~~~~~~~~~~~~gg~vls~l~~~~~~~~Gd~~a~~ll~~l~r~ 269 (734)
T KOG2001|consen 190 YYELISQLEQELRTNRLSLQDLWFYMQPMMRSMRRLAVAATTTVKKVCKGGAVLSLLQSSIKENLGDRSARMLLKKLLRN 269 (734)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhhccccCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988888889999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHhhceEcCCCCcceeeeCccccccccccccchhhhhccccc-ccCCCcchHHHHHHHHhhhhHHHHHH
Q 005306 231 ASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KDGIPSFLANIAGKILTTGKYLNVMR 309 (703)
Q Consensus 231 ~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~~~~l~~d~~~~~W~~~y~l-~~~vP~Fl~~~a~~Il~~GK~l~~Lr 309 (703)
+++||++|+++||+.|.++|||+||||.++ ...++.+++|+.++||++||+| ++.+|.|+.+.|+|||.||||+||+|
T Consensus 270 as~~Y~~mLe~Wi~~Gii~Dpy~EFmi~d~-~~~k~~l~ed~~d~YW~~RY~ir~dqiP~fL~~~adkIL~tGKYLNVvR 348 (734)
T KOG2001|consen 270 ASQPYCTMLEEWIYQGIINDPYQEFMIYDN-LITKEDLPEDYTDKYWDQRYTIRKDQIPGFLLSEADKILRTGKYLNVVR 348 (734)
T ss_pred hcchHHHHHHHHHhcccccCchHhHhhhhc-chhhhcCchhhhHHHHHHhheechhhcchHHHHHHHHHHHhhhHHHHHH
Confidence 999999999999999999999999999999 7788889999999999999999 78999999999999999999999999
Q ss_pred HhCCCCCccccccccc-cccCCccchHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhHhccCcchHHHHHHHHHHH
Q 005306 310 ECGHSAQVPTSENSKL-LSFGSNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREE 388 (703)
Q Consensus 310 ~~~~~~~~p~~e~~~l-~~f~~~~~~~~~I~~~~~~~s~~ll~ll~~~~~L~~hL~~lk~yfLL~~Gdf~~~f~~~~~~~ 388 (703)
+||+.+++|.+.+... .....+..+.+.|+++|.+|+..++++++++++|..||+++|+||||++|||+.+|+|.+.++
T Consensus 349 eC~~~v~~p~~~n~~~~~~~~~e~~~~e~I~~ay~~A~~~lL~ll~~e~dL~~hLrslK~YfLldQgdF~~~Fld~~~eE 428 (734)
T KOG2001|consen 349 ECGKIVTIPQSSNEINDPADLMESNHEEYIKKAYEFANEILLKLLFEEYDLVGHLRSLKHYFLLDQGDFFVTFLDKAEEE 428 (734)
T ss_pred HhCccCCCCcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 9999998887653211 112234789999999999999999999999999999999999999999999999999999999
Q ss_pred HhccccccCHHHHHHHHHHHHH-hhhccCCCCCCcccceeccccHHHHHHhhhccccccCCCCCCCCCC---CCCcccce
Q 005306 389 LMKQLDEITVEKLQSLLDIALR-STAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQP---VSITGLET 464 (703)
Q Consensus 389 L~~~~~~~~~~~L~~~l~~al~-~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~~~~~~~~---~~~~~~d~ 464 (703)
|.|+.+.+++.+|+++|++|+| .+.+.+||++++++|++++++|+.+++.+..++.... +++...+| ..++|+++
T Consensus 429 L~K~v~~i~p~kLqsLL~laLr~~s~a~~Dp~k~~L~i~~~~~~L~~ql~~~l~ie~~e~-~ans~~dP~~~l~lsGlE~ 507 (734)
T KOG2001|consen 429 LTKNVENISPEKLQSLLDLALREQSEAANDPMKEDLKICVDPTDLITQLSHILAIEPEEE-SANSQADPLEHLDLSGLEA 507 (734)
T ss_pred HhcchhhcCHHHHHHHHHHHHHhhhcccCCchhhheeeeecHhhHHHHHHHHHhcCcccc-ccccccCcchhccccchhh
Confidence 9999999999999999999999 7788899999999999999999999988766553221 12223444 67899999
Q ss_pred EEeeeecCCCcceeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCch-hhHHHHHHHHHHHHHHHHHHHH
Q 005306 465 FSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASG-TAISRSSLLCRSMLKFINSLLH 543 (703)
Q Consensus 465 l~L~Y~v~wPL~lIlt~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~-~~~~~~~~lr~~m~~Fv~~l~~ 543 (703)
++|+|+||||||+||++++|.|||+|||++|.||||+++||.+|..++..|..+..+ .+.++++.||++|++||++|.+
T Consensus 508 faf~Y~vkwPLSlIIsrkal~kYQmLfR~lf~lkhVerqL~~~W~~~~~~r~~~~~~~q~~r~s~~LR~RMl~fiqsi~~ 587 (734)
T KOG2001|consen 508 FAFDYEVKWPLSLIISRKALIKYQMLFRYLFYLKHVERQLCETWQSHSKARSSNTKGAQIVRASFLLRQRMLNFIQSIEY 587 (734)
T ss_pred heeeeccCCceeeeEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999877766554 4567889999999999999999
Q ss_pred HHHHHhchhcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 005306 544 YLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLP-DLLKKVERLKSLCLQYAAATQWLISSSIDLPK 622 (703)
Q Consensus 544 Y~~~~VIe~~w~~~~~~l~~a~~~d~l~~~H~~fL~~i~~~c~L~~~-~l~~~l~~il~~c~~F~~~~~~~~~~~~~~~~ 622 (703)
|++.+||||+|+.|++.+++++++|+|+..|+.|||.|++.|||+.+ .+++.+.++..+|+.||.+++++++.. .-
T Consensus 588 Y~~~eViEp~W~~l~~~l~~a~~vD~Vl~~he~fld~CLk~ClL~~~~~llk~~~kL~~vCl~f~~~~q~~~~~~---~~ 664 (734)
T KOG2001|consen 588 YMTQEVIEPNWHSLEKCLKNARNVDEVLNEHEGFLDTCLKRCLLTLSPLLLKSFSKLYKVCLMFCSFTQKLTQSD---PT 664 (734)
T ss_pred HHHHHhhcchHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHhccc---ch
Confidence 99999999999999999999999999999999999999999999986 889999999999999999999987421 00
Q ss_pred CCCCCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 005306 623 LEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSS 682 (703)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~L~~~ 682 (703)
++...... .+++ ..+ .+ ..+ +.-.+.+.+-+.++++.|++|++.|+..|++.
T Consensus 665 ~~~~~~~~-~~~~-d~~-~k-~~~----t~li~~leei~~~~~~~f~~~l~~L~~rlsk~ 716 (734)
T KOG2001|consen 665 DEEKNSVG-HPQF-DEG-RK-EDD----TLLISKLEEIISNADKNFRDCLKNLLQRLSKF 716 (734)
T ss_pred hhhhcccc-ccch-hhh-hh-hhh----HHHHHHHHHHHHHhHHHHHHHHHHHHHHcccc
Confidence 11100011 0100 000 00 111 11123445667789999999999999999954
No 2
>KOG2065 consensus Gamma-tubulin ring complex protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-75 Score=591.06 Aligned_cols=590 Identities=22% Similarity=0.352 Sum_probs=462.1
Q ss_pred HHHHHHHHhcCCCCCceeeccccCcCCCCCCCCCccceEecCCCCHHHHHHHHHHHHHHhHHHHHHHHh---hhcc----
Q 005306 57 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDASMDLALQEMAKRIFPLCESFVLTGQFV---ESRS---- 129 (703)
Q Consensus 57 lv~dLL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~i~~~~~~sl~~l~~~il~lg~~~~~l~~fv---~~~~---- 129 (703)
||+|||.||.|++|..|.++.+.+.... +.. ++.-++||++++++|++++|..|+.+.+|. ++..
T Consensus 1 MiHeLLLAl~g~~g~~~~~~~R~~GLa~------~~d--~p~FihPsEr~i~~rliklg~~Y~e~~rFtswIrsvTsH~~ 72 (679)
T KOG2065|consen 1 MIHELLLALRGHNGEQLGIKARFNGLAE------TTD--IPQFIHPSEREIFMRLIKLGKVYQEVERFTSWIRSVTSHSS 72 (679)
T ss_pred CHHHHHHHHhCCChhheeehhhcccccc------ccC--CccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 5899999999999999998874321111 011 122468899999999999999998888876 2221
Q ss_pred -----------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCcHHHHHHhhhhHHHHHHHHHHHHHHhhcCC
Q 005306 130 -----------QFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN 197 (703)
Q Consensus 130 -----------~~~~g~v~~Al~~~l~~~L~~y~~~v~~lE~~~~~-~~lsL~~L~~~~~~~~~~l~~L~~i~~~~~~~~ 197 (703)
...+|.|..|+|.+|..+|++|+..|..+|+.+.. ...||..++..+......+..+..++.++...+
T Consensus 73 ~r~~~~s~q~~~~lhg~Ylra~a~Gi~~~L~~Yr~ail~lEq~~Lg~~~~sls~V~~~L~~ff~Lfp~~~~vi~eI~~~~ 152 (679)
T KOG2065|consen 73 GRKSDTSGQLPDSLHGYYLRALAKGIEMALEEYRAAILRLEQYCLGNERNSLSYVYNALYAFFPLFPFMRNVITEIHVLN 152 (679)
T ss_pred cccccccccCCCccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhHHHHHHHHHHHhcc
Confidence 12478999999999999999999999999999865 468999988877777788888889999998889
Q ss_pred CchhhHHHHHHHHHHHccCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceEcCCCCcceeeeCcc--ccccccccccchh
Q 005306 198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKS--LLKESLTQDYDAK 275 (703)
Q Consensus 198 ~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~--~~~~~l~~d~~~~ 275 (703)
.+||+||+.||++ ++|.|.+|..+..++..|..+++.+|..||.+|.+.|+++||||+..+. ++..+.++...++
T Consensus 153 irGcqlL~~l~k~---HCg~p~ir~~l~~~l~~~h~vmy~qLaaWml~Gvl~D~H~EFFIK~q~~~~~d~ss~~ee~~e~ 229 (679)
T KOG2065|consen 153 IRGCQLLHNLHKQ---HCGHPDIRLELAIKLKPVHNVMYSQLAAWMLFGVLDDVHSEFFIKFQPTDAVDGSSFSEEATES 229 (679)
T ss_pred cchhHHHHHHHHh---ccCCCcHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccchheEEeccCCCCCCcccCchhhhhh
Confidence 9999999999996 5899999999999999999999999999999999999999999995432 1111111111110
Q ss_pred hh-----------hcccccc-----cCCCcchHH-HHHHHHhhhhHHHHHHHhCCC-----C--Ccccccc---cccccc
Q 005306 276 YW-----------RQRYSLK-----DGIPSFLAN-IAGKILTTGKYLNVMRECGHS-----A--QVPTSEN---SKLLSF 328 (703)
Q Consensus 276 ~W-----------~~~y~l~-----~~vP~Fl~~-~a~~Il~~GK~l~~Lr~~~~~-----~--~~p~~e~---~~l~~f 328 (703)
.- -+.|.+. ...|.|.+- .+.++|+.|+...+.+.-... . ..|..|+ ..+. +
T Consensus 230 L~vhsLTgi~l~~l~D~rl~~E~nm~a~~~~~sl~~~s~~l~v~~~~s~~~~~R~~~~i~F~~~~~~~~e~eld~dlt-~ 308 (679)
T KOG2065|consen 230 LLVHSLTGIALKNLEDYRLQYEVNMSALPGFFSLVLASKVLFVGQTVSVFKMGRNVKVINFKTDPLAAKEAELDSDLT-Y 308 (679)
T ss_pred hhhcccchhhhhchhhhhHHHHHhhhccccceeeeccccceeeccchHHHhhccceeeeeccCCchhhHHhhccccch-h
Confidence 00 0123331 246777776 888999999988887743211 0 1111111 0010 0
Q ss_pred CC-----------------------ccchHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhHhccCcchHHHHHHHH
Q 005306 329 GS-----------------------NHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIA 385 (703)
Q Consensus 329 ~~-----------------------~~~~~~~I~~~~~~~s~~ll~ll~~~~~L~~hL~~lk~yfLL~~Gdf~~~f~~~~ 385 (703)
|+ ...|...|+..++.|+.+||++++++.+|.+||+.||+|||||+||||+.|++.+
T Consensus 309 G~ll~~~Ed~f~aml~dLk~~~~f~~~~fE~vVd~ir~~va~hLw~l~V~e~DL~gqlk~iKDffLLgrGeffq~F~~~~ 388 (679)
T KOG2065|consen 309 GQLLSGREDEFFAMLVDLKNEDTFNVFRFEKVVDDIRNYVAAHLWELAVNEVDLEGQLKLIKDFFLLGRGEFFQEFCSQM 388 (679)
T ss_pred hhhcCCChHHHHHHHHhhhcCCceeeeeHHHHHHHHHHHHHHHHHHHHHhHHhHHhHHHHHHHHHHhcccHHHHHHHHHH
Confidence 10 0356778999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccccccCHHHHHHHHHHHHHhhhccCCCCCCcccceeccccHHHHHHhhhccccccCCCCCCCCCCCCCcccceE
Q 005306 386 REELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETF 465 (703)
Q Consensus 386 ~~~L~~~~~~~~~~~L~~~l~~al~~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l 465 (703)
...|+.|++..+.++++-.++.|-..+.+..|.|-+.++..+..+.=..+. +..+.+ ++.+......+..|||++
T Consensus 389 ~~~m~tpp~~~tE~dv~v~FqlaAtkt~~~dDkyl~~~sL~~~~~grs~~a---D~~~~~--tGka~ltsdtsvdGWdAl 463 (679)
T KOG2065|consen 389 VGTMETPPEERTEKDVTVSFQLAATKTGITDDKYLDKFSLICQRSGRSEPA---DTSDFN--TGKAFLTSDTSVDGWDAL 463 (679)
T ss_pred HHHhhCCchhhcccccchhhhhhhhhccccccccccceEEEecccCCCCcc---chhhhc--cCcccccCCCCccchhhh
Confidence 999999999888888888899887766666777766666555433200000 000001 011112234568999999
Q ss_pred EeeeecCCCcceeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----CCCchhhHHHHHHHHHHHHHHHHHH
Q 005306 466 SLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARA----FNASGTAISRSSLLCRSMLKFINSL 541 (703)
Q Consensus 466 ~L~Y~v~wPL~lIlt~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~~~~~~r~----~~~~~~~~~~~~~lr~~m~~Fv~~l 541 (703)
.|.|+|.|||+++|||.++.+||.|||||+++||+++.|+.+|...+..+. -...++.++ |++|+.|.+|++|+
T Consensus 464 ~L~Y~v~WPl~llFtp~~~e~yn~VF~yLl~irr~Q~Elq~~WA~qm~r~h~~s~q~~d~~~I~--WRlRnhmaFl~~Nl 541 (679)
T KOG2065|consen 464 SLKYEVEWPLNLLFTPTTIERYNNVFRYLLIIRRYQYELQRVWAKQMWRAHSASDQPPDNKIIT--WRLRNHMAFLLNNL 541 (679)
T ss_pred ceeeEeccchheeechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccch--HHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999987653111 111122333 89999999999999
Q ss_pred HHHHHHHhchhcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 005306 542 LHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLP 621 (703)
Q Consensus 542 ~~Y~~~~VIe~~w~~~~~~l~~a~~~d~l~~~H~~fL~~i~~~c~L~~~~l~~~l~~il~~c~~F~~~~~~~~~~~~~~~ 621 (703)
|||+++||||++|..++..|+..+|++.|..+|+.||.+++.+|||.+.++..++.+|+.+|.+||+++..-.
T Consensus 542 QyYiQVDVlESQf~~L~~~I~s~~DFe~i~~aH~~fLsnllsqsFll~~pV~~~L~~i~~lC~~Fcn~~~Q~~------- 614 (679)
T KOG2065|consen 542 QYYIQVDVLESQFGILMNVIKSRSDFEVIQRAHTVFLSNLLSQSFLLNEPVYGTLLKIFGLCEKFCNHMTQTK------- 614 (679)
T ss_pred heeeeehhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhccC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999998775221
Q ss_pred CCCCCCCCCCChhHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhccccccchHHHHHHHHhccCC
Q 005306 622 KLEEPSDGFSGSEKFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGF 701 (703)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~L~~~~~~~~~~~~L~~lllrld~ 701 (703)
++ .+..+++++.+.+.|+++...|+++|++. ++....+.|+|+|+||||
T Consensus 615 ~P------------------------------~d~~~~el~~l~e~F~~qs~sL~~iL~sv-k~~q~~~~L~qlLLRLdf 663 (679)
T KOG2065|consen 615 DP------------------------------SDDLEDELDQLNESFGVQSASLIQILVSV-KSAQCLGPLSQLLLRLDF 663 (679)
T ss_pred CC------------------------------cccchHHHHHHHHHhhhhHHHHHHHHHHc-cccccccHHHHHHHHhch
Confidence 00 01124678999999999999999999996 678899999999999999
Q ss_pred CC
Q 005306 702 DK 703 (703)
Q Consensus 702 n~ 703 (703)
|+
T Consensus 664 N~ 665 (679)
T KOG2065|consen 664 NC 665 (679)
T ss_pred hH
Confidence 96
No 3
>PF04130 Spc97_Spc98: Spc97 / Spc98 family; InterPro: IPR007259 Members of this family are spindle pole body (SBP) components such as Spc97, Spc98 and gamma-tubulin. The SPB functions as the microtubule-organising centre in yeast, with the microtubule cytoskeleton playing an essential role in chromosome segregation, cellular organisation and vesicle trafficking in eukaryotic cells. In most cells, the centrosome is the primary microtubule-organising centre that nucleates and organises microtubules. Gamma-tubulin localises to centrosomes and is required for microtubule nucleation. In Saccharomyces cerevisiae, gamma-tubulin forms a stable complex with Spc97 and Spc98 [].; GO: 0000226 microtubule cytoskeleton organization, 0000922 spindle pole, 0005815 microtubule organizing center; PDB: 3RIP_A.
Probab=100.00 E-value=6.8e-68 Score=605.12 Aligned_cols=505 Identities=29% Similarity=0.562 Sum_probs=354.5
Q ss_pred HHHHHhcCCCCCceeeccccCcCCCCCCCCCccceEecCC-----CCHHHHHHHHHHHHHHhHHHHHHHHhhhccCC--C
Q 005306 60 DLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDAS-----MDLALQEMAKRIFPLCESFVLTGQFVESRSQF--K 132 (703)
Q Consensus 60 dLL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~i~~~-----~~~sl~~l~~~il~lg~~~~~l~~fv~~~~~~--~ 132 (703)
|+|++|+|++|.+|++++. ...|.+.+. +++++++++++++++|+.|++|++|++..... .
T Consensus 1 dll~~L~G~~s~~f~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~~i~~~g~~~~~l~~~i~~~~~~~~~ 68 (542)
T PF04130_consen 1 DLLYALQGVESTFFIWDKD------------SDRFELRPNISSHLSPPSLRSILNEILEIGTLYRRLRSFIERVSSSSSE 68 (542)
T ss_dssp HHHHHHTT---SSSEEETT-------------TEEE--S----TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTS----S
T ss_pred CHHHHccCCCCceEEEeCC------------CCeEEECCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Confidence 7999999999999999882 246666554 58899999999999999999999999975443 4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCcHHHHHHhhhhHHHHHHHHHHHHHHh----hcCCCchhhHHHHH
Q 005306 133 NGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKA----SANNFTGSAVLNLL 207 (703)
Q Consensus 133 ~g~v~~Al~~~l~~~L~~y~~~v~~lE~~~~~-~~lsL~~L~~~~~~~~~~l~~L~~i~~~~----~~~~~~g~~lL~~L 207 (703)
.|++.+|||++++++|.+|+..|..+|.++.. +.+||..+...++|+...++.|+.++.++ ..+..+|+.||+.|
T Consensus 69 ~~~~~~a~~~~l~~~L~~y~~~l~~le~~~~~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~~~~~~~g~~lL~~L 148 (542)
T PF04130_consen 69 RGPTLQAFASALSSILQEYREFLSELEESILSNGSLSLLQLLAQLRPWFRRLEALADLIQEIIQLSLSQNLRGGQLLSIL 148 (542)
T ss_dssp -SHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TT--HHHHHHHTHHHHHHHHHHHHHHHHH----HHHT--THHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcHHHHHHHH
Confidence 89999999999999999999999999999876 78999999999999999999999999987 33578999999999
Q ss_pred HHHH-HHccCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceEcCCCCcceeeeCccccccccccccchhhhhccccc-cc
Q 005306 208 QSQA-KAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDAKYWRQRYSL-KD 285 (703)
Q Consensus 208 ~~~~-~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~~~~l~~d~~~~~W~~~y~l-~~ 285 (703)
|+.+ ...+|++..++++..|+..+++||+++|..||.+|.+.||++||||+.+++. ....++++|+++|.+ .+
T Consensus 149 ~~~~~~~~~g~~~~~~~l~~ll~~~~~p~l~~l~~Wl~~G~l~D~~~EFfI~~~~~~-----~~~~~~~~w~~~f~l~~~ 223 (542)
T PF04130_consen 149 YERIYHQQSGDPELRKILQRLLNRCLQPYLRMLDSWLYRGELDDPYDEFFIQRNKES-----NSESSEDFWDDRFVLRES 223 (542)
T ss_dssp HHHH---HS--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTS-SSEEE---------------------EEE-GG
T ss_pred HHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCccceeEeecccc-----cCcccchhhccCEEECcc
Confidence 9987 3358999999999999999999999999999999999999999999998321 123467899999999 67
Q ss_pred CCCcchHH-HHHHHHhhhhHHHHHHHhCCCCCcccccccc---------------cccc--CCccchHHHHHHHHHHHHH
Q 005306 286 GIPSFLAN-IAGKILTTGKYLNVMRECGHSAQVPTSENSK---------------LLSF--GSNHHYLECVKVAYEFASG 347 (703)
Q Consensus 286 ~vP~Fl~~-~a~~Il~~GK~l~~Lr~~~~~~~~p~~e~~~---------------l~~f--~~~~~~~~~I~~~~~~~s~ 347 (703)
.+|.|++. +|++|+.+||++++||.|+............ ...+ .....+.+.|++++..+++
T Consensus 224 ~~P~fl~~~~a~~Il~~Gk~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~ 303 (542)
T PF04130_consen 224 RVPSFLSKDLAEKILEIGKSLRLLRSCNPEHEWCSDQELSSDLCLSDKESSESSSLQPFEPLDQDKLESKIESQYKLVNK 303 (542)
T ss_dssp GS-TTS-HHHHHHHHHHHHHHHT------S------TT-SHHH----HHHHHHHHHHT-SS--HHHHHHHHHHHHHHHHH
T ss_pred cCChhcCHHHHHHHHHHHHHHHHHHHhccccccchhccchhhhhhhhhhhhhHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence 89999954 9999999999999999998764321110000 0011 1124677899999999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHhHhccCcchHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHhhhccCCCCCCccccee
Q 005306 348 ELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAADPCHEDLTCSV 427 (703)
Q Consensus 348 ~ll~ll~~~~~L~~hL~~lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~~~~~~~L~~~l~~al~~s~~~~d~~~~~l~~~l 427 (703)
.++++++++++|.+||+++|+||||++|||+..|++.+++.+.++..+.+...++..++.+++.......+...... .
T Consensus 304 ~l~~~l~~~~~l~~~l~~l~~~~Ll~~gdf~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 381 (542)
T PF04130_consen 304 SLLDLLFEDYNLLEHLKALRDFFLLGDGDFADSFLESLFEKLESPSSRSSDSNLNSILQEALRASSADWSDESSNLR-S- 381 (542)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHSS---TTHHHHHHHHHHHHHHHTT---TTSGGGEE-E-
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHhCccccccchhhhh-h-
Confidence 99999999999999999999999999999999999999999999888888888888888888765433222100000 0
Q ss_pred ccccHHHHHHhhhccccccCCCCCCCCCCCCCcccceEEeeeecCCCcceeechHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005306 428 ERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGA 507 (703)
Q Consensus 428 ~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l~L~Y~v~wPL~lIlt~~~l~~Y~~iFr~Ll~lk~~~~~L~~~ 507 (703)
........... ...... ........+.+..+|+.+.|+|++||||++|||+++|.+|++||+|||++|++++.|+++
T Consensus 382 ~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~l~L~y~~~~PL~lilt~~~~~~Y~~IF~~Ll~lk~~~~~L~~~ 458 (542)
T PF04130_consen 382 GEISSSTSLSS--NLSSND-SSSRNSNNSSSLEGWDALTLSYKVPWPLNLILTPSVMEKYNRIFRFLLQLKRAEWALQSV 458 (542)
T ss_dssp ---------------------------------TTTTEEEEE---TTGGGTS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchh--hhhhhh-hhcccccccccccccceeEEEecCCccHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000 000000 001112345678999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcc-cCC----CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Q 005306 508 WQVHQGAR-AFN----ASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCL 582 (703)
Q Consensus 508 w~~~~~~r-~~~----~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~w~~~~~~l~~a~~~d~l~~~H~~fL~~i~ 582 (703)
|...+..+ ... ......++++.+|++|.|||+++++|++++||++.|.+|.++++++.|+|+|+++|++||++|+
T Consensus 459 w~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~m~~fv~~l~~y~~~~vI~~~~~~f~~~l~~~~~~d~l~~~H~~yL~~i~ 538 (542)
T PF04130_consen 459 WRQLRRLSRKFGKPDRQSRPQLRRLQILRHRMQHFVNSLQSYLQFDVIEPSWSEFMEKLEKAKSLDELIEAHDDYLDRIL 538 (542)
T ss_dssp HHHHTSGGG--------S-SHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 99876421 111 1224577889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 005306 583 RECL 586 (703)
Q Consensus 583 ~~c~ 586 (703)
+.||
T Consensus 539 ~~~f 542 (542)
T PF04130_consen 539 RRCF 542 (542)
T ss_dssp HHHH
T ss_pred HhhC
Confidence 9997
No 4
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=100.00 E-value=2.5e-53 Score=477.20 Aligned_cols=519 Identities=26% Similarity=0.420 Sum_probs=437.0
Q ss_pred cchHHHHHHHHHHHhcCCCCCceeeccccCcCCCCCCCCCccceEecCC--CCHHHHHHHHHHHHHHhHHHHHHHHhhhc
Q 005306 51 GVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDAS--MDLALQEMAKRIFPLCESFVLTGQFVESR 128 (703)
Q Consensus 51 ~~qE~~lv~dLL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~i~~~--~~~sl~~l~~~il~lg~~~~~l~~fv~~~ 128 (703)
.+.|..+|++++|+++|+.|.++.++... ..|.+... +..++..++..+.++|.+|.++..|+...
T Consensus 201 ~i~e~~lvk~v~yvl~gv~~~~~~~~~~~------------~~~~~k~~~~~~~~~~~l~~~lSelg~l~~~~~~~~~~~ 268 (879)
T KOG2000|consen 201 LIKEEDLVKDVLYVLQGVDGALFSFDSEL------------ECFVVKGPVHLPRGISGLLYLLSELGVLYQRVSTFSDQL 268 (879)
T ss_pred cchHHHHHHHHHHHHhhhhhceeecccHH------------hhhhhhccccchhhHHHHHHHHHHHhHHHHhhhhhcchh
Confidence 48999999999999999999999987621 22323222 45677888999999999999999999875
Q ss_pred cCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-----------CCcHHHHHHhhhhHHHHHHHHHHHHHHhh
Q 005306 129 SQF---KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLG-----------RLSIQGLWFYCQPMLGSMQAVSAVIHKAS 194 (703)
Q Consensus 129 ~~~---~~g~v~~Al~~~l~~~L~~y~~~v~~lE~~~~~~-----------~lsL~~L~~~~~~~~~~l~~L~~i~~~~~ 194 (703)
... ..|.+.+||++++++.+++|+..|..+..++... .++|..++.++.....+|++++.++..+.
T Consensus 269 ~l~~~~~~g~v~qaf~~~l~~elq~y~~~v~~~~s~~~~~~~~~~~~~~~~~~~l~r~la~~~~~~~rl~i~~~l~e~~~ 348 (879)
T KOG2000|consen 269 VLDNPYCIGLVGQAFTAELSDELQYYYALVRSLLTSLSRNKIGIVNLKLVSEVTLLRLLAWIYEPGIRLQILCKLVEHCQ 348 (879)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccceecccccchhhhhhhhhHHHHHHHHhhcchhhhHHHHHHHHhc
Confidence 332 4899999999999999999999999988776321 14677788887788889999999999986
Q ss_pred cCCCchhhHHHHHHHHHHHccCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceEcCCCCcceeeeCccccccccccccch
Q 005306 195 ANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLTQDYDA 274 (703)
Q Consensus 195 ~~~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~~~~l~~d~~~ 274 (703)
..+|+.++..++... .+|++.++.+...++...+.||.+++..||+.|.+.|+|+||||.+++.... -..+
T Consensus 349 --~~~g~~l~~~~~~f~--~~g~~~i~~i~~~lL~~~~~p~~~~i~~wi~~G~l~D~y~EFfV~~~~~~~~-----~~~d 419 (879)
T KOG2000|consen 349 --VPKGGKLLSAVHEFL--THGDLYVHPIVFSLLHSSCSPYYRMLRNWLLEGELRDTYGEFFVAENPDPGS-----VKDD 419 (879)
T ss_pred --ccCCCcchHHHHHHH--HhCCCcccHHHHHHhhhcchHHHHHHHHHHHcCcccccccceEEeccCCCCc-----cccc
Confidence 788999999998875 5999999999999999999999999999999999999999999999886321 1246
Q ss_pred hhhhccccc-ccCCCcchHH-HHHHHHhhhhHHHHHHHhCCCCCcccccc--------c-cccccCCccchHHHHHHHHH
Q 005306 275 KYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQVPTSEN--------S-KLLSFGSNHHYLECVKVAYE 343 (703)
Q Consensus 275 ~~W~~~y~l-~~~vP~Fl~~-~a~~Il~~GK~l~~Lr~~~~~~~~p~~e~--------~-~l~~f~~~~~~~~~I~~~~~ 343 (703)
.+|+..|.+ .+++|+|++. +|.|||.|||++|+++.|+.+..|-..-. . .-..++.+..+...|+++|.
T Consensus 420 ~lw~~~~~l~~~~lP~Fi~~~~a~kI~l~GKsinfL~~~c~e~~w~~e~~~~~~~~~s~~~~l~~~~~~~l~~~v~~ay~ 499 (879)
T KOG2000|consen 420 RLWHDGYKLRYEMLPSFIPMELAQKILLIGKSINFLRDCCNEQTWSDEIDAKASVEESSTRDLEYASDVGLLGSVSEAYS 499 (879)
T ss_pred cccccccccchhhcccccCHHHHHHHHHhhhHHHHHHHhccccccccchhHHHHHhhhhhhhhccCCChhHHHHHhhhhc
Confidence 899999999 5899999998 99999999999999999988765422110 0 01234455677889999999
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhHhccCcchHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHhh-hccCCCCCCc
Q 005306 344 FASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRST-AAAADPCHED 422 (703)
Q Consensus 344 ~~s~~ll~ll~~~~~L~~hL~~lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~~~~~~~L~~~l~~al~~s-~~~~d~~~~~ 422 (703)
...+++.+++.+.+++.+|+.++|+|.|+|+|||+..+|+.+.+.+..|...+..+.|+..++.|+|.+ +++.||-
T Consensus 500 e~inhl~~ll~~~~~l~dh~~a~k~ylllGqgDfid~lme~~~n~l~~p~~tl~~~~lt~~ldsaiR~s~na~yd~~--- 576 (879)
T KOG2000|consen 500 EIVNHLNDILEEVISLLDHNQALKRYLLLGQSDFIDVLMEEKKNILARPRDTLPEHKLTGVLDSAVRSSLNAQYDDR--- 576 (879)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHhccchHHHHHHHhhcchhcCcchhhhHhHHHHHHHHHHhhhhccccCCh---
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 7766542
Q ss_pred ccceeccccHHHHHHhhhccccccCCCCCCCCCCCCCcccceEEeeeecCCCcceeechHHHHHHHHHHHHHHHHHHHHH
Q 005306 423 LTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVER 502 (703)
Q Consensus 423 l~~~l~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l~L~Y~v~wPL~lIlt~~~l~~Y~~iFr~Ll~lk~~~~ 502 (703)
+...++ |.+.. .-..+..|||.+.++|.|.-|+++|+|++++.+|-+||+|||++||+++
T Consensus 577 --------~vL~Rl------d~~~~------~~~~gd~gwdvfsl~y~v~~p~s~v~t~~~~~~ylrif~flwrlkR~e~ 636 (879)
T KOG2000|consen 577 --------DVLNRL------DVRVL------KLSHGDDGWDVFSLDYAVDGPLSLVLTRELMLKYLRVFNFLWKLKRVEF 636 (879)
T ss_pred --------hhhhhh------hhHhh------hccCCcccceeeeecceecccHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 22211 1134678999999999999999999999999999999999999999999
Q ss_pred HH-HHHHHHhhh-cc--cC--C----CchhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHHHHHhccCCC-HHHHH
Q 005306 503 QL-CGAWQVHQG-AR--AF--N----ASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVMHNRLQTAKS-IDEVI 571 (703)
Q Consensus 503 ~L-~~~w~~~~~-~r--~~--~----~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~w~~~~~~l~~a~~-~d~l~ 571 (703)
.| ..+|+..++ .+ .. . .....+++++.+..+|.||+.++|+|+.++|||.+|..|..+++.+.+ .|..+
T Consensus 637 ~L~~~i~k~~m~~~~~~~~~~~~~i~~~~~~~~r~h~~~~E~~~f~sq~q~y~~f~vie~~wk~l~~~~~~a~~~ld~~~ 716 (879)
T KOG2000|consen 637 LLELHIWKMLMKDCNVAKRDRLLKIPEISCALHRCHILTNEMNHFISQMQYYILFEVIECSWKELSKKMEPARNPLDFQL 716 (879)
T ss_pred HHHHHHHHhhhhhhcccccchhcchHHHHhhhhhhhhHHHHHHHHHHhhhhccccchhhcChHHHHHHHhhccCchHHHH
Confidence 99 789998873 11 11 1 112345678888999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHhcCCC-hH---HHHHHHHHHHHHHHHHHHHHHH
Q 005306 572 QHHDFFLDKCLRECLLHL-PD---LLKKVERLKSLCLQYAAATQWL 613 (703)
Q Consensus 572 ~~H~~fL~~i~~~c~L~~-~~---l~~~l~~il~~c~~F~~~~~~~ 613 (703)
++|+-|+++|.-.|++.+ ++ +.+.+..+++.++.+......+
T Consensus 717 eah~~~~~ti~i~~~l~~~~~~~s~~~~l~~l~e~Il~~~~~~~~~ 762 (879)
T KOG2000|consen 717 EAHRPFLDTISIRGILQEKASVESIEHSLSALLELILNLAELQSSF 762 (879)
T ss_pred hhccccccceeecccccCcccchhhHHhHHHHHHHHhhhhcccccc
Confidence 999999999999999997 33 7788888888888888765443
No 5
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=6e-28 Score=253.54 Aligned_cols=601 Identities=18% Similarity=0.185 Sum_probs=391.7
Q ss_pred cchHHHHHHHHHHHhcCCCCCceeeccccCcCCCCCCCCCccceEecCC-CCHHHHHHHHHHHHHHhHHHHHHHHhhhcc
Q 005306 51 GVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDAS-MDLALQEMAKRIFPLCESFVLTGQFVESRS 129 (703)
Q Consensus 51 ~~qE~~lv~dLL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~i~~~-~~~sl~~l~~~il~lg~~~~~l~~fv~~~~ 129 (703)
-++|-..+.+-++.+-|.+.-|+. .. ..++... ....+-|+ ..+-.+..++.+.-+|.....+..|+....
T Consensus 289 lvtepprifeqlWllggtdkLFif-ih----idgkcqd---rhlialphlahpcdnfaleqiaalghnafgLlafidekm 360 (1121)
T KOG4344|consen 289 LVTEPPRIFEQLWLLGGTDKLFIF-IH----IDGKCQD---RHLIALPHLAHPCDNFALEQIAALGHNAFGLLAFIDEKM 360 (1121)
T ss_pred ccCCCCcHHHHHHHhcCCceEEEE-Ee----ecceeee---eeeeeccccccchHHHHHHHHHHhhhhHHHHHhccchhc
Confidence 355666778888888887665543 33 2333221 22222333 356668889999999999999999987653
Q ss_pred CCC------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCcHHHHHHhhhhHHHH--HHHHH
Q 005306 130 QFK------------------NGLVNHAFAASLRALLLDYEAMVAQLEHQFRL--GRLSIQGLWFYCQPMLGS--MQAVS 187 (703)
Q Consensus 130 ~~~------------------~g~v~~Al~~~l~~~L~~y~~~v~~lE~~~~~--~~lsL~~L~~~~~~~~~~--l~~L~ 187 (703)
..+ +=..-+||.-++-+.--.|...++.++.-+.+ ..++|..+.-.+.|++.. +..+.
T Consensus 361 ghepcllleglfmfpkkascafFefdkAfmralvkdfisfkeelaeIckcianndqnflLadVVdaLadmlelrhiidlH 440 (1121)
T KOG4344|consen 361 GHEPCLLLEGLFMFPKKASCAFFEFDKAFMRALVKDFISFKEELAEICKCIANNDQNFLLADVVDALADMLELRHIIDLH 440 (1121)
T ss_pred cCCchHhhhhcccccCccccchhhHHHHHHHHHHHHHhhhHHHHHhHHhhhhcCCceeeHHHHHHHHHHHHhhHHHHHHH
Confidence 211 11344555555555555567777888765533 346666666555555433 22222
Q ss_pred HHHHHh--h-c----CCCchhhHHHHHHHHHHHc--cCC--hHH-HHHHHHHHHHHhHHHHHHHHHHHhhceEcCCCCcc
Q 005306 188 AVIHKA--S-A----NNFTGSAVLNLLQSQAKAM--AGD--NTV-RSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEF 255 (703)
Q Consensus 188 ~i~~~~--~-~----~~~~g~~lL~~L~~~~~~~--~Gd--~~~-~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EF 255 (703)
.+.-.- + + .......+++-+++.+..+ .|+ ++. ..++-.|.-....||++.+..|+.+|.++|+..||
T Consensus 441 klffhGVaetppdeffavgardLlnpickaiiaYddrgeadeakntlilFsiefeehfpqLqlldElaedghLddGaaef 520 (1121)
T KOG4344|consen 441 KLFFHGVAETPPDEFFAVGARDLLNPICKAIIAYDDRGEADEAKNTLILFSIEFEEHFPQLQLLDELAEDGHLDDGAAEF 520 (1121)
T ss_pred HHhhcccccCCCchhhhhhHHHHHHHHHHHHHHhccccccCcccceEEEEEEehhhhhHHHHHHHHHHHhccccccHHHH
Confidence 222110 0 0 1223357899999876543 343 322 22344566778899999999999999999999999
Q ss_pred eeeeCccccccccccccchhhhh---------------ccccc---------------ccCCCcchHHHHHHHHhhhhHH
Q 005306 256 FIAEDKSLLKESLTQDYDAKYWR---------------QRYSL---------------KDGIPSFLANIAGKILTTGKYL 305 (703)
Q Consensus 256 fI~~~~~~~~~~l~~d~~~~~W~---------------~~y~l---------------~~~vP~Fl~~~a~~Il~~GK~l 305 (703)
.|..+.+.-- ...++|- ++|.+ ++-+-+|..+.-..|..+||..
T Consensus 521 iiarlknrlv------kHrdfqyaphqklataekfeneekmcdiadassgraagedhlqefiVeFckeedaniimagkrk 594 (1121)
T KOG4344|consen 521 IIARLKNRLV------KHRDFQYAPHQKLATAEKFENEEKMCDIADASSGRAAGEDHLQEFIVEFCKEEDANIIMAGKRK 594 (1121)
T ss_pred HHHHHhcccc------ccchhhhccHHHHHHHHHhhhHHHHhhhhccccccccChHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 9988764210 0111220 11211 1123456666556788999999
Q ss_pred HHHHH--hCCCC----------C-ccc-------------------------------ccc----------------cc-
Q 005306 306 NVMRE--CGHSA----------Q-VPT-------------------------------SEN----------------SK- 324 (703)
Q Consensus 306 ~~Lr~--~~~~~----------~-~p~-------------------------------~e~----------------~~- 324 (703)
+.+.+ |..+- + +|- .|. .+
T Consensus 595 qllgnlqcaEddKOGaeafdaeqscpLYqLfLEhalergehgddlcspntLsEmlqankEiqLmklhdeaeshffalddV 674 (1121)
T KOG4344|consen 595 QLLGNLQCAEDDLCLAEAFDAEQSCPLYQLFLEHALERGEHGDDLCSPNTLSEMLQANKEIQLMKLHDEAESHFFALDDV 674 (1121)
T ss_pred HhhccccccchhhHHHHhhhhhhcCcHHHHHHHHHHHhccccccccCHHHHHHHHhhccccchhhHHHHHHHhHHHHhhc
Confidence 99884 43221 0 110 000 00
Q ss_pred -----ccccCC--------------------------c---------cchHHHHHHH--HHHHHHHHHHHHHhhccHHHH
Q 005306 325 -----LLSFGS--------------------------N---------HHYLECVKVA--YEFASGELLNLIKERYDLMGK 362 (703)
Q Consensus 325 -----l~~f~~--------------------------~---------~~~~~~I~~~--~~~~s~~ll~ll~~~~~L~~h 362 (703)
.+.|.+ + .-+.+.|+++ |-..+..||.-+.+++.+.+.
T Consensus 675 hcgadaidfadepeedkDfedkfacgdvcvdrsqeirncelFaiflqpclephidkQrerLdccgnLManikKdlelsec 754 (1121)
T KOG4344|consen 675 HCGADAIDFADEPEEDKDFEDKFACGDVCVDRSQEIRNCELFAIFLQPCLEPHIDKQRERLDCCGNLMANIKKDLELSEC 754 (1121)
T ss_pred cCcccccchhhCCCccccHHHhhccccccccccccceehhhHHHHhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 000100 0 0123568888 666789999999999999999
Q ss_pred HHHHHHhHhccCcchHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHhhhccCC---CCCCcccceeccccHHH-HHHh
Q 005306 363 LRSIKRYLLLDQGDFLVHFMDIAREELMKQLDEITVEKLQSLLDIALRSTAAAAD---PCHEDLTCSVERSSLLK-RMAT 438 (703)
Q Consensus 363 L~~lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~~~~~~~L~~~l~~al~~s~~~~d---~~~~~l~~~l~~~~l~~-~l~~ 438 (703)
|++.+.||++.+||.+..|.-..++.+.....+.+...++..|+.|.--. ..- |+...+.+.+++-+-.+ .|.+
T Consensus 755 LQakreffeaegedlmrdfwlaiedaIRakckeqnVaekmrfLqeamgle--krYlfvedsnaLfirfEnvdnakkaLgs 832 (1121)
T KOG4344|consen 755 LQAKREFFEAEGEDLMRDFWLAIEDAIRAKCKEQNVAEKMRFLQEAMGLE--KRYLFVEDSNALFIRFENVDNAKKALGS 832 (1121)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHhhhh--hcccccccccceeEEeecccchhhhcch
Confidence 99999999999999999999999988877666666666666777765311 111 23344444444211000 0100
Q ss_pred h-----hc------------cccccCCCCCCCCCCCCCcccceEEeeee--cCCCcceeechHHHHHHHHHHHHHHHHHH
Q 005306 439 L-----KG------------VEIKTSSDSVDLEQPVSITGLETFSLSYK--VQWPLSIVISRKALTKYQMVFRLLFHCKH 499 (703)
Q Consensus 439 ~-----~~------------l~~~~~~~~~~~~~~~~~~~~d~l~L~Y~--v~wPL~lIlt~~~l~~Y~~iFr~Ll~lk~ 499 (703)
+ .+ +.++..+.- ....-....++|++.|+|+ ++||..+|||+.+|..||.+|+.|+++|+
T Consensus 833 vltsklcavllphypqlahylhvklisqi-nsnsikvveaLdaieLdferpmamhqdiiislacmkdYNqVflLlLkiKW 911 (1121)
T KOG4344|consen 833 VLTSKLCAVLLPHYPQLAHYLHVKLISQI-NSNSIKVVEALDAIELDFERPMAMHQDIIISLACMKDYNQVFLLLLKIKW 911 (1121)
T ss_pred hhhhhhhhhhcccchhhhhHHHHHHHhhh-cccchhhhhhhhheeecccCCcccchheEecHHHHHHHHHHHHHHHHHHH
Confidence 0 00 000000000 0011233678999999999 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHh---hh----cc---------------cCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhcHHHH
Q 005306 500 VERQLCGAWQVH---QG----AR---------------AFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNWHVM 557 (703)
Q Consensus 500 ~~~~L~~~w~~~---~~----~r---------------~~~~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~w~~~ 557 (703)
+.|.|.++-... +. .| +.+..+..++|...+|.+++|||+||+.|+|..|+++...+|
T Consensus 912 AkwkLdnllfgelvsmaekpRakegliheqdtvaqfcapkdliglqIhRleilRfkLiffiNnLHahIMeailhStgleF 991 (1121)
T KOG4344|consen 912 AKWKLDNLLFGELVSMAEKPRAKEGLIHEQDTVAQFCAPKDLIGLQIHRLEILRFKLIFFINNLHAHIMEAILHSTGLEF 991 (1121)
T ss_pred HHHhhhhhhhhhhhhhhhhhhhhccccccccccccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Confidence 999999854311 11 01 112235678999999999999999999999999999999999
Q ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCChhH
Q 005306 558 HNRLQTAKSIDEVIQHHDFFLDKCLRECLLHL--PDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSEK 635 (703)
Q Consensus 558 ~~~l~~a~~~d~l~~~H~~fL~~i~~~c~L~~--~~l~~~l~~il~~c~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (703)
+.++.+|+|+|+++..|++||..|-..|+|++ +.+..+|.+|+.+++.|+.-|+...+ -+ +...+
T Consensus 992 ehqieEaKdldeLiiiHdehLatihdhClLrdefkafkeAidkifhLalmfadeWqtcas-cm--hagda---------- 1058 (1121)
T KOG4344|consen 992 EHQIEEAKDLDELIIIHDEHLATIHDHCLLRDEFKAFKEAIDKIFHLALMFADEWQTCAS-CM--HAGDA---------- 1058 (1121)
T ss_pred HHHHhhhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchhhh-hh--ccccc----------
Confidence 99999999999999999999999999999997 57789999999999999999987652 11 11110
Q ss_pred HHHHHhhhhhhhhhhhhhhhhHHHHHHHH--------HHHHHHHHHhHHHHhhcc--ccccchHHHHHHHHhccC
Q 005306 636 FKRLKLRSLSQVQKVMIRDATVTESILKF--------EREFNNELQSLGPILSSS--SQAEPYLTHLAQLVLGVG 700 (703)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--------~~~F~~~~~~l~~~L~~~--~~~~~~~~~L~~lllrld 700 (703)
-+ ..++|.+. .+.|.++..+++..++.. .+..++...|+-++..=|
T Consensus 1059 ------KO-------------GdesIeddeiDdsetqrrsfencalflVaeiekavcRchfmhadiLalllhagd 1114 (1121)
T KOG4344|consen 1059 ------LC-------------LDESIEDDEIDDSETQRRSFENCALFLVAEIEKAVCRCHFMHADILALLLHAGD 1114 (1121)
T ss_pred ------hh-------------hhhhhhcccccchHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHhcCc
Confidence 00 01122222 245899999999888873 356788888887776543
No 6
>PF14609 GCP5-Mod21: gamma-Tubulin ring complex non-core subunit mod21
Probab=33.10 E-value=4.1e+02 Score=29.55 Aligned_cols=63 Identities=10% Similarity=0.140 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHHHhcCCCCCceeeccccCcCCCCCCCCCccceEecCC---CCHH-HHHHHHHHHHHHhHHHHHHHHhh
Q 005306 51 GVQELLVIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDAS---MDLA-LQEMAKRIFPLCESFVLTGQFVE 126 (703)
Q Consensus 51 ~~qE~~lv~dLL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~i~~~---~~~s-l~~l~~~il~lg~~~~~l~~fv~ 126 (703)
.+.|+-++.|.+++|+|++|-+|...+ ..+...|. ++.+ ++.++..+...|..+..+++-..
T Consensus 179 riseqs~~~e~IymL~Gy~~~~f~~ve--------------~~l~~~P~~~~ls~~i~~~il~~~~~~G~~l~~~nqva~ 244 (653)
T PF14609_consen 179 RISEQSWKYEIIYMLMGYQGHIFTCVE--------------EILRHAPQNQHLSYWIQQHILSNFCNWGRELHIMNQVAN 244 (653)
T ss_pred eecccchHHHHHHHHhcCcchhhhhhH--------------hhhcccccccchHHHHHHHHHHHhhccccchHHHHHHhC
Confidence 678999999999999999999996544 12222232 3333 35577777778877777776544
Q ss_pred h
Q 005306 127 S 127 (703)
Q Consensus 127 ~ 127 (703)
+
T Consensus 245 ~ 245 (653)
T PF14609_consen 245 E 245 (653)
T ss_pred C
Confidence 4
No 7
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=27.01 E-value=3.5e+02 Score=26.41 Aligned_cols=86 Identities=13% Similarity=0.052 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhhhcCCCcHHHHHHhhhhHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHccCChHHHHHHHHHH
Q 005306 149 LDYEAMVAQLEHQFRLGRLSIQGLWFYCQPMLGSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMT 228 (703)
Q Consensus 149 ~~y~~~v~~lE~~~~~~~lsL~~L~~~~~~~~~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll 228 (703)
-+|...+.+||.|+.+....+-++...+..+..++.+-.-.+..+ -|+.+|-. ++|-.....+...++
T Consensus 11 ~~~~~~L~rle~qi~q~~~~~~~~qs~l~~~~~r~tv~slAl~~l---------~~S~iy~~---~~~y~~~~~It~~ll 78 (251)
T COG5415 11 TKYTADLSRLESQIHQLDVALKKSQSILSQWQSRLTVYSLALTVL---------ALSYIYWE---YHGYRPYLVITALLL 78 (251)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH---------HHHHHHhh---ccccchhHHHHHHHH
Confidence 357777888888876665555555555555554443321111111 12555543 678777766666666
Q ss_pred HHHhHHHHHHHHHHHhhc
Q 005306 229 QCASNAYLGILERWVYEG 246 (703)
Q Consensus 229 ~~~~~py~~~l~~Wi~~G 246 (703)
-..+--+++..-.|++.-
T Consensus 79 gs~slymfrwal~~lye~ 96 (251)
T COG5415 79 GSGSLYMFRWALTKLYEF 96 (251)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 655556667777777743
No 8
>KOG2000 consensus Gamma-tubulin complex, DGRIP91/SPC98 component [Cytoskeleton]
Probab=25.68 E-value=1.1e+02 Score=36.97 Aligned_cols=121 Identities=11% Similarity=-0.058 Sum_probs=88.6
Q ss_pred CcccceEEeeeecCCCcceeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-h-cccCCCchhhHHHHHHHHHHHHH
Q 005306 459 ITGLETFSLSYKVQWPLSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQ-G-ARAFNASGTAISRSSLLCRSMLK 536 (703)
Q Consensus 459 ~~~~d~l~L~Y~v~wPL~lIlt~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~~~~-~-~r~~~~~~~~~~~~~~lr~~m~~ 536 (703)
..++|.-...|++..++.-.++.-. . ..+|.++|++.+-.|.+.+.|.... . .+....... ..-..|..|.|
T Consensus 589 ~~~gd~gwdvfsl~y~v~~p~s~v~-t--~~~~~~ylrif~flwrlkR~e~~L~~~i~k~~m~~~~---~~~~~~~~~i~ 662 (879)
T KOG2000|consen 589 LSHGDDGWDVFSLDYAVDGPLSLVL-T--RELMLKYLRVFNFLWKLKRVEFLLELHIWKMLMKDCN---VAKRDRLLKIP 662 (879)
T ss_pred ccCCcccceeeeecceecccHHHHh-h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc---ccccchhcchH
Confidence 4677888899999999999887433 2 8999999999999999999998873 2 221110000 03356778999
Q ss_pred HHHHHHHHHHHHhchhcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCC
Q 005306 537 FINSLLHYLTFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLH 588 (703)
Q Consensus 537 Fv~~l~~Y~~~~VIe~~w~~~~~~l~~a~~~d~l~~~H~~fL~~i~~~c~L~ 588 (703)
++.+...++...+.|-+| |..+++--..++ +++.|-.++...+..-...
T Consensus 663 ~~~~~~~r~h~~~~E~~~--f~sq~q~y~~f~-vie~~wk~l~~~~~~a~~~ 711 (879)
T KOG2000|consen 663 EISCALHRCHILTNEMNH--FISQMQYYILFE-VIECSWKELSKKMEPARNP 711 (879)
T ss_pred HHHhhhhhhhhHHHHHHH--HHHhhhhccccc-hhhcChHHHHHHHhhccCc
Confidence 999999999888776544 445555445555 9999999998888766653
No 9
>KOG4344 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.91 E-value=48 Score=37.48 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CcHH--HHHHhhhhHHHHHHHHHHHHHHhhcCCCch------hhHH
Q 005306 135 LVNHAFAASLRALLLDYEAMVAQLEHQFRLGR--LSIQ--GLWFYCQPMLGSMQAVSAVIHKASANNFTG------SAVL 204 (703)
Q Consensus 135 ~v~~Al~~~l~~~L~~y~~~v~~lE~~~~~~~--lsL~--~L~~~~~~~~~~l~~L~~i~~~~~~~~~~g------~~lL 204 (703)
+.-.-|+-+.+.+|+...+.|...|.....+. -++. .+| ++.....|+.+.+++.... -.+| ..++
T Consensus 451 ppdeffavgardLlnpickaiiaYddrgeadeakntlilFsie--feehfpqLqlldElaedgh--LddGaaefiiarlk 526 (1121)
T KOG4344|consen 451 PPDEFFAVGARDLLNPICKAIIAYDDRGEADEAKNTLILFSIE--FEEHFPQLQLLDELAEDGH--LDDGAAEFIIARLK 526 (1121)
T ss_pred CCchhhhhhHHHHHHHHHHHHHHhccccccCcccceEEEEEEe--hhhhhHHHHHHHHHHHhcc--ccccHHHHHHHHHh
Confidence 45567899999999999998888887654432 1222 233 3344555666666665432 1223 3455
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceEcCCCCcceeeeCc
Q 005306 205 NLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDK 261 (703)
Q Consensus 205 ~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~ 261 (703)
|.+++... .-....+.+.........+-|+...+.|.......|...||+|+--.
T Consensus 527 nrlvkHrd--fqyaphqklataekfeneekmcdiadassgraagedhlqefiVeFck 581 (1121)
T KOG4344|consen 527 NRLVKHRD--FQYAPHQKLATAEKFENEEKMCDIADASSGRAAGEDHLQEFIVEFCK 581 (1121)
T ss_pred ccccccch--hhhccHHHHHHHHHhhhHHHHhhhhccccccccChHHHHHHHHHHHH
Confidence 65655321 11123456666677778899999999999999999999999987543
No 10
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=22.34 E-value=4e+02 Score=23.86 Aligned_cols=60 Identities=17% Similarity=0.285 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHHhHHHHHHHHhhhccCC---CCCHHHHHH---HHHHHHHHHHHHHHHHHHHHhh
Q 005306 101 DLALQEMAKRIFPLCESFVLTGQFVESRSQF---KNGLVNHAF---AASLRALLLDYEAMVAQLEHQF 162 (703)
Q Consensus 101 ~~sl~~l~~~il~lg~~~~~l~~fv~~~~~~---~~g~v~~Al---~~~l~~~L~~y~~~v~~lE~~~ 162 (703)
+.|...+-++|+.+...| ++...|+.... ++|..+.+. -.++.-+|.+..+.+..||.++
T Consensus 37 ~~ss~~LR~QILdLSkrY--VKaLAeEn~~~~dgp~~~smagYaDLKktiAVLLddiLqRl~kLE~kv 102 (138)
T PF15027_consen 37 HQSSAELREQILDLSKRY--VKALAEENKNVVDGPYGASMAGYADLKKTIAVLLDDILQRLVKLESKV 102 (138)
T ss_pred ccChHHHHHHHHHHHHHH--HHHHHHHcCCCCCCCcchhhHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Confidence 334457778899987655 45555655322 344444444 3456667888888888888765
No 11
>PLN00032 DNA-directed RNA polymerase; Provisional
Probab=22.15 E-value=1e+02 Score=24.58 Aligned_cols=48 Identities=21% Similarity=0.368 Sum_probs=34.8
Q ss_pred HHHhchhcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 005306 546 TFEVLEPNWHVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLK 594 (703)
Q Consensus 546 ~~~VIe~~w~~~~~~l~~a~~~d~l~~~H~~fL~~i~~~c~L~~~~l~~ 594 (703)
...||...|.+|.+.+++-.+..++...-. .=.-|.+..||+..++.+
T Consensus 10 CGkvig~~we~y~~~~~~g~~~~~~LD~LG-~~RYCCRRMllsHvdlid 57 (71)
T PLN00032 10 CGKVIGNKWDTYLDLLQADYSEGDALDALG-LVRYCCRRMLMTHVDLIE 57 (71)
T ss_pred CCCCcHHHHHHHHHHHhcCCCHHHHHHHhC-chhhhhhhHHHHHHHHHH
Confidence 356899999999999988778877665532 234577888887765433
No 12
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=21.31 E-value=5.2e+02 Score=22.05 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=42.9
Q ss_pred HHHHHHHHHH----HhHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCcHHHHHHhhh
Q 005306 105 QEMAKRIFPL----CESFVLTGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFR--LGRLSIQGLWFYCQ 177 (703)
Q Consensus 105 ~~l~~~il~l----g~~~~~l~~fv~~~~~~~~g~v~~Al~~~l~~~L~~y~~~v~~lE~~~~--~~~lsL~~L~~~~~ 177 (703)
++++.+|+.+ +..|..+..=...+-......-.+++|..|....+..-..|..+|..+. .+...+..+...+|
T Consensus 2 ~~Ll~~f~~~Qe~Ra~~Y~~~~~gf~~yl~~~~~~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ 80 (97)
T PF14966_consen 2 RELLRRFFALQERRAQLYNRFEEGFKKYLRSGPEEAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIRELQ 80 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 3556666655 4555555543333211223355667788888888888888999998876 33444444444443
No 13
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=20.63 E-value=3.1e+02 Score=22.32 Aligned_cols=44 Identities=16% Similarity=0.274 Sum_probs=29.3
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Q 005306 561 LQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYA 607 (703)
Q Consensus 561 l~~a~~~d~l~~~H~~fL~~i~~~c~L~~~~l~~~l~~il~~c~~F~ 607 (703)
+++--+++||+..|.+++..+...+ ...+...++=++.+..-|.
T Consensus 31 i~~~I~PEeIv~iH~~~v~~l~~~~---~~~v~~sld~LlEvm~~yg 74 (77)
T PF08673_consen 31 IEKDISPEEIVEIHKSAVQELSPSL---PEDVLDSLDFLLEVMIGYG 74 (77)
T ss_dssp HHTT--HHHHHHHHHHHHHHH-TTS----HHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHcccc---HHHHHHHHHHHHHHHHHcC
Confidence 3455689999999999998887665 5566667766666655553
Done!