Query 005306
Match_columns 703
No_of_seqs 303 out of 867
Neff 8.6
Searched_HMMs 29240
Date Mon Mar 25 21:35:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005306.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005306hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rip_A Gamma-tubulin complex c 100.0 1.1E-92 3.7E-97 822.2 54.1 589 57-702 1-651 (677)
2 2jxc_B Stonin-2, stoned B; end 77.0 3.3 0.00011 27.6 3.9 37 3-54 6-42 (45)
3 3t98_B Nucleoporin NUP58/NUP45 44.5 1.2E+02 0.0043 24.5 8.7 56 133-188 6-65 (93)
4 3obv_E Protein diaphanous homo 15.0 7.9E+02 0.027 25.9 10.8 89 102-190 202-304 (457)
5 1w53_A Phosphoserine phosphata 13.8 3.4E+02 0.012 21.4 5.5 42 562-607 39-81 (84)
6 2j6y_A Phosphoserine phosphata 13.1 5.8E+02 0.02 21.2 7.0 47 561-611 38-85 (111)
7 4e17_B Catenin alpha-1; four h 12.3 1.7E+02 0.0059 19.5 2.8 16 137-152 21-36 (40)
8 2wx4_A DCP1, decapping protein 11.3 1.7E+02 0.0059 20.2 2.6 19 566-584 25-43 (46)
9 2wx3_A MRNA-decapping enzyme 1 10.5 2.3E+02 0.0079 20.0 3.1 18 566-583 27-44 (51)
10 4a64_A Cullin-4B, CUL4B, CUL-4 9.5 1.1E+03 0.039 23.4 9.7 73 523-601 269-346 (354)
No 1
>3rip_A Gamma-tubulin complex component 4; helix bundles, gamma-tubulin ring complex, gamma-TURC, struc protein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-92 Score=822.18 Aligned_cols=589 Identities=22% Similarity=0.358 Sum_probs=482.2
Q ss_pred HHHHHHHHhcCCCCCceeeccccCcCCCCCCCCCccceEecC---CCCHHHHHHHHHHHHHHhHHHHHHHHhhhccCC--
Q 005306 57 VIDDLLSALVGIEGRYISIKRRVNHVHGNDTYDSTVTFQVDA---SMDLALQEMAKRIFPLCESFVLTGQFVESRSQF-- 131 (703)
Q Consensus 57 lv~dLL~~L~G~~g~~i~~~~~~~~~~~~~~~~~~~~f~i~~---~~~~sl~~l~~~il~lg~~~~~l~~fv~~~~~~-- 131 (703)
||+|||++|+|++|.||++++ ..+|.|++ .+++|+++++++++++|.+|++|++|++..+..
T Consensus 1 Ml~dlL~~L~G~~g~~i~~~~-------------~~~f~v~~~~~~l~~s~r~ll~~l~~lg~~y~~l~~fv~~~~~~~~ 67 (677)
T 3rip_A 1 MIHELLLALSGYPGSIFTWNK-------------RSGLQVSQDFPFLHPSETSVLNRLCRLGTDYIRFTEFIEQYTGHVQ 67 (677)
T ss_dssp CHHHHHHHHTTCCCSSSEEET-------------TTEEECCSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC--
T ss_pred ChHHHHHHHcCCCCCceEecC-------------CCceeeCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 689999999999999999866 14788988 568999999999999999999999999974321
Q ss_pred -------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCCcHHHHHHhhhhHHHHHHHHHHHHHHhhcCC
Q 005306 132 -------------KNGLVNHAFAASLRALLLDYEAMVAQLEHQFRL-GRLSIQGLWFYCQPMLGSMQAVSAVIHKASANN 197 (703)
Q Consensus 132 -------------~~g~v~~Al~~~l~~~L~~y~~~v~~lE~~~~~-~~lsL~~L~~~~~~~~~~l~~L~~i~~~~~~~~ 197 (703)
..|+|.+|||++|+++|++|+..|+++|+++.. +.+||+.++.+++|+...|+.|++|+.++..+.
T Consensus 68 ~~~~~~~~~~~~~~~g~v~~Al~~~i~~~L~~Y~~~i~~lE~~~l~~~~~sL~~l~~~l~~~~~~l~~L~~l~~~~~~~~ 147 (677)
T 3rip_A 68 QQDHHPSQQGQGGLHGIYLRAFCTGLDSVLQPYRQALLDLEQEFLGDPHLSISHVNYFLDQFQLLFPSVMVVVEQIKSQK 147 (677)
T ss_dssp -----------CCSCSHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 169999999999999999999999999999854 679999999999999999999999999987668
Q ss_pred CchhhHHHHHHHHHHHccCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceEcCCCCcceeeeCccccccccc--------
Q 005306 198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAEDKSLLKESLT-------- 269 (703)
Q Consensus 198 ~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~Dp~~EFfI~~~~~~~~~~l~-------- 269 (703)
++||++|+.||+.+ .+|||.+++++.+|+..|++||++||..||.+|+|.|||+||||++++...+....
T Consensus 148 ~~G~~lL~~L~~~~--~~Gd~~~~~~~~~Ll~~~~~~~~~~L~~Wl~~G~L~Dp~~EFFI~~~~~~~~~~~~~~~~~~~~ 225 (677)
T 3rip_A 148 IHGCQILETVYKHS--CGGLPPVRSALEKILAVCHGVMYKQLSAWMLHGLLLDQHEEFFIKQGPSSGNVSAQPEEDEEDL 225 (677)
T ss_dssp CCTHHHHHHHHHHH--HSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSCSSEEEC-----------------
T ss_pred CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCCcchheeEecccccccccccccccccc
Confidence 99999999999987 49999999999999999999999999999999999999999999998654321000
Q ss_pred --------------------cccchhhhhccccc-ccCCCcchHH-HHHHHHhhhhHHHHHHHhCCCCC-----cccccc
Q 005306 270 --------------------QDYDAKYWRQRYSL-KDGIPSFLAN-IAGKILTTGKYLNVMRECGHSAQ-----VPTSEN 322 (703)
Q Consensus 270 --------------------~d~~~~~W~~~y~l-~~~vP~Fl~~-~a~~Il~~GK~l~~Lr~~~~~~~-----~p~~e~ 322 (703)
++....+|..+|+| .+++|+|+++ +|+|||.|||++|+||+|+.... ++..+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~e~~~~~~w~~~y~l~~~~lP~Fl~~~~A~kIl~~GKsln~lr~~~~~~~~~~~~~~~~~~ 305 (677)
T 3rip_A 226 GIGGLTGKQLRELQDLRLIEEENMLAPSLKQFSLRVEILPSYIPVRVAEKILFVGESVQMFENQNVNLTRKGSILKNQED 305 (677)
T ss_dssp ---------------------------CCCCEEECGGGSCTTSCHHHHHHHHHHHHHHHTCCC-CCSCC---CTTCSHHH
T ss_pred ccccccccccchhhhhhcccccccccchhcceeecHhhCcCccCHHHHHHHHHhhHHHHHHHccCCCCCcccccccchHH
Confidence 00012479999999 7889999987 99999999999999999875421 000000
Q ss_pred c------cccccC--CccchHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhHhccCcchHHHHHHHHHHHHhcccc
Q 005306 323 S------KLLSFG--SNHHYLECVKVAYEFASGELLNLIKERYDLMGKLRSIKRYLLLDQGDFLVHFMDIAREELMKQLD 394 (703)
Q Consensus 323 ~------~l~~f~--~~~~~~~~I~~~~~~~s~~ll~ll~~~~~L~~hL~~lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~ 394 (703)
. .+.... +...|...|+++|..||+.|+++++++++|.+||+++|+||||++|||+.+|++.++++|.+|+.
T Consensus 306 ~~~~~l~~L~~~~~~~~~~~e~~I~~~~~~as~~Ll~lL~~~~~L~~hL~~Lk~yfLL~~Gdf~~~f~~~~~~~L~~~~~ 385 (677)
T 3rip_A 306 TFAAELHRLKQQPLFSLVDFEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIIKDFYLLGRGELFQAFIDTAQHMLKTPPT 385 (677)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCc
Confidence 0 010110 11367889999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCHHHHHHHHHHHHHhhhccCCCCCCcccceeccccHHHHHHhhhccccccCCCCCCCCCCCCCcccceEEeeeecCCC
Q 005306 395 EITVEKLQSLLDIALRSTAAAADPCHEDLTCSVERSSLLKRMATLKGVEIKTSSDSVDLEQPVSITGLETFSLSYKVQWP 474 (703)
Q Consensus 395 ~~~~~~L~~~l~~al~~s~~~~d~~~~~l~~~l~~~~l~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~d~l~L~Y~v~wP 474 (703)
+++..+|+..|+.|++.+....+++.+.+.+.+........ ..-...+ ..+ ......+.+..|||+|+|+|+||||
T Consensus 386 ~~~~~~L~~~L~~a~~~~~~~~~~~~~~L~~~i~~~~~~~~-~~~~~~~--~~~-~~~~~~~~~~~~~d~l~L~Y~v~~P 461 (677)
T 3rip_A 386 AVTEHDVNVAFQQSAHKVLLDDDNLLPLLHLTIEYHGKEHK-DATQARE--GPS-RETSPREAPASGWAALGLSYKVQWP 461 (677)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCCTTTGGGEEEEECCCC---------------------------CCTTTTEEEEECCCTT
T ss_pred ccCHHHHHHHHHHHHHHccCCchhhHhcceEEeeccccccc-ccccccc--ccc-cccccccCCccchheEEEEEeCCCh
Confidence 99999999999999998766666666677666554321100 0000000 000 0011223457899999999999999
Q ss_pred cceeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHhchhcH
Q 005306 475 LSIVISRKALTKYQMVFRLLFHCKHVERQLCGAWQVHQGARAFNASGTAISRSSLLCRSMLKFINSLLHYLTFEVLEPNW 554 (703)
Q Consensus 475 L~lIlt~~~l~~Y~~iFr~Ll~lk~~~~~L~~~w~~~~~~r~~~~~~~~~~~~~~lr~~m~~Fv~~l~~Y~~~~VIe~~w 554 (703)
|++|||+++|.+|++||+|||++||+++.|+++|+.++..|........+++ +.+|++|+|||+++++|++++||+++|
T Consensus 462 L~liit~~~l~~Y~~iF~~Ll~lkr~~~~L~~~w~~~~~~~~~~~~~~~~~~-~~lr~~m~~Fv~~l~~Y~~~~Vie~~w 540 (677)
T 3rip_A 462 LHILFTPAVLEKYNVVFKYLLSVRRVQAELQHCWALQMQRKHLKSNQTDAIK-WRLRNHMAFLVDNLQYYLQVDVLESQF 540 (677)
T ss_dssp GGGTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSGGGCCSSHHHHHH-HHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988755443222233344 899999999999999999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCCCChh
Q 005306 555 HVMHNRLQTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLCLQYAAATQWLISSSIDLPKLEEPSDGFSGSE 634 (703)
Q Consensus 555 ~~~~~~l~~a~~~d~l~~~H~~fL~~i~~~c~L~~~~l~~~l~~il~~c~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (703)
.+|++++++++|+|+|+++|++||++|+++|||+++++.+++.+|+++|++||..+++.. . ..
T Consensus 541 ~~~~~~l~~~~~~d~l~~~H~~~L~~i~~~c~L~~~~v~~~l~~il~~~~~F~~~~~~~~------~-~~---------- 603 (677)
T 3rip_A 541 SQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQNL------G-PL---------- 603 (677)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCC---------C----------
T ss_pred HHHHHhcccCCCHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhhc------c-cc----------
Confidence 999999999999999999999999999999999999999999999999999999986321 0 00
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhHHHHhhccccccchHHHHHHHHhccCCC
Q 005306 635 KFKRLKLRSLSQVQKVMIRDATVTESILKFEREFNNELQSLGPILSSSSQAEPYLTHLAQLVLGVGFD 702 (703)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~F~~~~~~l~~~L~~~~~~~~~~~~L~~lllrld~n 702 (703)
.+...+++.+++++|++++..|+++|++++ +.++.++|++||+|||||
T Consensus 604 -------------------~~~~~~~~~~l~~~F~~~~~~L~~~l~~l~-~~~~~~~l~~Ll~rLd~N 651 (677)
T 3rip_A 604 -------------------DERGAAQLSILVKGFSRQSSLLFKILSSVR-NHQINSDLAQLLLRLDYN 651 (677)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTSCCHHHHHHHHHHHHH
T ss_pred -------------------cchhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCchHHHHHHHHhCch
Confidence 111246899999999999999999999984 456779999999999998
No 2
>2jxc_B Stonin-2, stoned B; endocytosis, calcium, chromosomal rearrangement, cytoplasm, membrane, phosphorylation, polymorphism, proto-oncogene; NMR {Homo sapiens}
Probab=77.04 E-value=3.3 Score=27.56 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=26.9
Q ss_pred CCCCCCCCCcccCCCcCCccccchhhhhhhccccccCcccccCCCCCccchH
Q 005306 3 MSYPSTPRWNIERPFLTGRFHQETKAASRFADSFSNNGAEMAIGCYDAGVQE 54 (703)
Q Consensus 3 ~~~p~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qE 54 (703)
.++|..|+|...-|||..++- .-.|.||.+++.-..|
T Consensus 6 p~~~e~~Pw~atNPFLde~l~---------------dvqPSPINPFsafFeE 42 (45)
T 2jxc_B 6 PSVTEASPWRATNPFLNETLQ---------------DVQPSPINPFSAFFEE 42 (45)
T ss_dssp CCCSCCCCSCSSCSSSSTTTS---------------CCCCCTTCSCTTHHHH
T ss_pred CccccCCCcccCCcchhhhHH---------------hCCCCCCChHHHhhhh
Confidence 467888999999999998872 2224577777765544
No 3
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=44.55 E-value=1.2e+02 Score=24.45 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=40.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----CCCcHHHHHHhhhhHHHHHHHHHH
Q 005306 133 NGLVNHAFAASLRALLLDYEAMVAQLEHQFRL----GRLSIQGLWFYCQPMLGSMQAVSA 188 (703)
Q Consensus 133 ~g~v~~Al~~~l~~~L~~y~~~v~~lE~~~~~----~~lsL~~L~~~~~~~~~~l~~L~~ 188 (703)
+..+.+-++.-.++-|..|+..|.++|+.+.. ...|.+.|..-++.....+-.||.
T Consensus 6 P~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa 65 (93)
T 3t98_B 6 PADYFRVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAA 65 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34577888999999999999999999988643 356777776655555555544443
No 4
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=15.03 E-value=7.9e+02 Score=25.86 Aligned_cols=89 Identities=11% Similarity=0.037 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhHHHH--------------HHHHhhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 005306 102 LALQEMAKRIFPLCESFVL--------------TGQFVESRSQFKNGLVNHAFAASLRALLLDYEAMVAQLEHQFRLGRL 167 (703)
Q Consensus 102 ~sl~~l~~~il~lg~~~~~--------------l~~fv~~~~~~~~g~v~~Al~~~l~~~L~~y~~~v~~lE~~~~~~~l 167 (703)
..++.++.-+|.+|++... |.+..+..+.......+|-++..+++---+...+...|.+--....+
T Consensus 202 ~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~~p~l~~f~~eL~~v~~Aakv 281 (457)
T 3obv_E 202 ENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAELCENDHPEVLKFPDELAHVEKASRV 281 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTTCBCSSTTCBHHHHHHHHHHHHCGGGGGHHHHCTTHHHHTTC
T ss_pred HHHHHHHHHHHHHhhhhccCCcCCCeeeEehHHHHHHHhhhcCCCCccHHHHHHHHHHHcCccccCChhhhhhHHhhccC
Confidence 4456677777778776542 22222322222223445555555544222222222233221123567
Q ss_pred cHHHHHHhhhhHHHHHHHHHHHH
Q 005306 168 SIQGLWFYCQPMLGSMQAVSAVI 190 (703)
Q Consensus 168 sL~~L~~~~~~~~~~l~~L~~i~ 190 (703)
++..|...+......+..+..-+
T Consensus 282 s~~~l~~dl~~L~~~l~~v~~~l 304 (457)
T 3obv_E 282 SAENLQKSLDQMKKQIADVERDV 304 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877766665555555444433
No 5
>1w53_A Phosphoserine phosphatase RSBU; stress, kinase, hydrolase; 1.6A {Bacillus subtilis} SCOP: a.186.1.2
Probab=13.80 E-value=3.4e+02 Score=21.40 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=30.6
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHH
Q 005306 562 QTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYA 607 (703)
Q Consensus 562 ~~a~~~d~l~~~H~~fL~~i~~~c~L~-~~~l~~~l~~il~~c~~F~ 607 (703)
++.-..+|++..|.+++..+ .++ ..++...++=++.+..-|.
T Consensus 39 ek~i~PEeiV~iHk~~i~el----~~~l~e~v~~Sfd~L~Evm~gyG 81 (84)
T 1w53_A 39 EHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGYG 81 (84)
T ss_dssp HTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHHHHhC
Confidence 45668999999999877664 444 5677777777777666554
No 6
>2j6y_A Phosphoserine phosphatase RSBU; hydrolase, partner switching, protein phosphatase, RSBT, stress; 1.85A {Bacillus subtilis} PDB: 2j70_A 2j6z_A
Probab=13.13 E-value=5.8e+02 Score=21.22 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=37.1
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHH
Q 005306 561 LQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYAAATQ 611 (703)
Q Consensus 561 l~~a~~~d~l~~~H~~fL~~i~~~c~L~-~~~l~~~l~~il~~c~~F~~~~~ 611 (703)
+++.-..++++..|..++..+ ..+ ...+...++=++.+..-|.-.-+
T Consensus 38 iek~I~PEeiV~iHk~~i~~l----~~~l~e~v~~s~d~L~Evm~gyGlayr 85 (111)
T 2j6y_A 38 IEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGYGMAYQ 85 (111)
T ss_dssp HHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHHHHHHhHhHH
Confidence 445668999999999998887 566 56788888888888888886543
No 7
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=12.32 E-value=1.7e+02 Score=19.54 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 005306 137 NHAFAASLRALLLDYE 152 (703)
Q Consensus 137 ~~Al~~~l~~~L~~y~ 152 (703)
+.|+-.+++.+|.+|.
T Consensus 21 CnavrqALQdLlseY~ 36 (40)
T 4e17_B 21 CNAVRQALQDLLSEYM 36 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4455666666666664
No 8
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=11.26 E-value=1.7e+02 Score=20.20 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 005306 566 SIDEVIQHHDFFLDKCLRE 584 (703)
Q Consensus 566 ~~d~l~~~H~~fL~~i~~~ 584 (703)
|-+-+...|+.||..+.+.
T Consensus 25 D~~Fl~~iHeAYl~sl~~~ 43 (46)
T 2wx4_A 25 DKEFANKLHKAYLNGCSNL 43 (46)
T ss_dssp CTTHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4455778899999887754
No 9
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=10.54 E-value=2.3e+02 Score=20.01 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=13.2
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 005306 566 SIDEVIQHHDFFLDKCLR 583 (703)
Q Consensus 566 ~~d~l~~~H~~fL~~i~~ 583 (703)
|-+-+...|+.||..+.+
T Consensus 27 D~~Fl~~IHeAYl~sl~~ 44 (51)
T 2wx3_A 27 DSSFLSTLHEVYLQVLTK 44 (51)
T ss_dssp CHHHHHHHHHHHHHTTC-
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 566677889999987654
No 10
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=9.52 E-value=1.1e+03 Score=23.41 Aligned_cols=73 Identities=11% Similarity=0.104 Sum_probs=46.9
Q ss_pred hHHHHHHHHH----HHHHHHHHHHHHHHHHhchhcHHHHHHHh-ccCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 005306 523 AISRSSLLCR----SMLKFINSLLHYLTFEVLEPNWHVMHNRL-QTAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVE 597 (703)
Q Consensus 523 ~~~~~~~lr~----~m~~Fv~~l~~Y~~~~VIe~~w~~~~~~l-~~a~~~d~l~~~H~~fL~~i~~~c~L~~~~l~~~l~ 597 (703)
.+.+++.|.. -+-.+.+.+..|+...+.+- .... +...=+++|++.|+.| +.+...||-.++.+.+++.
T Consensus 269 dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~i-----v~~~~~~~~~V~~LL~l~~k~-~~iv~~~F~~d~~f~~al~ 342 (354)
T 4a64_A 269 DLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTI-----VINPEKDKTMRQELDDFKDKV-DHIIDICFLKNEKFINAMK 342 (354)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHH-----HHSCCSSSCHHHHHHHHHHHH-HHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHHHHHHHHH-----HcCccchHHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHH
Confidence 3455555443 23467777777776654321 1111 2234589999999976 5667789999999888888
Q ss_pred HHHH
Q 005306 598 RLKS 601 (703)
Q Consensus 598 ~il~ 601 (703)
+-+.
T Consensus 343 ~af~ 346 (354)
T 4a64_A 343 EAFE 346 (354)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
Done!