Query 005306
Match_columns 703
No_of_seqs 303 out of 867
Neff 8.6
Searched_HMMs 13730
Date Mon Mar 25 21:35:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005306.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005306hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1kxpd3 a.126.1.1 (D:405-473) 25.0 25 0.0018 24.6 2.8 26 565-593 32-57 (69)
2 d1rkta2 a.121.1.1 (A:83-205) H 23.7 1.5E+02 0.011 22.9 8.7 66 181-249 5-70 (123)
3 d2hyja2 a.121.1.1 (A:83-200) P 20.7 1.6E+02 0.012 22.2 7.9 49 198-249 24-72 (118)
4 d2hyec2 a.118.17.1 (C:55-401) 13.1 3.6E+02 0.026 24.5 9.9 64 534-603 279-343 (347)
5 d1ldja2 a.118.17.1 (A:17-410) 12.7 2.3E+02 0.017 26.5 8.4 74 523-602 302-385 (394)
6 d1w53a_ a.186.1.2 (A:) Phospho 10.2 2.8E+02 0.02 20.0 5.8 43 561-607 38-81 (84)
7 d2id3a2 a.121.1.1 (A:81-203) P 9.8 3.2E+02 0.023 20.7 6.8 50 197-249 23-72 (123)
8 d1pb6a2 a.121.1.1 (A:86-211) H 9.2 99 0.0072 24.0 3.2 35 215-249 35-69 (126)
9 d2i10a2 a.121.1.1 (A:79-194) P 8.9 79 0.0058 24.1 2.5 52 196-250 22-73 (116)
10 d1dvpa1 a.118.9.2 (A:1-145) Hr 5.5 6.2E+02 0.045 19.6 6.7 43 188-232 28-70 (145)
No 1
>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.01 E-value=25 Score=24.55 Aligned_cols=26 Identities=23% Similarity=0.650 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 005306 565 KSIDEVIQHHDFFLDKCLRECLLHLPDLL 593 (703)
Q Consensus 565 ~~~d~l~~~H~~fL~~i~~~c~L~~~~l~ 593 (703)
..+.++.+.|.+|-.+| |-+++|++.
T Consensus 32 ~~l~~mVekrsdfASkC---CsiNsPPlY 57 (69)
T d1kxpd3 32 KELAKLVNKRSDFASNC---CSINSPPLY 57 (69)
T ss_dssp HHHHHHHHHHHHHHHHH---SSTTCCHHH
T ss_pred HHHHHHHHHHhHHHHHh---hcCCCCchh
Confidence 47899999999998876 788888863
No 2
>d1rkta2 a.121.1.1 (A:83-205) Hypothetical transcriptional regulator YfiR {Bacillus subtilis [TaxId: 1423]}
Probab=23.66 E-value=1.5e+02 Score=22.87 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHccCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceEc
Q 005306 181 GSMQAVSAVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (703)
Q Consensus 181 ~~l~~L~~i~~~~~~~~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~ 249 (703)
..+.++..++..+.. .+-.+-.+.++......-||.++..+...+..-..-+..+|..++..|.+.
T Consensus 5 ~~~~~~d~~~~~l~~---~~~~~~~~~~E~~~~a~Rdpeir~~~~~~~~~~~~~l~~~i~~g~~~Ge~~ 70 (123)
T d1rkta2 5 SISSYLDELTEGLRD---VADTLAPVQFEYLVTAWRNEERRQYLEKRYDLFVERFSRLLQKGIDQGEFQ 70 (123)
T ss_dssp HHHHHHHHHHHHTTT---GGGSSHHHHHHHHHGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHh---cCcchHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 344555566665542 222233444454434467999999999999998888888888888888763
No 3
>d2hyja2 a.121.1.1 (A:83-200) Putative transcriptional regulator SCO4940 {Streptomyces coelicolor [TaxId: 1902]}
Probab=20.74 E-value=1.6e+02 Score=22.20 Aligned_cols=49 Identities=14% Similarity=0.033 Sum_probs=40.0
Q ss_pred CchhhHHHHHHHHHHHccCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceEc
Q 005306 198 FTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (703)
Q Consensus 198 ~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~ 249 (703)
..||-+.+..-+. ...|+.+++.+...+.....-+.+.|...+..|.+.
T Consensus 24 ~~GC~~~~~~~E~---~~~~~~ir~~l~~~~~~~~~~l~~~l~~a~~~G~i~ 72 (118)
T d2hyja2 24 PGGCLLTAALSEY---DGRPGRVRDAVAEVWSRWREQLRADLTAAVDKGELP 72 (118)
T ss_dssp TTSCHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCChhHhHHHHc---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3478888777664 467889999999999999888889999999888773
No 4
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.14 E-value=3.6e+02 Score=24.49 Aligned_cols=64 Identities=6% Similarity=0.100 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHhchhcHHHHHHHhc-cCCCHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q 005306 534 MLKFINSLLHYLTFEVLEPNWHVMHNRLQ-TAKSIDEVIQHHDFFLDKCLRECLLHLPDLLKKVERLKSLC 603 (703)
Q Consensus 534 m~~Fv~~l~~Y~~~~VIe~~w~~~~~~l~-~a~~~d~l~~~H~~fL~~i~~~c~L~~~~l~~~l~~il~~c 603 (703)
+..+.+.+..|+...+-+. ....+ ...=+++|+..|+.| +.+...||-.++.+.+++.+-+.-+
T Consensus 279 ~~~l~~~f~~~i~~~G~~~-----v~~~~~~~~~V~~ll~l~~k~-~~li~~~F~~d~~f~~~l~~af~~~ 343 (347)
T d2hyec2 279 QQALLQHWSEYIKTFGTAI-----VINPEKDKDMVQDLLDFKDKV-DHVIEVCFQKNERFVNLMKESFETF 343 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HSCGGGTTTHHHHHHHHHHHH-HHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HhCcccchHHHHHHHHHHHHH-HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3455566666665544211 11111 123378899999975 5667789999999988888876543
No 5
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.71 E-value=2.3e+02 Score=26.55 Aligned_cols=74 Identities=9% Similarity=0.075 Sum_probs=47.1
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHhchhcHHHHHHHhccCC------CHHHHHHHHHHHHHHHHHHhcCCChHH
Q 005306 523 AISRSSLLCRS----MLKFINSLLHYLTFEVLEPNWHVMHNRLQTAK------SIDEVIQHHDFFLDKCLRECLLHLPDL 592 (703)
Q Consensus 523 ~~~~~~~lr~~----m~~Fv~~l~~Y~~~~VIe~~w~~~~~~l~~a~------~~d~l~~~H~~fL~~i~~~c~L~~~~l 592 (703)
.+.+++.|..+ +-.+.+.+..|+...+.+ ..+...+.. =+++|+..|+. .+.+...||-.++.+
T Consensus 302 ~L~~lY~L~~rv~~~~~~l~~~~~~~I~~~G~~-----~i~~~~~~~~~~~~~~V~~ll~l~~~-~~~ii~~~F~~d~~f 375 (394)
T d1ldja2 302 DLGRMYNLVSRIQDGLGELKKLLETHIHNQGLA-----AIEKCGEAALNDPKMYVQTVLDVHKK-YNALVMSAFNNDAGF 375 (394)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-----HHHHHTTSGGGCHHHHHHHHHHHHHH-HHHHHHTTTTTCHHH
T ss_pred HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-----HHHhhhhcccCChHHHHHHHHHHHHH-HHHHHHHHcCCCHHH
Confidence 44555544433 355667777776665432 222222111 26889999886 567788999999998
Q ss_pred HHHHHHHHHH
Q 005306 593 LKKVERLKSL 602 (703)
Q Consensus 593 ~~~l~~il~~ 602 (703)
.+++.+-+.-
T Consensus 376 ~~~l~~af~~ 385 (394)
T d1ldja2 376 VAALDKACGR 385 (394)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887554
No 6
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=10.24 E-value=2.8e+02 Score=20.04 Aligned_cols=43 Identities=16% Similarity=0.281 Sum_probs=31.5
Q ss_pred hccCCCHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHH
Q 005306 561 LQTAKSIDEVIQHHDFFLDKCLRECLLH-LPDLLKKVERLKSLCLQYA 607 (703)
Q Consensus 561 l~~a~~~d~l~~~H~~fL~~i~~~c~L~-~~~l~~~l~~il~~c~~F~ 607 (703)
|++--+.+||+..|.+++..+ ..+ .+.+...++=++.+..-|.
T Consensus 38 iek~IsPEeIV~iHk~~l~el----~~~~~e~v~~Sfd~LlEVm~gyG 81 (84)
T d1w53a_ 38 IEHQIPPEEIISIHRKVLKEL----YPSLPEDVFHSLDFLIEVMIGYG 81 (84)
T ss_dssp HHTTCCHHHHHHHHHHHHHHH----CTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHH----CCCChHHHHHHHHHHHHHHHHcC
Confidence 455568999999999887764 455 4677778777777766554
No 7
>d2id3a2 a.121.1.1 (A:81-203) Putative transcriptional regulator SCO5951 {Streptomyces coelicolor [TaxId: 1902]}
Probab=9.79 E-value=3.2e+02 Score=20.69 Aligned_cols=50 Identities=10% Similarity=0.169 Sum_probs=37.5
Q ss_pred CCchhhHHHHHHHHHHHccCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceEc
Q 005306 197 NFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (703)
Q Consensus 197 ~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~ 249 (703)
...|+.++-.+...+ ..+|.....+..++...-.-+-.++.+.+-.|++.
T Consensus 23 ~p~~~~~~~~l~ae~---~~~p~l~~~~~~~~~~r~~~~~~il~rA~~RGEl~ 72 (123)
T d2id3a2 23 DPRQGRLFRALIAAS---LCNEQAAEALHRFYAVRVDEWAGCVRDAVARGEVP 72 (123)
T ss_dssp SHHHHHHHHHHHHHH---HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CcchHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345666666555443 45678888888888888888889999999999984
No 8
>d1pb6a2 a.121.1.1 (A:86-211) Hypothetical transcriptional regulator YcdC {Escherichia coli [TaxId: 562]}
Probab=9.18 E-value=99 Score=24.00 Aligned_cols=35 Identities=17% Similarity=0.268 Sum_probs=26.5
Q ss_pred cCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceEc
Q 005306 215 AGDNTVRSLLEKMTQCASNAYLGILERWVYEGVID 249 (703)
Q Consensus 215 ~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~ 249 (703)
+|.+..+..+...+........+.|+.|+-.|.+.
T Consensus 35 ~~~~~l~~~~~~~~~~~~~~~~~il~~g~~~G~~r 69 (126)
T d1pb6a2 35 AGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLA 69 (126)
T ss_dssp TTCTTTHHHHHTHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence 45555666666777777777888999999999774
No 9
>d2i10a2 a.121.1.1 (A:79-194) Putative transcriptional regulator RHA1_ro09068 {Rhodococcus sp. [TaxId: 1831]}
Probab=8.93 E-value=79 Score=24.12 Aligned_cols=52 Identities=12% Similarity=0.099 Sum_probs=41.0
Q ss_pred CCCchhhHHHHHHHHHHHccCChHHHHHHHHHHHHHhHHHHHHHHHHHhhceEcC
Q 005306 196 NNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCASNAYLGILERWVYEGVIDD 250 (703)
Q Consensus 196 ~~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~~py~~~l~~Wi~~G~l~D 250 (703)
...+||-+.+...+. ...|+.+++.+...+.....-+...|.+-...|.+.+
T Consensus 22 ~~p~GCl~~~~~~E~---~~~d~~i~~~l~~~~~~~~~~l~~~l~~a~~~Gel~~ 73 (116)
T d2i10a2 22 GQPFGCMTVQAGLAS---GEPHHEIVDLLTAAREQMRQTVLDRFEKALADGDLPA 73 (116)
T ss_dssp ----CCCCSSCBTTT---BCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCT
T ss_pred CCCCCCHHHHhHhhc---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 456788888777653 3578999999999999999999999999999998854
No 10
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=5.46 E-value=6.2e+02 Score=19.60 Aligned_cols=43 Identities=2% Similarity=0.021 Sum_probs=23.7
Q ss_pred HHHHHhhcCCCchhhHHHHHHHHHHHccCChHHHHHHHHHHHHHh
Q 005306 188 AVIHKASANNFTGSAVLNLLQSQAKAMAGDNTVRSLLEKMTQCAS 232 (703)
Q Consensus 188 ~i~~~~~~~~~~g~~lL~~L~~~~~~~~Gd~~~~~ll~~Ll~~~~ 232 (703)
+||+.+..........+..|.++. .+++|.++-....|+..|.
T Consensus 28 ~icD~I~~~~~~~k~a~ral~krl--~~~n~~v~l~aL~LLd~~v 70 (145)
T d1dvpa1 28 LICDEINQKDVTPKNAFAAIKKKM--NSPNPHSSCYSLLVLESIV 70 (145)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHH--TCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCccHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHH
Confidence 344444322223345677777775 4788877665555555443
Done!