BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005307
         (703 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TX3|A Chain A, Cysz, A Putative Sulfate Permease
 pdb|3TX3|B Chain B, Cysz, A Putative Sulfate Permease
          Length = 249

 Score = 32.0 bits (71), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 25  LLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIVLFLLEQQG 71
           LL +KV RY     +G E  L + KD  R L  +++K++ ++    G
Sbjct: 107 LLAEKVERYESGESLGDEGFLGLFKDIPRTLKREMQKLMYYIPRALG 153


>pdb|1EFX|D Chain D, Structure Of A Complex Between The Human Natural Killer
           Cell Receptor Kir2dl2 And A Class I Mhc Ligand Hla-Cw3
 pdb|1EFX|E Chain E, Structure Of A Complex Between The Human Natural Killer
           Cell Receptor Kir2dl2 And A Class I Mhc Ligand Hla-Cw3
          Length = 200

 Score = 31.6 bits (70), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 65  FLLEQQGALASRLSDLGEHHDALSQ--HQDGSRISELQEAYRAVG 107
           FLL ++G     L  +GEHHD +S+     G  + +L   YR  G
Sbjct: 37  FLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYG 81


>pdb|2DL2|A Chain A, Killer Immunoglobulin Receptor 2dl2
          Length = 197

 Score = 31.6 bits (70), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 65  FLLEQQGALASRLSDLGEHHDALSQ--HQDGSRISELQEAYRAVG 107
           FLL ++G     L  +GEHHD +S+     G  + +L   YR  G
Sbjct: 34  FLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYG 78


>pdb|2DLI|A Chain A, Killer Immunoglobulin Receptor 2dl2,Trigonal Form
          Length = 197

 Score = 31.6 bits (70), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 65  FLLEQQGALASRLSDLGEHHDALSQ--HQDGSRISELQEAYRAVG 107
           FLL ++G     L  +GEHHD +S+     G  + +L   YR  G
Sbjct: 34  FLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYG 78


>pdb|1M4K|A Chain A, Crystal Structure Of The Human Natural Killer Cell
           Activator Receptor Kir2ds2 (Cd158j)
          Length = 200

 Score = 30.8 bits (68), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 65  FLLEQQGALASRLSDLGEHHDALSQ--HQDGSRISELQEAYRAVG 107
           FLL ++G     L  +GEHHD +S+     G  + +L   YR  G
Sbjct: 37  FLLHREGKYKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYG 81


>pdb|1B6U|A Chain A, Crystal Structure Of The Human Killer Cell Inhibitory
           Receptor (Kir2dl3) Specific For Hla-Cw3 Related Alleles
          Length = 257

 Score = 29.3 bits (64), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 65  FLLEQQGALASRLSDLGEHHDALSQHQ--DGSRISELQEAYRAVG 107
           FLL ++G     L  +GEHHD +S+     G  + +L   YR  G
Sbjct: 37  FLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYG 81


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,739,213
Number of Sequences: 62578
Number of extensions: 645710
Number of successful extensions: 1398
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1395
Number of HSP's gapped (non-prelim): 12
length of query: 703
length of database: 14,973,337
effective HSP length: 106
effective length of query: 597
effective length of database: 8,340,069
effective search space: 4979021193
effective search space used: 4979021193
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)