Query 005307
Match_columns 703
No_of_seqs 727 out of 3504
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 21:24:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1161 Protein involved in va 100.0 3.2E-36 6.9E-41 281.1 19.8 172 2-180 1-173 (310)
2 COG2814 AraJ Arabinose efflux 100.0 2.3E-33 4.9E-38 280.6 32.7 348 244-672 9-363 (394)
3 TIGR01299 synapt_SV2 synaptic 100.0 3.8E-34 8.3E-39 315.2 28.3 411 243-666 162-705 (742)
4 PRK03545 putative arabinose tr 100.0 1.5E-31 3.2E-36 282.8 35.4 346 245-672 6-357 (390)
5 PRK10213 nepI ribonucleoside t 100.0 1.3E-30 2.9E-35 274.7 37.0 347 244-672 16-368 (394)
6 COG2271 UhpC Sugar phosphate p 100.0 5.4E-31 1.2E-35 258.8 30.9 396 243-700 24-435 (448)
7 PRK14995 methyl viologen resis 100.0 3.8E-31 8.3E-36 287.4 31.9 395 246-666 4-408 (495)
8 TIGR02332 HpaX 4-hydroxyphenyl 100.0 4.2E-31 9.2E-36 280.2 30.9 380 244-672 4-397 (412)
9 PRK11551 putative 3-hydroxyphe 100.0 2.3E-30 4.9E-35 275.8 36.5 350 243-666 10-365 (406)
10 PRK11663 regulatory protein Uh 100.0 1.1E-29 2.3E-34 271.8 34.8 366 245-671 20-400 (434)
11 PRK09556 uhpT sugar phosphate 100.0 3.3E-30 7.2E-35 278.5 29.3 367 246-669 27-411 (467)
12 TIGR00903 2A0129 major facilit 100.0 1.7E-29 3.8E-34 262.0 32.5 327 260-666 3-337 (368)
13 PF03105 SPX: SPX domain; Int 100.0 1.1E-31 2.4E-36 269.3 15.6 147 2-148 1-275 (275)
14 PRK10642 proline/glycine betai 100.0 3.1E-29 6.7E-34 272.3 33.9 358 247-666 15-399 (490)
15 TIGR00711 efflux_EmrB drug res 100.0 1E-29 2.2E-34 277.7 30.1 392 249-666 3-405 (485)
16 TIGR00900 2A0121 H+ Antiporter 100.0 6.1E-30 1.3E-34 268.6 27.0 345 252-666 3-358 (365)
17 PRK15402 multidrug efflux syst 100.0 1.2E-28 2.7E-33 262.1 36.3 348 246-666 11-365 (406)
18 TIGR00891 2A0112 putative sial 100.0 1.2E-29 2.6E-34 270.5 28.5 377 244-672 8-392 (405)
19 PF07690 MFS_1: Major Facilita 100.0 5.5E-30 1.2E-34 267.6 25.2 343 254-662 2-352 (352)
20 PRK10406 alpha-ketoglutarate t 100.0 1.2E-28 2.6E-33 263.7 36.0 346 246-666 20-394 (432)
21 KOG1162 Predicted small molecu 100.0 7.4E-31 1.6E-35 270.6 17.3 169 2-177 1-200 (617)
22 PRK10091 MFS transport protein 100.0 1E-28 2.2E-33 260.1 34.2 339 249-669 4-349 (382)
23 TIGR00893 2A0114 d-galactonate 100.0 3.5E-29 7.7E-34 266.0 30.3 359 258-670 4-373 (399)
24 PRK10504 putative transporter; 100.0 1.9E-28 4.1E-33 266.1 35.3 390 249-671 11-416 (471)
25 PRK11646 multidrug resistance 100.0 2.3E-28 5E-33 258.2 34.4 341 251-670 13-359 (400)
26 TIGR00710 efflux_Bcr_CflA drug 100.0 2.3E-28 5E-33 258.7 34.2 343 248-663 5-354 (385)
27 PRK03699 putative transporter; 100.0 2.8E-28 6.1E-33 257.9 34.8 346 246-672 5-357 (394)
28 TIGR00890 2A0111 Oxalate/Forma 100.0 4.8E-29 1E-33 263.1 28.6 329 264-666 19-352 (377)
29 PRK12307 putative sialic acid 100.0 2E-28 4.3E-33 262.6 33.6 355 244-666 14-378 (426)
30 TIGR00892 2A0113 monocarboxyla 100.0 2.2E-28 4.8E-33 262.6 33.4 375 241-672 12-397 (455)
31 COG2223 NarK Nitrate/nitrite t 100.0 6.4E-29 1.4E-33 245.0 26.7 382 244-701 10-403 (417)
32 PRK03633 putative MFS family t 100.0 2.9E-28 6.3E-33 256.7 33.2 339 248-672 6-349 (381)
33 PRK09952 shikimate transporter 100.0 5.7E-28 1.2E-32 258.5 35.0 355 242-666 16-401 (438)
34 TIGR00895 2A0115 benzoate tran 100.0 1.2E-28 2.6E-33 262.1 28.5 377 244-666 13-395 (398)
35 PRK15075 citrate-proton sympor 100.0 1.2E-27 2.6E-32 256.2 35.9 363 245-672 12-396 (434)
36 PRK05122 major facilitator sup 100.0 4.4E-28 9.5E-33 257.5 32.1 337 245-666 12-359 (399)
37 PLN00028 nitrate transmembrane 100.0 8.1E-28 1.8E-32 259.5 34.3 355 246-664 34-402 (476)
38 PRK09874 drug efflux system pr 100.0 9.9E-28 2.1E-32 255.9 34.2 341 248-666 14-368 (408)
39 PRK10054 putative transporter; 100.0 4.9E-28 1.1E-32 255.3 31.3 346 249-672 8-361 (395)
40 TIGR00899 2A0120 sugar efflux 100.0 9.1E-28 2E-32 253.1 32.8 339 254-672 3-351 (375)
41 PRK09705 cynX putative cyanate 100.0 7.6E-28 1.6E-32 254.0 31.8 326 264-672 25-357 (393)
42 PRK11652 emrD multidrug resist 100.0 4.1E-27 8.8E-32 249.5 36.0 345 246-666 6-355 (394)
43 PRK11273 glpT sn-glycerol-3-ph 100.0 1.7E-27 3.7E-32 256.3 33.5 372 245-672 26-412 (452)
44 PRK15403 multidrug efflux syst 100.0 3.8E-27 8.2E-32 249.9 35.2 341 253-666 21-368 (413)
45 TIGR00894 2A0114euk Na(+)-depe 100.0 1.1E-27 2.4E-32 259.5 30.9 367 244-666 15-417 (465)
46 TIGR00881 2A0104 phosphoglycer 100.0 4.6E-28 1E-32 255.8 26.8 359 257-670 4-372 (379)
47 TIGR00897 2A0118 polyol permea 100.0 5.6E-27 1.2E-31 248.5 34.8 356 247-672 12-378 (402)
48 PRK11195 lysophospholipid tran 100.0 1.1E-27 2.5E-32 252.3 29.3 349 250-672 5-357 (393)
49 PRK10473 multidrug efflux syst 100.0 1.1E-26 2.3E-31 246.1 35.8 342 249-672 4-351 (392)
50 PRK11102 bicyclomycin/multidru 100.0 5.3E-27 1.1E-31 247.4 33.3 333 261-664 4-342 (377)
51 PRK12382 putative transporter; 100.0 2.5E-27 5.5E-32 250.9 30.8 340 248-672 15-366 (392)
52 PRK10489 enterobactin exporter 100.0 1.2E-27 2.6E-32 255.4 28.1 349 251-672 20-376 (417)
53 PRK10133 L-fucose transporter; 100.0 1.3E-26 2.9E-31 246.8 35.4 351 246-666 24-402 (438)
54 PRK10077 xylE D-xylose transpo 100.0 5.4E-28 1.2E-32 263.5 25.2 387 244-666 8-421 (479)
55 TIGR00886 2A0108 nitrite extru 100.0 3.4E-27 7.3E-32 247.9 29.5 350 250-650 3-360 (366)
56 PRK03893 putative sialic acid 100.0 1.1E-26 2.4E-31 254.3 34.7 371 244-672 16-430 (496)
57 TIGR00879 SP MFS transporter, 100.0 4.4E-28 9.4E-33 264.7 23.3 383 250-666 30-440 (481)
58 PRK15034 nitrate/nitrite trans 100.0 7.5E-27 1.6E-31 243.0 31.2 388 244-701 30-456 (462)
59 TIGR00887 2A0109 phosphate:H+ 100.0 2.5E-27 5.4E-32 258.4 28.9 390 244-666 12-449 (502)
60 TIGR00902 2A0127 phenyl propri 100.0 1.5E-26 3.3E-31 243.4 33.0 343 251-672 7-357 (382)
61 PRK11043 putative transporter; 100.0 4.9E-26 1.1E-30 241.9 35.7 338 250-666 8-352 (401)
62 TIGR00712 glpT glycerol-3-phos 100.0 3.2E-26 6.9E-31 245.5 32.7 374 246-672 25-410 (438)
63 KOG2615 Permease of the major 100.0 6.5E-27 1.4E-31 225.3 23.9 338 279-670 64-414 (451)
64 TIGR00898 2A0119 cation transp 100.0 4.5E-27 9.8E-32 257.7 25.3 352 269-666 110-467 (505)
65 cd06174 MFS The Major Facilita 100.0 3.9E-26 8.5E-31 238.3 30.3 314 252-666 3-322 (352)
66 PRK15011 sugar efflux transpor 100.0 2.3E-25 5E-30 235.5 35.4 339 250-670 17-366 (393)
67 PF05977 MFS_3: Transmembrane 99.9 1.1E-25 2.4E-30 240.5 30.4 354 246-672 8-371 (524)
68 PRK11128 putative 3-phenylprop 99.9 2.5E-25 5.4E-30 234.3 32.7 337 256-672 12-357 (382)
69 PRK11010 ampG muropeptide tran 99.9 4.6E-25 1E-29 238.4 34.9 355 246-672 10-380 (491)
70 KOG1330 Sugar transporter/spin 99.9 2E-27 4.3E-32 235.9 14.6 365 244-672 29-414 (493)
71 TIGR00885 fucP L-fucose:H+ sym 99.9 7.6E-25 1.7E-29 231.2 34.2 354 249-669 4-380 (410)
72 KOG2325 Predicted transporter/ 99.9 6.6E-26 1.4E-30 232.0 24.1 382 239-673 25-453 (488)
73 KOG0569 Permease of the major 99.9 8.2E-26 1.8E-30 233.6 23.8 345 284-663 61-422 (485)
74 TIGR00883 2A0106 metabolite-pr 99.9 6.2E-25 1.3E-29 233.2 30.3 346 259-666 4-370 (394)
75 TIGR00882 2A0105 oligosacchari 99.9 2E-24 4.4E-29 228.9 33.1 356 249-672 3-372 (396)
76 PRK08633 2-acyl-glycerophospho 99.9 3E-25 6.4E-30 267.9 30.2 358 249-666 10-379 (1146)
77 PRK06814 acylglycerophosphoeth 99.9 4.4E-25 9.5E-30 265.1 30.1 315 283-666 52-391 (1140)
78 PRK09528 lacY galactoside perm 99.9 9.2E-25 2E-29 233.3 29.2 356 248-672 10-380 (420)
79 COG5036 SPX domain-containing 99.9 1.6E-26 3.4E-31 219.8 13.6 165 2-180 1-165 (509)
80 KOG3764 Vesicular amine transp 99.9 4.6E-26 9.9E-31 220.9 16.8 330 280-691 103-446 (464)
81 TIGR00896 CynX cyanate transpo 99.9 4.8E-25 1E-29 230.2 26.0 328 262-672 14-350 (355)
82 PRK11902 ampG muropeptide tran 99.9 1.4E-23 3.1E-28 222.6 34.1 343 254-672 5-367 (402)
83 TIGR00901 2A0125 AmpG-related 99.9 3E-24 6.5E-29 224.3 27.9 326 264-650 4-352 (356)
84 KOG2532 Permease of the major 99.9 4.4E-24 9.6E-29 224.1 28.3 333 276-666 66-414 (466)
85 TIGR00889 2A0110 nucleoside tr 99.9 1.1E-23 2.5E-28 223.3 28.9 343 253-672 7-373 (418)
86 TIGR00924 yjdL_sub1_fam amino 99.9 4.8E-23 1E-27 221.6 31.7 395 248-666 10-438 (475)
87 TIGR02718 sider_RhtX_FptX side 99.9 2.3E-22 5E-27 212.7 33.9 351 250-672 3-368 (390)
88 KOG0253 Synaptic vesicle trans 99.9 1.4E-23 3.1E-28 200.6 21.0 393 243-665 73-490 (528)
89 TIGR00806 rfc RFC reduced fola 99.9 3.4E-21 7.3E-26 196.0 35.8 339 268-648 46-394 (511)
90 PRK10207 dipeptide/tripeptide 99.9 4.2E-22 9.1E-27 214.1 31.1 394 245-666 11-436 (489)
91 COG0738 FucP Fucose permease [ 99.9 2.2E-21 4.7E-26 190.4 31.7 358 249-672 14-386 (422)
92 KOG0254 Predicted transporter 99.9 6.8E-23 1.5E-27 223.5 23.2 364 250-648 47-436 (513)
93 TIGR00792 gph sugar (Glycoside 99.9 4.7E-22 1E-26 214.1 29.0 346 262-671 13-381 (437)
94 KOG2533 Permease of the major 99.9 1.4E-22 3.1E-27 213.0 24.1 324 269-638 67-399 (495)
95 TIGR01301 GPH_sucrose GPH fami 99.9 9.3E-21 2E-25 199.1 33.3 366 250-666 6-439 (477)
96 TIGR00805 oat sodium-independe 99.9 1.4E-22 3.1E-27 223.7 20.3 307 252-593 37-412 (633)
97 KOG0255 Synaptic vesicle trans 99.9 3.7E-22 8E-27 219.2 23.0 350 276-666 111-463 (521)
98 KOG2504 Monocarboxylate transp 99.9 1E-20 2.2E-25 201.4 31.8 402 242-673 40-453 (509)
99 PF00083 Sugar_tr: Sugar (and 99.9 3.2E-26 6.9E-31 247.4 -12.4 373 254-666 6-406 (451)
100 PF06609 TRI12: Fungal trichot 99.9 1.6E-20 3.5E-25 199.5 29.5 377 262-665 58-461 (599)
101 COG2807 CynX Cyanate permease 99.9 3.3E-20 7.2E-25 179.2 28.4 352 263-700 27-386 (395)
102 PF03825 Nuc_H_symport: Nucleo 99.9 5.1E-20 1.1E-24 191.5 31.4 350 254-675 8-369 (400)
103 PRK09584 tppB putative tripept 99.9 4E-20 8.6E-25 200.1 31.0 381 248-663 21-436 (500)
104 COG5408 SPX domain-containing 99.9 1.3E-21 2.9E-26 183.0 11.7 52 97-148 241-292 (296)
105 KOG0252 Inorganic phosphate tr 99.9 4.4E-21 9.6E-26 189.8 14.8 388 245-666 38-463 (538)
106 PRK10429 melibiose:sodium symp 99.9 3E-19 6.6E-24 193.1 28.7 357 255-672 13-395 (473)
107 PRK09669 putative symporter Ya 99.9 4.6E-19 1E-23 190.5 29.6 337 271-672 33-390 (444)
108 PTZ00207 hypothetical protein; 99.9 3.7E-19 7.9E-24 190.8 28.4 395 243-665 23-503 (591)
109 PF01306 LacY_symp: LacY proto 99.8 4.3E-19 9.4E-24 180.4 27.1 355 249-672 8-377 (412)
110 KOG4686 Predicted sugar transp 99.8 5.7E-21 1.2E-25 176.1 9.7 357 252-669 48-413 (459)
111 PF11700 ATG22: Vacuole efflux 99.8 4.5E-18 9.8E-23 180.3 31.9 335 283-672 70-444 (477)
112 PRK09848 glucuronide transport 99.8 1.8E-18 3.9E-23 186.3 27.7 350 247-666 7-383 (448)
113 COG2211 MelB Na+/melibiose sym 99.8 1.4E-17 2.9E-22 171.0 30.1 363 246-672 10-398 (467)
114 TIGR00788 fbt folate/biopterin 99.8 1.6E-18 3.5E-23 186.0 24.4 364 249-672 27-415 (468)
115 PRK15462 dipeptide/tripeptide 99.8 1.6E-17 3.5E-22 175.5 30.3 391 246-665 7-434 (493)
116 PF13347 MFS_2: MFS/sugar tran 99.8 1.3E-18 2.9E-23 186.0 22.1 334 270-666 24-379 (428)
117 PRK11462 putative transporter; 99.8 4E-16 8.6E-21 167.5 31.6 346 255-666 16-382 (460)
118 PF03209 PUCC: PUCC protein; 99.8 6.2E-16 1.4E-20 154.2 29.8 359 274-698 6-394 (403)
119 TIGR01272 gluP glucose/galacto 99.8 9E-17 1.9E-21 162.7 23.6 271 336-672 8-292 (310)
120 COG2270 Permeases of the major 99.8 8.5E-17 1.9E-21 159.5 22.2 335 282-673 57-406 (438)
121 KOG2816 Predicted transporter 99.7 4.5E-16 9.8E-21 162.9 24.1 308 292-666 71-387 (463)
122 COG3104 PTR2 Dipeptide/tripept 99.7 4E-14 8.7E-19 144.0 25.8 387 246-666 19-451 (498)
123 KOG2563 Permease of the major 99.6 2.2E-14 4.8E-19 143.1 22.1 360 244-663 41-413 (480)
124 PF03137 OATP: Organic Anion T 99.6 3.2E-16 7E-21 168.6 -0.1 385 252-666 7-509 (539)
125 KOG3626 Organic anion transpor 99.5 7.3E-13 1.6E-17 142.1 19.0 296 249-578 98-457 (735)
126 PF05631 DUF791: Protein of un 99.5 2.6E-11 5.7E-16 119.4 27.1 268 257-592 43-321 (354)
127 TIGR00880 2_A_01_02 Multidrug 99.5 3.3E-13 7.1E-18 120.0 10.5 134 288-434 3-141 (141)
128 TIGR00889 2A0110 nucleoside tr 99.5 1.4E-12 3E-17 138.7 17.0 179 255-437 215-408 (418)
129 TIGR01299 synapt_SV2 synaptic 99.4 2.7E-12 5.9E-17 142.7 18.4 137 286-436 598-738 (742)
130 PRK10642 proline/glycine betai 99.4 3.2E-12 7E-17 139.1 18.6 169 258-440 260-438 (490)
131 PF01770 Folate_carrier: Reduc 99.4 6.4E-10 1.4E-14 113.0 32.0 345 267-648 22-381 (412)
132 PRK05122 major facilitator sup 99.4 2E-11 4.4E-16 129.7 19.6 157 261-432 229-390 (399)
133 PRK15011 sugar efflux transpor 99.4 2.5E-11 5.4E-16 128.5 18.2 155 264-433 232-392 (393)
134 PF03092 BT1: BT1 family; Int 99.3 6.4E-11 1.4E-15 125.5 19.9 345 269-672 11-382 (433)
135 TIGR00902 2A0127 phenyl propri 99.3 4.8E-11 1E-15 125.7 18.2 163 249-426 206-374 (382)
136 TIGR00890 2A0111 Oxalate/Forma 99.3 1.9E-11 4E-16 128.8 14.9 150 262-424 219-375 (377)
137 PRK12382 putative transporter; 99.3 5.6E-11 1.2E-15 125.9 18.6 156 261-431 229-389 (392)
138 cd06174 MFS The Major Facilita 99.3 4.4E-11 9.5E-16 124.6 17.2 166 250-428 177-349 (352)
139 PRK09874 drug efflux system pr 99.3 3.1E-11 6.7E-16 128.8 16.3 162 260-434 231-401 (408)
140 PRK09528 lacY galactoside perm 99.3 1.9E-11 4.1E-16 130.7 14.6 146 278-436 257-408 (420)
141 PRK11551 putative 3-hydroxyphe 99.3 4.7E-11 1E-15 127.2 17.4 154 265-430 237-395 (406)
142 PRK09705 cynX putative cyanate 99.3 1.8E-10 3.9E-15 121.8 20.6 175 252-439 209-389 (393)
143 PRK10489 enterobactin exporter 99.3 1.2E-10 2.6E-15 124.5 18.8 157 267-436 242-404 (417)
144 PRK03545 putative arabinose tr 99.3 1.7E-10 3.6E-15 122.1 19.0 152 269-434 226-383 (390)
145 TIGR00899 2A0120 sugar efflux 99.3 1.4E-10 3.1E-15 122.0 18.1 147 268-428 219-371 (375)
146 TIGR00879 SP MFS transporter, 99.3 1.1E-10 2.5E-15 127.2 16.9 179 248-436 284-475 (481)
147 PRK03633 putative MFS family t 99.3 3.1E-10 6.6E-15 119.7 19.4 150 262-427 214-368 (381)
148 TIGR00892 2A0113 monocarboxyla 99.2 5.6E-11 1.2E-15 128.0 13.6 163 250-425 243-415 (455)
149 PRK09556 uhpT sugar phosphate 99.2 2.5E-10 5.4E-15 123.7 17.1 178 249-429 259-447 (467)
150 TIGR00897 2A0118 polyol permea 99.2 3.7E-10 8E-15 119.9 17.9 168 251-429 225-399 (402)
151 TIGR00893 2A0114 d-galactonate 99.2 3.8E-10 8.2E-15 119.7 17.6 172 248-429 215-397 (399)
152 PRK03893 putative sialic acid 99.2 4.6E-10 9.9E-15 123.1 18.4 145 267-422 294-444 (496)
153 PRK03699 putative transporter; 99.2 3E-10 6.6E-15 120.2 16.3 166 250-429 207-378 (394)
154 KOG0637 Sucrose transporter an 99.2 1.4E-09 3E-14 109.2 17.9 148 248-395 32-202 (498)
155 PRK11128 putative 3-phenylprop 99.1 1.7E-09 3.6E-14 114.1 18.4 160 251-425 208-373 (382)
156 TIGR00883 2A0106 metabolite-pr 99.1 4.6E-10 1E-14 119.0 13.8 149 250-399 221-379 (394)
157 PRK11663 regulatory protein Uh 99.1 1.8E-09 3.8E-14 115.9 17.7 173 250-433 245-426 (434)
158 PF05977 MFS_3: Transmembrane 99.1 2.4E-09 5.2E-14 115.3 18.0 157 258-427 228-390 (524)
159 PRK09952 shikimate transporter 99.1 3.5E-09 7.5E-14 113.6 18.9 167 259-434 261-435 (438)
160 PRK10077 xylE D-xylose transpo 99.1 2.3E-09 5E-14 117.0 17.6 163 264-436 287-462 (479)
161 PRK10054 putative transporter; 99.1 9.5E-10 2.1E-14 116.2 14.0 148 512-666 6-153 (395)
162 PRK12307 putative sialic acid 99.1 1.7E-09 3.8E-14 116.0 16.2 132 267-399 250-386 (426)
163 PF06963 FPN1: Ferroportin1 (F 99.1 6.2E-08 1.3E-12 100.7 26.7 363 249-661 3-408 (432)
164 COG2814 AraJ Arabinose efflux 99.1 6.4E-09 1.4E-13 105.3 18.4 171 247-432 210-387 (394)
165 PRK11273 glpT sn-glycerol-3-ph 99.1 3E-09 6.5E-14 114.7 17.2 170 249-429 254-433 (452)
166 KOG3762 Predicted transporter 99.1 1.4E-09 3.1E-14 111.1 13.3 181 504-695 361-543 (618)
167 TIGR00895 2A0115 benzoate tran 99.1 2.1E-09 4.6E-14 114.1 15.5 141 252-395 254-397 (398)
168 TIGR00891 2A0112 putative sial 99.1 2.1E-09 4.5E-14 114.5 15.5 130 266-398 256-392 (405)
169 PRK10504 putative transporter; 99.1 4E-09 8.7E-14 114.7 17.9 147 249-395 262-412 (471)
170 KOG0569 Permease of the major 99.1 8.7E-09 1.9E-13 107.7 18.5 182 246-438 268-461 (485)
171 TIGR00900 2A0121 H+ Antiporter 99.0 2.7E-09 5.8E-14 111.8 15.0 124 269-395 232-360 (365)
172 PF11700 ATG22: Vacuole efflux 99.0 9.4E-09 2E-13 109.5 18.3 178 247-434 280-470 (477)
173 KOG3098 Uncharacterized conser 99.0 2.2E-07 4.7E-12 96.4 27.3 301 289-648 56-393 (461)
174 TIGR00924 yjdL_sub1_fam amino 99.0 3.3E-09 7.1E-14 114.6 14.7 147 514-666 11-162 (475)
175 PRK15075 citrate-proton sympor 99.0 9E-09 2E-13 110.5 17.4 142 258-399 248-397 (434)
176 PRK15462 dipeptide/tripeptide 99.0 4.6E-09 9.9E-14 111.6 14.7 150 512-666 8-159 (493)
177 TIGR02718 sider_RhtX_FptX side 99.0 7.5E-09 1.6E-13 109.5 16.3 162 254-425 214-385 (390)
178 PRK11646 multidrug resistance 99.0 3.8E-09 8.1E-14 111.9 13.7 144 516-666 13-156 (400)
179 TIGR00882 2A0105 oligosacchari 99.0 6E-09 1.3E-13 110.5 14.9 147 270-429 237-393 (396)
180 TIGR00898 2A0119 cation transp 99.0 7.7E-09 1.7E-13 113.6 15.8 146 273-436 348-499 (505)
181 PRK08633 2-acyl-glycerophospho 99.0 6.8E-09 1.5E-13 126.1 16.6 152 262-424 246-403 (1146)
182 TIGR00887 2A0109 phosphate:H+ 99.0 1.5E-08 3.3E-13 110.8 17.8 173 263-436 303-493 (502)
183 TIGR00712 glpT glycerol-3-phos 99.0 1E-08 2.2E-13 110.3 15.7 174 251-435 254-437 (438)
184 TIGR00792 gph sugar (Glycoside 99.0 7.4E-09 1.6E-13 111.5 14.7 147 251-400 225-384 (437)
185 PF07690 MFS_1: Major Facilita 99.0 7.8E-09 1.7E-13 107.7 14.4 140 520-666 3-142 (352)
186 PRK11010 ampG muropeptide tran 99.0 8.8E-08 1.9E-12 104.1 22.8 154 270-434 244-405 (491)
187 PRK15402 multidrug efflux syst 99.0 2.4E-08 5.2E-13 106.3 17.9 130 269-399 236-373 (406)
188 PRK09584 tppB putative tripept 98.9 1.2E-08 2.6E-13 110.9 15.4 148 514-666 22-171 (500)
189 PF02487 CLN3: CLN3 protein; 98.9 1.4E-07 3.1E-12 96.1 21.9 135 285-435 61-199 (402)
190 PRK10213 nepI ribonucleoside t 98.9 4.1E-08 8.8E-13 103.8 18.8 140 271-424 240-384 (394)
191 PRK10406 alpha-ketoglutarate t 98.9 3.5E-08 7.6E-13 105.8 17.8 163 261-433 256-425 (432)
192 COG2271 UhpC Sugar phosphate p 98.9 3.2E-08 7E-13 99.0 15.3 176 247-433 251-436 (448)
193 PRK10207 dipeptide/tripeptide 98.9 1.5E-08 3.2E-13 109.6 14.2 155 512-671 13-170 (489)
194 KOG4686 Predicted sugar transp 98.9 4.9E-08 1.1E-12 91.5 15.3 118 273-395 290-411 (459)
195 TIGR00896 CynX cyanate transpo 98.9 3.8E-08 8.3E-13 102.7 16.4 135 257-395 206-345 (355)
196 COG2270 Permeases of the major 98.9 2.1E-08 4.6E-13 100.4 13.3 173 249-434 253-431 (438)
197 PRK14995 methyl viologen resis 98.9 2.5E-08 5.5E-13 108.8 15.3 145 251-395 262-410 (495)
198 PRK11195 lysophospholipid tran 98.9 6.2E-08 1.3E-12 102.4 17.6 143 270-425 227-374 (393)
199 PRK10091 MFS transport protein 98.9 3E-08 6.5E-13 104.5 15.0 146 513-666 3-148 (382)
200 TIGR02332 HpaX 4-hydroxyphenyl 98.9 1.9E-08 4.1E-13 107.0 13.6 130 529-666 24-153 (412)
201 TIGR00711 efflux_EmrB drug res 98.9 3.9E-08 8.5E-13 107.5 15.7 141 518-666 7-147 (485)
202 KOG2504 Monocarboxylate transp 98.9 2.1E-08 4.6E-13 107.5 13.0 170 248-429 298-474 (509)
203 PLN00028 nitrate transmembrane 98.8 3.3E-08 7.2E-13 107.1 14.4 149 269-432 273-433 (476)
204 PRK06814 acylglycerophosphoeth 98.8 3.8E-08 8.3E-13 119.1 15.9 166 251-424 228-415 (1140)
205 TIGR00886 2A0108 nitrite extru 98.8 2.9E-08 6.4E-13 104.1 13.2 144 515-666 3-147 (366)
206 TIGR00885 fucP L-fucose:H+ sym 98.8 5.3E-08 1.2E-12 103.2 13.8 147 515-666 5-151 (410)
207 PF03825 Nuc_H_symport: Nucleo 98.8 1.7E-07 3.6E-12 98.1 17.2 182 248-435 207-399 (400)
208 PRK15034 nitrate/nitrite trans 98.8 7.1E-08 1.5E-12 101.5 14.3 147 512-663 33-181 (462)
209 TIGR01272 gluP glucose/galacto 98.8 1.7E-07 3.7E-12 95.1 16.7 158 246-419 138-303 (310)
210 TIGR00710 efflux_Bcr_CflA drug 98.8 3.7E-08 7.9E-13 104.1 12.4 136 523-666 15-150 (385)
211 PF13347 MFS_2: MFS/sugar tran 98.8 1.3E-07 2.9E-12 101.3 15.6 151 248-399 225-387 (428)
212 PRK11043 putative transporter; 98.8 8.7E-08 1.9E-12 101.9 13.8 140 520-666 10-151 (401)
213 PRK09848 glucuronide transport 98.8 9.2E-08 2E-12 103.2 14.2 150 250-400 230-392 (448)
214 KOG4332 Predicted sugar transp 98.8 7.8E-08 1.7E-12 89.3 11.1 317 256-647 45-384 (454)
215 PRK10473 multidrug efflux syst 98.7 1.1E-07 2.4E-12 100.8 14.1 143 516-666 6-148 (392)
216 KOG3574 Acetyl-CoA transporter 98.7 2.9E-06 6.3E-11 83.3 21.5 348 247-658 30-418 (510)
217 KOG3762 Predicted transporter 98.7 8.1E-08 1.8E-12 98.6 11.2 165 251-428 374-544 (618)
218 TIGR00894 2A0114euk Na(+)-depe 98.7 3.5E-07 7.6E-12 99.3 17.2 176 246-429 259-448 (465)
219 TIGR00881 2A0104 phosphoglycer 98.7 9.4E-08 2E-12 100.6 12.3 149 250-399 218-375 (379)
220 COG0477 ProP Permeases of the 98.7 4.4E-07 9.6E-12 92.4 16.8 162 254-423 8-177 (338)
221 TIGR00903 2A0129 major facilit 98.7 4.7E-07 1E-11 94.3 17.0 166 250-433 194-366 (368)
222 TIGR00901 2A0125 AmpG-related 98.7 1.3E-07 2.8E-12 98.8 12.9 133 250-382 211-355 (356)
223 PF06813 Nodulin-like: Nodulin 98.7 4.2E-07 9.2E-12 87.2 15.2 127 267-395 21-154 (250)
224 KOG3764 Vesicular amine transp 98.7 5.1E-08 1.1E-12 96.4 8.8 138 544-694 101-239 (464)
225 PRK10133 L-fucose transporter; 98.7 1.7E-07 3.7E-12 100.3 13.5 147 515-666 28-174 (438)
226 TIGR00769 AAA ADP/ATP carrier 98.7 5.4E-05 1.2E-09 80.0 31.6 149 247-395 6-188 (472)
227 PRK11902 ampG muropeptide tran 98.7 5.1E-07 1.1E-11 95.9 16.9 142 272-429 234-388 (402)
228 COG2223 NarK Nitrate/nitrite t 98.7 3.1E-07 6.8E-12 92.2 14.0 171 248-430 218-400 (417)
229 PF01306 LacY_symp: LacY proto 98.7 5.2E-07 1.1E-11 92.7 16.0 154 271-437 243-406 (412)
230 PRK10429 melibiose:sodium symp 98.7 1.9E-07 4.2E-12 101.2 13.3 152 249-400 232-397 (473)
231 PRK11652 emrD multidrug resist 98.6 2.7E-07 5.8E-12 97.9 13.1 141 518-666 13-153 (394)
232 PRK11102 bicyclomycin/multidru 98.6 1.5E-07 3.3E-12 99.1 10.7 130 529-666 7-136 (377)
233 PRK15403 multidrug efflux syst 98.6 3.4E-07 7.3E-12 97.4 13.1 127 532-666 35-161 (413)
234 TIGR00806 rfc RFC reduced fola 98.6 3.8E-07 8.1E-12 94.3 12.5 124 536-667 48-172 (511)
235 PRK09669 putative symporter Ya 98.6 5.9E-07 1.3E-11 96.8 14.3 144 256-400 237-392 (444)
236 KOG3810 Micronutrient transpor 98.6 8.9E-06 1.9E-10 79.0 20.0 301 296-648 55-367 (433)
237 COG2807 CynX Cyanate permease 98.6 4E-06 8.7E-11 82.5 17.3 166 250-429 210-383 (395)
238 PF03209 PUCC: PUCC protein; 98.5 2E-06 4.4E-11 86.7 15.4 173 256-428 216-395 (403)
239 KOG1330 Sugar transporter/spin 98.5 1.6E-07 3.4E-12 95.1 7.2 149 540-698 59-208 (493)
240 TIGR00926 2A1704 Peptide:H+ sy 98.5 2.6E-05 5.7E-10 86.3 25.2 152 274-429 14-180 (654)
241 COG3104 PTR2 Dipeptide/tripept 98.5 1E-06 2.2E-11 90.7 11.9 150 513-666 21-176 (498)
242 TIGR00880 2_A_01_02 Multidrug 98.5 4.5E-07 9.8E-12 80.0 7.6 104 556-666 5-108 (141)
243 COG0738 FucP Fucose permease [ 98.4 1.3E-06 2.9E-11 87.1 10.9 140 523-666 22-161 (422)
244 TIGR00805 oat sodium-independe 98.4 2.6E-07 5.7E-12 102.9 6.7 135 528-666 47-229 (633)
245 PTZ00207 hypothetical protein; 98.4 3E-06 6.6E-11 91.9 14.3 122 536-663 49-174 (591)
246 KOG2615 Permease of the major 98.4 1E-06 2.2E-11 86.9 9.3 113 546-666 65-177 (451)
247 KOG0253 Synaptic vesicle trans 98.4 1.2E-06 2.6E-11 85.7 9.5 125 293-432 391-519 (528)
248 TIGR01301 GPH_sucrose GPH fami 98.4 3.5E-06 7.6E-11 89.5 13.6 148 515-667 6-174 (477)
249 PF13000 Acatn: Acetyl-coenzym 98.4 0.00012 2.7E-09 75.3 23.1 377 251-661 3-457 (544)
250 TIGR00788 fbt folate/biopterin 98.3 2.5E-06 5.5E-11 91.9 10.8 123 276-398 281-415 (468)
251 COG2211 MelB Na+/melibiose sym 98.3 8.5E-06 1.8E-10 84.8 13.4 151 248-399 236-399 (467)
252 PF06609 TRI12: Fungal trichot 98.3 1.3E-05 2.8E-10 86.6 14.6 150 539-700 69-218 (599)
253 PF12832 MFS_1_like: MFS_1 lik 98.3 3.3E-06 7.2E-11 64.7 7.4 67 253-319 5-71 (77)
254 PRK11462 putative transporter; 98.3 2.7E-05 5.8E-10 84.0 17.1 144 256-400 236-391 (460)
255 PF05978 UNC-93: Ion channel r 98.2 4E-05 8.6E-10 67.8 13.2 105 288-395 42-148 (156)
256 KOG2532 Permease of the major 98.2 3.1E-05 6.8E-10 82.3 14.4 175 248-429 258-445 (466)
257 PF06779 DUF1228: Protein of u 98.2 9.2E-06 2E-10 62.7 7.5 78 261-341 5-83 (85)
258 KOG0254 Predicted transporter 98.1 8.7E-05 1.9E-09 81.4 16.9 181 247-438 294-490 (513)
259 KOG0252 Inorganic phosphate tr 98.1 9.7E-06 2.1E-10 82.1 8.1 186 248-438 304-504 (538)
260 COG3202 ATP/ADP translocase [E 97.9 0.03 6.6E-07 58.2 29.3 146 246-395 25-207 (509)
261 PF03219 TLC: TLC ATP/ADP tran 97.9 0.012 2.6E-07 62.8 27.7 148 247-395 23-203 (491)
262 PF00083 Sugar_tr: Sugar (and 97.8 2E-07 4.3E-12 100.9 -9.8 166 262-439 267-444 (451)
263 PF06813 Nodulin-like: Nodulin 97.7 0.00032 6.8E-09 67.6 11.5 123 535-663 23-149 (250)
264 KOG2533 Permease of the major 97.7 0.00032 6.8E-09 75.0 11.3 149 248-399 273-434 (495)
265 KOG0255 Synaptic vesicle trans 97.6 0.0018 3.9E-08 71.4 16.9 164 263-439 333-500 (521)
266 KOG2325 Predicted transporter/ 97.6 0.00023 4.9E-09 74.5 8.7 150 513-667 34-187 (488)
267 PF12832 MFS_1_like: MFS_1 lik 97.6 0.00045 9.8E-09 53.0 8.0 71 517-589 4-74 (77)
268 KOG2816 Predicted transporter 97.6 0.00086 1.9E-08 71.1 12.7 117 276-395 270-389 (463)
269 KOG1237 H+/oligopeptide sympor 97.4 0.041 8.8E-07 60.2 24.0 174 243-426 32-240 (571)
270 KOG1479 Nucleoside transporter 97.4 0.013 2.7E-07 59.9 18.4 129 529-662 259-396 (406)
271 KOG2563 Permease of the major 97.3 0.0035 7.7E-08 64.1 13.2 124 538-666 69-197 (480)
272 TIGR00926 2A1704 Peptide:H+ sy 97.3 0.001 2.2E-08 74.0 10.0 136 528-666 2-145 (654)
273 TIGR00939 2a57 Equilibrative N 97.3 0.038 8.3E-07 58.6 21.3 56 605-663 371-426 (437)
274 PF05631 DUF791: Protein of un 97.3 0.0053 1.1E-07 61.5 13.5 89 542-635 62-150 (354)
275 PRK03612 spermidine synthase; 97.3 0.0078 1.7E-07 65.4 15.8 122 277-399 44-175 (521)
276 KOG3097 Predicted membrane pro 97.1 0.041 8.9E-07 53.9 16.7 100 293-395 68-180 (390)
277 PF00854 PTR2: POT family; In 97.0 0.0034 7.4E-08 65.8 9.6 104 315-428 3-120 (372)
278 KOG3880 Predicted small molecu 96.7 0.026 5.6E-07 54.6 12.2 137 285-436 64-204 (409)
279 KOG4830 Predicted sugar transp 96.6 0.0017 3.7E-08 60.7 3.4 66 250-315 19-93 (412)
280 KOG2601 Iron transporter [Inor 96.6 0.13 2.7E-06 51.4 16.1 147 249-395 28-198 (503)
281 PF06963 FPN1: Ferroportin1 (F 96.3 0.29 6.3E-06 51.5 18.2 128 268-395 278-415 (432)
282 PF03137 OATP: Organic Anion T 96.2 0.001 2.3E-08 72.4 -0.6 136 527-666 16-198 (539)
283 KOG0637 Sucrose transporter an 96.2 0.027 5.8E-07 57.9 9.3 145 514-663 33-197 (498)
284 PF05978 UNC-93: Ion channel r 96.2 0.089 1.9E-06 46.7 11.6 100 556-663 44-143 (156)
285 PF02487 CLN3: CLN3 protein; 96.0 0.11 2.5E-06 53.6 13.2 108 281-395 279-394 (402)
286 PRK03612 spermidine synthase; 96.0 0.11 2.3E-06 56.6 13.4 57 518-575 19-75 (521)
287 KOG3098 Uncharacterized conser 95.7 0.15 3.2E-06 53.7 12.6 146 249-395 241-411 (461)
288 PF03092 BT1: BT1 family; Int 95.5 0.16 3.5E-06 54.2 12.6 127 536-666 12-145 (433)
289 COG0477 ProP Permeases of the 94.7 0.36 7.8E-06 48.4 12.0 114 549-666 39-153 (338)
290 TIGR00939 2a57 Equilibrative N 94.1 0.96 2.1E-05 48.1 13.6 147 248-395 269-431 (437)
291 PF06779 DUF1228: Protein of u 93.6 0.45 9.7E-06 37.0 7.4 67 530-598 9-75 (85)
292 KOG4460 Nuclear pore complex, 93.5 2.2 4.8E-05 44.4 14.1 110 6-119 561-680 (741)
293 TIGR00769 AAA ADP/ATP carrier 93.3 0.97 2.1E-05 48.3 11.9 145 513-666 7-186 (472)
294 KOG3626 Organic anion transpor 92.7 0.092 2E-06 58.0 3.4 132 531-666 114-294 (735)
295 PF09602 PhaP_Bmeg: Polyhydrox 92.6 4.7 0.0001 35.3 12.9 72 65-136 82-153 (165)
296 PF01770 Folate_carrier: Reduc 92.3 0.86 1.9E-05 47.3 9.6 126 533-666 23-150 (412)
297 PF00854 PTR2: POT family; In 92.1 0.32 6.9E-06 50.9 6.6 84 581-666 2-93 (372)
298 KOG1479 Nucleoside transporter 90.3 1.8 4E-05 44.6 9.5 126 268-394 263-401 (406)
299 KOG4332 Predicted sugar transp 89.1 0.3 6.5E-06 46.5 2.7 95 536-635 59-154 (454)
300 COG4262 Predicted spermidine s 88.0 16 0.00035 36.7 13.5 86 278-363 38-132 (508)
301 PF07672 MFS_Mycoplasma: Mycop 86.6 9.9 0.00022 36.7 11.1 52 368-429 2-60 (267)
302 PF01733 Nucleoside_tran: Nucl 86.4 0.26 5.6E-06 50.0 0.6 56 605-663 247-302 (309)
303 PF05461 ApoL: Apolipoprotein 85.4 10 0.00022 38.0 11.2 35 22-56 34-68 (313)
304 PF10146 zf-C4H2: Zinc finger- 85.0 17 0.00037 34.5 11.9 93 15-120 5-100 (230)
305 PF13758 Prefoldin_3: Prefoldi 84.7 2.4 5.3E-05 33.6 5.0 24 12-35 3-26 (99)
306 PF04420 CHD5: CHD5-like prote 83.1 5.8 0.00013 35.5 7.6 70 68-137 40-109 (161)
307 PF07889 DUF1664: Protein of u 82.6 17 0.00037 30.7 9.6 42 48-89 41-82 (126)
308 PF01733 Nucleoside_tran: Nucl 82.5 0.44 9.6E-06 48.3 0.3 108 287-394 186-306 (309)
309 PF10168 Nup88: Nuclear pore c 80.8 61 0.0013 36.9 16.1 33 94-133 632-664 (717)
310 KOG3810 Micronutrient transpor 76.9 16 0.00034 37.0 8.8 142 283-430 271-420 (433)
311 KOG0570 Transcriptional coacti 76.6 37 0.00081 30.7 10.1 49 48-97 87-135 (223)
312 KOG0977 Nuclear envelope prote 76.5 17 0.00037 39.0 9.6 38 96-137 351-388 (546)
313 PF10112 Halogen_Hydrol: 5-bro 74.2 28 0.00061 32.5 9.7 75 66-140 73-154 (199)
314 KOG3880 Predicted small molecu 72.7 13 0.00028 36.8 6.9 105 283-395 288-401 (409)
315 COG4026 Uncharacterized protei 71.3 28 0.0006 32.0 8.2 15 19-33 101-115 (290)
316 COG1971 Predicted membrane pro 71.0 84 0.0018 28.7 14.5 43 554-596 141-183 (190)
317 PRK11546 zraP zinc resistance 70.8 40 0.00086 29.2 8.7 58 57-114 50-109 (143)
318 KOG1451 Oligophrenin-1 and rel 69.8 59 0.0013 34.8 11.3 24 112-135 115-138 (812)
319 TIGR01837 PHA_granule_1 poly(h 69.6 49 0.0011 27.8 9.0 25 91-115 93-117 (118)
320 COG4262 Predicted spermidine s 68.1 77 0.0017 32.1 11.1 29 605-633 104-132 (508)
321 PF03915 AIP3: Actin interacti 66.8 91 0.002 32.8 12.1 82 49-130 201-282 (424)
322 KOG1237 H+/oligopeptide sympor 65.9 48 0.001 36.7 10.6 121 516-637 40-183 (571)
323 KOG3807 Predicted membrane pro 65.3 1.1E+02 0.0025 30.4 11.5 27 104-135 315-341 (556)
324 KOG2196 Nuclear porin [Nuclear 65.2 96 0.0021 29.3 10.5 100 15-114 65-198 (254)
325 PF04799 Fzo_mitofusin: fzo-li 64.8 77 0.0017 28.4 9.5 89 14-113 74-163 (171)
326 smart00806 AIP3 Actin interact 64.8 1.2E+02 0.0026 31.6 12.1 80 49-128 205-284 (426)
327 PF04341 DUF485: Protein of un 64.1 45 0.00098 26.4 7.4 58 503-560 6-63 (91)
328 COG2233 UraA Xanthine/uracil p 63.9 45 0.00097 35.3 9.3 115 527-643 27-141 (451)
329 TIGR02865 spore_II_E stage II 62.8 64 0.0014 37.2 11.2 105 14-133 366-479 (764)
330 KOG0396 Uncharacterized conser 62.8 39 0.00084 34.0 8.0 24 15-38 8-31 (389)
331 PF10805 DUF2730: Protein of u 62.3 47 0.001 27.2 7.4 44 68-114 42-85 (106)
332 PHA02675 ORF104 fusion protein 62.2 68 0.0015 24.4 8.1 40 99-138 49-88 (90)
333 PF10267 Tmemb_cc2: Predicted 61.2 95 0.0021 32.3 10.9 35 54-88 237-271 (395)
334 PRK11469 hypothetical protein; 60.7 1.4E+02 0.003 27.5 14.9 51 546-596 131-181 (188)
335 PF03219 TLC: TLC ATP/ADP tran 59.4 41 0.00089 36.4 8.4 38 626-666 164-201 (491)
336 KOG4466 Component of histone d 59.4 85 0.0018 30.3 9.3 81 48-131 15-105 (291)
337 COG3937 Uncharacterized conser 59.2 95 0.0021 25.2 9.2 83 22-115 22-104 (108)
338 KOG0933 Structural maintenance 58.9 1.1E+02 0.0024 35.4 11.5 34 102-135 907-940 (1174)
339 TIGR01834 PHA_synth_III_E poly 58.8 1.3E+02 0.0029 30.1 11.1 59 57-115 252-310 (320)
340 PF11947 DUF3464: Protein of u 58.8 20 0.00043 31.5 4.8 50 336-387 95-145 (153)
341 TIGR02231 conserved hypothetic 58.7 68 0.0015 35.3 10.3 81 22-114 72-172 (525)
342 PF09712 PHA_synth_III_E: Poly 58.5 1.3E+02 0.0027 30.1 11.1 25 91-115 269-293 (293)
343 TIGR00844 c_cpa1 na(+)/h(+) an 56.9 3.6E+02 0.0078 31.1 20.4 13 381-393 110-122 (810)
344 KOG2629 Peroxisomal membrane a 56.4 1.1E+02 0.0023 29.9 9.5 59 53-116 139-197 (300)
345 TIGR01666 YCCS hypothetical me 56.0 87 0.0019 35.7 10.6 51 302-354 42-97 (704)
346 PF10498 IFT57: Intra-flagella 56.0 84 0.0018 32.3 9.6 20 14-33 216-235 (359)
347 PRK00293 dipZ thiol:disulfide 56.0 3.3E+02 0.0071 30.3 15.1 51 547-597 323-379 (571)
348 PHA01750 hypothetical protein 55.7 62 0.0013 23.3 5.8 26 54-83 46-71 (75)
349 PF14193 DUF4315: Domain of un 54.5 71 0.0015 24.8 6.6 31 53-87 4-34 (83)
350 PF01025 GrpE: GrpE; InterPro 54.5 1.6E+02 0.0035 26.3 10.4 35 52-86 20-54 (165)
351 PF05149 Flagellar_rod: Parafl 53.9 2.3E+02 0.0051 28.0 12.3 21 115-135 133-153 (289)
352 COG3619 Predicted membrane pro 53.8 2E+02 0.0044 27.3 17.7 65 248-312 12-84 (226)
353 cd07635 BAR_GRAF2 The Bin/Amph 53.8 1.9E+02 0.0042 27.0 11.4 30 53-82 5-34 (207)
354 PF07672 MFS_Mycoplasma: Mycop 53.5 58 0.0013 31.6 7.4 102 286-387 144-254 (267)
355 KOG3838 Mannose lectin ERGIC-5 53.2 2E+02 0.0043 29.4 11.1 32 96-127 379-410 (497)
356 PRK11020 hypothetical protein; 53.1 81 0.0018 25.8 6.9 48 70-117 7-54 (118)
357 PF11947 DUF3464: Protein of u 52.3 50 0.0011 29.0 6.2 40 605-648 96-135 (153)
358 COG1422 Predicted membrane pro 51.2 59 0.0013 29.8 6.6 39 68-106 72-110 (201)
359 PF03904 DUF334: Domain of unk 51.0 2.2E+02 0.0047 26.8 11.5 10 24-33 46-55 (230)
360 PF00901 Orbi_VP5: Orbivirus o 50.9 3.3E+02 0.0072 28.9 13.2 81 49-130 111-201 (508)
361 PF01544 CorA: CorA-like Mg2+ 50.8 2.3E+02 0.005 28.0 12.1 64 59-129 116-179 (292)
362 PF05700 BCAS2: Breast carcino 50.6 1.9E+02 0.0042 27.4 10.6 59 52-115 152-210 (221)
363 PF01540 Lipoprotein_7: Adhesi 50.5 2.4E+02 0.0051 27.1 11.6 27 109-135 197-223 (353)
364 cd07636 BAR_GRAF The Bin/Amphi 50.2 2.2E+02 0.0048 26.6 11.2 28 53-80 5-32 (207)
365 PF09403 FadA: Adhesion protei 50.1 1.6E+02 0.0034 25.0 8.6 35 52-86 29-63 (126)
366 PRK05771 V-type ATP synthase s 49.5 4.4E+02 0.0096 29.9 29.8 28 248-275 351-378 (646)
367 TIGR01667 YCCS_YHJK integral m 49.5 1E+02 0.0022 35.2 9.8 52 301-354 41-97 (701)
368 PRK14147 heat shock protein Gr 49.4 1.3E+02 0.0027 27.3 8.6 14 122-135 97-110 (172)
369 smart00787 Spc7 Spc7 kinetocho 48.2 2.7E+02 0.0058 28.1 11.6 20 11-32 132-151 (312)
370 TIGR00383 corA magnesium Mg(2+ 48.0 2.3E+02 0.0049 28.7 11.5 62 62-130 143-204 (318)
371 PF10168 Nup88: Nuclear pore c 47.7 1.9E+02 0.0041 33.1 11.5 21 94-114 685-705 (717)
372 PRK14139 heat shock protein Gr 47.2 1.4E+02 0.003 27.4 8.5 15 121-135 110-124 (185)
373 PRK10884 SH3 domain-containing 46.9 1.4E+02 0.003 28.0 8.7 33 54-86 104-136 (206)
374 PF01581 FARP: FMRFamide relat 46.9 7.3 0.00016 17.4 0.2 6 1-6 6-11 (11)
375 PF08317 Spc7: Spc7 kinetochor 46.9 2E+02 0.0043 29.3 10.7 22 10-33 136-157 (325)
376 PRK11637 AmiB activator; Provi 46.6 2.1E+02 0.0045 30.6 11.3 13 301-313 310-322 (428)
377 PF12711 Kinesin-relat_1: Kine 46.5 1.1E+02 0.0024 23.9 6.6 55 23-82 26-84 (86)
378 PF13000 Acatn: Acetyl-coenzym 46.1 2.6E+02 0.0057 30.2 11.4 133 251-385 281-454 (544)
379 KOG4094 Uncharacterized conser 45.9 38 0.00081 28.9 4.2 12 65-76 102-113 (178)
380 PF10498 IFT57: Intra-flagella 45.7 2.9E+02 0.0062 28.6 11.5 23 91-113 325-347 (359)
381 TIGR00801 ncs2 uracil-xanthine 45.6 2E+02 0.0042 30.6 10.9 38 532-570 21-58 (415)
382 PF06825 HSBP1: Heat shock fac 45.4 84 0.0018 22.1 5.2 40 49-88 9-48 (54)
383 PF13097 CENP-U: CENP-A nucleo 42.9 2.5E+02 0.0055 25.3 9.2 38 96-133 137-174 (175)
384 PF07352 Phage_Mu_Gam: Bacteri 42.7 1.4E+02 0.0031 26.3 7.8 38 49-86 20-57 (149)
385 KOG3850 Predicted membrane pro 42.5 3.5E+02 0.0075 27.7 10.8 35 52-86 283-317 (455)
386 PF11657 Activator-TraM: Trans 42.4 2.3E+02 0.0051 24.7 11.0 26 98-123 103-128 (144)
387 PRK00578 prfB peptide chain re 42.3 3.5E+02 0.0075 28.0 11.4 92 19-114 21-112 (367)
388 PRK10263 DNA translocase FtsK; 41.6 1.8E+02 0.0039 35.4 10.3 21 558-579 61-81 (1355)
389 PF02787 CPSase_L_D3: Carbamoy 41.4 1.1E+02 0.0024 25.9 6.6 27 57-83 30-56 (123)
390 PF12805 FUSC-like: FUSC-like 41.4 1.2E+02 0.0026 30.2 8.0 29 324-354 11-39 (284)
391 PF01496 V_ATPase_I: V-type AT 41.3 53 0.0011 38.1 6.3 27 249-275 369-395 (759)
392 KOG4253 Tryptophan-rich basic 40.8 1.5E+02 0.0032 25.9 7.0 6 115-120 71-76 (175)
393 KOG0250 DNA repair protein RAD 40.7 1.9E+02 0.004 34.1 10.0 12 51-62 388-399 (1074)
394 KOG0447 Dynamin-like GTP bindi 40.7 2.2E+02 0.0048 30.6 9.7 22 93-114 274-295 (980)
395 PRK15015 carbon starvation pro 40.5 5.7E+02 0.012 28.7 18.3 100 292-399 10-113 (701)
396 PF12805 FUSC-like: FUSC-like 40.0 1.4E+02 0.003 29.7 8.3 11 21-31 193-203 (284)
397 PF14712 Snapin_Pallidin: Snap 39.8 1.6E+02 0.0034 23.2 7.1 20 66-85 62-81 (92)
398 KOG2896 UV radiation resistanc 39.7 3.6E+02 0.0077 27.5 10.5 65 59-123 108-181 (377)
399 PLN02320 seryl-tRNA synthetase 39.6 4.6E+02 0.01 28.5 12.2 26 12-38 59-84 (502)
400 KOG2129 Uncharacterized conser 39.6 3.6E+02 0.0079 27.8 10.6 70 49-118 189-270 (552)
401 COG5336 Uncharacterized protei 39.5 85 0.0018 25.5 5.1 28 290-317 49-77 (116)
402 PF07304 SRA1: Steroid recepto 39.3 1.5E+02 0.0032 26.5 7.3 40 47-86 43-83 (157)
403 KOG3758 Uncharacterized conser 39.2 2.9E+02 0.0062 30.3 10.4 34 53-86 56-89 (655)
404 KOG3091 Nuclear pore complex, 39.1 5.1E+02 0.011 27.7 15.4 52 68-119 383-439 (508)
405 PF15290 Syntaphilin: Golgi-lo 39.1 3.8E+02 0.0081 26.1 11.0 18 21-38 68-85 (305)
406 TIGR01837 PHA_granule_1 poly(h 39.1 79 0.0017 26.5 5.4 37 51-87 79-115 (118)
407 PF05300 DUF737: Protein of un 39.1 1.5E+02 0.0033 27.1 7.4 30 51-80 135-167 (187)
408 PF06912 DUF1275: Protein of u 38.9 3.3E+02 0.0072 25.4 15.7 21 375-395 165-185 (209)
409 KOG2604 Subunit of cis-Golgi t 38.9 4.4E+02 0.0095 29.4 11.8 119 4-133 74-197 (733)
410 PRK01905 DNA-binding protein F 38.6 1.3E+02 0.0029 22.8 6.1 32 101-132 44-75 (77)
411 PF07760 DUF1616: Protein of u 38.3 2E+02 0.0043 28.7 9.0 55 341-395 22-77 (287)
412 KOG4094 Uncharacterized conser 38.2 2.6E+02 0.0057 24.0 8.7 23 62-84 65-87 (178)
413 PRK14162 heat shock protein Gr 38.1 3.3E+02 0.0072 25.2 9.8 14 122-135 120-133 (194)
414 PF14788 EF-hand_10: EF hand; 37.8 53 0.0011 22.7 3.3 16 21-36 2-17 (51)
415 PF04346 EutH: Ethanolamine ut 37.7 4.6E+02 0.01 26.8 17.4 108 283-399 47-165 (354)
416 COG2233 UraA Xanthine/uracil p 37.7 1.5E+02 0.0033 31.4 8.3 125 246-372 14-141 (451)
417 PRK09546 zntB zinc transporter 37.5 4.5E+02 0.0098 26.6 11.9 64 59-130 148-211 (324)
418 KOG1281 Na+/dicarboxylate, Na+ 37.1 21 0.00046 38.5 2.0 43 106-148 7-51 (586)
419 TIGR03545 conserved hypothetic 36.8 1.4E+02 0.0031 32.8 8.3 17 108-124 262-278 (555)
420 KOG4302 Microtubule-associated 36.2 1.5E+02 0.0033 33.1 8.2 92 51-145 291-394 (660)
421 PF10393 Matrilin_ccoil: Trime 36.0 1.4E+02 0.003 20.3 5.9 33 48-84 14-46 (47)
422 PF10267 Tmemb_cc2: Predicted 36.0 2E+02 0.0043 30.0 8.6 65 22-86 5-73 (395)
423 PF08287 DASH_Spc19: Spc19; I 35.9 1.5E+02 0.0031 26.3 6.7 65 21-85 28-92 (153)
424 PF08317 Spc7: Spc7 kinetochor 35.7 4.4E+02 0.0096 26.8 11.2 21 91-111 206-226 (325)
425 PF09236 AHSP: Alpha-haemoglob 35.6 86 0.0019 24.0 4.3 49 13-74 37-85 (89)
426 COG1345 FliD Flagellar capping 35.5 1.7E+02 0.0038 31.5 8.5 15 21-35 372-386 (483)
427 PF04880 NUDE_C: NUDE protein, 35.2 60 0.0013 29.0 4.2 13 49-61 3-15 (166)
428 TIGR00020 prfB peptide chain r 35.1 5.3E+02 0.011 26.7 11.4 20 19-38 21-40 (364)
429 COG0598 CorA Mg2+ and Co2+ tra 35.1 5E+02 0.011 26.4 12.7 67 60-133 146-212 (322)
430 COG5570 Uncharacterized small 34.8 1.5E+02 0.0033 20.3 6.2 47 68-114 5-53 (57)
431 PF02694 UPF0060: Uncharacteri 34.4 69 0.0015 26.0 3.9 51 548-599 53-103 (107)
432 PLN02372 violaxanthin de-epoxi 34.1 4.7E+02 0.01 27.2 10.5 7 26-32 335-341 (455)
433 PF04740 LXG: LXG domain of WX 34.0 2.7E+02 0.0059 25.9 8.9 16 22-37 25-40 (204)
434 PF08687 ASD2: Apx/Shroom doma 34.0 4.6E+02 0.0099 25.6 14.4 77 57-133 137-222 (264)
435 PF04880 NUDE_C: NUDE protein, 34.0 92 0.002 27.9 5.1 41 66-115 5-45 (166)
436 PF04184 ST7: ST7 protein; In 34.0 2.1E+02 0.0046 30.6 8.4 21 110-135 305-325 (539)
437 PF02990 EMP70: Endomembrane p 33.8 4.7E+02 0.01 28.7 11.8 23 556-579 304-326 (521)
438 PRK13676 hypothetical protein; 33.8 1.4E+02 0.003 24.9 6.0 16 19-34 21-36 (114)
439 PF02554 CstA: Carbon starvati 33.8 5.5E+02 0.012 26.5 15.9 35 362-399 47-82 (376)
440 KOG1664 Vacuolar H+-ATPase V1 33.6 3.9E+02 0.0084 24.7 11.3 24 52-75 41-64 (220)
441 PRK14157 heat shock protein Gr 33.4 2.8E+02 0.0061 26.3 8.4 18 70-87 93-110 (227)
442 PF14782 BBS2_C: Ciliary BBSom 33.2 4.3E+02 0.0093 28.1 10.7 85 51-135 305-395 (431)
443 PF07303 Occludin_ELL: Occludi 33.1 1.8E+02 0.0039 23.6 6.3 22 94-115 73-94 (101)
444 PF03904 DUF334: Domain of unk 33.0 2.3E+02 0.0049 26.7 7.5 18 46-63 93-110 (230)
445 PF12018 DUF3508: Domain of un 32.9 5E+02 0.011 25.8 11.8 87 49-136 61-150 (281)
446 PF11299 DUF3100: Protein of u 32.8 20 0.00044 33.6 0.9 50 345-395 178-229 (241)
447 PRK14155 heat shock protein Gr 32.7 3.8E+02 0.0082 25.2 9.2 14 122-135 97-110 (208)
448 KOG0933 Structural maintenance 32.5 8E+02 0.017 28.9 12.9 69 19-87 233-306 (1174)
449 KOG3574 Acetyl-CoA transporter 32.5 2.4E+02 0.0051 29.4 8.2 127 259-387 276-420 (510)
450 cd07633 BAR_OPHN1 The Bin/Amph 32.2 4.2E+02 0.0092 24.7 10.5 24 56-79 8-31 (207)
451 COG1283 NptA Na+/phosphate sym 32.2 1.9E+02 0.0042 31.4 8.0 29 49-77 445-473 (533)
452 PF03233 Cauli_AT: Aphid trans 32.2 3.4E+02 0.0073 24.1 8.1 18 97-114 138-155 (163)
453 KOG2150 CCR4-NOT transcription 32.2 3.7E+02 0.008 29.2 9.9 13 24-36 45-57 (575)
454 PF11414 Suppressor_APC: Adeno 32.0 2.5E+02 0.0054 21.9 6.8 46 21-82 1-49 (84)
455 PF04281 Tom22: Mitochondrial 32.0 1.7E+02 0.0038 25.2 6.3 25 361-385 60-84 (137)
456 PRK11469 hypothetical protein; 31.9 2.5E+02 0.0053 25.9 7.8 76 245-327 103-180 (188)
457 PF09738 DUF2051: Double stran 31.6 3.1E+02 0.0068 27.4 8.9 20 96-115 142-161 (302)
458 PTZ00332 paraflagellar rod pro 31.6 6.7E+02 0.014 26.8 12.0 21 112-135 391-411 (589)
459 PRK00430 fis global DNA-bindin 31.3 71 0.0015 25.6 3.7 32 101-132 62-93 (95)
460 PF08580 KAR9: Yeast cortical 31.2 2.8E+02 0.0061 31.5 9.6 47 49-95 223-269 (683)
461 PRK10884 SH3 domain-containing 31.2 3.7E+02 0.0081 25.2 8.9 33 51-83 94-126 (206)
462 TIGR01069 mutS2 MutS2 family p 31.1 3.8E+02 0.0082 31.1 10.8 15 119-133 593-607 (771)
463 KOG2601 Iron transporter [Inor 30.9 6.4E+02 0.014 26.3 13.1 74 512-586 26-99 (503)
464 PF07083 DUF1351: Protein of u 30.6 2.7E+02 0.0059 26.3 8.1 67 20-86 14-89 (215)
465 PF08566 Pam17: Mitochondrial 30.4 4E+02 0.0087 24.0 8.4 11 501-511 24-34 (173)
466 PF10046 BLOC1_2: Biogenesis o 30.4 2.9E+02 0.0063 22.3 7.3 22 63-84 30-51 (99)
467 PF03114 BAR: BAR domain; Int 30.4 3.2E+02 0.0069 25.6 9.0 24 11-34 118-141 (229)
468 cd07634 BAR_GAP10-like The Bin 30.2 4.7E+02 0.01 24.5 10.0 27 56-82 8-34 (207)
469 PHA03332 membrane glycoprotein 30.2 4.2E+02 0.009 31.2 10.3 41 49-89 922-962 (1328)
470 PF04420 CHD5: CHD5-like prote 29.8 1.6E+02 0.0035 26.3 6.2 23 18-40 37-59 (161)
471 TIGR02230 ATPase_gene1 F0F1-AT 29.8 2.2E+02 0.0047 23.1 6.1 22 374-395 45-66 (100)
472 cd07637 BAR_ACAP3 The Bin/Amph 29.7 4.7E+02 0.01 24.4 11.1 20 52-71 11-30 (200)
473 COG3162 Predicted membrane pro 29.4 3E+02 0.0065 22.1 8.2 56 502-557 13-68 (102)
474 KOG3097 Predicted membrane pro 29.3 42 0.00092 33.7 2.5 75 280-354 307-383 (390)
475 cd07602 BAR_RhoGAP_OPHN1-like 29.2 4.8E+02 0.011 24.4 11.1 24 112-135 97-120 (207)
476 PF04111 APG6: Autophagy prote 29.2 3.5E+02 0.0075 27.4 9.0 7 77-83 80-86 (314)
477 PF10398 DUF2443: Protein of u 28.9 2.2E+02 0.0047 21.3 5.3 15 48-62 48-62 (79)
478 PRK14163 heat shock protein Gr 28.9 4E+02 0.0087 25.1 8.6 79 53-135 43-127 (214)
479 PRK14139 heat shock protein Gr 28.9 4.6E+02 0.01 24.1 8.9 23 110-132 106-128 (185)
480 KOG4844 Mitochondrial ribosoma 28.9 18 0.00039 27.8 -0.1 28 7-34 38-65 (102)
481 COG1561 Uncharacterized stress 28.8 5.8E+02 0.013 25.2 11.3 25 104-132 215-239 (290)
482 PF08776 VASP_tetra: VASP tetr 28.7 1.7E+02 0.0037 19.0 4.2 9 22-30 4-12 (40)
483 COG5336 Uncharacterized protei 28.6 2.8E+02 0.006 22.7 6.3 29 367-395 37-66 (116)
484 PF10212 TTKRSYEDQ: Predicted 28.4 4.4E+02 0.0096 28.4 9.7 16 99-114 499-514 (518)
485 PF10374 EST1: Telomerase acti 28.3 1.1E+02 0.0023 26.1 4.7 98 16-119 10-126 (131)
486 COG1268 BioY Uncharacterized c 28.3 1.6E+02 0.0034 27.0 5.8 40 289-328 88-128 (184)
487 PRK02237 hypothetical protein; 28.3 1.1E+02 0.0023 25.1 4.1 48 549-597 56-103 (109)
488 COG2119 Predicted membrane pro 28.3 4.7E+02 0.01 23.9 8.5 75 245-321 97-172 (190)
489 PF05597 Phasin: Poly(hydroxya 28.1 1.7E+02 0.0037 25.1 5.6 78 5-91 55-132 (132)
490 PF07384 DUF1497: Protein of u 28.0 1.9E+02 0.0042 19.4 4.6 25 58-82 31-55 (59)
491 KOG2351 RNA polymerase II, fou 27.8 3.6E+02 0.0077 22.7 7.0 36 43-82 46-81 (134)
492 PF03249 TSA: Type specific an 27.7 2.2E+02 0.0047 28.8 6.9 29 101-134 342-370 (503)
493 PF15079 DUF4546: Domain of un 27.6 2.2E+02 0.0047 25.1 6.1 8 55-62 52-59 (205)
494 PF05478 Prominin: Prominin; 27.5 1.1E+03 0.023 27.8 17.3 283 24-344 165-487 (806)
495 PRK10869 recombination and rep 27.4 83 0.0018 34.8 4.7 47 13-64 156-202 (553)
496 PF12917 HD_2: HD containing h 27.4 3.8E+02 0.0081 25.2 8.0 32 101-132 140-174 (215)
497 PF07851 TMPIT: TMPIT-like pro 27.1 4.6E+02 0.01 26.6 9.2 64 42-115 4-75 (330)
498 cd07593 BAR_MUG137_fungi The B 27.0 3.5E+02 0.0077 25.5 8.1 29 54-82 146-174 (215)
499 COG3202 ATP/ADP translocase [E 26.9 8.4E+02 0.018 26.4 12.7 71 512-588 26-100 (509)
500 KOG1853 LIS1-interacting prote 26.7 5.7E+02 0.012 24.4 9.3 75 24-115 104-178 (333)
No 1
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-36 Score=281.07 Aligned_cols=172 Identities=37% Similarity=0.529 Sum_probs=145.0
Q ss_pred CCchhhhhhhccchhhhhccChhhHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 2 VAFGKKLKETQIQEWQGYYINYKLLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIVLFLLEQQGALASRLSDLG 81 (703)
Q Consensus 2 mkFg~~l~~~~~~ew~~~yi~Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~ 81 (703)
|||||+|+++..|||+++|||||.|||+||+.......+..+. ..+.+|++.||.|||||+.|+.+|++|+.+|++.|+
T Consensus 1 MkFGk~L~~~~l~ew~~~yinYk~LKK~lK~~~~~~~~~~~~~-~~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~ 79 (310)
T KOG1161|consen 1 MKFGKYLKEELLPEWKDKYINYKELKKLLKQYSIQTADSSPDS-RDESDFVRLLDAELEKVNGFQLEKESELIIRLKELE 79 (310)
T ss_pred CchhHHHHHhhhhhHhhhhcCHHHHHHHHHHhccccccCCccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999754333222221 157899999999999999999999999999999999
Q ss_pred HHHHHhc-cCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCchHHHHhhhcCCCccchhhhh
Q 005307 82 EHHDALS-QHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLRQVFK 160 (703)
Q Consensus 82 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK~~~~~~~~~~~~~~~~~~f~~~q~~~~ 160 (703)
++.+.-. ++++......+++++.+++.|+++|.+|++||+|||+||||||||+++...+..|.+++.++||...
T Consensus 80 e~~~~~~~~~~~~~~~~~lr~~l~~~~~em~~L~~fs~LN~tGf~KILKK~DKrtg~~l~~~f~~~l~~~Pf~~~----- 154 (310)
T KOG1161|consen 80 EKIDALSLEPPSAEEMKELREELVDFHGEMVLLENFSRLNYTGFAKILKKHDKRTGYRLRPYFQVRLLHQPFFTT----- 154 (310)
T ss_pred HHhhccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccccccccHHHHHHHhCCCchh-----
Confidence 9998622 2345667889999999999999999999999999999999999999999999999999999999764
Q ss_pred cccHhHHHHHHHHHHHHHhh
Q 005307 161 HVGIGAVVGAISRNLAELQD 180 (703)
Q Consensus 161 ~~~~~~~~~~i~~~~~~l~~ 180 (703)
+....+..+++..++.+..
T Consensus 155 -e~~~~Lv~e~~~l~~~l~~ 173 (310)
T KOG1161|consen 155 -EQLFRLVYEISILLDLLRP 173 (310)
T ss_pred -hhHHHHHHHHHHHHHHhcc
Confidence 4445566666655554443
No 2
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-33 Score=280.59 Aligned_cols=348 Identities=20% Similarity=0.214 Sum_probs=287.3
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 005307 244 RYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL 323 (703)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~ 323 (703)
+..|..++.+.++.|.......+..+.+|++.+|+|+|....|++.++|.++..+++|+...++||+.||++++..+.++
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lF 88 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALF 88 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 44577888889999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred -HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccc
Q 005307 324 -VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTN 398 (703)
Q Consensus 324 -~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g 398 (703)
+++++++++ +||+.++++|++.|+..|. ++..++.+++.|+++|++++++...+.+++.++|.++|.++ .+|
T Consensus 89 i~~n~l~alA---p~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G 165 (394)
T COG2814 89 IVSNLLSALA---PSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG 165 (394)
T ss_pred HHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence 999999999 9999999999999999988 99999999999999999999999999999999999999999 889
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcc
Q 005307 399 FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEND 478 (703)
Q Consensus 399 ~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (703)
| |.+|++.++++++.++..+..+| |+...+
T Consensus 166 W----------R~~F~~ia~l~ll~~~~~~~~lP--~~~~~~-------------------------------------- 195 (394)
T COG2814 166 W----------RATFLAIAVLALLALLLLWKLLP--PSEISG-------------------------------------- 195 (394)
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHhCC--CccCCC--------------------------------------
Confidence 8 99999999999999999999898 221111
Q ss_pred ccccCCCCCCCCcccccccCCCcccHHHHHH-hhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHh
Q 005307 479 DQELDNDDHDEDDEDSKITHRPVTSIMSAYR-LLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLAC 557 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 557 (703)
....+.++..+ +++|.++...+..++...+.+..++|+.+++++..|++...+++.+.+
T Consensus 196 --------------------~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~ 255 (394)
T COG2814 196 --------------------SLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLA 255 (394)
T ss_pred --------------------CCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHH
Confidence 00112222222 238999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccC
Q 005307 558 LGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSS 637 (703)
Q Consensus 558 ~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (703)
+|+++.+++.+.| ++.|| +.++.+.....+.++.++.+... ..+.+..++..++.+++............++..|+
T Consensus 256 ~Gv~~~~Gn~~gG-rl~dr-~~~~~l~~~~~l~a~~~l~l~~~--~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~ 331 (394)
T COG2814 256 FGIAGFIGNLLGG-RLADR-GPRRALIAALLLLALALLALTFT--GASPALALALLFLWGFAFSPALQGLQTRLARLAPD 331 (394)
T ss_pred HHHHHHHHHHHHh-hhccc-cchhHHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCC
Confidence 9999999999877 99999 88888887777777776554444 23444555555555655555444555555554445
Q ss_pred CCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 638 RLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 638 ~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
. ++.+.+.. ....++|..+|..+++ +.+..+
T Consensus 332 ~--~~~a~sl~--~aa~nlgia~GA~lGG~v~~~~g 363 (394)
T COG2814 332 A--ADLAGSLN--VAAFNLGIALGAALGGLVLDALG 363 (394)
T ss_pred c--hHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhc
Confidence 4 66666666 3377788888888777 555544
No 3
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=100.00 E-value=3.8e-34 Score=315.16 Aligned_cols=411 Identities=14% Similarity=0.067 Sum_probs=282.7
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH
Q 005307 243 QRYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL 322 (703)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~ 322 (703)
.+.+|..+.++.++.++..++...+.+++|.+..++|++..+.+++.+++.++.+++++++|+++||+|||+++++++++
T Consensus 162 ~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil 241 (742)
T TIGR01299 162 GRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSV 241 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 35567777777888888888888888999999999999999999999999999999999999999999999999998765
Q ss_pred H-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cc
Q 005307 323 L-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QT 397 (703)
Q Consensus 323 ~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~ 397 (703)
. ++.++++++ ++++.++++|++.|++.|. ++..++++|++|++.|++.++++.+++.+|.++++.++.++ .+
T Consensus 242 ~~i~~ll~afa---~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~ 318 (742)
T TIGR01299 242 NGFFAFFSSFV---QGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHY 318 (742)
T ss_pred HHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 888899999 9999999999999999877 89999999999999999999999999999999999998877 66
Q ss_pred ccccc---ccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCC---CCCcccccchh
Q 005307 398 NFKIY---KLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNG---STRPLLLNSEA 471 (703)
Q Consensus 398 g~~~~---~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 471 (703)
||... .....+||+.+++.++.+++.+ +.++++||+|++...+++.+++..-.+...+.+.. .+.+.+.....
T Consensus 319 G~~~~~g~~~~~~gWR~l~~i~~lp~ll~l-l~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~ 397 (742)
T TIGR01299 319 GWSFQMGSAYQFHSWRVFVIVCAFPCVFAI-GALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHI 397 (742)
T ss_pred cchhccccccccccHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHH
Confidence 76431 2345678999988877665544 55667899999876655555443222111111100 00000000000
Q ss_pred cccCCccc-cccCCCCCCCCccccc--cc-CCCcccHHHHHHhh----CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhh
Q 005307 472 KQKDENDD-QELDNDDHDEDDEDSK--IT-HRPVTSIMSAYRLL----TPSVKVQLFVYFMLKYAMEILLAESSVITEHY 543 (703)
Q Consensus 472 ~~~~~~~~-~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (703)
+......+ .+.+.+. ....... .. ......+..++.++ .++.+.++++.++..++++++..++|.++...
T Consensus 398 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~ 475 (742)
T TIGR01299 398 KTIHQEDELIEIESDT--GTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHL 475 (742)
T ss_pred HHhhhhhhhhcccccc--cchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0000000 0000000 00 00000111233333 33456677777888888899999999764331
Q ss_pred ----c-------------------------------------cc-----c------------------------------
Q 005307 544 ----F-------------------------------------IW-----S------------------------------ 547 (703)
Q Consensus 544 ----~-------------------------------------g~-----s------------------------------ 547 (703)
+ |+ +
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 555 (742)
T TIGR01299 476 QADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTL 555 (742)
T ss_pred HHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhh
Confidence 0 00 0
Q ss_pred --------------------------------------chhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHH
Q 005307 548 --------------------------------------TSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEII 589 (703)
Q Consensus 548 --------------------------------------~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~ 589 (703)
.....+...+.+++.+++.++.+ +++||+|||+++++++++
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g-~L~Dr~GRr~~l~~~~~l 634 (742)
T TIGR01299 556 FENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSA-LLMDKIGRLRMLAGSMVL 634 (742)
T ss_pred ccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHH
Confidence 00112334555677777877777 999999999999988888
Q ss_pred HHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 590 VCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 590 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
.+++++++... .+...+++..++++++.+...+...+++++.+|++ .||+++|+. ...+.+|.++||++++
T Consensus 635 sai~~ll~~~~---~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~-~Rgta~Gi~--~~~~rlGaiigp~i~g 705 (742)
T TIGR01299 635 SCISCFFLSFG---NSESAMIALLCLFGGLSIAAWNALDVLTVELYPSD-KRATAFGFL--NALCKAAAVLGILIFG 705 (742)
T ss_pred HHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH-HHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 88876544333 22334444455666666677788889999999999 899999998 4488899999999655
No 4
>PRK03545 putative arabinose transporter; Provisional
Probab=100.00 E-value=1.5e-31 Score=282.79 Aligned_cols=346 Identities=14% Similarity=0.099 Sum_probs=265.0
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-
Q 005307 245 YHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL- 323 (703)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~- 323 (703)
.+|..++.+.++.++.........+.+|.+.+++|.|+.+.|++.+++.++..++++++|+++||+|||+++..+.+..
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 85 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFI 85 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3565666666666666566666777899999999999999999999999999999999999999999999999997765
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccc
Q 005307 324 VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNF 399 (703)
Q Consensus 324 ~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~ 399 (703)
+++++++++ +|++.++++|+++|++.+. +...+++.|++|+++|++++|++..+.++|.++||++++.+ ..||
T Consensus 86 ~~~~~~~~~---~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw 162 (390)
T PRK03545 86 ASHVLSALA---WNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGW 162 (390)
T ss_pred HHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcH
Confidence 899999999 9999999999999999887 78889999999999999999999999999999999999988 6788
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccc
Q 005307 400 KIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDD 479 (703)
Q Consensus 400 ~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (703)
|++|++.++++++..+..+..+|++++++..
T Consensus 163 ----------~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~--------------------------------------- 193 (390)
T PRK03545 163 ----------RTTFLAIGGGALITLLLLIKLLPLLPSEHSG--------------------------------------- 193 (390)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhCCCCCCCCcc---------------------------------------
Confidence 9999999988877766666656654321000
Q ss_pred cccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhh
Q 005307 480 QELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLG 559 (703)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 559 (703)
.....++.++ ++.++......++..........+.++++.+.+|++..+++...++.+
T Consensus 194 --------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~ 251 (390)
T PRK03545 194 --------------------SLKSLPLLFR--RPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFG 251 (390)
T ss_pred --------------------hHHHHHHHHh--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 0012223333 666666555555555555555667788888888999999999999888
Q ss_pred hhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCC
Q 005307 560 LTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRL 639 (703)
Q Consensus 560 ~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (703)
++++++..+.+ ++.||++++.. ..+..+..++..+.... ..+.+..++..++.|++.....+...+.+.+..|+
T Consensus 252 ~~~~~g~~~~g-~l~dr~~~~~~-~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-- 325 (390)
T PRK03545 252 GAGIIGSVLFS-RLGNRHPSGFL-LIAIALLLVCLLLLLPA--ANSEWHLSVLSIFWGIAIMCIGLAMQVKVLKLAPD-- 325 (390)
T ss_pred HHHHHHHHHHH-HHhhccchhHH-HHHHHHHHHHHHHHHHH--hchHHHHHHHHHHHHHHHhcchHHHHHHHHHhCCC--
Confidence 99999988877 99999998765 44444444443332222 23445555666676777666666677777777765
Q ss_pred cccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 640 SRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 640 ~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
.+|+++|..+ ....+|..+||++++ +++..+
T Consensus 326 ~~~~~~g~~~--~~~~~g~~~G~~~~G~~~~~~g 357 (390)
T PRK03545 326 ATDVAMALFS--GIFNIGIGAGALLGNQVSLHLG 357 (390)
T ss_pred cHHHHHHHHH--HHHHHHHHHHHHHHHHHHhccC
Confidence 4788888873 367789999999666 455544
No 5
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=100.00 E-value=1.3e-30 Score=274.70 Aligned_cols=347 Identities=14% Similarity=0.162 Sum_probs=257.7
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 005307 244 RYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL 323 (703)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~ 323 (703)
+..|+.+..+.++.++.........+.+|.+.+++|.++.+.|+..+++.++..+++++.|+++||+|||++++.+.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~ 95 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLL 95 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHH
Confidence 34676666666666655555556667889999999999999999999999999999999999999999999999997755
Q ss_pred -HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccc
Q 005307 324 -VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTN 398 (703)
Q Consensus 324 -~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g 398 (703)
++.++++++ ++++.++++|+++|++.|. +...+++.|++|+++|++++++...+.++|.++||++++++ .+|
T Consensus 96 ~~~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g 172 (394)
T PRK10213 96 TLSCLLVSFA---NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG 172 (394)
T ss_pred HHHHHHHHHH---ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 888999999 9999999999999999887 88999999999999999999999999999999999999999 678
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcc
Q 005307 399 FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEND 478 (703)
Q Consensus 399 ~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (703)
| |+.|++.++++++..+......||++.+...
T Consensus 173 w----------~~~f~~~~~l~~~~~l~~~~~~p~~~~~~~~-------------------------------------- 204 (394)
T PRK10213 173 W----------RNVFNAAAVMGVLCIFWIIKSLPSLPGEPSH-------------------------------------- 204 (394)
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHHCCCCCccccc--------------------------------------
Confidence 8 9999998877766555544445654321000
Q ss_pred ccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhh
Q 005307 479 DQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACL 558 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~ 558 (703)
.........+ +|.++...+..++.........+++++++.+.+|+++...+..+...
T Consensus 205 ---------------------~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~ 261 (394)
T PRK10213 205 ---------------------QKQNTFRLLQ--RPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSF 261 (394)
T ss_pred ---------------------chhHHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 0001222222 66777665555555555555556665545566799999999999998
Q ss_pred hhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCC
Q 005307 559 GLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSR 638 (703)
Q Consensus 559 ~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (703)
++++.++..+.+ ++.||.+++.....+....++++++.... .+.+...+..++.|++.+...+...+++++..|++
T Consensus 262 ~~~~iig~~~~~-~l~~r~~~~~l~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~ 337 (394)
T PRK10213 262 GIASFVGTSLSS-FILKRSVKLALAGAPLVLAVSALVLTLWG---SDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ 337 (394)
T ss_pred HHHHHHHHHHHH-HHHhccchhHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHCccc
Confidence 998889887777 99999654433333333233332222222 33455556677778888888888888899888854
Q ss_pred CcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 639 LSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 639 ~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
++...+.. .....+|..+||.+++ +++..+
T Consensus 338 --~~~~~~~~--~~~~~lg~~~G~~l~G~l~~~~g 368 (394)
T PRK10213 338 --AEKAGSIQ--VAVIQLANTCGAAIGGYALDNIG 368 (394)
T ss_pred --HHHHHHHH--HHHHHHHHHHHHHHHHHHHhccC
Confidence 55555554 3366789999999666 444443
No 6
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-31 Score=258.76 Aligned_cols=396 Identities=11% Similarity=0.091 Sum_probs=299.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH
Q 005307 243 QRYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL 322 (703)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~ 322 (703)
+++++..+..++++.....+..-....+.|.+.++.++|.+++|++.+++.+++.++-.+.|.++||.+.|..+.++++.
T Consensus 24 ~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLil 103 (448)
T COG2271 24 KRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLIL 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHH
Confidence 35566777778888888888888888999999999999999999999999999999999999999999999999999886
Q ss_pred H-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhh--hhh--
Q 005307 323 L-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALA--CLF-- 395 (703)
Q Consensus 323 ~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~--~~l-- 395 (703)
. +.+++++++ ++++.+.+..+++|+..|. |.+...++.|+|+++||+..++++.+-++|..+.|++. +++
T Consensus 104 sai~nil~Gfs---~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~ 180 (448)
T COG2271 104 SAIVNILFGFS---PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF 180 (448)
T ss_pred HHHHHHHHhhh---hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence 6 999999999 9999999999999999887 99999999999999999999999999999999999988 777
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccC
Q 005307 396 QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKD 475 (703)
Q Consensus 396 ~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (703)
+.+| |..|++.++++++..++.++..+++|....-.. ... ...
T Consensus 181 ~~~w----------~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~-----------------------ie~----~~~ 223 (448)
T COG2271 181 HGGW----------RAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP-----------------------IEE----YRG 223 (448)
T ss_pred ccch----------hHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC-----------------------HHH----hhc
Confidence 5576 999999999999999999999999987433100 000 000
Q ss_pred CccccccCCCCCCCCcccccccCCCcccHHHHHHh--hCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHH
Q 005307 476 ENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRL--LTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAI 553 (703)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 553 (703)
+..+ .. +++++......+..+.+. .||.+|.+.+.+++.+..=+++..+.|+|+.+..|++...++.
T Consensus 224 d~~e----------~~-~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~ 292 (448)
T COG2271 224 DPLE----------IY-EEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANW 292 (448)
T ss_pred Cchh----------hh-hhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHH
Confidence 0000 00 000111112223333333 2999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhHHHHHHhhhhhhh--hhHHHHH-HHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHH--HH
Q 005307 554 FLACLGLTVLPVNIIVGNYISNIF--EERQVLL-ASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGV--NL 628 (703)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~l~~r~--g~r~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 628 (703)
.++.+=.+++++.+++| |++||+ |||.... +.+++..++++..+... ..+.+...+..++ +|+....|. .-
T Consensus 293 a~~lfE~agl~G~Ll~G-wlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~-~~~~~l~~~~l~~--iGf~IyGPqmLiG 368 (448)
T COG2271 293 AISLFEVAGLPGTLLAG-WLSDKLFKGRRGPMALIFMLLITASLVLYWLAP-NGSYLLDAILLFI--IGFLIYGPQMLIG 368 (448)
T ss_pred HHHHHHHHhhHHHHHHH-HHHHHhcccccchHHHHHHHHHHHHHHHHHcCC-CccHHHHHHHHHH--HHHHHhhHHHHHH
Confidence 99999999999999988 999996 5555443 33444444433333331 2334444444444 444444443 33
Q ss_pred HHHHhhccCCCcccccchhhhHHhhhhh-hhhhccceee-eeccccCCcccccchhHHHHHHHHHHHHHHHhhc
Q 005307 629 SLLSRVMSSRLSRGTYNGGLLSTEAGTL-ARVIADGTIT-LSGYLGESRLLNVTLLPSLFICISSIVATCITYN 700 (703)
Q Consensus 629 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~-g~~~gp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (703)
....|..|++ ..|++.|.. ..++.+ |.+.+....+ +.+. ..+...+..+.++++++.+..+.+++
T Consensus 369 l~a~e~~pK~-AaGtA~Gf~--Glf~Yl~Ga~~a~~~~g~i~d~----~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 369 LAAAEFVPKK-AAGTATGFV--GLFAYLIGAALAGLPLGYIADT----WGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred HHHhccccHh-hccchhchh--hhHHHHhhHHhcCCcceeeEec----CCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 5667888888 899999987 335556 7777777555 3343 33455666777777776666665544
No 7
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=100.00 E-value=3.8e-31 Score=287.37 Aligned_cols=395 Identities=12% Similarity=-0.009 Sum_probs=285.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-V 324 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~ 324 (703)
+|..+..++++.++..++..++...+|.+.+++|.+..+.+|+.+++.++..++.+++|+++||+|||++++++.+.+ +
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~ 83 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGL 83 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 466788899999999999999999999999999999999999999999999999999999999999999999997765 9
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccC-ChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccc
Q 005307 325 GNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCV-PLKLRMRASAGFVSASALGMACGPALACLF--QTNF 399 (703)
Q Consensus 325 ~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~-~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~ 399 (703)
++++++++ +|++.++++|+++|+|.+. +.....+.+.+ |+++|++++|++.....+|.++||.+++++ ..||
T Consensus 84 ~~~~~~~a---~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gw 160 (495)
T PRK14995 84 ASLAAAFS---PTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYW 160 (495)
T ss_pred HHHHHHHc---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Confidence 99999999 9999999999999999887 66777776665 789999999999999999999999999999 6788
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccc---c-ccccccCCCCCCcccccchhcccC
Q 005307 400 KIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAG---L-LINCTVDNGSTRPLLLNSEAKQKD 475 (703)
Q Consensus 400 ~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~ 475 (703)
||+|++...++++.+++.++++|+++....++......... . .............+.... ...
T Consensus 161 ----------r~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~ 227 (495)
T PRK14995 161 ----------GSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWV---TSL 227 (495)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHH---HHH
Confidence 99999999888888777777788765321110000000000 0 000000000000000000 000
Q ss_pred CccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHH
Q 005307 476 ENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFL 555 (703)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 555 (703)
.-.-.. . ........+.+...+..+...++++.+....+..++...+......++|.|++..+|+++.++|+.+
T Consensus 228 ~~~~~~----~--~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~ 301 (495)
T PRK14995 228 TLLTGA----L--LLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFM 301 (495)
T ss_pred HHHHHH----H--HHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 000000 0 0000000000111222222222377777777777777777777778899999999999999999999
Q ss_pred HhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 005307 556 ACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVM 635 (703)
Q Consensus 556 ~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (703)
...+++..++..+.| ++.||+|+|+.+..+.++.+++++++.......+.+......++.|++.+...+.......+.+
T Consensus 302 ~~~~~~~~~~~~~~g-~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~ 380 (495)
T PRK14995 302 LPVMVASGFSGPIAG-ILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAA 380 (495)
T ss_pred HHHHHHHHHHHHHHH-HHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 999999999988878 9999999999888888777776543322221234444556677778888888888888888889
Q ss_pred cCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 636 SSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 636 ~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
|++ ++|.+.+.. +....+|..+|+.+.+
T Consensus 381 ~~~-~~g~~~~~~--~~~~~lG~~~G~ai~g 408 (495)
T PRK14995 381 PPE-KAAAAGAIE--TMAYELGAGLGIAIFG 408 (495)
T ss_pred CHH-hcchHHHHH--HHHHHHHHHHHHHHHH
Confidence 988 888877777 4477788888887666
No 8
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=100.00 E-value=4.2e-31 Score=280.24 Aligned_cols=380 Identities=14% Similarity=0.122 Sum_probs=268.8
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 005307 244 RYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL 323 (703)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~ 323 (703)
+.+|+.+.++++..++..++........|.+.+++|.+..+.|++.+++.++..+++++.|+++||+|||+++..++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~ 83 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLW 83 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHH
Confidence 45678888888888899999999999999999999999999999999999999999999999999999999999987766
Q ss_pred -HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-c---
Q 005307 324 -VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-Q--- 396 (703)
Q Consensus 324 -~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~--- 396 (703)
+++++++++ ++++.++++|++.|++.|. +....++.|++|+++|++++++++.+..+|.++||++++++ .
T Consensus 84 ~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 160 (412)
T TIGR02332 84 GIASTATMFA---TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDG 160 (412)
T ss_pred HHHHHHHHHh---cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999 9999999999999999887 77888999999999999999999999999999999999887 3
Q ss_pred ----ccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhc
Q 005307 397 ----TNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAK 472 (703)
Q Consensus 397 ----~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (703)
.|| |+.|++.++++++..++.++++||+|+....-. .++.....+..+.
T Consensus 161 ~~~~~gw----------r~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~-~~~~~~~~~~~~~---------------- 213 (412)
T TIGR02332 161 LMALKGW----------QWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLD-EEDKKALKEMIDN---------------- 213 (412)
T ss_pred CCCccch----------hHHHHHHHHHHHHHHHHHhhccCCCcccCCCCC-HHHHHHHHHHHHh----------------
Confidence 366 999999988887777777777899885321000 0000000000000
Q ss_pred ccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhh-ccccchhH
Q 005307 473 QKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHY-FIWSTSRV 551 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~ 551 (703)
+....+ + .+. ................+++.++...+..++.....+.+.+++|.++.+. .|.+..++
T Consensus 214 -~~~~~~------~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~ 281 (412)
T TIGR02332 214 -DQLTLE------Q---PEG--AFAHAAMPQRSMLREIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMI 281 (412)
T ss_pred -cccccc------c---ccc--ccccccccHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHh
Confidence 000000 0 000 0000000011112223366777777777777778888889999999773 46788888
Q ss_pred HHHHHhhhhhhhhHHHHHHhhhhhhhhhHHH-HHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHH
Q 005307 552 AIFLACLGLTVLPVNIIVGNYISNIFEERQV-LLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSL 630 (703)
Q Consensus 552 g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (703)
+.......++..++..+.+ +++||+++|+. .....++..+++++.... ... ........+.+++.....+.....
T Consensus 282 ~~~~~~~~l~~~~g~l~~g-~l~dr~~~r~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~g~~~~~~~~~~~ 357 (412)
T TIGR02332 282 GLLAAIPQFCTIFGMIWWS-RHSDRLKERKHHTALPYLFAAAGWLLASAT--DHN-LIQLLGIIMASMGSFSAMAIFWTT 357 (412)
T ss_pred HHHhhHHHHHHHHHHHHHH-HHhcccCccHHHHHHHHHHHHHHHHHHHhc--CCH-HHHHHHHHHHHHHhhhhhhHHHhh
Confidence 9888888899888888877 99999997764 333444444443322222 111 211222222233332223333344
Q ss_pred HHhhccCCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 631 LSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 631 ~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
..+..|++ .+|++.|..+. .+.+|.+++|.+.+ +.+..+
T Consensus 358 ~~~~~~~~-~~~~a~g~~~~--~~~~g~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 358 PDQSISLQ-ARAIAIAVINA--TGNIGSALSPFLIGILKDATG 397 (412)
T ss_pred cccccchH-HHHHHHHHHHH--hhhhhhhhhhhhcccccccCC
Confidence 45667777 89999999844 78899999999766 444443
No 9
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=100.00 E-value=2.3e-30 Score=275.81 Aligned_cols=350 Identities=14% Similarity=0.076 Sum_probs=271.7
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH
Q 005307 243 QRYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL 322 (703)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~ 322 (703)
.+++|..+.+.++..++..++.....+..|.+.+++|.++.+.|++.+++.++..++++++|+++||+|||+++..+.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 89 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVAL 89 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 45788888888899999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred H-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cc
Q 005307 323 L-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QT 397 (703)
Q Consensus 323 ~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~ 397 (703)
. ++.++++++ ++++.+++.|++.|++.+. +...+++.|++|+++|++++++...+..+|..++|.+++.+ ..
T Consensus 90 ~~~~~~~~~~~---~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 166 (406)
T PRK11551 90 FGLFSLATAQA---WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDA 166 (406)
T ss_pred HHHHHHHHHHh---ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 5 888888888 9999999999999999877 88899999999999999999999999999999999998877 56
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCc
Q 005307 398 NFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEN 477 (703)
Q Consensus 398 g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (703)
+| +++|++.+++.++..++..+++||+++....+.+
T Consensus 167 ~~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------------------------------- 202 (406)
T PRK11551 167 AW----------RHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGA---------------------------------- 202 (406)
T ss_pred CH----------HHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCc----------------------------------
Confidence 77 8999988877776666666678887653221000
Q ss_pred cccccCCCCCCCCcccccccCCCcccHHHHHHhh-CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHH
Q 005307 478 DDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLL-TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLA 556 (703)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 556 (703)
. .......+..++.. .+..+......++..........+.|.++.+ .|+++.+.+...+
T Consensus 203 ------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~ 262 (406)
T PRK11551 203 ------------G-------KQRAPVLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVG-QGLSRSQAGLVQI 262 (406)
T ss_pred ------------c-------hhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCChhhhhHHHH
Confidence 0 00000111111110 1223333333444444555566677888776 6999999999999
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhcc
Q 005307 557 CLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMS 636 (703)
Q Consensus 557 ~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (703)
..+++.+++..+.+ ++.||+|+++.+..+.+..++++++.... .+.+.+.+..++.+++.+...+...++.++.+|
T Consensus 263 ~~~~~~~~~~~~~g-~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p 338 (406)
T PRK11551 263 AFNIGGALGSLLIG-ALMDRLRPRRVVLLIYAGILASLAALAAA---PSFAGMLLAGFAAGLFVVGGQSVLYALAPLFYP 338 (406)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 99999999988878 99999999998877666665554433322 233444455566666666677888899999999
Q ss_pred CCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 637 SRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 637 ~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
++ .+|+..|..+ ....+|.++||.+++
T Consensus 339 ~~-~~g~~~g~~~--~~~~~g~~~g~~~~g 365 (406)
T PRK11551 339 TQ-VRGTGVGAAV--AVGRLGSMAGPLLAG 365 (406)
T ss_pred hh-hhhhhhhHHH--HhhhHHHHHHhhhHh
Confidence 98 8999999984 477899999999666
No 10
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.98 E-value=1.1e-29 Score=271.84 Aligned_cols=366 Identities=11% Similarity=0.047 Sum_probs=256.0
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-
Q 005307 245 YHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL- 323 (703)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~- 323 (703)
+++......+++.++..++.....+.+|.+.+++|.|+.+.|++.+++.++..+++++.|+++||+|||+++.++.+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~ 99 (434)
T PRK11663 20 WRRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHH
Confidence 3445555666777777777777788899999999999999999999999999999999999999999999999987755
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccc
Q 005307 324 VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNF 399 (703)
Q Consensus 324 ~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~ 399 (703)
+++++++++ ++++.+++.|++.|++.|. +...+++.+++|+++|++++++++.+.++|.++||++++++ .+||
T Consensus 100 ~~~~~~~~~---~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw 176 (434)
T PRK11663 100 IINILFGFS---SSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGW 176 (434)
T ss_pred HHHHHHHHH---hHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 888899999 9999999999999998776 88889999999999999999999999999999999999988 6787
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccc
Q 005307 400 KIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDD 479 (703)
Q Consensus 400 ~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (703)
|++|++.+++.++..++..+.+||+|.........+ .+++..+
T Consensus 177 ----------~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~---------------------------~~~~~~~ 219 (434)
T PRK11663 177 ----------RYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGE---------------------------WRHDALE 219 (434)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccc---------------------------ccccccc
Confidence 999999888777666555666787764321100000 0000000
Q ss_pred cccCCCCCCCCcccccccCCCcccHHHHH---HhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHH
Q 005307 480 QELDNDDHDEDDEDSKITHRPVTSIMSAY---RLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLA 556 (703)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 556 (703)
... .......++++.. ...++.++.+.+..++..+....+.+++|.|+.+.+|++..+++...+
T Consensus 220 ----------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~ 286 (434)
T PRK11663 220 ----------LAQ---QQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVS 286 (434)
T ss_pred ----------cch---hccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 000 0000011122221 112667777777666666777777788999998888999999999999
Q ss_pred hhhhhhhhHHHHHHhhhhhhh--hhHHHH-HH---HHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHH
Q 005307 557 CLGLTVLPVNIIVGNYISNIF--EERQVL-LA---SEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSL 630 (703)
Q Consensus 557 ~~~~~~~~~~~~~~~~l~~r~--g~r~~~-~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (703)
+.++++.++.++.+ ++.||+ ++|+.. .. +..+..++ ++.... .+.....+..+..+++...........
T Consensus 287 ~~~~~~~~g~~~~g-~l~dr~~~~~r~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~ 361 (434)
T PRK11663 287 MFELGGFIGALVAG-WGSDKLFNGNRGPMNLIFAAGILLSVGS-LWLMPF---ASYVMQAACFFTIGFFVFGPQMLIGMA 361 (434)
T ss_pred HHHHHHHHHHHHHh-hhHHHhccCCccHHHHHHHHHHHHHHHH-HHHccc---ccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 98999999998888 999998 333222 21 11212222 111221 122222222222222211112233455
Q ss_pred HHhhccCCCcccccchhhhHHhhhhhhhhhccceee-eeccc
Q 005307 631 LSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYL 671 (703)
Q Consensus 631 ~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~ 671 (703)
..+..|++ .+|++.|+.+ ....+|.+++|.+.+ +.+..
T Consensus 362 ~~~~~~~~-~~g~~~g~~~--~~~~~g~~~~p~~~g~l~~~~ 400 (434)
T PRK11663 362 AAECSHKE-AAGAATGFVG--LFAYLGAALSGYPLAKVLEIW 400 (434)
T ss_pred HHhcccHh-hHHhHHHHHH--HHHHHHHHHhcccHHHHHHhc
Confidence 67778777 8999999984 488899999999666 44433
No 11
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.97 E-value=3.3e-30 Score=278.53 Aligned_cols=367 Identities=13% Similarity=0.036 Sum_probs=256.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-V 324 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~ 324 (703)
.+..+.+++++.++..++.....+..|.+.+++|.+..+.|++.+++.+++.++++++|+++||+|||+++..+++.. +
T Consensus 27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~ 106 (467)
T PRK09556 27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAI 106 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHH
Confidence 344556666677777778888889999999999999999999999999999999999999999999999987775433 4
Q ss_pred HHHH-----HHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-c
Q 005307 325 GNTL-----YAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-Q 396 (703)
Q Consensus 325 ~~~~-----~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~ 396 (703)
+.++ ++++ ++++.++++|++.|++.|. +...++++|++|+++||+++|++..+.++|.++|++++.++ .
T Consensus 107 ~~~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~ 183 (467)
T PRK09556 107 CMLGFGASLGSGS---VSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGAN 183 (467)
T ss_pred HHHHHHHHHhccc---chHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHH
Confidence 4333 3346 8999999999999999776 88889999999999999999999999999999999988766 2
Q ss_pred -c---cccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhc
Q 005307 397 -T---NFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAK 472 (703)
Q Consensus 397 -~---g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (703)
+ +| +..|.+.+++.++..++.+++.+++|........ ++. .
T Consensus 184 ~~~~~~~----------~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~-~~~---------~--------------- 228 (467)
T PRK09556 184 YFFDGHV----------IGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKA-EEI---------F--------------- 228 (467)
T ss_pred hhccCcc----------hhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCCh-hhc---------c---------------
Confidence 2 34 8888888877777666666666766543211000 000 0
Q ss_pred ccCCccccccCCCCCCCCcccccccCCCcccHHH-HH--HhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccch
Q 005307 473 QKDENDDQELDNDDHDEDDEDSKITHRPVTSIMS-AY--RLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTS 549 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 549 (703)
.+... .++ +..+.. ..+..+ .. .++++.++...+..++......+...+.|.|+.+.+|+++.
T Consensus 229 --~~~~~----------~~~-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~ 294 (467)
T PRK09556 229 --GEPIS----------EED-KETEST-DMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKE 294 (467)
T ss_pred --cCccc----------hhh-hccccc-cCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHH
Confidence 00000 000 000000 001111 11 12378888888888888888778888999999998999999
Q ss_pred hHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHH
Q 005307 550 RVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLS 629 (703)
Q Consensus 550 ~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (703)
+++....+..++..++..+.| +++||+++|+.+..+..+..++..+..... ..+.+...+..++.|++..........
T Consensus 295 ~a~~~~~~~~~~~~ig~~~~G-~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~G~~~~~~~~~~~~ 372 (467)
T PRK09556 295 DAINTFTLFEIGALVGSLLWG-WLSDLANGRRALVACIALALIIFTLGVYQH-ATSEYMYLASLFALGFLVFGPQLLIGV 372 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCchHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999988888888888888877 999999998876655443333322111111 123333333444444332222222335
Q ss_pred HHHhhccCCCcccccchhhhHHhhhhh-hhhhccceee-eec
Q 005307 630 LLSRVMSSRLSRGTYNGGLLSTEAGTL-ARVIADGTIT-LSG 669 (703)
Q Consensus 630 ~~~~~~~~~~~~g~~~g~~~~~~~~~~-g~~~gp~~~~-~~~ 669 (703)
...+..|++ .+|++.|+.+. .+.+ |.+++|.+.+ +.+
T Consensus 373 ~~~~~~p~~-~~g~a~gi~~~--~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 373 AAVGFVPKK-AIGVANGIKGT--FAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred HHHhhcchh-hHHHHHHHHHH--HHHHHhHHHHhhhHHHHhc
Confidence 667899998 89999999844 6665 6688888666 444
No 12
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.97 E-value=1.7e-29 Score=261.97 Aligned_cols=327 Identities=10% Similarity=-0.019 Sum_probs=242.2
Q ss_pred HHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchh
Q 005307 260 YMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSI 338 (703)
Q Consensus 260 ~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~ 338 (703)
+......+.|.+|.+.+++|.|+.+.|++.+++.+++.+++++.|+++||+|||++++.+++.. .+.+....+ +++
T Consensus 3 ~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~---~~~ 79 (368)
T TIGR00903 3 SQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDP---FNY 79 (368)
T ss_pred hhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHh---ccH
Confidence 4456677889999999999999999999999999999999999999999999999877666555 443334445 689
Q ss_pred HHHHHHHHHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHH
Q 005307 339 AVLLIGRLFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWV 415 (703)
Q Consensus 339 ~~l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i 415 (703)
+.++++|+++|++.+. ......++|++|+++|++++++...+..+|.+++|++++++ .+|| |+.|++
T Consensus 80 ~~l~~~R~l~G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gW----------r~~f~~ 149 (368)
T TIGR00903 80 EWLLACQLLAALGQPFLLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGL----------QLLIIP 149 (368)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch----------HHHHHH
Confidence 9999999999999887 66667779999999999999999999999999999999999 7788 999999
Q ss_pred HHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCccccc
Q 005307 416 MALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSK 495 (703)
Q Consensus 416 ~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (703)
.++++++..++.++.+||+|+...+. .+
T Consensus 150 ~~~l~~~~~~~~~~~lp~~p~~~~~~------------------------------------------------~~---- 177 (368)
T TIGR00903 150 IAAVAAAGIILVLAALPALPFQAAEG------------------------------------------------FG---- 177 (368)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCC------------------------------------------------cc----
Confidence 88888888877788899987532110 00
Q ss_pred ccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhh
Q 005307 496 ITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISN 575 (703)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~ 575 (703)
. .+...+++++++ +|.++.+.+..++.....+.+.++.|.|+.+ .|++.. .+....+..+++.++.. ++.|
T Consensus 178 ~-~~~~~~~~~ll~--~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~-~g~s~~-~~~~~~l~~~~g~~g~~----~~~d 248 (368)
T TIGR00903 178 F-KDAVKEFGALAG--RKDLWIIGAILGFGVALFDNLAIWLEAALRP-AGLEDI-AGDAVALAILAGLIGVA----VIPD 248 (368)
T ss_pred h-HHHHHHHHHHHc--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCChH-HHHHHHHHHHHHHHHHH----HhhH
Confidence 0 000012444444 8888999889999999999999999999965 577754 56666665665655543 4555
Q ss_pred hhhh---HHHHHH-HHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHH
Q 005307 576 IFEE---RQVLLA-SEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLST 651 (703)
Q Consensus 576 r~g~---r~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 651 (703)
|..| |+.... ...+.++++...... .+....++...+.+++.....+..+++.++.+|++ .||++.|..+.
T Consensus 249 ~~~r~~~r~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~-~rgt~~G~~~~- 323 (368)
T TIGR00903 249 RVARAGLRSIYIRAAALLIAAFFLALAFE---LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKE-LHGKAAGAIGF- 323 (368)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHc---cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchh-hcCcccchhhH-
Confidence 5543 333232 333333332222111 12222333444445555566667788999999999 99999999844
Q ss_pred hhhhhhhhhccceee
Q 005307 652 EAGTLARVIADGTIT 666 (703)
Q Consensus 652 ~~~~~g~~~gp~~~~ 666 (703)
.+.+|++++|.+.+
T Consensus 324 -~g~~~~~~~~~~~~ 337 (368)
T TIGR00903 324 -TSRAISVALALAAM 337 (368)
T ss_pred -HHHHHHHHHHHHHH
Confidence 88899988888554
No 13
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=99.97 E-value=1.1e-31 Score=269.30 Aligned_cols=147 Identities=33% Similarity=0.547 Sum_probs=125.3
Q ss_pred CCchhhhhhhccchhhhhccChhhHHHHHHhhhhhhhcc-----------------------------------------
Q 005307 2 VAFGKKLKETQIQEWQGYYINYKLLKKKVNRYTQQIQVG----------------------------------------- 40 (703)
Q Consensus 2 mkFg~~l~~~~~~ew~~~yi~Y~~lK~~i~~~~~~~~~~----------------------------------------- 40 (703)
|||||+|+.+++|||+++|||||.|||+||+++......
T Consensus 1 MKFgk~L~~~~vpEW~~~YidYk~LKk~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (275)
T PF03105_consen 1 MKFGKQLQENAVPEWRDKYIDYKQLKKLIKRIQNEKESLGLSAETLSSISISSSSSSSSRSSSNSFESTSPSSSNTSPSS 80 (275)
T ss_pred CCchHHHHHhcCHHHHHHhCCHHHHHHHHHHHHhhhhcccccccccchhhhhhhhhcccccccccccccccccccccccc
Confidence 999999999999999999999999999999997654321
Q ss_pred -----chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-----------------------
Q 005307 41 -----AENRLNVLKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQD----------------------- 92 (703)
Q Consensus 41 -----~~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 92 (703)
..+....+.+|+..|+.|++|||.||.+++.|+.++++.|++++..+.++..
T Consensus 81 ~~~~~~~~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
T PF03105_consen 81 SNSEQNEDNEESEEEFFELLDEELEKVNDFYKEKEKELRERLEELQKQLEELREQRSKSSDKYNWNQSSQLSSSSNIFSS 160 (275)
T ss_pred cccchhhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchhhccccccccC
Confidence 0111134688999999999999999999999999999999999887532100
Q ss_pred -----------------------------------------------------------chhHHHHHHHHHHHHHHHHHH
Q 005307 93 -----------------------------------------------------------GSRISELQEAYRAVGHDLLRL 113 (703)
Q Consensus 93 -----------------------------------------------------------~~~~~~~~~~~~~~~~~l~~l 113 (703)
......|++++.++|.+|.+|
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~y~~l~~L 240 (275)
T PF03105_consen 161 SSSASAGSSNSSSASRRSQRFSSESSKQSSNSESDAESDNNRGDRSSDKPFLSSSQKSLKKARKQLKKAFIELYRELELL 240 (275)
T ss_pred ccccccCCccccccccccccchhhhhhccCCCCcccccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 012456889999999999999
Q ss_pred HhHHHHHHHHHHHHHhhhhcccCCCCchHHHHhhh
Q 005307 114 LFFVEMNATGLRKILKKFDKRFGYRFTDYYVKTRA 148 (703)
Q Consensus 114 ~~~~~ln~~~~~KilKK~dK~~~~~~~~~~~~~~~ 148 (703)
++|++||+|||+||||||||+++.+.++.|+..++
T Consensus 241 k~f~~LN~taf~KIlKK~DK~~~~~~~~~y~~~v~ 275 (275)
T PF03105_consen 241 KSFVELNRTAFRKILKKYDKVTGTSLSDDYMEEVV 275 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHhhhhccC
Confidence 99999999999999999999999999999998653
No 14
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.97 E-value=3.1e-29 Score=272.31 Aligned_cols=358 Identities=13% Similarity=0.149 Sum_probs=248.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchh-hhH-----HHHHHHHHHHHHhhhhhhhccccCchhHHHHHH
Q 005307 247 FTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATL-CGV-----IIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSI 320 (703)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~-~g~-----i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~ 320 (703)
++.+....++.++..++..++....|.+.++++.+... .++ +.++..++..++++++|+++||+|||+++.+++
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~ 94 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI 94 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 45666778899999999999999999888888533321 122 247788999999999999999999999999998
Q ss_pred HHH-HHHHHHHhhcccchhHH--------HHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHH
Q 005307 321 VLL-VGNTLYAMAYDLNSIAV--------LLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGP 389 (703)
Q Consensus 321 ~~~-~~~~~~~~a~~~~~~~~--------l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp 389 (703)
+++ +++++++++ ++++. ++++|+++|++.|. +...++++|++|+++||++.++...+..+|.++|+
T Consensus 95 ~l~~i~~~~~a~~---~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~ 171 (490)
T PRK10642 95 VIMSISTFCIGLI---PSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGA 171 (490)
T ss_pred HHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 766 999999999 88764 89999999999887 88999999999999999999999988888888888
Q ss_pred Hhhhhh----------cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCC
Q 005307 390 ALACLF----------QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDN 459 (703)
Q Consensus 390 ~i~~~l----------~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (703)
.++.++ .+|| |++|++.++++++.+ +....+||+|+....+++.++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~gW----------R~~f~i~~~~~l~~~-~~~~~~~esp~~~~~~~~~~~~------------ 228 (490)
T PRK10642 172 GVVVLISTIVGEANFLDWGW----------RIPFFIALPLGIIGL-YLRHALEETPAFQQHVDKLEQG------------ 228 (490)
T ss_pred HHHHHHHHhcCHHHhcCccH----------HHHHHHHHHHHHHHH-HHHHcCCCChhHHHHHHhhhhh------------
Confidence 766544 2455 999999876655433 3445688887643221000000
Q ss_pred CCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHH
Q 005307 460 GSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVI 539 (703)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (703)
+.+ . .......+++++++...+.+.......++..+.++.+..++|.|
T Consensus 229 -----------------~~~----------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 276 (490)
T PRK10642 229 -----------------DRE----------G-----LQDGPKVSFKEIATKHWRSLLTCIGLVIATNVTYYMLLTYMPSY 276 (490)
T ss_pred -----------------ccc----------c-----ccccccCCHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00001223444443111223333333344556677778889999
Q ss_pred hhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhh
Q 005307 540 TEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVA 619 (703)
Q Consensus 540 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (703)
+.+.+|++....++......++..++..+.+ +++||+|||+.+..+.++..++.+..+......+...++++.++.+++
T Consensus 277 l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 355 (490)
T PRK10642 277 LSHNLHYSEDHGVLIIIAIMIGMLFVQPVMG-LLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVI 355 (490)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 9888899888777777776777777777777 999999999988777654333222111110112334444555555666
Q ss_pred hhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 620 AEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
.+...+....++++.+|++ .||+..|..+. .+.+++.++|.+.+
T Consensus 356 ~~~~~g~~~~~~~~~~p~~-~Rg~~~g~~~~--~~~~~g~~~p~i~g 399 (490)
T PRK10642 356 LNCFTGVMASTLPAMFPTH-IRYSALAAAFN--ISVLVAGLTPTLAA 399 (490)
T ss_pred HHHHHHHHHHHHHHHCCCc-cchHHHHHHHH--HHHHHHHHHHHHHH
Confidence 6666667778888999999 89988887533 44456677887554
No 15
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.97 E-value=1e-29 Score=277.67 Aligned_cols=392 Identities=12% Similarity=0.086 Sum_probs=284.5
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNT 327 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~ 327 (703)
.+..++++.++..++..+..+.+|.+.+++|.+..+.+|+.+++.++.+++.+++|+++||+|||++++++.+.. ++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 82 (485)
T TIGR00711 3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSL 82 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 456677888889999999999999999999999999999999999999999999999999999999999987755 9999
Q ss_pred HHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccc
Q 005307 328 LYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYK 403 (703)
Q Consensus 328 ~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~ 403 (703)
+++++ ++++.++++|+++|++.+. +...+++.|++|+++|+++++++..+..+|..+||.+++++ .+||
T Consensus 83 ~~~~~---~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w---- 155 (485)
T TIGR00711 83 LCGVA---PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHW---- 155 (485)
T ss_pred HHhCc---CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCc----
Confidence 99999 9999999999999999887 88999999999999999999999999999999999999998 6787
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhccCCCcccccccccccccc---cc-ccccccCCCCCCcccccchhcccCC-cc
Q 005307 404 LTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANA---GL-LINCTVDNGSTRPLLLNSEAKQKDE-ND 478 (703)
Q Consensus 404 ~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 478 (703)
|+.|++.++++++..++.++.+|++++...++.+...... .. ........+....+........... ..
T Consensus 156 ------~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (485)
T TIGR00711 156 ------RWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGL 229 (485)
T ss_pred ------eehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHH
Confidence 9999999888887777777777775432111000000000 00 0000000000000000000000000 00
Q ss_pred ccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhh
Q 005307 479 DQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACL 558 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~ 558 (703)
.. .......+.....+..+...+.++.++...+..++..+.......+.|.|+++.+|+++.++|+.....
T Consensus 230 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~ 300 (485)
T TIGR00711 230 VA---------IIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPV 300 (485)
T ss_pred HH---------HHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 00 000000000001111122222377777777777777888778888899999999999999999999998
Q ss_pred hhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhcc-ccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccC
Q 005307 559 GLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSF-HILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSS 637 (703)
Q Consensus 559 ~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (703)
+++..++..+.+ ++.||+++|+.+.++..+.+++.+++. ......+.+......++.+++.+...+.......+..|+
T Consensus 301 ~~~~~~~~~~~g-~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~ 379 (485)
T TIGR00711 301 GLAPMLSSPIAG-RMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPP 379 (485)
T ss_pred HHHHHHHHHHHH-HHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 999989988888 999999999998888888877765443 222234455556667777888887777777777788888
Q ss_pred CCcccccchhhhHHhhhhhhhhhccceee
Q 005307 638 RLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 638 ~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+ .+|++.|.. .....+|..+|+.+.+
T Consensus 380 ~-~~g~~~~~~--~~~~~~g~~ig~~i~g 405 (485)
T TIGR00711 380 H-KIARGSSLS--NFTRQLGGSIGTALIT 405 (485)
T ss_pred H-HHhHHHHHH--HHHHHHHHHHHHHHHH
Confidence 8 899989988 4477889888888665
No 16
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.97 E-value=6.1e-30 Score=268.62 Aligned_cols=345 Identities=16% Similarity=0.168 Sum_probs=267.8
Q ss_pred HHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHH
Q 005307 252 LNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYA 330 (703)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~ 330 (703)
.++.+.++..++.++..+.+|.+..+++.++.++|++.+++.++.+++++++|+++||+|||++++.+.+.. ++.++.+
T Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~ 82 (365)
T TIGR00900 3 LLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP 82 (365)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH
Confidence 356778888889999999999999999999999999999999999999999999999999999999886654 7777777
Q ss_pred hhcccc-----hhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccc
Q 005307 331 MAYDLN-----SIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKI 401 (703)
Q Consensus 331 ~a~~~~-----~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~ 401 (703)
++ + +++.++++|++.|++.+. +...++++|++|+++|++++++.+.+..+|.++||++++++ .+||
T Consensus 83 ~~---~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~-- 157 (365)
T TIGR00900 83 FV---ALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGI-- 157 (365)
T ss_pred HH---HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhH--
Confidence 76 5 999999999999999887 88999999999999999999999999999999999999998 6787
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccc
Q 005307 402 YKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQE 481 (703)
Q Consensus 402 ~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (703)
+++|++.++..++..++.+. ++.++....+++ .
T Consensus 158 --------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~---------------------------------- 190 (365)
T TIGR00900 158 --------KWAIWVDAVGFAISALLIVS-VRIPELAASEIQ----A---------------------------------- 190 (365)
T ss_pred --------HHHHHHHHHHHHHHHHHHHh-cccccCCCcccc----c----------------------------------
Confidence 89998887766655544333 222211110000 0
Q ss_pred cCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHH-hhhhHHhhhhccccchhHHHHHHhhhh
Q 005307 482 LDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILL-AESSVITEHYFIWSTSRVAIFLACLGL 560 (703)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~ 560 (703)
.++ ....+....++.+++ +|.++..++..++..+...... .+.|.+..+.+|+++.+.|......++
T Consensus 191 --------~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (365)
T TIGR00900 191 --------LSN--AVLRDTREGIKFVLK--NPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGL 258 (365)
T ss_pred --------cch--hHHHHHHhHHHHHHc--CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHH
Confidence 000 000000112333333 6777777776666666665555 677888887789999999999999899
Q ss_pred hhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCc
Q 005307 561 TVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLS 640 (703)
Q Consensus 561 ~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (703)
+.+++..+.+ ++.||.++++.+..+..+.++++++..... + +.+...+..++.+++.+...+...+++.+.+|++ .
T Consensus 259 ~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~ 334 (365)
T TIGR00900 259 GALLGALLLG-LLGRYFKRMALMTGAIFVIGLAILVVGLTP-P-NFPLFLVLWFAIGVGYGPINVPQGTLLQRRVPAE-L 334 (365)
T ss_pred HHHHHHHHHH-HHHHHhchhHHHHHHHHHHHHHHHHHHhhc-h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-H
Confidence 9888888877 999999999988877666666654433331 1 3556667777888888888889999999999998 8
Q ss_pred ccccchhhhHHhhhhhhhhhccceee
Q 005307 641 RGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 641 ~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+|++.|..+. ...++..++|.+.+
T Consensus 335 ~g~~~~~~~~--~~~~~~~~g~~~~g 358 (365)
T TIGR00900 335 LGRVFGAQFS--LSHAAWPLGLILAG 358 (365)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 9999999844 77789999998554
No 17
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.97 E-value=1.2e-28 Score=262.12 Aligned_cols=348 Identities=13% Similarity=0.072 Sum_probs=264.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-V 324 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~ 324 (703)
.+....++.+..++..++..+..|.+|.+.+++|.++.+.++..+++.++..++.++.|+++||+|||++++.+.+.. +
T Consensus 11 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~ 90 (406)
T PRK15402 11 ALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFIL 90 (406)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 345556666777777788888999999999999999999999999999999999999999999999999999887655 8
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccccc
Q 005307 325 GNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFK 400 (703)
Q Consensus 325 ~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~ 400 (703)
++++++++ ++++.+++.|++.|++.+. +...+++.|.+|+++|++++++......+|..+||.+++++ ..+|
T Consensus 91 ~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w- 166 (406)
T PRK15402 91 TCLAILLA---QSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPW- 166 (406)
T ss_pred HHHHHHHH---ccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCc-
Confidence 88888888 9999999999999999887 77889999999999999999999988899999999999988 5677
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcccc
Q 005307 401 IYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQ 480 (703)
Q Consensus 401 ~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (703)
|++|++.+++.++..+..++..||+++...++
T Consensus 167 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 198 (406)
T PRK15402 167 ---------RGMFVLFAALAALSFFGLWRAMPETAGRVGEK--------------------------------------- 198 (406)
T ss_pred ---------cHHHHHHHHHHHHHHHHHHHhCCCCCcccccc---------------------------------------
Confidence 99999988888777766666667654321100
Q ss_pred ccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhh
Q 005307 481 ELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGL 560 (703)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~ 560 (703)
. ...+....++..++ +|.++...+..++.......+.+..|.++.+.+|+++.+.|.......+
T Consensus 199 ---------~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~ 262 (406)
T PRK15402 199 ---------L-----SLKELGRDYKLVLK--NRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFG 262 (406)
T ss_pred ---------c-----cHHHHHHHHHHHHc--CcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 0 00000112233333 7777776666666666556666667888888889999999988777777
Q ss_pred hhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhcccc--ccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCC
Q 005307 561 TVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHI--LVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSR 638 (703)
Q Consensus 561 ~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (703)
+..++..+.+ ++.||+++|+.+.++.++.+++.++.... ....+++..+++.++.+++.+...+..........+ +
T Consensus 263 ~~~~g~~~~g-~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~-~ 340 (406)
T PRK15402 263 ALIAGNLTLA-RLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGLANAGLYRLTLFSSD-V 340 (406)
T ss_pred HHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcc-c
Confidence 7777777777 99999999999888877776665433221 112334555666777778777766666555544433 4
Q ss_pred CcccccchhhhHHhhhhhhhhhccceee
Q 005307 639 LSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 639 ~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
.+|++.+.+ .....+|..+|+.+.+
T Consensus 341 -~~g~~~~~~--~~~~~~~~~~g~~~~~ 365 (406)
T PRK15402 341 -SKGTVSAAM--GMLSMLIFTVGIELSK 365 (406)
T ss_pred -cccHHHHHH--HHHHHHHHHHHHHHHH
Confidence 689888887 4466688888888554
No 18
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.97 E-value=1.2e-29 Score=270.47 Aligned_cols=377 Identities=15% Similarity=0.175 Sum_probs=266.9
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 005307 244 RYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL 323 (703)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~ 323 (703)
+.+|+.+..++++.++..++.....++.|.+.+++|.++.+.|++.+++.++.++++++.|.++||+|||++++.+.+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~ 87 (405)
T TIGR00891 8 RAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLF 87 (405)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 46788888999999999999999999999999999999999999999999999999999999999999999999887655
Q ss_pred -HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccc
Q 005307 324 -VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTN 398 (703)
Q Consensus 324 -~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g 398 (703)
++.++++++ ++++.++++|++.|++.+. +...+++.|++|+++|++++++.+.+..+|.++||.+++.+ ..+
T Consensus 88 ~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~ 164 (405)
T TIGR00891 88 SAGTLACGFA---PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG 164 (405)
T ss_pred HHHHHHHHHh---ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888889999 9999999999999999877 88899999999999999999999999999999999999988 444
Q ss_pred --ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCC
Q 005307 399 --FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDE 476 (703)
Q Consensus 399 --~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (703)
| |+.|++.++..++.+ +....+||++.....+++.++.. +...+. .
T Consensus 165 ~~w----------~~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------------~ 212 (405)
T TIGR00891 165 DGW----------RALFFISILPIIFAL-WLRKNIPEAEDWKEKHAGKALVR---TMVDIL------------------Y 212 (405)
T ss_pred ccH----------HHHHHHHHHHHHHHH-HHHHhCCCChhHHHHhhhhhhhh---hHHHHH------------------h
Confidence 6 899988765554443 34455677654322110000000 000000 0
Q ss_pred ccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHH
Q 005307 477 NDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLA 556 (703)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 556 (703)
+.+ .. ............+.......+.+........+..........++|.|+.+.+|++..+.+.+.+
T Consensus 213 ~~~----------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 281 (405)
T TIGR00891 213 GGE----------HR-IANIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVV 281 (405)
T ss_pred ccc----------hh-hhhhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHH
Confidence 000 00 0000000000000000000111222233333334444455667888988888999999999999
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhcc
Q 005307 557 CLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMS 636 (703)
Q Consensus 557 ~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (703)
..+++.+++..+.+ ++.||+++|+.+..+..+..+..+..+.. ..+.+...+..++.+++.+...+...+++++..|
T Consensus 282 ~~~~~~~~g~~~~g-~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (405)
T TIGR00891 282 FSNIGAIVGGCVFG-FLGDWLGRRKAYVCSLLAGQLLIIPVFAI--GANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFP 358 (405)
T ss_pred HHHHHHHHHHHHHH-HHHHHhCchhhhHHHHHHHHHHHHHHHHh--CCchHHHHHHHHHHHHHHccchhhHHHHHhhhCC
Confidence 99999999998888 99999999998887766553332222222 2233344444444455555566677788999999
Q ss_pred CCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 637 SRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 637 ~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
++ .+|++.|..+. ...+|..++|++.+ +.+..+
T Consensus 359 ~~-~~~~~~g~~~~--~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 359 TD-QRAAGLGFTYQ--LGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred cc-hhHHHhhHHHH--HHHHHHHHHHHHHHHHHHhcc
Confidence 98 89999999744 77899999999666 445444
No 19
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.97 E-value=5.5e-30 Score=267.57 Aligned_cols=343 Identities=19% Similarity=0.305 Sum_probs=265.2
Q ss_pred HHHHHHHHHhhhhhccchh-HHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHh
Q 005307 254 LVNTFLYMVNTYVIVPTAD-NYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAM 331 (703)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~-~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~ 331 (703)
+++.++..++.+...+.+| .+.+++|.++.++|++.+++.++..++++++|+++||+|||++++++.++. ++.++..+
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence 5677888888888999999 788889999999999999999999999999999999999999999887755 66666667
Q ss_pred hcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccc
Q 005307 332 AYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFN 407 (703)
Q Consensus 332 a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~ 407 (703)
+ ++++.++++|++.|++.+. +...+++.|++|+++|++++++...+..+|.++||.+++++ ..+|
T Consensus 82 ~---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~-------- 150 (352)
T PF07690_consen 82 A---SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGW-------- 150 (352)
T ss_dssp H---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHH--------
T ss_pred h---hhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccc--------
Confidence 7 7888999999999999876 89999999999999999999999999999999999999998 6777
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCC
Q 005307 408 EDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDH 487 (703)
Q Consensus 408 ~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (703)
|++|++.+++.++..++..++++++++......+.+
T Consensus 151 --~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~------------------------------------------ 186 (352)
T PF07690_consen 151 --RWAFLISAILSLIAAILFILFLPEPPPPRERESPKE------------------------------------------ 186 (352)
T ss_dssp --CCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTT------------------------------------------
T ss_pred --ccccccccchhhhhhhhHhhhhhhcccccccccccc------------------------------------------
Confidence 999999999998887765555666554333210000
Q ss_pred CCCcccccccCCCcc-cHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhcccc-chhHHHHHHhhhhhhhhH
Q 005307 488 DEDDEDSKITHRPVT-SIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWS-TSRVAIFLACLGLTVLPV 565 (703)
Q Consensus 488 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-~~~~g~~~~~~~~~~~~~ 565 (703)
.+ .+..++.. .++.+++ ++.++......++..+.......+.|.|+.+.+|++ ..+.+..+++.++++.++
T Consensus 187 --~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (352)
T PF07690_consen 187 --SE---SKKPKPLKPGFKSLFK--NPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIG 259 (352)
T ss_dssp --TT-----HHHCCCH-CTHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHH
T ss_pred --cc---cccccccccccccccc--cchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 00 00000111 2444444 555554555555555667778888899888889999 788999999999999999
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccc
Q 005307 566 NIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYN 645 (703)
Q Consensus 566 ~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 645 (703)
..+.+ ++.||+++++..........++.+.........+.....+..++.+++.+...+...+++.+..|++ .+|++.
T Consensus 260 ~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 337 (352)
T PF07690_consen 260 SLLAG-RLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIVFPILFSLIQELVPPE-YRGTAF 337 (352)
T ss_dssp HHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHTC-HHHHHH
T ss_pred HHHHH-HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH-HHHHHH
Confidence 88878 9999999877776666665555444333322233455555677778888888999999999999988 899999
Q ss_pred hhhhHHhhhhhhhhhcc
Q 005307 646 GGLLSTEAGTLARVIAD 662 (703)
Q Consensus 646 g~~~~~~~~~~g~~~gp 662 (703)
|..+ ...++|..+||
T Consensus 338 g~~~--~~~~~~~~igP 352 (352)
T PF07690_consen 338 GLFN--SIGSLGGIIGP 352 (352)
T ss_dssp HHHH--HHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHCC
Confidence 9984 47889988887
No 20
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.97 E-value=1.2e-28 Score=263.72 Aligned_cols=346 Identities=12% Similarity=0.094 Sum_probs=238.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcC---ccchhhhH---HHHHHHHHHHHHhhhhhhhccccCchhHHHHH
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLG---AAATLCGV---IIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSS 319 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~s~~~~g~---i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~ 319 (703)
++..+...+++.+++.++...+....|.+.++++ .+..+.+. +.++..++..++++++|+++||+|||+++.++
T Consensus 20 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~ 99 (432)
T PRK10406 20 RIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLIS 99 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 4455666677888899999998888898888874 44554433 44455556669999999999999999999999
Q ss_pred HHHH-HHHHHHHhhcccchh--------HHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHH
Q 005307 320 IVLL-VGNTLYAMAYDLNSI--------AVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACG 388 (703)
Q Consensus 320 ~~~~-~~~~~~~~a~~~~~~--------~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lg 388 (703)
++.. +++++++++ +++ ..++++|+++|++.|. +...++++|++|+++|+++.++...+...|.+++
T Consensus 100 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~ 176 (432)
T PRK10406 100 VCMMCFGSLVIACL---PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLA 176 (432)
T ss_pred HHHHHHHHHHHhhc---CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHH
Confidence 8766 999999998 665 3699999999999887 8899999999999999999999988888888888
Q ss_pred HHhhhhh----------cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccC
Q 005307 389 PALACLF----------QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVD 458 (703)
Q Consensus 389 p~i~~~l----------~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (703)
++++..+ .+|| |++|++.++++++.+ .....+||+++.+.+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~gW----------r~~F~i~~~~~ll~~-~~~~~~~e~~~~~~~------------------ 227 (432)
T PRK10406 177 LLVVVVLQQTLEDAELREWGW----------RIPFALGAVLAVVAL-WLRRQLDETSQQETR------------------ 227 (432)
T ss_pred HHHHHHHHHhCCHHHHhccch----------HHHHHHHHHHHHHHH-HHHhcCCCCchHHHh------------------
Confidence 8776554 2455 999998887766543 233345665432110
Q ss_pred CCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHH-HHHHHHHHHhhhh
Q 005307 459 NGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFM-LKYAMEILLAESS 537 (703)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 537 (703)
. .++..+++++++ +++.+...+..++ ....++.+.+++|
T Consensus 228 -------------------------------~-------~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~lp 267 (432)
T PRK10406 228 -------------------------------A-------LKEAGSLKGLWR--NRRAFIMVLGFTAAGSLCFYTFTTYMQ 267 (432)
T ss_pred -------------------------------h-------hcccccHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000123555554 5566555444443 3566677788899
Q ss_pred HHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccc-cccccchhHHHHHHHHH
Q 005307 538 VITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFH-ILVPYSVPQYVGSALIT 616 (703)
Q Consensus 538 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~ 616 (703)
.|+.+.+|++..+.+...++..++..+++.+.+ +++||++||+.+.++.++.++....... .....+....+....+.
T Consensus 268 ~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G-~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (432)
T PRK10406 268 KYLVNTAGMHANVASGIMTAALFVFMLIQPLIG-ALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCA 346 (432)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 999888899988888888887788788877777 9999999998877665543333221111 11011222222222222
Q ss_pred HhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 617 FVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+++.+...+....+.+|.+|++ .||+..|+.+.. ...+++...|.+.+
T Consensus 347 ~~~~~~~~~~~~~~~~e~fp~~-~r~t~~g~~~~~-g~~~~g~~~p~~~~ 394 (432)
T PRK10406 347 LLIVSFYTSISGILKAEMFPAQ-VRALGVGLSYAV-ANALFGGSAEYVAL 394 (432)
T ss_pred HHHHHHHHHHHHHHHHHHCCCC-ccchhhhHHHHH-HHHHHHhHHHHHHH
Confidence 2333334455667889999998 899999987542 22222334666444
No 21
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=7.4e-31 Score=270.56 Aligned_cols=169 Identities=25% Similarity=0.354 Sum_probs=144.7
Q ss_pred CCchhhhhhhccchhhhhccChhhHHHHHHhhhhhhhccc--------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 2 VAFGKKLKETQIQEWQGYYINYKLLKKKVNRYTQQIQVGA--------ENRLNVLKDFARMLDDQIEKIVLFLLEQQGAL 73 (703)
Q Consensus 2 mkFg~~l~~~~~~ew~~~yi~Y~~lK~~i~~~~~~~~~~~--------~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~ 73 (703)
|||||+|..+++|||++.|+||+.|||.||++.+..++.+ +...+.+..||+.||.|++|||+||.+|++|.
T Consensus 1 MKFgk~~~~q~~pEW~~ay~dY~~lK~~l~~i~~~~~~~~~t~~~~~~~~~~~~~~~Ff~~ld~el~Kvn~Fy~~k~~e~ 80 (617)
T KOG1162|consen 1 MKFGKELESQLVPEWRQAYIDYKYLKKLLKEIIENKPSSEETTFLMVSEEGGEFEEVFFRRLDEELNKVNKFYKEKVKEA 80 (617)
T ss_pred CcchHHHHHhcCHHHHHHhhhHHHHHHHHHHHHhcCCCcCccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987665432 22335678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCC------------------C-----chhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 005307 74 ASRLSDLGEHHDALSQHQ------------------D-----GSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKK 130 (703)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~------------------~-----~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK 130 (703)
.++.+.|++|++.+.+.+ . .+..++++.++.|+|..|..|++|+.||.||||||+||
T Consensus 81 ~~~~~~L~~ql~~~~~~r~~~~~~~~~~~~~~~~~~~f~~~~~~~e~~lk~af~Efy~~L~llk~y~~lN~~~f~KI~KK 160 (617)
T KOG1162|consen 81 REEAEELNKQLDALIALRVKSRSSVDISDRAARLRGKFTKVLRKAEEKLKLAFSEFYLKLRLLKNYQFLNVTAFRKILKK 160 (617)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999763211 0 22356789999999999999999999999999999999
Q ss_pred hhcccCCCCchHHHHhhhcCCCccchhhhhcccHhHHHHHHHHHHHH
Q 005307 131 FDKRFGYRFTDYYVKTRANHPYSQLRQVFKHVGIGAVVGAISRNLAE 177 (703)
Q Consensus 131 ~dK~~~~~~~~~~~~~~~~~~f~~~q~~~~~~~~~~~~~~i~~~~~~ 177 (703)
|||.++.+. ..|++.+..++|.+ .+++.++.+++|+...+
T Consensus 161 yDK~~~~~~-~~~~~~v~~s~f~~------~~~i~~l~~~Ve~~f~~ 200 (617)
T KOG1162|consen 161 YDKITSRDA-KRYVKMVDKSYFTS------SDEITRLMLEVEETFTK 200 (617)
T ss_pred HHhhcccch-HHHHHHHHHHhccc------HHHHHHHHHHHHHHHHH
Confidence 999999888 88888777667766 67778888888887654
No 22
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.97 E-value=1e-28 Score=260.08 Aligned_cols=339 Identities=17% Similarity=0.179 Sum_probs=252.3
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNT 327 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~ 327 (703)
.++.+.+..++..++.....+.+|.+.+++|.+..+.|++.+++.++..++++++|+++||+|||+++..+.+.. ++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~ 83 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNA 83 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHH
Confidence 456667788888888888999999999999999999999999999999999999999999999999999987655 9999
Q ss_pred HHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccc
Q 005307 328 LYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYK 403 (703)
Q Consensus 328 ~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~ 403 (703)
+++++ ++++.+++.|++.|++.|. +...+++.+++|+++|+++++++..+..+|..+||++++++ ..||
T Consensus 84 l~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gw---- 156 (382)
T PRK10091 84 MFTLS---SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSW---- 156 (382)
T ss_pred HHHHh---CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccH----
Confidence 99999 9999999999999999887 77778899999999999999999999999999999999988 6687
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccC
Q 005307 404 LTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELD 483 (703)
Q Consensus 404 ~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (703)
|++|++.+++.++..+..++.+||.++....
T Consensus 157 ------r~~f~~~~~~~~~~~~~~~~~lp~~~~~~~~------------------------------------------- 187 (382)
T PRK10091 157 ------RYTFLLIAVFNIAVLASIYFWVPDIRDEAKG------------------------------------------- 187 (382)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhCCCCCccccc-------------------------------------------
Confidence 9999999988777766666667775321000
Q ss_pred CCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhh
Q 005307 484 NDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVL 563 (703)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~ 563 (703)
.....++ ..++++.+......++.........++.++++.+.+|+++.+.+++.++.+++.+
T Consensus 188 ---------------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ 249 (382)
T PRK10091 188 ---------------GLREQFH---FLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMV 249 (382)
T ss_pred ---------------CHHHHHH---HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 0000111 1125555555444444444444555667778877789999999999999999999
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHH-HHHhhccCCCccc
Q 005307 564 PVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLS-LLSRVMSSRLSRG 642 (703)
Q Consensus 564 ~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g 642 (703)
++..+.+ ++.||+++++.+..+..+.++++++..... .+.+...+..++.+++.....+.... ...+..+++ ..|
T Consensus 250 ig~~~~g-~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~ 325 (382)
T PRK10091 250 LGNLLSG-RLSGRYSPLRIAAVTDFIIVLALLMLFFFG--GMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGE-LLG 325 (382)
T ss_pred HHhHHHh-eeccccCchhHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcch-HHH
Confidence 9998878 999999999998888877777754433221 22233344444445544433333333 333333333 344
Q ss_pred ccchhhhHHhhhhhhhhhccceee-eec
Q 005307 643 TYNGGLLSTEAGTLARVIADGTIT-LSG 669 (703)
Q Consensus 643 ~~~g~~~~~~~~~~g~~~gp~~~~-~~~ 669 (703)
.. .. .....+|..+||.+++ +.+
T Consensus 326 ~~--~~--~~~~~~g~~~Gp~~~G~l~~ 349 (382)
T PRK10091 326 AA--GG--QIAFNLGSAIGAYCGGMMLT 349 (382)
T ss_pred HH--HH--HHHHHHHHHHHHHHhHHHHH
Confidence 32 22 3356799999999666 344
No 23
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.97 E-value=3.5e-29 Score=266.04 Aligned_cols=359 Identities=15% Similarity=0.105 Sum_probs=259.4
Q ss_pred HHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccc
Q 005307 258 FLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLN 336 (703)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~ 336 (703)
++..++...+.+..|.+.+++|.++.+.|++.+++.++.+++.+++|+++||+|||+++..+.+.. ++.++++++ +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---~ 80 (399)
T TIGR00893 4 VINYLDRANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA---G 80 (399)
T ss_pred hHHHHHHHhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH---c
Confidence 345566677778888999999999999999999999999999999999999999999998887655 888999999 8
Q ss_pred hhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhH
Q 005307 337 SIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLP 412 (703)
Q Consensus 337 ~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~ 412 (703)
+++.++++|++.|++.+. +...+++.|++|+++|++++++......+|.++||.+++.+ ..+| |++
T Consensus 81 ~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~----------~~~ 150 (399)
T TIGR00893 81 AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSW----------QWA 150 (399)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCc----------hHH
Confidence 999999999999999877 88999999999999999999999999999999999999987 6787 999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcc
Q 005307 413 GWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDE 492 (703)
Q Consensus 413 f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (703)
|++.+++.++..++.++..||++.......++++.. .. +....+ . +
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----------------~~~~~~----------~-~ 196 (399)
T TIGR00893 151 FIIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYI-------VV----------------GGLLAE----------Q-Q 196 (399)
T ss_pred HHHHHHHHHHHHHHhhheecCCCCccccCCHHHHhh-------cc----------------hhhccc----------c-c
Confidence 999888887777666666777654322100000000 00 000000 0 0
Q ss_pred cccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhh
Q 005307 493 DSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNY 572 (703)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~ 572 (703)
............++..+ +++++...+..++.......+..++|.|+.+.+|+++.+.++..++.+++.+++..+.+ +
T Consensus 197 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~ 273 (399)
T TIGR00893 197 GKGPSTPKKYQIKELLK--DRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGG-R 273 (399)
T ss_pred cccccCCCccchHHHhc--CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHH-H
Confidence 00000111123333433 77888888888888888888888899999988999999999999998899888888877 9
Q ss_pred hhhhhhhHH--HHHHHHHHHHH---HHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchh
Q 005307 573 ISNIFEERQ--VLLASEIIVCI---GILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGG 647 (703)
Q Consensus 573 l~~r~g~r~--~~~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 647 (703)
+.||+++|+ ........... ..+...........+..+....+.+.+.+ ..+...+++++..|++ .+|++.|.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~g~~~~~ 351 (399)
T TIGR00893 274 LSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGN-IAGLTGGL 351 (399)
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChh-HHHHHHHH
Confidence 999999986 11111111111 11111111101222233323333233333 6788889999999998 89999999
Q ss_pred hhHHhhhhhhhhhccceee-eecc
Q 005307 648 LLSTEAGTLARVIADGTIT-LSGY 670 (703)
Q Consensus 648 ~~~~~~~~~g~~~gp~~~~-~~~~ 670 (703)
.+ ....+|..++|.+.+ +.+.
T Consensus 352 ~~--~~~~~g~~~~~~i~g~l~~~ 373 (399)
T TIGR00893 352 IN--SLGNLGGIVGPIVIGAIAAT 373 (399)
T ss_pred HH--HHHHHhhhhhhHHhhhhccC
Confidence 84 477899999999665 4443
No 24
>PRK10504 putative transporter; Provisional
Probab=99.97 E-value=1.9e-28 Score=266.14 Aligned_cols=390 Identities=16% Similarity=0.129 Sum_probs=275.9
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNT 327 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~ 327 (703)
.+++++++.++..++.+...+.+|.+.+++|.++.+.|++.+.+.++..++.+++|+++||+|||++++.+.+.. ++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 90 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSL 90 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 456777888888889888999999999999999999999999999999999999999999999999998886655 7888
Q ss_pred HHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccc
Q 005307 328 LYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYK 403 (703)
Q Consensus 328 ~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~ 403 (703)
+++++ ++++.++++|+++|++.+. +...+++.|++|+++|++++++.....++|..+||.+++.+ ..||
T Consensus 91 ~~~~~---~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw---- 163 (471)
T PRK10504 91 FCALS---GTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASW---- 163 (471)
T ss_pred HHHHh---CCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccH----
Confidence 88888 8999999999999999887 88899999999999999999999999999999999999988 6787
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhccCCCcccccccccccccccc----------ccccccCCCCCCcccccchhcc
Q 005307 404 LTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGL----------LINCTVDNGSTRPLLLNSEAKQ 473 (703)
Q Consensus 404 ~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 473 (703)
|+.|++..++..+..+......|+.+....+ .+...... ...+....+...+.....-.-.
T Consensus 164 ------~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (471)
T PRK10504 164 ------HWIFLINIPVGIIGAIATLMLMPNYTMQTRR---FDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVG 234 (471)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhCCCccccCCC---CChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHH
Confidence 9999998888777776666655554322111 00000000 0000000000000000000000
Q ss_pred cCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHH
Q 005307 474 KDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAI 553 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 553 (703)
. ....- ....+....++..+.+ +++ ++.++..++..++...+......+.|.|++..+|.++...++
T Consensus 235 ~-~~~~~---------~~~~~~~~~~~~~~~~-l~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~ 301 (471)
T PRK10504 235 V-VALLL---------YLLHARNNNRALFSLK-LFR--TRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGL 301 (471)
T ss_pred H-HHHHH---------HHHHHhcCCCCccCHH-Hhc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 0 00000 0000000001111221 223 788888777777777777777777888888888999999999
Q ss_pred HHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 005307 554 FLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSR 633 (703)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (703)
.+....++..++..+.+ ++.||+|+|+++..+..+.+++.+++.........+...+..++.+++.+...+....+..+
T Consensus 302 ~~~~~~~~~~~~~~~~~-~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 380 (471)
T PRK10504 302 MMIPMVLGSMGMKRIVV-QVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLK 380 (471)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777777777777 99999999999888877766664433322112223333344555567777777888888989
Q ss_pred hccCCCcccccchhhhHHhhhhhhhhhccceee-eeccc
Q 005307 634 VMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYL 671 (703)
Q Consensus 634 ~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~ 671 (703)
.+|++ .+|+..|.. ++...+|..+||.+.+ +.+..
T Consensus 381 ~~~~~-~~g~~~~~~--~~~~~~g~~ig~~i~g~ll~~~ 416 (471)
T PRK10504 381 DLPDN-LASSGNSLL--SMIMQLSMSIGVTIAGLLLGLF 416 (471)
T ss_pred cCCHH-hccchHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 99988 899888887 5578889999988776 44433
No 25
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.97 E-value=2.3e-28 Score=258.25 Aligned_cols=341 Identities=16% Similarity=0.166 Sum_probs=255.6
Q ss_pred HHHHHHHHHHHHhhhhhccchhHH-HHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHH
Q 005307 251 LLNLVNTFLYMVNTYVIVPTADNY-SLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTL 328 (703)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~ 328 (703)
.+++...++...+.....|.++.+ .+++|.|+.++|++.++..++..+.++++|+++||+|||++++++.+.. ++.++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~ 92 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFAT 92 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 456678888888888888888876 4679999999999999999999999999999999999999999997755 88888
Q ss_pred HHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccc
Q 005307 329 YAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKIYKLT 405 (703)
Q Consensus 329 ~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~~~ 405 (703)
+.++ ++++.++++|++.|++.+. +...+++.|++|+++|++++|+......+|..+||++++++ .+||
T Consensus 93 ~~~~---~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~------ 163 (400)
T PRK11646 93 MAIA---HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDF------ 163 (400)
T ss_pred HHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH------
Confidence 8888 8999999999999999876 78889999999999999999999999999999999999999 8787
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCC
Q 005307 406 FNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDND 485 (703)
Q Consensus 406 ~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (703)
+++|++.+++.++..++..+.+||.+.....
T Consensus 164 ----~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~--------------------------------------------- 194 (400)
T PRK11646 164 ----RLVCATGAVLFVLAAAFNAWLLPAYKLSTVR--------------------------------------------- 194 (400)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhCCcccccccc---------------------------------------------
Confidence 9999998877776665555555542110000
Q ss_pred CCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhH
Q 005307 486 DHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPV 565 (703)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 565 (703)
......++...+ +++++...+..+...........+.|.|.++..+ ++.+.|..+++.+++...+
T Consensus 195 ------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~ 259 (400)
T PRK11646 195 ------------TPVREGMTRVLR--DKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTL 259 (400)
T ss_pred ------------hhhHHHHHHHHc--CchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHH
Confidence 000112333333 6666554444444333333344567888877544 7788888888877776666
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccc
Q 005307 566 NIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYN 645 (703)
Q Consensus 566 ~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 645 (703)
....+++..||++.++.+..+..+.+++.+++... .+.+...+..++++++.+...|...+++.+..|++ .+|++.
T Consensus 260 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~-~~g~~~ 335 (400)
T PRK11646 260 LYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV---SNLQQLFTLICLFYIGSIIAEPARETLSASLADAR-ARGSYM 335 (400)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHccHHHHHHhcCCcc-cchhhh
Confidence 66666344456666666667766666665433222 23444445556667777777888889999999988 899999
Q ss_pred hhhhHHhhhhhhhhhccceee-eecc
Q 005307 646 GGLLSTEAGTLARVIADGTIT-LSGY 670 (703)
Q Consensus 646 g~~~~~~~~~~g~~~gp~~~~-~~~~ 670 (703)
|.. .....+|..+||.+++ +.+.
T Consensus 336 g~~--~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 336 GFS--RLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred hHH--HHHHHHHHHhcccchHHHHHH
Confidence 987 4477899999999777 4443
No 26
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.97 E-value=2.3e-28 Score=258.72 Aligned_cols=343 Identities=11% Similarity=0.099 Sum_probs=261.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHH
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGN 326 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~ 326 (703)
+.+..+.+..++...+.....|.+|.+.+++|.++.+.|++.+++.++..++++++|+++||+|||+++..+.+.. ++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~ 84 (385)
T TIGR00710 5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSS 84 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHH
Confidence 3444455555667778889999999999999999999999999999999999999999999999999999887655 888
Q ss_pred HHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccccccc
Q 005307 327 TLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIY 402 (703)
Q Consensus 327 ~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~ 402 (703)
++++++ ++++.++++|++.|++.+. +...+++.|++|+++|++++++.+....+|..+||.+++.+ .++|
T Consensus 85 ~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~--- 158 (385)
T TIGR00710 85 LGLALS---NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSW--- 158 (385)
T ss_pred HHHHHH---ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH---
Confidence 888999 9999999999999999887 88899999999999999999999999999999999999988 6787
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcccccc
Q 005307 403 KLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQEL 482 (703)
Q Consensus 403 ~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (703)
|++|++.+++.++..+..++..||+++...+.
T Consensus 159 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------- 190 (385)
T TIGR00710 159 -------HAIFAFLSLAGILLSALIFFILPETLPYEARI----------------------------------------- 190 (385)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhCCCCCCCcccC-----------------------------------------
Confidence 99999988887777766666666654321100
Q ss_pred CCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhh
Q 005307 483 DNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTV 562 (703)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~ 562 (703)
........++...+ +++++...+...+..........+.|.++.+.+|+++.+.|.+....+++.
T Consensus 191 -------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~ 255 (385)
T TIGR00710 191 -------------QISTYFETFLLLLK--SKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAM 255 (385)
T ss_pred -------------CHHHHHHHHHHHHc--CchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 00000112223333 677777666666666666667777888888889999999999998888888
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccc--cccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCc
Q 005307 563 LPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHIL--VPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLS 640 (703)
Q Consensus 563 ~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (703)
+++..+.+ ++.||+++|+.+..+..+..++.++..... ........+...++.+++.+...+.......+..|+ .
T Consensus 256 ~~~~~~~g-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~ 332 (385)
T TIGR00710 256 IFGGFLNG-RFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPH--V 332 (385)
T ss_pred HHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc--c
Confidence 88888877 999999999988877766666544332211 112233444455666777777778888888887775 4
Q ss_pred ccccchhhhHHhhhhhhhhhccc
Q 005307 641 RGTYNGGLLSTEAGTLARVIADG 663 (703)
Q Consensus 641 ~g~~~g~~~~~~~~~~g~~~gp~ 663 (703)
+|++.+..+.. ....|.+.+|.
T Consensus 333 ~g~~~~~~~~~-~~~~g~i~~~~ 354 (385)
T TIGR00710 333 AGTASALFGTL-RLVLGAIVGYL 354 (385)
T ss_pred chHHHHHHHHH-HHHHHHHHHHH
Confidence 88888876432 23345555555
No 27
>PRK03699 putative transporter; Provisional
Probab=99.97 E-value=2.8e-28 Score=257.87 Aligned_cols=346 Identities=11% Similarity=0.028 Sum_probs=260.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-V 324 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~ 324 (703)
+|+..+..+++.++.........+.+|.+.+++|.|..+.|++.+++.++..++++++|+++||+|||++++.+.+.. +
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i 84 (394)
T PRK03699 5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMIL 84 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456667777888888888888889999999999999999999999999999999999999999999999999887655 8
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh---cccc
Q 005307 325 GNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF---QTNF 399 (703)
Q Consensus 325 ~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l---~~g~ 399 (703)
+.++++++ ++++.++++|++.|++.|. +...+++.|++|+++|+++++..+....+|..++|.+.+.+ ..||
T Consensus 85 ~~~l~~~~---~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw 161 (394)
T PRK03699 85 AVAGLMFS---HSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEW 161 (394)
T ss_pred HHHHHHHc---chHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 88899999 9999999999999999886 77889999999999999999999999999999999998876 4577
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccc
Q 005307 400 KIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDD 479 (703)
Q Consensus 400 ~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (703)
|++|++.+++.++.+++.++ .+.|+...+++ +
T Consensus 162 ----------~~~f~~~~~~~~~~~~~~~~--~~~p~~~~~~~------------------------------------~ 193 (394)
T PRK03699 162 ----------YWVYACIGLVYVAIFILTLF--SEFPALGKHAP------------------------------------K 193 (394)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHh--cCCccccccCc------------------------------------c
Confidence 99999888777665544332 22222111000 0
Q ss_pred cccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhh
Q 005307 480 QELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLG 559 (703)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 559 (703)
.+ . ...+..+ ++.++...+..++...+.+.+..+.|.|+.+.+|+++.+.+.+.+...
T Consensus 194 ----------~~----~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~ 251 (394)
T PRK03699 194 ----------AD----K-PVAKEKW-------GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFW 251 (394)
T ss_pred ----------cc----C-ccccccC-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHH
Confidence 00 0 0000011 445566666666666667778888999998889999999999998888
Q ss_pred hhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCC
Q 005307 560 LTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRL 639 (703)
Q Consensus 560 ~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (703)
++..++..+.+ ++.||+++|+.+..+..+.++++.+.... .+.+...+..++.+++.+...+...+...+..|.+
T Consensus 252 ~~~~ig~~~~g-~l~dr~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~- 326 (394)
T PRK03699 252 MAYMVGMWIFS-FIVRFFDLQRILTVLAGLALVLMYLFVNT---DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTKVA- 326 (394)
T ss_pred HHHHHHHHHHH-HHHHHhchhhHHHHHHHHHHHHHHHHHHc---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-
Confidence 88888888877 99999999998877766655554433222 23333444555666666666777777777776654
Q ss_pred cccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 640 SRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 640 ~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
++...|.. .....+|..++|.+.+ +.+..+
T Consensus 327 -~~~~~g~~--~~~~~~g~~i~p~~~G~l~~~~g 357 (394)
T PRK03699 327 -SPKLVNFI--LTCGTIGTMLTFVVTSPIVAHFG 357 (394)
T ss_pred -CHHHHHHH--HHhhhHHHHHHHHHHHHHHHHhC
Confidence 45556666 3367799999999766 444444
No 28
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.97 E-value=4.8e-29 Score=263.06 Aligned_cols=329 Identities=14% Similarity=0.109 Sum_probs=247.2
Q ss_pred hhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHH
Q 005307 264 TYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLL 342 (703)
Q Consensus 264 ~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~ 342 (703)
.....+.+|.+.+++|.+..+.|++.+++.++..++++++|+++||+|||+++..+.+.. ++.++++++ ++++.++
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 95 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA---DSLAALY 95 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH---HHHHHHH
Confidence 445678899999999999999999999999999999999999999999999999887655 899999999 9999999
Q ss_pred HHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHH
Q 005307 343 IGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMAL 418 (703)
Q Consensus 343 i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~ 418 (703)
++|++.|++.+. +.....+.+++| ++|++++++...+.++|.++++++.+.+ ..|| |+.|++.++
T Consensus 96 ~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------~~~f~~~~~ 164 (377)
T TIGR00890 96 LTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGV----------PAAFIYMGI 164 (377)
T ss_pred HHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccH----------HHHHHHHHH
Confidence 999999999886 666777888887 6799999999999999988765555544 6677 999999998
Q ss_pred HHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccC
Q 005307 419 LWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITH 498 (703)
Q Consensus 419 ~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (703)
+.++..+..+++++++++...+++ . ...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~-----~~~ 192 (377)
T TIGR00890 165 IFLLVIVLGAFLIGYPPGQLIKTN-----------------------------------------------I-----EVS 192 (377)
T ss_pred HHHHHHHHHHHheecCchhccccC-----------------------------------------------c-----ccc
Confidence 888877777666666543211100 0 000
Q ss_pred CCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhh
Q 005307 499 RPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFE 578 (703)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g 578 (703)
......++..+ ++.++...+..++..+.......+++.|.+ .+|++..+.+...++.+++.+++..+.+ ++.||++
T Consensus 193 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~g 268 (377)
T TIGR00890 193 VKDYTVWEMLR--TPQFWVLYLSFFLNAVSGLLLIGLYKPYGQ-SLGLSDGFLVLAVSISSIFNGGGRPFLG-ALSDKIG 268 (377)
T ss_pred hhhhhHHHHHc--CccHHHHHHHHHHHhHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 00012223333 666666666555555555555555666654 4788888889888888999989988888 9999999
Q ss_pred hHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhh
Q 005307 579 ERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLAR 658 (703)
Q Consensus 579 ~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~ 658 (703)
+|+.+.++..+.+++.++..... ...........++.+++.+...+...+++++.+|++ .+|++.|..+ ....+|.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~--~~~~~g~ 344 (377)
T TIGR00890 269 RQKTMSIVFGISAVGMAAMLFIP-MLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPA-NSAANYGFLY--TAKAVAG 344 (377)
T ss_pred hhhhhhHHHHHHHHHHHHHHHcc-cchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhh-hhhhHhHHHH--HHHHHHH
Confidence 99998888877777765443321 112222333445556666666667778899999998 8999999984 4778999
Q ss_pred hhccceee
Q 005307 659 VIADGTIT 666 (703)
Q Consensus 659 ~~gp~~~~ 666 (703)
.++|.+.+
T Consensus 345 ~~~~~~~g 352 (377)
T TIGR00890 345 IFGGLIAS 352 (377)
T ss_pred HHHHHHHH
Confidence 99999665
No 29
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.97 E-value=2e-28 Score=262.65 Aligned_cols=355 Identities=17% Similarity=0.162 Sum_probs=252.8
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 005307 244 RYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL 323 (703)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~ 323 (703)
+.+++.+..++++.+...++.....+.+|.+.+++|.++.+.+++.+++.++..++++++|+++||+|||++++++.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~ 93 (426)
T PRK12307 14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAY 93 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 45677778888888888999999999999999999999999999999999999999999999999999999999997755
Q ss_pred -HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccc
Q 005307 324 -VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTN 398 (703)
Q Consensus 324 -~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g 398 (703)
++.++++++ ++++.++++|++.|++.|. +....++.|++|+++|++++++...+.++|.+++|.+++.+ ..+
T Consensus 94 ~~~~~~~~~~---~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~ 170 (426)
T PRK12307 94 SVGTGLSGLA---SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG 170 (426)
T ss_pred HHHHHHHHHH---hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC
Confidence 888999999 9999999999999999876 88899999999999999999999999999999999988887 678
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcc
Q 005307 399 FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEND 478 (703)
Q Consensus 399 ~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (703)
| |++|++..+..++ .+......||+++...++. + ++.
T Consensus 171 w----------~~~f~i~~~~~~~-~~~~~~~~p~~~~~~~~~~--~-----------------------------~~~- 207 (426)
T PRK12307 171 W----------RAAFFVGLLPVLL-VIYIRARAPESKEWEEAKL--S-----------------------------GKG- 207 (426)
T ss_pred H----------HHHHHHHHHHHHH-HHHHHHHCCCChHHHHhhh--h-----------------------------ccc-
Confidence 7 9999875543322 2222222344332111100 0 000
Q ss_pred ccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHH---HHHHHHHHHHHhhhhHHhhhhccccchhHHHHH
Q 005307 479 DQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVY---FMLKYAMEILLAESSVITEHYFIWSTSRVAIFL 555 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 555 (703)
+ ..+. ........++++++ ++.++...... ++.......+..++|.|+.+ .|+++...+...
T Consensus 208 ~----------~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~ 272 (426)
T PRK12307 208 K----------HSQS--AWSVFSLSMKGLFN--RAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAG-EGFDTGVVSNLM 272 (426)
T ss_pred c----------cccc--chhhhhHHHHHHHh--hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH
Confidence 0 0000 00000112334443 45544333222 22222223355677888776 589999999888
Q ss_pred HhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhh--hhhhHHHHHHHHh
Q 005307 556 ACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAA--EVLEGVNLSLLSR 633 (703)
Q Consensus 556 ~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 633 (703)
++.+++.+++..+.+ ++.||+++|+.+..+.++.++.+++..... ..... .+..++++++. ....+....++.+
T Consensus 273 ~~~~~~~~~g~~~~g-~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (426)
T PRK12307 273 TAAAFGTVLGNIVWG-LCADRIGLKKTFSIGLLMSFLFIFPLFRIP-QDNYL--LLGACLFGLMATNVGVGGLVPKFLYD 348 (426)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHHHHc-cccHH--HHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 888888888888877 999999999988888766665544332221 11121 12222323222 2233456677889
Q ss_pred hccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 634 VMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 634 ~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
.+|++ .+|+++|..+. ...+|+.++|.+.+
T Consensus 349 ~~p~~-~~g~~~g~~~~--~~~~~~~~gp~~~g 378 (426)
T PRK12307 349 YFPLE-VRGLGTGLIYN--LAATSGTFNSMAAT 378 (426)
T ss_pred hCcHH-HHhhhhhHHHH--HHhHHHHHHHHHHH
Confidence 99998 89999998743 77789999999665
No 30
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.97 E-value=2.2e-28 Score=262.59 Aligned_cols=375 Identities=12% Similarity=0.031 Sum_probs=260.9
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHH
Q 005307 241 VEQRYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSI 320 (703)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~ 320 (703)
++..+.|..+...++..+............+|.+.+++|.+..+.+++.+.+.++..++.+++|+++||+|||++++.+.
T Consensus 12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~ 91 (455)
T TIGR00892 12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGG 91 (455)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhH
Confidence 44456676666655555544444444566789999999999999999999999999999999999999999999999887
Q ss_pred HHH-HHHHHHHhhcccchhHHHHH-HHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-
Q 005307 321 VLL-VGNTLYAMAYDLNSIAVLLI-GRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF- 395 (703)
Q Consensus 321 ~~~-~~~~~~~~a~~~~~~~~l~i-~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l- 395 (703)
+.. +++++++++ ++++.+++ .|++.|++.|. +...+++.++++ ++|++++|+.+.+..+|..++|++++++
T Consensus 92 ~~~~~~~~~~~~~---~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~ 167 (455)
T TIGR00892 92 LLASLGMILASFS---SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLF 167 (455)
T ss_pred HHHHHHHHHHHHh---hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 655 888899999 89998875 56999999876 666678888885 7899999999999999999999999988
Q ss_pred -cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhccc
Q 005307 396 -QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQK 474 (703)
Q Consensus 396 -~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (703)
.+|| |++|++.+++.++..+..++..|+.+.+...+.+.+ +..+...
T Consensus 168 ~~~gw----------r~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---------~~~~~~~------------- 215 (455)
T TIGR00892 168 ESFGW----------RGSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSK---------EGLPPDG------------- 215 (455)
T ss_pred HHhCh----------HHHHHHHHHHHHHHHHHHHHhCCCCccccccccccc---------ccCCCCC-------------
Confidence 6788 999999998887666554444443221111000000 0000000
Q ss_pred CCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHH
Q 005307 475 DENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIF 554 (703)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~ 554 (703)
.. .+.......+...+..+...+.+|.++..++..++..++.....+++|.|..+ .|++..+++++
T Consensus 216 ----------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-~g~s~~~~g~~ 281 (455)
T TIGR00892 216 ----------ST---KKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKD-KGVDEYEAAFL 281 (455)
T ss_pred ----------cc---ccccccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHH-cCCCHHHHHHH
Confidence 00 00000000000011111111227777777777777777776777788888876 69999999999
Q ss_pred HHhhhhhhhhHHHHHHhhhhhh--hhhHHHHHHHH--HHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHH
Q 005307 555 LACLGLTVLPVNIIVGNYISNI--FEERQVLLASE--IIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSL 630 (703)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~l~~r--~g~r~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (703)
.++.+++.++++.+.+ ++.|| +++++...++. .+.++++++. .. ..+.+.+++..++.|++.+...+...++
T Consensus 282 ~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~-~~--~~~~~~~~i~~~~~G~~~g~~~~~~~~~ 357 (455)
T TIGR00892 282 LSIIGFVDIFARPSCG-LIAGLKWIRPHVQYLFSFALLFNGLTHLLC-AL--AGDYTGLVIYCIFFGLSFGSVGALLFEV 357 (455)
T ss_pred HHHHHHHHHHHHHHHH-HHhcccccCHHHHHHHHHHHHHHHHHHHHH-HH--hchHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 9999999888888877 88887 33443333332 2222332222 11 2345566667777788888888888999
Q ss_pred HHhhccCCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 631 LSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 631 ~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
+.+.+|++ .+|+..|+++ ....+|.++||.+++ +.+..+
T Consensus 358 ~~~~~~~~-~~g~~~g~~~--~~~~lg~~igp~i~G~l~~~~g 397 (455)
T TIGR00892 358 LMDLVGAQ-RFSSAVGLVT--IVECCAVLIGPPLAGRLVDATK 397 (455)
T ss_pred HHHHhhHH-HHhhHHhHHH--HHHHHHHHccccceeeeehhcC
Confidence 99999988 8899999984 477899999999887 555443
No 31
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.97 E-value=6.4e-29 Score=245.01 Aligned_cols=382 Identities=16% Similarity=0.135 Sum_probs=299.5
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH-
Q 005307 244 RYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL- 322 (703)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~- 322 (703)
+.+++.+++..++..+..+...+..+..+.+.+++|+|+.|.+++.++..+...+..++.|.+.||+|-|++..++++.
T Consensus 10 ~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~ 89 (417)
T COG2223 10 RIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL 89 (417)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence 4566777888888888888888888888888899999999999999999999999999999999999988888888665
Q ss_pred HHHHHHHHhhcccchhHHHHHHHHHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccc-
Q 005307 323 LVGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTN- 398 (703)
Q Consensus 323 ~~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g- 398 (703)
.+.++..+++...++++.+++.+++.|+++|. ++...+++.++|++++|.++|+.. ..++|..+...++-.+ ..+
T Consensus 90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~ 168 (417)
T COG2223 90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGF 168 (417)
T ss_pred HHHHHHHHHHccCCchHHHHHHHHHHhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhh
Confidence 48888888886567778999999999999999 999999999999999999999999 8788877777666666 445
Q ss_pred --ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCC
Q 005307 399 --FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDE 476 (703)
Q Consensus 399 --~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (703)
| +.+.++..+..++..+..++.+.+.|..+...
T Consensus 169 ~~w----------~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~----------------------------------- 203 (417)
T COG2223 169 LAW----------RNVAGIYVVALAIAAVLAWLGMNDVPEHRASV----------------------------------- 203 (417)
T ss_pred HHH----------HHHHHHHHHHHHHHHHHHHHHhCCChhhhccc-----------------------------------
Confidence 5 88888888888888888888888777642210
Q ss_pred ccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHH
Q 005307 477 NDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLA 556 (703)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 556 (703)
+...+ ..++.+.+ ++.+|.+.+.++....++.++..++|.|++++||.++.++|...+
T Consensus 204 -------------------~~~~~-~~~~~v~~--~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~ 261 (417)
T COG2223 204 -------------------KPQLP-AQLKAVFS--NKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAF 261 (417)
T ss_pred -------------------cccch-hHHHHHhc--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHH
Confidence 00000 23444444 899999999999999999999999999999999999999999888
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccc----cccchhHHHHHHHHHHhhhhhhhHHHHHHHH
Q 005307 557 CLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHIL----VPYSVPQYVGSALITFVAAEVLEGVNLSLLS 632 (703)
Q Consensus 557 ~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (703)
...+.+.+.+.+-| +++||+|.++.+.+.+..++++..+..... ...+.+.++...+..++..+......+.+++
T Consensus 262 ~f~~~g~l~Rp~GG-~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnGsvfk~Ip 340 (417)
T COG2223 262 LFPLIGALARPLGG-WLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNGSVFKMIP 340 (417)
T ss_pred HHHHHHHHHHhccc-hhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHHHhccCcchheeech
Confidence 88888888888855 999999999999888888777765433221 1134555555566667777777788888888
Q ss_pred hhccCCCcccccchhhhHHhhhhhhhhhccceee-eeccccCCcccccchhHHHHHHHHHHHHHHHhhcc
Q 005307 633 RVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLGESRLLNVTLLPSLFICISSIVATCITYNS 701 (703)
Q Consensus 633 ~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (703)
.++|++ .|.+.|++ .+.+.+|++.-|...+ .....+. ....+..+..+.+++.+.....|++
T Consensus 341 ~if~~~--~G~v~G~v--ga~G~lGGf~lp~~~g~~~~~tg~---~~~~f~~~~~~~~~a~v~~~~~y~r 403 (417)
T COG2223 341 VIFPKE--TGAVTGIV--GAIGGLGGFFLPLAFGVSLDLTGS---YTGAFMLLLAFYLVALVLTWALYAR 403 (417)
T ss_pred HHHHhh--hhHHHHHH--HHhccccccchhHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888886 77788887 5588888888887444 3333331 2234444555555555555555544
No 32
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.97 E-value=2.9e-28 Score=256.69 Aligned_cols=339 Identities=15% Similarity=0.121 Sum_probs=247.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHH
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGN 326 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~ 326 (703)
+.++.++++.++..++.++..+.+|.+.+++|.|..++|++.+++.++..++++++|+++||+|||+++..+.+.. +++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~ 85 (381)
T PRK03633 6 RPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGC 85 (381)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888899999999999999999999999999999999999999999999999999999999999887755 888
Q ss_pred HHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccc
Q 005307 327 TLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKIYK 403 (703)
Q Consensus 327 ~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~ 403 (703)
++++++ ++++.++++|+++|++.+. +...+.+.+..++++|+++++++..+.++|..+||.+++.+ ...+
T Consensus 86 ~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~---- 158 (381)
T PRK03633 86 AGLGLM---VGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM---- 158 (381)
T ss_pred HHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc----
Confidence 889999 9999999999999999877 67777888889999999999999999999999999999988 4332
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccC
Q 005307 404 LTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELD 483 (703)
Q Consensus 404 ~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (703)
+...|..+.+....+.+ ++ .+.+++..++
T Consensus 159 ------~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~------------------------------------------- 187 (381)
T PRK03633 159 ------SVLPWVTGLVLAAILPL-LF-TRILNQQAEN------------------------------------------- 187 (381)
T ss_pred ------chHHHHHHHHHHHHHHH-HH-hcccCCCCCC-------------------------------------------
Confidence 22223333222221111 11 1211110000
Q ss_pred CCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhh
Q 005307 484 NDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVL 563 (703)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~ 563 (703)
. +..+..+..+ ++.++......++..........++|.|.++ .|.++..+|...+...++.+
T Consensus 188 ------------~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~ 249 (381)
T PRK03633 188 ------------H---DSTSIWPMLK--LRQARLGVNGCIISGIVLGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGI 249 (381)
T ss_pred ------------C---CCCCHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence 0 0012233333 5555554444444444555566678888876 58999999998888888888
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccc
Q 005307 564 PVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGT 643 (703)
Q Consensus 564 ~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 643 (703)
+++...+ ++.||+++|+.+..+..+.+++++..... .......++.+++.....|...+.+.+..|++ +++.
T Consensus 250 ~~~~~~g-~l~dr~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~-~~~~ 321 (381)
T PRK03633 250 LGQWPIG-RLADRFGRLLVLRVQVFVVILGSIAMLSQ------AAMAPALFILGAAGFTLYPVAMAWACEKVEHH-ELVA 321 (381)
T ss_pred HHHhhhH-HHHHHcCcHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHH-HHHH
Confidence 8888877 99999999998888877777665433211 12223444455555567788888888888876 5565
Q ss_pred cchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 644 YNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 644 ~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
..+.. .....+|.++||.+.+ +.+..+
T Consensus 322 ~~~~~--~~~~~lG~~igp~~~G~l~~~~g 349 (381)
T PRK03633 322 MNQAL--LLSYTVGSLLGPSFTAMLMQNYS 349 (381)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHhC
Confidence 56665 3367799999999666 434333
No 33
>PRK09952 shikimate transporter; Provisional
Probab=99.97 E-value=5.7e-28 Score=258.47 Aligned_cols=355 Identities=12% Similarity=0.120 Sum_probs=244.8
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhhhccchhHHH-Hhc--CccchhhhHHH-----HHHHHHHHHHhhhhhhhccccCch
Q 005307 242 EQRYHFTSLLLNLVNTFLYMVNTYVIVPTADNYS-LSL--GAAATLCGVII-----GSMAVAQVFSSVYFSAWSNRSYLK 313 (703)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~--g~s~~~~g~i~-----s~~~l~~~i~~~~~G~l~Dr~Grr 313 (703)
...++++.+...+++.+++.++......+.|.+. +++ +.++. .|++. ++..++..+++++.|+++||+|||
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr 94 (438)
T PRK09952 16 SLSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRK 94 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccH
Confidence 3445567777888889999999988877777544 444 66665 46654 345567789999999999999999
Q ss_pred hHHHHHHHHH-HHHHHHHhhcccchhH--------HHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHH
Q 005307 314 PLVFSSIVLL-VGNTLYAMAYDLNSIA--------VLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASA 382 (703)
Q Consensus 314 ~~l~~~~~~~-~~~~~~~~a~~~~~~~--------~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~ 382 (703)
++++.+++.. +++++++++ ++++ .++++|+++|++.|. +....+++|++|+++|++..+....+..
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~ 171 (438)
T PRK09952 95 RMLMLTVWMMGIATALIGLL---PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYG 171 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHH
Confidence 9999998766 999999999 8876 588999999999887 7888999999999999999999999999
Q ss_pred HHHHHHHHhhhhh-c---------ccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccc
Q 005307 383 LGMACGPALACLF-Q---------TNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLL 452 (703)
Q Consensus 383 ~G~~lgp~i~~~l-~---------~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~ 452 (703)
+|.++++.+..++ . +|| |++|++.+++.++. +.....+||+|+....+.+.
T Consensus 172 ~G~~l~~~~~~~l~~~~~~~~~~~~gW----------r~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~~-------- 232 (438)
T PRK09952 172 VGLLLSTGLVSLISMMTTDEQFLSWGW----------RIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHEQ-------- 232 (438)
T ss_pred HHHHHHHHHHHHHHHhCCHHHhhccCh----------HHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhhc--------
Confidence 9999988777655 1 455 99999887765443 23334466766432210000
Q ss_pred cccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHH-HHHHHHHHHHH
Q 005307 453 INCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLF-VYFMLKYAMEI 531 (703)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 531 (703)
. +........+.+++ +++.+...+ ..++..+..+.
T Consensus 233 -------------------------------------~-----~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~ 268 (438)
T PRK09952 233 -------------------------------------A-----AAKKRIPVIEALLR--HPGAFLKIIALRLCELLTMYI 268 (438)
T ss_pred -------------------------------------c-----cccccCCHHHHHHH--chHHHHHHHHHHHHHHHHHHH
Confidence 0 00000011112222 444444433 44455566667
Q ss_pred HHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccc-cccccchhHHH
Q 005307 532 LLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFH-ILVPYSVPQYV 610 (703)
Q Consensus 532 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~ 610 (703)
...+.|.|..+.+|++.........+.+++..++..+.+ +++||+|||+.+..+.++..++.+..+. .......+..+
T Consensus 269 ~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g-~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (438)
T PRK09952 269 VTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFA-WLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVF 347 (438)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 777888898888888877655555555666667777767 9999999999888776655544332211 11112233333
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 611 GSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+..++.+++.+...+...++++|.+|.+ .|++..|..+. ....+|+.++|.+.+
T Consensus 348 ~~~~l~~~~~~~~~~~~~~~~~e~~p~~-~r~tg~g~~~~-~~~~lgg~~~p~i~g 401 (438)
T PRK09952 348 FSIMLANIAHDMVVCVQQPMFTEMFGAS-YRYSGAGVGYQ-VASVVGGGFTPFIAA 401 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCcc-hhHHHHhHHHH-HHHHHHHHHHHHHHH
Confidence 4445556666677778889999999998 78877777532 244578888898655
No 34
>TIGR00895 2A0115 benzoate transport.
Probab=99.97 E-value=1.2e-28 Score=262.07 Aligned_cols=377 Identities=18% Similarity=0.163 Sum_probs=267.6
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 005307 244 RYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL 323 (703)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~ 323 (703)
+.+|+.+...++..+...++.....+..|.+.+++|.++.+.|++.+++.++.+++.++.|+++||+|||+++..+.+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~ 92 (398)
T TIGR00895 13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLF 92 (398)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence 44566667777777777788888888899999999999999999999999999999999999999999999999887655
Q ss_pred -HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccc
Q 005307 324 -VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTN 398 (703)
Q Consensus 324 -~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g 398 (703)
++.+++.++ ++++.++++|++.|++.+. +...+++.|++|+++|++++++...+..+|..+||.+++++ ..|
T Consensus 93 ~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 169 (398)
T TIGR00895 93 SVFTLLCALA---TNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG 169 (398)
T ss_pred HHHHHHHHHc---cchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc
Confidence 888888888 8999999999999999887 88999999999999999999999999999999999999988 678
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcc
Q 005307 399 FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEND 478 (703)
Q Consensus 399 ~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (703)
| +++|++.+++.++..++.+.++||+++...+++ .++.....++ .... ...+.+.
T Consensus 170 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~-----------~~~~~~~ 224 (398)
T TIGR00895 170 W----------RSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKR-PETVRRIVNA---IAPQ-----------MQAEAQS 224 (398)
T ss_pred c----------eeehhhhhhHHHHHHHHHHHhCCCCChHHHhcC-HHHHHHHHHH---HHHh-----------ccccccc
Confidence 7 888888876776666666777888765332211 0000000000 0000 0000000
Q ss_pred ccccCCCCCCCCcccccccCCCcccHHHHHHhh-CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHh
Q 005307 479 DQELDNDDHDEDDEDSKITHRPVTSIMSAYRLL-TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLAC 557 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 557 (703)
+ ..+.+..........+.+++.. .+..+.+.+..++..........+.| ++.+.+|+++.+.+....+
T Consensus 225 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~ 293 (398)
T TIGR00895 225 A----------LPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGAL 293 (398)
T ss_pred c----------ccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHH
Confidence 0 0000000000111122222211 23334444444455555556666667 5556679999999999999
Q ss_pred hhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccC
Q 005307 558 LGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSS 637 (703)
Q Consensus 558 ~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (703)
.+++.+++..+.+ ++.||+++|...........++.++.... .+.+...+..++.+++.+...+...+++++.+|+
T Consensus 294 ~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 369 (398)
T TIGR00895 294 FNFGGVIGSIIFG-WLADRLGPRVTALLLLLGAVFAVLVGSTL---FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPT 369 (398)
T ss_pred HHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHHHHHHHHHh---hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 9999999988888 99999999854443333333332222212 3344555666777888888888999999999999
Q ss_pred CCcccccchhhhHHhhhhhhhhhccceee
Q 005307 638 RLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 638 ~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+ .+|++.|+.+. ...+|.++||.+++
T Consensus 370 ~-~~g~~~g~~~~--~~~~g~~~g~~~~G 395 (398)
T TIGR00895 370 A-IRATGVGWAIG--IGRLGAIIGPILAG 395 (398)
T ss_pred H-HHHHHHHHHHH--HHHHHHHHHHHhHH
Confidence 8 89999998844 77899999998544
No 35
>PRK15075 citrate-proton symporter; Provisional
Probab=99.97 E-value=1.2e-27 Score=256.18 Aligned_cols=363 Identities=13% Similarity=0.112 Sum_probs=240.7
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHH-HHH-----HHHHHHHhhhhhhhccccCchhHHHH
Q 005307 245 YHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVII-GSM-----AVAQVFSSVYFSAWSNRSYLKPLVFS 318 (703)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~-s~~-----~l~~~i~~~~~G~l~Dr~Grr~~l~~ 318 (703)
.+++....++++.++..++...+.+..|.+.++++.++.+.+.+. +.. .++..+++++.|+++||+|||++++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~ 91 (434)
T PRK15075 12 SKARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV 91 (434)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence 356677888899999999999999999999999998887765443 322 22335788999999999999999999
Q ss_pred HHHHH-HHHHHHHhhcccchhH--------HHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHH
Q 005307 319 SIVLL-VGNTLYAMAYDLNSIA--------VLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMAC 387 (703)
Q Consensus 319 ~~~~~-~~~~~~~~a~~~~~~~--------~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~l 387 (703)
+.+.. +++++++++ ++++ .++++|+++|++.|. +...++++|++|+++|++++++...+..+|..+
T Consensus 92 ~~~~~~~~~~l~~~~---~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~ 168 (434)
T PRK15075 92 TLSIMASGTLLIAFV---PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVF 168 (434)
T ss_pred HHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHH
Confidence 97765 999999999 8876 468999999999887 778899999999999999999999998898888
Q ss_pred HHHhhhhh--cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcc
Q 005307 388 GPALACLF--QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPL 465 (703)
Q Consensus 388 gp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (703)
|+.+++.+ ..... .....+||++|++..+...+ ........||++....+
T Consensus 169 g~~~g~~l~~~~~~~--~~~~~gWr~~f~~~~~~~~~-~~~~~~~~~e~~~~~~~------------------------- 220 (434)
T PRK15075 169 AALLGYLLNQWLSPA--QMAEWGWRIPFLIGCLIVPF-IFLIRRSLEETEEFLAR------------------------- 220 (434)
T ss_pred HHHHHHHHHHhCCHH--HHhccchHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHh-------------------------
Confidence 88888775 11000 00112349999875543221 11111222332110000
Q ss_pred cccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHH-HHHHHHHHHHHHHHHhhhhHHhhhhc
Q 005307 466 LLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQ-LFVYFMLKYAMEILLAESSVITEHYF 544 (703)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (703)
. .+......++...+ +++.+.. ++..++..........+.|.|+++.+
T Consensus 221 ------------------------~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~ 269 (434)
T PRK15075 221 ------------------------K-----HRPSMREIFRSLAA--NWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVL 269 (434)
T ss_pred ------------------------h-----hccccccHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 00000111222222 3333332 33334445556667778899998888
Q ss_pred cccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHh-hccccccccchhHHHHHHHHHHhhhhhh
Q 005307 545 IWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGIL-LSFHILVPYSVPQYVGSALITFVAAEVL 623 (703)
Q Consensus 545 g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (703)
|++..+.++...+.+++.+++..+.+ +++||+|+|+.+..+..+..+... .........+.....+...+.+++.+..
T Consensus 270 g~~~~~~~~~~~~~~~~~~~~~~~~g-~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 348 (434)
T PRK15075 270 HLSAADSLLVTLCVGVSNFIWLPIGG-ALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSY 348 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 99999888888888888888888777 999999999987766544332211 1111111122222333334445566666
Q ss_pred hHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 624 EGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
.+....+.++.+|++ .||+..|..++ ....+++.++|.+.+ +.+..+
T Consensus 349 ~~~~~~~~~e~~p~~-~rg~~~g~~~~-~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 349 NGAMVVALTEVMPAE-VRTAGFSLAYS-LATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HhhHHHHHHHHCCCC-ccchheeHHHH-HHHHHHhhhHHHHHHHHHHhcC
Confidence 666778889999999 89988887533 133345667888665 445444
No 36
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.97 E-value=4.4e-28 Score=257.47 Aligned_cols=337 Identities=18% Similarity=0.125 Sum_probs=242.4
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhccchhHHH-HhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 005307 245 YHFTSLLLNLVNTFLYMVNTYVIVPTADNYS-LSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL 323 (703)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~ 323 (703)
..++.+..+.+..++..++.++..|.+|.+. +++|.|+.+.|++.+++.++.+++++++|+++||+|||++++.+.+..
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~ 91 (399)
T PRK05122 12 RLTLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGC 91 (399)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHH
Confidence 3456677788899999999999999999864 679999999999999999999999999999999999999999987644
Q ss_pred -HHHHHHHhhccc-----chhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 324 -VGNTLYAMAYDL-----NSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 324 -~~~~~~~~a~~~-----~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
++.++++++... .+++.++++|+++|++.+. +...+++.|++|+++|++++++...+..+|.++||.+++++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l 171 (399)
T PRK05122 92 ALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLL 171 (399)
T ss_pred HHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence 655555443111 2577899999999999887 77888899999999999999999999999999999999988
Q ss_pred --cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcc
Q 005307 396 --QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQ 473 (703)
Q Consensus 396 --~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (703)
.+|| ++.+++..++.++..+. .++.++....+
T Consensus 172 ~~~~g~----------~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-------------------------------- 205 (399)
T PRK05122 172 YHWGGL----------AGLGLLIMLLALLGLLL----ARPRPAVPPVK-------------------------------- 205 (399)
T ss_pred HHcccH----------HHHHHHHHHHHHHHHHH----HhcCCCCCCCC--------------------------------
Confidence 6787 78777766554433222 12111110000
Q ss_pred cCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHH
Q 005307 474 KDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAI 553 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 553 (703)
. +..++++..+ +.+.......+..++......+.+.|+.+ .|+ ...+.
T Consensus 206 ----------------~---------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~ 253 (399)
T PRK05122 206 ----------------G---------ERLPFRRVLG----RVWPYGMGLALASIGFGTIATFITLYYAA-RGW--DGAAL 253 (399)
T ss_pred ----------------c---------cchhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc--ccchH
Confidence 0 0001222111 12222222233344445555666777654 355 34556
Q ss_pred HHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 005307 554 FLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSR 633 (703)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (703)
.....+++.+++..+.+ ++.||+++|+.+..+..+.++++++.... .+.+..++..++.+++.+...+.......+
T Consensus 254 ~~~~~~~~~~~~~~~~g-~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 254 ALTLFGVAFVGARLLFG-NLINRLGGLRVAIVSLLVEILGLLLLWLA---PSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66677777777777777 99999999998888877777765544333 334455566777788888778877778888
Q ss_pred hccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 634 VMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 634 ~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
..|++ .+|++.|+++. ...+|..++|.+.+
T Consensus 330 ~~~~~-~~g~~~g~~~~--~~~~g~~~~~~~~g 359 (399)
T PRK05122 330 RVPPQ-NRGAALGAYSV--FLDLSLGITGPLAG 359 (399)
T ss_pred hCCHH-HHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 88888 89999998743 66788888887555
No 37
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.97 E-value=8.1e-28 Score=259.53 Aligned_cols=355 Identities=14% Similarity=0.074 Sum_probs=242.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-V 324 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~ 324 (703)
+++.+.....+.++...+.....+.+|.+.+++|.+..+.|++.+++.++..+++++.|+++||+|||+++..+.+.. +
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~ 113 (476)
T PLN00028 34 HMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAP 113 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 345555555666666666777778899999999999999999999999999999999999999999999988887655 8
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-----ccc
Q 005307 325 GNTLYAMAYDLNSIAVLLIGRLFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-----QTN 398 (703)
Q Consensus 325 ~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-----~~g 398 (703)
+.++++++ ++++.++++|++.|++.+. .....+++|++|+++|++++|+......+|..+++.+.+.+ ..+
T Consensus 114 ~~~~~~~~---~s~~~l~~~r~l~G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 190 (476)
T PLN00028 114 AVFCMSLV---SSATGFIAVRFFIGFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG 190 (476)
T ss_pred HHHHHHHh---cCHHHHHHHHHHHHHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 88888899 8999999999999999877 55667899999999999999999877777777776655443 110
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcc
Q 005307 399 FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEND 478 (703)
Q Consensus 399 ~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (703)
. ....+||++|++.+++.++..++.+++.++.|..... +. +
T Consensus 191 ~----~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~-----~~----------------------------~-- 231 (476)
T PLN00028 191 A----PSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGNYR-----EL----------------------------K-- 231 (476)
T ss_pred C----cchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCchh-----hH----------------------------H--
Confidence 0 0011349999999988877766665544443321100 00 0
Q ss_pred ccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhh
Q 005307 479 DQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACL 558 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~ 558 (703)
+ .. . ..+......+++..+ +++++.+.+..++.......+..+.|.|+.+.+|+++.+++.+.++.
T Consensus 232 ~----------~~-~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~ 297 (476)
T PLN00028 232 K----------SG-T-MPKDSFSKVLRYGVT--NYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASF 297 (476)
T ss_pred h----------cC-c-cccccHHHHHHHHHc--CchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 0 00 0 000000011222222 67777766666655555556667788898888899999999999999
Q ss_pred hhhhhhHHHHHHhhhhhhhhhHH-------HHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHH
Q 005307 559 GLTVLPVNIIVGNYISNIFEERQ-------VLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLL 631 (703)
Q Consensus 559 ~~~~~~~~~~~~~~l~~r~g~r~-------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (703)
+++..++.++.| +++||+++|. ...+...+.+++++++ .. ..+.+..++.+++++++.+...+..+++.
T Consensus 298 ~~~~~ig~~~~G-~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~-~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 373 (476)
T PLN00028 298 GLMNLFARPAGG-YLSDVAARRFGMRGRLWALWIVQTLGGVFCIWL-GR--ANSLGAAIVVMILFSIFVQAACGATFGIV 373 (476)
T ss_pred HHHHHHHHhhhH-HHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHh-cc--cchHHHHHHHHHHHHHHHHHhhhhhcccC
Confidence 999999998877 9999998752 2222222222322222 22 12333344444555555555555566666
Q ss_pred HhhccCCCcccccchhhhHHhhhhhhhhhccce
Q 005307 632 SRVMSSRLSRGTYNGGLLSTEAGTLARVIADGT 664 (703)
Q Consensus 632 ~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~ 664 (703)
.+..| + .+|++.|+. ...+.+|.+++|.+
T Consensus 374 ~~~~~-~-~~g~~~g~~--~~~g~lg~~i~~~l 402 (476)
T PLN00028 374 PFVSR-R-SLGVISGLT--GAGGNVGAVLTQLL 402 (476)
T ss_pred cccCh-h-hchhhhhhh--hccccHHHHHHHHH
Confidence 66555 4 588888887 33666777777773
No 38
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.97 E-value=9.9e-28 Score=255.87 Aligned_cols=341 Identities=14% Similarity=0.117 Sum_probs=254.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchh-----hhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATL-----CGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL 322 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~-----~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~ 322 (703)
+....++++.++..++.++..+.+|.+.+++|.+..+ .|++.+++.++..++.+++|+++||+|||++++.+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~ 93 (408)
T PRK09874 14 RNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALG 93 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHH
Confidence 3455667788888899999999999999999888554 58999999999999999999999999999999888665
Q ss_pred H-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccc
Q 005307 323 L-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTN 398 (703)
Q Consensus 323 ~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g 398 (703)
. ++.++++++ ++++.++++|++.|++.+. +...+++.+.+|+++|++++++...+..+|.++||.+++.+ ..+
T Consensus 94 ~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 170 (408)
T PRK09874 94 MGIVMVLMGLA---QNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG 170 (408)
T ss_pred HHHHHHHHHHH---hhHHHHHHHHHHHHHhhhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5 787888888 8999999999999998777 77888899999999999999999999999999999999988 578
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcc
Q 005307 399 FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEND 478 (703)
Q Consensus 399 ~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (703)
| +++|++.+++.++..+..++++||++.+..++
T Consensus 171 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 203 (408)
T PRK09874 171 L----------RPVFFITASVLFLCFLVTLFCIRENFQPVSKK------------------------------------- 203 (408)
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHHhccCcccccch-------------------------------------
Confidence 7 99999998888777776667677654321110
Q ss_pred ccccCCCCCCCCcccccccCCCcccHHHHHHh-hCcchHHH-HHHHHHHHHHHHHHHhhhhHHhhhhccccch---hHHH
Q 005307 479 DQELDNDDHDEDDEDSKITHRPVTSIMSAYRL-LTPSVKVQ-LFVYFMLKYAMEILLAESSVITEHYFIWSTS---RVAI 553 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~~g~ 553 (703)
. ....++..+. .+++++.. ....++..........+++.|..+..+.... ..+.
T Consensus 204 -----------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 262 (408)
T PRK09874 204 -----------------E----MLHMREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGM 262 (408)
T ss_pred -----------------h----hhHHHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 0 0001111111 14444432 2333333444445556677777664332221 2345
Q ss_pred HHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 005307 554 FLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSR 633 (703)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (703)
+..+.+++.+++....+ ++.||+++|+.+..+..+.+++++..... .+.+...+..++.+++.+...+...+.+.+
T Consensus 263 ~~~~~~l~~~~~~~~~g-~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 263 IASVPGVAALLSAPRLG-KLGDRIGPEKILITALIFSVLLLIPMSFV---QTPLQLGILRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhccccchhHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 55566677777777767 99999999999888877766664433222 334555566677788888888888888888
Q ss_pred hccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 634 VMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 634 ~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
..|++ .+|+..|... ....+|..+||.+++
T Consensus 339 ~~~~~-~~g~~~~~~~--~~~~~g~~~gp~~~G 368 (408)
T PRK09874 339 NSSNQ-IAGRIFSYNQ--SFRDIGNVTGPLMGA 368 (408)
T ss_pred hCCcc-cceeeehHHH--HHHHHHHHhhHHHHH
Confidence 88888 8899999874 377899999999666
No 39
>PRK10054 putative transporter; Provisional
Probab=99.97 E-value=4.9e-28 Score=255.30 Aligned_cols=346 Identities=15% Similarity=0.134 Sum_probs=262.3
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHH-HhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYS-LSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGN 326 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~ 326 (703)
.++.+.++.++...+.+...|.+|.+. +++|.+..++|++.+++.++..+++++.|+++||+|||++++++.+.. ++.
T Consensus 8 ~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~ 87 (395)
T PRK10054 8 STSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGF 87 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHH
Confidence 355667788888899999999988776 468999999999999999999999999999999999999998887655 888
Q ss_pred HHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccc
Q 005307 327 TLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKIYK 403 (703)
Q Consensus 327 ~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~ 403 (703)
++++++ ++++.++++|++.|.+.+. ++..++++|.+|+++|++++|+.....++|.++||++++++ ..+|
T Consensus 88 ~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~---- 160 (395)
T PRK10054 88 IAIPLV---NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSI---- 160 (395)
T ss_pred HHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 888888 8999999999888877555 77889999999999999999999999999999999999998 7787
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccC
Q 005307 404 LTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELD 483 (703)
Q Consensus 404 ~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (703)
+.+|++.+++.++.+++..+.+|+++++.++.
T Consensus 161 ------~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~------------------------------------------ 192 (395)
T PRK10054 161 ------NLPFWLAAICSAFPLVFIQIWVQRSEKAIATE------------------------------------------ 192 (395)
T ss_pred ------CcHHHHHHHHHHHHHHHHHHHHhccccccccc------------------------------------------
Confidence 89999888887777666656566553221100
Q ss_pred CCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhh--ccccchhHHHHHHhhhhh
Q 005307 484 NDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHY--FIWSTSRVAIFLACLGLT 561 (703)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~~~ 561 (703)
. . .....+...+ +|+++...+..++..+....+..+.+.|.... .+.+....+.++.+.++.
T Consensus 193 ------~-----~---~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 256 (395)
T PRK10054 193 ------T-----G---SVWSPSVLLQ--DKALLWFTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAM 256 (395)
T ss_pred ------h-----h---hhhhhhhhcc--CceehHHHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhh
Confidence 0 0 0000122222 67777776666666666555555566665432 355566677788877777
Q ss_pred hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcc
Q 005307 562 VLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSR 641 (703)
Q Consensus 562 ~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (703)
..+.....+ ++.||.++|+.+..++.+.+++++..... ..+.+.+.+..++.+++.+...|...+++.+..|++ .+
T Consensus 257 ~~~~~~~~g-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~p~~-~~ 332 (395)
T PRK10054 257 VVSLQYSVG-RRLNAANIRPLMTAGTLCFVIGLVGFIFS--GNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPG-MK 332 (395)
T ss_pred eeeehhHHH-HHHccCCchhHHHHHHHHHHHHHHHHHHc--chHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCcc-cc
Confidence 777777777 88999999999888887777775443322 134445556667778887777788888999999988 88
Q ss_pred cccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 642 GTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 642 g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
|++.+.. + ...+|..+||.+++ +.+..+
T Consensus 333 ~~~~~~~--~-~~~~G~~~Gp~~~G~l~~~~g 361 (395)
T PRK10054 333 ASYFSAQ--S-LGWLGAAINPLVSGVILTTLP 361 (395)
T ss_pred eehHhHH--H-HHHHHHHHHHHHHHHHHHHcC
Confidence 8887754 2 55589999999777 556555
No 40
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.97 E-value=9.1e-28 Score=253.14 Aligned_cols=339 Identities=14% Similarity=0.144 Sum_probs=249.1
Q ss_pred HHHHHHHHHhhhhhccchhHHH-HhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHH-HHHHHH-HHHHHHH
Q 005307 254 LVNTFLYMVNTYVIVPTADNYS-LSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVF-SSIVLL-VGNTLYA 330 (703)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~-~~~~~~-~~~~~~~ 330 (703)
.+..++..++.++..|.+|.+. +++|.|+.+.|++.+++.++..+.+++.|+++||+|||+.++ .+.+.. ++.++++
T Consensus 3 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 82 (375)
T TIGR00899 3 LLVAFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA 82 (375)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH
Confidence 3557788888999999999875 579999999999999999999999999999999999887654 455554 6778888
Q ss_pred hhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhH--HHHHHHHHHHHHHHHHHhhhhh--ccccccccc
Q 005307 331 MAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRA--SAGFVSASALGMACGPALACLF--QTNFKIYKL 404 (703)
Q Consensus 331 ~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~--~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~ 404 (703)
++ ++++.+++.|++.|.+.+. |...+++.|+.|++.|+++ .+....+.++|.++||++++++ .+||
T Consensus 83 ~~---~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~----- 154 (375)
T TIGR00899 83 WN---RNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGF----- 154 (375)
T ss_pred hc---chHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhccc-----
Confidence 88 9999999999998877665 7788888898887777654 5788888899999999999988 6787
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCC
Q 005307 405 TFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDN 484 (703)
Q Consensus 405 ~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (703)
|++|++.+++.++..++.++++||+|+....+
T Consensus 155 -----~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------- 186 (375)
T TIGR00899 155 -----TVMFLTAALAFVLCGVLVWLFLPSYPRGAPGA------------------------------------------- 186 (375)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhCCCcccCcccc-------------------------------------------
Confidence 99999999887777777677788765422110
Q ss_pred CCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhh
Q 005307 485 DDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLP 564 (703)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~ 564 (703)
. ...+.++..+ +++++......++...........+|.|+.+.+|.++.+.|.......+...+
T Consensus 187 -----~---------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 250 (375)
T TIGR00899 187 -----L---------TRLEVRGLLA--SRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIP 250 (375)
T ss_pred -----c---------Ccchhhhhhc--CcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 0 0001111222 45555554444444444455556678888888899999999887776666666
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCccccc
Q 005307 565 VNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTY 644 (703)
Q Consensus 565 ~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 644 (703)
+..+.+ ++.||+++|+.+.++..+..++++..... .+.+..++..++.+++.+...+....+.++..|++ ++++
T Consensus 251 ~~~~~g-~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~--~~~~ 324 (375)
T TIGR00899 251 FMLLAG-YLIKRFGKRRLMLLAALAGVAFYTGLAAD---NSLWALLMLQLLNAIFIGILAGIGMLYFQDLMPGR--AGAA 324 (375)
T ss_pred HHHhHH-HHHHHhcchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcch--hhHH
Confidence 666666 99999999998877766555443322222 33444555556667777777778888888888766 6677
Q ss_pred chhhhHHhhhhhhhhhccceee-eecccc
Q 005307 645 NGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 645 ~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
.|..+ ....+|..++|.+.+ +.+..+
T Consensus 325 ~~~~~--~~~~~g~~~g~~~~g~~~~~~g 351 (375)
T TIGR00899 325 TTLYT--NTGRVGWIIAGSVGGILAERWS 351 (375)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHhcc
Confidence 88874 366799999999666 344333
No 41
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.97 E-value=7.6e-28 Score=254.02 Aligned_cols=326 Identities=15% Similarity=0.064 Sum_probs=242.5
Q ss_pred hhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHH
Q 005307 264 TYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLL 342 (703)
Q Consensus 264 ~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~ 342 (703)
.....+.+|.+.+++|.|..+.|++.+++.++..+++++.|+++||+|||+++..+++.. ++.++++++ ++++.++
T Consensus 25 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a---~~~~~ll 101 (393)
T PRK09705 25 LTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY---PQSALLL 101 (393)
T ss_pred hhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC---cchHHHH
Confidence 356678999999999999999999999999999999999999999999999999998766 999999999 9999999
Q ss_pred HHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--c-ccccccccccccchhHHHHHH
Q 005307 343 IGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--Q-TNFKIYKLTFNEDTLPGWVMA 417 (703)
Q Consensus 343 i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~-~g~~~~~~~~~~~~~~f~i~~ 417 (703)
++|+++|++.+. +...+++.+++| ++|+++++.+..+..+|..+|+.+++++ . .+| |+.+.+.+
T Consensus 102 ~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w----------~~~~~~~~ 170 (393)
T PRK09705 102 SSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETW----------YQTLAWWA 170 (393)
T ss_pred HHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH----------HHHHHHHH
Confidence 999999999887 777888899887 7899999999999999999999999988 3 367 77776655
Q ss_pred HHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCccccccc
Q 005307 418 LLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKIT 497 (703)
Q Consensus 418 ~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (703)
+..++.++..+...++.|+... . .+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------------~-----~~ 195 (393)
T PRK09705 171 LPAVVALFAWWWQSAREVASSH--------------------------------------------------K-----TT 195 (393)
T ss_pred HHHHHHHHHHHHHhcCCCcccc--------------------------------------------------C-----CC
Confidence 5544333222221111111000 0 00
Q ss_pred CCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhh
Q 005307 498 HRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIF 577 (703)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~ 577 (703)
.. . .+.. ++++.+...+..++...++.....+.|.|+.+ +|++..++|...++.+++.+++..+.+ ++.||+
T Consensus 196 ~~---~-~~~l--~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g~s~~~ag~~~~~~~i~~i~g~~~~g-~l~~r~ 267 (393)
T PRK09705 196 TT---P-VRVV--FTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IGASAQYSGSLLALMTLGQAAGALLMP-AMARHQ 267 (393)
T ss_pred cC---C-cccc--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhhhhHHHHHHHHHHHHHHHHHH-HHHhhc
Confidence 00 0 0111 15556666666666667777788889999886 799999999999999999999998877 999999
Q ss_pred hhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhh
Q 005307 578 EERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLA 657 (703)
Q Consensus 578 g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g 657 (703)
++|+.+..+..+.++++++..... .+... +..++.+++.+...+.......+..+++..+|+..|..++ .+.++
T Consensus 268 ~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~--~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~--~~~~~ 341 (393)
T PRK09705 268 DRRKLLMLALVLQLVGFCGFIWLP--LQLPV--LWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQG--IGFII 341 (393)
T ss_pred cchHHHHHHHHHHHHHHHHHHHcc--chHHH--HHHHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHH--HHHHH
Confidence 999988888777766654332221 11111 1233456666666776666666776542267888888744 77788
Q ss_pred hhhccceee-eecccc
Q 005307 658 RVIADGTIT-LSGYLG 672 (703)
Q Consensus 658 ~~~gp~~~~-~~~~~~ 672 (703)
..++|.+.+ +.+..+
T Consensus 342 ~~~gp~~~G~l~~~~g 357 (393)
T PRK09705 342 AGLAPWFSGVLRSISG 357 (393)
T ss_pred HHHHHHHHHHHHHHhC
Confidence 899999666 445444
No 42
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.96 E-value=4.1e-27 Score=249.52 Aligned_cols=345 Identities=13% Similarity=0.074 Sum_probs=255.3
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-V 324 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~ 324 (703)
.++.+.+..+..++..+......|.+|.+.+++|.++.+.+++.+++.++..++.+++|+++||+|||++++.+.+.. +
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~ 85 (394)
T PRK11652 6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFIL 85 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHH
Confidence 566677777777777888888999999999999999999999999999999999999999999999999999887655 8
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccccc
Q 005307 325 GNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFK 400 (703)
Q Consensus 325 ~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~ 400 (703)
+.+++.++ ++++.+++.|++.|++.+. +....++.|.++++++++++++.+.+..+|..+||.+++++ ..||
T Consensus 86 ~~~~~~~~---~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~- 161 (394)
T PRK11652 86 GTLVALFA---HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGW- 161 (394)
T ss_pred HHHHHHHH---ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh-
Confidence 88888888 9999999999999999877 77778889999999999999999999999999999999988 5687
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcccc
Q 005307 401 IYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQ 480 (703)
Q Consensus 401 ~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (703)
|++|++.+++.++..++..++.||+++...+
T Consensus 162 ---------~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 192 (394)
T PRK11652 162 ---------RACYLFLLLLGAGVTFSMARWMPETRPADAR---------------------------------------- 192 (394)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHhCCccCccccc----------------------------------------
Confidence 9999998877776665555667776432110
Q ss_pred ccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhh
Q 005307 481 ELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGL 560 (703)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~ 560 (703)
+ ......++...+ ++.++...+..+........+....+.++.+.+|+++.+.|+......+
T Consensus 193 ---------------~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 254 (394)
T PRK11652 193 ---------------R-TRVLASYRTLLS--NRRFNCYLLMLIGTLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIP 254 (394)
T ss_pred ---------------h-hHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHH
Confidence 0 001112333333 5666555554444444555556667778888889999999988877777
Q ss_pred hhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCc
Q 005307 561 TVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLS 640 (703)
Q Consensus 561 ~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (703)
+.++++.+.+ ++.||.+++........+....+.+........+.+...+..++.+++.+...|...+...+..|++
T Consensus 255 ~~~~g~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-- 331 (394)
T PRK11652 255 AAFFGAWFAG-RPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPYL-- 331 (394)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--
Confidence 7777776666 8888887433322222111111111111101123445556667778888888889999888888754
Q ss_pred ccccchhhhHHhhhhhhhhhccceee
Q 005307 641 RGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 641 ~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+|+..++.+. ...+|..+++.+++
T Consensus 332 ~g~~~~~~~~--~~~lg~~~~~~~~~ 355 (394)
T PRK11652 332 AGTAGALLGG--LQNIGSGLAALLSA 355 (394)
T ss_pred chHHHHHHHH--HHHHHHHHHHHHHH
Confidence 7887777743 66788889988444
No 43
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.96 E-value=1.7e-27 Score=256.30 Aligned_cols=372 Identities=12% Similarity=0.073 Sum_probs=241.9
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-
Q 005307 245 YHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL- 323 (703)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~- 323 (703)
..|..+..+++......+......+.+|.+.++ |.++.+.|++.+++.++.+++++++|+++||+|||++++++.+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~ 104 (452)
T PRK11273 26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAA 104 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHH
Confidence 344444444444444444444455677877777 999999999999999999999999999999999999999887655
Q ss_pred HHHHHHHhhcc-cchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHH-HHHHHhhhhh--cc
Q 005307 324 VGNTLYAMAYD-LNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGM-ACGPALACLF--QT 397 (703)
Q Consensus 324 ~~~~~~~~a~~-~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~-~lgp~i~~~l--~~ 397 (703)
++.++++++.. ..+++.+++.|++.|++.|. +.....+.+++|+++|++++|+++.+.++|. +.+|+++..+ ..
T Consensus 105 i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 184 (452)
T PRK11273 105 AVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFN 184 (452)
T ss_pred HHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 77777776511 13788899999999999876 6677888999999999999999999999986 4566654444 44
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCc
Q 005307 398 NFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEN 477 (703)
Q Consensus 398 g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (703)
|| |++|++.+++.++..++.++++||+++.....++ ++. +++.
T Consensus 185 gw----------~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~--------------------------~~~~ 227 (452)
T PRK11273 185 DW----------HAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEY--------------------------KNDY 227 (452)
T ss_pred cH----------HHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhh--------------------------hhcc
Confidence 76 9999999888877777777778887653211000 000 0000
Q ss_pred cccccCCCCCCCCcccccccCCCcccHHHHH---HhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHH
Q 005307 478 DDQELDNDDHDEDDEDSKITHRPVTSIMSAY---RLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIF 554 (703)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~ 554 (703)
.+ ....+.. ...+.++.. ...++.++...+..++.....+....++|.|+++..|++..+++..
T Consensus 228 ~~----------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~ 294 (452)
T PRK11273 228 PD----------DYNEKHE---QELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWA 294 (452)
T ss_pred cc----------ccccccC---CCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 00 0000000 001122211 1127778887777777777777788899999998889999999988
Q ss_pred HHhhhhhhhhHHHHHHhhhhhhh--hhHHHH-HHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHH
Q 005307 555 LACLGLTVLPVNIIVGNYISNIF--EERQVL-LASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLL 631 (703)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~l~~r~--g~r~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 631 (703)
..+.+++.+++..+.+ +++||+ +||... .....+..++.++.... ...+.+..++..++.+.+..........+.
T Consensus 295 ~~~~~~~~~~g~~~~G-~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 372 (452)
T PRK11273 295 YFLYEYAGIPGTLLCG-WMSDKVFRGNRGATGVFFMTLVTIATIVYWLN-PAGNPTVDMACMIVIGFLIYGPVMLIGLHA 372 (452)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHccCCcchHHHHHHHHHHHHHHHHHHh-cccChHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 8888888888888877 999998 444332 22222223332221111 112222222333333332222222333456
Q ss_pred HhhccCCCcccccchhhhHHhhhhhhhh-hccceee-eecccc
Q 005307 632 SRVMSSRLSRGTYNGGLLSTEAGTLARV-IADGTIT-LSGYLG 672 (703)
Q Consensus 632 ~~~~~~~~~~g~~~g~~~~~~~~~~g~~-~gp~~~~-~~~~~~ 672 (703)
.+..|++ .+|++.|..+. ...+|+. ++|.+.+ +.+..+
T Consensus 373 ~~~~p~~-~~g~~~g~~~~--~~~~g~~~~g~~v~g~l~~~~g 412 (452)
T PRK11273 373 LELAPKK-AAGTAAGFTGL--FGYLGGSVAASAIVGYTVDFFG 412 (452)
T ss_pred HHHcChh-hhhhHHHHHHH--HHHHHHHHhhhhhHHHHHHHhc
Confidence 7889988 89999998743 5556654 4788555 444444
No 44
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.96 E-value=3.8e-27 Score=249.91 Aligned_cols=341 Identities=15% Similarity=0.096 Sum_probs=244.6
Q ss_pred HHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHh
Q 005307 253 NLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAM 331 (703)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~ 331 (703)
+.+..++..++..+..|.+|.+.+++|.+....++..+++.++.+++++++|+++||+|||++++.+.+.. ++++++++
T Consensus 21 ~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~ 100 (413)
T PRK15403 21 LILYDFAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF 100 (413)
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 34455566678899999999999999999999999999999999999999999999999999999987765 89999999
Q ss_pred hcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccc
Q 005307 332 AYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFN 407 (703)
Q Consensus 332 a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~ 407 (703)
+ ++++.++++|+++|++.+. +...+++.|++|+++|+++++++..+..+|.++||++++.+ .+||
T Consensus 101 a---~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw-------- 169 (413)
T PRK15403 101 T---TSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHW-------- 169 (413)
T ss_pred c---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--------
Confidence 9 9999999999999999876 56678899999999999999999999999999999999988 5687
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCC
Q 005307 408 EDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDH 487 (703)
Q Consensus 408 ~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (703)
|+.|++.+++.++..+..++.+||+++..++.
T Consensus 170 --~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~---------------------------------------------- 201 (413)
T PRK15403 170 --KVLFAIIAVMGLIAFVGLLLAMPETVKRGAVP---------------------------------------------- 201 (413)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhCCCCccccCCC----------------------------------------------
Confidence 99999999888877766666678764321100
Q ss_pred CCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHH
Q 005307 488 DEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNI 567 (703)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 567 (703)
. ........++.+.+ +|.++...+..++.......+....|.++++.+|+++.+.++.......+..++..
T Consensus 202 --~-----~~~~~~~~~~~ll~--~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~ 272 (413)
T PRK15403 202 --F-----SAKSVLRDFRNVFR--NRLFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANA 272 (413)
T ss_pred --C-----ChHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000112333333 78888877777777777777777889999998999999999988777777777777
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHhhcccc--ccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccc
Q 005307 568 IVGNYISNIFEERQVLLASEIIVCIGILLSFHI--LVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYN 645 (703)
Q Consensus 568 ~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 645 (703)
+.+.++.|+.++|. ...+..+..++.+++... .....++..++..+++++|.+...|...+..- .+....+|++.
T Consensus 273 l~~~~~~~~~~~~~-~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~p~~~~~al--~~~~~~~G~a~ 349 (413)
T PRK15403 273 IVARFVKDPTEPRF-IWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGLIFPTLFRFTL--FSNNLPKGTVS 349 (413)
T ss_pred HHHHHhccCCchhH-HHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHhHHHHHHHh--ccCCCCCcHHH
Confidence 77733445554443 222222222222211100 00223333456667777777777766664322 22222467777
Q ss_pred hhhhHHhhhhhhhhhccceee
Q 005307 646 GGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 646 g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+..+. ....+..+++...+
T Consensus 350 a~~~~--~~~~~~~~~~~~~g 368 (413)
T PRK15403 350 ASLNM--VILMVMAVSVEIGR 368 (413)
T ss_pred HHHHH--HHHHHHHHHHHHHH
Confidence 76633 44455566665333
No 45
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.96 E-value=1.1e-27 Score=259.46 Aligned_cols=367 Identities=13% Similarity=0.068 Sum_probs=255.6
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhHHHH----------------------hcCccchhhhHHHHHHHHHHHHHhh
Q 005307 244 RYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSL----------------------SLGAAATLCGVIIGSMAVAQVFSSV 301 (703)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~g~s~~~~g~i~s~~~l~~~i~~~ 301 (703)
+.+|....+++++..+...+........+.+.+ +++.+..+.|++.+++.++++++++
T Consensus 15 ~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~ 94 (465)
T TIGR00894 15 SFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQIIIQI 94 (465)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHHHHc
Confidence 456777777777777778887777777666655 7899999999999999999999999
Q ss_pred hhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHH
Q 005307 302 YFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFV 378 (703)
Q Consensus 302 ~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~ 378 (703)
++|+++||+|||+++.++.++. ++.+++.++. ..+++.+++.|+++|++.+. +....+++|++|+++|++++++..
T Consensus 95 ~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 173 (465)
T TIGR00894 95 PVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-GGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMST 173 (465)
T ss_pred chHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-HcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999887654 6666664430 05688899999999999887 889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhh--c-ccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCcccccccccccccccccccc
Q 005307 379 SASALGMACGPALACLF--Q-TNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINC 455 (703)
Q Consensus 379 ~~~~~G~~lgp~i~~~l--~-~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~ 455 (703)
.+..+|.++||++++.+ . .|| |++|++.++++++..++.+.+.+|+|+......+.++.
T Consensus 174 ~~~~~g~~i~~~l~~~l~~~~~gw----------~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-------- 235 (465)
T TIGR00894 174 SGFQLGTFIFLPISGWLCESWGGW----------PMIFYVFGIVGCAWSLLWFVFPADDPSIHPCISKFEKK-------- 235 (465)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC----------CeehhhhhHHHHHHHHHHHHHhcCCcccCCCCCHHHHH--------
Confidence 99999999999999988 5 387 99999999888777766666667766432210000000
Q ss_pred ccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhh
Q 005307 456 TVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAE 535 (703)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (703)
.. ++..+ .+ ........+++++.+ ++.++...+..++.....+.+.++
T Consensus 236 ~i-----------------~~~~~----------~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 283 (465)
T TIGR00894 236 YI-----------------NSSLQ----------GQ---KGSTRQSLPIKAIPK--SLPVWAIWFAIFGHFWLYTILPTY 283 (465)
T ss_pred HH-----------------Hhhcc----------cc---cCCCCCCCCHHHHhc--CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000 00 000111234666555 788888888888888888888899
Q ss_pred hhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHH--------HHHHHHHHHHHHhhccccccccchh
Q 005307 536 SSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQV--------LLASEIIVCIGILLSFHILVPYSVP 607 (703)
Q Consensus 536 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~--------~~~~~~~~~i~~~~~~~~~~~~~~~ 607 (703)
+|.|+.+.+|++..+.|+..++..++..++..+.| +++||+++|+. +..+..+...+..+........+..
T Consensus 284 lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (465)
T TIGR00894 284 LPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAG-YLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFY 362 (465)
T ss_pred HHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchH
Confidence 99999999999999999999888888888888877 99998765421 1111111111111111110012223
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 608 QYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
..++...+.+.+.+...+.......+..|. ..|.+.|+. +..+.+|.+++|.+.+
T Consensus 363 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~--~~~~~l~~~i~p~l~g 417 (465)
T TIGR00894 363 LTIIILTLANAVSSGPLAGVLINSLDLAPR--FLGFIKGIT--GLPGFIGGLIASTLAG 417 (465)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhchhhcChh--HHHHHHHHH--HHHHHHHHHHHHHhhh
Confidence 333333333333333334444445555554 478888887 4477788888888544
No 46
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.96 E-value=4.6e-28 Score=255.76 Aligned_cols=359 Identities=12% Similarity=0.069 Sum_probs=254.8
Q ss_pred HHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhccc
Q 005307 257 TFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDL 335 (703)
Q Consensus 257 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~ 335 (703)
.++..++.....+.+|.+.+++|.+..+.|++.+++.++.+++.+++|+++||+|||++++.+.++. ++.++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--- 80 (379)
T TIGR00881 4 YAAYYLVRKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS--- 80 (379)
T ss_pred hhHHHHhHHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh---
Confidence 4455667777778889999999999999999999999999999999999999999999999987655 899999999
Q ss_pred chhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHH-Hhhhhh--cccccccccccccch
Q 005307 336 NSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGP-ALACLF--QTNFKIYKLTFNEDT 410 (703)
Q Consensus 336 ~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp-~i~~~l--~~g~~~~~~~~~~~~ 410 (703)
++++.++++|++.|++.+. +...+++.|++|+++|++++++.+.+..+|.+++| ++++.+ ..+| +
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~----------~ 150 (379)
T TIGR00881 81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSW----------H 150 (379)
T ss_pred hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCc----------h
Confidence 9999999999999999887 88999999999999999999999999999999999 466656 6677 8
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCC
Q 005307 411 LPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDED 490 (703)
Q Consensus 411 ~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (703)
+.|++.+++.++..++.+++.||+++.......+++. .++.++ + .
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~----~----~ 195 (379)
T TIGR00881 151 WVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMP---------------------------NEEPDG----D----A 195 (379)
T ss_pred hHHHHHHHHHHHHHHHHheeeCCCccccccCccccCc---------------------------cccccc----c----c
Confidence 9999888887777666666677765432210000000 000000 0 0
Q ss_pred cccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHH
Q 005307 491 DEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVG 570 (703)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~ 570 (703)
+..+..........+.+.+ ++.++...+..++.......+..+.|.|+.+.+|+++.+.+...++.+++.+++..+.+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g 273 (379)
T TIGR00881 196 EKKEEELTKKQIFLQYVLL--NKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAG 273 (379)
T ss_pred ccccccccchHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHH
Confidence 0000000001112233333 77788777777877777778888899999888999999999999999999989988877
Q ss_pred hhhhhhhhh-HHH-HHHH-HHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchh
Q 005307 571 NYISNIFEE-RQV-LLAS-EIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGG 647 (703)
Q Consensus 571 ~~l~~r~g~-r~~-~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 647 (703)
++.||..+ ++. +... .....+++....... ..+.+...+..++.++......+....+..+..|++ .+|++.|+
T Consensus 274 -~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~ 350 (379)
T TIGR00881 274 -WLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNP-AANPLMDLICLFALGFLVYGPQMLIGVIASELAPKK-AAGTAAGF 350 (379)
T ss_pred -HHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCc-chhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcc-hhHHHHHH
Confidence 99998633 322 2211 122222222211110 122333333444444444444455567888999988 89999999
Q ss_pred hhHHhhhhhhhhhccceee-eecc
Q 005307 648 LLSTEAGTLARVIADGTIT-LSGY 670 (703)
Q Consensus 648 ~~~~~~~~~g~~~gp~~~~-~~~~ 670 (703)
.+ ....+|..++|.+.+ +.+.
T Consensus 351 ~~--~~~~~g~~~~~~~~g~l~~~ 372 (379)
T TIGR00881 351 VG--FFAYLGGILAGLPLGYLADG 372 (379)
T ss_pred HH--HhhhhhhhhhhhhHHHHHHh
Confidence 84 477899999998665 4443
No 47
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.96 E-value=5.6e-27 Score=248.52 Aligned_cols=356 Identities=12% Similarity=0.052 Sum_probs=249.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HH
Q 005307 247 FTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VG 325 (703)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~ 325 (703)
++.+....++.++..++.+...+.++.+.+++|.++.+.|++.+.+.++..++.+++|+++||+|||+++..+.+.. ++
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~ 91 (402)
T TIGR00897 12 PLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVG 91 (402)
T ss_pred CchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 45677788888888888888888889999999999999999999999999999999999999999999998887654 66
Q ss_pred HHHHHh-hcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHH-HHHHHhhhhh--cccc
Q 005307 326 NTLYAM-AYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGM-ACGPALACLF--QTNF 399 (703)
Q Consensus 326 ~~~~~~-a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~-~lgp~i~~~l--~~g~ 399 (703)
++++.+ ....++++.+++.|++.|++.+. +...+++.+.+|+++|++++|+.+++.++|. ++||++++++ .+||
T Consensus 92 ~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~ 171 (402)
T TIGR00897 92 HAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGE 171 (402)
T ss_pred HHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch
Confidence 554432 11115788999999999999876 6677888999999999999999999999997 6899999887 6676
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccc
Q 005307 400 KIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDD 479 (703)
Q Consensus 400 ~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (703)
+.++|.......+..++..++.++.+.+...+ +
T Consensus 172 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--------------------------------- 204 (402)
T TIGR00897 172 ----------MNTLWSALAFVLTGGVIALFSNKDIFTPQHMQ----T--------------------------------- 204 (402)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHhccCCCCCccccc----C---------------------------------
Confidence 55555544443333434444444432211100 0
Q ss_pred cccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhh
Q 005307 480 QELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLG 559 (703)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 559 (703)
.+ +..+....++.+++ +|.++...+..++.....+.+.++.|.|..+ +|++..+.+...+..+
T Consensus 205 ----------~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~ 267 (402)
T TIGR00897 205 ----------RE----KFSELGKAATILFT--NPNVLLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFF 267 (402)
T ss_pred ----------Cc----chhhHHHHHHHHHc--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHH
Confidence 00 00000112333333 7788877777777777777888888988865 7999999998888888
Q ss_pred hhhhhHHHHHHhhhhhhhhhHHHHH-HHHHHHHHHHhhcc--ccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhcc
Q 005307 560 LTVLPVNIIVGNYISNIFEERQVLL-ASEIIVCIGILLSF--HILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMS 636 (703)
Q Consensus 560 ~~~~~~~~~~~~~l~~r~g~r~~~~-~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (703)
++..++....+ +++||+++|+.+. .+.+..+++.+.+. ......+.+...+..++.+++.+...+ ..+.+.+..
T Consensus 268 ~~~~ig~~~~g-~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~- 344 (402)
T TIGR00897 268 FTNIVFNVIFG-IVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIALGIFLAGYVP-LAAVFPTLA- 344 (402)
T ss_pred HHHHHHHHHHH-HHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-
Confidence 89999998888 9999999887653 23333333222111 110112344444555666666655444 345555654
Q ss_pred CCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 637 SRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 637 ~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
++ .+|++.|..+. ...+|..++|.+.+ +.+..+
T Consensus 345 ~~-~~g~~~g~~~~--~~~lg~~~gp~i~g~l~~~~g 378 (402)
T TIGR00897 345 PK-HKGAAMSVLNL--SAGLSAFLAPAIAVLFIGFFG 378 (402)
T ss_pred cc-hhHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcc
Confidence 45 69999999844 77899999999666 444444
No 48
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.96 E-value=1.1e-27 Score=252.30 Aligned_cols=349 Identities=12% Similarity=0.027 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHH
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTL 328 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~ 328 (703)
.+.++++.++..++..+.....+.+..+++.++.+.+++.+++.++..++.|++|+++||+|||++++++.+.. +++++
T Consensus 5 f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~ 84 (393)
T PRK11195 5 FYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL 84 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence 34567778888887766667777788999999999999999999999999999999999999999999997755 77777
Q ss_pred HHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccc
Q 005307 329 YAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKIYKLT 405 (703)
Q Consensus 329 ~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~~~ 405 (703)
++++ .+. ++.|+++|++.+. |+..+++.|++|+++|++++|+.+....+|.++||.++|++ .+.|
T Consensus 85 ~~~~---~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~------ 152 (393)
T PRK11195 85 MLFG---IHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHA------ 152 (393)
T ss_pred HHHH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 7776 554 7889999999887 99999999999999999999999999999999999999999 6555
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCC
Q 005307 406 FNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDND 485 (703)
Q Consensus 406 ~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (703)
+.++++.+.+.++.. +..+.+||++.+....+
T Consensus 153 ----~~~~~i~~~~~~~~~-~~~~~l~~~~~~~~~~~------------------------------------------- 184 (393)
T PRK11195 153 ----EAALAVCALIYLLAA-LFNLFIPRLGARRPGQS------------------------------------------- 184 (393)
T ss_pred ----HHHHHHHHHHHHHHH-HHHhcCCCCcccccccC-------------------------------------------
Confidence 777776665544443 33456777653211100
Q ss_pred CCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhH
Q 005307 486 DHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPV 565 (703)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 565 (703)
.+.. .........++.+++ +|.+.......++...........+|.|.++.+|.++.+.|+..+..+++.+++
T Consensus 185 ----~~~~-~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g 257 (393)
T PRK11195 185 ----WNPI-ALLRDFFHACRVLWR--DKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVG 257 (393)
T ss_pred ----CCHH-HHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Confidence 0000 000000011222233 555554444444444555555566777888889999999999999999999999
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccc
Q 005307 566 NIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYN 645 (703)
Q Consensus 566 ~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 645 (703)
+...+ ++.||.++++.+..+..+ ++..++. .. ..+.+...+..++.|++.+...+...+.+++..|++..+|++.
T Consensus 258 ~~~~~-~l~~~~~~~~~~~~g~~~-~~~~~~~-~~--~~~~~~~~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~~~ 332 (393)
T PRK11195 258 AGAAA-RLVTLETVLRVLPAGILM-GLVVLLM-AL--QHSLLPAYPLLILIGALGGFFVVPMNALLQHRGHVLVGAGHSI 332 (393)
T ss_pred HHHHH-HHhcCCcccchHHHHHHH-HHHHHHH-HH--HhHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhCcccccchhHH
Confidence 88887 899998888877766533 3322222 11 2334445556667778777777778888888766651268777
Q ss_pred hhhhHHhhhhhhhhhccceeeeecccc
Q 005307 646 GGLLSTEAGTLARVIADGTITLSGYLG 672 (703)
Q Consensus 646 g~~~~~~~~~~g~~~gp~~~~~~~~~~ 672 (703)
++. +....++..++..+.+.....+
T Consensus 333 a~~--~~~~~~~~~~~~~~~~~~~~~~ 357 (393)
T PRK11195 333 AVQ--NFNENLAMLLMLGLYSLLVKLG 357 (393)
T ss_pred HHH--hHHHHHHHHHHHHHHHHHHHcC
Confidence 777 3477788888887555333333
No 49
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.96 E-value=1.1e-26 Score=246.13 Aligned_cols=342 Identities=15% Similarity=0.157 Sum_probs=245.1
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNT 327 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~ 327 (703)
.+...+...+....+.....+.+|.+.+++|.+..+.+++.+++.++..++.++.|+++||+|||++++.+.+.. ++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 4 FLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHH
Confidence 345566667777788888889999999999999999999999999999999999999999999999999887655 8888
Q ss_pred HHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccc
Q 005307 328 LYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYK 403 (703)
Q Consensus 328 ~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~ 403 (703)
++.++ ++++.++++|++.|++.+. +...+++.|.+|+++|++++++.+....+|.++||.+++.+ ..||
T Consensus 84 ~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~---- 156 (392)
T PRK10473 84 LCSLA---ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPW---- 156 (392)
T ss_pred HHHHh---CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCh----
Confidence 88888 8999999999999999887 78889999999999999999999999999999999999987 6677
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccC
Q 005307 404 LTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELD 483 (703)
Q Consensus 404 ~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (703)
++.|++.+++.++..++..+.+||+++...+.
T Consensus 157 ------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------------------------------------------ 188 (392)
T PRK10473 157 ------QSLFYTMAAMGILVLLLSLFILKETRPARAPA------------------------------------------ 188 (392)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHcCCCCCcccCC------------------------------------------
Confidence 89999998888777777667777764321100
Q ss_pred CCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhh
Q 005307 484 NDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVL 563 (703)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~ 563 (703)
+.......++..+ +++++...+...+.......+..+.|.++.+.+|+++.+.+...+..+++.+
T Consensus 189 -------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i 253 (392)
T PRK10473 189 -------------ASSKPRENSESLL--NRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSM 253 (392)
T ss_pred -------------ccchHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 0000001112222 5555554444444444444455566778888889999999998888899999
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccc
Q 005307 564 PVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGT 643 (703)
Q Consensus 564 ~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 643 (703)
++..+.+ ++.||+|+|+.+..+..+..++.+++... ...+.......+.+.+.+...+. ....+..|.+ +++.
T Consensus 254 ~~~~~~~-~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~g~~~~~~~--~~~~~~~~~~-~~~g 326 (392)
T PRK10473 254 TVSFSTP-FALGIFKPRTLMLTSQVLFLAAGITLALS---PSHAVSLFGITLICAGFSVGFGV--AMSQALGPFS-LRAG 326 (392)
T ss_pred HHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHH--HHHHHhccCc-cccc
Confidence 9988877 99999999999888887777665544333 11222233333334444333333 3334455544 3332
Q ss_pred cchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 644 YNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 644 ~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
..+. ...++..+|+.+++ +.+.++
T Consensus 327 ~~~~-----~~~~~~~~g~~~~~~l~~~~g 351 (392)
T PRK10473 327 VASS-----TLGIAQVCGSSLWIWLAAVLG 351 (392)
T ss_pred HHHH-----HHHHHHHHHHHHHHHHHHHhc
Confidence 1221 22345555555444 555554
No 50
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.96 E-value=5.3e-27 Score=247.37 Aligned_cols=333 Identities=12% Similarity=0.096 Sum_probs=246.1
Q ss_pred HHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhH
Q 005307 261 MVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIA 339 (703)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~ 339 (703)
.++.++..|.+|.+.+++|.++.+.+++.+++.++..++.+++|+++||+|||+++..+.+.. ++.+++.++ ++++
T Consensus 4 ~~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~---~~~~ 80 (377)
T PRK11102 4 PLAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA---QTID 80 (377)
T ss_pred chHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH---ccHH
Confidence 345677789999999999999999999999999999999999999999999999999987755 888889999 9999
Q ss_pred HHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHH
Q 005307 340 VLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWV 415 (703)
Q Consensus 340 ~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i 415 (703)
.++++|++.|++.+. +...+++.|++|+++|++++++......+|..+||.+++.+ .++| +++|++
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~----------~~~~~~ 150 (377)
T PRK11102 81 QLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSW----------HAIFWV 150 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh----------HHHHHH
Confidence 999999999999887 78889999999999999999999999999999999999988 5787 999999
Q ss_pred HHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCccccc
Q 005307 416 MALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSK 495 (703)
Q Consensus 416 ~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (703)
.+++.++..++..+.+||+++...+. ..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------~~---- 178 (377)
T PRK11102 151 LALAAILAAALVFFFIPETLPKERRQ------------------------------------------------PF---- 178 (377)
T ss_pred HHHHHHHHHHHHHHhCCccCcccccC------------------------------------------------CC----
Confidence 88888777766666677754321100 00
Q ss_pred ccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhh
Q 005307 496 ITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISN 575 (703)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~ 575 (703)
.......+++..++ ++.++...+..++...+...+..+.|.++.+.+|+++.+.|.+..+.+++.+++..+.+ ++.|
T Consensus 179 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g-~l~~ 255 (377)
T PRK11102 179 HLRTTIRNFASLFR--HKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINS-RFVR 255 (377)
T ss_pred ChHHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 00000112222222 66666666665555555666666778888888899999999999998888888888877 9999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcccc-ccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhh
Q 005307 576 IFEERQVLLASEIIVCIGILLSFHI-LVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAG 654 (703)
Q Consensus 576 r~g~r~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 654 (703)
|+|+|+.+..+..+..+..+..... ..+.+.+...+...+.+.+.+...+.....+.+..|+ .+|++.+..+.. ..
T Consensus 256 r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~-~~ 332 (377)
T PRK11102 256 RVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMISSNAMAVILDEFPH--MAGTASSLAGTL-RF 332 (377)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHhccccc--cchHHHHHHHHH-HH
Confidence 9999998887776543332221111 0112333344444444444444455555667776664 478777775432 34
Q ss_pred hhhhhhccce
Q 005307 655 TLARVIADGT 664 (703)
Q Consensus 655 ~~g~~~gp~~ 664 (703)
.+|..+++++
T Consensus 333 ~~g~~~g~~~ 342 (377)
T PRK11102 333 GIGAIVGALL 342 (377)
T ss_pred HHHHHHHHHH
Confidence 4666666663
No 51
>PRK12382 putative transporter; Provisional
Probab=99.96 E-value=2.5e-27 Score=250.91 Aligned_cols=340 Identities=18% Similarity=0.190 Sum_probs=238.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHH-HHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HH
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNY-SLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VG 325 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~ 325 (703)
+.++.+.++.++..++.++..|.+|.+ .+++|.|+.++|++.+++.++..++++++|+++||+|||++++.+.+.. ++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~ 94 (392)
T PRK12382 15 FSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA 94 (392)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence 455666677888888899999999986 4679999999999999999999999999999999999999998886543 44
Q ss_pred HHHH---Hhhc--ccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--c
Q 005307 326 NTLY---AMAY--DLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--Q 396 (703)
Q Consensus 326 ~~~~---~~a~--~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~ 396 (703)
.+.+ ++.. ..++++.++++|+++|++.+. +...+++.|++|+++|++++++.+.+..+|.++||++++++ .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~ 174 (392)
T PRK12382 95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH 174 (392)
T ss_pred HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3322 2210 115889999999999999887 77788999999999999999999999999999999999988 6
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCC
Q 005307 397 TNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDE 476 (703)
Q Consensus 397 ~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (703)
+|| ++.+++..++.++.... ....||.+....
T Consensus 175 ~g~----------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------------------------------------- 206 (392)
T PRK12382 175 FGF----------AALALTTMVLPLLAWAF-NGTVRKVPAHAG------------------------------------- 206 (392)
T ss_pred cCh----------HHHHHHHHHHHHHHHHH-HHhccCCCCCcc-------------------------------------
Confidence 787 77666554443322211 111122111000
Q ss_pred ccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHH
Q 005307 477 NDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLA 556 (703)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 556 (703)
. ..+.++..+. ++...+..++..........+.|.|+.+ .|++ ..++...
T Consensus 207 -------------------~----~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~ 256 (392)
T PRK12382 207 -------------------E----RPSLWSVVGL----IWKPGLGLALQGVGFAVIGTFVSLYFAS-KGWA--MAGFTLT 256 (392)
T ss_pred -------------------c----CchHHHHHHH----HHHhHHHHHHHHHHHhHHHHHHHHHHHh-cCCc--hhHHHHH
Confidence 0 0011111111 1111112222333444455566777765 4554 3555566
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhcc
Q 005307 557 CLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMS 636 (703)
Q Consensus 557 ~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (703)
..+++.+++..+.+ ++.||+|+|+.+..+..+.++++++.... .+.+...+..++.+++.+...+...+.+.+..|
T Consensus 257 ~~~~~~~~~~~~~g-~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~ 332 (392)
T PRK12382 257 AFGGAFVLMRVLFG-WMPDRFGGVKVAIVSLLVETVGLLLLWLA---PTAWVALAGAALTGAGCSLIFPALGVEVVKRVP 332 (392)
T ss_pred HHHHHHHHHHHHHH-HHHHhcCCCeehHHHHHHHHHHHHHHHHc---ccHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence 66677777777777 99999999998888887777775543332 334455566677778777777888888888898
Q ss_pred CCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 637 SRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 637 ~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
++ .+|++.|..+. ...+|..++|.+.+ +.+..+
T Consensus 333 ~~-~~g~~~g~~~~--~~~~g~~ig~~~~g~l~~~~g 366 (392)
T PRK12382 333 SQ-VRGTALGGYAA--FQDIAYGVSGPLAGMLATSFG 366 (392)
T ss_pred HH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC
Confidence 88 89999999844 67789999999666 444333
No 52
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.96 E-value=1.2e-27 Score=255.36 Aligned_cols=349 Identities=12% Similarity=0.053 Sum_probs=254.9
Q ss_pred HHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHH
Q 005307 251 LLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLY 329 (703)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~ 329 (703)
..+++..++..++.++..+.+|.+.++++.++.+.|++.+++.++.++++++.|+++||+|||++++.+.+.. ++.+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~ 99 (417)
T PRK10489 20 RAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGL 99 (417)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHH
Confidence 3455567778888888889999999999999999999999999999999999999999999999888775433 444433
Q ss_pred Hhh--cccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccc
Q 005307 330 AMA--YDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYK 403 (703)
Q Consensus 330 ~~a--~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~ 403 (703)
++. ...++++.+++.|++.|++.+. +...+++.|++|+++|+++.++.....++|..+||.+++.+ ..+|
T Consensus 100 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~---- 175 (417)
T PRK10489 100 ALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGV---- 175 (417)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhh----
Confidence 321 0126889999999999998776 77888999999999999999999999999999999999988 5677
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccC
Q 005307 404 LTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELD 483 (703)
Q Consensus 404 ~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (703)
++.|++.++..++..++ .+.+|+++++..++
T Consensus 176 ------~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~------------------------------------------ 206 (417)
T PRK10489 176 ------AWNYGLAAAGTFITLLP-LLRLPALPPPPQPR------------------------------------------ 206 (417)
T ss_pred ------HHHHHHHHHHHHHHHHH-HHhCCCCCCCCccc------------------------------------------
Confidence 88888877766655544 34466653321100
Q ss_pred CCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhh
Q 005307 484 NDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVL 563 (703)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~ 563 (703)
.+ ........++..++ +|.++...+..++... ......++|.|..+.+|.++...|++.+..+++.+
T Consensus 207 ------~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ 273 (417)
T PRK10489 207 ------EH----PLRSLLAGFRFLLA--SPVVGGIALLGGLLTM-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAA 273 (417)
T ss_pred ------cc----chHHHHHHHHHHHc--ChHHHHHHHHHHHHHH-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHH
Confidence 00 00000011222222 5555544444433322 34566678889988889999999999999888888
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccc
Q 005307 564 PVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGT 643 (703)
Q Consensus 564 ~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 643 (703)
++..+.+ ++.||.++++.+..+.++.++++++.... .+++...+..++.+++.+...+...+++.+..|++ .||+
T Consensus 274 ig~~~~~-~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~-~~g~ 348 (417)
T PRK10489 274 LGALTSG-WLAHSARPGLLMLLSTLGSFLAVGLFGLM---PMWILAVLCLALFGYLSAISSLLQYTLLQTQTPDE-MLGR 348 (417)
T ss_pred HHHHHHH-HhhhccCcchHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHH-HHHH
Confidence 8888877 99998777777777777666665443222 34445556666667777766777788999999988 8999
Q ss_pred cchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 644 YNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 644 ~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
++|..+ ....+|..+||.+.+ +.+..+
T Consensus 349 ~~g~~~--~~~~~g~~~g~~l~G~l~~~~g 376 (417)
T PRK10489 349 INGLWT--AQNVTGDAIGAALLGGLGAMMT 376 (417)
T ss_pred HHHHHH--HHHhhhHhHHHHHHHHHHHHhc
Confidence 999984 477789999999666 444444
No 53
>PRK10133 L-fucose transporter; Provisional
Probab=99.96 E-value=1.3e-26 Score=246.82 Aligned_cols=351 Identities=12% Similarity=0.050 Sum_probs=252.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-V 324 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~ 324 (703)
....+.++.+..++..+......+.+|.+.+++|.++.+.|++.+.+.++.++++++.|+++||+|||+++..+++.. +
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~ 103 (438)
T PRK10133 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYAL 103 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 445566667777788888888888999999999999999999999999999999999999999999999999997765 7
Q ss_pred HHHHH---HhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-c-c
Q 005307 325 GNTLY---AMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-Q-T 397 (703)
Q Consensus 325 ~~~~~---~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~-~ 397 (703)
+++++ .++ ++++.++++|+++|+|.|. +...+++.|+.|+++|+..+++.+..+.+|..+||++++.+ . .
T Consensus 104 ~~~l~~~~~~a---~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~ 180 (438)
T PRK10133 104 GAALFWPAAEI---MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSN 180 (438)
T ss_pred HHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77765 456 8999999999999999887 78888899987777777789999999999999999998764 1 1
Q ss_pred ------------------cccccccccccchhHHHHHHHHHH-HHHHHHHHhccCCCccccccccccccccccccccccC
Q 005307 398 ------------------NFKIYKLTFNEDTLPGWVMALLWL-VYLLWLWISFREPPLETKENLVPQEANAGLLINCTVD 458 (703)
Q Consensus 398 ------------------g~~~~~~~~~~~~~~f~i~~~~~~-~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (703)
+|+ .....+||++|+....+.. +.+++....+||.+.....
T Consensus 181 ~~~~~~~~~~~l~~~~~~~w~--~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~~~~------------------ 240 (438)
T PRK10133 181 VPHQSQDVLDKMTPEQLSAYK--HSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS------------------ 240 (438)
T ss_pred CcccchhhhhccChhhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc------------------
Confidence 120 0001245777765443333 3222222223332110000
Q ss_pred CCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhH
Q 005307 459 NGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSV 538 (703)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (703)
. ..........+.+++ +|.++...+..++..........+.+.
T Consensus 241 -------------------------------~----~~~~~~~~~~~~ll~--~~~~~~~~l~~~~~~~~~~~~~~~~~~ 283 (438)
T PRK10133 241 -------------------------------D----AKQGSFSASLSRLAR--IRHWRWAVLAQFCYVGAQTACWSYLIR 283 (438)
T ss_pred -------------------------------c----ccccchhhhHHHHHh--CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000000112233333 677766666666666666666677787
Q ss_pred Hh-hhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHH
Q 005307 539 IT-EHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITF 617 (703)
Q Consensus 539 ~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (703)
|+ ++.+|+++.++++.+....++.++++.+.+ ++.||+++|+++..+..+.++++++.... .+. ..+....+.+
T Consensus 284 ~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g-~l~~r~g~~~~l~~~~~~~~~~~~~~~~~---~~~-~~~~~~~l~g 358 (438)
T PRK10133 284 YAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT-WLISRFAPHKVLAAYALIAMALCLISAFA---GGH-VGLIALTLCS 358 (438)
T ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCHHHHHHHHHHHHHHHHHHHHHc---CCh-HHHHHHHHHH
Confidence 75 567899999999999999999999998877 99999999999888876666554443332 112 2245567778
Q ss_pred hhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 618 VAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
++.+.++|..++...+..|++ .+++.++.. ...+|..++|.+.+
T Consensus 359 lg~~~i~P~~~s~a~~~~~~~--~~~as~l~~---~~~~g~~~~~~i~G 402 (438)
T PRK10133 359 AFMSIQYPTIFSLGIKNLGQD--TKYGSSFIV---MTIIGGGIVTPVMG 402 (438)
T ss_pred HHHHHHHHHHHHHHHcccchh--hccchhHHh---HHhccchHHHHHHH
Confidence 999999999999999998876 555566652 23356777777444
No 54
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.96 E-value=5.4e-28 Score=263.45 Aligned_cols=387 Identities=16% Similarity=0.091 Sum_probs=245.6
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhc--------CccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhH
Q 005307 244 RYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSL--------GAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPL 315 (703)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~ 315 (703)
.++++.+++..++.+..+++.+++.+..|.+.+.+ +.++.+.|++.+++.++.+++++++|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~ 87 (479)
T PRK10077 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (479)
T ss_pred hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 44566777778888899999999999989888877 8889999999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHhhc---------ccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHH
Q 005307 316 VFSSIVLL-VGNTLYAMAY---------DLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASAL 383 (703)
Q Consensus 316 l~~~~~~~-~~~~~~~~a~---------~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~ 383 (703)
++++.+.. ++.++++++. ..+.++.++++|+++|++.|. +...++++|++|+++|++++++.+.+..+
T Consensus 88 ~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~ 167 (479)
T PRK10077 88 LKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIF 167 (479)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHH
Confidence 99987655 7777666531 113467889999999999887 88999999999999999999999999999
Q ss_pred HHHHHHHhhhhh-cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCC
Q 005307 384 GMACGPALACLF-QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGST 462 (703)
Q Consensus 384 G~~lgp~i~~~l-~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (703)
|.++++++++.+ ..+-. ......+||++|++.+++.++..+. .+++||+|++...+++.+++.....+..+.+
T Consensus 168 G~~~~~~~~~~~~~~~~~-~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~---- 241 (479)
T PRK10077 168 GQLVVYFVNYFIARSGDA-SWLNTDGWRYMFASEAIPALLFLML-LYFVPETPRYLMSRGKQEQAEGILRKIMGNT---- 241 (479)
T ss_pred HHHHHHHHHHHHhccCcc-cccccCChHHHHHHHHHHHHHHHHH-HHcCCCCcHHHHHcCCHHHHHHHHHHHcCCh----
Confidence 999998887655 21100 0001124599999988777776544 5668998865322111111100000000000
Q ss_pred CcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHH---HH-HHHHHHHHHHHhhhhH
Q 005307 463 RPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLF---VY-FMLKYAMEILLAESSV 538 (703)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~ 538 (703)
.. + +..+ +............+..+ ......... .. +...........+.|.
T Consensus 242 ~~-------~---~~~~------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 296 (479)
T PRK10077 242 LA-------T---QALQ------------EIKHSLDHGRKTGGKLL---MFGVGVIVIGVMLSVFQQFVGINVVLYYAPE 296 (479)
T ss_pred hH-------H---HHHH------------HHHHHHHHhhhhhhhhc---chhHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence 00 0 0000 00000000000000000 000000110 01 1111112222333344
Q ss_pred HhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccc-cccchhHHHHHHHHHH
Q 005307 539 ITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHIL-VPYSVPQYVGSALITF 617 (703)
Q Consensus 539 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~ 617 (703)
+. +..|++....++.....+++.+++..+.+ +++||+|+|++++.+.++++++.+++.... .+..........++++
T Consensus 297 i~-~~~g~~~~~~~~~~~~~~~~~~i~~~~~g-~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~ 374 (479)
T PRK10077 297 IF-KTLGASTDIALLQTIIVGVINLTFTVLAI-MTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYV 374 (479)
T ss_pred HH-HHcCCCCchHHHHHHHHHHHHHHHHHHHH-HHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 44 44688877777777777778888887777 999999999999988888877765432111 1111222333334444
Q ss_pred hhhhh-hhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 618 VAAEV-LEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 618 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
.+.+. ..|....++++.+|++ .||++.|.. ...+.+|.++++.+..
T Consensus 375 ~~~~~~~~~~~~~~~~e~~p~~-~r~~~~g~~--~~~~~~g~~~~~~~~p 421 (479)
T PRK10077 375 AAFAMSWGPVCWVLLSEIFPNA-IRGKALAIA--VAAQWIANYFVSWTFP 421 (479)
T ss_pred HHHhccccchhHHHhHhhCChh-HHHHHHHHH--HHHHHHHHHHHHHHhH
Confidence 44432 3467789999999988 899989987 4477788887765443
No 55
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.96 E-value=3.4e-27 Score=247.89 Aligned_cols=350 Identities=16% Similarity=0.119 Sum_probs=245.4
Q ss_pred HHHHHHHHHHHHHhhhhhccchhH-HHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADN-YSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNT 327 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~ 327 (703)
.+..+++.++.........+.+|. +.+++|.++.+.|++.+++.++.+++++++|+++||+|||++++++.+.. ++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~ 82 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL 82 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 345667777778888888899995 77889999999999999999999999999999999999999999887755 8889
Q ss_pred HHHhhcccc-hhHHHHHHHHHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-c-ccccccc
Q 005307 328 LYAMAYDLN-SIAVLLIGRLFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-Q-TNFKIYK 403 (703)
Q Consensus 328 ~~~~a~~~~-~~~~l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~-~g~~~~~ 403 (703)
+++++ + +++.++++|++.|++.+. +...++++|++|+++|++++++...+..+|..+|+.+++.+ . ..-..+.
T Consensus 83 ~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~ 159 (366)
T TIGR00886 83 WAGLA---VQSYSVLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGL 159 (366)
T ss_pred HHHHH---hhhHHHHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999 8 999999999999999776 67788999999999999999999988888888888777665 2 1000000
Q ss_pred cccccchhHHH-HHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcccccc
Q 005307 404 LTFNEDTLPGW-VMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQEL 482 (703)
Q Consensus 404 ~~~~~~~~~f~-i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (703)
....+||+.|+ +.+++..+..++.+...+|.++...+.+ +. +.+..
T Consensus 160 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------------------------~~~~~--- 206 (366)
T TIGR00886 160 PAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATG---KL---------------------------SFKGA--- 206 (366)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccch---hc---------------------------ccccc---
Confidence 01123489884 4455555555555555666553221100 00 00000
Q ss_pred CCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhh
Q 005307 483 DNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTV 562 (703)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~ 562 (703)
.. ...........+..+ +++++...+..++.......+..+.|.|+.+.+|+++.+++.+..+..+++
T Consensus 207 -------~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 274 (366)
T TIGR00886 207 -------RW---SVGTGALGDQLKVFR--DRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLG 274 (366)
T ss_pred -------cc---cccchhHHHHHHHHh--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 00 000000012222222 677777777777666667777888899999889999999998888888888
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhcccccccc-chhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcc
Q 005307 563 LPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPY-SVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSR 641 (703)
Q Consensus 563 ~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (703)
+++..+.+ ++.||+|+|+.+..+..+.+++..++....... +.+..++...+..++.+...+...+++++..|. .+
T Consensus 275 ~~~~~~~g-~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~ 351 (366)
T TIGR00886 275 SLARPLGG-AISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFRR--AT 351 (366)
T ss_pred HHHhhccc-hHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhccccchhhhcchhhchh--hc
Confidence 88887777 999999998877777665555544332221111 344444445555556666666777888888875 48
Q ss_pred cccchhhhH
Q 005307 642 GTYNGGLLS 650 (703)
Q Consensus 642 g~~~g~~~~ 650 (703)
|++.|.+++
T Consensus 352 g~~~g~~~~ 360 (366)
T TIGR00886 352 GAVSGLVGA 360 (366)
T ss_pred ccHHHHHHH
Confidence 888888733
No 56
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.96 E-value=1.1e-26 Score=254.28 Aligned_cols=371 Identities=17% Similarity=0.158 Sum_probs=253.0
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 005307 244 RYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL 323 (703)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~ 323 (703)
+.+|+.+..++++.++..++.....+.+|.+.+++|.++.+.+++.+++.++.+++.++.|+++||+|||++++++.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~ 95 (496)
T PRK03893 16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLF 95 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 45677888888999999999999999999999999999999999999999999999999999999999999999887654
Q ss_pred -HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccc
Q 005307 324 -VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTN 398 (703)
Q Consensus 324 -~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g 398 (703)
++.++++++ ++++.++++|++.|++.+. +...+++.|.+|+++|++++++...+..+|..++|.+++.+ .++
T Consensus 96 ~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 172 (496)
T PRK03893 96 SVGTLACGFA---PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG 172 (496)
T ss_pred HHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 888999999 9999999999999999776 88889999999999999999999999999999999999988 677
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcc
Q 005307 399 FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEND 478 (703)
Q Consensus 399 ~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (703)
| |+.|++.++..++ .++....+||+++.....++..+. + +.
T Consensus 173 w----------~~~f~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~---------------~-------------~~ 213 (496)
T PRK03893 173 W----------RALFFIGILPIIF-ALWLRKNLPEAEDWKEKHAGKAPV---------------R-------------TM 213 (496)
T ss_pred H----------HHHHHHHHHHHHH-HHHHHHhCCCchhhhhhccccccc---------------h-------------hH
Confidence 7 8888875444333 223333456554321110000000 0 00
Q ss_pred ccccCCCCCCCCcccccccCCCcccH---------HHHHHh--------------------------h--CcchHHHHHH
Q 005307 479 DQELDNDDHDEDDEDSKITHRPVTSI---------MSAYRL--------------------------L--TPSVKVQLFV 521 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--------------------------~--~~~~~~~~~~ 521 (703)
. +.....+....... ...... . +.+....+..
T Consensus 214 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (496)
T PRK03893 214 V-----------DILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMV 282 (496)
T ss_pred H-----------HHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 0 00000000000000 000000 0 0000000000
Q ss_pred H-HHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhcccc
Q 005307 522 Y-FMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHI 600 (703)
Q Consensus 522 ~-~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~ 600 (703)
. ++..........++|.|+.+.+|++..+++.+.++.+++.+++..+.+ ++.||+++|+.+..+..+..++.++....
T Consensus 283 ~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g-~l~dr~g~~~~~~~~~~~~~~~~~~~~~~ 361 (496)
T PRK03893 283 VVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGG-FLGDWLGTRKAYVCSLLISQLLIIPVFAI 361 (496)
T ss_pred HHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHhhc
Confidence 0 111111112445688899878899999999999999999999988877 99999999998887766655554332222
Q ss_pred ccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 601 LVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
. ....+...+..++.+.......+...+++++.+|++ .+|+++|+.++ ...+|..+||.+.+ +.+..+
T Consensus 362 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~--~~~~g~~lgp~l~g~l~~~~g 430 (496)
T PRK03893 362 G-GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTE-QRAAGLGFTYN--VGALGGALAPILGALIAQRLD 430 (496)
T ss_pred c-ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHH-Hhhcccchhhh--hhhHHHHHHHHHHHHHhccCC
Confidence 1 122222222222222222233456667888999988 89999999844 67799999999665 444433
No 57
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.96 E-value=4.4e-28 Score=264.66 Aligned_cols=383 Identities=15% Similarity=0.127 Sum_probs=242.6
Q ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHhcCcc--------chhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHH
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADNYSLSLGAA--------ATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIV 321 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s--------~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~ 321 (703)
..++.++.++..++.....+.+|....+++.+ ..+.|++.+++.++..++++++|+++||+|||++++++.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~ 109 (481)
T TIGR00879 30 SLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIAL 109 (481)
T ss_pred HHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHH
Confidence 33444555666677778888888888887766 8999999999999999999999999999999999998876
Q ss_pred HH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhh---hhh
Q 005307 322 LL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALA---CLF 395 (703)
Q Consensus 322 ~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~---~~l 395 (703)
+. ++.+++.++....+++.++++|++.|++.|. +...++++|++|+++|++++++++.+..+|.++||+++ +..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 189 (481)
T TIGR00879 110 LFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSL 189 (481)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 55 7777776653225667999999999999887 78899999999999999999999999999999999999 554
Q ss_pred --cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcc
Q 005307 396 --QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQ 473 (703)
Q Consensus 396 --~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (703)
..+| |++|++.++..++.+ +..+++||+|+....+++.+++.....+....+. ..+... +.
T Consensus 190 ~~~~~w----------~~~f~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~ 252 (481)
T TIGR00879 190 NNTLGW----------RIPLGLQLIPAGLLF-LGLFFLPESPRWLVGKGRVEEARKSLARLRGTSG--EDKELL----DE 252 (481)
T ss_pred CCCccH----------HHHHHHHHHHHHHHH-HHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCC--CcHHHH----HH
Confidence 5566 999999665555444 4455688887543221111111000000000000 000000 00
Q ss_pred cCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhC---cchHHHHHHHHHHHHH-HHHHHhhhhHHhhhhccccch
Q 005307 474 KDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLT---PSVKVQLFVYFMLKYA-MEILLAESSVITEHYFIWSTS 549 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~s~~ 549 (703)
... .. .... .........+..+++... ++........++.... ......+.|.+ .+.+|++..
T Consensus 253 ~~~-~~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~ 319 (481)
T TIGR00879 253 LEL-ID----------IKRS-IEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTI-FENAGVSTD 319 (481)
T ss_pred HHH-HH----------HHHH-HHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHH-HHHcCCCch
Confidence 000 00 0000 000000111333333211 2222222222222222 22333334444 455799998
Q ss_pred hHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhcc---cccccc----chhHHHHHHHHHHhhhh-
Q 005307 550 RVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSF---HILVPY----SVPQYVGSALITFVAAE- 621 (703)
Q Consensus 550 ~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~- 621 (703)
+.+....+.+++.+++..+.+ ++.||+++|+.+.+++++++++++++. ...... .....+....+++.+.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (481)
T TIGR00879 320 HAFLVSIIVGAVNFAFTFVAI-FLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAM 398 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHc
Confidence 888888888888888888877 999999999998888777776654432 111011 02222222233333333
Q ss_pred hhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 622 VLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 622 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
...+....++.+.+|++ .||++.|.. .....+|.+++|.+.+
T Consensus 399 ~~~~~~~~~~~~~~p~~-~~~~~~~~~--~~~~~lg~~i~~~~~~ 440 (481)
T TIGR00879 399 GWGPVPWVIVSEIFPLS-LRPKGISIA--VAANWLANFIVGFLFP 440 (481)
T ss_pred cccCeehhhhhccCChH-HHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 23355667778999988 899988988 4477899999998555
No 58
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.96 E-value=7.5e-27 Score=243.04 Aligned_cols=388 Identities=13% Similarity=0.103 Sum_probs=267.1
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhHHHH-hcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH
Q 005307 244 RYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSL-SLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL 322 (703)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~ 322 (703)
+..++.+.+..++.++......+..|..+.+.+ ++|+|+++.+++.+++.++..++.++.|++.||+|.|+++.++++.
T Consensus 30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll 109 (462)
T PRK15034 30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAI 109 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 345678888888888888899999998888876 7999999999999999999999999999999999999988888665
Q ss_pred H-HHHHHHHhhc--ccchhHHHHHHHHHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhh----
Q 005307 323 L-VGNTLYAMAY--DLNSIAVLLIGRLFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACL---- 394 (703)
Q Consensus 323 ~-~~~~~~~~a~--~~~~~~~l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~---- 394 (703)
. +.+++.+++. ..++++.+++.|++.|++++. +.....+++++|+++||+++|+.....++|..++++++..
T Consensus 110 ~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gigg~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~ 189 (462)
T PRK15034 110 LIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFV 189 (462)
T ss_pred HHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4 7777777641 226899999999999998656 8899999999999999999999966666666554444332
Q ss_pred -h--ccccccccc---ccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCccccc
Q 005307 395 -F--QTNFKIYKL---TFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLN 468 (703)
Q Consensus 395 -l--~~g~~~~~~---~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (703)
+ .+||..... ...+|+.++++..++.++..++.+++.++.+....
T Consensus 190 ~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~~~----------------------------- 240 (462)
T PRK15034 190 PVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASSRA----------------------------- 240 (462)
T ss_pred HHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc-----------------------------
Confidence 1 344421000 12235777778777777777666665554332100
Q ss_pred chhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccc
Q 005307 469 SEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWST 548 (703)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 548 (703)
.........+ +|.+|.+.+.+++.+.++.++..++|.|..+.+ +.
T Consensus 241 -------------------------------~~~~~~~vlk--~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~--~~ 285 (462)
T PRK15034 241 -------------------------------SIADQLPVLQ--RLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQF--PD 285 (462)
T ss_pred -------------------------------CHHHHHHHhC--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--Ch
Confidence 0112223333 889999999999988888888888999988755 33
Q ss_pred hhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccc---cccchhHHHHHHHHHHhhhhhhhH
Q 005307 549 SRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHIL---VPYSVPQYVGSALITFVAAEVLEG 625 (703)
Q Consensus 549 ~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 625 (703)
........+..++..++..+.| +++||+|+++++.++.+++.++....+... ...+.+.+.+..+..+++.+..+.
T Consensus 286 ~~~l~~~~l~~l~~~l~rplgG-~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gng 364 (462)
T PRK15034 286 VNILRLAFFGPFIGAIARSVGG-AISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSG 364 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhhH-HHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcccch
Confidence 2222223334456666666656 999999999999888876666643221111 113455556655555667777777
Q ss_pred HHHHHHHhhccC------C--------------CcccccchhhhHHhhhhhhhhhccceee-eeccccCCcccccchhHH
Q 005307 626 VNLSLLSRVMSS------R--------------LSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLGESRLLNVTLLPS 684 (703)
Q Consensus 626 ~~~~~~~~~~~~------~--------------~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~~~~~~~~~~~~~ 684 (703)
..+-++...+|+ + .+.|.+.|+. ...+.+|+++-|.+.+ ..+..+.. ...+..+
T Consensus 365 svfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v--~a~G~~Ggf~~p~~~g~~~~~~g~~---~~~~~~~ 439 (462)
T PRK15034 365 STFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFI--SAIGAVGGFFIPQAFGMSLNMTGSP---VGAMKVF 439 (462)
T ss_pred HHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHH--HHHHHcccchhhHHHHHHHHHcCCc---HHHHHHH
Confidence 888888888874 0 0245566666 4477788888887544 33333421 2234445
Q ss_pred HHHHHHHHHHHHHhhcc
Q 005307 685 LFICISSIVATCITYNS 701 (703)
Q Consensus 685 ~~~~~~~~~~~~~~~~~ 701 (703)
.+..++|++..++.|.|
T Consensus 440 ~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 440 LIFYIVCVLLTWLVYGR 456 (462)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 55555555555555543
No 59
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.96 E-value=2.5e-27 Score=258.40 Aligned_cols=390 Identities=14% Similarity=0.121 Sum_probs=246.0
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhc-----CccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHH
Q 005307 244 RYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSL-----GAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFS 318 (703)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~ 318 (703)
+.+++.+.++.++.++.+++.+.+..++|.+..++ +.++.+.+++.+++.++.+++++++|+++||+|||+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~ 91 (502)
T TIGR00887 12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM 91 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 45667777888888999999988888888776642 3456678999999999999999999999999999999998
Q ss_pred HHHHH-HHHHHHHhhcccch------hHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHH
Q 005307 319 SIVLL-VGNTLYAMAYDLNS------IAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGP 389 (703)
Q Consensus 319 ~~~~~-~~~~~~~~a~~~~~------~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp 389 (703)
+++.. ++.++++++ ++ ++.++++|++.|++.|. +...++++|++|+++|++++++...+..+|.++|+
T Consensus 92 ~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~ 168 (502)
T TIGR00887 92 ELIIMIIATVASGLS---PGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGA 168 (502)
T ss_pred HHHHHHHHHHHHHHc---cCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHH
Confidence 87655 888888887 44 78999999999999887 88999999999999999999999999999999999
Q ss_pred Hhhhhh-c-cccccc-------------ccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccc-ccccccc
Q 005307 390 ALACLF-Q-TNFKIY-------------KLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQE-ANAGLLI 453 (703)
Q Consensus 390 ~i~~~l-~-~g~~~~-------------~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~-~~~~~~~ 453 (703)
.++.++ . ..-..+ .....+||++|.+.++.+++.++ ..+++||+|++...+++.++ +.+...+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~-~~~~lpESpr~l~~~~~~~~~a~~~~~~ 247 (502)
T TIGR00887 169 IVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALY-FRLTIPETPRYTADVAKDVEQAASDMSA 247 (502)
T ss_pred HHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHH-HHHhCCCCHHHHHHhCcchHHHHHHHHH
Confidence 988765 1 110000 00112579999887776665544 45678999997654333221 1110000
Q ss_pred ccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhh-Ccch----HHHHHHHHHHHHH
Q 005307 454 NCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLL-TPSV----KVQLFVYFMLKYA 528 (703)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~ 528 (703)
....+. +.+.++.+ . .++ .+.....+++++++.. .++. +......++..+.
T Consensus 248 ~~~~~~------------~~~~~~~~----~-----~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (502)
T TIGR00887 248 VLQVKI------------EAEPDEVE----K-----AST---AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIA 303 (502)
T ss_pred Hhcccc------------ccCccccc----c-----hhc---cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 000000 00000000 0 000 0000112455554421 1122 1122223333344
Q ss_pred HHHHHhhhhHHhhhhccccchhHHH------------HHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhh
Q 005307 529 MEILLAESSVITEHYFIWSTSRVAI------------FLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILL 596 (703)
Q Consensus 529 ~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~ 596 (703)
+++...+.|.++.+ .|+++...+. ...+..++.+++.++.+ +++||+|||++++++.+++++++++
T Consensus 304 ~y~~~~~~p~i~~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~-~l~dr~gRR~~l~~~~~~~~~~~~~ 381 (502)
T TIGR00887 304 FYGVNLNQKVILSA-IGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTV-FLVDIIGRKPIQLMGFFILTVLFFV 381 (502)
T ss_pred HHccccccHHHHHH-HcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhcchhHHHHHHHHHHHHHHH
Confidence 44555556777754 5776543211 11222334444555556 9999999999988887776666543
Q ss_pred ccccccc-cchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 597 SFHILVP-YSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 597 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+...... ..........+...++.....+..+.+.+|.+|++ .||+..|+.+ ..+.+|.+++|.+.+
T Consensus 382 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~-~R~~~~g~~~--~~~~~~~~~~~~~~~ 449 (502)
T TIGR00887 382 LGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTR-YRSTAHGISA--ASGKAGAIIGQFGFL 449 (502)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchh-HHHHHHHHHH--HHhhhHHHHHHHHhh
Confidence 3221100 11111111111111222233456677789999999 9999899884 478899999998555
No 60
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.96 E-value=1.5e-26 Score=243.42 Aligned_cols=343 Identities=11% Similarity=0.013 Sum_probs=258.0
Q ss_pred HHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHH-H-HH-HHHH
Q 005307 251 LLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSI-V-LL-VGNT 327 (703)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~-~-~~-~~~~ 327 (703)
..+.+..+...++.++..|.+|.+.+++|.|..++|++.+++.++..++++++|+++||+||+......+ + .. ....
T Consensus 7 ~~l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~ 86 (382)
T TIGR00902 7 RWLALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAA 86 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 3355677778888899999999999999999999999999999999999999999999999865332221 1 11 2223
Q ss_pred HHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccc
Q 005307 328 LYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYK 403 (703)
Q Consensus 328 ~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~ 403 (703)
.+.++ ++++.+++.|++.|.+.+. |...++..+. .++|++++|......++|.++||++++++ .+||
T Consensus 87 ~~~~~---~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~---- 157 (382)
T TIGR00902 87 FSAGA---HNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDE---- 157 (382)
T ss_pred HHHhh---hhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcCh----
Confidence 44466 8999999999999888665 7777776654 57889999999999999999999999998 6788
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccC
Q 005307 404 LTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELD 483 (703)
Q Consensus 404 ~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (703)
|..|++..++.++ .++. +.+++++++..+.
T Consensus 158 ------~~~f~~~~~~~~~-~~~~-~~~~~~~~~~~~~------------------------------------------ 187 (382)
T TIGR00902 158 ------QNILAILTAGLAF-MLIG-FLIKPTIPPKDAI------------------------------------------ 187 (382)
T ss_pred ------hHHHHHHHHHHHH-HHHH-HHcCCCCCCCccc------------------------------------------
Confidence 8888887655332 2222 2334332111100
Q ss_pred CCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhh
Q 005307 484 NDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVL 563 (703)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~ 563 (703)
.+ .+......++++.+ +|+++...+..++...+...+.++.|+|+++ .|.++.++|+.+++..++.+
T Consensus 188 ------~~----~~~~~~~~~~~~l~--~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i 254 (382)
T TIGR00902 188 ------PE----DESQGDSAFIALLK--NPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA-AGISASATGLLWGIGVLAEI 254 (382)
T ss_pred ------cc----cccccchhHHHHHc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHH
Confidence 00 00001112344444 8888888888888888888888899999976 79999999999988777777
Q ss_pred hHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccc
Q 005307 564 PVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGT 643 (703)
Q Consensus 564 ~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 643 (703)
++..+.+ ++.||+|.|+++.++.++..+...+... ..+.+.+++..++.+++++...+....++++. |++ .+++
T Consensus 255 ~~~~~~~-~l~~r~g~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~-~~~~ 328 (382)
T TIGR00902 255 IIFAFSN-KLFQNCSARDLLLISAIACVGRWAIIGA---IEAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGS-EIAK 328 (382)
T ss_pred HHHHHhH-HHHhhCCHHHHHHHHHHHHHHHHHHHHh---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHh-hHHH
Confidence 7777766 9999999999999998888888654433 25667777788999999999999999999987 777 7788
Q ss_pred cchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 644 YNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 644 ~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
..+.++. ....+|.++||.+++ +++..+
T Consensus 329 ~q~~~~~-~~~g~g~~~g~~~~G~l~~~~g 357 (382)
T TIGR00902 329 LQALYNA-LAMGGLIAIFTAFAGFIYPTLG 357 (382)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhcc
Confidence 7888643 356688999999666 555544
No 61
>PRK11043 putative transporter; Provisional
Probab=99.96 E-value=4.9e-26 Score=241.86 Aligned_cols=338 Identities=13% Similarity=0.114 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHH
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTL 328 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~ 328 (703)
+.++.+..++..+..++..|.+|.+.+++|.++.+.|++.+++.++..++++++|+++||+|||++++.+.+.. ++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 87 (401)
T PRK11043 8 LVYLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLG 87 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHH
Confidence 33444445566677888889999999999999999999999999999999999999999999999999887655 88888
Q ss_pred HHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccccccccc
Q 005307 329 YAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKL 404 (703)
Q Consensus 329 ~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~ 404 (703)
++++ ++++.++++|++.|++.+. +...+++.|++|++++++..+.......+|..+||.+++++ .+||
T Consensus 88 ~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~----- 159 (401)
T PRK11043 88 MLWV---ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGW----- 159 (401)
T ss_pred HHHh---cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh-----
Confidence 8898 9999999999999999776 66778899999999999999999999999999999999988 6787
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCC
Q 005307 405 TFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDN 484 (703)
Q Consensus 405 ~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (703)
|++|++.+++.++..++.++ ++++++..++
T Consensus 160 -----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------------------------------------- 189 (401)
T PRK11043 160 -----QAIFATLFAITLLLILPTLR-LKPSKKARKQ-------------------------------------------- 189 (401)
T ss_pred -----HHHHHHHHHHHHHHHHHHHH-cCCCCCcccc--------------------------------------------
Confidence 99999888877776655443 4443321100
Q ss_pred CCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhh
Q 005307 485 DDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLP 564 (703)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~ 564 (703)
.+...++++..+ +++.+...+...+.......+..+.|.+..+ +|+++.+.|+.+....++..+
T Consensus 190 -------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~g~~~~~~~~~~~~ 253 (401)
T PRK11043 190 -------------SQDALTFKQLLK--SKTYLGNVLIFAACSAAFFAWLTGSPFILEQ-MGYSPADIGLSYVPQTIAFLV 253 (401)
T ss_pred -------------chHHHHHHHHHc--ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-cCCCHHHHHHHHHHHHHHHHH
Confidence 000112333333 5666555544444445555566677877765 799999999887777777777
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhc--cccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCccc
Q 005307 565 VNIIVGNYISNIFEERQVLLASEIIVCIGILLS--FHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRG 642 (703)
Q Consensus 565 ~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 642 (703)
++...+ ++.||+++++....+....+++.+.. .......+.+..++...+.+++.+...+...+...+..|+ .+|
T Consensus 254 g~~~~~-~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g 330 (401)
T PRK11043 254 GGYGCR-AALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAIYPIVVAQALRPFPQ--ATG 330 (401)
T ss_pred HHHHHH-HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcc--cCh
Confidence 777766 99999998887655544443332211 1111123344445555666777777788877777777665 489
Q ss_pred ccchhhhHHhhhhhhhhhccceee
Q 005307 643 TYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 643 ~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
++.|+.+. ....+..+++.+.+
T Consensus 331 ~~~g~~~~--~~~~~~~~~~~~~g 352 (401)
T PRK11043 331 KAAALQNT--LQLGLCFLASLLVS 352 (401)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHH
Confidence 88999844 55566666666443
No 62
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.96 E-value=3.2e-26 Score=245.52 Aligned_cols=374 Identities=13% Similarity=0.075 Sum_probs=243.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-V 324 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~ 324 (703)
+|..++...+................|.+.+ +|.++.+.|++.+++.++..++.++.|+++||+|||++++.+.+.. +
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~ 103 (438)
T TIGR00712 25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAA 103 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHH
Confidence 3455555555555555555555556666654 6999999999999999999999999999999999999888886654 6
Q ss_pred HHHHHHhhcc-cchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh---ccc
Q 005307 325 GNTLYAMAYD-LNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF---QTN 398 (703)
Q Consensus 325 ~~~~~~~a~~-~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l---~~g 398 (703)
+.+++++... .++++.+++.|++.|++.|. +....++.|++|+++|++++++++.+..+|..++|.+.+.. ..+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~ 183 (438)
T TIGR00712 104 VMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFND 183 (438)
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhh
Confidence 6666665411 14678888999999999876 77888899999999999999999999999999998877654 357
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcc
Q 005307 399 FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEND 478 (703)
Q Consensus 399 ~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (703)
| |+.|++.++++++..++.++++||+|+.....+ .+. .+.+ .+ +.
T Consensus 184 w----------~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~--~~------------~~ 228 (438)
T TIGR00712 184 W----------HAALYFPAICAIIVALFAFAMMRDTPQSCGLPP--IEE---------YRND--YP------------DD 228 (438)
T ss_pred h----------HHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC--chh---------cccc--cc------------cc
Confidence 7 999999998888877777777888765321100 000 0000 00 00
Q ss_pred ccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhh
Q 005307 479 DQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACL 558 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~ 558 (703)
. .++ .+.+......+.+ ..+.++.++...+..++.....+.+.++.|.|+++..|+++.++++...+.
T Consensus 229 ~----------~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~ 296 (438)
T TIGR00712 229 Y----------NEK-AEQELTAKEIFMQ-YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLY 296 (438)
T ss_pred c----------ccc-cccccchHHHHHH-HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHH
Confidence 0 000 0000000111111 112267777777777777777777888899999988899999999988888
Q ss_pred hhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHH---HHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 005307 559 GLTVLPVNIIVGNYISNIFEERQVLLASEIIV---CIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVM 635 (703)
Q Consensus 559 ~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (703)
+++++++..+.+ ++.||+++++....+..+. .++.+..... ...+.+...+..+..+++.............+..
T Consensus 297 ~~~~~ig~~~~g-~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 374 (438)
T TIGR00712 297 EYAGIPGTLLCG-WMSDKVFKGNRGATGVFFMTLVTIAVIVYWMN-PAGNPLVDMICMIVIGFLIYGPVMLIGLHALELA 374 (438)
T ss_pred HHHHHHHHHHHH-HHHHHhccCcccHHHHHHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhc
Confidence 888888888877 9999996433222222221 1221111111 1122222222222223222111122234567888
Q ss_pred cCCCcccccchhhhHHhhhhhh-hhhccceee-eecccc
Q 005307 636 SSRLSRGTYNGGLLSTEAGTLA-RVIADGTIT-LSGYLG 672 (703)
Q Consensus 636 ~~~~~~g~~~g~~~~~~~~~~g-~~~gp~~~~-~~~~~~ 672 (703)
|++ .+|++.|+.+. .+.+| .++||.+.+ +.+..+
T Consensus 375 ~~~-~~g~~~g~~~~--~~~~gg~~~gp~l~G~l~~~~g 410 (438)
T TIGR00712 375 PKK-AAGTAAGFTGL--FGYLGGSVAASAIVGYTVDFFG 410 (438)
T ss_pred Chh-heeeehhhhch--HHHhhhhhhcchhHHHHHHhcc
Confidence 887 89999998743 55565 467888666 444333
No 63
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.95 E-value=6.5e-27 Score=225.33 Aligned_cols=338 Identities=21% Similarity=0.223 Sum_probs=226.8
Q ss_pred CccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc-hh
Q 005307 279 GAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR-AV 356 (703)
Q Consensus 279 g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~-~~ 356 (703)
+.+....|.+.+.+.+++++.++.+|.++||+|||+++++|++.. +..++.+++ .|+..++++|++.|+.-|. .+
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S---~~F~afv~aR~l~Gi~kgnl~v 140 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS---RNFAAFVLARFLGGIFKGNLSV 140 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhccCchHH
Confidence 446678899999999999999999999999999999999998866 999999999 9997777789999999999 99
Q ss_pred hhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCC
Q 005307 357 NRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPP 435 (703)
Q Consensus 357 ~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~ 435 (703)
+.++++|++++++|+++++.++.++++|.++||.+||++ .+. + .....+|-.|-++..++.........+++||+-
T Consensus 141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~-~--~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL 217 (451)
T KOG2615|consen 141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFS-S--ISGSYPFALPCLLVFILAAGDVTFFPWFLPETL 217 (451)
T ss_pred HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhH-h--hhccCchHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999999999999999999999999999999999999 422 0 001112233334444444443444556789996
Q ss_pred ccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcch
Q 005307 436 LETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSV 515 (703)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (703)
+.+++++...+. ++.. .+. ....+.. .......+.+++.
T Consensus 218 ~~rk~~~~~~~~----~~~~----------------------------------~~~--~~~~~~~-~~~~v~~lrn~p~ 256 (451)
T KOG2615|consen 218 PLRKRNDEHSTL----QEAA----------------------------------DDR--LALLKFA-RIFKVAALRNPPL 256 (451)
T ss_pred cchhhcccccch----hhhh----------------------------------hhh--hhhcchh-hhhhhhhhcCccc
Confidence 654432000000 0000 000 0000000 0000111112222
Q ss_pred -------HHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhh--hHHHHHHH
Q 005307 516 -------KVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFE--ERQVLLAS 586 (703)
Q Consensus 516 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g--~r~~~~~~ 586 (703)
....+..+.+...+..+..+.+.+....+|+++.+.|.+++..|+.+.+.+.... ...++.. .+..+..+
T Consensus 257 ~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~-~~l~~~~~~~~a~l~~~ 335 (451)
T KOG2615|consen 257 LDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALV-PILPRYKGNIKAVLLFS 335 (451)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhcc-ccccccccchhhHHHHH
Confidence 1222333334444444444344444577999999999999999999999888877 5556654 33333333
Q ss_pred HHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 587 EIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 587 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+.++.-. ++.... ........++..+..+......+....++.+..|+. .||+++|+..+ .+.++.++||++.+
T Consensus 336 l~~~vP~-~llls~--~~~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~-qrG~~~Gi~~S--l~alaRaiGPlv~g 409 (451)
T KOG2615|consen 336 LLLIVPA-FLLLSL--ARTPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQS-QRGTLNGIFRS--LGALARAIGPLVSG 409 (451)
T ss_pred HHHHHHH-HHHHhc--cccchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcc-cchHHHHHHHH--HHHHHHHhhhhhhh
Confidence 3333222 222222 233355566667767777777788889999999999 99999999955 88899999999886
Q ss_pred -eecc
Q 005307 667 -LSGY 670 (703)
Q Consensus 667 -~~~~ 670 (703)
+..+
T Consensus 410 ~i~~W 414 (451)
T KOG2615|consen 410 VIFSW 414 (451)
T ss_pred eeEEE
Confidence 4444
No 64
>TIGR00898 2A0119 cation transport protein.
Probab=99.95 E-value=4.5e-27 Score=257.73 Aligned_cols=352 Identities=15% Similarity=0.125 Sum_probs=240.8
Q ss_pred cchhHHHHhcCcc---chhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHH
Q 005307 269 PTADNYSLSLGAA---ATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIG 344 (703)
Q Consensus 269 ~~l~~~~~~~g~s---~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~ 344 (703)
+..|.+.+++|++ +.+.+++.+++.++.+++++++|+++||+|||++++++.+.. ++.++++++ ++++.++++
T Consensus 110 ~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~ 186 (505)
T TIGR00898 110 TFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS---PNYTVFLVF 186 (505)
T ss_pred cccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHc---ccHHHHHHH
Confidence 4567788899998 899999999999999999999999999999999999987655 888999999 999999999
Q ss_pred HHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccchhHHHHHHHHHHH
Q 005307 345 RLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLFQTNFKIYKLTFNEDTLPGWVMALLWLV 422 (703)
Q Consensus 345 r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l~~g~~~~~~~~~~~~~~f~i~~~~~~~ 422 (703)
|++.|++.+. +...+++.|++|+++|+++.++...+..+|.+++|++++.+. +| |+.|++.+++.++
T Consensus 187 r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~-~w----------r~~~~~~~i~~~~ 255 (505)
T TIGR00898 187 RLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP-DW----------RWLQLAVSLPTFL 255 (505)
T ss_pred HHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-HH----------HHHHHHHHHHHHH
Confidence 9999999887 889999999999999999999999999999999999987762 26 8999998888777
Q ss_pred HHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcc
Q 005307 423 YLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVT 502 (703)
Q Consensus 423 ~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (703)
..+.. +++||+|++...+++.+++.+..++..+.+.. ..+ . ...... .++. ........
T Consensus 256 ~~~~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~-~~~-----~-~~~~~~------------~~~~-~~~~~~~~ 314 (505)
T TIGR00898 256 FFLLS-WFVPESPRWLISQGRIEEALKILQRIAKINGK-KLP-----A-EVLSLS------------LEKD-LSSSKKQY 314 (505)
T ss_pred HHHHH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCC-CCC-----H-HHHhhh------------hhhh-hhhccCCC
Confidence 66555 66899987654433333221111100000000 000 0 000000 0000 00001122
Q ss_pred cHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHH
Q 005307 503 SIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQV 582 (703)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~ 582 (703)
.++++++ +|.++...+..++.++.........+.+. ..++.+.. ....+.+++.+++.++.+ ++.||+|||+.
T Consensus 315 ~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~i~~~~~~~-~l~dr~grr~~ 387 (505)
T TIGR00898 315 SFLDLFR--TPNLRKTTLCLMMLWFTTAFSYYGLVLDL-GNLGGNIY---LDLFISGLVELPAKLITL-LLIDRLGRRYT 387 (505)
T ss_pred cHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHhccc-cccCCChH---HHHHHHHHHHHHHHHHHH-HHHHHhCCHHH
Confidence 4555554 66666655555444444333222222222 33444432 233344566666777766 99999999999
Q ss_pred HHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhcc
Q 005307 583 LLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIAD 662 (703)
Q Consensus 583 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp 662 (703)
+.++.++.+++++++.... ....+..++..++.+++.+...+..+.+.++.+|++ .|+++.|.. ...+.+|.+++|
T Consensus 388 ~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~-~r~~~~g~~--~~~~~ig~~i~p 463 (505)
T TIGR00898 388 MAASLLLAGVALLLLLFVP-VDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTV-VRNLGVGVC--STMARVGSIISP 463 (505)
T ss_pred HHHHHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH-HHhhhHhHH--HHHHHHHHHHHh
Confidence 9988888777765443332 122233344445555666667788889999999998 899888887 447889999999
Q ss_pred ceee
Q 005307 663 GTIT 666 (703)
Q Consensus 663 ~~~~ 666 (703)
.+.+
T Consensus 464 ~i~~ 467 (505)
T TIGR00898 464 FLVY 467 (505)
T ss_pred HHHH
Confidence 9554
No 65
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.95 E-value=3.9e-26 Score=238.28 Aligned_cols=314 Identities=22% Similarity=0.321 Sum_probs=270.0
Q ss_pred HHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHH
Q 005307 252 LNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYA 330 (703)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~ 330 (703)
.+.+..+...++.....+..|.+.+++|.++.+.+++.++..++..++.+++|+++||+|||+.+..+.+.. ++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~ 82 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA 82 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence 455677788888899999999999999999999999999999999999999999999999999988887655 8888999
Q ss_pred hhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccccccccccc
Q 005307 331 MAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTF 406 (703)
Q Consensus 331 ~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~ 406 (703)
++ ++++.++++|++.|++.+. +...+++.|++|+++|++++++......+|..+||.+++.+ ..+|
T Consensus 83 ~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------- 152 (352)
T cd06174 83 FA---SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGW------- 152 (352)
T ss_pred Hh---ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhH-------
Confidence 98 9999999999999999887 88999999999999999999999999999999999999998 5567
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCC
Q 005307 407 NEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDD 486 (703)
Q Consensus 407 ~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (703)
++.+++.+++.++..+...+ ++
T Consensus 153 ---~~~~~~~~~~~~~~~~~~~~-~~------------------------------------------------------ 174 (352)
T cd06174 153 ---RWLFLILAILGLLLALLLLF-LL------------------------------------------------------ 174 (352)
T ss_pred ---HHHHHHHHHHHHHHHHHHHH-HH------------------------------------------------------
Confidence 89999888877776655443 22
Q ss_pred CCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHH
Q 005307 487 HDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVN 566 (703)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~ 566 (703)
|.++...+..++..........+.|.+..+.+|.+..+.+...+..+++..++.
T Consensus 175 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 228 (352)
T cd06174 175 --------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGA 228 (352)
T ss_pred --------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 135556666777777778888888999988889999999999999999999999
Q ss_pred HHHHhhhhhhhhhHH-HHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccc
Q 005307 567 IIVGNYISNIFEERQ-VLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYN 645 (703)
Q Consensus 567 ~~~~~~l~~r~g~r~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 645 (703)
.+.+ ++.||+++|+ .+..+..+..++.++.... .+.+...+..++.+++.+...+...+++.+..|++ .+|+..
T Consensus 229 ~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 303 (352)
T cd06174 229 LLGG-LLSDRLGRRRLLLLIGLLLAALGLLLLALA---PSLALLLVALLLLGFGLGFAFPALLTLASELAPPE-ARGTAS 303 (352)
T ss_pred HHHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHH-HHHHHH
Confidence 9888 9999999999 8888888887776554433 33566777788888888888999999999999988 899999
Q ss_pred hhhhHHhhhhhhhhhccceee
Q 005307 646 GGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 646 g~~~~~~~~~~g~~~gp~~~~ 666 (703)
|.. .....+|..++|.+.+
T Consensus 304 ~~~--~~~~~~~~~i~~~i~g 322 (352)
T cd06174 304 GLF--NTFGSLGGALGPLLAG 322 (352)
T ss_pred HHH--HHHHHHHHHHHHHHHH
Confidence 998 4488899999999655
No 66
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.95 E-value=2.3e-25 Score=235.46 Aligned_cols=339 Identities=14% Similarity=0.146 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHHHhhhhhccchhHHH-HhcCccchhhhHHHHHHHH-HHHHHhhhhhhhccccCchhHH-HHHHHHH-HH
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADNYS-LSLGAAATLCGVIIGSMAV-AQVFSSVYFSAWSNRSYLKPLV-FSSIVLL-VG 325 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~i~s~~~l-~~~i~~~~~G~l~Dr~Grr~~l-~~~~~~~-~~ 325 (703)
....++..++..++.++..|.+|.+. +++|.+++++|++.+...+ +..++.+++|+ +||+|||+.+ +.+.+.. ++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~ 95 (393)
T PRK15011 17 STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLA 95 (393)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHH
Confidence 34556668888999898999998875 5689999999999877655 55555555555 9999998764 4555544 77
Q ss_pred HHHHHhhcccchhHHHHHHH-HHHhhcCcc-hhhhHHhhccCChhhh--hhHHHHHHHHHHHHHHHHHHhhhhh--cccc
Q 005307 326 NTLYAMAYDLNSIAVLLIGR-LFCGLGSAR-AVNRRYISDCVPLKLR--MRASAGFVSASALGMACGPALACLF--QTNF 399 (703)
Q Consensus 326 ~~~~~~a~~~~~~~~l~i~r-~l~Gi~~g~-~~~~~~i~~~~~~~~R--~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~ 399 (703)
.++++++ ++++.+++.+ ++.|++... +...+++.++.+++.| +...++.+++.++|.++||++++++ .+||
T Consensus 96 ~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw 172 (393)
T PRK15011 96 CTLFAWN---RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSF 172 (393)
T ss_pred HHHHHHh---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCh
Confidence 7778888 8998876555 445555544 8888888888776655 3455788899999999999999999 6788
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccc
Q 005307 400 KIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDD 479 (703)
Q Consensus 400 ~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (703)
|.+|++.+++.++..+..++.+||.++......
T Consensus 173 ----------~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------- 205 (393)
T PRK15011 173 ----------TVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT------------------------------------- 205 (393)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc-------------------------------------
Confidence 999999988887777776777887653211100
Q ss_pred cccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhh
Q 005307 480 QELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLG 559 (703)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 559 (703)
.+ .+. . ++ ..+..+......++.......+..+.|.|+++.+|+++.++|.+.+...
T Consensus 206 ----------~~---~~~------~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~ 262 (393)
T PRK15011 206 ----------GT---LEA------P---RR-NRRDTLLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAA 262 (393)
T ss_pred ----------cc---ccc------c---cc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 00 000 0 00 0112233333334444445555667888888888999999998887766
Q ss_pred hhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCC
Q 005307 560 LTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRL 639 (703)
Q Consensus 560 ~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (703)
++.+++..+.+ +++||+++|+.+..+.....+.+...... .+.+..++..++.+++.+...+....+.++..|++
T Consensus 263 ~~~i~~~~~~G-~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~g~~~~~~~~~~~~~~p~~- 337 (393)
T PRK15011 263 GLEIPTMLIAG-YFAKRLGKRFLMRVAAVAGVCFYAGMLMA---HSPAILLGLQLLNAIYIGILGGIGMLYFQDLMPGQ- 337 (393)
T ss_pred HHHHHHHHHHH-HHHHHhChHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-
Confidence 66667777767 99999999998776655544443322212 23333444444445555555566667778888765
Q ss_pred cccccchhhhHHhhhhhhhhhccceee-eecc
Q 005307 640 SRGTYNGGLLSTEAGTLARVIADGTIT-LSGY 670 (703)
Q Consensus 640 ~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~ 670 (703)
+|++.+..+. ...+|..++|.+++ +.+.
T Consensus 338 -~g~~~~~~~~--~~~lg~~~g~~l~G~i~~~ 366 (393)
T PRK15011 338 -AGSATTLYTN--TSRVGWIIAGSLAGIVAEI 366 (393)
T ss_pred -cchHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 8888888744 56789999999666 4343
No 67
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.95 E-value=1.1e-25 Score=240.46 Aligned_cols=354 Identities=15% Similarity=0.153 Sum_probs=271.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHH-HHH
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIV-LLV 324 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~-~~~ 324 (703)
+.+.+..++++.+++.++..+....++.++.++..|+..+|++.++..+..++.++++|.++||++||++++.+-+ ..+
T Consensus 8 r~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~ 87 (524)
T PF05977_consen 8 RNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRAL 87 (524)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHH
Confidence 3445667788999999999999999999999999999999999999999999999999999999999999998843 332
Q ss_pred -HHHHHHhh-cccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccc
Q 005307 325 -GNTLYAMA-YDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTN 398 (703)
Q Consensus 325 -~~~~~~~a-~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g 398 (703)
..++..++ ....+.+.+++.-++.|++.+. |+..+++.|++|+++...++++.+...+++.++||.+||.+ .+|
T Consensus 88 ~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G 167 (524)
T PF05977_consen 88 VALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG 167 (524)
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 22222222 1225789999999999999998 99999999999999999999999999999999999999998 667
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcc
Q 005307 399 FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEND 478 (703)
Q Consensus 399 ~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (703)
. .++|++.++..++.++++ ...+.+..+...
T Consensus 168 ~----------~~~f~inalsfl~~i~~l-~~~~~~~~~~~~-------------------------------------- 198 (524)
T PF05977_consen 168 A----------AAAFLINALSFLISILAL-LRWKPPPPPSSL-------------------------------------- 198 (524)
T ss_pred H----------HHHHHHHHHHHHHHHHHH-HHcccccccccc--------------------------------------
Confidence 6 788888877665544333 333322111100
Q ss_pred ccccCCCCCCCCcccccccCCCcccHHHHHHhh--CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHH
Q 005307 479 DQELDNDDHDEDDEDSKITHRPVTSIMSAYRLL--TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLA 556 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~ 556 (703)
...+....+++-.+.. +|.+...++..++..+....+...+|.+..+.+|.++...|++++
T Consensus 199 -----------------~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a 261 (524)
T PF05977_consen 199 -----------------PRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDVLGGGASGYGLLLA 261 (524)
T ss_pred -----------------chhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHH
Confidence 0000112233333332 566666666566666666666777899999999999999999999
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhcc
Q 005307 557 CLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMS 636 (703)
Q Consensus 557 ~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (703)
..++++++++++.+ ++.+++++++++..+.++.+++++.+... .+.+...+..++.|++.........+.++..+|
T Consensus 262 ~~gvGai~Gal~~~-~l~~~~~~~~lv~~~~~~~a~~~~~lal~---~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P 337 (524)
T PF05977_consen 262 AFGVGAILGALLLP-RLRRRLSSRRLVLLASLLFALALLLLALS---PSFWLALIALFLAGAAWIIANSSLNTLVQLSVP 337 (524)
T ss_pred HHHHHHHHHHHHHH-HhhcccCcchhhHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999988 89999998888888877777765444333 456666777778888888888888899999999
Q ss_pred CCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 637 SRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 637 ~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
++ .+|++++++.. ....+..+|..+.| +.+.++
T Consensus 338 ~~-~~GRv~si~~~--~~~g~~~lGsll~G~la~~~g 371 (524)
T PF05977_consen 338 DW-VRGRVFSIYQM--VFFGGMPLGSLLWGFLADHFG 371 (524)
T ss_pred HH-HHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC
Confidence 99 99999999843 55677778887665 445454
No 68
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.95 E-value=2.5e-25 Score=234.35 Aligned_cols=337 Identities=13% Similarity=0.034 Sum_probs=245.1
Q ss_pred HHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchh----HHHHHHHHHHHHHHHHh
Q 005307 256 NTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKP----LVFSSIVLLVGNTLYAM 331 (703)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~----~l~~~~~~~~~~~~~~~ 331 (703)
..+....+.++..|.+|.+.+++|.|..++|++.+++.++..++++++|+++||+||+. .+.++. .......+..
T Consensus 12 ~~~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~-~~~~~~~~~~ 90 (382)
T PRK11128 12 SYFGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLT-LLFAVAFWFG 90 (382)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHH-HHHHHHHHHh
Confidence 35566677899999999999999999999999999999999999999999999999842 222221 1122233344
Q ss_pred hcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccc
Q 005307 332 AYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFN 407 (703)
Q Consensus 332 a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~ 407 (703)
+ +++|.+++.|++.|++.+. +...+++.++ .++|+++++......++|.++||++++++ .+||
T Consensus 91 ~---~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~-------- 157 (382)
T PRK11128 91 A---HSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGE-------- 157 (382)
T ss_pred c---ccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCh--------
Confidence 5 8899999999999998765 7777777776 45688899999999999999999999999 6798
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCC
Q 005307 408 EDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDH 487 (703)
Q Consensus 408 ~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (703)
|.+|++.++..++..+ ..+..||+++...+
T Consensus 158 --~~~f~~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------------------------------- 187 (382)
T PRK11128 158 --QAILWILTAGVASMLL-GQLLRPTIMPQGES----------------------------------------------- 187 (382)
T ss_pred --hHHHHHHHHHHHHHHH-HHHccCCCCCcccc-----------------------------------------------
Confidence 8999887765444433 23334443211000
Q ss_pred CCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHH
Q 005307 488 DEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNI 567 (703)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 567 (703)
.+ ........++++++ +|+++...+..++..........+.|.|..+ .|++..+.|...++..++.++...
T Consensus 188 --~~----~~~~~~~~~~~i~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~ 258 (382)
T PRK11128 188 --RQ----QESAGWPAWKALLK--EPTVWRFLLCVSLLQGSHAAYYGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFA 258 (382)
T ss_pred --cc----ccccccchHHHHHc--ChhHHHHHHHHHHHHHHhHhHHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHH
Confidence 00 00001224455555 7888877777777777776777788888865 799999999998888787777777
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchh
Q 005307 568 IVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGG 647 (703)
Q Consensus 568 ~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 647 (703)
+.+ ++.||+++++.+..+.++.+++.++.... .+.+..++..++.+++.+...+....++.+..++ ++++..+.
T Consensus 259 ~~g-~l~~r~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 332 (382)
T PRK11128 259 FSN-RLFRRWSARDLLLLSAICGVVRWGLMGST---TALPWLIVIQILHCGTFTVCHLAAMRYIAARPGS--EVIRLQAL 332 (382)
T ss_pred HHH-HHHHHCCHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHh--hhHHHHHH
Confidence 777 99999999999888888877775544322 4556667777888888888888888888876444 46777776
Q ss_pred hhHHhhhhhhhhhccceee-eecccc
Q 005307 648 LLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 648 ~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
.+. ....+|..+||.+++ +.+..+
T Consensus 333 ~~~-~~~~~g~~ig~~i~G~l~~~~g 357 (382)
T PRK11128 333 YSA-LAMGGSIAIMTVLSGFLYQHLG 357 (382)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhcc
Confidence 532 244567788898666 445444
No 69
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.95 E-value=4.6e-25 Score=238.44 Aligned_cols=355 Identities=13% Similarity=0.085 Sum_probs=248.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhcccc-----CchhH-HHHH
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRS-----YLKPL-VFSS 319 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-----Grr~~-l~~~ 319 (703)
+|+....+++..+..++..+...+.+|.+.++.|.+..++|.+ +...... ++.+++|+++||+ |||+. ++++
T Consensus 10 ~~~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~ 87 (491)
T PRK11010 10 QQPNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLAT 87 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHH
Confidence 3445666777777888888899999999999999999999987 3333443 6899999999999 98875 5566
Q ss_pred HHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-
Q 005307 320 IVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF- 395 (703)
Q Consensus 320 ~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l- 395 (703)
.+.. ++.+.+++..+.++++.+.+.+++.|++.+. +...+++.|++|+++|+++.++...+..+|.++|+.+++++
T Consensus 88 ~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~ 167 (491)
T PRK11010 88 QLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLA 167 (491)
T ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544 6666666654346889999999999998777 88999999999999999999999999999999999999988
Q ss_pred c--ccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcc
Q 005307 396 Q--TNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQ 473 (703)
Q Consensus 396 ~--~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (703)
. +|| |.+|++.+++.++..+..+ +.||+++.....
T Consensus 168 ~~~~GW----------r~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~-------------------------------- 204 (491)
T PRK11010 168 DRYLGW----------QGMYWLMAALLIPCIIATL-LAPEPTDTIPVP-------------------------------- 204 (491)
T ss_pred hcccCH----------HHHHHHHHHHHHHHHHHHH-hcCCCccccccc--------------------------------
Confidence 4 477 9999999988776655444 467764321100
Q ss_pred cCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHH
Q 005307 474 KDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAI 553 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 553 (703)
.. .......+++++++ ++..+...+..++..........+.++|+.+.+|++..+.|+
T Consensus 205 ----------------~~----~~~~~~~~l~~~~~--~~~~~~~ll~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~ 262 (491)
T PRK11010 205 ----------------KT----LEQAVVAPLRDFFG--RNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGL 262 (491)
T ss_pred ----------------cc----hhhhHHHHHHHHHc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 00 00000123444443 566665555555665666666667788887778999999999
Q ss_pred HHHhhh-hhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhc--cccccccchhHHHHHHHHHHhhhhhhhHHHHHH
Q 005307 554 FLACLG-LTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLS--FHILVPYSVPQYVGSALITFVAAEVLEGVNLSL 630 (703)
Q Consensus 554 ~~~~~~-~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (703)
.....+ ++.+++..+.+ +++||+|+|+.+.++.++.+++.+.. .... ..+.+...+..++..+..+...+...++
T Consensus 263 ~~~~~g~i~~iiG~ll~G-~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-~~~~~~l~~~~~l~~~~~g~~~~~~~a~ 340 (491)
T PRK11010 263 VNKTLGLLATIVGALYGG-ILMQRLSLFRALMIFGILQGVSNAGYWLLSIT-DKNLYSMGAAVFFENLCGGMGTAAFVAL 340 (491)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 875444 56666666656 99999999887776655444433221 1111 1233333334444444455555667788
Q ss_pred HHhhccCCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 631 LSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 631 ~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
..+..+++ ..|+..|..++ ...+|..+++.+.+ +.+..|
T Consensus 341 ~~~l~~~~-~~~t~~gl~~s--~~~lg~~~~~~~~G~l~~~~G 380 (491)
T PRK11010 341 LMTLCNKS-FSATQFALLSA--LSAVGRVYVGPVAGWFVEAHG 380 (491)
T ss_pred HHHHcCCC-CcHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhC
Confidence 88888888 77888888744 66788877776555 445444
No 70
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2e-27 Score=235.90 Aligned_cols=365 Identities=15% Similarity=0.127 Sum_probs=253.0
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 005307 244 RYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL 323 (703)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~ 323 (703)
...++.+.++++.+.+..++.+.+..+++.....+|++++..|++++.+.+.+.+++|++|+++|||.||.++.+|+.++
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW 108 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIW 108 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred -HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccc
Q 005307 324 -VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTN 398 (703)
Q Consensus 324 -~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g 398 (703)
++.++++++ ..+|+++++|.+.|+|.+. ++++++++|.+|.++|++++++++.+..+|..+|.+.|+.+ ..+
T Consensus 109 ~~Av~~~~fs---~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~ 185 (493)
T KOG1330|consen 109 TLAVFASGFS---NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTF 185 (493)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCcc
Confidence 999999999 9999999999999999877 99999999999999999999999999999999999999988 445
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcc
Q 005307 399 FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEND 478 (703)
Q Consensus 399 ~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (703)
| |||.|++.++++++..++..++.+|+++...++.
T Consensus 186 ~---------Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~------------------------------------ 220 (493)
T KOG1330|consen 186 W---------WRWAFRGSAVLGVIVGLLVFLFVREPERGARDEV------------------------------------ 220 (493)
T ss_pred c---------eEEEEEeehHHHHHHHHHHHhhccCccccccccc------------------------------------
Confidence 3 5999999999999999999999999886432200
Q ss_pred ccccCCCCCCCCcccccccCCCcccHHHHHHhh-CcchHHHHHHHHHHHHHHHHHHhhhhHHhhh---hccccchhHHHH
Q 005307 479 DQELDNDDHDEDDEDSKITHRPVTSIMSAYRLL-TPSVKVQLFVYFMLKYAMEILLAESSVITEH---YFIWSTSRVAIF 554 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~g~~ 554 (703)
+.+..........+++++.+. ++.+....+.+....+....+.-+.|.+... ..|.+....-++
T Consensus 221 ------------~~~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~if 288 (493)
T KOG1330|consen 221 ------------DGENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIF 288 (493)
T ss_pred ------------ccCCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhh
Confidence 000000112233466666654 3555555555555555555544445544433 234444444334
Q ss_pred HHhhhhhhhhHHHHHHhhhhhhhhhH----HHHHHHHHHH------HHHHhhccccccccchhHHHHHHHHHHhhhhhhh
Q 005307 555 LACLGLTVLPVNIIVGNYISNIFEER----QVLLASEIIV------CIGILLSFHILVPYSVPQYVGSALITFVAAEVLE 624 (703)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~l~~r~g~r----~~~~~~~~~~------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (703)
..+..+++.+|..+ |+.++||+.+. ....+..+.. ++.++.++.. .........+.+++++.......
T Consensus 289 g~vt~~~G~lGvl~-Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~-~~~~s~~~~~il~~~g~~~~~~~ 366 (493)
T KOG1330|consen 289 GGVTCAGGSLGVLF-GGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPA-FTSSSMIFGLILFLVGETISWFN 366 (493)
T ss_pred hhHHHhhchhhhee-hHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhcc
Confidence 44444444444333 44666664321 1112111111 1111111111 11222233333344444443333
Q ss_pred -HHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 625 -GVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 625 -~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
.....++.+++|++ +|.++.+... .+...+|.+-+|.+.+ +.+.+.
T Consensus 367 ~a~n~~i~l~vV~p~-~Rt~a~a~~~-~~~h~fgd~~~p~ivGilsd~l~ 414 (493)
T KOG1330|consen 367 WATNNPIFLEVVPPS-RRTTAYALDT-VFEHIFGDAASPYIVGILSDKLR 414 (493)
T ss_pred cccccceeeEecCcc-cccHHHHHHH-HHHHHhccCCCcceehhHHHHhh
Confidence 34446778888998 8888887764 3356677788886666 444443
No 71
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.95 E-value=7.6e-25 Score=231.24 Aligned_cols=354 Identities=11% Similarity=0.052 Sum_probs=251.2
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNT 327 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~ 327 (703)
.+.++++..++.++..++..|.+|.+.+++|.++.+.|++.+.+.++.++++++.|+++||+|||+++++++++. ++.+
T Consensus 4 ~~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~ 83 (410)
T TIGR00885 4 PFALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAF 83 (410)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 345667777888888899999999999999999999999999999999999999999999999999999997755 7777
Q ss_pred HHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-ccccc----
Q 005307 328 LYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFK---- 400 (703)
Q Consensus 328 ~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~---- 400 (703)
++..+...++++.++++|++.|+|.|. +....++.++.|+++|++.+++.+...++|..+||.+++.+ ..+..
T Consensus 84 l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~ 163 (410)
T TIGR00885 84 LFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQ 163 (410)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchh
Confidence 755432226899999999999999888 88889999999999999999999999999999999999877 22100
Q ss_pred -----ccc--------cccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccc
Q 005307 401 -----IYK--------LTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLL 467 (703)
Q Consensus 401 -----~~~--------~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (703)
..+ ....+||++|++.+++.++..++.. +.+.++.+..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~--------------------------- 215 (410)
T TIGR00885 164 DVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSD--------------------------- 215 (410)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCccc---------------------------
Confidence 000 0123469999988887766544433 22322111000
Q ss_pred cchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhc-cc
Q 005307 468 NSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYF-IW 546 (703)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~ 546 (703)
. .+.......+.+.+ +|.++...+..+++........++++.|..+.. +.
T Consensus 216 ----------------------~-----~~~~~~~~~~~~~~--~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~ 266 (410)
T TIGR00885 216 ----------------------A-----KQISFSASLSRLAR--IRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGM 266 (410)
T ss_pred ----------------------c-----ccccchhhHHHHHh--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 0 00000112233333 677777777777766666677788888886532 33
Q ss_pred cchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHH
Q 005307 547 STSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGV 626 (703)
Q Consensus 547 s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (703)
+....+...+....+..+++++.+ ++.||+++|+.+.++..+.++++++.... .+. ...+..++.+++.+.++|.
T Consensus 267 ~~~~a~~~~~~~~~~~~vGR~~~~-~l~~r~~~~~~l~i~~~~~~~~~ll~~~~---~~~-~~~~~l~~~glf~s~~fp~ 341 (410)
T TIGR00885 267 TAGFAANYNIGAMVIFFISRFIGT-WLISYLAAHKVLMAYAIIGMALCLGSIFA---GGH-VGLYCLTLCSAFMSLMFPT 341 (410)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCHHHHHHHHHHHHHHHHHHHHHc---CCh-HHHHHHHHHHHHHHHHHHH
Confidence 444445455555566677777766 99999999998877777766665544333 122 2345566667888888899
Q ss_pred HHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee-eec
Q 005307 627 NLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSG 669 (703)
Q Consensus 627 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~ 669 (703)
.+++..+..+++ ......++. ...+|++++|.+.+ +.+
T Consensus 342 i~sl~~~~~g~~-~~~~s~~l~----~~~~Gga~~p~l~G~~~d 380 (410)
T TIGR00885 342 IYGIALKGLGQD-TKYGAAGLV----MAIIGGGIVPPLQGFIID 380 (410)
T ss_pred HHHHHHhhhhhh-hhhhHHHHH----HHHhccchHHHHHHHHHH
Confidence 999999999987 332223332 23388999999666 444
No 72
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.95 E-value=6.6e-26 Score=232.04 Aligned_cols=382 Identities=25% Similarity=0.423 Sum_probs=282.1
Q ss_pred ccccccchhHHHHHHHHHHHHHHHhhhhhccchhHHHHh--cCccchhhhHHHHHHHHHHHHHhhhhhhhccccC--chh
Q 005307 239 QDVEQRYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLS--LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSY--LKP 314 (703)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~G--rr~ 314 (703)
...+++.+|+.+++..+..++..+..+++.+..-+|.++ .+.+.+..||+.++..++.++++|.+|+++.|.| |||
T Consensus 25 ~~~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~P 104 (488)
T KOG2325|consen 25 PLDERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKP 104 (488)
T ss_pred cccccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccC
Confidence 344567899999999999999999999999999999999 6788899999999999999999999999999988 777
Q ss_pred HHHHHHHHHHHHHHH-Hhhcccc-hhHHHHHHHHHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHh
Q 005307 315 LVFSSIVLLVGNTLY-AMAYDLN-SIAVLLIGRLFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPAL 391 (703)
Q Consensus 315 ~l~~~~~~~~~~~~~-~~a~~~~-~~~~l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i 391 (703)
++...++.++|++++ ++++..+ ..+.++++|++.|+|.|. .+..+|+++....++|.++++....+..+|.++||.+
T Consensus 105 li~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~ 184 (488)
T KOG2325|consen 105 LIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTI 184 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHH
Confidence 777777888999999 5654445 789999999999999998 9999999999999999999999999999999999998
Q ss_pred hhhh----cccccccc-cccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCccc
Q 005307 392 ACLF----QTNFKIYK-LTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLL 466 (703)
Q Consensus 392 ~~~l----~~g~~~~~-~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (703)
+..+ .-|+.+.+ ..+|.|..+-|++++++++.++++.++++|.++...++...++
T Consensus 185 q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~-------------------- 244 (488)
T KOG2325|consen 185 QLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV-------------------- 244 (488)
T ss_pred HHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc--------------------
Confidence 8877 45676555 8999999999999999999999999999998875543110000
Q ss_pred ccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccc
Q 005307 467 LNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIW 546 (703)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 546 (703)
++++ . +.+....++.. ....+.+++..+...+......+..+.+....++|
T Consensus 245 -------~~~~------------~--~~~~~~~~~~d--------~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w 295 (488)
T KOG2325|consen 245 -------EEEK------------S--DIEKVKKPKLD--------WVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGW 295 (488)
T ss_pred -------hhhc------------c--chhhhccCChh--------HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhcc
Confidence 0000 0 00001111111 23345566666677777777788888888888999
Q ss_pred cchhH----HHHHHhhhhhhhhHHHHHHhhhh-hhhhhHHHHHHHHHHHHHHHh-hccccccc-----------------
Q 005307 547 STSRV----AIFLACLGLTVLPVNIIVGNYIS-NIFEERQVLLASEIIVCIGIL-LSFHILVP----------------- 603 (703)
Q Consensus 547 s~~~~----g~~~~~~~~~~~~~~~~~~~~l~-~r~g~r~~~~~~~~~~~i~~~-~~~~~~~~----------------- 603 (703)
+..++ |...++.++..++..+... ... .++.+|..+..+......+.. ..+++...
T Consensus 296 ~~~~av~~~gi~~~~~g~ls~~~~l~~~-f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~ 374 (488)
T KOG2325|consen 296 TGSEAVLYNGITLSISGILSVILLLLYI-FTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFE 374 (488)
T ss_pred ccchHHHhhhhHHHHHHHHHHHHHHHHH-HHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcc
Confidence 88776 5555666666655555544 222 344555555555333333322 22222100
Q ss_pred ----------cchhHHHH-HHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee-eeccc
Q 005307 604 ----------YSVPQYVG-SALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYL 671 (703)
Q Consensus 604 ----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~ 671 (703)
.+.+.+++ ..+++|.+...+.....++.++...+. .+|+..|++ ...++.+..+||++.. ++...
T Consensus 375 ~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~-~q~~~qg~~--~~~~s~~~~~~~~~~t~~~~~~ 451 (488)
T KOG2325|consen 375 EYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPR-DQGTMQGVF--SISGSIARVVGPIFSTAIFTLS 451 (488)
T ss_pred cchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCc-cccceeEEE--EeccchhhhhhHHHHhhhHHhc
Confidence 01222222 345556777777788899999999999 999999998 6688999999999776 34444
Q ss_pred cC
Q 005307 672 GE 673 (703)
Q Consensus 672 ~~ 673 (703)
|.
T Consensus 452 g~ 453 (488)
T KOG2325|consen 452 GP 453 (488)
T ss_pred Cc
Confidence 43
No 73
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.94 E-value=8.2e-26 Score=233.62 Aligned_cols=345 Identities=14% Similarity=0.127 Sum_probs=232.5
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHH
Q 005307 284 LCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRY 360 (703)
Q Consensus 284 ~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~ 360 (703)
..+.+.+++.+|.++|+++.|.++||+|||..++++.+.. ++.++..++...+++.+++++|++.|+..|. ...+.|
T Consensus 61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmy 140 (485)
T KOG0569|consen 61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMY 140 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3567889999999999999999999999999888886544 6666655554448999999999999999998 889999
Q ss_pred hhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh----cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCc
Q 005307 361 ISDCVPLKLRMRASAGFVSASALGMACGPALACLF----QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPL 436 (703)
Q Consensus 361 i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l----~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~ 436 (703)
+.|..|.+.||....+.+.+..+|.++|..++.-- ...| .+.+.+..+++++.++. +.++||+|+
T Consensus 141 l~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W----------~~l~~~~~i~~~~~l~~-l~~~PESPk 209 (485)
T KOG0569|consen 141 LTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLW----------PYLLAFPLIPALLQLAL-LPFLPESPK 209 (485)
T ss_pred HhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcch----------HHHHHHHHHHHHHHHHH-HhcCCCCcc
Confidence 99999999999999999999999999997776543 3345 67777777666666544 456899999
Q ss_pred cccc-cccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhh--Cc
Q 005307 437 ETKE-NLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLL--TP 513 (703)
Q Consensus 437 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 513 (703)
..-. +++.++|.+..+.....++.. ++.++..+ ..++++.......+++++++.. ++
T Consensus 210 ~Ll~~k~~~~~A~~sl~~y~G~~~~~-----------~~~e~~~~---------e~~~~~~~~~~~~sl~~~~~~~~lR~ 269 (485)
T KOG0569|consen 210 YLLIKKGDEEEARKALKFYRGKEDVE-----------AEIEEMLR---------EIEEEELEKKKQISLRQLLKNPTLRR 269 (485)
T ss_pred hHHHHcCCHHHHHHHHHHHhCCCcch-----------hHHHHHHH---------HHHHhccccccCCcHHHHhcCcchhH
Confidence 8765 444444432222211111000 00000000 0000011112344666666632 33
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Q 005307 514 SVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIG 593 (703)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~ 593 (703)
+....+...+.+.+.......++...+-...|++..++-+.....+++..+..++.. +++||+|||++++.+..++.+.
T Consensus 270 ~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~-~lid~~gRRpLll~~~~~~~~~ 348 (485)
T KOG0569|consen 270 PLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSP-FLIDRLGRRPLLLISLSLMAVA 348 (485)
T ss_pred HHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHH
Confidence 444555566666666555555566666666799999999999899999999888867 9999999999999998888877
Q ss_pred Hhhccccc---ccc-chhH--HHHHHHHHHhhhh-hhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccc
Q 005307 594 ILLSFHIL---VPY-SVPQ--YVGSALITFVAAE-VLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADG 663 (703)
Q Consensus 594 ~~~~~~~~---~~~-~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~ 663 (703)
.+++.... ... +|.. .++..+++.++++ ..+|+.+-+.+|.+|+. .|.++.+.. .+...+++++-..
T Consensus 349 ~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~-~R~aa~s~~--~~~~w~~~fiv~~ 422 (485)
T KOG0569|consen 349 LLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQS-ARSAAQSVA--TAVNWLSNFIVGF 422 (485)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCcc-chHHHHHHH--HHHHHHHHHHHHH
Confidence 65432211 011 2222 2344444444444 34688889999999999 787666654 3344444444433
No 74
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.94 E-value=6.2e-25 Score=233.18 Aligned_cols=346 Identities=15% Similarity=0.099 Sum_probs=236.6
Q ss_pred HHHHhhhhhccchhHHHHhcC--ccchhhhHHHHH-----HHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHH
Q 005307 259 LYMVNTYVIVPTADNYSLSLG--AAATLCGVIIGS-----MAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYA 330 (703)
Q Consensus 259 ~~~~~~~~~~~~l~~~~~~~g--~s~~~~g~i~s~-----~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~ 330 (703)
++.++.....+..+.+.+++. .++.+.+++.+. ..++..+++++.|+++||+|||++++.+.+.. ++.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~ 83 (394)
T TIGR00883 4 VEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG 83 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 344555555555666666642 455666665443 33344578999999999999999999987755 8889999
Q ss_pred hhcccchhH--------HHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-c-cc
Q 005307 331 MAYDLNSIA--------VLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-Q-TN 398 (703)
Q Consensus 331 ~a~~~~~~~--------~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~-~g 398 (703)
++ ++++ .++++|+++|++.+. +...++++|++|+++|++..++...+..+|.+++|++++.+ . .+
T Consensus 84 ~~---~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~ 160 (394)
T TIGR00883 84 LL---PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG 160 (394)
T ss_pred hC---CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 98 7654 588999999999877 88899999999999999999999999999999999887765 2 11
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcc
Q 005307 399 FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEND 478 (703)
Q Consensus 399 ~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (703)
. ......+||++|++.+++.++..+ ....+||+++...+++
T Consensus 161 ~--~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------------------------------ 201 (394)
T TIGR00883 161 D--DALLEWGWRIPFLVSAVLVLIGLY-LRRNLEETPVFEKAQE------------------------------------ 201 (394)
T ss_pred H--HHhhccchHHHHHHHHHHHHHHHH-HHHhcCCChhHHHHHh------------------------------------
Confidence 0 000112349999887766655443 2334566543221100
Q ss_pred ccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhh
Q 005307 479 DQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACL 558 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~ 558 (703)
.......+.++..+...+.++......++..........+.|.|+.+.+|++..+.+....+.
T Consensus 202 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 264 (394)
T TIGR00883 202 -----------------KHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLS 264 (394)
T ss_pred -----------------ccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Confidence 000011233334331122366666666666667777778889999888899999999988888
Q ss_pred hhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH-hhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccC
Q 005307 559 GLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGI-LLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSS 637 (703)
Q Consensus 559 ~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (703)
+++..++..+.+ ++.||+|+|+.+..+..+..+.. .+........+.+...+..++.+++.+...+...+++++.+|+
T Consensus 265 ~~~~~~~~~~~g-~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~ 343 (394)
T TIGR00883 265 LILFFITIPLSG-ALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPT 343 (394)
T ss_pred HHHHHHHHHHHH-HHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCc
Confidence 888888888877 99999999997765444333222 1111111123344555556666777777888889999999999
Q ss_pred CCcccccchhhhHHhhhhhhhhhccceee
Q 005307 638 RLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 638 ~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+ .|+++.|... .....+|..++|.+++
T Consensus 344 ~-~~~~~~~~~~-~~~~~~g~~~~p~~~g 370 (394)
T TIGR00883 344 E-VRYTGASLAY-NLAGAIFGGFAPYIAA 370 (394)
T ss_pred c-ceeeEeeehh-HhHHHHHhhHHHHHHH
Confidence 8 8898888742 2345678888888665
No 75
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.94 E-value=2e-24 Score=228.86 Aligned_cols=356 Identities=14% Similarity=0.095 Sum_probs=239.6
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGN 326 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~ 326 (703)
.++.+....++...+.+...|.+|.+..+ +|.++.+.|++.+++.++..++++++|+++||+|||+.++.+.+.. ++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~ 82 (396)
T TIGR00882 3 NFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLF 82 (396)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 34566677788888888999999988765 8999999999999999999999999999999999999988764433 322
Q ss_pred HH---HHhhcc--cchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-ccc
Q 005307 327 TL---YAMAYD--LNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTN 398 (703)
Q Consensus 327 ~~---~~~a~~--~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g 398 (703)
.. +.+... .+.+..+++++++.|++.+. +....++.+..+ +++..+|......++|.++||++++.+ ..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~ 160 (396)
T TIGR00882 83 APFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSID 160 (396)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhccC
Confidence 22 222200 01234567778888888765 677777766533 345677888888899999999999988 778
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcc
Q 005307 399 FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEND 478 (703)
Q Consensus 399 ~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (703)
| +.+|++.++++++..++.+...|++++++..++ .
T Consensus 161 ~----------~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------------------------------- 195 (396)
T TIGR00882 161 P----------QIVFWLGSGFALILMLLLMFAKPKAPSSATVAN----A------------------------------- 195 (396)
T ss_pred c----------hHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhc----c-------------------------------
Confidence 7 899999988888776655544444432111000 0
Q ss_pred ccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhc---cccchhHHHHH
Q 005307 479 DQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYF---IWSTSRVAIFL 555 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~g~~~ 555 (703)
.+ . .....+..+++++.+ +|+++..++..++...........++.|+.+.+ +.+....|...
T Consensus 196 -----------~~-~-~~~~~~~~~~~~~l~--~~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~ 260 (396)
T TIGR00882 196 -----------LG-A-NASAFSLKLALELFR--QRKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVT 260 (396)
T ss_pred -----------cc-c-ccCCCCHHHHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 00 0 000011122333333 777766666655555555555556777776654 45556678888
Q ss_pred HhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 005307 556 ACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVM 635 (703)
Q Consensus 556 ~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (703)
++..+...++....+ ++.||+|+|+.+.++..+.+++..+.... .+.+..++..++.+++..........+..+..
T Consensus 261 ~~~~i~~~~~~~~~g-~l~~r~g~~~~l~~~~~l~~l~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~ 336 (396)
T TIGR00882 261 TMGELLNALIMFCAP-LIINRIGAKNALLIAGTIMSVRIIGSSFA---TTALEVVILKMLHAFEVPFLLVGCFKYITSQF 336 (396)
T ss_pred HHHHHHHHHHHHHHH-HHHHHhccchhHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888888888887777 99999999999888887777765443322 33444555566666666555445555666666
Q ss_pred cCCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 636 SSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 636 ~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
+++ .+++..+... +....+|++++|.+++ +.+..|
T Consensus 337 ~~~-~~at~~~~~~-~~~~~lg~~~~~~l~G~l~~~~G 372 (396)
T TIGR00882 337 DVR-LSATIYLIGF-QFAKQLAMIFLSTLAGNMYDSIG 372 (396)
T ss_pred Ccc-eEEEeehHHH-HHHHHHHHHHHHHhHHHHHHhcc
Confidence 766 5665554421 3477899999999666 445444
No 76
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.94 E-value=3e-25 Score=267.86 Aligned_cols=358 Identities=11% Similarity=0.026 Sum_probs=246.7
Q ss_pred HHHHHHHHHHHHHHhh-hhhccchhHHHHhcCcc--chhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 005307 249 SLLLNLVNTFLYMVNT-YVIVPTADNYSLSLGAA--ATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-V 324 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~s--~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~ 324 (703)
.+..++++.++..++. .....+.+.+..+++.+ ....+++.+++.++.+++++++|+++||+|||++++++.++. +
T Consensus 10 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~ 89 (1146)
T PRK08633 10 GFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVG 89 (1146)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHH
Confidence 3344445555544443 33333444555556554 455799999999999999999999999999999998875432 3
Q ss_pred HH---HHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cc-
Q 005307 325 GN---TLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QT- 397 (703)
Q Consensus 325 ~~---~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~- 397 (703)
+. +++..+ ++++.++++|+++|++.+. ++..++++|++|+++|++++|+..++..+|.++||++++++ ..
T Consensus 90 ~~~~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~ 166 (1146)
T PRK08633 90 LTLLIVLAYYL---GWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESV 166 (1146)
T ss_pred HHHHHHHHHHH---ccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33 334445 7899999999999999887 88899999999999999999999999999999999999998 33
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCc
Q 005307 398 NFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEN 477 (703)
Q Consensus 398 g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (703)
++. ....+.+|++.+.+..+..++..++..+.+|+++....... + .
T Consensus 167 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------------------------------~ 212 (1146)
T PRK08633 167 NGN-TPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVF---D------------------------------K 212 (1146)
T ss_pred ccc-cccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccc---c------------------------------c
Confidence 100 00000112444444443333333344445677654322100 0 0
Q ss_pred cccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccch-hHHHHHH
Q 005307 478 DDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTS-RVAIFLA 556 (703)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~-~~g~~~~ 556 (703)
... .........++.+++ ++.++..++..++..+....+..++|.|+.+.+|++.. ..|++++
T Consensus 213 ------------~~~--~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~ 276 (1146)
T PRK08633 213 ------------KKY--LFPKLLWRNLKLLRS--DRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLA 276 (1146)
T ss_pred ------------ccc--ccHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHH
Confidence 000 000000112222332 66667666666666666667777889999998999998 8999999
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhcc
Q 005307 557 CLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMS 636 (703)
Q Consensus 557 ~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (703)
+.+++.+++.++.+ ++.||+++++.+.++.++++++++++... .+.+..++..++++++.+...+...+++.+..|
T Consensus 277 ~~~ig~~~g~~~~g-~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p 352 (1146)
T PRK08633 277 ASAIGIGIGSLLAG-RLSGRHIELGLVPLGALGLALSLFLLPTA---PSLASVLVLFFLFGFSAGLFIVPLNALIQFRAP 352 (1146)
T ss_pred HHHHHHHHHHHHHH-HHhCCceEccchhHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHhhHHHHHHHhhcCC
Confidence 99988888888877 99999999888877777776665444333 345556666777788888888888899999999
Q ss_pred CCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 637 SRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 637 ~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
++ .+|+++|+.+ ++..+|.++++.+++
T Consensus 353 ~~-~rg~~~~~~~--~~~~lg~~~~~~~~~ 379 (1146)
T PRK08633 353 EK-ELGKVLAANN--FLQNVGMLLFLALTT 379 (1146)
T ss_pred cc-chhhhhHHHH--HHHHHHHHHHHHHHH
Confidence 98 8999999874 366677777776554
No 77
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.94 E-value=4.4e-25 Score=265.12 Aligned_cols=315 Identities=11% Similarity=0.019 Sum_probs=230.6
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHH---HHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hh
Q 005307 283 TLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSS---IVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AV 356 (703)
Q Consensus 283 ~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~---~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~ 356 (703)
...++..+++.++.+++++++|+++||+|||+++... .+.. +..+.+... +++++++++|+++|++.+. ++
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~---~s~~~l~~~~~l~gi~~a~~~p~ 128 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL---NSVPLLFAALFLMGIHSALFGPI 128 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhhchH
Confidence 5678899999999999999999999999999976432 2222 333333445 7999999999999999887 99
Q ss_pred hhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCC
Q 005307 357 NRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREP 434 (703)
Q Consensus 357 ~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~ 434 (703)
..+++.+++|+++|++++|+.+++.++|.++||+++|++ ..+| ++.|++.+++.++. +++++.+|++
T Consensus 129 ~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~ 197 (1140)
T PRK06814 129 KYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNF----------VILVALLMGIAVLG-WLASLFIPKT 197 (1140)
T ss_pred HHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhcccc----------HHHHHHHHHHHHHH-HHHHhhCCCC
Confidence 999999999999999999999999999999999999999 5666 78874444444443 3444556665
Q ss_pred CccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcc
Q 005307 435 PLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPS 514 (703)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (703)
+......+ ... .........++.+++ ++.
T Consensus 198 ~~~~~~~~-----------------------------------------------~~~--~~~~~~~~~~~~~~~--~~~ 226 (1140)
T PRK06814 198 GNAAPDLK-----------------------------------------------IDR--NIIRSTITLLKYAKA--DKR 226 (1140)
T ss_pred CCCCCCCe-----------------------------------------------ecc--chHHHHHHHHHHHhc--Cch
Confidence 43211100 000 000000112333333 778
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 005307 515 VKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGI 594 (703)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~ 594 (703)
++..++..++.++....+.+++|.|+.+.+|.++...|++++..+++.++++++.+ ++.++..+++.+..+.++.+++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g-~l~~~~~~~~~~~~~~~~~~~~~ 305 (1140)
T PRK06814 227 IWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLAS-KLSEGRITLLYVPIGALLMGLFG 305 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH-HHhCCceeeeeehHHHHHHHHHH
Confidence 88888877888778778888899999999999999999999999999999999988 89887766655544444433332
Q ss_pred h-hccc----------------cccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhh
Q 005307 595 L-LSFH----------------ILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLA 657 (703)
Q Consensus 595 ~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g 657 (703)
+ +.+. .....+.+.+++..+++|++.+...+...+++++.+|++ .+|+++|..+ +...+|
T Consensus 306 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~-~~G~v~g~~~--~~~~~~ 382 (1140)
T PRK06814 306 LDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPA-HRARVIAANN--VLNAAF 382 (1140)
T ss_pred HHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcc-cceeeeHHHH--HHHHHH
Confidence 2 1111 000133455666777778888888888999999999999 9999999984 477788
Q ss_pred hhhccceee
Q 005307 658 RVIADGTIT 666 (703)
Q Consensus 658 ~~~gp~~~~ 666 (703)
..+++++++
T Consensus 383 ~~ig~~~~g 391 (1140)
T PRK06814 383 MVAGTIILA 391 (1140)
T ss_pred HHHHHHHHH
Confidence 899998655
No 78
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.94 E-value=9.2e-25 Score=233.27 Aligned_cols=356 Identities=15% Similarity=0.084 Sum_probs=231.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HH
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VG 325 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~ 325 (703)
+..+.+.+..++..++.+...|.+|.+..+ +|.++.++|++.+++.++..++++++|+++||+|||++++++.... ++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 89 (420)
T PRK09528 10 PNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVL 89 (420)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 345555667777778888888999988877 9999999999999999999999999999999999999887764432 22
Q ss_pred HHHH---Hhhcc-c-chhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cc
Q 005307 326 NTLY---AMAYD-L-NSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QT 397 (703)
Q Consensus 326 ~~~~---~~a~~-~-~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~ 397 (703)
.... ..+.. . ..+...++++++.|.+... +....+..+. .++++..+|......++|..+||++++.+ ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~ 167 (420)
T PRK09528 90 FGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFNI 167 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHhc
Confidence 2211 11100 0 1111223344444443322 3333333222 34567788889999999999999999999 77
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCc
Q 005307 398 NFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEN 477 (703)
Q Consensus 398 g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (703)
+| +++|++.++++++.+++.++..|++++....++ +
T Consensus 168 ~~----------~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------------------------------- 203 (420)
T PRK09528 168 NP----------QINFWLGSGSALILLVLLFFAKPDAPSTAKVAN---A------------------------------- 203 (420)
T ss_pred Cc----------hHhHHHHHHHHHHHHHHHhcccccccchhhhcc---c-------------------------------
Confidence 87 899999888877766555554444332111000 0
Q ss_pred cccccCCCCCCCCcccccccCCCcccHHHHHHhh-CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhc---cccchhHHH
Q 005307 478 DDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLL-TPSVKVQLFVYFMLKYAMEILLAESSVITEHYF---IWSTSRVAI 553 (703)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~g~ 553 (703)
. .........++..... +|+++...+..++...........+|.|+.+.+ +.+..+.|.
T Consensus 204 ------------~-----~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 266 (420)
T PRK09528 204 ------------L-----GANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGY 266 (420)
T ss_pred ------------h-----hcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 0 0000011223322222 666665555444444444445555677765543 456667788
Q ss_pred HHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 005307 554 FLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSR 633 (703)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (703)
+.++..++..++..+.+ ++.||+|+|+.+..+..+.+++.++.... .+.+.+++..++.+++.+...+....++.+
T Consensus 267 ~~~~~~~~~~~~~~~~g-~l~dr~g~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 342 (420)
T PRK09528 267 LNSFQVFLEALIMFFAP-FIINRIGAKNALLLAGTIMAVRIIGSGFA---TGPLEVSILKLLHAFEVPFLLVGVFKYITL 342 (420)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhCcchhhHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888777 99999999999888877777765544332 334555566666677776666777788889
Q ss_pred hccCCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 634 VMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 634 ~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
..|++ .+++..+... ++...+|.+++|.+.+ +.+..|
T Consensus 343 ~~~~~-~~a~~~~~~~-~~~~~lg~~ig~~~~G~l~~~~G 380 (420)
T PRK09528 343 NFDVR-LSATIYLVGF-QFAKQLGAVFLSTLAGNLYDSIG 380 (420)
T ss_pred HcCcc-ceeeeeeehH-HHHHHHHHHHHHHHHHHHHHhhC
Confidence 99888 7777655521 3366789999998666 444443
No 79
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.6e-26 Score=219.75 Aligned_cols=165 Identities=28% Similarity=0.374 Sum_probs=133.3
Q ss_pred CCchhhhhhhccchhhhhccChhhHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 2 VAFGKKLKETQIQEWQGYYINYKLLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIVLFLLEQQGALASRLSDLG 81 (703)
Q Consensus 2 mkFg~~l~~~~~~ew~~~yi~Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~ 81 (703)
|+||+.|+++.+|+|+.+||||+.|||.+|+-. ...++.+.+ +.+|.+.||.||+||-.|..+|.+|+.+|+..+|
T Consensus 1 M~Fg~~L~~~ly~p~k~~YinYe~LK~~lK~~~-~~~~w~e~d---EsdFVe~Ld~eLeKVY~F~~~k~~ev~erl~~le 76 (509)
T COG5036 1 MRFGKKLKNNLYPPYKYSYINYENLKKLLKESE-EEGSWSESD---ESDFVEELDKELEKVYGFQLSKYSEVMERLRTLE 76 (509)
T ss_pred CchhHHHHhccCcccccccCCHHHHHHHHhhcc-ccCCCcccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999922 222233332 5899999999999999999999999999999999
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCchHHHHhhhcCCCccchhhhhc
Q 005307 82 EHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLRQVFKH 161 (703)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK~~~~~~~~~~~~~~~~~~f~~~q~~~~~ 161 (703)
++.++..+..+.+...+ .+.|...+.++|.+|.+||+|||.||+|||||+++..+++-|..+.-..||. .
T Consensus 77 eq~~~~i~~~ds~~~~~---~LeE~L~~v~~l~kF~RLN~tGF~KIvKKHDK~~~y~lkpvfqvrLk~~p~~-------s 146 (509)
T COG5036 77 EQTDEAIQELDSDNFPK---ILEEELDTVHDLAKFSRLNFTGFKKIVKKHDKHTGYSLKPVFQVRLKAKPFF-------S 146 (509)
T ss_pred hccHHHhhcccCCcchh---HHHHHHHHHHHHHhhhhhhhHHHHHHHHhhcCCCCceechhHHHHhccCCcc-------h
Confidence 99886555455444432 3444445889999999999999999999999999999999999887777885 4
Q ss_pred ccHhHHHHHHHHHHHHHhh
Q 005307 162 VGIGAVVGAISRNLAELQD 180 (703)
Q Consensus 162 ~~~~~~~~~i~~~~~~l~~ 180 (703)
+..+.+.-.++..++-++.
T Consensus 147 e~yd~Ll~kis~LY~~lR~ 165 (509)
T COG5036 147 EQYDPLLYKISSLYNILRS 165 (509)
T ss_pred hhhcHHHHHHHHHHHHHHh
Confidence 4555666666655555544
No 80
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.6e-26 Score=220.91 Aligned_cols=330 Identities=15% Similarity=0.141 Sum_probs=247.6
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH-HHHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hh
Q 005307 280 AAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL-LVGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AV 356 (703)
Q Consensus 280 ~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~-~~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~ 356 (703)
.+.+++|++.++..+.+++.+|+.|.+.||+|+|..+++|++. +.+++++++. +++++++++|.++|+|.++ +.
T Consensus 103 ~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg---~sy~~l~vAR~LQgvgsA~~~ts 179 (464)
T KOG3764|consen 103 RENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG---NSYPMLFVARSLQGVGSAFADTS 179 (464)
T ss_pred ccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc---chhHHHHHHHHHhhhhHHHHHhh
Confidence 3467899999999999999999999999999999999999775 5999999999 9999999999999999988 88
Q ss_pred hhHHhhccCChh-hhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHHHHHHHHHHHHHhccC
Q 005307 357 NRRYISDCVPLK-LRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFRE 433 (703)
Q Consensus 357 ~~~~i~~~~~~~-~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e 433 (703)
..++++|.+|.+ +|++++|+.-.+.++|.++||++||++ ..|. +.+|.+.+++.++...+.++.++.
T Consensus 180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk----------~aPFlVL~~v~Lld~~L~l~vi~p 249 (464)
T KOG3764|consen 180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGK----------SAPFLVLAIVLLLDGALQLLVIEP 249 (464)
T ss_pred hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCC----------cCcHHHHHHHHHHHHHHHHheeCc
Confidence 999999999865 589999999999999999999999999 5675 999999999999888777765544
Q ss_pred CCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCc
Q 005307 434 PPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTP 513 (703)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (703)
+...... .....+++.+.+ .|
T Consensus 250 ~~~~~~~---------------------------------------------------------~~~~~~~~~Ll~--dP 270 (464)
T KOG3764|consen 250 TEMDPDS---------------------------------------------------------TEQGTPMWSLLM--DP 270 (464)
T ss_pred cccCccc---------------------------------------------------------cccCccHHHHHh--Cc
Confidence 3322110 111234555555 78
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHH--HHHHHHH
Q 005307 514 SVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLL--ASEIIVC 591 (703)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~--~~~~~~~ 591 (703)
.++.........+.+.......++.+..+.+.-+..+.|+.+...++..+++..+.+ .+.||++..+.+. .+++..+
T Consensus 271 ~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg-~la~k~~~~~wl~~~~gl~~~G 349 (464)
T KOG3764|consen 271 YILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFG-KLADKYPHLRWLLSLGGLATVG 349 (464)
T ss_pred hHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHH-HHHHhcCchhHHHHHHHHHHHH
Confidence 888877777777788888888889988888875555899999888899999988888 9999999544433 3333333
Q ss_pred HHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCC-----cccccchhhhHHhhhhhhhhhccceee
Q 005307 592 IGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRL-----SRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 592 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+++ ...+. ..++...++..+..+++.+.+.......+...+..+. ..|.+.++. ....++|.++||.+++
T Consensus 350 ~~~-~~iP~--~~~~~~L~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGsVyaIa--d~a~sla~a~GP~~gg 424 (464)
T KOG3764|consen 350 VSS-GPIPF--ATSIAQLWVPNFGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGSVYAIA--DAAFSLAYAIGPTFGG 424 (464)
T ss_pred HHh-chhHh--hhhHHHHhhhhHHHHHHHHHHHHHHhhhhHHhcchhhccccceeeeHHHHH--HHHHHHhhhccccccc
Confidence 222 22222 3455555555555566666666666666666666542 246666666 4477799999999777
Q ss_pred -eeccccCCcccccchhHHHHHHHHH
Q 005307 667 -LSGYLGESRLLNVTLLPSLFICISS 691 (703)
Q Consensus 667 -~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (703)
+...+|. .|......+..++.
T Consensus 425 ~iv~~iGF----~wl~~iig~~n~iy 446 (464)
T KOG3764|consen 425 SLVEAIGF----EWLMTIIGILNLIY 446 (464)
T ss_pred hheeehhH----HHHHHHHHHHHHHH
Confidence 5566663 33444444444433
No 81
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.94 E-value=4.8e-25 Score=230.16 Aligned_cols=328 Identities=13% Similarity=0.080 Sum_probs=235.5
Q ss_pred HhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHH
Q 005307 262 VNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAV 340 (703)
Q Consensus 262 ~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~ 340 (703)
.......|.+|.+.+++|.+..+.|++.+++.++..++.++.|+++||+|||+++.++.+.. ++.+.+ .+ ++++.
T Consensus 14 ~~~~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~---~~~~~ 89 (355)
T TIGR00896 14 PALTSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SA---PGTAL 89 (355)
T ss_pred CccccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hh---ccHHH
Confidence 34466778999999999999999999999999999999999999999999999999887654 666666 66 88999
Q ss_pred HHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cc--cccccccccccchhHHH
Q 005307 341 LLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QT--NFKIYKLTFNEDTLPGW 414 (703)
Q Consensus 341 l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~--g~~~~~~~~~~~~~~f~ 414 (703)
+++.|++.|++.+. +....++.|++| ++|++++++++.+..+|..+||.+++.+ .. +| |+.|.
T Consensus 90 l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w----------~~~f~ 158 (355)
T TIGR00896 90 LFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHW----------QQALA 158 (355)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH----------HHHHH
Confidence 99999999999877 667778888886 6899999999999999999999998887 32 25 88887
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccc
Q 005307 415 VMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDS 494 (703)
Q Consensus 415 i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (703)
+.+++.++.. ...+|+.+++.... ..
T Consensus 159 ~~~~~~~~~~---~~~~~~~~~~~~~~------------------------------------------------~~--- 184 (355)
T TIGR00896 159 WWALPALLAL---LAWIPQVRRRVAAN------------------------------------------------QT--- 184 (355)
T ss_pred HHHHHHHHHH---HHHhhhhccccCCC------------------------------------------------CC---
Confidence 7665443332 22344433211100 00
Q ss_pred cccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhh
Q 005307 495 KITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYIS 574 (703)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~ 574 (703)
. .....+..++ +|.++...+..++..........+.|.|+++ .|++..+.+...++.+++.++++.+.+ ++.
T Consensus 185 -~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g~~~~~~g~~~~~~~~~~i~~~~~~g-~l~ 256 (355)
T TIGR00896 185 -T---TRLTPVRIWR--SPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HGASAATAGSLLALMQLAQAASALLIP-ALA 256 (355)
T ss_pred -C---CCCCCchhhc--CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHhHH-HHH
Confidence 0 0001122222 5666666666666666667777888988876 699999999999999999999999888 999
Q ss_pred hhh-hhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhh
Q 005307 575 NIF-EERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEA 653 (703)
Q Consensus 575 ~r~-g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~ 653 (703)
||+ ++|+.+..+.++.+++.+.+.... .+.. . ...++.+++.+...+...+.+.+..++...+|+..+..+ ..
T Consensus 257 dr~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~ 330 (355)
T TIGR00896 257 RRVKDQRGIVAVLAVLQLVGLCGLLFAP--MHGL-W-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQ--SI 330 (355)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHhh--hhHH-H-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHH--HH
Confidence 999 456566666666666654333321 1111 1 234566888888787777776655554315677777763 36
Q ss_pred hhhhhhhccceee-eecccc
Q 005307 654 GTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 654 ~~~g~~~gp~~~~-~~~~~~ 672 (703)
+.++..++|.+.+ +.+..+
T Consensus 331 ~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 331 GYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 7788889998665 444443
No 82
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.93 E-value=1.4e-23 Score=222.60 Aligned_cols=343 Identities=15% Similarity=0.068 Sum_probs=228.0
Q ss_pred HHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhcccc-----Cchh-HHHHHHHHH-HHH
Q 005307 254 LVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRS-----YLKP-LVFSSIVLL-VGN 326 (703)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-----Grr~-~l~~~~~~~-~~~ 326 (703)
+...+..++..+.....+|.+.++.|.|.+++|++..+... .+..+++|+++||+ |||+ .++++.+.. ++.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~ 82 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASI 82 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHH
Confidence 34456667788888899999999999999999999777665 68999999999999 8765 677765544 666
Q ss_pred HHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-c--ccccc
Q 005307 327 TLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-Q--TNFKI 401 (703)
Q Consensus 327 ~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~--~g~~~ 401 (703)
.+.++.....+++.+++..++.|++.+. ++..+++.|++|+++|+++.++...+..+|.++|+.+++.+ . +||
T Consensus 83 ~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw-- 160 (402)
T PRK11902 83 AAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGW-- 160 (402)
T ss_pred HHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCH--
Confidence 6666663334688888888887777666 88999999999999999999999999999999999999888 4 477
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccc
Q 005307 402 YKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQE 481 (703)
Q Consensus 402 ~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (703)
|.+|++.+++.++..+. .+.+||++++..++
T Consensus 161 --------~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~---------------------------------------- 191 (402)
T PRK11902 161 --------GNTYLLMAGLMLAGALT-TLWAPEPEVPARPP---------------------------------------- 191 (402)
T ss_pred --------HHHHHHHHHHHHHHHHH-HHhcCCCccccccc----------------------------------------
Confidence 99999988877665543 44567765421110
Q ss_pred cCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhh
Q 005307 482 LDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLT 561 (703)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~ 561 (703)
.+ ........++.+++ +|.++..++..++...+......+.++++.+.+|+++.+.|++....+++
T Consensus 192 --------~~----~~~~~~~~~~~l~~--~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~ 257 (402)
T PRK11902 192 --------RS----LGEAVVGPLRDFFS--RRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLA 257 (402)
T ss_pred --------ch----hHHHHHHHHHHHHh--CcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHH
Confidence 00 00001123444444 77777766666665554443334455667777899999999988666554
Q ss_pred -hhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhcc--ccccccchhHHHHHHH----HHHhhhhhhhHHHHHHHHhh
Q 005307 562 -VLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSF--HILVPYSVPQYVGSAL----ITFVAAEVLEGVNLSLLSRV 634 (703)
Q Consensus 562 -~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 634 (703)
.+++..+.+ ++.||+++|+.+..+..+..++.+... ... +.+.+...+..+ ..+++.+...+....++++.
T Consensus 258 ~~i~g~~~~g-~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 335 (402)
T PRK11902 258 ATIVGALAGG-TLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT-PKHLWTMALAIGIENLCGGMGTAAFVALLMALCNRS 335 (402)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 556666655 999999999887766655544433221 111 123343333333 23344444455555666666
Q ss_pred ccCCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 635 MSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 635 ~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
.|.+ . .+.. ....+++..+++.+++ +.+.+|
T Consensus 336 ~~~~-~----~~~~--~~~~~l~~~~~~~~~G~l~~~~G 367 (402)
T PRK11902 336 FSAT-Q----YALL--SALASVGRVYVGPTSGYLVEAYG 367 (402)
T ss_pred CcHH-H----HHHH--HHHHHHHHHHHHHHHHHHHHHhC
Confidence 5554 3 3443 2233466654554444 556555
No 83
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.93 E-value=3e-24 Score=224.32 Aligned_cols=326 Identities=13% Similarity=0.028 Sum_probs=231.2
Q ss_pred hhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhcccc-----CchhHH-HHHHHHH-HHHHHHHhhcccc
Q 005307 264 TYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRS-----YLKPLV-FSSIVLL-VGNTLYAMAYDLN 336 (703)
Q Consensus 264 ~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-----Grr~~l-~~~~~~~-~~~~~~~~a~~~~ 336 (703)
.++..+.+|.+.+++|+|.+++|++.+. .+...+ .+++|+++||+ |||+.+ +.+.+.. ++.++.++.....
T Consensus 4 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~ 81 (356)
T TIGR00901 4 LGLVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPST 81 (356)
T ss_pred chhHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcch
Confidence 4566788999999999999999999765 455554 89999999997 888864 5555444 5555666663335
Q ss_pred hhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhH
Q 005307 337 SIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLP 412 (703)
Q Consensus 337 ~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~ 412 (703)
+++.+.+..++.|++.+. ++..++++|++|+++|+++.++...+..+|.++||.+++.+ ..|. ......+||.+
T Consensus 82 ~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~--~~~~~~~wr~~ 159 (356)
T TIGR00901 82 DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFA--NTGLITLWGYI 159 (356)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccc--ccccccccHHH
Confidence 677777778888877766 88999999999999999999999999999999999999888 5551 00111124999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcc
Q 005307 413 GWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDE 492 (703)
Q Consensus 413 f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (703)
|++.+++.++..+..++..||+.+.... . +
T Consensus 160 f~i~ai~~l~~~~~~~~~~~e~~~~~~~-------------------------------------------------~-~ 189 (356)
T TIGR00901 160 FFWTALLILPGLLVTLFLAKEPQEDASV-------------------------------------------------P-K 189 (356)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCccccc-------------------------------------------------c-h
Confidence 9999987777665555555664321100 0 0
Q ss_pred cccccCCCcccHHHHHHhhCcc---hHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhh-hhhhHHHH
Q 005307 493 DSKITHRPVTSIMSAYRLLTPS---VKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGL-TVLPVNII 568 (703)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~-~~~~~~~~ 568 (703)
.........++.+++ ++. ++...+..++..++......+.|.|+.+ +|+++.+.|....+.+. ..+++.++
T Consensus 190 --~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~ 264 (356)
T TIGR00901 190 --PLTQAVLKPIREFFQ--RKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLD-MGFSKEEIALVAKINGLLGAILGGLI 264 (356)
T ss_pred --hHHHHHHHHHHHHHH--hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHH
Confidence 000001123344443 443 6666666666777777888889999887 89999999988887775 44555555
Q ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHhhcccc-ccc-------cchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCc
Q 005307 569 VGNYISNIFEERQVLLASEIIVCIGILLSFHI-LVP-------YSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLS 640 (703)
Q Consensus 569 ~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (703)
.+ ++.||+|+|+.+..+.++.+++..+.... ... .+.+......++.+++.+...+...+++++..|++ .
T Consensus 265 ~g-~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~-~ 342 (356)
T TIGR00901 265 GG-IIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPK-F 342 (356)
T ss_pred HH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCC-c
Confidence 55 99999999998887777666654432211 111 23344555666668888889999999999999999 9
Q ss_pred ccccchhhhH
Q 005307 641 RGTYNGGLLS 650 (703)
Q Consensus 641 ~g~~~g~~~~ 650 (703)
+|+.+|+.++
T Consensus 343 ~g~~~g~~~~ 352 (356)
T TIGR00901 343 GATQMALLSS 352 (356)
T ss_pred cHHHHHHHHH
Confidence 9998888743
No 84
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.93 E-value=4.4e-24 Score=224.12 Aligned_cols=333 Identities=14% Similarity=0.110 Sum_probs=248.3
Q ss_pred HhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc
Q 005307 276 LSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR 354 (703)
Q Consensus 276 ~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~ 354 (703)
.+++.+..+.|++.+++..|+++++++.|+++||+|-|+++..+.++. +++++..++.. .+++.+++.|+++|++.|.
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~-~~~~~~~~~R~lqGl~~g~ 144 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAAS-IGFYLLLVLRFLQGLGQGV 144 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHhHHHHhH
Confidence 457899999999999999999999999999999999999888886654 88888887722 3456889999999999987
Q ss_pred --hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--c-ccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 005307 355 --AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--Q-TNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWI 429 (703)
Q Consensus 355 --~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~-~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~ 429 (703)
|+...+.+.|.|++||++..++...+..+|.+++-+++|++ . +|| +++|++.++++++..++.++
T Consensus 145 ~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW----------~sifY~~g~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 145 LFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGW----------PSIFYVFGIVGLIWFILWFL 214 (466)
T ss_pred HHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCC----------chHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 4 788 99999999999999988888
Q ss_pred hccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHH
Q 005307 430 SFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYR 509 (703)
Q Consensus 430 ~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (703)
+..|+|..++...++| .+.++.+ .. ....+.+...|++.+.+
T Consensus 215 ~~~d~P~~h~~is~~E--------l~~I~~~----------------k~--------------~~~~~~~~~vP~~~i~t 256 (466)
T KOG2532|consen 215 FYSDSPSKHPNISEKE--------LKYIEKG----------------KS--------------EAHVKKKPPVPYKAILT 256 (466)
T ss_pred HhcCCcccCCCCCHHH--------HHHHHhc----------------cc--------------ccccCCCCCCCHHHHHc
Confidence 8888887543211000 0000000 00 00011114668988888
Q ss_pred hhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhh---------H
Q 005307 510 LLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEE---------R 580 (703)
Q Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~---------r 580 (703)
++++|.+.+..++...+...+..+.|.|+.+.+|++..+.|++.++..+...+...+.| .++||+.+ |
T Consensus 257 --s~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g-~lsD~l~~~~ls~t~~rk 333 (466)
T KOG2532|consen 257 --SPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAG-QLSDRLTFRILSETTVRK 333 (466)
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHH-HHHHHHhhccCchHhHHH
Confidence 99999999999999999999999999999999999999999999999999999988878 99998755 2
Q ss_pred HHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhh-hhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhh
Q 005307 581 QVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAE-VLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARV 659 (703)
Q Consensus 581 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~ 659 (703)
..-.++....+++++.+........ +..++.+.+ ..+.. ...+....-..+..|.. .+.++|+. +....++.+
T Consensus 334 ifn~i~~~~~ai~l~~l~~~~~~~~-~~a~~~l~~-~~~~~g~~~~Gf~~~~~~~apq~--a~~l~g~~--~~~~~~~~~ 407 (466)
T KOG2532|consen 334 IFNTIAFGGPAVFLLVLAFTSDEHR-LLAVILLTI-AIGLSGFNISGFYKNHQDIAPQH--AGFVMGII--NFVGALAGF 407 (466)
T ss_pred HHHhHHHHHHHHHHHeeeecCCCcc-hHHHHHHHH-HHHHcccchhhhHhhhhhccchH--HHHHHHHH--HHHHHHHHH
Confidence 2223555555555444433321122 112222221 22222 22222222233335554 78788887 448889999
Q ss_pred hccceee
Q 005307 660 IADGTIT 666 (703)
Q Consensus 660 ~gp~~~~ 666 (703)
++|.+.+
T Consensus 408 ~~P~~vg 414 (466)
T KOG2532|consen 408 IAPLLVG 414 (466)
T ss_pred HHHHhee
Confidence 9999666
No 85
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.93 E-value=1.1e-23 Score=223.31 Aligned_cols=343 Identities=10% Similarity=0.030 Sum_probs=237.7
Q ss_pred HHHHHHHHHHhhhhhccchhHHHH-hcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCc-hhHHHHHHHHH-HHHHHH
Q 005307 253 NLVNTFLYMVNTYVIVPTADNYSL-SLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYL-KPLVFSSIVLL-VGNTLY 329 (703)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Gr-r~~l~~~~~~~-~~~~~~ 329 (703)
+.+..++....+++..|.++.+.. ++|.+..++|++.+++.++.+++++++|.++||+|| |+++.++.+.. ++..++
T Consensus 7 ~~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~ 86 (418)
T TIGR00889 7 LKFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFA 86 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 456677788888888777777664 589999999999999999999999999999999865 77777776655 777778
Q ss_pred HhhcccchhHHHHHHHHHHhhcCcc--hhhhHH----hh----ccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-ccc
Q 005307 330 AMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRY----IS----DCVPLKLRMRASAGFVSASALGMACGPALACLF-QTN 398 (703)
Q Consensus 330 ~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~----i~----~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g 398 (703)
.+. ++++.+++.|++.|++.+. +...+. +. |......|.+.+| .+|.++||++++.+ ..+
T Consensus 87 ~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~ 157 (418)
T TIGR00889 87 AQV---TTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIEL 157 (418)
T ss_pred HHh---cCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccc
Confidence 888 8999999999999997654 443333 22 3333334555555 47889999999888 322
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcc
Q 005307 399 FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEND 478 (703)
Q Consensus 399 ~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (703)
- +.+|++.+++.++.+++ .+.+||+++...+++
T Consensus 158 ~----------~~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~------------------------------------ 190 (418)
T TIGR00889 158 S----------NIQLYITAGSSALLGVF-ALTLPDIPVAKSTAK------------------------------------ 190 (418)
T ss_pred h----------hHHHHHHHHHHHHHHHH-HhcCCCCCCCccccc------------------------------------
Confidence 1 34577777666665544 446787653211100
Q ss_pred ccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhcccc--------chh
Q 005307 479 DQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWS--------TSR 550 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--------~~~ 550 (703)
.. .. .......+...+ +|+++.+.+..++..........+++.|..+ .|.+ ...
T Consensus 191 -----------~~---~~-~~~~~~~~~~~k--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~ 252 (418)
T TIGR00889 191 -----------MS---IK-VMLGLDAFILFK--NKRMAIFFFFSMLLGAPLQITNIFGNGFLHE-FGRNPEFADSFVVKN 252 (418)
T ss_pred -----------cC---HH-HHhhhhHHHHhc--CCCeeeHHHHHHHHHhHHHHHHHhHHHHHHH-hcccccccchhhhhh
Confidence 00 00 000011223333 6777777666666666555555666777765 3544 356
Q ss_pred HHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhcccccc-ccchhHHHHHHHHHHhhhhhhhHHHHH
Q 005307 551 VAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILV-PYSVPQYVGSALITFVAAEVLEGVNLS 629 (703)
Q Consensus 551 ~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 629 (703)
.+...++..+..+++....+ ++.||+|+|+++.++.++.++++.+...... ....+.+++..++.+++.+...+....
T Consensus 253 ~g~~~~~~~i~~i~~~~~~g-~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~ 331 (418)
T TIGR00889 253 ASIWMSLSQFSEIFFILTIP-FFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSV 331 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888888888888877 9999999999999998888777543332210 112344556677778888888888889
Q ss_pred HHHhhccCCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 630 LLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 630 ~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
++.+..|++ .+|++.|..+. ....+|.++||++++ +.+..+
T Consensus 332 ~i~~~~p~~-~~g~~~g~~~~-~~~~lg~~iGp~l~G~l~~~~g 373 (418)
T TIGR00889 332 FVEKEVPVH-IRASAQGLFTL-MCNGFGSLLGYILSGVMVEKMF 373 (418)
T ss_pred HHHHHCCHH-HHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHhc
Confidence 999999998 89999998732 256789999999777 555544
No 86
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.92 E-value=4.8e-23 Score=221.58 Aligned_cols=395 Identities=12% Similarity=-0.008 Sum_probs=251.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHh---cCccchhhhHHHHHHHHHHHHHhhhhhhhccc-cCchhHHHHHHHHH
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLS---LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNR-SYLKPLVFSSIVLL 323 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~Grr~~l~~~~~~~ 323 (703)
+.++.+++..++..++++...+.+|.|..+ +|.+..+.|++.+++.++..++++++|+++|| +|||++++++.+..
T Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 10 KPLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence 455677778888889988888999999765 89999999999999999999999999999999 89999999997755
Q ss_pred -HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhh---hhhHHHHHHHHHHHHHHHHHHhhhhh--
Q 005307 324 -VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKL---RMRASAGFVSASALGMACGPALACLF-- 395 (703)
Q Consensus 324 -~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~---R~~~~~~~~~~~~~G~~lgp~i~~~l-- 395 (703)
++.++++++ ++++.++++|++.|+|.|. +...++++|++|+++ |+.+++++..+.++|.++||++++++
T Consensus 90 ~~g~~~~~~~---~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~ 166 (475)
T TIGR00924 90 MLGHFMLAMS---IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE 166 (475)
T ss_pred HHHHHHHHhc---ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888 8889999999999999887 888999999998754 88899999999999999999999999
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcc--cc-cch-h
Q 005307 396 QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPL--LL-NSE-A 471 (703)
Q Consensus 396 ~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~-~ 471 (703)
..|| ++.|++.++..+++++. +++.++..+......+.... ++.+.......... .. ... .
T Consensus 167 ~~g~----------~~~f~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 231 (475)
T TIGR00924 167 NYGY----------HVGFNLAAVGMVIGLLT-FFAGRHMLRDIGSVPDPLSG----QGKTYGKLLLALLAALALVFFCAW 231 (475)
T ss_pred hcCh----------HHHHHHHHHHHHHHHHH-HHHcccccccCCCCCCCcch----hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 5687 89999887655554433 33333322111100000000 00000000000000 00 000 0
Q ss_pred cccCCcccccc-CCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchh
Q 005307 472 KQKDENDDQEL-DNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSR 550 (703)
Q Consensus 472 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~ 550 (703)
........+.. ................++ ......+.+...+..+++...+.+..+....+.++.+..+..+.+...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~ 309 (475)
T TIGR00924 232 LMHHVVIANILLMTVTLAVIIFFFRLAFKP--RLDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLG 309 (475)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccc
Confidence 00000000000 000000000000000000 000011100122344455555666666666777787776654443222
Q ss_pred ----HHHHHHhhhhhhhhHHHHHHhhhhhhhhh-----HHH--HHHHHHHHHHHHhhccc----c--ccccchhHHHHHH
Q 005307 551 ----VAIFLACLGLTVLPVNIIVGNYISNIFEE-----RQV--LLASEIIVCIGILLSFH----I--LVPYSVPQYVGSA 613 (703)
Q Consensus 551 ----~g~~~~~~~~~~~~~~~~~~~~l~~r~g~-----r~~--~~~~~~~~~i~~~~~~~----~--~~~~~~~~~~~~~ 613 (703)
.+.+.++.++..++...++. ++..+.++ +.. +.+|+++.+++++.+.. . ....+.++.++..
T Consensus 310 ~~ip~~~~~~~n~~~iil~~p~~~-~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~ 388 (475)
T TIGR00924 310 MSVPVIWFQSLNPFWVVVGSPVLA-MIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIY 388 (475)
T ss_pred eEECHHHHHhhhHHHHHHHHHHHH-HHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHH
Confidence 56777777777777776655 44344433 222 25677776666543321 0 1135677888899
Q ss_pred HHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 614 LITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
++.++|.....|...+++.+..|++ .||+++|... ....+|..+++.+..
T Consensus 389 ~~~~~ge~~~~p~~~~~~~~~aP~~-~~g~~~g~~~--l~~~~g~~l~~~~~~ 438 (475)
T TIGR00924 389 LFQTLGELMISPLGLSWWTKIAPQR-LMGQMLGMWF--LAQAMGSLLGGYLAT 438 (475)
T ss_pred HHHHHHHHHHhHHHHHHHHHhCCHH-HHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 9999999984 466788888877544
No 87
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.92 E-value=2.3e-22 Score=212.65 Aligned_cols=351 Identities=11% Similarity=0.024 Sum_probs=235.7
Q ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHH--HHHHHHHHHHHhhhhhh-hccccCchhHHHHHHHH--HH
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVI--IGSMAVAQVFSSVYFSA-WSNRSYLKPLVFSSIVL--LV 324 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i--~s~~~l~~~i~~~~~G~-l~Dr~Grr~~l~~~~~~--~~ 324 (703)
+..+....+..++..++..|.+|.+.++.|.+++++|++ .+.+.+..++.+|+++. .+||+|||+..++.+.+ .+
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~ 82 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSA 82 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHH
Confidence 445666778888889999999999999999999999997 46778889899999955 79999988876555432 22
Q ss_pred HHHHHH-hhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccc
Q 005307 325 GNTLYA-MAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNF 399 (703)
Q Consensus 325 ~~~~~~-~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~ 399 (703)
.....+ +........+++..-++.++..+. +...++..|..++++++...+....+..+|.++|+.+.+++ ..||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw 162 (390)
T TIGR02718 83 CLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQ 162 (390)
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 222222 211112233334444445455444 77888888989888889888888888899999999888887 6788
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccc
Q 005307 400 KIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDD 479 (703)
Q Consensus 400 ~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (703)
|.+|++.+++.++..+..++..|+++++.+.
T Consensus 163 ----------~~~f~~~a~l~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 193 (390)
T TIGR02718 163 ----------RPAFLLVACVPLASLVCVLWLKDRAVASPEA--------------------------------------- 193 (390)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHcCCCCcCcccc---------------------------------------
Confidence 9999999988877666654433332211000
Q ss_pred cccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhh
Q 005307 480 QELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLG 559 (703)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 559 (703)
......++++..+ +|.++......++...+......+.++|+.+ .|+++.++|....+.+
T Consensus 194 -----------------~~~~~~~~~~~l~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~-~G~s~~~ig~~~~~~~ 253 (390)
T TIGR02718 194 -----------------PLARRASLFRFFR--RPLAWSLLALALLSAMTAVSGFGLSKLYLVD-AGWPLEWIGRLGMAGG 253 (390)
T ss_pred -----------------chhhHHHHHHHHc--CcCHHHHHHHHHHHHHHHHHHHHHhhHHHHh-cCCCHHHHHHHHhHHH
Confidence 0000112334433 6777777777777777777777788888877 6999999999888877
Q ss_pred hhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccc---cccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhcc
Q 005307 560 LTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHIL---VPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMS 636 (703)
Q Consensus 560 ~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (703)
+...+.+.+.++++.||+|+++.+..+..+.++..+...... .............+.+++.+...+...+...+..+
T Consensus 254 ~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 333 (390)
T TIGR02718 254 AVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAG 333 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 655554443444999999999988877665533322221110 01112222222333345566666777777777776
Q ss_pred C-CCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 637 S-RLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 637 ~-~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
+ + .+|+.++..++ ...+|..+||.+++ +++..+
T Consensus 334 ~~~-~~g~~~~~~~~--~~~lg~~~g~~~~G~l~~~~G 368 (390)
T TIGR02718 334 DGD-QAGTDVTAVQS--TRDLGELIASSIAGYLTDRFG 368 (390)
T ss_pred ccc-chHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc
Confidence 6 5 78988898844 67899999999766 445444
No 88
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=99.92 E-value=1.4e-23 Score=200.60 Aligned_cols=393 Identities=12% Similarity=0.051 Sum_probs=259.3
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH
Q 005307 243 QRYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL 322 (703)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~ 322 (703)
.+++|..............+-......+.|......|.+..+..++......+..+++..+|.++|++|||+.+.+....
T Consensus 73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~ 152 (528)
T KOG0253|consen 73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLV 152 (528)
T ss_pred ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHH
Confidence 35667666666666666665555555666777777899999999999999999999999999999999999999988775
Q ss_pred H-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccc
Q 005307 323 L-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTN 398 (703)
Q Consensus 323 ~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g 398 (703)
. +...+.+.+ +|+..+++.|.+.|+|.|. |...++-.|..|..+|+..+-.. ..+.+|.++...++... .+|
T Consensus 153 t~v~~~is~~s---pnf~~L~~f~~l~~~g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g 228 (528)
T KOG0253|consen 153 TGVFGVISGAS---PNFASLCVFRALWGFGVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG 228 (528)
T ss_pred HHHHHHhhcCC---CCeehhhHHHHHHhccCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh
Confidence 5 888888999 9999999999999999988 99999999999999998877766 89999999999888777 788
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccc-cchhcccCCc
Q 005307 399 FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLL-NSEAKQKDEN 477 (703)
Q Consensus 399 ~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 477 (703)
| ||-.........+.+ ...+.+||+|+....+++++++.+..++...++... .|... ....+.+.++
T Consensus 229 w----------r~~l~~~~~pl~~~a-~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~q-lplgvl~~s~~~~~e~ 296 (528)
T KOG0253|consen 229 W----------RYLLFTSSTPLMFAA-RFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQ-LPLGVLESSAIDRQEQ 296 (528)
T ss_pred H----------HHHHHHHHhHHHHHH-HHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCC-CCcceeeeehhhhhhh
Confidence 8 776666664444444 445568999998777777777665544433332211 11110 0000000111
Q ss_pred cccccCCCCCCCCcccccccCCCcccHHHHHHhh-CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhh--cccc----chh
Q 005307 478 DDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLL-TPSVKVQLFVYFMLKYAMEILLAESSVITEHY--FIWS----TSR 550 (703)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s----~~~ 550 (703)
.+ .+-+ +......+.......+++.-. ++..+.+..+.|...+++++..-...-.++.. .+.. +.+
T Consensus 297 e~--~~~~-----~~~~~a~ke~rg~~~nLlsp~lrkttlllw~iwfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e 369 (528)
T KOG0253|consen 297 EE--SDLD-----DSKSSAAKEVRGGTTNLLSPKLRKTTLLLWRIWFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTE 369 (528)
T ss_pred hh--hchh-----hhhhccccccccchHhhcChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccCccccchhcchhH
Confidence 10 0000 000011111122223322211 33444555555555555555433322222221 1110 111
Q ss_pred ------------HH-HHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHH
Q 005307 551 ------------VA-IFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITF 617 (703)
Q Consensus 551 ------------~g-~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (703)
.- .-..+..+...+|.++.+ +++||+|||+.+...+++++++.++++.- .+-....+..+..-
T Consensus 370 ~e~~~~c~~s~~~dYrdllitslaefPGlLIt~-~iverlGRKkTMal~l~~f~iflfll~~c---~~rn~~tvllf~ar 445 (528)
T KOG0253|consen 370 LETRANCPLSVAKDYRDLLITSLAEFPGLLITG-VIVERLGRKKTMALSLILFGIFLFLLTTC---KTRNAYTVLLFTAR 445 (528)
T ss_pred HHhhhcCCccchhHHHHHHHHHHhhCCchhHHH-HHHHHhcchhHHHHHHHHHHHHHHHHHHh---cCcchhHHHHHHHH
Confidence 01 112344567777777767 99999999999999999988887655433 12222333334444
Q ss_pred hhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhcccee
Q 005307 618 VAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTI 665 (703)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~ 665 (703)
++.+..+.+.+.+..|++|.. .|++..|.- ...+.+|+++.|++.
T Consensus 446 afisg~fqvaYvYtPEVyPTa-vRatgvGtc--SsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 446 AFISGAFQVAYVYTPEVYPTA-VRATGVGTC--SSMARIGGIFSPVIA 490 (528)
T ss_pred HHHhchheEEEEecCcccchh-hhhcchhhh--hhHHhhhhhhhhHHH
Confidence 555667778899999999999 888877776 458899999999854
No 89
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.91 E-value=3.4e-21 Score=196.04 Aligned_cols=339 Identities=11% Similarity=0.022 Sum_probs=228.8
Q ss_pred ccchhHHHHhcCccchh-hhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHH
Q 005307 268 VPTADNYSLSLGAAATL-CGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGR 345 (703)
Q Consensus 268 ~~~l~~~~~~~g~s~~~-~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r 345 (703)
..+.|.+.+++|++..+ .|.+.+++..+++++.++.|+++||+|.|+++.++++.. +.+++.+++ ++++.+.+.|
T Consensus 46 s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa---~Sl~~L~i~R 122 (511)
T TIGR00806 46 SFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG---TSVWHMQLME 122 (511)
T ss_pred HHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 34567788899999999 999999999999999999999999999999999997766 999999999 9999999999
Q ss_pred HHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccccccchhHHHHHHHHHHHH
Q 005307 346 LFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKIYKLTFNEDTLPGWVMALLWLVY 423 (703)
Q Consensus 346 ~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~~~~~~~~~~f~i~~~~~~~~ 423 (703)
++.|++.|. .+...++..++|+++|+++.|+..++..+|.++++++++++ .+||+ .|+...++......++
T Consensus 123 ~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr-------~y~~Ln~Isl~s~~~a 195 (511)
T TIGR00806 123 VFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWI-------SYSTLNIISLVFMTFS 195 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-------hHHHHHHHHHHHHHHH
Confidence 999999998 88899999999999999999999999999999999999999 88883 3455555655555555
Q ss_pred HHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcc-
Q 005307 424 LLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVT- 502 (703)
Q Consensus 424 ~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 502 (703)
+++ .+++|.+++..--+++.........+ .+...+.+ ..+.....+.....
T Consensus 196 ~~~-a~~LP~~~~sl~f~~~~~~~~~~~~~---~~~~~~~~------------------------~~~~~~~~~~~~~~~ 247 (511)
T TIGR00806 196 VFL-ALFLKRPKRSLFFNRLEDVRGALPCE---LDQMVPGP------------------------GGKLEDYLGTCRDSF 247 (511)
T ss_pred HHH-HHhCCCCchhhhhccccccccccccc---cccCCCCC------------------------ccccchhhhhhhhHH
Confidence 544 45578555432211100000000000 00000000 00000000000001
Q ss_pred ---cHHHHHHhh-CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhh
Q 005307 503 ---SIMSAYRLL-TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFE 578 (703)
Q Consensus 503 ---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g 578 (703)
-+.++.... ++.++...+-..+...++....++.........+-.+...|.+-++..+.+++..+..| ++-.+..
T Consensus 248 ~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag-~~~~~w~ 326 (511)
T TIGR00806 248 LVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAG-FVNIRWA 326 (511)
T ss_pred HHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHH-hhcCCch
Confidence 122222222 67776666666666666666666555554443231223567777777778888888877 6655444
Q ss_pred hHHHHHHHHHHH-HHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhh
Q 005307 579 ERQVLLASEIIV-CIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGL 648 (703)
Q Consensus 579 ~r~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 648 (703)
+...+.++.... -.++++++.. ..+.|...++.+++...+....++...-+++....+ .-|-++|+.
T Consensus 327 ~~~~l~l~v~s~~~~gll~~m~~--t~~Iw~~Y~~yvlf~~~y~flitia~~~iA~~L~~~-~~aLvFGiN 394 (511)
T TIGR00806 327 RWSKLLIAVVSAIQAGLVFWMSQ--SHDIWVLYVTYVLFRGIYQFLVPIATFQIASSLSKE-LCALVFGIN 394 (511)
T ss_pred hhHHHHHHHHHHHHHHHhhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ceEEEEecH
Confidence 433333333322 2232333333 467888899999999888888888888888888888 778888885
No 90
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.91 E-value=4.2e-22 Score=214.12 Aligned_cols=394 Identities=10% Similarity=0.005 Sum_probs=241.8
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhccchhHHH-HhcCccchhhhHHHHHHHHHHHHHhhhhhhhccc-cCchhHHHHHHHH
Q 005307 245 YHFTSLLLNLVNTFLYMVNTYVIVPTADNYS-LSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNR-SYLKPLVFSSIVL 322 (703)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~Grr~~l~~~~~~ 322 (703)
.+++.++++++..+...++++...+.++.|. +++|.+..+.+++.+++.....+..+++|+++|| +|||++++++.+.
T Consensus 11 ~~p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~ 90 (489)
T PRK10207 11 QQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIV 90 (489)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHH
Confidence 3567788888888888888888888877775 4599999999999999999999999999999999 9999999999776
Q ss_pred H-HHHHHHHhhcccchhHH-HHHHHHHHhhcCcc--hhhhHHhhccCChh--hhhhHHHHHHHHHHHHHHHHHHhhhhh-
Q 005307 323 L-VGNTLYAMAYDLNSIAV-LLIGRLFCGLGSAR--AVNRRYISDCVPLK--LRMRASAGFVSASALGMACGPALACLF- 395 (703)
Q Consensus 323 ~-~~~~~~~~a~~~~~~~~-l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~--~R~~~~~~~~~~~~~G~~lgp~i~~~l- 395 (703)
+ +++++++++ ++... ++++|+++|+|.|. +...++++|.+|++ +|+++++++.++.++|.++||.+++++
T Consensus 91 ~~~g~~~~~~~---~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 91 LAIGYFMTGMS---LLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIA 167 (489)
T ss_pred HHHHHHHHHHh---ccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5 999999988 65444 55899999999887 88899999999877 458899999999999999999999999
Q ss_pred -cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcc-cccchhcc
Q 005307 396 -QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPL-LLNSEAKQ 473 (703)
Q Consensus 396 -~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 473 (703)
..|| |+.|++.++ +.+..++.+...++..+......+ .+. .+.....-....... ........
T Consensus 168 ~~~gw----------~~~F~i~~i-~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~d~~~~~l~~~~~~~~~~~~~~~~ 232 (489)
T PRK10207 168 DKFGY----------SVTYNLCGA-GLIIALLVYFACRGMVKDIGSEPD-HKP---MSFSKLLLVLLGSVVMIFVCAWLM 232 (489)
T ss_pred HhhCh----------HHHHHHHHH-HHHHHHHHHHHcchhhcccCCCCC-ccc---hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 7787 899998654 333333334334432211100000 000 000000000000000 00000000
Q ss_pred cCCccccccCCCCCCCCc-ccccccCCCcccHHHHHHhhCcchHHHH--HHHHHHHHHHHHHHhhhhHHhhhhccccc--
Q 005307 474 KDENDDQELDNDDHDEDD-EDSKITHRPVTSIMSAYRLLTPSVKVQL--FVYFMLKYAMEILLAESSVITEHYFIWST-- 548 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~s~-- 548 (703)
.................. ---....+. + +..+ +|.+..+. +...+.+..+....+.++.+.++..+.+.
T Consensus 233 ~~~~~~~~~~~~~~~i~~~~f~~~~~~~-~---~~~r--~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G 306 (489)
T PRK10207 233 HNVEVANLVLIVLSIVVTIIFFREAFKL-D---KTGR--NKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILG 306 (489)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcC-C---HHHH--HHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccc
Confidence 000000000000000000 000000000 0 1111 23322222 12334444455555667777764322211
Q ss_pred --hhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHH-------HHHHHHHHHHHHHhhc------cc-cccccchhHHHHH
Q 005307 549 --SRVAIFLACLGLTVLPVNIIVGNYISNIFEERQ-------VLLASEIIVCIGILLS------FH-ILVPYSVPQYVGS 612 (703)
Q Consensus 549 --~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~-------~~~~~~~~~~i~~~~~------~~-~~~~~~~~~~~~~ 612 (703)
...+.+..+..+..++...+.+ ++.+|+++|+ .+.+|+++.+++++.+ .. .....+.++.+..
T Consensus 307 ~~i~~~~~~~~n~~~iii~~pl~~-~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~ 385 (489)
T PRK10207 307 FSINPVSFQALNPFWVVVASPILA-GIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLV 385 (489)
T ss_pred eEECHHHHHhHhHHHHHHHHHHHH-HHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHH
Confidence 0123344444455556677777 8999999886 3566777766665321 11 1112345667778
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 613 ALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
.++.++|..+..+...+++.+..|++ .+|.++|+.+ ....+|+.+|..+..
T Consensus 386 ~~l~g~Ge~~~~~~g~~~~~~~aP~~-~~g~~~g~~~--l~~~ig~~lg~~l~~ 436 (489)
T PRK10207 386 YLFQSLGELFISALGLAMIAALVPQH-LMGFILGMWF--LTQAAAFLLGGYVAT 436 (489)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhChHH-HHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 88889999999999999999999999 8998888874 355677777766443
No 91
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.91 E-value=2.2e-21 Score=190.37 Aligned_cols=358 Identities=12% Similarity=0.083 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNT 327 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~ 327 (703)
.+..+....++.++......+.+|.+.+.|+++..+.+++..++..++++.+++.|++.+|+|+|.-++.++.+. +|+.
T Consensus 14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~ 93 (422)
T COG0738 14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAA 93 (422)
T ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 445555566677778888889999999999999999999999999999999999999999999999999998765 8888
Q ss_pred HHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccc--c
Q 005307 328 LYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKI--Y 402 (703)
Q Consensus 328 ~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~--~ 402 (703)
++.-+....++..++++-++.|.|.|. +++..+++.+.+++.-.+.+++.+...++|.++||++++.+ .+||.. .
T Consensus 94 lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~ 173 (422)
T COG0738 94 LFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMS 173 (422)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccC
Confidence 886443347899999999999999998 99999999999999999999999999999999999999999 655431 1
Q ss_pred cc--------ccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhccc
Q 005307 403 KL--------TFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQK 474 (703)
Q Consensus 403 ~~--------~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (703)
+. ....++++|...+...++..+.... .+.+..+...
T Consensus 174 ~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~-~k~p~~~~~~---------------------------------- 218 (422)
T COG0738 174 AAQILAIKGADASSVQFPYLILAGLLVLLAVLILL-SKLPDLQVAA---------------------------------- 218 (422)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh-ccCCcCCccc----------------------------------
Confidence 11 1234577777776665554433322 2211111000
Q ss_pred CCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHH
Q 005307 475 DENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIF 554 (703)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~ 554 (703)
+ ...........++++ +|.++...+..|++.........+++.|+.+..|.+..+.+..
T Consensus 219 ---------------~----~~~~~~~~~~~~l~~--~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~ 277 (422)
T COG0738 219 ---------------P----SLGASGSAGLSSLFQ--NKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYY 277 (422)
T ss_pred ---------------c----cccccccchHHHHHh--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 0 000001113444555 8888888899999888888999999999998889999999999
Q ss_pred HHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 005307 555 LACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRV 634 (703)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (703)
.+...++.++|+++.. ++.+|+...+.+.+..++..+-++..... .+ ...+....+.|+..+.++|...++..+.
T Consensus 278 ~s~~~~~~~vGRFig~-~lm~~~~~~k~Laf~a~~~ill~~~~~l~---~g-~v~~~~l~~ig~F~simfPTIfslal~~ 352 (422)
T COG0738 278 LSFFWVGFMVGRFIGS-ALMSRIKPEKYLAFYALIAILLLLAVALI---GG-VVALYALFLIGLFNSIMFPTIFSLALKN 352 (422)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHh---cC-hHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 9999999999997766 88889998888776654443333332222 22 3444556666888999999999999999
Q ss_pred ccCCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 635 MSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 635 ~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
.|++... .|.. .....+|+++-|.+.+ +.+..+
T Consensus 353 l~~~ts~---~s~~--l~maivGGAiiP~l~G~i~d~~g 386 (422)
T COG0738 353 LGEHTSV---GSGL--LVMAIVGGAIIPPLQGVIADMFG 386 (422)
T ss_pred cCccccc---ccee--eeeheecchHHHHHHHHHHHhhh
Confidence 9966333 2333 2255588888888666 445444
No 92
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.91 E-value=6.8e-23 Score=223.48 Aligned_cols=364 Identities=14% Similarity=0.094 Sum_probs=229.5
Q ss_pred HHHHHHHHHHHHHh--hhhhccchhHHHHhc-----Cccc--hhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHH
Q 005307 250 LLLNLVNTFLYMVN--TYVIVPTADNYSLSL-----GAAA--TLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSI 320 (703)
Q Consensus 250 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~s~--~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~ 320 (703)
.....+..+..+.+ .+...+..+.+.... ..+. .+.+|+.++..++.+++++++|+++|++|||+.++++.
T Consensus 47 ~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~ 126 (513)
T KOG0254|consen 47 ALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAV 126 (513)
T ss_pred HHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33444444444443 455666666666542 1222 34599999999999999999999999999999999997
Q ss_pred HHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-c
Q 005307 321 VLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-Q 396 (703)
Q Consensus 321 ~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~ 396 (703)
+.+ +|.++++++ +|+++++++|++.|+|.|. .+.+.|++|+.|++.||...+..+....+|..+|..++... +
T Consensus 127 ~~~~iG~ii~~~a---~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~ 203 (513)
T KOG0254|consen 127 VLFLIGAIIIALA---PSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSK 203 (513)
T ss_pred HHHHHHHHHHHHh---hhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 765 999999999 9999999999999999888 88999999999999999999999999999999997777776 4
Q ss_pred --ccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhccc
Q 005307 397 --TNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQK 474 (703)
Q Consensus 397 --~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (703)
++| |.++++..+.+++..+. .+++||+|++..++++.+++...............
T Consensus 204 ~~~~W----------r~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~------------ 260 (513)
T KOG0254|consen 204 VYAGW----------RIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDV------------ 260 (513)
T ss_pred CCccH----------HHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcch------------
Confidence 366 99999999888888877 77899999987765555444321111111000000
Q ss_pred CCccccccCCCCCCCCcccccccCCCcccHHHHHHh-hCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHH
Q 005307 475 DENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRL-LTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAI 553 (703)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~ 553 (703)
+.+.+.. .. ..............+.++..- ..++....+....+++++......++...+.+..|.+... ..
T Consensus 261 ~~~~~~~-~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~ 333 (513)
T KOG0254|consen 261 EVELELL-KI-----KLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FL 333 (513)
T ss_pred HHHHHHH-HH-----HHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HH
Confidence 0000000 00 000000000001123333321 1334444445555555554333333333334445666443 33
Q ss_pred HHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccc----c-----ccchhHHHHHHHHHH-hhhhhh
Q 005307 554 FLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHIL----V-----PYSVPQYVGSALITF-VAAEVL 623 (703)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~----~-----~~~~~~~~~~~~~~~-~~~~~~ 623 (703)
...+.+++..++..+.. ++.||+|||++++.+...+.++++++.... . ....+..++..+++. ......
T Consensus 334 ~~~~~~~v~~~~t~~~~-~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~ 412 (513)
T KOG0254|consen 334 ASIILGVVNFLGTLVAT-YLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGW 412 (513)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhccc
Confidence 33444555555555555 899999999999999888888866432110 0 011122222222222 223345
Q ss_pred hHHHHHHHHhhccCCCcccccchhh
Q 005307 624 EGVNLSLLSRVMSSRLSRGTYNGGL 648 (703)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~g~~~g~~ 648 (703)
.++.+.+.++.+|.+ .|+...+..
T Consensus 413 g~v~w~~~sEifp~~-~r~~~~s~~ 436 (513)
T KOG0254|consen 413 GPVPWVIVSEIFPLR-LRSKGASLA 436 (513)
T ss_pred ccchhhhhhccCcHh-HHhhhHHHH
Confidence 566667889999998 777655554
No 93
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.91 E-value=4.7e-22 Score=214.13 Aligned_cols=346 Identities=12% Similarity=0.079 Sum_probs=236.5
Q ss_pred HhhhhhccchhH-HHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccc----cCc-hhHHHHHHHHH-HHHHHHHhhcc
Q 005307 262 VNTYVIVPTADN-YSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNR----SYL-KPLVFSSIVLL-VGNTLYAMAYD 334 (703)
Q Consensus 262 ~~~~~~~~~l~~-~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr----~Gr-r~~l~~~~~~~-~~~~~~~~a~~ 334 (703)
+..++..+.++. +.+++|+++.++|++.++..+..++..|+.|+++|| +|| |+.++.+.+.. ++.+++.+.+.
T Consensus 13 ~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~ 92 (437)
T TIGR00792 13 FIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPD 92 (437)
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCC
Confidence 334444444444 455689999999999999999999999999999998 676 55676775544 67777766621
Q ss_pred c---chhHHHHHHHHHHhhcCcc--hhhhHHhhccC-ChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccccccccccc
Q 005307 335 L---NSIAVLLIGRLFCGLGSAR--AVNRRYISDCV-PLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTF 406 (703)
Q Consensus 335 ~---~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~-~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~ 406 (703)
. ..++.+++.+++.+++.+. +...++.+|++ ++++|++..++.+.+..+|.++++.+.+.+ ..+. ....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~---~~~~ 169 (437)
T TIGR00792 93 FSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG---GDDK 169 (437)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---Cccc
Confidence 1 1256677788888888776 66677888887 578999999999998889888877766555 2221 0112
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCC
Q 005307 407 NEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDD 486 (703)
Q Consensus 407 ~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (703)
.+|++++++.++++++..++.++..||++.....
T Consensus 170 ~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~---------------------------------------------- 203 (437)
T TIGR00792 170 FGWFMFALVLALIGVVSLIICFFGTKERYSEIPK---------------------------------------------- 203 (437)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCc----------------------------------------------
Confidence 3469999999888887776666666765421100
Q ss_pred CCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHH
Q 005307 487 HDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVN 566 (703)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~ 566 (703)
.+ ..+....+.++.+++ +|+++..++..++..++........+.|....++ ++...+.+..+..++.+++.
T Consensus 204 ---~~---~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~ 274 (437)
T TIGR00792 204 ---NI---EKKLSLKQIFKALFK--NDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGV 274 (437)
T ss_pred ---cc---ccCCCHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHH
Confidence 00 000001112333333 7777777777777777766655555556655555 45566766677777788888
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhcc-------CCC
Q 005307 567 IIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMS-------SRL 639 (703)
Q Consensus 567 ~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 639 (703)
.+.+ ++.||+|+|+.+..+..+.++++++.... +.+.+..++..++.+++.+...+...+++++..+ ++
T Consensus 275 ~~~~-~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 350 (437)
T TIGR00792 275 LLFP-RLVKKFGRKILFAGGILLMVLGYLIFFFA--GSNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVR- 350 (437)
T ss_pred HHHH-HHHHHhCcHHHHHHHHHHHHHHHHHHHHc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcc-
Confidence 8877 99999999999988888777776544333 1334455566667778888888888899888875 33
Q ss_pred cccccchhhhHHhhhhhhhhhccceee-eeccc
Q 005307 640 SRGTYNGGLLSTEAGTLARVIADGTIT-LSGYL 671 (703)
Q Consensus 640 ~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~ 671 (703)
.+|++.|.. +....+|..+++.+.+ +.+..
T Consensus 351 ~~G~~~~~~--~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 351 AEGLVYSVR--TFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred chHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc
Confidence 568778877 4477888888888776 44433
No 94
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.91 E-value=1.4e-22 Score=213.00 Aligned_cols=324 Identities=15% Similarity=0.055 Sum_probs=227.3
Q ss_pred cchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHH
Q 005307 269 PTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGRLF 347 (703)
Q Consensus 269 ~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r~l 347 (703)
+.+..+.++.+....+.|++.+++.++++++.+++|.+.||++-.+.+..+.++. +..++.... +|++.+++.|++
T Consensus 67 a~l~g~~edl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~---~s~~~~ialr~l 143 (495)
T KOG2533|consen 67 ASLSGLKEDLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAV---HSFPGLIALRFL 143 (495)
T ss_pred HHHcCCccccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHH
Confidence 3333455778888899999999999999999999999999999666666554443 555555557 899999999999
Q ss_pred HhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccccccchhHHHHHHHHHHHHH
Q 005307 348 CGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKIYKLTFNEDTLPGWVMALLWLVYL 424 (703)
Q Consensus 348 ~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~~~~~~~~~~f~i~~~~~~~~~ 424 (703)
.|+..+. |....+++.|+.+++|+..+|++.++.++|.++|.+++..+ ... +.....+|||.|++.+++.++..
T Consensus 144 lGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~---~~~~~~gW~~~FiI~G~i~~~~g 220 (495)
T KOG2533|consen 144 LGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLN---GSGGLAGWRWLFIIEGVITLVLG 220 (495)
T ss_pred HHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhc---CCCCcCCceeehhHHHHHHHHHH
Confidence 9999777 99999999999999999999999999999999999999884 200 01123345999999999999999
Q ss_pred HHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccH
Q 005307 425 LWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSI 504 (703)
Q Consensus 425 i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (703)
+++++++|+.|....-..++++.. ..++.++. .... ..+..+...+
T Consensus 221 i~~f~~lp~~P~~~~fl~~~ek~~-------------------------~~~~~~~~--------~~~~-~~~~~~~~~~ 266 (495)
T KOG2533|consen 221 IVVFFFLPDNPSKAWFLTDEEKEL-------------------------VVERLRES--------PSGG-IENKFKWKGF 266 (495)
T ss_pred heEEEEecCChhhccccchHHHHH-------------------------HHHHHHhc--------cCCC-cccccCHHHH
Confidence 999999999987432100000000 00000000 0000 0000112233
Q ss_pred HHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhh----hhhH
Q 005307 505 MSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNI----FEER 580 (703)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r----~g~r 580 (703)
++.++ .|.+|...+..++.....+++.+++|.++.+..|++..+++.+.....++++++.++.+ +++|| ..+|
T Consensus 267 ~~a~~--dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag-~lsdr~~~~~~~~ 343 (495)
T KOG2533|consen 267 KEALK--DPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAG-YLSDRLKTIFARR 343 (495)
T ss_pred HHHHh--chhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHH-HHHHHHhhhHHHH
Confidence 33333 99999999999999999999999999999986779999999999999999999998888 99999 4555
Q ss_pred HHHHHHHHHH-HHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCC
Q 005307 581 QVLLASEIIV-CIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSR 638 (703)
Q Consensus 581 ~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (703)
........+. .++.+.+... ..........+....+.....+......++.....
T Consensus 344 ~~~~~~~~~~~~~g~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~ 399 (495)
T KOG2533|consen 344 LLFIVFLCLYAIIGAISLLAA---AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGN 399 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhh---ccchHHhHHHHhcchhhHHHHHHHHhhccccccch
Confidence 5544443333 3332222222 11112222222223444556667777777777666
No 95
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.90 E-value=9.3e-21 Score=199.06 Aligned_cols=366 Identities=14% Similarity=0.055 Sum_probs=249.6
Q ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhcc----ccCchhHHHHH-HHHH-
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSN----RSYLKPLVFSS-IVLL- 323 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~D----r~Grr~~l~~~-~~~~- 323 (703)
++.+....+-..++++...+.++.|.+++|.++...+++..+..+..++.+|++|+++| |+|||+.++.+ .+..
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~ 85 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA 85 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH
Confidence 44455555556777888888999999999999999999999999999999999999999 59998877664 4444
Q ss_pred HHHHHHHhhcccchhH-----------------HHHHHHHHHhhcCcc--hhhhHHhhccCChhhh--hhHHHHHHHHHH
Q 005307 324 VGNTLYAMAYDLNSIA-----------------VLLIGRLFCGLGSAR--AVNRRYISDCVPLKLR--MRASAGFVSASA 382 (703)
Q Consensus 324 ~~~~~~~~a~~~~~~~-----------------~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R--~~~~~~~~~~~~ 382 (703)
++.++.+++ ++++ .++++-.+..++... +...++++|.+|+++| +.++++.+...+
T Consensus 86 ~~l~ll~~~---~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~ 162 (477)
T TIGR01301 86 FAVILIGFA---ADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMA 162 (477)
T ss_pred HHHHHHHhC---chhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHH
Confidence 666777776 4432 233333344445554 7788999999998865 579999999999
Q ss_pred HHHHHHHHhhhhh-c---ccccc---cccccccchhHHHHHHHHHHHHHHHHHHhccCCCcccccccccccccccccccc
Q 005307 383 LGMACGPALACLF-Q---TNFKI---YKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINC 455 (703)
Q Consensus 383 ~G~~lgp~i~~~l-~---~g~~~---~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~ 455 (703)
+|.++|+.+|++. . .++.. .+..-..+++.|++.+++.+++.++..+..||.+....+....
T Consensus 163 lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~----------- 231 (477)
T TIGR01301 163 IGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFIN----------- 231 (477)
T ss_pred HHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchh-----------
Confidence 9999999999875 1 12210 0111135699999999999888888888889976432210000
Q ss_pred ccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHh---hCcchHHHHHHHHHHHHHHHHH
Q 005307 456 TVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRL---LTPSVKVQLFVYFMLKYAMEIL 532 (703)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 532 (703)
++.+ .. .+......++++++. .-+.++.++++.++.++++..+
T Consensus 232 --------------------~~~~----------~~----~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~ 277 (477)
T TIGR01301 232 --------------------SEAA----------PP----SKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPF 277 (477)
T ss_pred --------------------hhcc----------cc----cccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 000011233443332 2677888999999999999998
Q ss_pred HhhhhHHhhh-hccccchh-----H----H-HHHHhhhhhhhhHHHHHHhhhhhhhhh-HHHHHHHHHHHHHHHhhcccc
Q 005307 533 LAESSVITEH-YFIWSTSR-----V----A-IFLACLGLTVLPVNIIVGNYISNIFEE-RQVLLASEIIVCIGILLSFHI 600 (703)
Q Consensus 533 ~~~~~~~~~~-~~g~s~~~-----~----g-~~~~~~~~~~~~~~~~~~~~l~~r~g~-r~~~~~~~~~~~i~~~~~~~~ 600 (703)
..+.+.|..+ .|+-++.. . | +...+.++...+.++++. ++.+++|+ |.+..++.++.++++......
T Consensus 278 ~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~-~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i 356 (477)
T TIGR01301 278 ILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGME-KLCRGWGAGKRLWGIVNIILAICLAATVLV 356 (477)
T ss_pred HHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence 8888887764 45543321 1 2 233444455556666666 88999985 666688877777776544322
Q ss_pred cc-c----------------cc-hhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCC-CcccccchhhhHHhhhhhhhhhc
Q 005307 601 LV-P----------------YS-VPQYVGSALITFVAAEVLEGVNLSLLSRVMSSR-LSRGTYNGGLLSTEAGTLARVIA 661 (703)
Q Consensus 601 ~~-~----------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~g~~~g 661 (703)
.. + .. .+..++...+.|+.......+-++++++..+++ ...|..+|+.|. +..+.+.+.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~--~I~lpQii~ 434 (477)
T TIGR01301 357 TYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNL--AIVIPQIIV 434 (477)
T ss_pred HhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHH--HHHHHHHHH
Confidence 10 0 00 255666777778888899999999999999953 157999999966 444777777
Q ss_pred cceee
Q 005307 662 DGTIT 666 (703)
Q Consensus 662 p~~~~ 666 (703)
.+..+
T Consensus 435 sl~~g 439 (477)
T TIGR01301 435 SLGSG 439 (477)
T ss_pred HHHHH
Confidence 76444
No 96
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.90 E-value=1.4e-22 Score=223.73 Aligned_cols=307 Identities=13% Similarity=0.128 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHH
Q 005307 252 LNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYA 330 (703)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~ 330 (703)
.+.+..+...+..+...++++.+.++|++++.+.|++.+.+.++.+++.++.|+++||+|||+++.+++++. +++++++
T Consensus 37 ~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~a 116 (633)
T TIGR00805 37 LLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLS 116 (633)
T ss_pred HHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHh
Confidence 333455666667788889999999999999999999999999999999999999999999999998887655 9999888
Q ss_pred hhcc------------------------------------------------cchhHHHHHHHHHHhhcCcc--hhhhHH
Q 005307 331 MAYD------------------------------------------------LNSIAVLLIGRLFCGLGSAR--AVNRRY 360 (703)
Q Consensus 331 ~a~~------------------------------------------------~~~~~~l~i~r~l~Gi~~g~--~~~~~~ 360 (703)
+.+. ...+..++++|+++|+|.+. +...++
T Consensus 117 lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~ 196 (633)
T TIGR00805 117 LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISY 196 (633)
T ss_pred ChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchh
Confidence 7620 00256788999999999887 889999
Q ss_pred hhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-c--cccccc--------c--ccc-ccchhHHHHHHHHHHHHHHH
Q 005307 361 ISDCVPLKLRMRASAGFVSASALGMACGPALACLF-Q--TNFKIY--------K--LTF-NEDTLPGWVMALLWLVYLLW 426 (703)
Q Consensus 361 i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~--~g~~~~--------~--~~~-~~~~~~f~i~~~~~~~~~i~ 426 (703)
+.|++|+++|++++|++..+..+|.++|+++++++ . .+|... + ..+ .+|+..|++.+++.++..+.
T Consensus 197 i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~ 276 (633)
T TIGR00805 197 IDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP 276 (633)
T ss_pred hhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 2 244210 0 111 24788888888887776655
Q ss_pred HHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHH
Q 005307 427 LWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMS 506 (703)
Q Consensus 427 ~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (703)
. +++|+..+......+. +.. +.+.. .+.+ ...............+.
T Consensus 277 l-~~~p~~lp~~~~~~~~-~~~----~~~~~------------------~~~~----------~~~~~~~~~~~~~~~~~ 322 (633)
T TIGR00805 277 F-FFFPKALPKEGKRVNV-DVH----ETEKL------------------EKSE----------DKSRKKNSDITKDFPKI 322 (633)
T ss_pred H-HhCccccCCcccccch-hhh----hhhcc------------------cccc----------cccchhhhhhHHHHHHH
Confidence 4 4466543221110000 000 00000 0000 00000000000111122
Q ss_pred HHHhh-CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhh-hhHHHHHHhhhhhhhh--hHHH
Q 005307 507 AYRLL-TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTV-LPVNIIVGNYISNIFE--ERQV 582 (703)
Q Consensus 507 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~-~~~~~~~~~~l~~r~g--~r~~ 582 (703)
.+++. +|.++...+..++...+..++.+++|.|+++.+|+++.+++++.++..+.+ +++.++ +++++||++ .|+.
T Consensus 323 ~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l-~G~l~~r~~~~~~~~ 401 (633)
T TIGR00805 323 IKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLI-GGFIMKKFKLNVKKA 401 (633)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhh-hhheeeeecccHHHH
Confidence 22332 888888888889999999999999999999999999999999988777644 455555 449999987 4566
Q ss_pred HHHHHHHHHHH
Q 005307 583 LLASEIIVCIG 593 (703)
Q Consensus 583 ~~~~~~~~~i~ 593 (703)
+.+++++..++
T Consensus 402 ~~~~~~~~~~~ 412 (633)
T TIGR00805 402 AYFAICLSTLS 412 (633)
T ss_pred HHHHHHHHHHH
Confidence 66665555444
No 97
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.89 E-value=3.7e-22 Score=219.15 Aligned_cols=350 Identities=18% Similarity=0.140 Sum_probs=231.4
Q ss_pred HhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc
Q 005307 276 LSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR 354 (703)
Q Consensus 276 ~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~ 354 (703)
+.+..+.....+..+++.+|.++|++++|+++||+|||+++++++++. ++.++.+++ +|++.+++.|++.|++.+.
T Consensus 111 ~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a---~~~~~~~~~Rfl~G~~~~~ 187 (521)
T KOG0255|consen 111 NLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFA---PNYWMFLIFRFLSGFFGSG 187 (521)
T ss_pred ceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHh---CcHHHHHHHHHHHHhhccc
Confidence 445678889999999999999999999999999999999999998765 888999999 9999999999999999877
Q ss_pred --hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHHhcc
Q 005307 355 --AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLFQTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFR 432 (703)
Q Consensus 355 --~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~ 432 (703)
.++..+++|++++++|+.+.++ ......|..++|++++++.-+| |+.+|+..++.++.+++ +++.|
T Consensus 188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~W----------r~~~~~~~~~~~~~~~~-~~l~~ 255 (521)
T KOG0255|consen 188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDW----------RWLFWIISIPSGLFLLL-WFLPP 255 (521)
T ss_pred hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHHHH-HHccC
Confidence 8899999999999999999999 7777888888888888883377 99999999888877766 55567
Q ss_pred CCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhC
Q 005307 433 EPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLT 512 (703)
Q Consensus 433 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (703)
|+|++...+++.+++.+..++..+.+.....+ ........ ...........+...+.++++ .
T Consensus 256 Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~----------~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~--~ 317 (521)
T KOG0255|consen 256 ESPRWLLSKGRIDEAIKILKKIAKLNGRKLSV----------KELLRLEL------LLRPLKLLFTEPKISFLDLFR--T 317 (521)
T ss_pred cChHHHHHcCchHHHHHHHHHHHhhcCCCCCc----------HHHHHHHH------HhhHhhhhccCCCCchhhhhc--C
Confidence 99998877666555432222211111000000 00000000 000000011111123444444 4
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 005307 513 PSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCI 592 (703)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i 592 (703)
+++....+...+.++.........+. ....+|.+. .+.....+....+.....+ ...+++|||.....+..+..+
T Consensus 318 ~~l~~~~~~~~~~~~~~~~~y~gl~~-~~~~lg~~~---~~~~~~~~~~~~p~~~~~~-~~~~~~gR~~~~~~~~~~~~~ 392 (521)
T KOG0255|consen 318 PRLRYRTLYLLFIWFVFSLVYYGLSL-NVSGLGGNI---YLNFTLSGLVELPAYFRNG-LLLPEFGRRPPLFLSLFLAGI 392 (521)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhh-hhhhcCchH---HHHHHHHHHHHhhHHHHHH-HHHHHhCcHHHHHHHHHHHHH
Confidence 44444444444444333222222222 222233332 2333444445555555555 888999999999999888888
Q ss_pred HHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 593 GILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+++...........+...+...+..++.+......+.+..+.+|+. .|+.+.+.. .....+|.+++|.+..
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~-~r~~~~~~~--~~~~~~~~i~ap~~~~ 463 (521)
T KOG0255|consen 393 GLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTV-VRNTAVGAI--SAAARLGSILAPLFPL 463 (521)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 8765444321121123334444444555566667788999999998 788777776 4588899999998554
No 98
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1e-20 Score=201.38 Aligned_cols=402 Identities=12% Similarity=0.077 Sum_probs=274.0
Q ss_pred cccchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHH
Q 005307 242 EQRYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIV 321 (703)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~ 321 (703)
+..+.|..+...+++.+...-.......+.+.++++++.+..+++|+.++......+..|+.+.+.||+|.|++.+.|.+
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~ 119 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGL 119 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHH
Confidence 55677876666655555444434444467788999999999999999999999999999999999999999988888755
Q ss_pred -HHHHHHHHHhhcccchhHHHHHHH-HHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--
Q 005307 322 -LLVGNTLYAMAYDLNSIAVLLIGR-LFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-- 395 (703)
Q Consensus 322 -~~~~~~~~~~a~~~~~~~~l~i~r-~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-- 395 (703)
..+|.++.+++ +++|.+++.. ++.|+|.|. ..+...+.. +.+++|+.+.|+...+.++|.++-|.+...+
T Consensus 120 v~~~g~~lssF~---~~i~~l~lt~gvi~G~G~~~~~~paiviv~~-YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~ 195 (509)
T KOG2504|consen 120 VAALGLLLSSFA---TSLWQLYLTFGVIGGLGLGLIYLPAVVILGT-YFEKKRALATGIAVSGTGVGTVVFPPLLKYLLS 195 (509)
T ss_pred HHHHHHHHHHHH---hhHHHHHHHHHHHhhccchhhhcchhhhhhh-HhHHHHHHHHhhhhccCCcceeeHHHHHHHHHH
Confidence 55999999999 9999988776 678999998 445555554 4568899999999999999998888888777
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccc-hhccc
Q 005307 396 QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNS-EAKQK 474 (703)
Q Consensus 396 ~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 474 (703)
..|| |+.+++.+.+.+-.++.....-|.++..... ..+..+. .....+ ....+..... ..+..
T Consensus 196 ~~G~----------r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~ 259 (509)
T KOG2504|consen 196 KYGW----------RGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRN--SAASVE-STPKPVELRISERDSG 259 (509)
T ss_pred HhCc----------HHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhcc--cccccc-ccccccccccccCCCC
Confidence 8898 8999999888877666666655544432221 0000000 000000 0000000000 00000
Q ss_pred CCccccccCCCCCCCCcccccccCCCcccH--HHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHH
Q 005307 475 DENDDQELDNDDHDEDDEDSKITHRPVTSI--MSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVA 552 (703)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g 552 (703)
..+ ... .+.......+............ -++..++++.++.+.+...+..+++.....++|.|.. ..|++..+++
T Consensus 260 ~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa 336 (509)
T KOG2504|consen 260 LKK-LSL-SNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAA 336 (509)
T ss_pred CCc-ccc-cchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhH
Confidence 000 000 0000000000000000111111 1233333888888888889999999999999999988 5799999999
Q ss_pred HHHHhhhhhhhhHHHHHHhhhhhhhhhHHHH--HHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHH
Q 005307 553 IFLACLGLTVLPVNIIVGNYISNIFEERQVL--LASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSL 630 (703)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (703)
.++++.++..+++.++.| ++.|+...++.. .++.++.+++.+.+ +. .++.+.++...+++|+..+.........
T Consensus 337 ~l~Siigi~~i~gRi~~G-~laD~~~~~~~~~~~~~ll~~gl~~~~~-p~--~~~~~~l~~~~~~fG~~~g~~~~l~~~i 412 (509)
T KOG2504|consen 337 FLLSIIGVSDIIGRIILG-LLADKPGIRALVLFLLTLLIAGLARLFL-PF--ATTYVGLIVFSILFGFCVGSFSSLTPVI 412 (509)
T ss_pred HHHHHHHHhhhhhhhhhh-hhcCccccchHHHHHHHHHHHHHHHHHH-HH--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999998844443 44444444443222 22 3667788888888899888888777788
Q ss_pred HHhhccCCCcccccchhhhHHhhhhhhhhhccceee-eeccccC
Q 005307 631 LSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLGE 673 (703)
Q Consensus 631 ~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~~ 673 (703)
+.+.++.+ +-..+.|+. ..+..++..+||++.+ +.+..++
T Consensus 413 ~~~~~g~~-~l~~a~Gl~--l~~~gi~~l~gpPiag~~~d~tg~ 453 (509)
T KOG2504|consen 413 LVDLVGLE-KLSNAYGLL--LLFQGIGALVGPPIAGLLYDITGN 453 (509)
T ss_pred HHHHcChh-hcchHHHHH--HHHhHHHHHcCcccceeeeeccCC
Confidence 99999988 777788988 5588899999999777 5565553
No 99
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=99.89 E-value=3.2e-26 Score=247.42 Aligned_cols=373 Identities=19% Similarity=0.162 Sum_probs=235.5
Q ss_pred HHHHHHHHHhhhhhccchhHHH--HhcCc---------cchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH
Q 005307 254 LVNTFLYMVNTYVIVPTADNYS--LSLGA---------AATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL 322 (703)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~--~~~g~---------s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~ 322 (703)
.++.+..+++.+.+....+... ..++. +..+.+++.++..+|.++|++++|.++||+|||+.++++.++
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~ 85 (451)
T PF00083_consen 6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL 85 (451)
T ss_pred HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 3445677777766655554443 22221 234578999999999999999999999999999999999775
Q ss_pred H-HHHHHHHhhcccc---hhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-
Q 005307 323 L-VGNTLYAMAYDLN---SIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF- 395 (703)
Q Consensus 323 ~-~~~~~~~~a~~~~---~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l- 395 (703)
. +++++.+++ + +++.++++|++.|++.|. ++...|+.|..|++.|++..++.+.+..+|.+++..++..+
T Consensus 86 ~~i~~~~~~~~---~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~ 162 (451)
T PF00083_consen 86 MIIGSILIAFA---PSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVS 162 (451)
T ss_pred ccccccccccc---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5 999999999 8 999999999999999887 89999999999999999999999999999999988877655
Q ss_pred c-ccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhccc
Q 005307 396 Q-TNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQK 474 (703)
Q Consensus 396 ~-~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (703)
. .+ .+.||+.+++..+++++.++. .+++||+|++...+++.+++.+...+.++.+ ..
T Consensus 163 ~~~~-------~~~Wr~~~~~~~~~~l~~~~~-~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~--------------~~ 220 (451)
T PF00083_consen 163 YYSD-------NWGWRILLIFGAIPSLLVLLL-RFFLPESPRWLLSKGRDEEAEKVLRKLRGKE--------------IE 220 (451)
T ss_pred cccc-------ccccccccccccccccccccc-ccccccccceecccccccccccccccccccc--------------cc
Confidence 1 12 112489988888887765544 4678999999877666655532222211110 00
Q ss_pred CCccccccCCCCCCCCcccccccCCCcccHHHHHHhh--CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHH
Q 005307 475 DENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLL--TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVA 552 (703)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g 552 (703)
+++.++.. .+.++..+....++++++.. .+++...+...++..+.......++...+.+..|.+.. -
T Consensus 221 ~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~ 289 (451)
T PF00083_consen 221 DEEIEEIK---------AEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--F 289 (451)
T ss_pred cccccccc---------cccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--c
Confidence 00000000 00000000012344444321 22344444444444344333333444444455566665 1
Q ss_pred HHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhcc---ccccccc---hhHHHHHHHHHHhhhh-hhhH
Q 005307 553 IFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSF---HILVPYS---VPQYVGSALITFVAAE-VLEG 625 (703)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~-~~~~ 625 (703)
....+.++...++..+.. ++.||+|||++++.+..+++++.+.+. ......+ ....++...+...+++ ...+
T Consensus 290 ~~~~~~~~~~~~~~~~~~-~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~ 368 (451)
T PF00083_consen 290 LATLILGLVNFLGTLLAI-FLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGP 368 (451)
T ss_pred cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccc
Confidence 112233344444444444 888999999999888887777755442 1111111 1122222222222333 4456
Q ss_pred HHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 626 VNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 626 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
..+.+.+|.+|.+ .|++..|.. ...+.++.+++|.+..
T Consensus 369 ~~~~~~~ElfPt~-~R~~~~~~~--~~~~~i~~~i~~~~~~ 406 (451)
T PF00083_consen 369 LPWIYTAELFPTK-VRSTGIGLS--YAVGRIGGFIIPFLFP 406 (451)
T ss_pred ccccccccccccc-ccccccccc--cccccccccccccccc
Confidence 6678889999999 888888887 4466788888777444
No 100
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.88 E-value=1.6e-20 Score=199.52 Aligned_cols=377 Identities=11% Similarity=0.031 Sum_probs=237.8
Q ss_pred HhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHH
Q 005307 262 VNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAV 340 (703)
Q Consensus 262 ~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~ 340 (703)
+.......+++.+..++|-+ ...+|+.++..++..++.++.|+++|.||||.+++++.++. +|+++++-+ +|...
T Consensus 58 ~~~~~~a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA---~~~~~ 133 (599)
T PF06609_consen 58 FVLVLPASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATA---QNMNT 133 (599)
T ss_pred HHHhccHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcC---CcHHH
Confidence 34444456678888999865 67889999999999999999999999999999999997655 999999999 99999
Q ss_pred HHHHHHHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHH
Q 005307 341 LLIGRLFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMA 417 (703)
Q Consensus 341 l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~ 417 (703)
++++..+.|+|.|. ......++|..|.+.|+...++......+...+||.++..+ ..+| ||.|++.+
T Consensus 134 ~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~W----------Rw~~~~~~ 203 (599)
T PF06609_consen 134 FIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGW----------RWIFYIFI 203 (599)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCc----------chHHHHHH
Confidence 99999999999888 66677799999999999888877776666666788888766 5677 99999999
Q ss_pred HHHHHHHHHHHHhccCCCcccc-cccc-cccccccccccc-------------ccCCC-C-CCcccccchhcccCCcccc
Q 005307 418 LLWLVYLLWLWISFREPPLETK-ENLV-PQEANAGLLINC-------------TVDNG-S-TRPLLLNSEAKQKDENDDQ 480 (703)
Q Consensus 418 ~~~~~~~i~~~~~l~e~~~~~~-~~~~-~~~~~~~~~~~~-------------~~~~~-~-~~~~~~~~~~~~~~~~~~~ 480 (703)
++..+.+++.+++...+++... .++. ..+..++.|-.. ....+ . ..||.... .-..-..
T Consensus 204 i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~---VIa~lvi- 279 (599)
T PF06609_consen 204 IWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAH---VIAPLVI- 279 (599)
T ss_pred HHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCcc---chhhHHH-
Confidence 9888777665554433322211 1000 000000000000 00000 0 01110000 0000000
Q ss_pred ccCCCCCCCCccccccc-CCCcccHHHHHHhhC-cchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccch---hHHHHH
Q 005307 481 ELDNDDHDEDDEDSKIT-HRPVTSIMSAYRLLT-PSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTS---RVAIFL 555 (703)
Q Consensus 481 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~---~~g~~~ 555 (703)
+-. .-..-.-++. ..++.++...+.+.+ |.+...+++.++..+.++....++|......++-++. ..++..
T Consensus 280 ---G~~-~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s 355 (599)
T PF06609_consen 280 ---GFV-LLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWIS 355 (599)
T ss_pred ---HHH-HHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhh
Confidence 000 0000000010 011222222222224 4455556666777777777778889888877776653 456676
Q ss_pred HhhhhhhhhHHHHHHhhhhhhhhhHHHH-HHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 005307 556 ACLGLTVLPVNIIVGNYISNIFEERQVL-LASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRV 634 (703)
Q Consensus 556 ~~~~~~~~~~~~~~~~~l~~r~g~r~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (703)
...+++..++..+++ .+..++++-|.. +++.+++.+++..+.... +.+....+...++.+++.+..........+-.
T Consensus 356 ~~~~fg~~~g~~i~g-~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~-~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~ 433 (599)
T PF06609_consen 356 SPVGFGSCAGAVILG-LLFSKIRHIKWQLIFGSVLMTAFCGAMAAVR-PDNKNAAIAFLVLAGFGIGGILVPAIVIAQLI 433 (599)
T ss_pred hhHHHHHHHHHHHHH-HHHHHccchhHHHHHHHHHHHHHHHHHHHcc-CCCcchHHHHHHHHHHhHHHHHHHHHHeeEee
Confidence 777777777777777 777777765544 466555554433332222 22223334556677788887777777777788
Q ss_pred ccCCCcccccchhhhHHhhhhhhhhhcccee
Q 005307 635 MSSRLSRGTYNGGLLSTEAGTLARVIADGTI 665 (703)
Q Consensus 635 ~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~ 665 (703)
.|++ ..|++.|+. .....+|+.+|..+.
T Consensus 434 ~p~~-~ig~a~gL~--~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 434 VPDE-DIGTATGLT--GSIRSIGGSIGYAIY 461 (599)
T ss_pred eCch-HHHHHHHHH--HHHHHHhhHHHHHHH
Confidence 8888 888888887 337778777776633
No 101
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.88 E-value=3.3e-20 Score=179.16 Aligned_cols=352 Identities=15% Similarity=0.147 Sum_probs=259.0
Q ss_pred hhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHH
Q 005307 263 NTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVL 341 (703)
Q Consensus 263 ~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l 341 (703)
....+.|.++.+.+++|+|.+..|+++++..++..+.+|+..+++.|+|-.+.+..++++. +|.++-... +.+.+
T Consensus 27 ~itsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~----~~~~L 102 (395)
T COG2807 27 AITSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG----GLPLL 102 (395)
T ss_pred hhhhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc----cHHHH
Confidence 5677789999999999999999999999999999999999999999999999999887755 888877764 78889
Q ss_pred HHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cc-cccccccccccchhHHHHH
Q 005307 342 LIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QT-NFKIYKLTFNEDTLPGWVM 416 (703)
Q Consensus 342 ~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~-g~~~~~~~~~~~~~~f~i~ 416 (703)
+.+-.+.|.|.+. ...++.|-+.+| ++-+..+|+|.++..+|..+++.+.-.+ +. || |....+-
T Consensus 103 ~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW----------~~aL~~W 171 (395)
T COG2807 103 FLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGW----------RGALGFW 171 (395)
T ss_pred HHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccH----------HHHHHHH
Confidence 9999999999887 889999999998 4569999999999999999999998888 33 57 7877777
Q ss_pred HHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccc
Q 005307 417 ALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKI 496 (703)
Q Consensus 417 ~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (703)
+.++++++++. +|...+.....
T Consensus 172 Al~allAl~~W---lPq~~r~~~~~------------------------------------------------------- 193 (395)
T COG2807 172 ALLALLALLIW---LPQALREQAAS------------------------------------------------------- 193 (395)
T ss_pred HHHHHHHHHHH---hhhcccccccc-------------------------------------------------------
Confidence 77776666443 34432211100
Q ss_pred cCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhh
Q 005307 497 THRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNI 576 (703)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r 576 (703)
......+-..+++ +|..|.+.+.+.++++.++....++|.++.+. |+|..++|.+.++..+..++.++... .+.+|
T Consensus 194 ~~~~~~~~~~vw~--~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~-G~sa~~aG~llsl~~l~~~~~~ll~P-~la~R 269 (395)
T COG2807 194 IATKLVSVRKVWR--SPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR-GLSAAEAGSLLSLMQLAQLPTALLIP-LLARR 269 (395)
T ss_pred ccccccccccccc--CchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc-CCCHHHhhhHHHHHHHHHHHHHHHHH-HHHHH
Confidence 0000011112333 78899999999999999999999999999885 99999999999999999999998877 88876
Q ss_pred h-hhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhh
Q 005307 577 F-EERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGT 655 (703)
Q Consensus 577 ~-g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~ 655 (703)
. ++|........++.++++.+...+ ...++.+ .+++|+|.+..++...+++....++....+...|.. +.++.
T Consensus 270 ~~n~r~~~~~~~~~~l~G~~G~~~~P-~~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgma--Qg~GY 343 (395)
T COG2807 270 SKNQRPLVVLALLLMLVGLVGLLLAP-GQLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMA--QGVGY 343 (395)
T ss_pred hcccchHHHHHHHHHHHHHHHHHHhh-hhHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHh--hhhhH
Confidence 4 455565666666777765433331 2222222 577799999999999999888877662334434444 44667
Q ss_pred hhhhhccceee-eeccccCCcccccchhHHHHHHHHHHHHHHHhhc
Q 005307 656 LARVIADGTIT-LSGYLGESRLLNVTLLPSLFICISSIVATCITYN 700 (703)
Q Consensus 656 ~g~~~gp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (703)
+-..+||.+.+ +.+..+. +......+.++++++.+..+...|
T Consensus 344 llAa~GP~l~G~lhDa~gs---w~~~~~~l~~~~i~m~i~Gl~a~r 386 (395)
T COG2807 344 LLAAFGPWLFGFLHDATGS---WSAPLVLLALATLLMLIFGLRAGR 386 (395)
T ss_pred HHHhhhhhhHhHHHHhcCC---hHHHHHHHHHHHHHHHHHHhhcch
Confidence 77888999555 3344442 233344444445555544444433
No 102
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.88 E-value=5.1e-20 Score=191.50 Aligned_cols=350 Identities=15% Similarity=0.141 Sum_probs=245.8
Q ss_pred HHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccC-chhHHHHHHHH-HHHHHHHHh
Q 005307 254 LVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSY-LKPLVFSSIVL-LVGNTLYAM 331 (703)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~G-rr~~l~~~~~~-~~~~~~~~~ 331 (703)
....++.....+...|.+|.+.++.|.|..++|++.++..+..+++++++|.++||++ +|+++.++.+. .+.......
T Consensus 8 s~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~ 87 (400)
T PF03825_consen 8 SLMYFLYFFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF 87 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777888889999999999999999999999999999999999999999987 46666665443 355555566
Q ss_pred hcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHh-hhhh--ccccccccccc
Q 005307 332 AYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPAL-ACLF--QTNFKIYKLTF 406 (703)
Q Consensus 332 a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i-~~~l--~~g~~~~~~~~ 406 (703)
. ++++.+++.-++..+.... |...++..+... +++.-.|-.....++|.+++... ++++ ..++
T Consensus 88 ~---~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~------- 155 (400)
T PF03825_consen 88 S---SSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGI------- 155 (400)
T ss_pred h---ccHHHHHHHHHHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhcc-------
Confidence 6 7888888887777776544 777777666654 44566677777777887777543 2222 2222
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCC
Q 005307 407 NEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDD 486 (703)
Q Consensus 407 ~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (703)
....+.+++.+++.++.... .+.+|+.|+++..++
T Consensus 156 ~~~~~~~~i~~~~~~ll~~~-~l~lp~~~~~~~~~~-------------------------------------------- 190 (400)
T PF03825_consen 156 SGTSLIFYIAAILSLLLAGF-ALFLPKTPPKRSAKE-------------------------------------------- 190 (400)
T ss_pred ccccHHHHHHHHHHHHHHHH-HHhCCCCccccccCC--------------------------------------------
Confidence 01145566666555444333 344677763221100
Q ss_pred CCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHH
Q 005307 487 HDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVN 566 (703)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~ 566 (703)
..+.....+...+.+ +|+++..++..++...+...+.++.+.|+++.-|.+....|..+++..+..++..
T Consensus 191 --------~~~~~~~~~~~~llk--~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f 260 (400)
T PF03825_consen 191 --------SVKKLLGLDALKLLK--NPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFF 260 (400)
T ss_pred --------CcccccchHHHHHhc--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHH
Confidence 000000111122333 8888888888888888888888999999988654777888888888777887777
Q ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhH----HHHHHHHHHhhhhhhhHHHHHHHHhhccCCCccc
Q 005307 567 IIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQ----YVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRG 642 (703)
Q Consensus 567 ~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 642 (703)
...+ ++.+|+|.++++.++.+..++-..+..... ++.+. ..+...+.|+.++........++.+..|++ .++
T Consensus 261 ~~~~-~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~--~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~-~~a 336 (400)
T PF03825_consen 261 FFSG-RFLKRFGIKWLLLLALVAYAVRWLLYAYFS--DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPE-LRA 336 (400)
T ss_pred HHHH-HHHHhcCHHHHHHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcc-chH
Confidence 7767 999999999999999988888755443331 22222 223345689999999999999999999999 888
Q ss_pred ccchhhhHHhhhhhhhhhccceee-eeccccCCc
Q 005307 643 TYNGGLLSTEAGTLARVIADGTIT-LSGYLGESR 675 (703)
Q Consensus 643 ~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~~~~ 675 (703)
++.|++... ...+|..+|..++| +++..+...
T Consensus 337 t~Q~l~~~~-~~Glg~~iG~~igG~l~~~~g~~~ 369 (400)
T PF03825_consen 337 TAQGLYSAL-SFGLGGAIGSLIGGWLYDAFGARG 369 (400)
T ss_pred HHHHHHHHH-HhhHHHHHHHHHHHHHHHHhcchh
Confidence 889987543 56789999998777 666666443
No 103
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.88 E-value=4e-20 Score=200.12 Aligned_cols=381 Identities=10% Similarity=0.018 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHH-HhcCccchhhhHHHHHHHHHHHHHhhhhhhhccc-cCchhHHHHHHHHH-H
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYS-LSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNR-SYLKPLVFSSIVLL-V 324 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~Grr~~l~~~~~~~-~ 324 (703)
+.++.+++..++..++++...+.++.+. +++|.+..+.+++.+.+........+++|+++|| +|||++++++.++. +
T Consensus 21 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~i 100 (500)
T PRK09584 21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAI 100 (500)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 3456777777888888777777777776 6699999999999888877777777899999999 59999999887655 8
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChh--hhhhHHHHHHHHHHHHHHHHHHhhhhh--ccc
Q 005307 325 GNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLK--LRMRASAGFVSASALGMACGPALACLF--QTN 398 (703)
Q Consensus 325 ~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~--~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g 398 (703)
+.++++++. ++.+.++++|++.|+|.|. +...++++|++|++ +|+.++++++++.++|.++||.+++++ ..|
T Consensus 101 g~~l~~~~~--~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g 178 (500)
T PRK09584 101 GYALVAWSG--HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG 178 (500)
T ss_pred HHHHHHHhc--ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 888888761 3466778899999999886 77889999999864 355688999999999999999999999 678
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHH---HHhccCCCccccccccccccccccccccccCCCCCCcccc-cchhccc
Q 005307 399 FKIYKLTFNEDTLPGWVMALLWLVYLLWL---WISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLL-NSEAKQK 474 (703)
Q Consensus 399 ~~~~~~~~~~~~~~f~i~~~~~~~~~i~~---~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 474 (703)
| |+.|++.++..++.++.. ...+++..+....+..+.... .......-.+. .......
T Consensus 179 ~----------~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 240 (500)
T PRK09584 179 W----------SVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKL--------LLTIVGVVALIAIATWLLH 240 (500)
T ss_pred H----------HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhH--------HHHHHHHHHHHHHHHHHHh
Confidence 8 999998876554443322 222333211110000000000 00000000000 0000000
Q ss_pred CCccccccCCCCCCCCcccccccCC-CcccHHHH---HHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhh----hh---
Q 005307 475 DENDDQELDNDDHDEDDEDSKITHR-PVTSIMSA---YRLLTPSVKVQLFVYFMLKYAMEILLAESSVITE----HY--- 543 (703)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--- 543 (703)
..+.. .......... ........ .+..+++.+..+. .++....+.......+.++. +.
T Consensus 241 ~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~f~~~~~q~~~~l~~~~~~~~~~ 309 (500)
T PRK09584 241 NQEIA----------RMALGVVALGIVVIFGKEAFAMKGAARRKMIVAFI-LMLEAIIFFVLYSQMPTSLNFFAIRNVEH 309 (500)
T ss_pred cchHH----------HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-HHHHHHHHHHHHHHhccHHHHHHHHhccc
Confidence 00000 0000000000 00000000 0000222222222 12222222233333333322 11
Q ss_pred --ccccchhHHHHHHhhhhhhhhHHHHHH---hhhhhhhhhHHHHHHHHHHHHHHHhhccccc------cccchhHHHHH
Q 005307 544 --FIWSTSRVAIFLACLGLTVLPVNIIVG---NYISNIFEERQVLLASEIIVCIGILLSFHIL------VPYSVPQYVGS 612 (703)
Q Consensus 544 --~g~s~~~~g~~~~~~~~~~~~~~~~~~---~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~ 612 (703)
.|+. ...+.+.++.++..++...+.. +++.+|.+....+.+|+++++++++++.... ...+.++.+..
T Consensus 310 ~~~g~~-i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~ 388 (500)
T PRK09584 310 SILGIA-VEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIAS 388 (500)
T ss_pred cccceE-ECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHH
Confidence 1111 1244555555555555544432 1555666666778888888888866532221 01234567778
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccc
Q 005307 613 ALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADG 663 (703)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~ 663 (703)
.++.++|.....|...+++.+..|++ .||+++|.. .....+|..++..
T Consensus 389 ~~l~~~ge~~~~p~g~s~~~~~aP~~-~rg~~~g~~--~l~~a~g~~~~g~ 436 (500)
T PRK09584 389 YGLQSIGELMISGLGLAMVAQLVPQR-LMGFIMGSW--FLTTAGAALIAGY 436 (500)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhCcHH-HHHHHHHHH--HHHHHHHHHHHHH
Confidence 88889999999999999999999999 999999976 2233344444433
No 104
>COG5408 SPX domain-containing protein [Signal transduction mechanisms]
Probab=99.86 E-value=1.3e-21 Score=183.04 Aligned_cols=52 Identities=31% Similarity=0.409 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCchHHHHhhh
Q 005307 97 SELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFDKRFGYRFTDYYVKTRA 148 (703)
Q Consensus 97 ~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK~~~~~~~~~~~~~~~ 148 (703)
..+++.+.++|.+|..|+.|++||+|||+||+|||||..+.+++..|+....
T Consensus 241 ~~lkk~ii~~y~~l~~lksf~eLN~tGf~Ki~KK~DK~l~~~~~~~~~s~~~ 292 (296)
T COG5408 241 SLLKKRIIELYIQLHQLKSFIELNYTGFSKITKKYDKTLHQNLRHEYMSRSV 292 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh
Confidence 4577899999999999999999999999999999999999999999998654
No 105
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=99.86 E-value=4.4e-21 Score=189.83 Aligned_cols=388 Identities=13% Similarity=0.096 Sum_probs=239.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhccchhHHHHhc-C-------ccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHH
Q 005307 245 YHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSL-G-------AAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLV 316 (703)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-------~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l 316 (703)
++.+.+.+...+.|.+.++...+..+.|.+...+ + .++...+.+.++..+|.++|++++|+++|++|||+++
T Consensus 38 ~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vY 117 (538)
T KOG0252|consen 38 KHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVY 117 (538)
T ss_pred HHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh
Confidence 3445666667777888888888888888777664 2 4566788999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHhhccc----chhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHH
Q 005307 317 FSSIVLL-VGNTLYAMAYDL----NSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGP 389 (703)
Q Consensus 317 ~~~~~~~-~~~~~~~~a~~~----~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp 389 (703)
...+++. ++++++++.... .-.+++...|++.|+|.|. |...+..+|....+.||...+.+-+..+.|.+.|.
T Consensus 118 G~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ 197 (538)
T KOG0252|consen 118 GKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGG 197 (538)
T ss_pred hHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhcc
Confidence 9987654 888887776322 2357899999999999999 99999999999999999999988888888888877
Q ss_pred Hhhhhh------ccccc-ccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccc-cccccccccccccCCCC
Q 005307 390 ALACLF------QTNFK-IYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVP-QEANAGLLINCTVDNGS 461 (703)
Q Consensus 390 ~i~~~l------~~g~~-~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 461 (703)
+++..+ ..+-+ -.+....-||..|.+.++.+++.+ ...+.+||+++...-..++ +.+....++...+
T Consensus 198 ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~l-y~Rl~M~Et~~Y~al~~~~~~~a~~d~~k~~~~---- 272 (538)
T KOG0252|consen 198 IVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVL-YFRLKMPETARYTALVSKKLKQAAGDMKKVLSV---- 272 (538)
T ss_pred HHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH-HhhhcCCcchhHHHHhhcCHhhhhhcccccccc----
Confidence 776665 11110 000112356888877776665554 4455689988754211100 0000000000000
Q ss_pred CCcccccchhcccCCccccccCCCCCCCCcccccccCCCccc---HHHHHHhh-CcchHHHHHHHHHHHHHHHHHHhhhh
Q 005307 462 TRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTS---IMSAYRLL-TPSVKVQLFVYFMLKYAMEILLAESS 537 (703)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (703)
+.++ +... +.....+... +...+..+ -+.++..+...|+.-.+++....+..
T Consensus 273 ---------------~~~~--------~~~~-~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s 328 (538)
T KOG0252|consen 273 ---------------DIEA--------ESTA-ESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQS 328 (538)
T ss_pred ---------------ccch--------hhcc-ccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHH
Confidence 0000 0000 0011111112 22222211 23444455555666666665555444
Q ss_pred HHhhhhccccchhHHH--------HHHhhhhhhhh-HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccc-cccccchh
Q 005307 538 VITEHYFIWSTSRVAI--------FLACLGLTVLP-VNIIVGNYISNIFEERQVLLASEIIVCIGILLSFH-ILVPYSVP 607 (703)
Q Consensus 538 ~~~~~~~g~s~~~~g~--------~~~~~~~~~~~-~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~-~~~~~~~~ 607 (703)
..+.. .|+.+....+ ...+..+++.+ +-++ +..++|++||+...+.|++++.+..+++.. +....+..
T Consensus 329 ~I~~~-ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~-tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~ 406 (538)
T KOG0252|consen 329 VIFSA-IGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWF-TVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTI 406 (538)
T ss_pred HHHHh-hccCCCcchHHHHHHHHHHHHHHHHHccCCceeE-EEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccC
Confidence 44443 4665544332 22233333333 3333 337889999999999999998887664433 32111223
Q ss_pred HHHHHHHHHH-hhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 608 QYVGSALITF-VAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 608 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
.+++...+.. ++...-+.....+.++.+|.+ .||+..|+. .+.+-+|+++|.....
T Consensus 407 Gf~v~y~l~~ff~NFGPn~ttfivpaE~FPar-vR~t~hGIs--AA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 407 GFVVLYSLTFFFGNFGPNATTFIVPAEIFPAR-VRSTCHGIS--AASGKAGAIVGAFGFL 463 (538)
T ss_pred ceeehHHHHHHHHhcCCCceeEEeehhhchHH-HhhhhhhHH--HHhccchHHHHHHHhh
Confidence 3333333322 222233344556778999999 999999987 5588889888887443
No 106
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.85 E-value=3e-19 Score=193.05 Aligned_cols=357 Identities=10% Similarity=0.005 Sum_probs=227.0
Q ss_pred HHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhcc----ccCc-hhHHHHHHHHH-HHHH
Q 005307 255 VNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSN----RSYL-KPLVFSSIVLL-VGNT 327 (703)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~D----r~Gr-r~~l~~~~~~~-~~~~ 327 (703)
++.+...+......+.++.|..+ +|+++..+|.+.++..+..++..|++|.++| |+|| |+.++++.+.. ++.+
T Consensus 13 ~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ 92 (473)
T PRK10429 13 FGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLF 92 (473)
T ss_pred cchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHH
Confidence 34444455555555666666555 6999999999999999999999999999999 5697 66777776544 5555
Q ss_pred HHHhhccc-c--hhHHHHHHHHHHhhcCcc--hhhhHHhhccC-ChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccc
Q 005307 328 LYAMAYDL-N--SIAVLLIGRLFCGLGSAR--AVNRRYISDCV-PLKLRMRASAGFVSASALGMACGPALACLF--QTNF 399 (703)
Q Consensus 328 ~~~~a~~~-~--~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~-~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~ 399 (703)
++...+.. + .+..+++..++.+++... ....++++|++ ++++|.+..++-....++|..+++.+...+ ..|.
T Consensus 93 llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~ 172 (473)
T PRK10429 93 LLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGG 172 (473)
T ss_pred HHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55443111 1 244556666677777665 67778889988 699999999987777777766665554433 2221
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccc
Q 005307 400 KIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDD 479 (703)
Q Consensus 400 ~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (703)
.....+|+...++.+++.++..++.++..||.+.+....
T Consensus 173 ---~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~-------------------------------------- 211 (473)
T PRK10429 173 ---GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQV-------------------------------------- 211 (473)
T ss_pred ---CchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccc--------------------------------------
Confidence 011123466666666666665555555556643211100
Q ss_pred cccCCCCCCCCcccccccCCCcccHHHHHH-h-hCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHh
Q 005307 480 QELDNDDHDEDDEDSKITHRPVTSIMSAYR-L-LTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLAC 557 (703)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 557 (703)
.+.+.+.++++..+ . .+|+++.+++..++..........+.+.|.....+ +....+.+.++
T Consensus 212 ----------------~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~-~~~~~~~~~~~ 274 (473)
T PRK10429 212 ----------------SAEGSHLTLKDIVALIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIG-DADLFPYYLSY 274 (473)
T ss_pred ----------------cccccCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhheeeEEEEECC-CHHHHHHHHHH
Confidence 00001112333332 1 27778777777777777666666655555554433 45556666676
Q ss_pred hhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccc--cccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 005307 558 LGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFH--ILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVM 635 (703)
Q Consensus 558 ~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (703)
.+++.+++.++++ ++.||+|+|+.+.++..+..++.+..+. ...+.+.+.+++..++.+++.+...+...+++++..
T Consensus 275 ~~i~~ii~~~~~~-~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~i 353 (473)
T PRK10429 275 AGAANLVTLILFP-RLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTV 353 (473)
T ss_pred HHHHHHHHHHHHH-HHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6677778877777 9999999999988887765555443221 111234455566667778888888888889999987
Q ss_pred cCCC------cccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 636 SSRL------SRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 636 ~~~~------~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
+... ..|...|.. .+...+|..+++.+.+ +.+..|
T Consensus 354 d~~e~~tG~R~~G~~~s~~--~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 354 DYGEYKLGIRCESIAYSVQ--TMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred hhhhHhcCccchhHHHHHH--HHHHHHHHHHHHHHHHHHHHHcC
Confidence 6321 234455665 5577788888887666 444333
No 107
>PRK09669 putative symporter YagG; Provisional
Probab=99.85 E-value=4.6e-19 Score=190.53 Aligned_cols=337 Identities=13% Similarity=0.045 Sum_probs=212.4
Q ss_pred hhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccc----cCc-hhHHHHHHHH-HHHHHHHHhhcc---cchhHHH
Q 005307 271 ADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNR----SYL-KPLVFSSIVL-LVGNTLYAMAYD---LNSIAVL 341 (703)
Q Consensus 271 l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr----~Gr-r~~l~~~~~~-~~~~~~~~~a~~---~~~~~~l 341 (703)
.+.+.+.+|+++.++|++.++..+..++..|+.|+++|| +|| |+.++.+.+. .++.++....+. ...++.+
T Consensus 33 ~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~ 112 (444)
T PRK09669 33 AYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA 112 (444)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH
Confidence 344556689999999999999999999999999999999 776 5666666543 355544444421 1235566
Q ss_pred HHHHHHHhhcCcc--hhhhHHhhccC-ChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHH
Q 005307 342 LIGRLFCGLGSAR--AVNRRYISDCV-PLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVM 416 (703)
Q Consensus 342 ~i~r~l~Gi~~g~--~~~~~~i~~~~-~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~ 416 (703)
++..++.+++... ....++.+|++ ++++|++..++...+..+|..+++.++..+ ..+. +....+|+..+.+.
T Consensus 113 ~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~---~~~~~g~~~~~~i~ 189 (444)
T PRK09669 113 CVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGK---GDEQKGYFYAMMVM 189 (444)
T ss_pred HHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CchhhhHHHHHHHH
Confidence 6666666666544 56678899987 578899999998888888888887766544 2221 11123457777777
Q ss_pred HHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccc
Q 005307 417 ALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKI 496 (703)
Q Consensus 417 ~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (703)
++++++..++.++..+|.+.+..+ +
T Consensus 190 ~ii~~v~~~~~~~~~~e~~~~~~~-------------------------------------------------------~ 214 (444)
T PRK09669 190 GLLGVVLFFCCFFMTKERYTPEVD-------------------------------------------------------N 214 (444)
T ss_pred HHHHHHHHHHHhCCeEEecCCCCc-------------------------------------------------------C
Confidence 777766665555545543211000 0
Q ss_pred cCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhh
Q 005307 497 THRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNI 576 (703)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r 576 (703)
+......++.+++ +++++.+++..++...+........+.|.....+ ++...+.+.....+..+++..+.+ ++.||
T Consensus 215 ~~~~~~~~~~~~~--n~~~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~-~l~~r 290 (444)
T PRK09669 215 SSSVWKDLKLLLG--NSQWRIMFIFNVVLLTAVVTRGGATLYYVNYVLL-RPDLATLFLVTGMIAGLFGALLSE-RLLGK 290 (444)
T ss_pred CCCHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHhhhhheeeeeecC-CHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 0001122333333 7777777776666655555444434444443333 223334444444455556656666 99999
Q ss_pred hhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCC------cccccchhhhH
Q 005307 577 FEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRL------SRGTYNGGLLS 650 (703)
Q Consensus 577 ~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~~~~ 650 (703)
+|+|+.+.++.++.+++.+.++... +.+.+.+++..++.+++.+...+...+++++..+.+. ..|...|..
T Consensus 291 ~gk~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~-- 367 (444)
T PRK09669 291 FDRVRAFKWTIVAFVILSALIFFIP-PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTN-- 367 (444)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHH--
Confidence 9999998887765554333222221 2445556667777888998888999999999886321 234344544
Q ss_pred Hhhhhhhhhhccceee-eecccc
Q 005307 651 TEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 651 ~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
+....+|..+||.+++ +.+..|
T Consensus 368 ~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 368 LFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 4466788888888776 444444
No 108
>PTZ00207 hypothetical protein; Provisional
Probab=99.85 E-value=3.7e-19 Score=190.80 Aligned_cols=395 Identities=12% Similarity=0.113 Sum_probs=235.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH
Q 005307 243 QRYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL 322 (703)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~ 322 (703)
+..+|..+...+....+.+..+ ......|.+.+++|.+..+++++.++.. ...++.++.|+++||+|||++++++.+.
T Consensus 23 e~~Rw~~lva~~~~~~~~g~~y-~fsv~s~~L~~~lgls~~~l~~i~svg~-~~g~~~lp~G~L~Dr~G~R~vllig~ll 100 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSFMY-AFNLISGAMQARYNLTQRDLSTITTVGI-AVGYFLLPYSFIYDYLGPRPIFVLSMTV 100 (591)
T ss_pred ccchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 3455655554444444444333 2335567788999999999999988743 4456777899999999999999999775
Q ss_pred H-HHHHHHHhhcc---cchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHH-HHHhhhhh
Q 005307 323 L-VGNTLYAMAYD---LNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMAC-GPALACLF 395 (703)
Q Consensus 323 ~-~~~~~~~~a~~---~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~l-gp~i~~~l 395 (703)
. ++.++++++.. .++++.+++.|++.|+|.+. +.+...+.+++| ++||++.|+...+.++|.++ +++..+++
T Consensus 101 ~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~ 179 (591)
T PTZ00207 101 FCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFF 179 (591)
T ss_pred HHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 89888888621 15899999999999999876 677788889986 78999999999999999976 55555555
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccc--c---ccccccccccccccccCCCCC--------
Q 005307 396 QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKE--N---LVPQEANAGLLINCTVDNGST-------- 462 (703)
Q Consensus 396 ~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~-------- 462 (703)
..+| +..|++.++++++..++.+.++++++.+... + +++++..+...+..-.++..+
T Consensus 180 ~~~~----------~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~ 249 (591)
T PTZ00207 180 SDNT----------SAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGF 249 (591)
T ss_pred HHhH----------HHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHH
Confidence 5456 7788888888888877777777776543211 1 011111000000000000000
Q ss_pred -----------------------C-----------------c-cccc---chhcc-c-CCcccc--ccCC-CCCCCCccc
Q 005307 463 -----------------------R-----------------P-LLLN---SEAKQ-K-DENDDQ--ELDN-DDHDEDDED 493 (703)
Q Consensus 463 -----------------------~-----------------~-~~~~---~~~~~-~-~~~~~~--~~~~-~~~~~~~~~ 493 (703)
. | .... .+... + +.+.++ ..+. .+..+.+..
T Consensus 250 ~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (591)
T PTZ00207 250 VILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDK 329 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccc
Confidence 0 0 0000 00000 0 000000 0000 000000000
Q ss_pred ---c--c-ccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchh--HHHHHHhhhhhhhhH
Q 005307 494 ---S--K-ITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSR--VAIFLACLGLTVLPV 565 (703)
Q Consensus 494 ---~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~--~g~~~~~~~~~~~~~ 565 (703)
. + ..++...++.+... +..+|.+++.+++...+...+........+..-|.+... ...+.++.++.+.+|
T Consensus 330 ~~~~~~~~~~P~~~~t~~q~l~--~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~G 407 (591)
T PTZ00207 330 VVETDVDYIAPQFQETFIEGLK--TARLWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVG 407 (591)
T ss_pred cccccccCCCCCCcchHHHHHh--chhHHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhh
Confidence 0 0 00111123433333 788999998888887777666666666666543653322 222667778888888
Q ss_pred HHHHHhhhhhh---------hhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhcc
Q 005307 566 NIIVGNYISNI---------FEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMS 636 (703)
Q Consensus 566 ~~~~~~~l~~r---------~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (703)
.+..| .+... +.|--.+.+..+ +.++.++++.. .+...+.++.++.|+++|+..++....+++++.
T Consensus 408 Rl~~g-~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~---~p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg 482 (591)
T PTZ00207 408 RLCMS-YFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLT---LPKAALPLPYFIAAFANGFMAATIALVTRTIFA 482 (591)
T ss_pred HHHHH-HHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHH---CCccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc
Confidence 88766 66522 222222333334 44443433332 122467788888899999999999999999999
Q ss_pred CCCcccccchhhhHHhhhhhhhhhcccee
Q 005307 637 SRLSRGTYNGGLLSTEAGTLARVIADGTI 665 (703)
Q Consensus 637 ~~~~~g~~~g~~~~~~~~~~g~~~gp~~~ 665 (703)
+ .-|+-... ..++..+|+++.
T Consensus 483 -k-~~g~~yN~------~~~a~pigs~~~ 503 (591)
T PTZ00207 483 -K-DPAKHYNF------CFLGSVLSAIFL 503 (591)
T ss_pred -c-chHHHhhH------HhHHHHHHHHHH
Confidence 5 45553333 234555555544
No 109
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.85 E-value=4.3e-19 Score=180.36 Aligned_cols=355 Identities=14% Similarity=0.131 Sum_probs=233.0
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCch-hHHHH-HHHH-H-
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLK-PLVFS-SIVL-L- 323 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr-~~l~~-~~~~-~- 323 (703)
..+......++..+..++..|..|.+.++ .|+|++++|.+.++..+..++.+|+.|.++||.|.| ..+.. +.+. .
T Consensus 8 ~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~ 87 (412)
T PF01306_consen 8 NYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLF 87 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHH
Confidence 44555666777777899999999999986 899999999999999999999999999999999954 44332 3332 2
Q ss_pred HHHHHHHhhccc-chhH-HHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-ccc
Q 005307 324 VGNTLYAMAYDL-NSIA-VLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTN 398 (703)
Q Consensus 324 ~~~~~~~~a~~~-~~~~-~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g 398 (703)
...++..+.+.. .|.+ ..+++-+..|++... ++..+++.++. ++.+.-.|-..+..++|.+++..++|.+ ..+
T Consensus 88 ~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~ 165 (412)
T PF01306_consen 88 GPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNIN 165 (412)
T ss_dssp HHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeC
Confidence 333333333110 2322 233333334444222 67777766543 3445566778888899999999999999 665
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcc
Q 005307 399 FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDEND 478 (703)
Q Consensus 399 ~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (703)
. ...||+..+.+++..++.++..|+.++.....
T Consensus 166 p----------~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~------------------------------------- 198 (412)
T PF01306_consen 166 P----------NIIFWIASAAAIILLLLLLLLKPDVPPQAEVA------------------------------------- 198 (412)
T ss_dssp H----------HHHHHHHHHHHHHHHHHHHSS---SSSSS-SS-------------------------------------
T ss_pred c----------cHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh-------------------------------------
Confidence 5 78888877666655555444333333221110
Q ss_pred ccccCCCCCCCCcccccccCCCcccHHHHHHhh-CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhc---cccchhHHHH
Q 005307 479 DQELDNDDHDEDDEDSKITHRPVTSIMSAYRLL-TPSVKVQLFVYFMLKYAMEILLAESSVITEHYF---IWSTSRVAIF 554 (703)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~g~~ 554 (703)
+. ...+++..+.+++.++. .|++|.+.+........+..+...++.|+...+ +.+....|++
T Consensus 199 ------------~~--~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l 264 (412)
T PF01306_consen 199 ------------DA--LGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYL 264 (412)
T ss_dssp ------------TT--SSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred ------------cc--cccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHH
Confidence 00 00011222455555554 888988888777777777777777787776543 3344557888
Q ss_pred HHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhh
Q 005307 555 LACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRV 634 (703)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (703)
.++.-+..++...+.. ++.+|+|.|+.++++..++++-....... ++.+...+.-.+.++-.+.......-++++.
T Consensus 265 ~s~~v~~E~~~m~~~p-~li~rig~k~~Lllag~i~~iRi~~~~~~---~~~~~i~~~klLH~~e~~l~lva~fkYI~~~ 340 (412)
T PF01306_consen 265 WSVQVFLEALMMFFSP-WLINRIGAKNLLLLAGVIMAIRIIGSGFA---TNPWVISLIKLLHALEFPLLLVAAFKYITAH 340 (412)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHHHT-----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHhcChHhHHHHHHHHHHHHHHHHhhh---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887778877777766 99999999999999998888886554333 5667788888999999999999999999999
Q ss_pred ccCCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 635 MSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 635 ~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
.|++ ..++...+.. +...++|.++.+.+.| +++.+|
T Consensus 341 fd~r-lsAt~y~v~~-~~~~~~~~~i~s~~~G~lyd~~G 377 (412)
T PF01306_consen 341 FDKR-LSATLYLVGF-QFAKQIGIIILSPLAGYLYDRIG 377 (412)
T ss_dssp S-GG-GHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHh-HHHHHHHHHH-HHHHHHHHHHHhhhHHhhHhhcC
Confidence 9998 5555555432 3466677777777555 556555
No 110
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.84 E-value=5.7e-21 Score=176.14 Aligned_cols=357 Identities=12% Similarity=0.046 Sum_probs=238.2
Q ss_pred HHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccc-cCchh-HHHHHHHHHHHHHHH
Q 005307 252 LNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNR-SYLKP-LVFSSIVLLVGNTLY 329 (703)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~Grr~-~l~~~~~~~~~~~~~ 329 (703)
.+++..|-+.+.+.........+-.+.+++.++..++.+.|.....+.+.++|++.|| +|-|. .++.+++..+|.+++
T Consensus 48 ~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliF 127 (459)
T KOG4686|consen 48 FMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIF 127 (459)
T ss_pred HHHHhcccceeecCCchhhhhhhhcccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444455556678888899999999999999999999999998 88655 455566666888887
Q ss_pred HhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccc
Q 005307 330 AMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLT 405 (703)
Q Consensus 330 ~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~ 405 (703)
+.--..+.+|+++++|++.|+|+-. .+-..|+.-|+..++.+.++|+.....-+|..+--.+.+++ ..+-..++-.
T Consensus 128 a~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~g 207 (459)
T KOG4686|consen 128 AAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVG 207 (459)
T ss_pred HhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccch
Confidence 7543338999999999999999876 66778899999999999999999998888876655544444 1111000000
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH-hccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCC
Q 005307 406 FNEDTLPGWVMALLWLVYLLWLWI-SFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDN 484 (703)
Q Consensus 406 ~~~~~~~f~i~~~~~~~~~i~~~~-~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (703)
....-....+....+...++.... -+-+......-++ + ++ ..
T Consensus 208 hT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~--e-------------~g-----------------~~----- 250 (459)
T KOG4686|consen 208 HTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHL--E-------------EG-----------------FL----- 250 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh--h-------------cC-----------------cc-----
Confidence 000000001111111111111110 0111111000000 0 00 00
Q ss_pred CCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhh
Q 005307 485 DDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLP 564 (703)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~ 564 (703)
. +..+....+++ .|++|.+.++++++..+..-+.+.-|.++++++|+|+..++.+.+.....+++
T Consensus 251 -----G---e~pkLtdv~~f-------~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav 315 (459)
T KOG4686|consen 251 -----G---EEPKLTDVNTF-------YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAV 315 (459)
T ss_pred -----c---CCccccccccc-------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhh
Confidence 0 00001111222 78999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHH-HHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccc
Q 005307 565 VNIIVGNYISNIFEERQVLLASEIIVC-IGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGT 643 (703)
Q Consensus 565 ~~~~~~~~l~~r~g~r~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 643 (703)
.+.+.| .++||.|++...+.+..+.. ++-..+++ +.+...+++.+.|+.++......++.++.++|++ +.|+
T Consensus 316 ~spvfg-~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F-----t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~-qLGT 388 (459)
T KOG4686|consen 316 LSPVFG-AISDKYGFNLWWVASACILTLLGHSGLFF-----TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEE-QLGT 388 (459)
T ss_pred hhhhHH-HhHhhhcceehhHHHHHHHHHHHhhhHHh-----hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHH-Hhcc
Confidence 888888 99999999877665544333 33222222 2334456778889988888888899999999999 9999
Q ss_pred cchhhhHHhhhhhhhhhccceee-eec
Q 005307 644 YNGGLLSTEAGTLARVIADGTIT-LSG 669 (703)
Q Consensus 644 ~~g~~~~~~~~~~g~~~gp~~~~-~~~ 669 (703)
+.|.. ....++|-++.|++.+ +.+
T Consensus 389 aygf~--qsIqNLgla~i~Iiag~i~d 413 (459)
T KOG4686|consen 389 AYGFI--QSIQNLGLAFIPIIAGFIAD 413 (459)
T ss_pred hHHHH--HHHHhhhhhHHhhhhheeec
Confidence 99998 4489999999999776 444
No 111
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.83 E-value=4.5e-18 Score=180.26 Aligned_cols=335 Identities=13% Similarity=0.119 Sum_probs=241.3
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHH-HHHH-HHHHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhh
Q 005307 283 TLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVF-SSIV-LLVGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNR 358 (703)
Q Consensus 283 ~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~-~~~~-~~~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~ 358 (703)
+..++..++..+..++..|+.|.++|+.|+|+-++ +..+ +.++++++.+. ..++++...+.-++.-++.+. ....
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v-~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV-SPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578889999999999999999999999665444 4433 44666666664 114455555555666566554 7899
Q ss_pred HHhhccCChhhh--------------------------hhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccch
Q 005307 359 RYISDCVPLKLR--------------------------MRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDT 410 (703)
Q Consensus 359 ~~i~~~~~~~~R--------------------------~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~ 410 (703)
+++.|+.+++++ ++..+.-.....+|.++.-++.-.+ ..+.. .....+.|
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~--~~~~~~~r 226 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST--ASNTWAIR 226 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--cccchhhh
Confidence 999999998888 8888888888888887776665555 22211 12233458
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCC
Q 005307 411 LPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDED 490 (703)
Q Consensus 411 ~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (703)
..+.+.++..++..+..++++|+.|++..... . .
T Consensus 227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~---------------------~-------------------------~ 260 (477)
T PF11700_consen 227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPS---------------------G-------------------------S 260 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCc---------------------c-------------------------h
Confidence 99999999988888888888998876322100 0 0
Q ss_pred cccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHH
Q 005307 491 DEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVG 570 (703)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~ 570 (703)
..-...-++....++++++ .|.+...++..++..-+...+.....+|..+.+|++..+...+..+..+.++++..+.+
T Consensus 261 ~~~~~g~~~l~~t~k~~~~--~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g 338 (477)
T PF11700_consen 261 SYLRFGFKRLWRTFKEIRK--LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFG 338 (477)
T ss_pred hHHHHHHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000011123344443 78888888888999989999999999999999999999999888899999999999988
Q ss_pred hhhhhhhhhH--HHHHHHHHHHHHHHh-hcc---c-cccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccc
Q 005307 571 NYISNIFEER--QVLLASEIIVCIGIL-LSF---H-ILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGT 643 (703)
Q Consensus 571 ~~l~~r~g~r--~~~~~~~~~~~i~~~-~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 643 (703)
++.||+|.| +++++++++..+..+ .++ . .....+.+.+.+..++.|++.+..++...++++++.|+. +.+.
T Consensus 339 -~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g-~e~e 416 (477)
T PF11700_consen 339 -WLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPG-REAE 416 (477)
T ss_pred -HHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCc-hhhH
Confidence 999999999 777766655533222 222 0 001244566777777889999999999999999999999 8899
Q ss_pred cchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 644 YNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 644 ~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
.+|++ ...+....++||++.+ +....+
T Consensus 417 fFgly--~i~gk~ss~lGPll~g~i~~~tg 444 (477)
T PF11700_consen 417 FFGLY--AITGKASSWLGPLLFGLITDATG 444 (477)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999 5689999999999777 444444
No 112
>PRK09848 glucuronide transporter; Provisional
Probab=99.83 E-value=1.8e-18 Score=186.31 Aligned_cols=350 Identities=12% Similarity=0.035 Sum_probs=214.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhcccc----Cchh-HHHHHH
Q 005307 247 FTSLLLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRS----YLKP-LVFSSI 320 (703)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~----Grr~-~l~~~~ 320 (703)
++..+.-.++.+...+..++..+.++.|..+ +|+++.++|++.++..+..++..|++|+++||. |||+ .++++.
T Consensus 7 ~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~ 86 (448)
T PRK09848 7 WRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGT 86 (448)
T ss_pred HHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHH
Confidence 3333333445555566666665655555555 799999999999999999999999999999996 6655 445553
Q ss_pred H-HHHHHHHHHhhc--ccc--hhHHHHHHHHHHhhcCcc--hhhhHHhhccC-ChhhhhhHHHHHHHH-----HHHHHHH
Q 005307 321 V-LLVGNTLYAMAY--DLN--SIAVLLIGRLFCGLGSAR--AVNRRYISDCV-PLKLRMRASAGFVSA-----SALGMAC 387 (703)
Q Consensus 321 ~-~~~~~~~~~~a~--~~~--~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~-~~~~R~~~~~~~~~~-----~~~G~~l 387 (703)
+ ..+..++....+ ..+ ..+.+++..++.+++.+. +...++..++. ++++|.+..++-..+ ..+|..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~ 166 (448)
T PRK09848 87 APLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLI 166 (448)
T ss_pred HHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 333333322111 001 233345555667777666 55566666655 457888877665543 3355556
Q ss_pred HHHhhhhh-c-ccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcc
Q 005307 388 GPALACLF-Q-TNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPL 465 (703)
Q Consensus 388 gp~i~~~l-~-~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (703)
+|++++.. . ... .|.....+.++++++..++.+...||++....
T Consensus 167 ~p~i~~~~g~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~~-------------------------- 212 (448)
T PRK09848 167 GPSIKNSSPEEMVS--------VYHFWTIVLAIAGMVLYFICFKSTRENVVRIV-------------------------- 212 (448)
T ss_pred HHHHHHhCCCchhh--------hHHHHHHHHHHHHHHHHHHHHcCcEeccCCCc--------------------------
Confidence 66665543 1 110 01111122233333333333333344322100
Q ss_pred cccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhcc
Q 005307 466 LLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFI 545 (703)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 545 (703)
++......++.+++ +|+++...+..++...+........|.|+++.+|
T Consensus 213 ------------------------------~~~~~~~~~~~l~~--n~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 260 (448)
T PRK09848 213 ------------------------------AQPSLKISLQTLKR--NRPLFMLCIGALCVLISTFAVSASSLFYVRYVLN 260 (448)
T ss_pred ------------------------------cCCCHHHHHHHHhC--CchHHHHHHHHHHHHHHHHHHhhhheeeEeeecC
Confidence 00011112344444 8888888888888777777777777778888888
Q ss_pred ccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhH
Q 005307 546 WSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEG 625 (703)
Q Consensus 546 ~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (703)
.++...++......++.+++..+.+ ++.+|+|+|+.+.++.++.+++++++... ...+.+...+..++.++|.+...+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~r~g~~~~~~~g~~~~~i~~~~~~~~-~~~~~~~~~~~~~l~g~G~~~~~~ 338 (448)
T PRK09848 261 DTGLFTVLVLVQNLVGTVASAPLVP-GMVARIGKKNTFLIGALLGTCGYLLFFWV-SVWSLPVALVALAIASIGQGVTMT 338 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCcHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHHHHHHH
Confidence 7766555544444455666777777 99999999999999988877776544332 123455555667777888888888
Q ss_pred HHHHHHHhhccCCC------cccccchhhhHHhhhhhhhhhccceee
Q 005307 626 VNLSLLSRVMSSRL------SRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 626 ~~~~~~~~~~~~~~------~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
...++.++..+.+. ..|...|.. +....+|..+|+.+.+
T Consensus 339 ~~~al~~~~~~~~~~~~g~r~~G~~~~~~--~~~~klg~aig~~i~g 383 (448)
T PRK09848 339 VMWALEADTVEYGEYLTGVRIEGLTYSLF--SFTRKCGQAIGGSIPA 383 (448)
T ss_pred HHHHHHHHhhhhhHHhhCccchhHHHHHH--HHHHHHHHHHHHHHHH
Confidence 88899988887541 347666776 4477788888887665
No 113
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1.4e-17 Score=170.99 Aligned_cols=363 Identities=14% Similarity=0.110 Sum_probs=259.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccc----cCc-hhHHHHH
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNR----SYL-KPLVFSS 319 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr----~Gr-r~~l~~~ 319 (703)
+++.-+.-.+.-+............+..|..+ +|+++..+|.+..+.-+--++..|+.|.++|| +|| ||.++.+
T Consensus 10 s~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g 89 (467)
T COG2211 10 SLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWG 89 (467)
T ss_pred cHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHH
Confidence 33333444444444555555555555555555 79999999999999999999999999999997 785 6677777
Q ss_pred HH-HHHHHHHHHhhcc---cchhHHHHHHHHHHhhcCcc--hhhhHHhhccCC-hhhhhhHHHHHHHHHHHHHHHHHHhh
Q 005307 320 IV-LLVGNTLYAMAYD---LNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVP-LKLRMRASAGFVSASALGMACGPALA 392 (703)
Q Consensus 320 ~~-~~~~~~~~~~a~~---~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~-~~~R~~~~~~~~~~~~~G~~lgp~i~ 392 (703)
.+ ..+.+.++..+++ ..+....++...+.+++... ....++.+++++ ++||.+..++-+.+.++|.++...+.
T Consensus 90 ~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~ 169 (467)
T COG2211 90 AIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLF 169 (467)
T ss_pred hHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55 5577777777732 13456677778888888776 667788888775 89999999999999998876665555
Q ss_pred hhh--cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccch
Q 005307 393 CLF--QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSE 470 (703)
Q Consensus 393 ~~l--~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (703)
..+ ..|- +..-.+|+...++.++++++.++.+++..+|.+.+....
T Consensus 170 ~plv~~~g~---~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~----------------------------- 217 (467)
T COG2211 170 PPLVKLFGG---GDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPT----------------------------- 217 (467)
T ss_pred HHHHHHhCC---CcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccC-----------------------------
Confidence 444 1111 111335688888888888888888888777776532210
Q ss_pred hcccCCccccccCCCCCCCCcccccccCCCcccHH----HHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccc
Q 005307 471 AKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIM----SAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIW 546 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 546 (703)
+...+.+++ .+++ |++++..++..++...+.....+....|.+...|.
T Consensus 218 --------------------------~~~~~~~~~~~~~~~~~--Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~ 269 (467)
T COG2211 218 --------------------------KTGVKLKLKDSFLLIFK--NRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGD 269 (467)
T ss_pred --------------------------cccccccHHHHHHHHHc--cchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCC
Confidence 000112233 3334 88888888888888888888888888888888888
Q ss_pred cchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHH
Q 005307 547 STSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGV 626 (703)
Q Consensus 547 s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 626 (703)
+.......+...+...+++..+.. ++++|+|+|+++.++.++.+++.++.+..+ ..+.+..++..++.+++.+...+.
T Consensus 270 ~~l~~~~~~~~~~~~~l~~~~~~p-~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~-~~~~~l~~~~~~i~~~g~~~~~~l 347 (467)
T COG2211 270 PELFAYLLLLASGAGLLIGLILWP-RLVKKFGKKKLFLIGLLLLAVGYLLLYFTP-AGSVVLIVVALIIAGVGTGIANPL 347 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHH-HHHHHhchHHHHHHHHHHHHHHHHHHHhhc-CcchHHHHHHHHHHHHHhhccccc
Confidence 888777777776666666666666 999999999999999999998887766664 455677777778888999999999
Q ss_pred HHHHHHhhccCCC------cccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 627 NLSLLSRVMSSRL------SRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 627 ~~~~~~~~~~~~~------~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
.++++++.++-.. ..|...|.+ +++.-+|.+++..+.+ +.+..|
T Consensus 348 ~wam~~d~vDyge~~TG~R~eGi~~s~~--tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 348 PWAMVADTVDYGEWKTGVRREGIVYSGM--TFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred cHHHhcchhhHHHHHhCCCchhhHHHHH--HHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999998876432 345555655 5577778777776555 444444
No 114
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.82 E-value=1.6e-18 Score=185.96 Aligned_cols=364 Identities=14% Similarity=-0.002 Sum_probs=231.5
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHH-HhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccC-----chhHHHHHHHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYS-LSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSY-----LKPLVFSSIVL 322 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~G-----rr~~l~~~~~~ 322 (703)
.+.++....+..++. ++....++.+. +++|+++++++...++..++..+-.+ +|+++||++ ||+.++++.+.
T Consensus 27 ~~~~~~~~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l 104 (468)
T TIGR00788 27 VLAIGLQVLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL 104 (468)
T ss_pred HHHHHHHHHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence 334444456666666 55554555554 56899999999999999999998666 999999997 67777766433
Q ss_pred H--HHHHHHHhhcccch-hHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHH---HHHHHHHHHHHHHHHhhhh
Q 005307 323 L--VGNTLYAMAYDLNS-IAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASA---GFVSASALGMACGPALACL 394 (703)
Q Consensus 323 ~--~~~~~~~~a~~~~~-~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~---~~~~~~~~G~~lgp~i~~~ 394 (703)
. ++....+.. ++ .....+..++.+++.+. +++.+++.|..+ +++....+ +...+.++|.++|+.++|.
T Consensus 105 ~~~~~~~~l~~~---~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~ 180 (468)
T TIGR00788 105 GSAILYGLLPGK---VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGP 180 (468)
T ss_pred HHHHHHHhcccc---cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHH
Confidence 2 222222332 34 34444578889999887 899999999988 55544333 3334455899999999999
Q ss_pred h--cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhc
Q 005307 395 F--QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAK 472 (703)
Q Consensus 395 l--~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (703)
+ ..+| +..|++.+++.++.. +..+++||++.....+..+.+. ..
T Consensus 181 l~~~~~~----------~~~f~~~a~l~ll~~-~~~~~~~E~~~~~~~~~~~~~~---------------~~-------- 226 (468)
T TIGR00788 181 LLDKTLT----------RILFLITAALLLLQL-FVSNLSKERRAFVRPRIGTYLE---------------MN-------- 226 (468)
T ss_pred HHHhcCc----------chHHHHHHHHHHHHH-HHHHhcccccccccccccccch---------------hh--------
Confidence 8 5688 899999888877774 4455678864211100000000 00
Q ss_pred ccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhh-CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhH
Q 005307 473 QKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLL-TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRV 551 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 551 (703)
+ . .... .........++++++.. +|.++..++..++.+.........+-.+.....|+++...
T Consensus 227 ~--~-------------~~~~-~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~ 290 (468)
T TIGR00788 227 M--A-------------LLTL-GVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFS 290 (468)
T ss_pred h--h-------------hhhh-hHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchh
Confidence 0 0 0000 00000011122333322 5666655544444211111111111113335689999999
Q ss_pred HHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccc----cc--c-ccchhHHHHHHHHHHhhhhhhh
Q 005307 552 AIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFH----IL--V-PYSVPQYVGSALITFVAAEVLE 624 (703)
Q Consensus 552 g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~----~~--~-~~~~~~~~~~~~~~~~~~~~~~ 624 (703)
|+...+.+++.+++..+.+ ++.+|++.|+++.++.++.+++.+.... +. . ..+.+......++.+++.+...
T Consensus 291 G~~~~~~~v~~i~g~~~~~-~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~ 369 (468)
T TIGR00788 291 GMSKVVGNLGSLCGVGGYD-RFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKF 369 (468)
T ss_pred hhHHHHHHHHHHHHHHHHH-HHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHH
Confidence 9999999999988888888 7889999999999998888877543211 10 0 0122334444566677777777
Q ss_pred HHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 625 GVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 625 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
.....++++..|++ .+|+..|+..+ ..++|..+++.+++ +...+|
T Consensus 370 ~~~~~~~~~~~p~~-~egt~~al~~s--~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 370 MPFLVLLARLCPSG-CESSVFALLAS--ILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred ccHHHHHHHhCCCC-ceehHHHHHHH--HHHHHHHHHHHHHHHHHHHcC
Confidence 78899999999999 89999999844 77899999998777 555555
No 115
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.81 E-value=1.6e-17 Score=175.47 Aligned_cols=391 Identities=10% Similarity=0.022 Sum_probs=222.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHH-hcCccchhhhHHHHHHHHHHHHHhhhhhhhcccc-CchhHHHHHHHHH
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSL-SLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRS-YLKPLVFSSIVLL 323 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-Grr~~l~~~~~~~ 323 (703)
+++.++.+++..+...+.++.....+|.|.. ++|.++.+.+++.+.+.+...++++++|+++||+ |||++++++.+..
T Consensus 7 ~p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~ 86 (493)
T PRK15462 7 QPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLM 86 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHH
Confidence 4455667777777778888878788888865 4899999999999999999999999999999999 9999998887654
Q ss_pred -HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChh--hhhhHHHHHHHHHHHHHHHHHHhhhhh--c
Q 005307 324 -VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLK--LRMRASAGFVSASALGMACGPALACLF--Q 396 (703)
Q Consensus 324 -~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~--~R~~~~~~~~~~~~~G~~lgp~i~~~l--~ 396 (703)
++.+++++.. .+...++++..+.++|.|. +...++++|.+|++ +|..++++...+.++|..++|.+++++ .
T Consensus 87 ~lg~lll~~~~--~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~ 164 (493)
T PRK15462 87 AIGHVVLGASE--IHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEE 164 (493)
T ss_pred HHHHHHHHHhh--cchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7776666541 1223344444444455554 76788999999875 699999999999999999999999999 6
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCC------CCCcccccch
Q 005307 397 TNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNG------STRPLLLNSE 470 (703)
Q Consensus 397 ~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 470 (703)
+|| ++.|++.++..++.++. ++........... ..+++... ++....-.+ .-.+.+....
T Consensus 165 ~Gw----------~~~F~iaaigm~l~li~-~~~~~~~l~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (493)
T PRK15462 165 YSW----------AMGFGLAAVGMIAGLVI-FLCGNRHFTHTRG--VNKKVLRA-TNFLLPNWGWLLVLLVATPALITVL 230 (493)
T ss_pred hCh----------HHHHHHHHHHHHHHHHH-HHHhhhhhccCCC--CCCCCchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788 89998876544443333 2222211111000 00000000 000000000 0000000000
Q ss_pred hcccCCccccccCCCCCCCCcc-cccccCCCcccHHHHHHhhCcch---HHHHHHHHHHHHHHHHHHhhhhHHhhhhc--
Q 005307 471 AKQKDENDDQELDNDDHDEDDE-DSKITHRPVTSIMSAYRLLTPSV---KVQLFVYFMLKYAMEILLAESSVITEHYF-- 544 (703)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 544 (703)
.. .......-.......-. --.....+. +-.+ ++++ ..+++...+++..+....+.+..|..+..
T Consensus 231 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e-----r~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~ 301 (493)
T PRK15462 231 --FW-KEWSVYALIVATIIGLGVLAKIYRKAE-NQKQ-----RKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNR 301 (493)
T ss_pred --HH-HHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHH-----HhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccc
Confidence 00 00000000000000000 000000000 0000 1222 22333334444444444555566665532
Q ss_pred ---cccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhH-------HHHHHHHHHHHHHHhhccc----cc--cccchhH
Q 005307 545 ---IWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEER-------QVLLASEIIVCIGILLSFH----IL--VPYSVPQ 608 (703)
Q Consensus 545 ---g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r-------~~~~~~~~~~~i~~~~~~~----~~--~~~~~~~ 608 (703)
|+. -..+++.++..+..++.+.+++ ++-.|..+| .-..+|+++++++++++.. .. ...+.++
T Consensus 302 ~~~g~~-ip~~~~qslNp~~ii~l~P~~a-~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~w 379 (493)
T PRK15462 302 DMFGYT-VPTAMFQSINAFAVMLCGVFLA-WVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPL 379 (493)
T ss_pred hhccee-eCHHHHHhHhHHHHHHHHHHHH-HHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHH
Confidence 322 1245666777777666666666 554444221 1245677777777554321 11 1135566
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhcccee
Q 005307 609 YVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTI 665 (703)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~ 665 (703)
.++..++..+|.-+..|+..+++++..|++ .+|..+|..... ...+|..++..+.
T Consensus 380 l~~~~~~~t~gEl~~sPvgls~~~~laP~~-~~g~~mg~w~l~-~~~~~~~~~g~~~ 434 (493)
T PRK15462 380 MVLGLAVMGFAELFIDPVAMSQITRIEIPG-VTGVLTGIYMLL-SGAIANYLAGVIA 434 (493)
T ss_pred HHHHHHHHHHHHHHHChHHHHHHHHhChHH-HHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 777888889999999999999999999999 899888886221 2245555555433
No 116
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.81 E-value=1.3e-18 Score=185.98 Aligned_cols=334 Identities=16% Similarity=0.150 Sum_probs=242.6
Q ss_pred chhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhcc----ccCc-hhHHHHHHHH-HHHHHHHHhhcc-c----chh
Q 005307 270 TADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSN----RSYL-KPLVFSSIVL-LVGNTLYAMAYD-L----NSI 338 (703)
Q Consensus 270 ~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~D----r~Gr-r~~l~~~~~~-~~~~~~~~~a~~-~----~~~ 338 (703)
..+.+.+.+|+++..+|++..+..+..++..|+.|.++| |+|| ||.++++.+. .++.+++...++ . ...
T Consensus 24 ~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~ 103 (428)
T PF13347_consen 24 LLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL 103 (428)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence 345556668999999999999999999999999999999 7996 4566666554 466555554411 1 133
Q ss_pred HHHHHHHHHHhhcCcc--hhhhHHhhccCC-hhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHH
Q 005307 339 AVLLIGRLFCGLGSAR--AVNRRYISDCVP-LKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPG 413 (703)
Q Consensus 339 ~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~-~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f 413 (703)
..+++..++..++... ....++.+|+++ +++|.+..++-..+..+|.++...+.+.+ ..|. +...++|++..
T Consensus 104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~---~~~~~~~~~~~ 180 (428)
T PF13347_consen 104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGG---GDTSNGYRWMA 180 (428)
T ss_pred HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhcc---CccchHHHHHH
Confidence 4456777777888776 778899999987 67999999999988888887666666655 2221 00112568999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCccc
Q 005307 414 WVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDED 493 (703)
Q Consensus 414 ~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (703)
++.+++.++..++..+..+|.+....+
T Consensus 181 ~v~~iv~~v~~~i~~~~~ke~~~~~~~----------------------------------------------------- 207 (428)
T PF13347_consen 181 LVLAIVGLVFFLITFFFVKERSVEVTE----------------------------------------------------- 207 (428)
T ss_pred HHHHHHHHHHhhhhhheeeeccccccc-----------------------------------------------------
Confidence 999988888888888878882211110
Q ss_pred ccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhh
Q 005307 494 SKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYI 573 (703)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l 573 (703)
+.++......++.+++ +|+++.+++..++..++........+.|.+...|.+ ...+.+..+..++++++..+++ ++
T Consensus 208 ~~~~~~~~~~~~~~~~--nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~-~l 283 (428)
T PF13347_consen 208 QEKKISLRDSLRSLFR--NRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWG-RL 283 (428)
T ss_pred cccccccccchhhhcc--cchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHH-HH
Confidence 0011112234455555 888888888888888888888888888888887766 5566777777788888888877 99
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCC------cccccchh
Q 005307 574 SNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRL------SRGTYNGG 647 (703)
Q Consensus 574 ~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~g~ 647 (703)
+||+|+|+.+..+.++.+++.++..... ..+.+...+..++.+++.+.......++++|..+... ..|...|.
T Consensus 284 ~~r~gk~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~ 362 (428)
T PF13347_consen 284 SKRFGKKKVYIIGLLLAALGFLLLFFLG-PGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSV 362 (428)
T ss_pred HHHccceeehhhhHHHHHHHHHHHHHHH-hhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHh
Confidence 9999999999999988888876554442 1567778888888899999888899999999887431 35666666
Q ss_pred hhHHhhhhhhhhhccceee
Q 005307 648 LLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 648 ~~~~~~~~~g~~~gp~~~~ 666 (703)
. .+...++..+++.+.+
T Consensus 363 ~--~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 363 N--SFFIKIGQGLAGAIVG 379 (428)
T ss_pred h--hhhhHHHHHHHHHHHH
Confidence 5 4466777777777655
No 117
>PRK11462 putative transporter; Provisional
Probab=99.77 E-value=4e-16 Score=167.49 Aligned_cols=346 Identities=9% Similarity=-0.024 Sum_probs=205.5
Q ss_pred HHHHHHHHhhhhhccchhH-HHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccc----cCc-hhHHHHHHH-HHHHHH
Q 005307 255 VNTFLYMVNTYVIVPTADN-YSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNR----SYL-KPLVFSSIV-LLVGNT 327 (703)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~-~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr----~Gr-r~~l~~~~~-~~~~~~ 327 (703)
++.+...+...+....+.. |.+.+|+++..+|++..+.-+.-++..|+.|.++|| +|| ||.++++.+ ..++.+
T Consensus 16 ~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ 95 (460)
T PRK11462 16 MGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCV 95 (460)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHH
Confidence 3333333434444443444 445579999999999999999999999999999997 786 566666754 446655
Q ss_pred HHHhhccc---chhHHHHHHHHHHhhcCcc--hhhhHHhhccCC-hhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccc
Q 005307 328 LYAMAYDL---NSIAVLLIGRLFCGLGSAR--AVNRRYISDCVP-LKLRMRASAGFVSASALGMACGPALACLF--QTNF 399 (703)
Q Consensus 328 ~~~~a~~~---~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~-~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~ 399 (703)
++...+.. ..+..+++..++..++... ....++.+|+++ +++|++..++...+..+|..+++.+...+ ..|.
T Consensus 96 llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~ 175 (460)
T PRK11462 96 LAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGG 175 (460)
T ss_pred HHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55544211 1144566666677777666 667788889876 89999999999999999988888776554 2221
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccc
Q 005307 400 KIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDD 479 (703)
Q Consensus 400 ~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (703)
.....+|+....+.+++.+++.++.+...+|.++...
T Consensus 176 ---~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~~---------------------------------------- 212 (460)
T PRK11462 176 ---DNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPP---------------------------------------- 212 (460)
T ss_pred ---CchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCCc----------------------------------------
Confidence 1112244666666666655555444444444321100
Q ss_pred cccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhh
Q 005307 480 QELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLG 559 (703)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~ 559 (703)
++......++...+ +++++.++...++..............|.....|. +...+.+..+.+
T Consensus 213 ----------------~~~~~~~~l~~~~~--Nk~~~~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~ 273 (460)
T PRK11462 213 ----------------TTTSMREDLRDIWQ--NDQWRIVGLLTIFNILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYC 273 (460)
T ss_pred ----------------cCCCHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHH
Confidence 00001112233333 67776666555555555555444445555544443 334455566666
Q ss_pred hhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCC
Q 005307 560 LTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRL 639 (703)
Q Consensus 560 ~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (703)
++.+++..+.+ ++.||+++|+.+..+..+..+..++.+... ..+.+..++..++.+++.+...+..++++++..+...
T Consensus 274 i~~iig~~l~~-~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e 351 (460)
T PRK11462 274 VGNLIGSALAK-PLTDWKCKVTIFWWTNALLAVISLAMFFVP-MQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGE 351 (460)
T ss_pred HHHHHHHHHHH-HHHHHhChHHHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhH
Confidence 77777776766 999999999887655443333222222221 2222233444455566666666666777777766221
Q ss_pred ------cccccchhhhHHhhhhhhhhhccceee
Q 005307 640 ------SRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 640 ------~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
..|...+.. ++...+|..+|+.+.+
T Consensus 352 ~~tG~r~~g~~~a~~--~f~~Klg~alg~~i~g 382 (460)
T PRK11462 352 WCNGKRLTGISFAGT--LFVLKLGLAFGGALIG 382 (460)
T ss_pred HhcCCCchHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 223333332 3466677777777665
No 118
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.77 E-value=6.2e-16 Score=154.16 Aligned_cols=359 Identities=14% Similarity=0.079 Sum_probs=238.9
Q ss_pred HHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccC-----chhH-HHHHHH-HHHHHHHHHhhc--ccc--------
Q 005307 274 YSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSY-----LKPL-VFSSIV-LLVGNTLYAMAY--DLN-------- 336 (703)
Q Consensus 274 ~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~G-----rr~~-l~~~~~-~~~~~~~~~~a~--~~~-------- 336 (703)
+..|+++++...+.+.++..+.+. ..+.+|+.||+.+ ||.- ++.+.+ .+.+..+..++. ...
T Consensus 6 MIvEL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~ 84 (403)
T PF03209_consen 6 MIVELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGP 84 (403)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccc
Confidence 457899999999999998887766 5999999999988 7654 444544 335544444431 001
Q ss_pred h-hH--HHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccc
Q 005307 337 S-IA--VLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNED 409 (703)
Q Consensus 337 ~-~~--~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~ 409 (703)
. .+ ...++.++.|+|.+. +...++++|..|+++|+++.++......+|.+++.++.+.+ .+...
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~--------- 155 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE--------- 155 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH---------
Confidence 1 22 334455666777666 78889999999999999999999999999999999998877 44421
Q ss_pred hhHHHHHH--HHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCC
Q 005307 410 TLPGWVMA--LLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDH 487 (703)
Q Consensus 410 ~~~f~i~~--~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (703)
|..-.+.. ++.++..++..+ =.|++.......
T Consensus 156 rL~~v~~~~a~i~~~l~~ia~w-g~E~r~~~~~~~--------------------------------------------- 189 (403)
T PF03209_consen 156 RLIQVIQGVALIALLLNLIALW-GQEPRRSRRAAA--------------------------------------------- 189 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcccCCcccccC---------------------------------------------
Confidence 33222222 222222222222 123322111000
Q ss_pred CCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHH
Q 005307 488 DEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNI 567 (703)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 567 (703)
.+.++......++++.. +|+....++..++..+++..-...+-+|-.+.+|+++.+...+....+.+.+++..
T Consensus 190 -----~~~~~~~f~~a~~~~~~--~~~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~ 262 (403)
T PF03209_consen 190 -----AERPRPPFREAWRQVWA--SPQARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGML 262 (403)
T ss_pred -----CCCCCccHHHHHHHHHh--CCChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00000111122333333 88888888888888888888888889999999999999999999999999888888
Q ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchh
Q 005307 568 IVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGG 647 (703)
Q Consensus 568 ~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 647 (703)
..+-++.+|.++++...+|+....+++.++.......+.+.+....+++|++.+.......+.+.+..+++ +.|..+|.
T Consensus 263 ~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~-~aG~~mG~ 341 (403)
T PF03209_consen 263 LAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAG-RAGLFMGA 341 (403)
T ss_pred HHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCc-chhHHHHH
Confidence 87855566888888888888888888765544433456788889999999999999888889999999888 78888888
Q ss_pred hhHHhhhhhhhhhccceee-eecc---ccCCcccccchhHHHHHHHHHHHHHHHh
Q 005307 648 LLSTEAGTLARVIADGTIT-LSGY---LGESRLLNVTLLPSLFICISSIVATCIT 698 (703)
Q Consensus 648 ~~~~~~~~~g~~~gp~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (703)
. .....++..+|..+++ +.+. +........+..+|.+=+++.+++.++.
T Consensus 342 W--GaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 342 W--GAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 6 3355566666665554 3222 2211122234444544444444444443
No 119
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.76 E-value=9e-17 Score=162.74 Aligned_cols=271 Identities=12% Similarity=-0.006 Sum_probs=188.6
Q ss_pred chhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccc-c------ccc
Q 005307 336 NSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKI-Y------KLT 405 (703)
Q Consensus 336 ~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~-~------~~~ 405 (703)
.+++.++++-++.|.|.+. +.+..+++++.+++++++.+++.+.++++|.++||.+++.+ ..+-.. . +..
T Consensus 8 ~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~ 87 (310)
T TIGR01272 8 RYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAE 87 (310)
T ss_pred hHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHH
Confidence 7899999999999999998 99999999999999999999999999999999999999987 321000 0 000
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH-hccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCC
Q 005307 406 FNEDTLPGWVMALLWLVYLLWLWI-SFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDN 484 (703)
Q Consensus 406 ~~~~~~~f~i~~~~~~~~~i~~~~-~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (703)
...|+++|++.+.+.++..++..+ -+||.+++..+ +
T Consensus 88 ~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~------------------------------------~------- 124 (310)
T TIGR01272 88 AAKVHTPYLLLAGALAVLAIIFAFLPLPELQEADVA------------------------------------R------- 124 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCCCccccc------------------------------------c-------
Confidence 124699999776665544433322 23332111000 0
Q ss_pred CCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhh--ccccchhHHHHHHhhhhhh
Q 005307 485 DDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHY--FIWSTSRVAIFLACLGLTV 562 (703)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~ 562 (703)
... .+. ...+...+ +|.++...+..+++..+......+++.|+.+. +|+++.+.+...+....+.
T Consensus 125 -----~~~---~~~---~~~~~~~~--~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~ 191 (310)
T TIGR01272 125 -----VSS---GDT---TQKTSAFQ--FTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGA 191 (310)
T ss_pred -----ccc---ccc---cchhhHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHH
Confidence 000 000 00111222 56677776777777767788888999999753 6999999999999999999
Q ss_pred hhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCccc
Q 005307 563 LPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRG 642 (703)
Q Consensus 563 ~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 642 (703)
++++++.+ ++.||+++++.+.++..+.+++.++.... .... .....++.+++.+..+|...+...+..|++ .+
T Consensus 192 ~iGr~~~~-~l~~r~g~~~~l~~~~~l~~~~~~l~~~~---~~~~-~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~--~~ 264 (310)
T TIGR01272 192 MVGRFIGS-AVMPMISQGRYLAFNAFLAVLLSIGAALT---HGYV-AMWFVLALGLFNSIMFPTIFSLALNALGRH--TS 264 (310)
T ss_pred HHHHHHHH-HHHHHhCHHHHHHHHHHHHHHHHHHHHHc---CCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hh
Confidence 99988877 99999999998888777776665433332 1222 234555678888999999999999988876 44
Q ss_pred ccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 643 TYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 643 ~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
++.++. . .+.+|++++|.+.+ +.+..+
T Consensus 265 ~asai~--~-~~~~Gg~i~P~l~G~lad~~g 292 (310)
T TIGR01272 265 QGSGIL--C-LAIVGGAIVPLLQGSLADCLG 292 (310)
T ss_pred hhHHHH--H-HHHhcchHHHHHHHHHHHhcc
Confidence 445543 2 56689999998655 445444
No 120
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.76 E-value=8.5e-17 Score=159.47 Aligned_cols=335 Identities=13% Similarity=0.121 Sum_probs=239.1
Q ss_pred chhhhHHHHHHHHHHHHHhhhhhhhccccCchh-HHHHHHHH-HHHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhh
Q 005307 282 ATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKP-LVFSSIVL-LVGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVN 357 (703)
Q Consensus 282 ~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~-~l~~~~~~-~~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~ 357 (703)
.+..|...++..+..++.+|+.|.++|+.|+|+ .+-...+. .++.++..++++...++..++...+..++... ...
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy 136 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY 136 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence 356788889999999999999999999999555 44444443 36666677764333455666677777888665 788
Q ss_pred hHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhh--hh---ccccccc-----ccccccchhHHHHHHHHHHHHHHHH
Q 005307 358 RRYISDCVPLKLRMRASAGFVSASALGMACGPALAC--LF---QTNFKIY-----KLTFNEDTLPGWVMALLWLVYLLWL 427 (703)
Q Consensus 358 ~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~--~l---~~g~~~~-----~~~~~~~~~~f~i~~~~~~~~~i~~ 427 (703)
.+++.+.+++++-++..+.-.....+|.++--++.- .. ..++... +.....-|.++.+.++..++..+..
T Consensus 137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM 216 (438)
T ss_pred hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence 999999999988777766655555555554433321 11 1222211 1122234888888888888888777
Q ss_pred HHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHH
Q 005307 428 WISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSA 507 (703)
Q Consensus 428 ~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (703)
++..|+.+..... . ...-...-++...++++.
T Consensus 217 ~~~v~~~~~~~~~----------------------~--------------------------~~~l~~g~k~L~~t~k~i 248 (438)
T COG2270 217 ILNVHDAEKISSP----------------------P--------------------------PTALRNGFKELKSTFKEI 248 (438)
T ss_pred Hhccccccccccc----------------------c--------------------------hHHHHHHHHHHHHHHHHH
Confidence 7777776642100 0 000000001112234445
Q ss_pred HHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHH
Q 005307 508 YRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASE 587 (703)
Q Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~ 587 (703)
++ ++.+...++..+++.-+.....+....|....+|++..+..++.....+++++++++.+ ++.+|+|.|+++..++
T Consensus 249 ~~--~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g-~Ld~rfg~k~vl~~~l 325 (438)
T COG2270 249 RG--RKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAG-FLDERFGSKPVLMIGL 325 (438)
T ss_pred hc--ccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCceeehHHH
Confidence 44 77888888889998888888888888999989999999999999999999999999988 9999999999999888
Q ss_pred HHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee-
Q 005307 588 IIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT- 666 (703)
Q Consensus 588 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~- 666 (703)
++..+.++..+.. .....+.+...+.|.+.+..+..+.+++.+.+|++ +.|+.+|.+ +..+..+.++||.+.+
T Consensus 326 vi~~~~~~~~~~~---~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~-k~~~fFgly--altgra~S~~gp~lv~v 399 (438)
T COG2270 326 VILSIAALYLIFL---EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKG-KEGRFFGLY--ALTGRAASFLGPFLVAV 399 (438)
T ss_pred HHHHHHHHHHHHc---cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCc-cccceeehh--hhhhhHHHHHHHHHHHH
Confidence 8777665554444 22344555666778889999999999999999999 999999999 5699999999999777
Q ss_pred eeccccC
Q 005307 667 LSGYLGE 673 (703)
Q Consensus 667 ~~~~~~~ 673 (703)
+.+..++
T Consensus 400 ~t~iTg~ 406 (438)
T COG2270 400 ITQITGS 406 (438)
T ss_pred HHHHhcc
Confidence 3344443
No 121
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.73 E-value=4.5e-16 Score=162.92 Aligned_cols=308 Identities=15% Similarity=0.145 Sum_probs=219.1
Q ss_pred HHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc----hhhhHHhhccCC
Q 005307 292 MAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR----AVNRRYISDCVP 366 (703)
Q Consensus 292 ~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~----~~~~~~i~~~~~ 366 (703)
..+..++.++..|.++||+|||..+...++.. +..+...+. .+|.++ +.|+.++. ....++++|...
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~----~~~~~~----~~~l~g~~~~~~s~~~a~vadis~ 142 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ----GYWFFL----LLGLSGGFSAIFSVGFAYVADISS 142 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH----HHHHhh----hcccccchhhhhhhhhhheeeccc
Confidence 36788899999999999999999999998765 666666665 444443 56665554 778999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccc
Q 005307 367 LKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVP 444 (703)
Q Consensus 367 ~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~ 444 (703)
.++|...+|+.+..+..|..+||.+++.+ ..|. -.+|++..+..++..+...+++||+.....+..
T Consensus 143 ~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~----------a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~~-- 210 (463)
T KOG2816|consen 143 EEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGI----------ALVFLIAAASGILSLLYMLLFLPESLQEKERSD-- 210 (463)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCc----------hHHHHHHHHHHHHHHHHHhhccccccCcccccc--
Confidence 99999999999999999999999999999 5554 899999999999999999999999876544310
Q ss_pred cccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhh-CcchHHHHHHHH
Q 005307 445 QEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLL-TPSVKVQLFVYF 523 (703)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 523 (703)
+ .. +. ..............+....+.. .|..+.+++..+
T Consensus 211 --~--------~~-----~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~ 250 (463)
T KOG2816|consen 211 --A--------TL-----RE-------------------------LTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAF 250 (463)
T ss_pred --c--------cc-----cc-------------------------cCCCcccchhhhhhhhhhcccCCCccchHHHHHHH
Confidence 0 00 00 0000000000111122222211 344444444433
Q ss_pred HHHHHH-HHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhcccccc
Q 005307 524 MLKYAM-EILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILV 602 (703)
Q Consensus 524 ~~~~~~-~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~ 602 (703)
+..... .......+.|....+||+..+.+.+.+..+....+++.+..+.+...+|.++++..|+....++.++..+.
T Consensus 251 ~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~-- 328 (463)
T KOG2816|consen 251 LSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA-- 328 (463)
T ss_pred HHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--
Confidence 333332 22222456788889999999999999999999999988887788899999998888888888876544333
Q ss_pred ccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 603 PYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+..|.+....++ ........|...+..+...+++ ++|.++++. .....+...++|.+-+
T Consensus 329 -~~~w~~~~~~v~-~~~~~~~~pa~~s~~s~~v~~~-e~g~v~~~i--s~i~~l~~~~~~~~~~ 387 (463)
T KOG2816|consen 329 -TETWMMFAAGVV-VALAGIVFPAIRAFASILVSPE-EQGKVFGII--SGIEGLSGVVSPALYG 387 (463)
T ss_pred -ccchhhhHHHHH-HHhhcchhHHHHhHHHhhcccc-cccchhhHH--HHHHHHhhhhhHHHHH
Confidence 334444444443 3444567788899999999999 999999998 5577888888888554
No 122
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.66 E-value=4e-14 Score=143.99 Aligned_cols=387 Identities=10% Similarity=0.015 Sum_probs=234.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHH-HhcC----ccchhhhHHHHHHHHHHHHHhhhhhhhccc-cCchhHHHHH
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYS-LSLG----AAATLCGVIIGSMAVAQVFSSVYFSAWSNR-SYLKPLVFSS 319 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g----~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~Grr~~l~~~ 319 (703)
+.+.++.++..-+...++++.+...+-.|. .+++ .+.++..-+.++|..-.-+.++++|+++|| .|+|+.++.+
T Consensus 19 ~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lG 98 (498)
T COG3104 19 QPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLG 98 (498)
T ss_pred CCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 345678888889988888777666665554 3455 999999889999999889999999999999 8988888877
Q ss_pred HH-HHHHHHHHHhhcccc--hhHHHHHHHHHHhhcCcc--hhhhHHhhccCChh--hhhhHHHHHHHHHHHHHHHHHHhh
Q 005307 320 IV-LLVGNTLYAMAYDLN--SIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLK--LRMRASAGFVSASALGMACGPALA 392 (703)
Q Consensus 320 ~~-~~~~~~~~~~a~~~~--~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~--~R~~~~~~~~~~~~~G~~lgp~i~ 392 (703)
.+ ..+|.++.+.. + +...++++-++.++|.|. +...++++|.+|++ +|-..++++.++.++|..++|++.
T Consensus 99 ail~~iGh~~L~~~---~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~ 175 (498)
T COG3104 99 AILMAIGHLVLAIS---SVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIIT 175 (498)
T ss_pred HHHHHHHHHHHhcc---ccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHH
Confidence 55 55999998887 4 678899999999999998 99999999999854 377888999999999999999999
Q ss_pred hhh--cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccch
Q 005307 393 CLF--QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSE 470 (703)
Q Consensus 393 ~~l--~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (703)
+++ ..|| ...|.+.++-..+.++..++ .+..........+ ..+ .......+.....-
T Consensus 176 ~~~~~~~g~----------~~gF~~aavGm~~gl~~f~~-~~r~~~~~~~~~~-~~~---------~~~~~~~~~~~~~~ 234 (498)
T COG3104 176 GLLAINYGW----------HVGFGLAAVGMIIGLVIFLL-GRRHVKGIGGVPD-PNP---------LSFNFLLPVLGGLV 234 (498)
T ss_pred HHHHHhhCH----------HHHHHHHHHHHHHHHHHHHH-ccchhcCCCCCCC-ccc---------hhhhhhhhhHHHHH
Confidence 999 7787 78888877666666544433 3322111110000 000 00000000000000
Q ss_pred -hcccCC--c-c-ccccCCCCCCC---Ccc--cccccCCCcccHHHHHHhhCcchH---HHHHHHHHHHHHHHHHHhhhh
Q 005307 471 -AKQKDE--N-D-DQELDNDDHDE---DDE--DSKITHRPVTSIMSAYRLLTPSVK---VQLFVYFMLKYAMEILLAESS 537 (703)
Q Consensus 471 -~~~~~~--~-~-~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 537 (703)
...... . . .+......... ... ..+.-..++.. .+ +++++ .+++...+++..+.-..+.+.
T Consensus 235 ~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~e-----r~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~ 308 (498)
T COG3104 235 VMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DE-----RRRLLAAIPLFLFAVIFWALYEQMGSSLN 308 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HH-----HHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 000000 0 0 00000000000 000 00000000000 00 12222 223333334444444444555
Q ss_pred HHhhhhcccc----chhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhH-------HHHHHHHHHHHHHHhhcccc------
Q 005307 538 VITEHYFIWS----TSRVAIFLACLGLTVLPVNIIVGNYISNIFEER-------QVLLASEIIVCIGILLSFHI------ 600 (703)
Q Consensus 538 ~~~~~~~g~s----~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r-------~~~~~~~~~~~i~~~~~~~~------ 600 (703)
.|..+..+.+ ....+++.++..+..++.+.+.. ++..+.+++ .-+.+|+.+++.+++++...
T Consensus 309 ~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a-~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~ 387 (498)
T COG3104 309 LYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILA-ALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGG 387 (498)
T ss_pred HHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHH-HHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5655432222 12345677777777777777767 666664433 12345555555555432211
Q ss_pred -ccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 601 -LVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 601 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
....+.++.+...++..+|--+..|+..+++++..|+. -.+..++.. ......|..++..+.+
T Consensus 388 ~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~-~~s~~ma~w--fLt~a~~~~l~g~va~ 451 (498)
T COG3104 388 PSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPA-LKSFIMAMW--FLTVAAGQTLGGQVAG 451 (498)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHH-HHHHHHHHH--HHHHHHHHHhhceecc
Confidence 22356788888889999999999999999999999998 666667776 3344566666666444
No 123
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.65 E-value=2.2e-14 Score=143.08 Aligned_cols=360 Identities=13% Similarity=0.010 Sum_probs=218.2
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH-
Q 005307 244 RYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL- 322 (703)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~- 322 (703)
+.+|..++...+..+...+...-+.+.......-+| +....-|+.-+|++.+....+++-|+.|++|-|..++++.+.
T Consensus 41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln 119 (480)
T KOG2563|consen 41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN 119 (480)
T ss_pred hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence 345555555555555444444444444333344456 888889999999999999999999999999988887777654
Q ss_pred HHHHHHHHhhccc---chhH--HHHHHHHHHhhcCcc-hhhhHHh-hccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 323 LVGNTLYAMAYDL---NSIA--VLLIGRLFCGLGSAR-AVNRRYI-SDCVPLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 323 ~~~~~~~~~a~~~---~~~~--~l~i~r~l~Gi~~g~-~~~~~~i-~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
.+|..+-..+... +.++ ....+..+.+.+.-. -..++-+ +-|+++++|..+..+-.++..+|.++|.++...+
T Consensus 120 ~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppil 199 (480)
T KOG2563|consen 120 GIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPIL 199 (480)
T ss_pred HHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhcccee
Confidence 4888887776322 4455 677777777777666 3343444 4489999999999999999999999998888887
Q ss_pred -cccccccccccccchh--HHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhc
Q 005307 396 -QTNFKIYKLTFNEDTL--PGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAK 472 (703)
Q Consensus 396 -~~g~~~~~~~~~~~~~--~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (703)
..+.+ ...+.|.. .|+....++.+.+++..+..++.|+.....
T Consensus 200 V~~~~~---~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~------------------------------- 245 (480)
T KOG2563|consen 200 VPSSKD---SEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSA------------------------------- 245 (480)
T ss_pred cCCCCC---cchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCch-------------------------------
Confidence 22200 00111122 344445555555555555555544432210
Q ss_pred ccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHH
Q 005307 473 QKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVA 552 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g 552 (703)
......+..-..+.+.+++ ++++.++.+.+.+....++...+.+..-+.. -|++...+|
T Consensus 246 ------------------s~~~~~~~~f~~si~~~~~--n~~F~il~~~ygi~~g~F~~l~~~l~~~l~~-sgY~~~~aG 304 (480)
T KOG2563|consen 246 ------------------SQAALQDASFPKSIKSCFK--NRQFIILAICYGIGLGLFNSLSTLLNLALCP-SGYEGVFAG 304 (480)
T ss_pred ------------------hHhhhhcCcHHHHHHHHHc--CccHHHHHHHHhhhHHHHHHHHHHhhhcccc-ccCCccccc
Confidence 0000000111123333333 8888888877777666666665544433322 366667788
Q ss_pred HHHHhhhhhhhhHHHHHHhhhhhhhhhHHH-HHHHHHHHHHH-HhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHH
Q 005307 553 IFLACLGLTVLPVNIIVGNYISNIFEERQV-LLASEIIVCIG-ILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSL 630 (703)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~-~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (703)
+...+..+++++++.+.| .+.||.+.-+. +++......++ +.+..........+.+.....++|.+.....|+..-+
T Consensus 305 ~ig~l~iv~Gmlga~~~g-ii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~~g~~~~~~~Pig~El 383 (480)
T KOG2563|consen 305 YIGALMIVAGMLGALASG-IIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGLLGFFGTGYLPIGFEL 383 (480)
T ss_pred hhHHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHHHHHhhcCCCCcceee
Confidence 888888888888888888 89999876544 33333333333 2222221112333444555555566666677777767
Q ss_pred HHhhccCCCcccccchhhhHHhhhhhhhhhccc
Q 005307 631 LSRVMSSRLSRGTYNGGLLSTEAGTLARVIADG 663 (703)
Q Consensus 631 ~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~ 663 (703)
-.|..-|. .-|+..|+.+ ..+.+-+++-..
T Consensus 384 gvE~TyPv-~E~tSsGll~--~~gq~f~~~~~~ 413 (480)
T KOG2563|consen 384 GVETTYPV-AEGTSSGLLN--LSGQIFGVILVF 413 (480)
T ss_pred eeeecccc-CCcccceeEE--eehhHHHHHHHH
Confidence 77766665 4555577763 244444444444
No 124
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.57 E-value=3.2e-16 Score=168.58 Aligned_cols=385 Identities=15% Similarity=0.156 Sum_probs=3.0
Q ss_pred HHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH-HHHHHHHH
Q 005307 252 LNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL-LVGNTLYA 330 (703)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~-~~~~~~~~ 330 (703)
.+++..++.++..+.....+..+.+.|+++.++.|++.+.+-++.++..++..++.+|..|-+.+-++.++ .+|+++++
T Consensus 7 ~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~ 86 (539)
T PF03137_consen 7 FLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA 86 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh
Confidence 33444445566777777888999999999999999999999999999999999999987665566666554 48888876
Q ss_pred hhccc-----------------------------------------------chhHHHHHHHHHHhhcCcc--hhhhHHh
Q 005307 331 MAYDL-----------------------------------------------NSIAVLLIGRLFCGLGSAR--AVNRRYI 361 (703)
Q Consensus 331 ~a~~~-----------------------------------------------~~~~~l~i~r~l~Gi~~g~--~~~~~~i 361 (703)
+-+.. .-++.++++.++.|+|.+. +...+|+
T Consensus 87 lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYi 166 (539)
T PF03137_consen 87 LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYI 166 (539)
T ss_dssp -----------------------------------------------------------------SSS------------
T ss_pred ccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeee
Confidence 54200 0146788999999999887 9999999
Q ss_pred hccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh---cccccccc----------cc-cccchhHHHHHHHHHHHHHHHH
Q 005307 362 SDCVPLKLRMRASAGFVSASALGMACGPALACLF---QTNFKIYK----------LT-FNEDTLPGWVMALLWLVYLLWL 427 (703)
Q Consensus 362 ~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l---~~g~~~~~----------~~-~~~~~~~f~i~~~~~~~~~i~~ 427 (703)
=|.+++++-+..+|++.++..+|+++|-++|+.+ ..+|...+ .. ..+|...|++.+++.++..+..
T Consensus 167 DDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl 246 (539)
T PF03137_consen 167 DDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL 246 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987 33443111 11 2367777777777766666555
Q ss_pred HHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHH
Q 005307 428 WISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSA 507 (703)
Q Consensus 428 ~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (703)
.+ +|...+...+..+..+..+ .+ .++.+.++. . +.+.........+.-.+.+
T Consensus 247 ~~-FPk~lp~~~~~~~~~~~~~-~~--------------------~~~~~~~~~----~--~~~~~~~~~~~~~df~~~l 298 (539)
T PF03137_consen 247 FF-FPKKLPGTSERQEEKESSE-RK--------------------EEDSDKDSF----K--DPKSKKSFGKSIKDFPKAL 298 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hc-CCccCCCcccccchhhhhh-cc--------------------hhhhhhhcc----c--ccccccchhhhhhhHHHHH
Confidence 44 4544332211000000000 00 000000000 0 0000000001112223333
Q ss_pred HHhh-CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhh--HHHHH
Q 005307 508 YRLL-TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEE--RQVLL 584 (703)
Q Consensus 508 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~--r~~~~ 584 (703)
+++. ||.+....+...+..+...++.++.|-|++.+++.++.+++++..+..+.+...+.++||++++|+.. |..+.
T Consensus 299 ~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~ 378 (539)
T PF03137_consen 299 KRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAK 378 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHH
Confidence 4443 88888888888888889999999999999999999999999998888887777777888899998753 33333
Q ss_pred HHHHHHHHHHhh---ccccc------------c------------------------------------ccchhHHHHHH
Q 005307 585 ASEIIVCIGILL---SFHIL------------V------------------------------------PYSVPQYVGSA 613 (703)
Q Consensus 585 ~~~~~~~i~~~~---~~~~~------------~------------------------------------~~~~~~~~~~~ 613 (703)
+..+...++.++ .+... . ...+..+++..
T Consensus 379 ~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~ 458 (539)
T PF03137_consen 379 FCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILL 458 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHH
Confidence 333222222211 10000 0 00122333333
Q ss_pred HHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 614 LITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
++..+..+.........+-+.+|++ +|..+.|+.. .+...+|.+-||++.+
T Consensus 459 ~~~~~~~~~~~~p~~~i~LR~V~~~-~rs~AlGv~~-~~~rllg~IPgPIifG 509 (539)
T PF03137_consen 459 FILSFFTFMSQVPSTLITLRCVPPE-QRSFALGVQW-LIIRLLGFIPGPIIFG 509 (539)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHhcccchheeeeccCChh-hcchhhhHHH-HHHHhhcCcchHHHHh
Confidence 3333333344444555666888888 8888888863 3466788888999444
No 125
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.50 E-value=7.3e-13 Score=142.14 Aligned_cols=296 Identities=18% Similarity=0.195 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH-HHHHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL-LVGNT 327 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~-~~~~~ 327 (703)
.+.++.+..+...+..+.+...+..+-+.|+++.++.|++.+.+-++..+...+..++.-|.-|-+.+-++.+. .++++
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 34455556666666667777788888899999999999999999999999999999999998887777777654 48888
Q ss_pred HHHhhc-------------------c---------------------------cch--h-HHHHHHHHHHhhcCcc--hh
Q 005307 328 LYAMAY-------------------D---------------------------LNS--I-AVLLIGRLFCGLGSAR--AV 356 (703)
Q Consensus 328 ~~~~a~-------------------~---------------------------~~~--~-~~l~i~r~l~Gi~~g~--~~ 356 (703)
++++-+ . ..+ + .+++++.++.|+|... +.
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 877652 0 000 2 3678889999999887 99
Q ss_pred hhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh---ccccccccc-------c-cccchhHHHHHHHHHHHHHH
Q 005307 357 NRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF---QTNFKIYKL-------T-FNEDTLPGWVMALLWLVYLL 425 (703)
Q Consensus 357 ~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l---~~g~~~~~~-------~-~~~~~~~f~i~~~~~~~~~i 425 (703)
..+|+=|.+..++-+..+|++.....+|+++|-++|+++ +..+...+. . ..+|+.-|++.+.+.++..+
T Consensus 258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~ 337 (735)
T KOG3626|consen 258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAV 337 (735)
T ss_pred CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 333311111 1 24677778888888777776
Q ss_pred HHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHH
Q 005307 426 WLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIM 505 (703)
Q Consensus 426 ~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (703)
..++ +|...+...+..+. . +.+. .+.++ + ..+.........+.-.+
T Consensus 338 p~f~-fPk~lp~~~~~~~~-~------~~~~-------------------~k~~~---~----~~~~~~~~~~~ikdfp~ 383 (735)
T KOG3626|consen 338 PLFF-FPKELPKSQKRKRA-R------DLHV-------------------LKTES---G----GAKSDKTFGKKIKDFPK 383 (735)
T ss_pred HHHh-CcccCccccccchh-h------hhcc-------------------ccccc---c----cccCCcchhhhHHHHHH
Confidence 6555 56554432210000 0 0000 00000 0 00000000011112233
Q ss_pred HHHHhh-CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhh
Q 005307 506 SAYRLL-TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFE 578 (703)
Q Consensus 506 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g 578 (703)
.+++++ ||.+...++...+....+.++.+++|-|++.+||.++..+.++.+..++.++..+.++||++++|+.
T Consensus 384 s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfk 457 (735)
T KOG3626|consen 384 SIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFK 457 (735)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeec
Confidence 344444 8888888889999999999999999999999999999999999989899888888888989999864
No 126
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.49 E-value=2.6e-11 Score=119.43 Aligned_cols=268 Identities=10% Similarity=0.101 Sum_probs=171.7
Q ss_pred HHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhccc
Q 005307 257 TFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDL 335 (703)
Q Consensus 257 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~ 335 (703)
..+...+..+..|.+-.+.+++|.+..+++.+..+.....++..++.|.++||+|||+.-+...++. +++ ++-..
T Consensus 43 Y~La~~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~sc-l~k~~--- 118 (354)
T PF05631_consen 43 YLLAMAADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSC-LTKHS--- 118 (354)
T ss_pred HHHHHHHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHhc---
Confidence 4445566667777776667889999999999999999999999999999999999998776665555 554 45555
Q ss_pred chhHHHHHHHHHHhhcCcc--hhhhHH-hhcc----CChhhhhhHHHHHH-HHHHHHHHHHHHhhhhh--cccccccccc
Q 005307 336 NSIAVLLIGRLFCGLGSAR--AVNRRY-ISDC----VPLKLRMRASAGFV-SASALGMACGPALACLF--QTNFKIYKLT 405 (703)
Q Consensus 336 ~~~~~l~i~r~l~Gi~~g~--~~~~~~-i~~~----~~~~~R~~~~~~~~-~~~~~G~~lgp~i~~~l--~~g~~~~~~~ 405 (703)
++++.++++|++.|++... .+-.++ +.|. +|++..+..++... ...++-.+++.+++-++ ..+.
T Consensus 119 ~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~------ 192 (354)
T PF05631_consen 119 SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGF------ 192 (354)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCC------
Confidence 8999999999999999887 666665 4443 34443344333222 12222223333333333 2221
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCC
Q 005307 406 FNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDND 485 (703)
Q Consensus 406 ~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (703)
+-..||....++.+++.+++....+|.+....++
T Consensus 193 --g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~-------------------------------------------- 226 (354)
T PF05631_consen 193 --GPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSS-------------------------------------------- 226 (354)
T ss_pred --CCcchHHHHHHHHHHHHHHHHhcccccCCCcccc--------------------------------------------
Confidence 0178999998888888877666666654321110
Q ss_pred CCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhH
Q 005307 486 DHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPV 565 (703)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 565 (703)
. .....-...++.+.+ +|+++.+.++..++-.+.+.+...+.+-+... + ...-.|++++...+..++|
T Consensus 227 ----~----~~~~~~~~a~~~i~~--d~ril~LG~~qslFE~smy~FVflWtPaL~~~-~-~~~P~GlIFssFM~a~MlG 294 (354)
T PF05631_consen 227 ----S----SLSGSFREAWRAILS--DPRILLLGLIQSLFEGSMYLFVFLWTPALDPD-D-EELPLGLIFSSFMVAMMLG 294 (354)
T ss_pred ----c----chHHHHHHHHHHHHc--CchhHHHHHHHHHHHHHHHHheeeeeceecCC-C-CCCCchHHHHHHHHHHHHH
Confidence 0 000001112233333 78999999999998888888877777666521 1 2233689999888889999
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 005307 566 NIIVGNYISNIFEERQVLLASEIIVCI 592 (703)
Q Consensus 566 ~~~~~~~l~~r~g~r~~~~~~~~~~~i 592 (703)
+.+....+.++......+...+.+.++
T Consensus 295 S~lf~~l~s~~~~~e~~l~~v~~~aa~ 321 (354)
T PF05631_consen 295 SSLFSRLLSKSLRPESLLRYVFAVAAV 321 (354)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 888762344444444443333333333
No 127
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.46 E-value=3.3e-13 Score=119.96 Aligned_cols=134 Identities=24% Similarity=0.370 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhcc
Q 005307 288 IIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDC 364 (703)
Q Consensus 288 i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~ 364 (703)
+.+.+.++..++.++.|+++||+|||+.+..+.... ++.+++.++ ++++.+++.+++.|++.+. +...+++.|.
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 79 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS---SNITVLIIARFLQGFGAAFALVAGAALIADI 79 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 345677889999999999999999999988886644 777888888 8999999999999999876 7888999999
Q ss_pred CChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCC
Q 005307 365 VPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREP 434 (703)
Q Consensus 365 ~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~ 434 (703)
+|+++|++++++.+....+|..+||.+++.+ ..+| ++.+++.+++.++..+..++..||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 80 YPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGW----------RAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred CChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccch----------HHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999999999999999988 5676 8889988888877777766666653
No 128
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.46 E-value=1.4e-12 Score=138.65 Aligned_cols=179 Identities=12% Similarity=0.122 Sum_probs=135.7
Q ss_pred HHHHHHHHhhhhhccchhHHHHhcCccc--------hhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HH
Q 005307 255 VNTFLYMVNTYVIVPTADNYSLSLGAAA--------TLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VG 325 (703)
Q Consensus 255 ~~~~~~~~~~~~~~~~l~~~~~~~g~s~--------~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~ 325 (703)
+..++............+.+.++.|.++ ...|.+.++..++..++.++.|+++||+|||++++++.++. ++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~ 294 (418)
T TIGR00889 215 FFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALR 294 (418)
T ss_pred HHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3334333333444456677777776543 56799999999999999999999999999999999887755 66
Q ss_pred HHHHHhhcc-cchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHH-HHHHHHHHHHHHhhhhh--cccc
Q 005307 326 NTLYAMAYD-LNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFV-SASALGMACGPALACLF--QTNF 399 (703)
Q Consensus 326 ~~~~~~a~~-~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~-~~~~~G~~lgp~i~~~l--~~g~ 399 (703)
..++..... ..+++.+++.+++.|++.+. +....+++|++|+++|++++|+.+ ...++|.++||+++|++ ..|-
T Consensus 295 ~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~ 374 (418)
T TIGR00889 295 FGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA 374 (418)
T ss_pred HHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 555555310 11356778889999999776 777889999999999999999997 67899999999999988 3220
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHhccCCCcc
Q 005307 400 KIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLE 437 (703)
Q Consensus 400 ~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~ 437 (703)
....+|+..|++.+++.++..++.++++||+...
T Consensus 375 ----~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 375 ----YGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred ----ccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 0001249999999988888888888888887543
No 129
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.44 E-value=2.7e-12 Score=142.65 Aligned_cols=137 Identities=11% Similarity=-0.043 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhh
Q 005307 286 GVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYIS 362 (703)
Q Consensus 286 g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~ 362 (703)
.+...+..++.+++.++.|+++||+|||+++++++++. +++++++++ ++...+++.+++.|++.+. ++..++++
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~---~s~~~ll~~~~l~g~~~~~~~~~~~a~~a 674 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFG---NSESAMIALLCLFGGLSIAAWNALDVLTV 674 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777899999999999999999999999887765 888888888 7888888888888876554 88889999
Q ss_pred ccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCc
Q 005307 363 DCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPL 436 (703)
Q Consensus 363 ~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~ 436 (703)
|++|.+.|++++|+..++..+|.++||++++.+ ..+. ..+|++.+++.++++++.+ ++||+..
T Consensus 675 El~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~----------~~pf~i~a~~lll~~ll~~-~LPET~~ 738 (742)
T TIGR01299 675 ELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITK----------AAPILFASAALACGGLLAL-KLPDTRG 738 (742)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------HHHHHHHHHHHHHHHHHHH-hCCCCcc
Confidence 999999999999999999999999999999988 5443 6788888877777665554 4688764
No 130
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.44 E-value=3.2e-12 Score=139.14 Aligned_cols=169 Identities=19% Similarity=0.241 Sum_probs=122.8
Q ss_pred HHHHHhhhhhccchhHHHH-hcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH-HHHHHH-H--Hhh
Q 005307 258 FLYMVNTYVIVPTADNYSL-SLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL-LVGNTL-Y--AMA 332 (703)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~-~~~~~~-~--~~a 332 (703)
++....++.....+|.+.+ .+|.+....+++.+...++..++.+++|+++||+|||++++.+.+. .++.+. . ..+
T Consensus 260 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~ 339 (490)
T PRK10642 260 IATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINS 339 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344455555566787774 5788888888888889999999999999999999999988777542 322222 2 223
Q ss_pred cccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cc-cccccccccc
Q 005307 333 YDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QT-NFKIYKLTFN 407 (703)
Q Consensus 333 ~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~-g~~~~~~~~~ 407 (703)
++...+++++++.|++.+. .....++.|.+|++.|+.++|+......++..++|.+.+++ .. +|
T Consensus 340 ---~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~-------- 408 (490)
T PRK10642 340 ---NVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNL-------- 408 (490)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc--------
Confidence 5678888899999887655 66777888999999999999975444555567888888877 33 34
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhccCCCccccc
Q 005307 408 EDTLPGWVMALLWLVYLLWLWISFREPPLETKE 440 (703)
Q Consensus 408 ~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~ 440 (703)
+.++++..+++++.++.. +++||+|++..+
T Consensus 409 --~~~~~~~~~~~~i~~~~~-~~~pes~~~~~~ 438 (490)
T PRK10642 409 --MMPAYYLMVVAVIGLITG-VTMKETANRPLK 438 (490)
T ss_pred --hHHHHHHHHHHHHHHHHH-HHhccccCCCCC
Confidence 677777666666665544 457999886543
No 131
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=99.42 E-value=6.4e-10 Score=112.97 Aligned_cols=345 Identities=10% Similarity=0.021 Sum_probs=217.7
Q ss_pred hccchhHHHHh--cCccchhhh-HHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHH
Q 005307 267 IVPTADNYSLS--LGAAATLCG-VIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLL 342 (703)
Q Consensus 267 ~~~~l~~~~~~--~g~s~~~~g-~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~ 342 (703)
.-|.+.+|..+ .|.+..++. -+.-...=.++...++...+.|..|.||+++.+.+.. +..++..+. ++.+.+-
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~---~sv~~mq 98 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG---TSVLAMQ 98 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH---CcHHHHH
Confidence 34555555544 577877764 3455555567778889999999999999999987754 888888888 9999999
Q ss_pred HHHHHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccccccchhHHHHHHHHH
Q 005307 343 IGRLFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKIYKLTFNEDTLPGWVMALLW 420 (703)
Q Consensus 343 i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~~~~~~~~~~f~i~~~~~ 420 (703)
+..++.|++.+. .+..+|+--..|+++-.++.+...++.-+|..+|.++|-.+ ..++ ..|+..+++.....
T Consensus 99 ~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~-------~sy~~L~~isl~~~ 171 (412)
T PF01770_consen 99 LMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG-------VSYFQLNYISLASV 171 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCHHHHHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999999888 5443 13466666666555
Q ss_pred HHHHHHHHHhccCCCcccccccccccccc-ccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCC
Q 005307 421 LVYLLWLWISFREPPLETKENLVPQEANA-GLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHR 499 (703)
Q Consensus 421 ~~~~i~~~~~l~e~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (703)
.+++++. +++|.+++..--+++..+... ...+.+..++... ... ...+..+.....
T Consensus 172 ~~a~~~~-~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~~~~~ 228 (412)
T PF01770_consen 172 SLALLIA-LFLPMPKRSLFFHRKPPAEQDANESESDKMNESPE---------------------SSS-STEKSPSTESSS 228 (412)
T ss_pred HHHHHHH-HHcCCCCcccceeccCccccccccccccccccccc---------------------ccc-ccccCcccccch
Confidence 5555444 457876653322111110000 0000000000000 000 000000001111
Q ss_pred Ccc----cHHHHHHhh-CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhh--ccccchhHHHHHHhhhhhhhhHHHHHHhh
Q 005307 500 PVT----SIMSAYRLL-TPSVKVQLFVYFMLKYAMEILLAESSVITEHY--FIWSTSRVAIFLACLGLTVLPVNIIVGNY 572 (703)
Q Consensus 500 ~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~~~~ 572 (703)
... -++++.... +|.++...+-..+...++..+.++......+. -+-.....|.+-++..+.+.++.+.+| +
T Consensus 229 ~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g-~ 307 (412)
T PF01770_consen 229 RKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAG-Y 307 (412)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHh-H
Confidence 111 223333322 67776666666666666666666555555443 122334457888888888888888877 7
Q ss_pred hhhhhhhHHHHHHHHHHHH-HHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhh
Q 005307 573 ISNIFEERQVLLASEIIVC-IGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGL 648 (703)
Q Consensus 573 l~~r~g~r~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 648 (703)
+..++.+..-+.++..... .+++++... ..+.|...++.++++..+....++...-++.....+ .-|-++|+.
T Consensus 308 v~~~w~~~~~l~l~~~S~l~a~~L~lm~~--t~~Iwv~Y~~yIif~~~y~fliTiA~~qIA~~l~~e-~yaLVFGiN 381 (412)
T PF01770_consen 308 VKVNWDRWGELALGVFSLLQAGLLFLMSF--TGNIWVCYAGYIIFRSLYMFLITIASFQIAKNLSEE-RYALVFGIN 381 (412)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-ceeeeeeeH
Confidence 7555555444444433222 222333333 467788888888888888888888888888888877 788778874
No 132
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.38 E-value=2e-11 Score=129.66 Aligned_cols=157 Identities=21% Similarity=0.149 Sum_probs=126.1
Q ss_pred HHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhH
Q 005307 261 MVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIA 339 (703)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~ 339 (703)
.++.+.....+|.+..+.|. ...++..+.+.++..++.++.|++.||+|||+.+..+.++. ++.++..+. ++.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 303 (399)
T PRK05122 229 SIGFGTIATFITLYYAARGW--DGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA---PSPW 303 (399)
T ss_pred HHHHHHHHHHHHHHHHHccc--ccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh---ccHH
Confidence 34444444556667666665 34567778888999999999999999999999888776654 777777777 7888
Q ss_pred HHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHH
Q 005307 340 VLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWV 415 (703)
Q Consensus 340 ~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i 415 (703)
.++++.++.|++.+. +.....+.|.+|+++|++++|+++....+|..++|.+.|++ .+|| ++.|++
T Consensus 304 ~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~----------~~~~~~ 373 (399)
T PRK05122 304 MALIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGY----------PSIFLA 373 (399)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH----------HHHHHH
Confidence 888999999999876 66677788999999999999999999999999999988888 5676 899999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 005307 416 MALLWLVYLLWLWISFR 432 (703)
Q Consensus 416 ~~~~~~~~~i~~~~~l~ 432 (703)
.+++.++.+++.++..+
T Consensus 374 ~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 374 AALAALLGLALTWLLYR 390 (399)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 88888877766655433
No 133
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.36 E-value=2.5e-11 Score=128.45 Aligned_cols=155 Identities=18% Similarity=0.177 Sum_probs=121.2
Q ss_pred hhhhccchhHHH-HhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHH
Q 005307 264 TYVIVPTADNYS-LSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVL 341 (703)
Q Consensus 264 ~~~~~~~l~~~~-~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l 341 (703)
.......+|.+. +++|.++.+.|++.+...++.+++.+++|+++||+|||+.+..+.+.. +......++ ++.+.+
T Consensus 232 ~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 308 (393)
T PRK15011 232 NSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA---HSPAIL 308 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH---hhHHHH
Confidence 333444567665 458999999999988888888899999999999999998877665543 444444556 778888
Q ss_pred HHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHH
Q 005307 342 LIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMA 417 (703)
Q Consensus 342 ~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~ 417 (703)
++.+++.+++.|. +....+..|..|+ +|++++++++....+|..+||.++|++ .+|| +.+|++..
T Consensus 309 l~~~~l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~----------~~~~~~~~ 377 (393)
T PRK15011 309 LGLQLLNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNY----------HAVFWFAL 377 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------HHHHHHHH
Confidence 8899988887665 5666778888875 599999999999999999999999998 5677 88988888
Q ss_pred HHHHHHHHHHHHhccC
Q 005307 418 LLWLVYLLWLWISFRE 433 (703)
Q Consensus 418 ~~~~~~~i~~~~~l~e 433 (703)
++.++.++..+ ..||
T Consensus 378 ~~~~~~~~~~~-~~~~ 392 (393)
T PRK15011 378 VMIIATLFCLL-RIKD 392 (393)
T ss_pred HHHHHHHHHHH-hhcC
Confidence 77777665554 3554
No 134
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=99.34 E-value=6.4e-11 Score=125.52 Aligned_cols=345 Identities=13% Similarity=0.083 Sum_probs=205.1
Q ss_pred cchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhcccc---C--chhHHHHHHH-HHHHHHHHHhhcc-cchhHHH
Q 005307 269 PTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRS---Y--LKPLVFSSIV-LLVGNTLYAMAYD-LNSIAVL 341 (703)
Q Consensus 269 ~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~---G--rr~~l~~~~~-~~~~~~~~~~a~~-~~~~~~l 341 (703)
+..|.+.+++|+++.+...+.+...+...+ -|++|.++|.+ | ||+.++++.+ ..++.+.+++... ..+....
T Consensus 11 ~~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 11 AIYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 445667788999999999988888888765 67899999984 4 5666666644 3355555554411 1356666
Q ss_pred HHHHHHHhhcCcc--hhhhHHhhccCC--hhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHH
Q 005307 342 LIGRLFCGLGSAR--AVNRRYISDCVP--LKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWV 415 (703)
Q Consensus 342 ~i~r~l~Gi~~g~--~~~~~~i~~~~~--~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i 415 (703)
.+.-++..+|.+. .++.+.+.|... ++.||...+....+..+|.++|..++|.+ ..++ ++.|++
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~----------~~~f~i 159 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGP----------QGVFLI 159 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCC----------eEEehH
Confidence 6677777888776 889999998763 44488889999999999999999999988 5555 888888
Q ss_pred HHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCccccc
Q 005307 416 MALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSK 495 (703)
Q Consensus 416 ~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (703)
.+++..+..+..++..+|.+....... .... .+....
T Consensus 160 ~~~~~~l~~~~~~~~~~e~~~~~~~~~---------------------------------~~~~----------~~~~~~ 196 (433)
T PF03092_consen 160 SAALPLLMLIVALFLLEERKVRPADEV---------------------------------FSFG----------KEEVPC 196 (433)
T ss_pred HHHHHHHHHHHHHHhhhhccccccchh---------------------------------hccc----------ccccch
Confidence 888888877776666666221111000 0000 000000
Q ss_pred ccCCCcccHHHHHHhh-CcchHHHHH-HHHHHHHHHHHHHhhhhHHhhhhcc---ccchhHHHHHHhhhhhhhhHHHHHH
Q 005307 496 ITHRPVTSIMSAYRLL-TPSVKVQLF-VYFMLKYAMEILLAESSVITEHYFI---WSTSRVAIFLACLGLTVLPVNIIVG 570 (703)
Q Consensus 496 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~~~~~~~~~~~~~~~~~~ 570 (703)
.....+...+++++.. .+.++...+ ..++..+.........-.+..+..+ +++...|.+..+.+++.+++..+..
T Consensus 197 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~ 276 (433)
T PF03092_consen 197 LFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYR 276 (433)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000112333444433 555555544 2222222211111101112233345 7888888887666677777766666
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhh--cccc------ccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCccc
Q 005307 571 NYISNIFEERQVLLASEIIVCIGILL--SFHI------LVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRG 642 (703)
Q Consensus 571 ~~l~~r~g~r~~~~~~~~~~~i~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 642 (703)
....+..-|+++.++.++.++..+. ++.. +.+.. +..+.-.++..+......-....+.++..|+. .-|
T Consensus 277 -~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~-~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G-~Eg 353 (433)
T PF03092_consen 277 -KYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQ-WFALGDTILEEVIGMIAFMPSLVLAARLCPKG-SEG 353 (433)
T ss_pred -HHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCe-EEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCC-chH
Confidence 4445556677776666555444332 1111 01122 22222233334444444556667899999999 889
Q ss_pred ccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 643 TYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 643 ~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
+..|++.+ ..++|..++..++. +...++
T Consensus 354 t~yall~s--~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 354 TVYALLAS--FSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHcC
Confidence 99999844 77788877777665 434333
No 135
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.33 E-value=4.8e-11 Score=125.71 Aligned_cols=163 Identities=14% Similarity=0.051 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNT 327 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~ 327 (703)
.++...+..++............|.+.+++|.++.++|++.++..++.+++.++.|++.||+|+|+++.++.+.. +..+
T Consensus 206 ~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~ 285 (382)
T TIGR00902 206 MNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWA 285 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 344445555655666666667788888999999999999999999999999999999999999999998887755 8888
Q ss_pred HHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHH-HHHHHHHHHHHHhhhhh--ccccccc
Q 005307 328 LYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFV-SASALGMACGPALACLF--QTNFKIY 402 (703)
Q Consensus 328 ~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~-~~~~~G~~lgp~i~~~l--~~g~~~~ 402 (703)
+++++ ++++.+++.+++.|++.|. +....++.+. |+++|+.+.++++ ...++|.++||.++|++ .+|
T Consensus 286 ~~~~~---~~~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g---- 357 (382)
T TIGR00902 286 IIGAI---EAFPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG---- 357 (382)
T ss_pred HHHhH---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 88888 9999999999999999887 8888899988 9999999999986 57889999999999999 556
Q ss_pred ccccccchhHHHHHHHHHHHHHHH
Q 005307 403 KLTFNEDTLPGWVMALLWLVYLLW 426 (703)
Q Consensus 403 ~~~~~~~~~~f~i~~~~~~~~~i~ 426 (703)
...|++.++++++.+++
T Consensus 358 -------~~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 358 -------AGTFVFMAIIAAAAFFL 374 (382)
T ss_pred -------HHHHHHHHHHHHHHHHH
Confidence 35567777776655433
No 136
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.32 E-value=1.9e-11 Score=128.80 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=120.6
Q ss_pred HhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccch--h
Q 005307 262 VNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNS--I 338 (703)
Q Consensus 262 ~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~--~ 338 (703)
..........+.+.++++.+..+.+++.+.+.++..++.++.|+++||+|||+.+.++.+.. ++.++..+. ++ .
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 295 (377)
T TIGR00890 219 VSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFI---PMLND 295 (377)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc---ccchh
Confidence 33333334556677889999889999999999999999999999999999999888876644 666666666 43 3
Q ss_pred HHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHH
Q 005307 339 AVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGW 414 (703)
Q Consensus 339 ~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~ 414 (703)
..+++..++.|++.|. +...+++.|.+|+++|++++|+.+....+|..+||.++|.+ ..|| +++|+
T Consensus 296 ~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~----------~~~f~ 365 (377)
T TIGR00890 296 VLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGF----------EYTFI 365 (377)
T ss_pred HHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhch----------hhHHH
Confidence 3345667778887765 67788899999999999999999999999999999999988 6777 88888
Q ss_pred HHHHHHHHHH
Q 005307 415 VMALLWLVYL 424 (703)
Q Consensus 415 i~~~~~~~~~ 424 (703)
+.+++.++++
T Consensus 366 ~~~~~~~~~~ 375 (377)
T TIGR00890 366 VTGAFALTSL 375 (377)
T ss_pred HHHHHHHHhc
Confidence 8877666543
No 137
>PRK12382 putative transporter; Provisional
Probab=99.32 E-value=5.6e-11 Score=125.89 Aligned_cols=156 Identities=21% Similarity=0.188 Sum_probs=126.3
Q ss_pred HHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhH
Q 005307 261 MVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIA 339 (703)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~ 339 (703)
..+........|.+.++.+.+ ..++..+.+.++..+++++.|++.||+|||+.+..+.+.. ++.++..+. ++.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~~~~ 303 (392)
T PRK12382 229 GVGFAVIGTFVSLYFASKGWA--MAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA---PTAW 303 (392)
T ss_pred HHHHhHHHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc---ccHH
Confidence 344444445566777776654 3566677788888999999999999999998888776544 777777777 7888
Q ss_pred HHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHH
Q 005307 340 VLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWV 415 (703)
Q Consensus 340 ~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i 415 (703)
.++++.++.|++.+. +...+.+.+.+|+++|++++|+++....+|..+||.++|++ ..|| ++.|++
T Consensus 304 ~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~----------~~~~~~ 373 (392)
T PRK12382 304 VALAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGY----------PSVFLA 373 (392)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------hHHHHH
Confidence 888899999998776 77778889999999999999999999999999999999998 6687 899999
Q ss_pred HHHHHHHHHHHHHHhc
Q 005307 416 MALLWLVYLLWLWISF 431 (703)
Q Consensus 416 ~~~~~~~~~i~~~~~l 431 (703)
.+++.++..++.++..
T Consensus 374 ~~~~~~~~~~~~~~~~ 389 (392)
T PRK12382 374 GAISAVLGIIVTILSF 389 (392)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9888877776665543
No 138
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.32 E-value=4.4e-11 Score=124.56 Aligned_cols=166 Identities=27% Similarity=0.327 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHhc-CccchhhhHHHHHHHHHHHHHhhhhhhhccccCchh-HHHHHHHHH-HHH
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADNYSLSL-GAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKP-LVFSSIVLL-VGN 326 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~-~l~~~~~~~-~~~ 326 (703)
++...+..++............|.+.++. |.+..+.+++.+...++..++.++.|+++||+|||+ ++..+.+.. ++.
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 256 (352)
T cd06174 177 LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGL 256 (352)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555666666677788888775 899999999999999999999999999999999999 888886654 888
Q ss_pred HHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccccccc
Q 005307 327 TLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIY 402 (703)
Q Consensus 327 ~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~ 402 (703)
++..+. ++.+.+++..++.|++.+. +...+++.|..|+++|++.+|+.+....+|..++|.+.+.+ ..+|
T Consensus 257 ~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~--- 330 (352)
T cd06174 257 LLLALA---PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGY--- 330 (352)
T ss_pred HHHHHh---ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc---
Confidence 888888 8889999999999999887 88999999999999999999999999999999999999998 5676
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHH
Q 005307 403 KLTFNEDTLPGWVMALLWLVYLLWLW 428 (703)
Q Consensus 403 ~~~~~~~~~~f~i~~~~~~~~~i~~~ 428 (703)
+.++++.+++.++..++..
T Consensus 331 -------~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 331 -------GGVFLILAALALLAALLLL 349 (352)
T ss_pred -------chHHHHHHHHHHHHHHHhe
Confidence 8999998888877765543
No 139
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.32 E-value=3.1e-11 Score=128.77 Aligned_cols=162 Identities=17% Similarity=0.184 Sum_probs=129.0
Q ss_pred HHHhhhhhccchhHHHHhcCccch----hhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcc
Q 005307 260 YMVNTYVIVPTADNYSLSLGAAAT----LCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYD 334 (703)
Q Consensus 260 ~~~~~~~~~~~l~~~~~~~g~s~~----~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~ 334 (703)
.....+...+.++.+..+.+.+.. ..+.+.++..++..++.+++|+++||+|||+++..+.+.. ++.+...+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-- 308 (408)
T PRK09874 231 IQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-- 308 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh--
Confidence 334444555667777776533322 3466677788888999999999999999999888876644 666667777
Q ss_pred cchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccch
Q 005307 335 LNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDT 410 (703)
Q Consensus 335 ~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~ 410 (703)
++.+.+++.+++.|++.+. +...+++.+..|+++||+.+++.+....+|..+||.++|++ .+|| +
T Consensus 309 -~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~----------~ 377 (408)
T PRK09874 309 -QTPLQLGILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGF----------R 377 (408)
T ss_pred -ccHHHHHHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcch----------h
Confidence 7888899999999999877 77888888899999999999999999999999999999998 6676 8
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCC
Q 005307 411 LPGWVMALLWLVYLLWLWISFREP 434 (703)
Q Consensus 411 ~~f~i~~~~~~~~~i~~~~~l~e~ 434 (703)
++|++.+++.++..++.++..+++
T Consensus 378 ~~f~~~~~~~l~~~~~~~~~~~~~ 401 (408)
T PRK09874 378 AVFLVTAGVVLFNAVYSWNSLRRR 401 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988888777766554443
No 140
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.32 E-value=1.9e-11 Score=130.73 Aligned_cols=146 Identities=14% Similarity=0.055 Sum_probs=122.3
Q ss_pred cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--
Q 005307 278 LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR-- 354 (703)
Q Consensus 278 ~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~-- 354 (703)
.+.+..+.|++.++..++..++.+++|+++||+|||+.+..+.++. ++.++.+++ ++.+.+++.+++.|++.+.
T Consensus 257 ~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~---~~~~~~~~~~~l~g~~~~~~~ 333 (420)
T PRK09528 257 PEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFA---TGPLEVSILKLLHAFEVPFLL 333 (420)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHH
Confidence 3566678899999999999999999999999999999888776544 777788888 8999999999999998776
Q ss_pred hhhhHHhhccCChhhhhhHHHH-HHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHHHHHHHHHHHHHhc
Q 005307 355 AVNRRYISDCVPLKLRMRASAG-FVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISF 431 (703)
Q Consensus 355 ~~~~~~i~~~~~~~~R~~~~~~-~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l 431 (703)
+....++.+.+|++.|+...+. ++....+|.++||.++|++ ..|| +.+|++.+++.++..++.++.+
T Consensus 334 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~----------~~~f~~~~~~~~i~~~~~~~~~ 403 (420)
T PRK09528 334 VGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGF----------QGTYLILGGIVLLFTLISVFTL 403 (420)
T ss_pred HHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCc----------hHHHHHHHHHHHHHHHHHHHHh
Confidence 6677889999999999887665 6778899999999999999 5687 8999998888877776666666
Q ss_pred cCCCc
Q 005307 432 REPPL 436 (703)
Q Consensus 432 ~e~~~ 436 (703)
++++.
T Consensus 404 ~~~~~ 408 (420)
T PRK09528 404 SGDRE 408 (420)
T ss_pred cCCch
Confidence 65544
No 141
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.31 E-value=4.7e-11 Score=127.18 Aligned_cols=154 Identities=18% Similarity=0.136 Sum_probs=123.2
Q ss_pred hhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHH
Q 005307 265 YVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLI 343 (703)
Q Consensus 265 ~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i 343 (703)
......+|.+.++.|.++.+.+++.+...++.+++.++.|+++||+|||+.+.++.+.. ++.++..+. ++.+.+++
T Consensus 237 ~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 313 (406)
T PRK11551 237 YFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAA---PSFAGMLL 313 (406)
T ss_pred HHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc---CcHHHHHH
Confidence 33344568888889999999999999999999999999999999999999888765544 555566666 77777777
Q ss_pred HHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cc-cccccccccccchhHHHHHHHH
Q 005307 344 GRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QT-NFKIYKLTFNEDTLPGWVMALL 419 (703)
Q Consensus 344 ~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~-g~~~~~~~~~~~~~~f~i~~~~ 419 (703)
.-++.|++.+. +...+++.|.+|+++|++++|+.+....+|..+||.++|.+ .. ++ |...+++..++
T Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~---------~~~~~~~~~~~ 384 (406)
T PRK11551 314 AGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRS---------TVGVIGASIPV 384 (406)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCc---------hHHHHHHHHHH
Confidence 88888887654 77888999999999999999999999999999999999998 33 32 25666666666
Q ss_pred HHHHHHHHHHh
Q 005307 420 WLVYLLWLWIS 430 (703)
Q Consensus 420 ~~~~~i~~~~~ 430 (703)
.++.+++.+..
T Consensus 385 ~~~~~~~~~~~ 395 (406)
T PRK11551 385 ILVAALAALLL 395 (406)
T ss_pred HHHHHHHHHHH
Confidence 65555554443
No 142
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.30 E-value=1.8e-10 Score=121.75 Aligned_cols=175 Identities=14% Similarity=0.076 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHH
Q 005307 252 LNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYA 330 (703)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~ 330 (703)
.+.+..++...++......+|.+..++|.+..+.|++.+.+.++.+++.++.|+++||+|||+.+.++..+. ++.++..
T Consensus 209 ~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~ 288 (393)
T PRK09705 209 TLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFI 288 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 333444444555555556678888889999999999999999999999999999999999999888776544 5555444
Q ss_pred hhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccC-ChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccc
Q 005307 331 MAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCV-PLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLT 405 (703)
Q Consensus 331 ~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~-~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~ 405 (703)
... ++...+. -++.|++.+. +.......+.. |+++|++.+|+.+....++..+||.+.|++ ..|.
T Consensus 289 ~~~--~~~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~------ 358 (393)
T PRK09705 289 WLP--LQLPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN------ 358 (393)
T ss_pred Hcc--chHHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------
Confidence 331 3322222 2455777665 66666666766 467899999999999999999999999999 4553
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 005307 406 FNEDTLPGWVMALLWLVYLLWLWISFREPPLETK 439 (703)
Q Consensus 406 ~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~ 439 (703)
|...|++..+.+++.+++.+.+.||++....
T Consensus 359 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 359 ---YLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred ---chHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 3788888887777777776777788765443
No 143
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.29 E-value=1.2e-10 Score=124.49 Aligned_cols=157 Identities=11% Similarity=0.069 Sum_probs=129.5
Q ss_pred hccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH-HHHHHHHHhhcccchhHHHHHH
Q 005307 267 IVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL-LVGNTLYAMAYDLNSIAVLLIG 344 (703)
Q Consensus 267 ~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~-~~~~~~~~~a~~~~~~~~l~i~ 344 (703)
....+|.+.++ +|.++.+.|++.+...++.+++.++.|++.||.++++.+..+.++ .++.++..+. ++.+.++++
T Consensus 242 ~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~ 318 (417)
T PRK10489 242 VRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM---PMWILAVLC 318 (417)
T ss_pred HHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc---chHHHHHHH
Confidence 34556888887 899999999999999999999999999999998877777776554 4777777777 888888888
Q ss_pred HHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHHHH
Q 005307 345 RLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALLW 420 (703)
Q Consensus 345 r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~ 420 (703)
.++.|++.+. +...+++.+..|++.||+++|++.....+|..+||.++|++ .+|. +..+++.+++.
T Consensus 319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~----------~~~~~~~~~~~ 388 (417)
T PRK10489 319 LALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTP----------VASASASGFGL 388 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhch----------hhHHHHHHHHH
Confidence 8999998776 56678899999999999999999999999999999999999 5675 67777777766
Q ss_pred HHHHHHHHHhccCCCc
Q 005307 421 LVYLLWLWISFREPPL 436 (703)
Q Consensus 421 ~~~~i~~~~~l~e~~~ 436 (703)
++..++.+..+|+.+.
T Consensus 389 ~~~~~~~~~~~~~~~~ 404 (417)
T PRK10489 389 LIIGVLLLLVLGELRR 404 (417)
T ss_pred HHHHHHHHHhcccccc
Confidence 6666666666676554
No 144
>PRK03545 putative arabinose transporter; Provisional
Probab=99.28 E-value=1.7e-10 Score=122.11 Aligned_cols=152 Identities=23% Similarity=0.250 Sum_probs=120.5
Q ss_pred cchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHHHHH-HHHHhhcccchhHHHHHHHH
Q 005307 269 PTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLLVGN-TLYAMAYDLNSIAVLLIGRL 346 (703)
Q Consensus 269 ~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~-~~~~~a~~~~~~~~l~i~r~ 346 (703)
..++.+..+ +|.++.+.+++.++..++.+++.++.|+++||+|||.+++...+..++. ++.... ++.+.++++.+
T Consensus 226 ~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~ 302 (390)
T PRK03545 226 SYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIAIALLLVCLLLLLPAA---NSEWHLSVLSI 302 (390)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHh---chHHHHHHHHH
Confidence 344555444 7899999999999999999999999999999999887654444443333 333455 77888888899
Q ss_pred HHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHHHHHH
Q 005307 347 FCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALLWLV 422 (703)
Q Consensus 347 l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~~~ 422 (703)
+.|++.+. +...+.+.+..| ++|++++|+++....+|..+||+++|++ .+|+ +..|++.+++.++
T Consensus 303 l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~----------~~~~~~~~~~~~~ 371 (390)
T PRK03545 303 FWGIAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGL----------SSIGYVGAALALA 371 (390)
T ss_pred HHHHHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh----------hHHHHHHHHHHHH
Confidence 99998655 666677778766 6889999999999999999999999998 7787 8999999988888
Q ss_pred HHHHHHHhccCC
Q 005307 423 YLLWLWISFREP 434 (703)
Q Consensus 423 ~~i~~~~~l~e~ 434 (703)
++++.+...+..
T Consensus 372 ~~~~~~~~~~~~ 383 (390)
T PRK03545 372 ALVWSILIFRRF 383 (390)
T ss_pred HHHHHHHHcccc
Confidence 887777666543
No 145
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.27 E-value=1.4e-10 Score=122.05 Aligned_cols=147 Identities=16% Similarity=0.174 Sum_probs=118.5
Q ss_pred ccchhHHH-HhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHH
Q 005307 268 VPTADNYS-LSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGR 345 (703)
Q Consensus 268 ~~~l~~~~-~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r 345 (703)
...+|.+. +++|.++.+.|++.+...+...++.++.|+++||+|||+++.++.+.. ++.+...+. ++.+.+++.+
T Consensus 219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 295 (375)
T TIGR00899 219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD---NSLWALLMLQ 295 (375)
T ss_pred HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 34456555 568999999999988888888889999999999999999887775544 555555566 7888888899
Q ss_pred HHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHHHHH
Q 005307 346 LFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALLWL 421 (703)
Q Consensus 346 ~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~~ 421 (703)
++.|++.|. +....++.|..|+ ++++++++++....+|..+||.++|.+ ..|| +..|++.+++.+
T Consensus 296 ~~~g~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~----------~~~~~~~~~~~~ 364 (375)
T TIGR00899 296 LLNAIFIGILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSY----------HAVYWFAIVMLI 364 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------hhHHHHHHHHHH
Confidence 999998776 7777888898875 567999999999999999999999988 5676 889988888777
Q ss_pred HHHHHHH
Q 005307 422 VYLLWLW 428 (703)
Q Consensus 422 ~~~i~~~ 428 (703)
+..++..
T Consensus 365 ~~~~~~~ 371 (375)
T TIGR00899 365 VALFCLL 371 (375)
T ss_pred HHHHHHh
Confidence 7665543
No 146
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.25 E-value=1.1e-10 Score=127.18 Aligned_cols=179 Identities=12% Similarity=0.007 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHH
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGN 326 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~ 326 (703)
+.++..++..+.............|.+.+++|.+....++..+...++.+++.+++|+++||+|||+.+.++++.. ++.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~ 363 (481)
T TIGR00879 284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICL 363 (481)
T ss_pred HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3344444444444444444555678888889999988899999999999999999999999999999888775543 555
Q ss_pred HHHHhh--cccc------hhHHHHHHHH-HHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-
Q 005307 327 TLYAMA--YDLN------SIAVLLIGRL-FCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF- 395 (703)
Q Consensus 327 ~~~~~a--~~~~------~~~~l~i~r~-l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l- 395 (703)
++.++. ...+ +...+.+..+ ..+.+.+. +....++.|.+|+++|++++++.+....+|.+++|.+.+.+
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~ 443 (481)
T TIGR00879 364 FVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML 443 (481)
T ss_pred HHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554421 0001 2333333333 33344444 67778889999999999999999999999999999999887
Q ss_pred -cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCc
Q 005307 396 -QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPL 436 (703)
Q Consensus 396 -~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~ 436 (703)
..+| +++|++.++++++.+++.+++.||++.
T Consensus 444 ~~~~~----------~~~f~~~~~~~~~~~i~~~~~~~~~~~ 475 (481)
T TIGR00879 444 ESIGV----------GGVFIFFGGLNVLGLIFVYFFLPETKG 475 (481)
T ss_pred HhcCc----------cceehhHHHHHHHHHHHHheecccCCC
Confidence 5677 888898888888887777776777653
No 147
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.25 E-value=3.1e-10 Score=119.66 Aligned_cols=150 Identities=13% Similarity=0.143 Sum_probs=116.2
Q ss_pred HhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHH
Q 005307 262 VNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAV 340 (703)
Q Consensus 262 ~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~ 340 (703)
.........+|.+.++.|.++...|++.+...++.++++++.|+++||+|+|+++..+.+.. ++.+... . ...
T Consensus 214 ~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~-----~~~ 287 (381)
T PRK03633 214 IVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-S-----QAA 287 (381)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-h-----hHH
Confidence 33344445578888888999999999999999999999999999999999999888775544 4433322 1 123
Q ss_pred HHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHH
Q 005307 341 LLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVM 416 (703)
Q Consensus 341 l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~ 416 (703)
.+...++.|++.+. |...+++.|..|+++++.+.+.+..+.++|.++||.++|++ ..|+ ++.|++.
T Consensus 288 ~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~----------~~~f~~~ 357 (381)
T PRK03633 288 MAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSD----------NLLFIMI 357 (381)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------cHHHHHH
Confidence 34456677776554 88888899999998888888888889999999999999999 6676 8888888
Q ss_pred HHHHHHHHHHH
Q 005307 417 ALLWLVYLLWL 427 (703)
Q Consensus 417 ~~~~~~~~i~~ 427 (703)
+.+.++..+..
T Consensus 358 ~~~~l~~~~~~ 368 (381)
T PRK03633 358 ASVSFIYLLML 368 (381)
T ss_pred HHHHHHHHHHH
Confidence 77776555433
No 148
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.25 E-value=5.6e-11 Score=127.96 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhcccc--CchhHHHHH--HHHH-H
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRS--YLKPLVFSS--IVLL-V 324 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~--Grr~~l~~~--~~~~-~ 324 (703)
++...+..++..++.......+|.+.+++|.+..+.+++.++..++.+++.++.|+++||. ++|+...++ ++.. +
T Consensus 243 ~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l 322 (455)
T TIGR00892 243 FLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGL 322 (455)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHH
Confidence 4444455555555555555667888888999999999999999999999999999999984 334333332 3322 4
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cc-cc
Q 005307 325 GNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QT-NF 399 (703)
Q Consensus 325 ~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~-g~ 399 (703)
+.+++.++ ++++.+++.+++.|++.+. +...+++.|.+|++++++++|+++....+|.++||.++|.+ .. +|
T Consensus 323 ~~ll~~~~---~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~ 399 (455)
T TIGR00892 323 THLLCALA---GDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNY 399 (455)
T ss_pred HHHHHHHh---chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCc
Confidence 45556667 8899999999999999877 77888999999999999999999999999999999999988 44 35
Q ss_pred cccccccccchhHHHHHHHHHHHHHH
Q 005307 400 KIYKLTFNEDTLPGWVMALLWLVYLL 425 (703)
Q Consensus 400 ~~~~~~~~~~~~~f~i~~~~~~~~~i 425 (703)
++.|++.+++.+++.+
T Consensus 400 ----------~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 400 ----------KYIFYASGSIVVSAGL 415 (455)
T ss_pred ----------chHHHHhhHHHHHHHH
Confidence 8888888877665544
No 149
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.22 E-value=2.5e-10 Score=123.73 Aligned_cols=178 Identities=13% Similarity=0.030 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHH-hcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH-HHHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYSL-SLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL-LVGN 326 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~-~~~~ 326 (703)
.++.+.+..++...........+|.|.+ ++|.+..+.++..++..++..++.+++|+++||+|||+.+++.... .++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~ 338 (467)
T PRK09556 259 VIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIF 338 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4455555555555555445566787775 5899999999999999999999999999999999988876655332 2222
Q ss_pred --HHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHH-HHHHHHHhhhhh-c--c-
Q 005307 327 --TLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASAL-GMACGPALACLF-Q--T- 397 (703)
Q Consensus 327 --~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~-G~~lgp~i~~~l-~--~- 397 (703)
++.... ++.+.+++.+++.|++... ......+.|.+|++.||.+.|+.+....+ |..++|.+.|++ . +
T Consensus 339 ~~~~~~~~---~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~ 415 (467)
T PRK09556 339 TLGVYQHA---TSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKN 415 (467)
T ss_pred HHHHHHhc---CcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhccccc
Confidence 222233 5677777888888865433 33346777999999999999999988886 779999999998 5 1
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHH
Q 005307 398 NFKIYKLTFNEDTLPGWVMALLWLVYLLWLWI 429 (703)
Q Consensus 398 g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~ 429 (703)
|+...+....+|+..|++..++.+++++..++
T Consensus 416 g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 447 (467)
T PRK09556 416 GTPIFGYTLTGWAGTFAALDIAAIGCICLMAI 447 (467)
T ss_pred ccccccccccChHHHHHHHHHHHHHHHHHHHH
Confidence 11110111345799999887777776555443
No 150
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.22 E-value=3.7e-10 Score=119.91 Aligned_cols=168 Identities=17% Similarity=0.070 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHH-HHHH-HHHHHHH
Q 005307 251 LLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVF-SSIV-LLVGNTL 328 (703)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~-~~~~-~~~~~~~ 328 (703)
+...+..++............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+ ..++.+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~ 304 (402)
T TIGR00897 225 LLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLA 304 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 3334444444455555556678888889999999999999999999999999999999999887653 3322 2233333
Q ss_pred HHhhc--ccchhHHHHHHHHHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccc
Q 005307 329 YAMAY--DLNSIAVLLIGRLFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYK 403 (703)
Q Consensus 329 ~~~a~--~~~~~~~l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~ 403 (703)
+.+.. ..++.+.+++..++.|++.+. ......+.|.. +++|++++|+.+....+|..+||.+++.+ .+|+
T Consensus 305 l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~---- 379 (402)
T TIGR00897 305 LYYIPQHFGHSFAVALIIAIALGIFLAGYVPLAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGA---- 379 (402)
T ss_pred HHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----
Confidence 32210 114677777888888888766 33445666754 46899999999999999999999999988 6676
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHH
Q 005307 404 LTFNEDTLPGWVMALLWLVYLLWLWI 429 (703)
Q Consensus 404 ~~~~~~~~~f~i~~~~~~~~~i~~~~ 429 (703)
+.++++.+++.++..++.++
T Consensus 380 ------~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 380 ------IGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred ------HHHHHHHHHHHHHHHHHHHH
Confidence 88889888887776655544
No 151
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.21 E-value=3.8e-10 Score=119.66 Aligned_cols=172 Identities=18% Similarity=0.115 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchh--HHHHHHHHH-
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKP--LVFSSIVLL- 323 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~--~l~~~~~~~- 323 (703)
+.++..++..++............|.+..+ +|.++.+.+++.+...++..++.+++|+++||+|||+ .........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 294 (399)
T TIGR00893 215 RRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAII 294 (399)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHH
Confidence 345555666666666666666777877654 7889999999999999999999999999999999886 222111111
Q ss_pred --HHHHHHHhhc-ccchhHHHHHHHHHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cc
Q 005307 324 --VGNTLYAMAY-DLNSIAVLLIGRLFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QT 397 (703)
Q Consensus 324 --~~~~~~~~a~-~~~~~~~l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~ 397 (703)
+...+..+.. ..++.+..+...++.+++.+. +...++++|.+|+++|++++|+.+....+|..+||.+.|.+ ..
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~ 374 (399)
T TIGR00893 295 AGLVLSLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT 374 (399)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC
Confidence 1111111110 013455555555555555556 88999999999999999999999999999999999999998 55
Q ss_pred c-ccccccccccchhHHHHHHHHHHHHHHHHHH
Q 005307 398 N-FKIYKLTFNEDTLPGWVMALLWLVYLLWLWI 429 (703)
Q Consensus 398 g-~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~ 429 (703)
| | +..|++.+++.++..+..++
T Consensus 375 g~~----------~~~~~~~~~~~~~~~~~~~~ 397 (399)
T TIGR00893 375 GSF----------AGALMVVAALALIGALSYLL 397 (399)
T ss_pred Cch----------hHHHHHHHHHHHHHHHHHHH
Confidence 6 5 78888888777766655443
No 152
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.20 E-value=4.6e-10 Score=123.05 Aligned_cols=145 Identities=12% Similarity=0.038 Sum_probs=109.6
Q ss_pred hccchhHHHH-hcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHH
Q 005307 267 IVPTADNYSL-SLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIG 344 (703)
Q Consensus 267 ~~~~l~~~~~-~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~ 344 (703)
....+|.+.+ ++|.+..+.|++.+...++.+++.+++|+++||+|||++++.+.+.. ++.++.... ...+.+.+.+.
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 372 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI-GGANVWVLGLL 372 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc-cccHHHHHHHH
Confidence 3456788884 78999999999999999999999999999999999999888775433 443333322 11344445455
Q ss_pred HHHHhh-cCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHHHH
Q 005307 345 RLFCGL-GSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALLW 420 (703)
Q Consensus 345 r~l~Gi-~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~ 420 (703)
.++.|+ +.+. +...+++.|.+|+++|++++|+......+|..+||+++|.+ .+|| +..+++.+...
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~----------~~~~~~~~~~~ 442 (496)
T PRK03893 373 LFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDL----------GTALASLSFSL 442 (496)
T ss_pred HHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCCh----------HHHHHHHHHHH
Confidence 554443 3444 67778899999999999999999999999999999999998 6676 66766555444
Q ss_pred HH
Q 005307 421 LV 422 (703)
Q Consensus 421 ~~ 422 (703)
.+
T Consensus 443 ~~ 444 (496)
T PRK03893 443 TF 444 (496)
T ss_pred HH
Confidence 33
No 153
>PRK03699 putative transporter; Provisional
Probab=99.20 E-value=3e-10 Score=120.23 Aligned_cols=166 Identities=13% Similarity=0.095 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHhhhhhccchhHHHH-hcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADNYSL-SLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNT 327 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~ 327 (703)
++.+.++.++...........+|.+.+ .+|.++.+.+++.+.+.++..++.++.|+++||+|||+++....... ++..
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~ 286 (394)
T PRK03699 207 VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMY 286 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Confidence 344444555555555555566788885 57999999999999999999999999999999999998887665443 5555
Q ss_pred HHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccc
Q 005307 328 LYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYK 403 (703)
Q Consensus 328 ~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~ 403 (703)
+.... ++.+.+.+..++.|++.+. +...++..+..| ++++...+....+..+|..+||.+.|++ ..|+
T Consensus 287 ~~~~~---~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~---- 358 (394)
T PRK03699 287 LFVNT---DDPSHLLYAILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGL---- 358 (394)
T ss_pred HHHHc---CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCc----
Confidence 55566 6777777777888887665 666667777665 4467788888888999999999999998 6676
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHH
Q 005307 404 LTFNEDTLPGWVMALLWLVYLLWLWI 429 (703)
Q Consensus 404 ~~~~~~~~~f~i~~~~~~~~~i~~~~ 429 (703)
+..+++.+++.+++++.+..
T Consensus 359 ------~~~~~~~~~~~~~~~~~~~~ 378 (394)
T PRK03699 359 ------QAALLTANGLYAVVFVMCIL 378 (394)
T ss_pred ------hhhhhhhHHHHHHHHHHHHH
Confidence 88888888777777655443
No 154
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=99.17 E-value=1.4e-09 Score=109.21 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccc----cCchhHHH-HHHH-
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNR----SYLKPLVF-SSIV- 321 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr----~Grr~~l~-~~~~- 321 (703)
+.++.+....+-..+++..-....+++..++|++..+.+.+-.+..+..++.+|+.|..+|| ||||+-++ .+.+
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 45555555666666777777788899999999999999999999999999999999999997 89766444 4444
Q ss_pred HHHHHHHHHhhccc-----c---------hhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhh-HHHHHHHHHHHH
Q 005307 322 LLVGNTLYAMAYDL-----N---------SIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMR-ASAGFVSASALG 384 (703)
Q Consensus 322 ~~~~~~~~~~a~~~-----~---------~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~-~~~~~~~~~~~G 384 (703)
..++.++..++... + ....++++-.+.-++.-. ..+.++++|...++++.+ +++++....++|
T Consensus 112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG 191 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG 191 (498)
T ss_pred HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence 33777777776110 1 122333344444444433 789999999987777666 999999999999
Q ss_pred HHHHHHhhhhh
Q 005307 385 MACGPALACLF 395 (703)
Q Consensus 385 ~~lgp~i~~~l 395 (703)
.++|..+|+++
T Consensus 192 nvLGY~~g~y~ 202 (498)
T KOG0637|consen 192 NVLGYALGSYL 202 (498)
T ss_pred ceeeeeccccc
Confidence 99999998866
No 155
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.14 E-value=1.7e-09 Score=114.08 Aligned_cols=160 Identities=19% Similarity=0.111 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHH
Q 005307 251 LLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLY 329 (703)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~ 329 (703)
+...+..++............|.+.++.|.+..+.|++.++..++..+..++.|++.||+|+|+++..+.+.. ++.++.
T Consensus 208 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~ 287 (382)
T PRK11128 208 WRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLM 287 (382)
T ss_pred HHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444555667788889999999999999999999999999999999999999988886654 777777
Q ss_pred HhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHH-HHHHHHHHHHHHhhhhh--ccccccccc
Q 005307 330 AMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFV-SASALGMACGPALACLF--QTNFKIYKL 404 (703)
Q Consensus 330 ~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~-~~~~~G~~lgp~i~~~l--~~g~~~~~~ 404 (703)
+++ ++.+.+++..++.|++.+. +....++.+. +++++++..+.+. ...++|..+||.++|.+ .+|+
T Consensus 288 ~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~----- 358 (382)
T PRK11128 288 GST---TALPWLIVIQILHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA----- 358 (382)
T ss_pred Hhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-----
Confidence 778 8999999999999999886 7777788776 5667788898876 55788889999999999 5563
Q ss_pred ccccchhHHHHHHHHHHHHHH
Q 005307 405 TFNEDTLPGWVMALLWLVYLL 425 (703)
Q Consensus 405 ~~~~~~~~f~i~~~~~~~~~i 425 (703)
..++..+++.+++++
T Consensus 359 ------~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 359 ------GVFWVMALVALPALF 373 (382)
T ss_pred ------HHHHHHHHHHHHHHH
Confidence 455666655554443
No 156
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.13 E-value=4.6e-10 Score=118.97 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHhhhhhccchhHHH-HhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHH-HHHH-HHH
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADNYS-LSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSS-IVLL-VGN 326 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~-~~~~-~~~ 326 (703)
++...+..++...........+|.+. +++|.+..+.+++.+...++..++.+++|+++||+|||+.+..+ .+.. ++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~ 300 (394)
T TIGR00883 221 FLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAV 300 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 34444445555555555566678777 56899999999999999999999999999999999999877644 3333 221
Q ss_pred H-HHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHH-HHHHHHHHHHHHHHhhhhh--ccc-c
Q 005307 327 T-LYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAG-FVSASALGMACGPALACLF--QTN-F 399 (703)
Q Consensus 327 ~-~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~-~~~~~~~G~~lgp~i~~~l--~~g-~ 399 (703)
. +..+. ..++.+.+++..++.|++.+. +...+++.|.+|+++|++++++ .+.+..+|..++|.++|++ ..| |
T Consensus 301 ~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~ 379 (394)
T TIGR00883 301 PLLMALL-DSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDW 379 (394)
T ss_pred HHHHHHh-cCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcc
Confidence 2 22221 114677777788888888765 7888999999999999999997 4566778999999999998 556 5
No 157
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.12 E-value=1.8e-09 Score=115.88 Aligned_cols=173 Identities=12% Similarity=-0.022 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHhhhhhccchhHHH-HhcCccchhhhHHHHHHHHHHHHHhhhhhhhcccc--C-chhHHHHHHH-HHH
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADNYS-LSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRS--Y-LKPLVFSSIV-LLV 324 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~--G-rr~~l~~~~~-~~~ 324 (703)
++.+.++.++...........+|.+. +++|.+..+.++..+++.++..++.+++|+++||+ + |++......+ ..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~ 324 (434)
T PRK11663 245 IWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILL 324 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHH
Confidence 34444444444444445555677787 45799999999999999999999999999999998 3 3333222211 111
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccccc
Q 005307 325 GNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFK 400 (703)
Q Consensus 325 ~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~ 400 (703)
+.+...... ..+...+.+..+..|++... .....+++|..|+++|+.++|+.+....+|..+||.+.|++ ..||
T Consensus 325 ~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~- 402 (434)
T PRK11663 325 SVGSLWLMP-FASYVMQAACFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHW- 402 (434)
T ss_pred HHHHHHHcc-cccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhccc-
Confidence 111111110 13444444444445554332 33456678999999999999999999999999999999988 6777
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHhccC
Q 005307 401 IYKLTFNEDTLPGWVMALLWLVYLLWLWISFRE 433 (703)
Q Consensus 401 ~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e 433 (703)
+..|++.+++.++..+..+...++
T Consensus 403 ---------~~~f~~~~~~~~~~~~~~~~~~~~ 426 (434)
T PRK11663 403 ---------TGFFVVISIAAGISALLLLPFLNA 426 (434)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 889998888887776665554443
No 158
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.11 E-value=2.4e-09 Score=115.33 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=129.4
Q ss_pred HHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhccc
Q 005307 258 FLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDL 335 (703)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~ 335 (703)
++..+..+.+...+|.+.++ +|.++...|++.+++.+|.++|+++.+++.+++++++++..+.+.. ++.+..+++
T Consensus 228 ~~~~l~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~--- 304 (524)
T PF05977_consen 228 FLFNLFASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS--- 304 (524)
T ss_pred HHHHHhhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc---
Confidence 33344444444567888765 8999999999999999999999999999999999888877776654 888888999
Q ss_pred chhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchh
Q 005307 336 NSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTL 411 (703)
Q Consensus 336 ~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~ 411 (703)
++.+..+++-++.|++... +...+.+.+.+|++.|||+++++.+....|..+|.++.|.+ .+|. +.
T Consensus 305 ~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~----------~~ 374 (524)
T PF05977_consen 305 PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGV----------RT 374 (524)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH----------HH
Confidence 9999999999999998776 67778888999999999999999999999999999999999 6776 67
Q ss_pred HHHHHHHHHHHHHHHH
Q 005307 412 PGWVMALLWLVYLLWL 427 (703)
Q Consensus 412 ~f~i~~~~~~~~~i~~ 427 (703)
.+.+.++..++..++.
T Consensus 375 al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 375 ALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776665554444433
No 159
>PRK09952 shikimate transporter; Provisional
Probab=99.10 E-value=3.5e-09 Score=113.63 Aligned_cols=167 Identities=13% Similarity=0.094 Sum_probs=113.4
Q ss_pred HHHHhhhhhccchhHHH-HhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhc-cc
Q 005307 259 LYMVNTYVIVPTADNYS-LSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAY-DL 335 (703)
Q Consensus 259 ~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~-~~ 335 (703)
+............|.+. +.+|.+......+..+..+..+++.+++|+++||+|||++++.+.+.. ++.+.+.... ..
T Consensus 261 ~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~ 340 (438)
T PRK09952 261 CELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQ 340 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344444445566665 457888776666666677778889999999999999999888775533 3333222211 11
Q ss_pred chhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHH-HHHHHHHHHHHHhhhhh-c-ccccccccccccch
Q 005307 336 NSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFV-SASALGMACGPALACLF-Q-TNFKIYKLTFNEDT 410 (703)
Q Consensus 336 ~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~-~~~~~G~~lgp~i~~~l-~-~g~~~~~~~~~~~~ 410 (703)
++.+.+++..++.|++.+. +...++++|.+|.+.|+.+.++.. .+..+|..++|.+.+++ . .+. .|+
T Consensus 341 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~--------~~~ 412 (438)
T PRK09952 341 SIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGG--------SWH 412 (438)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC--------Cch
Confidence 3445555566777777665 678899999999999998888754 44568999999999988 3 321 137
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCC
Q 005307 411 LPGWVMALLWLVYLLWLWISFREP 434 (703)
Q Consensus 411 ~~f~i~~~~~~~~~i~~~~~l~e~ 434 (703)
.++...+++.++.++..+ .++|+
T Consensus 413 ~~~~~~~~~~~i~~v~~~-~~~~~ 435 (438)
T PRK09952 413 SVAIYLLAGCLISAMTAL-LMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHHH-Hcccc
Confidence 888877777776665544 45654
No 160
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.10 E-value=2.3e-09 Score=116.97 Aligned_cols=163 Identities=17% Similarity=0.127 Sum_probs=116.6
Q ss_pred hhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchh-HHH
Q 005307 264 TYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSI-AVL 341 (703)
Q Consensus 264 ~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~-~~l 341 (703)
........|.+..++|.+....++......++.+++.+++|+++||+|||++++.+.++. ++.++++.....+.. ...
T Consensus 287 ~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~ 366 (479)
T PRK10077 287 INVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVA 366 (479)
T ss_pred hhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHH
Confidence 333444567788888988777777878888899999999999999999999998886644 665555433111111 122
Q ss_pred HHHHHHHhhc--Ccc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--------cccccccccccccch
Q 005307 342 LIGRLFCGLG--SAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--------QTNFKIYKLTFNEDT 410 (703)
Q Consensus 342 ~i~r~l~Gi~--~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--------~~g~~~~~~~~~~~~ 410 (703)
+++-++.+++ .+. +...++++|.+|+++|+.++|+......+|.++++.+.+.+ ..+| +
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~----------~ 436 (479)
T PRK10077 367 LLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHN----------G 436 (479)
T ss_pred HHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccC----------c
Confidence 2233333333 333 77889999999999999999999999988888886555433 3444 7
Q ss_pred hHHHHHHHHHHHHHHHHHHhccCCCc
Q 005307 411 LPGWVMALLWLVYLLWLWISFREPPL 436 (703)
Q Consensus 411 ~~f~i~~~~~~~~~i~~~~~l~e~~~ 436 (703)
+.|++.++++++.+++.+++.||++.
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~e~~~ 462 (479)
T PRK10077 437 FSYWIYGCMGVLAALFMWKFVPETKG 462 (479)
T ss_pred cHHHHHHHHHHHHHHHHHhccccCCC
Confidence 88888888877777777777787654
No 161
>PRK10054 putative transporter; Provisional
Probab=99.09 E-value=9.5e-10 Score=116.22 Aligned_cols=148 Identities=12% Similarity=0.050 Sum_probs=117.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 005307 512 TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVC 591 (703)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~ 591 (703)
++.++.+.+..++..++......++|.|+.+.+|++..++|+..++..++..+++.+.| +++||+|+|+.+.++.++.+
T Consensus 6 ~~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G-~l~Dr~g~k~~~~~~~~~~~ 84 (395)
T PRK10054 6 RRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFG-ILADKFDKKRYMLLAITAFA 84 (395)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCcchhHHHHHHHHH
Confidence 44567777778888888888888999999988999999999999999899988888888 99999999999988887777
Q ss_pred HHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 592 IGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 592 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
++.++.... .+.+..++...+.+.+.+...+...++..+..|++ +|+++.|..+. ..++|.++||.+++
T Consensus 85 ~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~--~~~lg~~igp~l~~ 153 (395)
T PRK10054 85 SGFIAIPLV---NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSST-SKTKIFSLNYT--MLNIGWTVGPPLGT 153 (395)
T ss_pred HHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHh-HHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 775544333 33444444445555565666777888999999888 88988888744 77899999999766
No 162
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.09 E-value=1.7e-09 Score=115.97 Aligned_cols=132 Identities=11% Similarity=0.065 Sum_probs=98.0
Q ss_pred hccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHH
Q 005307 267 IVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGR 345 (703)
Q Consensus 267 ~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r 345 (703)
+...+|.+.++.|.++...+.+.+...++..++.+++|+++||+|||+++..+.+.. ++.++..... .++...+.+..
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 328 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIP-QDNYLLLGACL 328 (426)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc-cccHHHHHHHH
Confidence 344578888888999999999999999999999999999999999999888776544 4443333331 12222222222
Q ss_pred HHHhhcC-cc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccc
Q 005307 346 LFCGLGS-AR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNF 399 (703)
Q Consensus 346 ~l~Gi~~-g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~ 399 (703)
+..+++. +. +....++.|.+|++.|++++|+......+|..+||.++|++ .+|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~ 386 (426)
T PRK12307 329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGL 386 (426)
T ss_pred HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccH
Confidence 2222222 33 56667889999999999999999999999999999999999 5664
No 163
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=99.09 E-value=6.2e-08 Score=100.69 Aligned_cols=363 Identities=13% Similarity=0.106 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHHhcC-ccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH----
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYSLSLG-AAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL---- 323 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~---- 323 (703)
....++...++...+.-+.....|.+..+.. .+--..+...-+-.+..+++++..|.+.||..|.+++..+++.-
T Consensus 3 ~~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv 82 (432)
T PF06963_consen 3 ALWRLYLSHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSV 82 (432)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHH
Confidence 3456778888888888888888888888863 34444555555666778889999999999999998877664421
Q ss_pred -HHHHHHH--hhcccc---hhHH---HHHHHHHHhhcCcc-hhhhHHh--hcc----C--ChhhhhhHHHHHHHHHHHHH
Q 005307 324 -VGNTLYA--MAYDLN---SIAV---LLIGRLFCGLGSAR-AVNRRYI--SDC----V--PLKLRMRASAGFVSASALGM 385 (703)
Q Consensus 324 -~~~~~~~--~a~~~~---~~~~---l~i~r~l~Gi~~g~-~~~~~~i--~~~----~--~~~~R~~~~~~~~~~~~~G~ 385 (703)
+++.+.. +..... +-+. +++.-.+.|.-.-. ..+.... -|| . ++..+.+.++.+.-.--+.-
T Consensus 83 ~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ck 162 (432)
T PF06963_consen 83 AASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCK 162 (432)
T ss_pred HHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHH
Confidence 2222222 221111 1122 22222222221111 2222222 223 3 45667888888888888999
Q ss_pred HHHHHhhhhh--cccccccccccccchhHHHHHHHHHHHHHHHHHHhccC----CCccccccccccccccccccccccCC
Q 005307 386 ACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFRE----PPLETKENLVPQEANAGLLINCTVDN 459 (703)
Q Consensus 386 ~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e----~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (703)
++||++.|.+ ..+. ....++.++..++.+++=++++.. .|.-..+++ .++.
T Consensus 163 llaPl~vG~l~t~~s~----------~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~-~~~~------------ 219 (432)
T PF06963_consen 163 LLAPLFVGLLMTFASP----------VIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKR-SSES------------ 219 (432)
T ss_pred HHHHHHHHHHhhccCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCC-Cccc------------
Confidence 9999999999 4665 666666666666666554444322 221111100 0000
Q ss_pred CCCCcccccchhcccCCccccccCCCCCCCCccccccc-------CCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHH
Q 005307 460 GSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKIT-------HRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEIL 532 (703)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (703)
+..++. ............. ......|+..+ +.+++...+...+.++..-.+
T Consensus 220 ----------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~---~q~vflas~alalLY~TVLsf 277 (432)
T PF06963_consen 220 ----------------ESSSDE---ESSSESSSDPSILKRLWNPLRTIIRGWRTYF---RQPVFLASFALALLYFTVLSF 277 (432)
T ss_pred ----------------cccccc---cccccccchhhHHHHHHHHHHHHhccHHHHH---hCHHHHHHHHHHHHHHHHhcC
Confidence 000000 0000000000000 00011222222 444555555555555555556
Q ss_pred HhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhh----ccccccc---cc
Q 005307 533 LAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILL----SFHILVP---YS 605 (703)
Q Consensus 533 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~----~~~~~~~---~~ 605 (703)
...+..|+... |+++..+|.+-++..+.++.+.++.. ++.+|+|..+.-++++..-.+++.+ .+....+ .+
T Consensus 278 ~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~~p-~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s 355 (432)
T PF06963_consen 278 GGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWVYP-WLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSIS 355 (432)
T ss_pred cHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhH
Confidence 66667788776 99999999999998888888888777 9999999988777776544433321 1222111 12
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhc
Q 005307 606 VPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIA 661 (703)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~g 661 (703)
...++.+.++.=+|.=..--...-++++.+|++ +||+..|+-++ ..++...+.
T Consensus 356 ~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~-~Rg~v~gvq~s--l~~lf~ll~ 408 (432)
T PF06963_consen 356 AYLLLGGIALSRIGLWSFDLAVTQIMQENVPES-ERGAVSGVQNS--LQSLFELLS 408 (432)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHH-HhhHHHHHHHH--HHHHHHHHH
Confidence 223333333333444344556677889999998 99998888644 444444443
No 164
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.08 E-value=6.4e-09 Score=105.32 Aligned_cols=171 Identities=20% Similarity=0.261 Sum_probs=128.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhccchhHHHH-hcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHH-HHH
Q 005307 247 FTSLLLNLVNTFLYMVNTYVIVPTADNYSL-SLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIV-LLV 324 (703)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~-~~~ 324 (703)
.+.++..++..++...+.......+.++.+ ..|.+.+.++++.-++.++.++|+++.|+++|| +.|+.+..... ..+
T Consensus 210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~ 288 (394)
T COG2814 210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLAL 288 (394)
T ss_pred CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHH
Confidence 445566666666666665555555555554 578999999999999999999999999999999 87777776644 444
Q ss_pred HHHH-HHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccc
Q 005307 325 GNTL-YAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNF 399 (703)
Q Consensus 325 ~~~~-~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~ 399 (703)
..+. ..+. ++.+..++.-++.|++.+. ......+++ .-|+.+..+.+++..++++|..+|..+||.+ ++|+
T Consensus 289 ~~l~l~~~~---~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~ 364 (394)
T COG2814 289 ALLALTFTG---ASPALALALLFLWGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGY 364 (394)
T ss_pred HHHHHHHhc---chHHHHHHHHHHHHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence 4443 3444 6666777777776666554 444444555 4478899999999999999999999999999 7676
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHhcc
Q 005307 400 KIYKLTFNEDTLPGWVMALLWLVYLLWLWISFR 432 (703)
Q Consensus 400 ~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~ 432 (703)
..+.|+.+++.++++++.+...+
T Consensus 365 ----------~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 365 ----------AATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999988888877665443
No 165
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.08 E-value=3e-09 Score=114.74 Aligned_cols=170 Identities=11% Similarity=-0.041 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhcccc--CchhHHHH-HHH-HH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRS--YLKPLVFS-SIV-LL 323 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~--Grr~~l~~-~~~-~~ 323 (703)
.++...+..++...........+|.+.++ .|.+..+.+++.+++.++.+++.+++|+++||+ |||....+ ... ..
T Consensus 254 ~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~ 333 (452)
T PRK11273 254 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT 333 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 34444555555444444555678888876 688989999999999999999999999999998 55543322 222 22
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHH-HHHHhhhhh--ccc
Q 005307 324 VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMA-CGPALACLF--QTN 398 (703)
Q Consensus 324 ~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~-lgp~i~~~l--~~g 398 (703)
++.++..+. ...+.+.++++.++.|.+... .....++.|.+|++.||+++|+.+....+|.. +||.++|.+ ..|
T Consensus 334 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g 412 (452)
T PRK11273 334 IATIVYWLN-PAGNPTVDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG 412 (452)
T ss_pred HHHHHHHHh-cccChHHHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc
Confidence 333322222 013455555555555554322 33445678999999999999999988888765 589998888 667
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHH
Q 005307 399 FKIYKLTFNEDTLPGWVMALLWLVYLLWLWI 429 (703)
Q Consensus 399 ~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~ 429 (703)
| +..|++.+++++++++....
T Consensus 413 ~----------~~~f~~~~~~~~~~~~~~~~ 433 (452)
T PRK11273 413 W----------DGGFMVMIGGSILAVILLIV 433 (452)
T ss_pred c----------hHHHHHHHHHHHHHHHHHHH
Confidence 7 89998888877777655554
No 166
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=99.07 E-value=1.4e-09 Score=111.14 Aligned_cols=181 Identities=10% Similarity=0.016 Sum_probs=121.8
Q ss_pred HHHHHHhh-CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHH
Q 005307 504 IMSAYRLL-TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQV 582 (703)
Q Consensus 504 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~ 582 (703)
+.+..++. ++....+++..++..++.....+++--++++ +|-.+..-|..-.+.-.+.++.-++.+ ++.+|+|+-++
T Consensus 361 ~a~~~~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled-~~~~~~LfGv~~a~~~~gEI~~~ffs~-klI~kiGHv~v 438 (618)
T KOG3762|consen 361 LADVGKVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLED-LGGIKTLFGVVSALCHAGEILFYFFSF-KLIEKIGHVNV 438 (618)
T ss_pred HHHHHHHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhh-cCCcceeeeehhhhhccchHHHHHHHH-HHHHHhcccce
Confidence 44443333 6676666666666666666666655445544 565556667555554455555556656 99999999999
Q ss_pred HHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhcc
Q 005307 583 LLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIAD 662 (703)
Q Consensus 583 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp 662 (703)
+.+++++.++-++..-.. .++|..+..-++-++..+.++..+.++++...|++ .+.++.|++.. ....+|..+|.
T Consensus 439 ~~lgLa~~~~Rf~~~S~L---~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~-l~at~Q~l~~g-~f~GlG~g~Gs 513 (618)
T KOG3762|consen 439 MYLGLACNVGRFLYYSYL---QNPWMVLPIEILQGITHALIWAAIISYASHVAPPG-LRATAQGLLQG-IFHGLGKGLGS 513 (618)
T ss_pred eeehhhHHHHHHHHHHHh---cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCc-chHHHHHHHHH-HhcccCcchhh
Confidence 999988887775543333 56777788888999999999999999999999999 77777777643 36677888888
Q ss_pred ceee-eeccccCCcccccchhHHHHHHHHHHHHH
Q 005307 663 GTIT-LSGYLGESRLLNVTLLPSLFICISSIVAT 695 (703)
Q Consensus 663 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (703)
++++ +...++... ++-.+.+++++.++..
T Consensus 514 lIGG~~v~~fg~~t----tf~~~giAcl~~l~~~ 543 (618)
T KOG3762|consen 514 LIGGFVVERFGART----TFRIFGIACLVTLALF 543 (618)
T ss_pred hhhhhhheeehhHH----HHHHHHHHHHHHHHHH
Confidence 8777 555555332 3444444444444333
No 167
>TIGR00895 2A0115 benzoate transport.
Probab=99.07 E-value=2.1e-09 Score=114.08 Aligned_cols=141 Identities=17% Similarity=0.150 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHHH-HHHHHH
Q 005307 252 LNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLLV-GNTLYA 330 (703)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~-~~~~~~ 330 (703)
.+++..++...........+|.+..++|.++.+.+++.+...++..++.+++|+++||+|||+++...++..+ +.++..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (398)
T TIGR00895 254 LLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLLGAVFAVLVGS 333 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455555556777888899999999999999999999999999999999999955554444443 333333
Q ss_pred hhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 331 MAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 331 ~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
.. ++.+.+++..++.|++.+. +...+++.|.+|+++|++++|+......+|..+||.++|++
T Consensus 334 ~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 334 TL---FSPTLLLLLGAIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred Hh---hCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 34 6777788888999998776 88889999999999999999999999999999999998864
No 168
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.07 E-value=2.1e-09 Score=114.48 Aligned_cols=130 Identities=15% Similarity=0.179 Sum_probs=103.9
Q ss_pred hhccchhHHHH-hcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HH-HHHHHhhcccchhHHHH
Q 005307 266 VIVPTADNYSL-SLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VG-NTLYAMAYDLNSIAVLL 342 (703)
Q Consensus 266 ~~~~~l~~~~~-~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~-~~~~~~a~~~~~~~~l~ 342 (703)
.....+|.+.. ++|.+..+.+++.+...++.+++.++.|+++||+|||+.+.++.+.. +. ..+.... ++.+.+.
T Consensus 256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 332 (405)
T TIGR00891 256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG---ANVAVLG 332 (405)
T ss_pred hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC---CchHHHH
Confidence 33345566654 58999999999999999999999999999999999999888775533 22 2233334 5677777
Q ss_pred HHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccc
Q 005307 343 IGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTN 398 (703)
Q Consensus 343 i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g 398 (703)
++.++.|++.+. +...+++.|.+|+++|++++|+.+....+|..+||+++|++ ..|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 333 LGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred HHHHHHHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 776777665443 77888999999999999999999999999999999999999 556
No 169
>PRK10504 putative transporter; Provisional
Probab=99.07 E-value=4e-09 Score=114.71 Aligned_cols=147 Identities=14% Similarity=0.134 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGN 326 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~ 326 (703)
.+.......++............|.+.+. +|.++.+.+++.....++..++.+++|+++||+|||+++..+.++. ++.
T Consensus 262 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~ 341 (471)
T PRK10504 262 TFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVS 341 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 34444555555555666665667877764 8999999999999999999999999999999999999988776643 555
Q ss_pred HHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 327 TLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 327 ~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
++..+....++.+.+.+.-++.|++.+. +....++.+..|++.++.++++.+....+|..+||.++|.+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~l 412 (471)
T PRK10504 342 LLFMLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLL 412 (471)
T ss_pred HHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555432223445555667777887766 67778888999999999999999999999999999999987
No 170
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.05 E-value=8.7e-09 Score=107.71 Aligned_cols=182 Identities=12% Similarity=0.043 Sum_probs=125.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH-HH
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL-LV 324 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~-~~ 324 (703)
++.....+.+.......+...+......+..+-|++..+.-++.....+...++++++..+.||+|||++++++..+ .+
T Consensus 268 R~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~ 347 (485)
T KOG0569|consen 268 RRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAV 347 (485)
T ss_pred hHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 34333333333333333444454555667777899999999999999999999999999999999999999988653 35
Q ss_pred HHHHHHhhcccchhH------HHHHHHHHH--hhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 325 GNTLYAMAYDLNSIA------VLLIGRLFC--GLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 325 ~~~~~~~a~~~~~~~------~l~i~r~l~--Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
..+++..+....+.. ..+++.++. +++.|. |+..-+.+|++|++.|+.++++..+..-++..+-...--.+
T Consensus 348 ~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l 427 (485)
T KOG0569|consen 348 ALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPL 427 (485)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444331111111 123444443 444565 88999999999999999999988877666665544433333
Q ss_pred --cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccc
Q 005307 396 --QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLET 438 (703)
Q Consensus 396 --~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~ 438 (703)
.+| ...|.+..+.+++.++..++.+||++.+.
T Consensus 428 ~~~~g-----------~~~filF~i~~~~~~i~~~~~lPETkgr~ 461 (485)
T KOG0569|consen 428 QNVIG-----------PYVFILFVIPLAIFLIYLYRYLPETKGRT 461 (485)
T ss_pred HHHhc-----------chhhHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 455 46677888888888889999999998543
No 171
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.05 E-value=2.7e-09 Score=111.80 Aligned_cols=124 Identities=15% Similarity=0.181 Sum_probs=109.4
Q ss_pred cchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccc-hhHHHHHHH
Q 005307 269 PTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLN-SIAVLLIGR 345 (703)
Q Consensus 269 ~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~-~~~~l~i~r 345 (703)
...|.+..+ +|.++.+.|++.+...++.+++.++.|++.||+|||+++..+.+.. ++.++..+. + +++.++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 308 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT---PPNFPLFLVLW 308 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh---chhHHHHHHHH
Confidence 566777776 8999999999999999999999999999999999999888775544 666666666 5 488888999
Q ss_pred HHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 346 LFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 346 ~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
++.|++.+. +...+++.|.+|+++|++++|+.+....+|..+||.++|++
T Consensus 309 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l 360 (365)
T TIGR00900 309 FAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPL 360 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999877 78889999999999999999999999999999999999987
No 172
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.03 E-value=9.4e-09 Score=109.54 Aligned_cols=178 Identities=19% Similarity=0.190 Sum_probs=139.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhccchhHHHH-hcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCch--hHHHHHHHHH
Q 005307 247 FTSLLLNLVNTFLYMVNTYVIVPTADNYSL-SLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLK--PLVFSSIVLL 323 (703)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr--~~l~~~~~~~ 323 (703)
.+.+...+++.++..-+.+.+......|.. ++|.+..+...+.-+..+..++|++++|++.||+|.| ++++++++..
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~ 359 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW 359 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 345566666777766666666666666766 6999999999999999999999999999999999988 7877776544
Q ss_pred -HHHHHHHh--h---cccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 324 -VGNTLYAM--A---YDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 324 -~~~~~~~~--a---~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
+..+.-.+ . ...++.+.+++.-++.|++.|. +...++.+++.|+++.+..+|++....-....+||++-|.+
T Consensus 360 ~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i 439 (477)
T PF11700_consen 360 IIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLI 439 (477)
T ss_pred HHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222 0 0126788899999999999887 99999999999999999999999999999999999999998
Q ss_pred --cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCC
Q 005307 396 --QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREP 434 (703)
Q Consensus 396 --~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~ 434 (703)
..|- .|+.++...++.++.+++.+ .++.+
T Consensus 440 ~~~tg~---------~r~g~~~l~~lf~~gl~ll~-~v~~~ 470 (477)
T PF11700_consen 440 TDATGS---------QRYGFLFLLVLFLIGLILLF-FVDVE 470 (477)
T ss_pred HHHhCC---------chhHHHHHHHHHHHHHHHHh-hccch
Confidence 4442 28888888887777776654 35444
No 173
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=2.2e-07 Score=96.43 Aligned_cols=301 Identities=12% Similarity=0.068 Sum_probs=179.0
Q ss_pred HHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccC
Q 005307 289 IGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCV 365 (703)
Q Consensus 289 ~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~ 365 (703)
.++......++.++.+.+.|..|.|+.++++..+. ...+.+.+ +|-+.++++-.+.|+|.+. ..-..|+++..
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~----~N~y~~yfssallG~Gaallw~GqG~ylt~~s 131 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF----PNSYYLYFSSALLGFGAALLWTGQGGYLTSNS 131 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh----cchHHHHHHHHHhhhhHHheecccceehhhcC
Confidence 67777888899999999999999999999998877 44444444 6888999999999999998 88888999999
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccccccch--------hHHHHHHHHHHHH---HHHHHHhccC
Q 005307 366 PLKLRMRASAGFVSASALGMACGPALACLF-QTNFKIYKLTFNEDT--------LPGWVMALLWLVY---LLWLWISFRE 433 (703)
Q Consensus 366 ~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~~~~~~~~--------~~f~i~~~~~~~~---~i~~~~~l~e 433 (703)
+++.+.+..++.-.....+.++|.++-..+ .+.-. .+.....++ ..+.+..+..++. .+.+......
T Consensus 132 t~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~ 210 (461)
T KOG3098|consen 132 TRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSS-SAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFL 210 (461)
T ss_pred ChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEeccc-ccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeec
Confidence 999999999998888888888886665555 21110 000011111 0111111111111 1111111111
Q ss_pred CCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhh-C
Q 005307 434 PPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLL-T 512 (703)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 512 (703)
+...... . .+ . .+......++...+.. +
T Consensus 211 p~~~~~~------------------------------------~------------~~-~--~~~~~~~~l~~~~~l~~~ 239 (461)
T KOG3098|consen 211 PSKDVVN------------------------------------C------------KS-S--SETSFSELLKLTFKLLKT 239 (461)
T ss_pred Cccchhh------------------------------------h------------hh-h--ccccHHHHHHHHHHHhcC
Confidence 1100000 0 00 0 0011122334444443 7
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHhhh--hccccchh-HHHHHHhhhhhhhhHHHHHHhhhhhh---hhhHHHHHHH
Q 005307 513 PSVKVQLFVYFMLKYAMEILLAESSVITEH--YFIWSTSR-VAIFLACLGLTVLPVNIIVGNYISNI---FEERQVLLAS 586 (703)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~s~~~-~g~~~~~~~~~~~~~~~~~~~~l~~r---~g~r~~~~~~ 586 (703)
++++.+....+..++........+|..+.- ..+.+... .++.....+++.++++..++ .+.+| +|++..+.++
T Consensus 240 ~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~-~l~~rir~fg~~~~~~~~ 318 (461)
T KOG3098|consen 240 PKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFS-ILSKRIRGFGRKPTVLIG 318 (461)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHH-HHhhhhhhcccCcchhHH
Confidence 777777666666666666666666654332 23333322 24444555666666666655 55544 6777777777
Q ss_pred HHHHHHHHhhcccccc---------------ccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhh
Q 005307 587 EIIVCIGILLSFHILV---------------PYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGL 648 (703)
Q Consensus 587 ~~~~~i~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 648 (703)
..+..+++++.....+ ........+..++.|++-.+.....+..+...+|++ +.++.++.
T Consensus 319 ~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~~~--~~~~fsi~ 393 (461)
T KOG3098|consen 319 IIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYPDD--RAQAFSLF 393 (461)
T ss_pred HHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc--hHHHHHHH
Confidence 7666666554322110 112345666677778888899999999999999766 54444443
No 174
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.03 E-value=3.3e-09 Score=114.58 Aligned_cols=147 Identities=8% Similarity=0.035 Sum_probs=118.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHhhhh--ccccchhHHHHHHhhhhhhhhHHHHHHhhhhhh-hhhHHHHHHHHHHH
Q 005307 514 SVKVQLFVYFMLKYAMEILLAESSVITEHY--FIWSTSRVAIFLACLGLTVLPVNIIVGNYISNI-FEERQVLLASEIIV 590 (703)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r-~g~r~~~~~~~~~~ 590 (703)
.++.++...++..+++++...++|.|+.+. +|++..++|...+...++..++..+.| +++|| +|+|+++.++.++.
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G-~laDr~~G~~~~l~~~~~~~ 89 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGW-WFGDRVWGTKKTMVLGGIVL 89 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHH-HHHHhhcchHHHHHHHHHHH
Confidence 455566667777888888999999999887 899999999999999999988888877 99999 89999999999988
Q ss_pred HHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--cccccchhhhHHhhhhhhhhhccceee
Q 005307 591 CIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRL--SRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 591 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+++.+++... .+.+.+.++.++.+++.+...+...+++++.+|++. +|+++.+.. ....++|.++||.+++
T Consensus 90 ~~g~~~~~~~---~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~--~~~~niG~~ig~~l~g 162 (475)
T TIGR00924 90 MLGHFMLAMS---IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLF--YMSINIGSFISPLLAG 162 (475)
T ss_pred HHHHHHHHhc---ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhH--HHHHHHHHHHHHHHHH
Confidence 8886654333 334555666677788888888888899999998752 377778877 3477899999999655
No 175
>PRK15075 citrate-proton symporter; Provisional
Probab=99.01 E-value=9e-09 Score=110.47 Aligned_cols=142 Identities=17% Similarity=0.123 Sum_probs=99.0
Q ss_pred HHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H-HHHHHHhhcc
Q 005307 258 FLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-V-GNTLYAMAYD 334 (703)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~-~~~~~~~a~~ 334 (703)
++............|.+.++ +|.+..+.+++...+.++..++.+++|+++||+|||++++.+.+.. + +.....+...
T Consensus 248 ~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 327 (434)
T PRK15075 248 AMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVA 327 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444455555667888776 7999999999999999999999999999999999999877664322 2 2111111111
Q ss_pred cchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHH-HHHHHHHHHHHhhhhh--cccc
Q 005307 335 LNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVS-ASALGMACGPALACLF--QTNF 399 (703)
Q Consensus 335 ~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~-~~~~G~~lgp~i~~~l--~~g~ 399 (703)
.+++..+.+..++.|++.+. +....++.|.+|++.|+.++++... +..++..++|.+.+++ ..|+
T Consensus 328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~ 397 (434)
T PRK15075 328 APSFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGD 397 (434)
T ss_pred CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 14444454555555666555 5566789999999999999998644 4445577899999888 5564
No 176
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.01 E-value=4.6e-09 Score=111.64 Aligned_cols=150 Identities=11% Similarity=0.079 Sum_probs=112.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhh-hhHHHHHHHHHHH
Q 005307 512 TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIF-EERQVLLASEIIV 590 (703)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~-g~r~~~~~~~~~~ 590 (703)
.+.++.++...+...++++++..++|.|+.+.+|+++.+++.+++...+...++.++.| +++||+ |||+.+.++.++.
T Consensus 8 p~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG-~LaDRilGrrr~iliG~il~ 86 (493)
T PRK15462 8 PRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGG-FLADKVLGNRMAVMLGALLM 86 (493)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHccCcHHHHHHHHHHH
Confidence 34566667777778888899999999999988999999999998888877777776656 999999 9999999999888
Q ss_pred HHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCC-cccccchhhhHHhhhhhhhhhccceee
Q 005307 591 CIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRL-SRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 591 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+++.+++... ........++..+..++.+...+...+++++.+|++. +|++..+.... ..++|..++|.+.+
T Consensus 87 ~lg~lll~~~--~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~--~~nlG~~iap~l~g 159 (493)
T PRK15462 87 AIGHVVLGAS--EIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYA--AGNVGSIIAPIACG 159 (493)
T ss_pred HHHHHHHHHh--hcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHH--HHHHHHHHHHHHHH
Confidence 8886543221 1111223334444456666666777889999998752 57777888744 67799999999555
No 177
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.01 E-value=7.5e-09 Score=109.53 Aligned_cols=162 Identities=14% Similarity=-0.021 Sum_probs=114.6
Q ss_pred HHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHH-HHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHH-
Q 005307 254 LVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMA-VAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYA- 330 (703)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~-l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~- 330 (703)
....++............+.+..+.|.++.++|++.++.. +...++.+++|++.||+|+|+++..+.+.. +..+...
T Consensus 214 ~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~ 293 (390)
T TIGR02718 214 LALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFA 293 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445667888889999999999988876 466778999999999999999887765433 2222221
Q ss_pred hhc--ccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCCh-hhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccc
Q 005307 331 MAY--DLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPL-KLRMRASAGFVSASALGMACGPALACLF--QTNFKIYK 403 (703)
Q Consensus 331 ~a~--~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~-~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~ 403 (703)
... ..++.+.++...++.+++.|. +...+.+.+..++ +.+++.+++.+...++|..+||.++|.+ ..|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~---- 369 (390)
T TIGR02718 294 QAAFWLAPGIAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGY---- 369 (390)
T ss_pred HHHcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----
Confidence 110 013444455555666666555 5666666666665 8899999999999999999999999999 5676
Q ss_pred cccccchhHHHHHHHHHHHHHH
Q 005307 404 LTFNEDTLPGWVMALLWLVYLL 425 (703)
Q Consensus 404 ~~~~~~~~~f~i~~~~~~~~~i 425 (703)
+..|++.+++.+++++
T Consensus 370 ------~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 370 ------AGGFLSGTVLAVLAIL 385 (390)
T ss_pred ------HHHHHHHHHHHHHHHH
Confidence 7888887776665543
No 178
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.00 E-value=3.8e-09 Score=111.89 Aligned_cols=144 Identities=13% Similarity=0.131 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHh
Q 005307 516 KVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGIL 595 (703)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~ 595 (703)
+.++...++..++.+....+++.|+++.+|+++.++|+..++..+...+.+.+.| +++||+|+|+.+..+..+.+++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G-~l~dr~g~k~~l~~~~~~~~~~~~ 91 (400)
T PRK11646 13 YFLLIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGG-AIADRFGAKPMIVTGMLMRAAGFA 91 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhh-HHHHHhCchHHHHHHHHHHHHHHH
Confidence 4555677777788888888889999888999999999999998888888888877 999999999999999888888866
Q ss_pred hccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 596 LSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+.... .+.+.+.+..++.+++.+...+...+++.+..|++ ++|++.|.. .....+|..+||.+++
T Consensus 92 ~~~~~---~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~--~~~~~~g~~ig~~l~g 156 (400)
T PRK11646 92 TMAIA---HEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPH-QRGRFFSLL--MMQDSAGAVIGALLGS 156 (400)
T ss_pred HHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 54333 45666677777778888778888889999999988 899999988 4478899999999666
No 179
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.99 E-value=6e-09 Score=110.49 Aligned_cols=147 Identities=15% Similarity=0.093 Sum_probs=117.8
Q ss_pred chhHHHHhc----CccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHH
Q 005307 270 TADNYSLSL----GAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIG 344 (703)
Q Consensus 270 ~l~~~~~~~----g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~ 344 (703)
..+.+..+. +.+....|++.++..+...++.++.|++.||+|||++++++.++. ++..+..++ ++.+.+++.
T Consensus 237 ~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~---~~~~~~~~~ 313 (396)
T TIGR00882 237 QFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA---TTALEVVIL 313 (396)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc---CChHHHHHH
Confidence 355565553 455667899999999999999999999999999999888876644 666666777 899999999
Q ss_pred HHHHhhcCcc--hhhhHHhhccCChhhhhhHHHH-HHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHHH
Q 005307 345 RLFCGLGSAR--AVNRRYISDCVPLKLRMRASAG-FVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALL 419 (703)
Q Consensus 345 r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~-~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~ 419 (703)
+++.|++.+. .....++.+..+++.++...+. ++....+|..+||.++|++ .+|+ +.+|.+.+++
T Consensus 314 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~----------~~~f~~~~~~ 383 (396)
T TIGR00882 314 KMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGF----------QGAYLVLGCI 383 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhccc----------HHHHHHHHHH
Confidence 9999988766 5566677888888888777765 6788999999999999999 5686 8999998888
Q ss_pred HHHHHHHHHH
Q 005307 420 WLVYLLWLWI 429 (703)
Q Consensus 420 ~~~~~i~~~~ 429 (703)
.++..++..+
T Consensus 384 ~~i~~~~~~~ 393 (396)
T TIGR00882 384 VLLFTLISVF 393 (396)
T ss_pred HHHHHHHHHH
Confidence 8777665544
No 180
>TIGR00898 2A0119 cation transport protein.
Probab=98.98 E-value=7.7e-09 Score=113.59 Aligned_cols=146 Identities=13% Similarity=0.035 Sum_probs=106.7
Q ss_pred HHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchh--HHHHHHHHHHh
Q 005307 273 NYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSI--AVLLIGRLFCG 349 (703)
Q Consensus 273 ~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~--~~l~i~r~l~G 349 (703)
.+...++.+.. +......+..+++.++.++++||+|||+++.++.+.. ++.++..+. ++. +..++.-++.+
T Consensus 348 ~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~ 421 (505)
T TIGR00898 348 LDLGNLGGNIY---LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFV---PVDLYFLRTALAVLGK 421 (505)
T ss_pred ccccccCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHc---CCCchHHHHHHHHHHH
Confidence 33444555433 3334455677788899999999999999998886654 666666665 332 44455555556
Q ss_pred hcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccccccchhHHHHHHHHHHHHHHH
Q 005307 350 LGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKIYKLTFNEDTLPGWVMALLWLVYLLW 426 (703)
Q Consensus 350 i~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~ 426 (703)
++.+. +...++.+|.+|++.|+.++|+.++...+|.+++|.+.+ + ..++ ..++++.+++.++..++
T Consensus 422 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~----------~~~~~~~~~~~~~~~~~ 490 (505)
T TIGR00898 422 FGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWL----------FLPLVLFGGLALLAGIL 490 (505)
T ss_pred HHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHH----------hhHHHHHHHHHHHHHHH
Confidence 55444 778889999999999999999999999999999999999 6 5554 67778877777766655
Q ss_pred HHHhccCCCc
Q 005307 427 LWISFREPPL 436 (703)
Q Consensus 427 ~~~~l~e~~~ 436 (703)
. +++||+..
T Consensus 491 ~-~~lpet~~ 499 (505)
T TIGR00898 491 T-LFLPETKG 499 (505)
T ss_pred H-HcCcCCCC
Confidence 4 45788754
No 181
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.98 E-value=6.8e-09 Score=126.07 Aligned_cols=152 Identities=20% Similarity=0.109 Sum_probs=119.3
Q ss_pred HhhhhhccchhHHH-HhcCccch-hhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchh
Q 005307 262 VNTYVIVPTADNYS-LSLGAAAT-LCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSI 338 (703)
Q Consensus 262 ~~~~~~~~~l~~~~-~~~g~s~~-~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~ 338 (703)
.........+|.+. ..+|.+.. ..|++.++..++.+++.+++|+++||+++++++.++.++. ++.++..+. ++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 322 (1146)
T PRK08633 246 FISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA---PSL 322 (1146)
T ss_pred HHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh---hhH
Confidence 33333444556555 45899988 9999999999999999999999999999988877775544 777777777 788
Q ss_pred HHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccccccchhHHHH
Q 005307 339 AVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKIYKLTFNEDTLPGWV 415 (703)
Q Consensus 339 ~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~~~~~~~~~~f~i 415 (703)
+.++++.++.|++.+. +...+++.+.+|++.||+++|+.++...+|.++++.+++.+ ..++. +...|++
T Consensus 323 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~--------~~~~~~~ 394 (1146)
T PRK08633 323 ASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLS--------PAGLFYL 394 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccC--------HHHHHHH
Confidence 8888999999999887 67788999999999999999999999999999999888877 43331 1455555
Q ss_pred HHHHHHHHH
Q 005307 416 MALLWLVYL 424 (703)
Q Consensus 416 ~~~~~~~~~ 424 (703)
.+.+.++..
T Consensus 395 ~~~~~~~~~ 403 (1146)
T PRK08633 395 IALVTLIGT 403 (1146)
T ss_pred HHHHHHHHH
Confidence 555444433
No 182
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.98 E-value=1.5e-08 Score=110.80 Aligned_cols=173 Identities=14% Similarity=-0.025 Sum_probs=105.7
Q ss_pred hhhhhccchhHHHHhcCccchhhhH------------HHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH-HHHHHHH
Q 005307 263 NTYVIVPTADNYSLSLGAAATLCGV------------IIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL-LVGNTLY 329 (703)
Q Consensus 263 ~~~~~~~~l~~~~~~~g~s~~~~g~------------i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~-~~~~~~~ 329 (703)
.++......|.+.++.|.+....+. ...+..++.+++.+++++++||+|||++++++.+. .++.++.
T Consensus 303 ~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l 382 (502)
T TIGR00887 303 AFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVL 382 (502)
T ss_pred HHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Confidence 3333344477888888876543221 23344556677888999999999999998777543 3444444
Q ss_pred Hhhcc-cchhHHHHHHHHHHhh-cCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cc-ccccccc
Q 005307 330 AMAYD-LNSIAVLLIGRLFCGL-GSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QT-NFKIYKL 404 (703)
Q Consensus 330 ~~a~~-~~~~~~l~i~r~l~Gi-~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~-g~~~~~~ 404 (703)
++... .++...+.+.-+...+ +.+. +....+.+|.+|.+.|+++.|+.+....+|.+++|.+.+.+ .. +...+..
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 462 (502)
T TIGR00887 383 GFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYP 462 (502)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccc
Confidence 43310 0111111111111222 2333 66777889999999999999999999999999999998887 42 1000000
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhccCCCc
Q 005307 405 TFNEDTLPGWVMALLWLVYLLWLWISFREPPL 436 (703)
Q Consensus 405 ~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~ 436 (703)
.-.++..+|++.+++.++..+. .+++||++.
T Consensus 463 ~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~ 493 (502)
T TIGR00887 463 TGIWMGHVLEIFALFMFLGILF-TLLIPETKG 493 (502)
T ss_pred ccccchHHHHHHHHHHHHHHHH-heEeccCCC
Confidence 0001256777777777666554 456788765
No 183
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.97 E-value=1e-08 Score=110.27 Aligned_cols=174 Identities=11% Similarity=-0.022 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchh-HHHHHHHH--H-HH
Q 005307 251 LLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKP-LVFSSIVL--L-VG 325 (703)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~-~l~~~~~~--~-~~ 325 (703)
+...+..++...........+|.+.++ .|.++.+.++..+++.++.+++.+++|+++||+|+++ .+...... . ++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~ 333 (438)
T TIGR00712 254 WYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIA 333 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHH
Confidence 333334444444434444567888876 6889999999999999999999999999999996433 33222111 1 22
Q ss_pred HHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHH-HHHHHHhhhhh--ccccc
Q 005307 326 NTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALG-MACGPALACLF--QTNFK 400 (703)
Q Consensus 326 ~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G-~~lgp~i~~~l--~~g~~ 400 (703)
.+++.+. ...+.+...+.-++.|++... ......+.|.+|+++|+.++|+.+....+| .++||.+.|.+ ..||
T Consensus 334 ~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~- 411 (438)
T TIGR00712 334 VIVYWMN-PAGNPLVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW- 411 (438)
T ss_pred HHHHHhc-CCCchHHHHHHHHHHHHHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccc-
Confidence 2222221 112444444445555654333 333456789999999999999998887776 57899999998 5676
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHhccCCC
Q 005307 401 IYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPP 435 (703)
Q Consensus 401 ~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~ 435 (703)
...|++..++.+++++..++.+||.+
T Consensus 412 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 412 ---------DGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88888888888888878888888765
No 184
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.97 E-value=7.4e-09 Score=111.53 Aligned_cols=147 Identities=17% Similarity=0.198 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHH
Q 005307 251 LLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTL 328 (703)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~ 328 (703)
+.+++..++............+.+.+. ++ ++...+++.++..++.+++.+++|+++||+|||+++.++.++. ++.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~ 303 (437)
T TIGR00792 225 LILCLAYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLI 303 (437)
T ss_pred HHHHHHHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 334444444444444443444444443 34 5667788888889999999999999999999999988886654 66665
Q ss_pred HHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCC-------hhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cc
Q 005307 329 YAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVP-------LKLRMRASAGFVSASALGMACGPALACLF--QT 397 (703)
Q Consensus 329 ~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~-------~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~ 397 (703)
..+.. ++.+.+++..++.|++.+. +...++++|..+ ++.+|.++|+.+.+..+|..+|+.+.|++ ..
T Consensus 304 ~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~ 381 (437)
T TIGR00792 304 FFFAG--SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGII 381 (437)
T ss_pred HHHcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55541 4667777888888998776 778888888765 45679999999999999999999999988 56
Q ss_pred ccc
Q 005307 398 NFK 400 (703)
Q Consensus 398 g~~ 400 (703)
|+.
T Consensus 382 G~~ 384 (437)
T TIGR00792 382 GYV 384 (437)
T ss_pred CCC
Confidence 663
No 185
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.96 E-value=7.8e-09 Score=107.70 Aligned_cols=140 Identities=15% Similarity=0.231 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccc
Q 005307 520 FVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFH 599 (703)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~ 599 (703)
+..++..+........+|.++.+.+|+++.+.|+..+...++..++..+.| +++||+|+|+.+..+.++.+++.++...
T Consensus 3 l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 81 (352)
T PF07690_consen 3 LAFFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAG-YLSDRFGRRRVLIIGLLLFALGSLLLAF 81 (352)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHH-HHHHHS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCeeeEeehhhhhhhHHHHhhh
Confidence 445556666666666677677778999999999999999999999999988 9999999999999998888888443332
Q ss_pred cccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 600 ILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
. .+.+.+++..++.|++.+...+...+++.+.+|++ +|++++|.. .....+|..++|.+++
T Consensus 82 ~---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~--~~~~~~g~~~g~~l~~ 142 (352)
T PF07690_consen 82 A---SNFWLLLIARFLLGIGSGFFSPASNALIADWFPPE-ERGRAFGIL--SAGFSLGSILGPLLGG 142 (352)
T ss_dssp H---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTC-CHHHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred h---hhHHHHhhhccccccccccccccccccccccchhh-hhhhccccc--cchhhhhhhcccchhh
Confidence 2 33447888888889999999999999999999997 899999998 4488899999999665
No 186
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.96 E-value=8.8e-08 Score=104.08 Aligned_cols=154 Identities=15% Similarity=0.063 Sum_probs=111.8
Q ss_pred chhHH-HHhcCccchhhhHHHH-HHHHHHHHHhhhhhhhccccCchhHHHHHHH-HHHHHHHHH-hhcccchhHHHHHHH
Q 005307 270 TADNY-SLSLGAAATLCGVIIG-SMAVAQVFSSVYFSAWSNRSYLKPLVFSSIV-LLVGNTLYA-MAYDLNSIAVLLIGR 345 (703)
Q Consensus 270 ~l~~~-~~~~g~s~~~~g~i~s-~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~-~~~~~~~~~-~a~~~~~~~~l~i~r 345 (703)
..+++ .+++|.+..+.|++.+ ...++.+++.+++|+++||+|||+.+.++.+ ..++.+++. ++...++.+.+.+.-
T Consensus 244 ~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~ 323 (491)
T PRK11010 244 LTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAV 323 (491)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34444 4568999999999974 6668999999999999999998887665533 233332222 111114555555566
Q ss_pred HHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHHHHH
Q 005307 346 LFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALLWL 421 (703)
Q Consensus 346 ~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~~ 421 (703)
++..++.|. +...++..+..+++.+++..++.+...++|..+++.++|++ .+|| +..|.+.+++++
T Consensus 324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~----------~~~f~~~~~~~l 393 (491)
T PRK11010 324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGW----------PTFYLFSVAAAV 393 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh----------HHHHHHHHHHHH
Confidence 666655554 56678888899999999999999999999998888888888 6787 888888888887
Q ss_pred HHHHHHHHhccCC
Q 005307 422 VYLLWLWISFREP 434 (703)
Q Consensus 422 ~~~i~~~~~l~e~ 434 (703)
+++++..+ ++++
T Consensus 394 ~~l~~~~~-~~~~ 405 (491)
T PRK11010 394 PGLLLLLV-CRQT 405 (491)
T ss_pred HHHHHHHH-HHhc
Confidence 77666554 4443
No 187
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.96 E-value=2.4e-08 Score=106.34 Aligned_cols=130 Identities=15% Similarity=0.031 Sum_probs=99.5
Q ss_pred cchhHHH-HhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhc--ccchhHHHHHH
Q 005307 269 PTADNYS-LSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAY--DLNSIAVLLIG 344 (703)
Q Consensus 269 ~~l~~~~-~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~--~~~~~~~l~i~ 344 (703)
...|.+. +++|.++.+.|+......++..++.++.|+++||+|+|+.+.++.+.. ++.++..+.. ..++++.++++
T Consensus 236 ~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 315 (406)
T PRK15402 236 ALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAG 315 (406)
T ss_pred HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHH
Confidence 3345554 558999999999888888899999999999999999999888776543 5555555431 11466777888
Q ss_pred HHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccc
Q 005307 345 RLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNF 399 (703)
Q Consensus 345 r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~ 399 (703)
-++.|+|.+. +....... ..++++||++.+.++....+|..+|+.+++.+ ..++
T Consensus 316 ~~~~g~g~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 373 (406)
T PRK15402 316 LSLYAFGIGLANAGLYRLTL-FSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGN 373 (406)
T ss_pred HHHHHHHHHHHhhhHHHHHh-hhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCch
Confidence 8899998876 44444443 34458999999999999999999999999998 4454
No 188
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.95 E-value=1.2e-08 Score=110.93 Aligned_cols=148 Identities=11% Similarity=0.044 Sum_probs=109.1
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhh-hhhHHHHHHHHHHHHH
Q 005307 514 SVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNI-FEERQVLLASEIIVCI 592 (703)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r-~g~r~~~~~~~~~~~i 592 (703)
.++..+...++..++++.+..+++.|+.+.+|++..+++...............+ ++++.|| +|+|+.+..+.++.++
T Consensus 22 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~-~G~LaDr~~G~r~~~~~g~~~~~i 100 (500)
T PRK09584 22 AFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAI-GGWLGDKVLGTKRVIMLGAIVLAI 100 (500)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccchHHHHHHHHHHHHH
Confidence 4777778888888898999999999999999999988877766654443333344 4499999 5999999999888888
Q ss_pred HHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCC-cccccchhhhHHhhhhhhhhhccceee
Q 005307 593 GILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRL-SRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+.+++... ....+.+.++.++.+++.+...+...+++.+.+|++. +++.+.+.. ....++|.++||.+++
T Consensus 101 g~~l~~~~--~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~--~~~~~iG~~~gp~i~g 171 (500)
T PRK09584 101 GYALVAWS--GHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMY--YMSINIGSFFSMLATP 171 (500)
T ss_pred HHHHHHHh--cccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHH--HHHHHHHHHHHHHHHH
Confidence 86544332 1233445556667788888778888899999998652 233456665 3477899999999665
No 189
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=98.94 E-value=1.4e-07 Score=96.10 Aligned_cols=135 Identities=14% Similarity=0.157 Sum_probs=97.0
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhccccC-chhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHh
Q 005307 285 CGVIIGSMAVAQVFSSVYFSAWSNRSY-LKPLVFSSIVLLVGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYI 361 (703)
Q Consensus 285 ~g~i~s~~~l~~~i~~~~~G~l~Dr~G-rr~~l~~~~~~~~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i 361 (703)
.|.+.-+-.+..++.-+.+.++.+|.. +.+++...++..+|.++.+++ ++.+.=+++-++.+++.|. ....++.
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~---~~v~~~l~Gv~las~ssg~GE~tfL~lt 137 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS---PSVWVRLLGVVLASLSSGLGEVTFLSLT 137 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec---cchhHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 344666666777777788888888876 345555555566888899999 9999999999999999887 5555553
Q ss_pred hccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCC
Q 005307 362 SDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPP 435 (703)
Q Consensus 362 ~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~ 435 (703)
..+++ ...+.++.+.+.|.++|+..-..+ ..|+. .|..+.+..+++++.++..++.+|.++
T Consensus 138 -~~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s--------~~~tll~~~~lp~~~~~~~f~~L~~~~ 199 (402)
T PF02487_consen 138 -HFYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLS--------PRTTLLIMLVLPAIFLLSYFFLLPSPP 199 (402)
T ss_pred -HhcCc----cccccccCCcChhhHHHHHHHHHHHHhCcC--------HHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 35553 356778888888888888776666 55553 277888888777766666666666554
No 190
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.94 E-value=4.1e-08 Score=103.79 Aligned_cols=140 Identities=19% Similarity=0.115 Sum_probs=107.9
Q ss_pred hhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHh
Q 005307 271 ADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGRLFCG 349 (703)
Q Consensus 271 l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~G 349 (703)
.|.+.+++|.++...+++.+.+.++..++.++.|++.||.+++..+....+.. ++.++.... ++.+.+.+..++.|
T Consensus 240 ~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~l~G 316 (394)
T PRK10213 240 RPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLWG---SDKIVATGVAIIWG 316 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHH
Confidence 47777888999999999999999999999999999999965544444444433 444555555 67888888889999
Q ss_pred hcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHHHHHHHH
Q 005307 350 LGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALLWLVYL 424 (703)
Q Consensus 350 i~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~~~~~ 424 (703)
++.+. +...+++.+..| ++++++.+.......+|..+||.++|++ ..|+ +..++..+.+.++..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~----------~~~~~~~~~~~~~~~ 384 (394)
T PRK10213 317 LTFALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGL----------TSPLMLSGTLMLLTA 384 (394)
T ss_pred HHHHhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh----------hhHHHHHHHHHHHHH
Confidence 98876 667778888776 5567888888888999999999999999 5665 677777665554443
No 191
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.92 E-value=3.5e-08 Score=105.82 Aligned_cols=163 Identities=12% Similarity=0.057 Sum_probs=102.8
Q ss_pred HHhhhhhccchhHHHH-hcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH-HHHHHHHHh-hcccch
Q 005307 261 MVNTYVIVPTADNYSL-SLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL-LVGNTLYAM-AYDLNS 337 (703)
Q Consensus 261 ~~~~~~~~~~l~~~~~-~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~-~~~~~~~~~-a~~~~~ 337 (703)
..........+|.+.. .+|.+..+.++..++..++..++.++.|+++||+|||++++++.+. .+..+.... ....++
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSS 335 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3344444456777765 4799988999999988888899999999999999999877665432 222221111 100123
Q ss_pred hHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHH-HHHHHHHHhhhhh-cccccccccccccchhHH
Q 005307 338 IAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASA-LGMACGPALACLF-QTNFKIYKLTFNEDTLPG 413 (703)
Q Consensus 338 ~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~-~G~~lgp~i~~~l-~~g~~~~~~~~~~~~~~f 413 (703)
....++.-++.+++.+. +....+++|++|++.|+.++|+.+.... ++....|.+.+++ ..|+ |...+
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~---------~~~~~ 406 (432)
T PRK10406 336 PYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGM---------ETAFF 406 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCC---------CcHHH
Confidence 33222222222233333 5566788999999999999998876544 3344578888877 5564 25566
Q ss_pred HHHHHHHHHHHHHHHHhccC
Q 005307 414 WVMALLWLVYLLWLWISFRE 433 (703)
Q Consensus 414 ~i~~~~~~~~~i~~~~~l~e 433 (703)
+..++..++.++..++ +++
T Consensus 407 ~~~~~~~~i~~~~~~~-l~~ 425 (432)
T PRK10406 407 WYVTLMAVVAFLVSLM-LHR 425 (432)
T ss_pred HHHHHHHHHHHHHHHH-hhh
Confidence 6666666665555443 443
No 192
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=98.91 E-value=3.2e-08 Score=98.99 Aligned_cols=176 Identities=16% Similarity=0.031 Sum_probs=134.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccc-c-CchhHH-HHHHHH
Q 005307 247 FTSLLLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNR-S-YLKPLV-FSSIVL 322 (703)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~-Grr~~l-~~~~~~ 322 (703)
.+.+++++++.++..+....+.-=.|.|..+ .|.|....++..+.+-++.+.|++++|++||+ + |||... ++.++.
T Consensus 251 Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~ 330 (448)
T COG2271 251 NKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLL 330 (448)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 3567778888887777776666667777766 68999999999999999999999999999999 4 666544 444444
Q ss_pred H-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHH-HHHHHHHhhhhh--c
Q 005307 323 L-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASAL-GMACGPALACLF--Q 396 (703)
Q Consensus 323 ~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~-G~~lgp~i~~~l--~ 396 (703)
. ++.+.+.+++ ..|+++..++-++.|+..-. ........|..|++--|.+.|+.+.+..+ |.+++...-|++ .
T Consensus 331 i~~~~~~~w~~~-~~~~~l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~ 409 (448)
T COG2271 331 ITASLVLYWLAP-NGSYLLDAILLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT 409 (448)
T ss_pred HHHHHHHHHcCC-CccHHHHHHHHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec
Confidence 3 6666666661 13568888888888988655 55666778999999999999999998888 777777777777 5
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHhccC
Q 005307 397 TNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFRE 433 (703)
Q Consensus 397 ~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e 433 (703)
+|| ...|.+..+.++++.++.......
T Consensus 410 ~gW----------~g~Fi~~~~~a~l~~lll~~~~~~ 436 (448)
T COG2271 410 WGW----------DGGFIVLSIAALLAILLLLPVWNA 436 (448)
T ss_pred CCC----------cchHHHHHHHHHHHHHHHHHHHhh
Confidence 687 788888777777776665554443
No 193
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.91 E-value=1.5e-08 Score=109.56 Aligned_cols=155 Identities=12% Similarity=0.112 Sum_probs=117.0
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhh-hhhHHHHHHHHHHH
Q 005307 512 TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNI-FEERQVLLASEIIV 590 (703)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r-~g~r~~~~~~~~~~ 590 (703)
.+.++.++...+.-.+++++...+++.|+.+.+|++..+++.+.........+...+ +++++|| +|||++++++.++.
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~-~G~laDr~~G~r~~~~~g~~~~ 91 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISI-GGYVGDHLLGTKRTIVLGAIVL 91 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhh-HHHhhhhccchHHHHHHHHHHH
Confidence 345667777778888999999999999999999999999888777766666555555 4499999 99999999999999
Q ss_pred HHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCC-cccccchhhhHHhhhhhhhhhccceee-ee
Q 005307 591 CIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRL-SRGTYNGGLLSTEAGTLARVIADGTIT-LS 668 (703)
Q Consensus 591 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~ 668 (703)
+++.+++.... .....++++.++.+++.+...|...+++.+.+|++. +++.+.+.. ....++|.++||.+++ +.
T Consensus 92 ~~g~~~~~~~~--~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~--~~~~nig~~~g~~l~g~l~ 167 (489)
T PRK10207 92 AIGYFMTGMSL--LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLF--YMSINIGSLISLSLAPVIA 167 (489)
T ss_pred HHHHHHHHHhc--cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHH--HHHHHHHHHHHHHHHHHHH
Confidence 88876554431 222334456677788888888888999999998873 345567776 4477789989988666 43
Q ss_pred ccc
Q 005307 669 GYL 671 (703)
Q Consensus 669 ~~~ 671 (703)
+..
T Consensus 168 ~~~ 170 (489)
T PRK10207 168 DKF 170 (489)
T ss_pred Hhh
Confidence 433
No 194
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.90 E-value=4.9e-08 Score=91.47 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=97.4
Q ss_pred HHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHH-HHH-HHHHHHHhhcccchhHHHHHHHHHHhh
Q 005307 273 NYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSI-VLL-VGNTLYAMAYDLNSIAVLLIGRLFCGL 350 (703)
Q Consensus 273 ~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~-~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi 350 (703)
.+.+.+|+|+...|.+.+....-.++.+|+.|.++|++|++...+.+. +.+ ++-....|+ ++.=+++..+.|+
T Consensus 290 fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft-----~lsPy~~m~~lGL 364 (459)
T KOG4686|consen 290 FFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT-----FLSPYTSMTFLGL 364 (459)
T ss_pred HHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh-----hccHHHHHHHHhh
Confidence 456779999999999999988999999999999999999998777663 344 665555554 2333456778888
Q ss_pred cCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 351 GSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 351 ~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
+... ......++-++|+++.|.+.|..+...++|..+.|+++|.+
T Consensus 365 sysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i 411 (459)
T KOG4686|consen 365 SYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI 411 (459)
T ss_pred hHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence 8777 33667788889999999999999999999999999999999
No 195
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.89 E-value=3.8e-08 Score=102.70 Aligned_cols=135 Identities=23% Similarity=0.144 Sum_probs=101.0
Q ss_pred HHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccC-chhHHHHHHHHH-HHHHHHHhhcc
Q 005307 257 TFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSY-LKPLVFSSIVLL-VGNTLYAMAYD 334 (703)
Q Consensus 257 ~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~G-rr~~l~~~~~~~-~~~~~~~~a~~ 334 (703)
.++...........+|.+.++.|.+..+.+++.++..++.++++++.|+++||+| ||+.+.++.+.. ++.+++.+.
T Consensus 206 ~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-- 283 (355)
T TIGR00896 206 FGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA-- 283 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh--
Confidence 3333444444455678888889999999999999999999999999999999994 666666665543 666666665
Q ss_pred cchhHHHHHHHHHHhhcCcc--hhhhHHhhccC-ChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 335 LNSIAVLLIGRLFCGLGSAR--AVNRRYISDCV-PLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 335 ~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~-~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
++..... .-++.|++.|. +...+.+.+.. ++++++...++.+....+|..+||.++|++
T Consensus 284 -~~~~~~~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l 345 (355)
T TIGR00896 284 -PMHGLWA-WALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVL 345 (355)
T ss_pred -hhhHHHH-HHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333222 34677888776 66666666544 466778999999988899999999999998
No 196
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.89 E-value=2.1e-08 Score=100.43 Aligned_cols=173 Identities=20% Similarity=0.260 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHH-hcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYSL-SLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGN 326 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~ 326 (703)
.+....++.++..=+...+...-..+.. ++|++..++.++..+..+..++|++++|++.||+|-|+++.++++.. +.+
T Consensus 253 ~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~ 332 (438)
T COG2270 253 NLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAA 332 (438)
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHH
Confidence 3444444555444444444444555666 79999999999999999999999999999999999999999997765 555
Q ss_pred HHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccccccc
Q 005307 327 TLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIY 402 (703)
Q Consensus 327 ~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~ 402 (703)
+...+. ..-..+.++-++.|+..|. +.+.+|.++.+|+++-++.+|+++...-.+..+||.+-+.+ ..|-.
T Consensus 333 ~~~~~~---~~~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~-- 407 (438)
T COG2270 333 LYLIFL---EGELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSS-- 407 (438)
T ss_pred HHHHHc---cccHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcch--
Confidence 555555 4455566667788888776 99999999999999999999999999999999999999988 33321
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHhccCC
Q 005307 403 KLTFNEDTLPGWVMALLWLVYLLWLWISFREP 434 (703)
Q Consensus 403 ~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~ 434 (703)
|..+....++..+.+++. +.+|++
T Consensus 408 -------r~g~~~i~vll~iGl~~L-~~v~~~ 431 (438)
T COG2270 408 -------RAGVLSIIVLLLIGLLLL-LRVKVP 431 (438)
T ss_pred -------hhHHHHHHHHHHhhHhhE-EeecCC
Confidence 666666665555555443 335554
No 197
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.89 E-value=2.5e-08 Score=108.78 Aligned_cols=145 Identities=18% Similarity=0.044 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHH
Q 005307 251 LLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTL 328 (703)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~ 328 (703)
....+..++...........+|.+.+. +|.++.+.|+....+.++..++.++.|++.||+|+|+++..++++. ++.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~ 341 (495)
T PRK14995 262 LSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYG 341 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 333344444444444444556666655 7999999999999999999999999999999999999888776644 56555
Q ss_pred HHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 329 YAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 329 ~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
..+....++.+..++..++.|+|.|. +.....+.+..|+++++.+.++++....+|..+|+.+++.+
T Consensus 342 l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i 410 (495)
T PRK14995 342 LAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLL 410 (495)
T ss_pred HHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54432224666677788999999887 66777788889999999999999999999999999998887
No 198
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.88 E-value=6.2e-08 Score=102.35 Aligned_cols=143 Identities=11% Similarity=0.012 Sum_probs=110.2
Q ss_pred chhHHH-HhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Q 005307 270 TADNYS-LSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLLVGNTLYAMAYDLNSIAVLLIGRLFC 348 (703)
Q Consensus 270 ~l~~~~-~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~a~~~~~~~~l~i~r~l~ 348 (703)
.+|.+. +.+|.++.+.|++.+...++.++++++.+++.||.++++++..+++..+..++.++. ++++.+++.-++.
T Consensus 227 ~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~ 303 (393)
T PRK11195 227 LVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGILMGLVVLLMALQ---HSLLPAYPLLILI 303 (393)
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHH
Confidence 344444 447999999999999999999999999999999999888877775444444455566 7788778888889
Q ss_pred hhcCcc--hhhhHHhhccCChhh-hhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccccccchhHHHHHHHHHHHHH
Q 005307 349 GLGSAR--AVNRRYISDCVPLKL-RMRASAGFVSASALGMACGPALACLF-QTNFKIYKLTFNEDTLPGWVMALLWLVYL 424 (703)
Q Consensus 349 Gi~~g~--~~~~~~i~~~~~~~~-R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~~~~~~~~~~f~i~~~~~~~~~ 424 (703)
|++.+. +...+.+.+..|++. +|++.++.+....+|..+|..+.+.+ ..|- +..+++.+...++.+
T Consensus 304 G~~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 373 (393)
T PRK11195 304 GALGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGV----------PVVAVIVGFGLLVAL 373 (393)
T ss_pred HHhhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCC----------CHHHHHHHHHHHHHH
Confidence 998877 566777777766654 79999999999999999999999988 7775 555555444444443
Q ss_pred H
Q 005307 425 L 425 (703)
Q Consensus 425 i 425 (703)
.
T Consensus 374 ~ 374 (393)
T PRK11195 374 A 374 (393)
T ss_pred H
Confidence 3
No 199
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.88 E-value=3e-08 Score=104.53 Aligned_cols=146 Identities=16% Similarity=0.093 Sum_probs=115.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHH
Q 005307 513 PSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCI 592 (703)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i 592 (703)
+.++......+............+|.+. +.+|++..+.|+..+...++..++..+.| ++.||+|+|+.+..+..+.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~g-~l~dr~g~r~~~~~~~~~~~~ 80 (382)
T PRK10091 3 KVILSLALGTFGLGMAEFGIMGVLTELA-HDVGISIPAAGHMISYYALGVVVGAPIIA-LFSSRYSLKHILLFLVALCVI 80 (382)
T ss_pred chHHHHHHHHHHHHhhHHHHHhChHHHH-HHcCCCHHHHhHHHHHHHHHHHHHHHHHH-HHHccCccHHHHHHHHHHHHH
Confidence 3455666666666666666667676654 55899999999999999999999999988 999999999999999888888
Q ss_pred HHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 593 GILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+.++.... ++.+.+++..++.|++.+...+....++.+..|++ +++.+++.. .....+|..++|.+++
T Consensus 81 ~~~l~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~g~~~g~~l~~ 148 (382)
T PRK10091 81 GNAMFTLS---SSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPG-KVTAAVAGM--VSGMTVANLLGIPLGT 148 (382)
T ss_pred HHHHHHHh---CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChH-HhhHHHHHH--HHHHHHHHHHhccHHH
Confidence 76554333 56777778888889888887888888888998887 788888876 3466788888888554
No 200
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.88 E-value=1.9e-08 Score=107.00 Aligned_cols=130 Identities=8% Similarity=-0.087 Sum_probs=105.3
Q ss_pred HHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhH
Q 005307 529 MEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQ 608 (703)
Q Consensus 529 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 608 (703)
........| .+.+.+|++..+.|+..++..++..++++..+ ++.||+|||+.+..+.++..++.++.... .+.+.
T Consensus 24 ~~~~~~~~~-~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g-~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---~~~~~ 98 (412)
T TIGR02332 24 RINIGFAGL-TMGKDLGLSATMFGLAATLFYAAYVICGIPSN-IMLAIIGARRWIAGIMVLWGIASTATMFA---TGPES 98 (412)
T ss_pred hhhHHHHHH-hhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHH-HHHHHhChHHHHHHHHHHHHHHHHHHHHh---cCHHH
Confidence 333433344 67778999999999999999999999999888 99999999999998888888776654333 45667
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 609 YVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+++.-++.|++.+...+....++.+.+|++ +||++.|..+ ....+|..++|.+++
T Consensus 99 l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~-~rg~~~~~~~--~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 99 LYLLRILVGIAEAGFLPGILLYLTFWFPAY-FRARANALFM--IAMPVTMALGLILSG 153 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCHH-HHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 777788889999888888889999999988 8999999884 467788888888655
No 201
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.86 E-value=3.9e-08 Score=107.48 Aligned_cols=141 Identities=16% Similarity=0.095 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhc
Q 005307 518 QLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLS 597 (703)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~ 597 (703)
+++..++..+.........|.+. +.+|.++.+.++..+...++.+++..+.+ ++.||+|||+.+..+.++..++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~p~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~g~r~~~~~~~~~~~~~~~~~ 84 (485)
T TIGR00711 7 LMLGTFMAVLDSTIVNVAIPTIA-GDLGSSLSQVQWVITSYMLANAISIPLTG-WLAKRFGTRRLFLISTFAFTLGSLLC 84 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HhcCCChhhhhHHHHHHHHHHHHHHHhHH-HHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555554 55899999999999999999999988878 99999999999999988888876655
Q ss_pred cccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 598 FHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
... .+.+.+++..++.|++.+...+...+++.+.+|++ .||++.|.. .....+|..+||.+++
T Consensus 85 ~~~---~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~-~r~~~~~~~--~~~~~~g~~~g~~~~~ 147 (485)
T TIGR00711 85 GVA---PNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPE-KRGRAMAIW--GLTVLVAPALGPTLGG 147 (485)
T ss_pred hCc---CCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHH-HHHHHHHHH--HHHHHHHhhhhhccHh
Confidence 433 46677788888889998888999999999999988 899988887 4477788999998655
No 202
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.86 E-value=2.1e-08 Score=107.48 Aligned_cols=170 Identities=15% Similarity=0.238 Sum_probs=145.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCc--hhHHHHHHHHH-H
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYL--KPLVFSSIVLL-V 324 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Gr--r~~l~~~~~~~-~ 324 (703)
+.++++.+...+..+++.+....+|.+..+.+.+..+.+.+.++..+...++.++.|+++|+... +.+..++++.. +
T Consensus 298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl 377 (509)
T KOG2504|consen 298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGL 377 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHH
Confidence 56677778888888899888899999999999999999999999999999999999999999883 34555666544 8
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccccc
Q 005307 325 GNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFK 400 (703)
Q Consensus 325 ~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~ 400 (703)
+.+.+.++ ++++.++..-++.|++.|. ......+.|+.+.++-..+.|+...+.+++.++||+++|++ ..|-
T Consensus 378 ~~~~~p~~---~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~- 453 (509)
T KOG2504|consen 378 ARLFLPFA---TTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGN- 453 (509)
T ss_pred HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCC-
Confidence 88888899 9999999999999999998 44556889999999999999999999999999999999988 4442
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHH
Q 005307 401 IYKLTFNEDTLPGWVMALLWLVYLLWLWI 429 (703)
Q Consensus 401 ~~~~~~~~~~~~f~i~~~~~~~~~i~~~~ 429 (703)
|...|+..++..+++.++.++
T Consensus 454 --------Y~~~f~~~g~~~~~s~~~~~~ 474 (509)
T KOG2504|consen 454 --------YDHAFYFCGLCFLLSAVLLLI 474 (509)
T ss_pred --------eeeehhhcChHHHHHHHHHHH
Confidence 478888888887777655443
No 203
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.85 E-value=3.3e-08 Score=107.10 Aligned_cols=149 Identities=11% Similarity=0.000 Sum_probs=98.0
Q ss_pred cchhHHH-HhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCch-----h--HHHHHHHHH-HHHHHHHhhcccchhH
Q 005307 269 PTADNYS-LSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLK-----P--LVFSSIVLL-VGNTLYAMAYDLNSIA 339 (703)
Q Consensus 269 ~~l~~~~-~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr-----~--~l~~~~~~~-~~~~~~~~a~~~~~~~ 339 (703)
..+|.+. +++|.+....+++.+++.++..++.+++|+++||+||| + ++.+..++. ++.++.... ++.+
T Consensus 273 ~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~---~~~~ 349 (476)
T PLN00028 273 NIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA---NSLG 349 (476)
T ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc---chHH
Confidence 3456665 45799999999999999999999999999999999865 2 222222222 333333444 5666
Q ss_pred HHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccccccchhHHHHH
Q 005307 340 VLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKIYKLTFNEDTLPGWVM 416 (703)
Q Consensus 340 ~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~~~~~~~~~~f~i~ 416 (703)
..++.-++.|++.+. +...+++.+.. ++.||.+.|+.+.+..+|..++|.+.+.- ..+| +..|++.
T Consensus 350 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y----------~~~f~~~ 418 (476)
T PLN00028 350 AAIVVMILFSIFVQAACGATFGIVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYST----------ETGISLM 418 (476)
T ss_pred HHHHHHHHHHHHHHHhhhhhcccCcccC-hhhchhhhhhhhccccHHHHHHHHHHHhcCCccH----------hhHHHHH
Confidence 655555666665433 44555556654 57899999998776666666666554321 2344 8888888
Q ss_pred HHHHHHHHHHHHHhcc
Q 005307 417 ALLWLVYLLWLWISFR 432 (703)
Q Consensus 417 ~~~~~~~~i~~~~~l~ 432 (703)
+++.+++.++.++ ++
T Consensus 419 ~~~~~i~~~~~~~-~~ 433 (476)
T PLN00028 419 GVMIIACTLPVAF-IH 433 (476)
T ss_pred HHHHHHHHHHHHh-ee
Confidence 8777776655443 44
No 204
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.84 E-value=3.8e-08 Score=119.12 Aligned_cols=166 Identities=14% Similarity=0.044 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHH-HHHHHHH
Q 005307 251 LLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIV-LLVGNTL 328 (703)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~-~~~~~~~ 328 (703)
+.+.+..++..+..+.....+|.|..+ +|.++.+.|++.+++.++.+++.++.|+++++.++++.+..+.+ ..++.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~ 307 (1140)
T PRK06814 228 WLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLD 307 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHH
Confidence 334444444444444444567777766 79999999999999999999999999999998876665444433 2233322
Q ss_pred HHhh-----------------cccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHH
Q 005307 329 YAMA-----------------YDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGP 389 (703)
Q Consensus 329 ~~~a-----------------~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp 389 (703)
+++. ...++.+.++++.++.|++.+. +...+++.+.+|++.||+++|..++...+|..+|+
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~ 387 (1140)
T PRK06814 308 LAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGT 387 (1140)
T ss_pred HHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHH
Confidence 2221 0015677888888999999887 77889999999999999999999999999999999
Q ss_pred Hhhhhh-cccccccccccccchhHHHHHHHHHHHHH
Q 005307 390 ALACLF-QTNFKIYKLTFNEDTLPGWVMALLWLVYL 424 (703)
Q Consensus 390 ~i~~~l-~~g~~~~~~~~~~~~~~f~i~~~~~~~~~ 424 (703)
++++.+ ..++ ++...+++.+++.++..
T Consensus 388 ~~~g~l~~~~~--------~~~~~~~~~~~~~~~~~ 415 (1140)
T PRK06814 388 IILALLQALGF--------SIPWIILFIALANLIVA 415 (1140)
T ss_pred HHHHHHHHhcc--------CHHHHHHHHHHHHHHHH
Confidence 999888 3332 12555555554444333
No 205
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.83 E-value=2.9e-08 Score=104.07 Aligned_cols=144 Identities=16% Similarity=0.112 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 005307 515 VKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGI 594 (703)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~ 594 (703)
++..++..++.......+....|.++.+.+|+++.+.++..++..++..++.++.| +++||+|+|+.+.++.++.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~g~r~~~~~~~~~~~i~~ 81 (366)
T TIGR00886 3 LFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILG-FLVDKFGPRYTTTLSLLLLAIPC 81 (366)
T ss_pred hHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHH-HHHHHhCchHHHHHHHHHHHHHH
Confidence 45556666666666667777777778888999999999999999999999999988 99999999999999988888886
Q ss_pred hhcccccccc-chhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 595 LLSFHILVPY-SVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 595 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
++.... . +.+.+++..++.+++.+. .+...+++.+..|++ +|+.+.+... ....+|..+++.+++
T Consensus 82 ~~~~~~---~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~-~r~~~~~~~~--~~~~~g~~~~~~i~~ 147 (366)
T TIGR00886 82 LWAGLA---VQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKK-IQGTALGLAA--GWGNMGGGVAQFVMP 147 (366)
T ss_pred HHHHHH---hhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHh-hhhHHHHHHH--HHhHHHHHHHHHHHH
Confidence 554333 3 566666777777777544 456678899999988 8998888763 255566666666444
No 206
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.80 E-value=5.3e-08 Score=103.17 Aligned_cols=147 Identities=8% Similarity=0.034 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 005307 515 VKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGI 594 (703)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~ 594 (703)
++.++...++..+.........|. +++.+|++..+.|++.+...++..+++...+ ++.||+|+|+.+..+..+.+++.
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~-~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g-~l~~r~G~r~~~~~g~~l~~~g~ 82 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQ-FQQAFTLTAFQAALVQSAFYGGYFIMAIPAA-IFMKKLSYKAGILLGLFLYALGA 82 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCchHHHHHHHHHHHHHH
Confidence 444455555555555444455554 4677899999999999999999999999988 99999999999999999988886
Q ss_pred hhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 595 LLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
++........+++.+++..++.|++.+...+...+++.+..|++ .+++..+.. .....+|..+||.+++
T Consensus 83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~lG~~~g~~i~~ 151 (410)
T TIGR00885 83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPES-TATRRLNLA--QSFNPFGSIIGMVVAQ 151 (410)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHh-HHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 65433222346777888888889999999998899999988888 778777876 4477899999998665
No 207
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.80 E-value=1.7e-07 Score=98.09 Aligned_cols=182 Identities=23% Similarity=0.260 Sum_probs=136.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHhcC-ccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HH
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLSLG-AAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VG 325 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~ 325 (703)
+.+.+.++..++.....+......+.+.++.| .+....|.+.++..++-++.-...+++..|+|-|+++.++.+.. +=
T Consensus 207 ~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR 286 (400)
T PF03825_consen 207 PRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVR 286 (400)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 34555666777777778888888899999998 67777888888888888899999999999999999999887765 65
Q ss_pred HHHHHhhcccchhHH----HHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHH-HHHHHHHHHHhhhhh--c
Q 005307 326 NTLYAMAYDLNSIAV----LLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSA-SALGMACGPALACLF--Q 396 (703)
Q Consensus 326 ~~~~~~a~~~~~~~~----l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~-~~~G~~lgp~i~~~l--~ 396 (703)
..+++... ++.+. .+++.++.|+..|. .++..|+.+.+|++.|+++.+++... .++|.++|..++|++ .
T Consensus 287 ~~l~a~~~--~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~ 364 (400)
T PF03825_consen 287 WLLYAYFS--DPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDA 364 (400)
T ss_pred HHHHHHhc--CCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 56666541 23333 33445679999887 88999999999999999999988764 789999999999999 4
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCC
Q 005307 397 TNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPP 435 (703)
Q Consensus 397 ~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~ 435 (703)
+|-+ ....|...+.+.+++.++..++.+++++|+.
T Consensus 365 ~g~~----~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 365 FGAR----GMFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred hcch----hhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 4421 1111345556666666666666666666653
No 208
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.80 E-value=7.1e-08 Score=101.49 Aligned_cols=147 Identities=12% Similarity=0.061 Sum_probs=104.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q 005307 512 TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVC 591 (703)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~ 591 (703)
+|.++...+..++.......+....+.+-...+|++..+.+++.++..++..++++..| ++.||+|.|+++.++.++.+
T Consensus 33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G-~l~Dr~G~R~v~~~~~ll~~ 111 (462)
T PRK15034 33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYS-FMVPIFGGRRWTVFSTAILI 111 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCChHHHHHHHHHHH
Confidence 34455554444444444444444444444446999999999999999999999988887 99999999999998888877
Q ss_pred HHHhhcccc--ccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccc
Q 005307 592 IGILLSFHI--LVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADG 663 (703)
Q Consensus 592 i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~ 663 (703)
+..++.... ...++.+.+++..++.|++ +..++.....++..+|++ +||+++|+.. ..+++|..++++
T Consensus 112 i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~-~rG~A~Gi~~--g~G~~G~~l~~~ 181 (462)
T PRK15034 112 IPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKA-KQGSALGING--GLGNLGVSVMQL 181 (462)
T ss_pred HHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHh-HhHHHHHHHH--HHHhhHHHHHHH
Confidence 775543321 0124677778888888887 667788889999999998 8999999873 244555544433
No 209
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.80 E-value=1.7e-07 Score=95.12 Aligned_cols=158 Identities=14% Similarity=0.009 Sum_probs=112.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHHh---cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSLS---LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL 322 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~ 322 (703)
+++.+++..++.|+.......+...++.|..+ +|.++.+.++..+.+..+..+|.++.++++||+|+|+++.++.++
T Consensus 138 ~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l 217 (310)
T TIGR01272 138 QFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFL 217 (310)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 34445555555555554555555566777764 589999999999999999999999999999999988887777554
Q ss_pred H-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cc
Q 005307 323 L-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QT 397 (703)
Q Consensus 323 ~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~ 397 (703)
. ++.++.... ++... ..+-++.|++.+. |...+...+..|++ .+.+.++. ....+|.+++|++.|.+ ..
T Consensus 218 ~~~~~~l~~~~---~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~ 291 (310)
T TIGR01272 218 AVLLSIGAALT---HGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCL 291 (310)
T ss_pred HHHHHHHHHHc---CCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhc
Confidence 4 555555554 43332 2345577888766 88888888877653 45566665 56678999999988888 56
Q ss_pred cccccccccccchhHHHHHHHH
Q 005307 398 NFKIYKLTFNEDTLPGWVMALL 419 (703)
Q Consensus 398 g~~~~~~~~~~~~~~f~i~~~~ 419 (703)
|. +.+|++..++
T Consensus 292 g~----------~~a~~v~~~~ 303 (310)
T TIGR01272 292 GI----------QLAFALPVPC 303 (310)
T ss_pred cc----------hHHHHHHHHH
Confidence 75 7777754443
No 210
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.80 E-value=3.7e-08 Score=104.12 Aligned_cols=136 Identities=15% Similarity=0.092 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhcccccc
Q 005307 523 FMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILV 602 (703)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~ 602 (703)
++...+.......+|.+ .+.+|.++.+.|+..+...++..++..+.| ++.||+|+|+.+..+.++.+++.++....
T Consensus 15 ~~~~~~~~~~~~~~p~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g-~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-- 90 (385)
T TIGR00710 15 ILGPLGIDMYLPAFPEI-AADLSTPASIVQMTLTLYLLGFAAGQLLWG-PLSDRYGRRPVLLLGLFIFALSSLGLALS-- 90 (385)
T ss_pred HHHHHHHHHhcccHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHhhh-hHHHhcCChHHHHHHHHHHHHHHHHHHHH--
Confidence 33334444444445544 456899999999999999999999998888 99999999999999888887776554333
Q ss_pred ccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 603 PYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
.+.+.+.+..++.+++.+...+...+++.+..|++ +|+++.|... ....+|..++|.+++
T Consensus 91 -~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~g~~~g~~~~~ 150 (385)
T TIGR00710 91 -NNIETLLVLRFVQAFGASAGSVISQALVRDIYPGE-ELSRIYSILM--PVLALAPAVAPLLGG 150 (385)
T ss_pred -ccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcH-HHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 45667777788888888888899999999999988 8999899874 377788889988655
No 211
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.77 E-value=1.3e-07 Score=101.26 Aligned_cols=151 Identities=15% Similarity=0.128 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHH
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGN 326 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~ 326 (703)
+.+..+++..++..++..+.....+.+.++.-.++...+++..+..++..++.+++++++||+|+|+++..+.+.. ++.
T Consensus 225 r~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~ 304 (428)
T PF13347_consen 225 RPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGF 304 (428)
T ss_pred chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHH
Confidence 4455666777777788887777788888774334477888999999999999999999999999999999887655 777
Q ss_pred HHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCCh-------hhhhhHHHHHHHHHHHHHHHHHHhhhhh--
Q 005307 327 TLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPL-------KLRMRASAGFVSASALGMACGPALACLF-- 395 (703)
Q Consensus 327 ~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~-------~~R~~~~~~~~~~~~~G~~lgp~i~~~l-- 395 (703)
++..+... ++.+.+++.-++.|++.|. +...++++|..+. ++.|..+|..+...-+|..+++.+.+.+
T Consensus 305 ~~~~~~~~-~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~ 383 (428)
T PF13347_consen 305 LLLFFLGP-GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLA 383 (428)
T ss_pred HHHHHHHh-hhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 77777711 3899999999999999887 8888999998874 3358888999999999999999988877
Q ss_pred cccc
Q 005307 396 QTNF 399 (703)
Q Consensus 396 ~~g~ 399 (703)
..|+
T Consensus 384 ~~Gy 387 (428)
T PF13347_consen 384 LVGY 387 (428)
T ss_pred HhCc
Confidence 4454
No 212
>PRK11043 putative transporter; Provisional
Probab=98.76 E-value=8.7e-08 Score=101.87 Aligned_cols=140 Identities=13% Similarity=0.044 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHHhhhhHH--hhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhc
Q 005307 520 FVYFMLKYAMEILLAESSVI--TEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLS 597 (703)
Q Consensus 520 ~~~~~~~~~~~~~~~~~~~~--~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~ 597 (703)
+..++...++.....+.|.+ +.+.+|+++.+.|+..++..++..++..+.| +++||+|||+.+..+..+..++.++.
T Consensus 10 ~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g-~l~dr~g~r~~~~~~~~~~~~~~~~~ 88 (401)
T PRK11043 10 YLAGLSMLGFLATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWG-PLSDRYGRKPVLLAGLSLFALGSLGM 88 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhh-hHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443 4566899999999999999999999998888 99999999999998887777765544
Q ss_pred cccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 598 FHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
... .+.+.+.+..++.|++.+...+...+++.+.+|++ +++...+..+ ....++..++|.+++
T Consensus 89 ~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~g~~i~~ 151 (401)
T PRK11043 89 LWV---ESAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQ-KANRVFATIM--PLVALSPALAPLLGA 151 (401)
T ss_pred HHh---cCHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcH-HHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 333 45666666777777777777777778889999887 6666666653 356678888888655
No 213
>PRK09848 glucuronide transporter; Provisional
Probab=98.76 E-value=9.2e-08 Score=103.20 Aligned_cols=150 Identities=15% Similarity=0.185 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNT 327 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~ 327 (703)
+....++.++............|.+.++ +|.++...++......++.+++.+++++++||+|+|+++.++.++. ++.+
T Consensus 230 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~ 309 (448)
T PRK09848 230 LFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYL 309 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 3444444555555544444455555554 6766655555555556788889999999999999999998886654 6666
Q ss_pred HHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChh-------hhhhHHHHHHHHHHHHHHHHHHhhhhh--c
Q 005307 328 LYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLK-------LRMRASAGFVSASALGMACGPALACLF--Q 396 (703)
Q Consensus 328 ~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~-------~R~~~~~~~~~~~~~G~~lgp~i~~~l--~ 396 (703)
+..+. ..++++.+++..++.|+|.+. +...++++|..|.+ ++|..+|+.+.+..+|..+|+.+.+.+ .
T Consensus 310 ~~~~~-~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 310 LFFWV-SVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred HHHHc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554 113677777888888998776 77888888888754 358999999999999999999998877 5
Q ss_pred cccc
Q 005307 397 TNFK 400 (703)
Q Consensus 397 ~g~~ 400 (703)
.|+.
T Consensus 389 ~G~~ 392 (448)
T PRK09848 389 SGYI 392 (448)
T ss_pred cCCC
Confidence 5653
No 214
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.75 E-value=7.8e-08 Score=89.28 Aligned_cols=317 Identities=10% Similarity=0.032 Sum_probs=169.8
Q ss_pred HHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHHHHHHHHHhhccc
Q 005307 256 NTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLLVGNTLYAMAYDL 335 (703)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~a~~~ 335 (703)
..++.+.+.....|.+-.+...+|....++|.+.-+.....++...+.|.++|+-|||+.-+.-.+..+-+.+.-.+
T Consensus 45 VyslmmAgDWLQgPYvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTKhS--- 121 (454)
T KOG4332|consen 45 VYSLMMAGDWLQGPYVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITKHS--- 121 (454)
T ss_pred HHHHHHhhhhhcCceeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhhcC---
Confidence 34445556667777777777788888889998888888888889999999999999998644333333333334445
Q ss_pred chhHHHHHHHHHHhhcCcc--hhhhH-HhhccCChhhhhhHHH----HHHHHHHHHHHHHHHhhhhh--------ccccc
Q 005307 336 NSIAVLLIGRLFCGLGSAR--AVNRR-YISDCVPLKLRMRASA----GFVSASALGMACGPALACLF--------QTNFK 400 (703)
Q Consensus 336 ~~~~~l~i~r~l~Gi~~g~--~~~~~-~i~~~~~~~~R~~~~~----~~~~~~~~G~~lgp~i~~~l--------~~g~~ 400 (703)
+.+..++++|++.|++.+. .+..+ +++|... +|+.--- .+.-+..+|.-+-.+++|.. ..|.
T Consensus 122 pqYkVLmVGR~LGGiaTsLLFSaFEsWliaEHne--kr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGP- 198 (454)
T KOG4332|consen 122 PQYKVLMVGRVLGGIATSLLFSAFESWLIAEHNE--KRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGP- 198 (454)
T ss_pred CceEEEeehhhhhhHHHHHHHHHHHHHHHHHhhh--ccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCC-
Confidence 8999999999999999887 55544 4666553 2222111 12222223333333333332 3343
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCcccc
Q 005307 401 IYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQ 480 (703)
Q Consensus 401 ~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (703)
-.||-..+.+..+...+++--..|......+
T Consensus 199 ---------VAPFdAAacfLaigmAvil~~W~ENygdps~---------------------------------------- 229 (454)
T KOG4332|consen 199 ---------VAPFDAAACFLAIGMAVILSSWSENYGDPSE---------------------------------------- 229 (454)
T ss_pred ---------CCchHHHHHHHHHHHHHHHhhhhhccCChhh----------------------------------------
Confidence 4565554444444433333222222211100
Q ss_pred ccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchh--HHHHHHhh
Q 005307 481 ELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSR--VAIFLACL 558 (703)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~--~g~~~~~~ 558 (703)
++.-...-+...+.+.. ++++.++-.+..++-...+.+...+.+-+. -++.. -|++++.+
T Consensus 230 ------------~kdlltqf~gaa~aiaS--D~ki~LLG~iqsLFE~smytFVFLWTPaLs----pn~e~iPhGfiFatF 291 (454)
T KOG4332|consen 230 ------------NKDLLTQFKGAARAIAS--DEKIALLGAIQSLFEGSMYTFVFLWTPALS----PNDEEIPHGFIFATF 291 (454)
T ss_pred ------------hHHHHHHhhHhHHHHhc--chHHHHHHHHHHHHhhhhheeeeeecccCC----CCcccCCchhHHHHH
Confidence 00000000001111111 444444433333333333333322222221 11222 37888887
Q ss_pred hhhhhhHHHHHHhhhhhhhhhH--HHHHHHHHHHHHHHhh--ccc--cccccchhHHHHHHHHHHhhhhhhhHHHHHHHH
Q 005307 559 GLTVLPVNIIVGNYISNIFEER--QVLLASEIIVCIGILL--SFH--ILVPYSVPQYVGSALITFVAAEVLEGVNLSLLS 632 (703)
Q Consensus 559 ~~~~~~~~~~~~~~l~~r~g~r--~~~~~~~~~~~i~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (703)
.+.+++|+-+.. ++..|-..+ ..+.+.+++..+.+.+ ... .+...+...-.++.+++-.+.|..+|..+-+-+
T Consensus 292 MlASmLGSSla~-Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwPSimkmRs 370 (454)
T KOG4332|consen 292 MLASMLGSSLAS-RLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWPSIMKMRS 370 (454)
T ss_pred HHHHHHhhHHHH-HHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 888888887776 444433222 2333444443333322 111 111223334456666666778889999999999
Q ss_pred hhccCCCcccccchh
Q 005307 633 RVMSSRLSRGTYNGG 647 (703)
Q Consensus 633 ~~~~~~~~~g~~~g~ 647 (703)
+..|++ .|.+.+..
T Consensus 371 qyIPEe-arstimNf 384 (454)
T KOG4332|consen 371 QYIPEE-ARSTIMNF 384 (454)
T ss_pred hhCCHH-HHhhhhhh
Confidence 999999 77665554
No 215
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.75 E-value=1.1e-07 Score=100.77 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHh
Q 005307 516 KVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGIL 595 (703)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~ 595 (703)
....+..+....+.......+|.+. +.+|.+..+.++..+...++..++..+.| +++||+|||+.+..+.++.+++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~lp~~~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G-~l~Dr~g~r~~l~~~~~~~~i~~~ 83 (392)
T PRK10473 6 LCSFALVLLYPAGIDMYLVGLPRIA-ADLNASEAQLHIAFSVYLAGMAAAMLFAG-KIADRSGRKPVAIPGAALFIIASL 83 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhHh-HHHHHhCChHHHHHHHHHHHHHHH
Confidence 3344444455555555555566655 45799999999999998888888888878 999999999999998888777765
Q ss_pred hccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 596 LSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+.... .+.+.+++..++.+++.+...+...+++.+.+|++ +|+++.|..+. ...++..++|.+++
T Consensus 84 ~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~-~r~~~~~~~~~--~~~i~~~~~~~i~~ 148 (392)
T PRK10473 84 LCSLA---ETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDR-RRAKVLSLLNG--ITCIIPVLAPVLGH 148 (392)
T ss_pred HHHHh---CcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHH-HHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 54333 34555666667778888888888899999999988 89988888743 66678888888554
No 216
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=98.73 E-value=2.9e-06 Score=83.27 Aligned_cols=348 Identities=13% Similarity=0.042 Sum_probs=188.1
Q ss_pred hHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhcc-----ccCchhHHHHHHH
Q 005307 247 FTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSN-----RSYLKPLVFSSIV 321 (703)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~D-----r~Grr~~l~~~~~ 321 (703)
.+.+.++.+...+-++-.+... .+|.+.+.=|.|-+..+...-++. -...-++|.++.| |+|||+.-++-.-
T Consensus 30 ~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q 106 (510)
T KOG3574|consen 30 RSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQ 106 (510)
T ss_pred hhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehH
Confidence 4566777777777788888887 889998877777776665433321 2233567888888 9999886655433
Q ss_pred HHHHHHHHHhhcc----------cchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHH
Q 005307 322 LLVGNTLYAMAYD----------LNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGP 389 (703)
Q Consensus 322 ~~~~~~~~~~a~~----------~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp 389 (703)
..+|.++..+++. .++...+....++.-+..+. .+..++.-.+..+++.|.+......+...|..+|.
T Consensus 107 ~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~GyfL~~ 186 (510)
T KOG3574|consen 107 YLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGYFLGN 186 (510)
T ss_pred HHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhHHhhc
Confidence 3333333333321 13444444455666666666 77778877888888888777766666666666555
Q ss_pred Hhhhhh-c--------ccccc--cccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccC
Q 005307 390 ALACLF-Q--------TNFKI--YKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVD 458 (703)
Q Consensus 390 ~i~~~l-~--------~g~~~--~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (703)
.+--.+ . .+|.. +-..+.+ ..|+.+.+..++..+..+ +.++++....
T Consensus 187 ~ifLaL~s~dF~N~y~rs~P~~~g~ItL~g---y~~fwg~~~~vat~Lv~~-~kke~~~~~~------------------ 244 (510)
T KOG3574|consen 187 VVFLALESPDFCNTYLRSIPLDQGFITLAG---YLWFWGALFIVATTLVAL-LKKENDESVD------------------ 244 (510)
T ss_pred ceeeEecChhhhhHHHhcCcCccceEEhhH---HHHHHHHHHHHHHHHHHH-hcCCCchhhh------------------
Confidence 443333 1 11210 0011122 234444444444444444 3333221110
Q ss_pred CCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhh-CcchHHHHHHHHHHHHHHHHHHhhhh
Q 005307 459 NGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLL-TPSVKVQLFVYFMLKYAMEILLAESS 537 (703)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (703)
++........++-++... -|.+..+..+....-+++.+-....+
T Consensus 245 -----------------------------------~e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da~t~ 289 (510)
T KOG3574|consen 245 -----------------------------------EELELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADALTS 289 (510)
T ss_pred -----------------------------------hhhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhhccc
Confidence 001112223444444443 67787788888888888888877777
Q ss_pred HHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhh-----hhhHHHHHHHHHHHHHHHhhcccc-cc-----ccc-
Q 005307 538 VITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNI-----FEERQVLLASEIIVCIGILLSFHI-LV-----PYS- 605 (703)
Q Consensus 538 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r-----~g~r~~~~~~~~~~~i~~~~~~~~-~~-----~~~- 605 (703)
.-+.+ .|++..+.++.....--..++.....|.+..+. +-++....++.......+...... .. +..
T Consensus 290 LkLle-~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~~G~~~~~~ 368 (510)
T KOG3574|consen 290 LKLLE-HGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHSDGTFPRGY 368 (510)
T ss_pred hHHHH-cCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccCCCceeech
Confidence 77766 588888876554333333334444444222211 122222223332222222222111 10 011
Q ss_pred hhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhh
Q 005307 606 VPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLAR 658 (703)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~ 658 (703)
....+....+........+...++..+++.++. ..|+.+.+.|. ..++|+
T Consensus 369 ~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~-iggTymTlLNT--LsnLGg 418 (510)
T KOG3574|consen 369 YILLITSYAFHQVFVTSMFVSGMAFHAQISDPA-IGGTYMTLLNT--LSNLGG 418 (510)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcc-cCccHHHHHHH--HHHhcC
Confidence 112222233334444455667778888999998 88998888854 555554
No 217
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.72 E-value=8.1e-08 Score=98.55 Aligned_cols=165 Identities=15% Similarity=0.108 Sum_probs=142.4
Q ss_pred HHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHH
Q 005307 251 LLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLY 329 (703)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~ 329 (703)
.++++..++.+.+.+.+...+-..+++++..+...|........+-++.-++.+++..++|+-+++.+++.+. +=.+.+
T Consensus 374 llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~ 453 (618)
T KOG3762|consen 374 LLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYY 453 (618)
T ss_pred EehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHH
Confidence 3456666777778888888888999999999999998888888899999999999999999999999998876 666667
Q ss_pred HhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHH-HHHHHHHHHHhhhhh--ccccccccc
Q 005307 330 AMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSA-SALGMACGPALACLF--QTNFKIYKL 404 (703)
Q Consensus 330 ~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~-~~~G~~lgp~i~~~l--~~g~~~~~~ 404 (703)
... +|.|+.+...+++|+..+. .++.+|+++..||+.|..+.++++.. .++|-.+|.+|||.+ .+|-
T Consensus 454 S~L---~n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~----- 525 (618)
T KOG3762|consen 454 SYL---QNPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGA----- 525 (618)
T ss_pred HHh---cCchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehh-----
Confidence 788 9999999999999999887 99999999999999999999987665 799999999999999 5565
Q ss_pred ccccchhHHHHHHHHHHHHHHHHH
Q 005307 405 TFNEDTLPGWVMALLWLVYLLWLW 428 (703)
Q Consensus 405 ~~~~~~~~f~i~~~~~~~~~i~~~ 428 (703)
|..|++.++.+++.+++..
T Consensus 526 -----~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 526 -----RTTFRIFGIACLVTLALFI 544 (618)
T ss_pred -----HHHHHHHHHHHHHHHHHHH
Confidence 8889988888776665443
No 218
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.72 E-value=3.5e-07 Score=99.25 Aligned_cols=176 Identities=13% Similarity=0.012 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhH--------H
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPL--------V 316 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~--------l 316 (703)
+++.++.+.+..+............+|.+..+ +|.+..+.|++.++..++.+++.++.|+++||+++|+. +
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~ 338 (465)
T TIGR00894 259 KSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKI 338 (465)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 34556666677777777766666677888755 79999999999999999999999999999999764321 1
Q ss_pred HHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 005307 317 FSSIVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALAC 393 (703)
Q Consensus 317 ~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~ 393 (703)
..+.... .+..++.......+.+..+++-++.|.+.+. +.......|..|. .+|.++++.+....+|..++|.+.|
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g 417 (465)
T TIGR00894 339 FNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAG 417 (465)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1111111 1111111111113444444455555555443 3333444566654 8999999999999999999999988
Q ss_pred hh-cc-cccccccccccchhHHHHHHHHHHHHHHHHHH
Q 005307 394 LF-QT-NFKIYKLTFNEDTLPGWVMALLWLVYLLWLWI 429 (703)
Q Consensus 394 ~l-~~-g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~ 429 (703)
.+ .. +| ++|+..|++.+++.++..++..+
T Consensus 418 ~~~~~~~~-------~~~~~~f~~~~~~~~i~~i~~~~ 448 (465)
T TIGR00894 418 NILSQDSK-------NVWLIVFLIMAFVNILCVIFYLI 448 (465)
T ss_pred eeeCCCCc-------hHHHHHHHHHHHHHHHHHHHeee
Confidence 87 32 21 12488888888777776655443
No 219
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.71 E-value=9.4e-08 Score=100.63 Aligned_cols=149 Identities=12% Similarity=-0.009 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHhhhhhccchhHHHH-hcCccchhhhHHHHHHHHHHHHHhhhhhhhccccC-chhHHH-HHH-HHH-H
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADNYSL-SLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSY-LKPLVF-SSI-VLL-V 324 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~G-rr~~l~-~~~-~~~-~ 324 (703)
++.+.+..++............|.+.. .+|.++.+.+++.+.+.++..++.++.|+++||.+ ||+..+ ... ... +
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~ 297 (379)
T TIGR00881 218 LWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIV 297 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 444444555555554555556677765 47999999999999999999999999999999854 333322 222 222 2
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccc
Q 005307 325 GNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNF 399 (703)
Q Consensus 325 ~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~ 399 (703)
+..+.... ...+.+.+++..++.|+..+. +....++.|.+|+++|+++.|+.+....+|..+||.+.|.+ .+||
T Consensus 298 ~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~ 375 (379)
T TIGR00881 298 SLLVYWLN-PAANPLMDLICLFALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGW 375 (379)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcc
Confidence 22222221 114555666667777765443 55677889999999999999999999999999999999998 6676
No 220
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.71 E-value=4.4e-07 Score=92.41 Aligned_cols=162 Identities=25% Similarity=0.311 Sum_probs=125.5
Q ss_pred HHHHHHHHHhhhhhccchhHHHHhcCccc--hhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH-HHHHHHHH
Q 005307 254 LVNTFLYMVNTYVIVPTADNYSLSLGAAA--TLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL-LVGNTLYA 330 (703)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~g~s~--~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~-~~~~~~~~ 330 (703)
....+....+.....+..+.+..+++.+. ...+++.+.+.++..++.++.|.++||+|||+.++.+... .++.++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 87 (338)
T COG0477 8 ALAALLLGLDLGLLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLA 87 (338)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHH
Confidence 33444444666777778888888887666 4889999999999999999999999999999888877664 36667777
Q ss_pred hhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCCh-hhhhhHHHHHHH-HHHHHHHHHHHhhhhh-cccccccccc
Q 005307 331 MAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPL-KLRMRASAGFVS-ASALGMACGPALACLF-QTNFKIYKLT 405 (703)
Q Consensus 331 ~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~-~~R~~~~~~~~~-~~~~G~~lgp~i~~~l-~~g~~~~~~~ 405 (703)
+... .+.+.+++.|++.|++.|. +...+++.|+.|+ ++|+...+.... ...+|.+++|.+++.+ ...
T Consensus 88 ~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 159 (338)
T COG0477 88 LAPN-VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGAL------- 159 (338)
T ss_pred hCcc-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 7711 2489999999999999886 8899999999998 788999998888 6889999999888887 431
Q ss_pred cccchhHHHHHHHHHHHH
Q 005307 406 FNEDTLPGWVMALLWLVY 423 (703)
Q Consensus 406 ~~~~~~~f~i~~~~~~~~ 423 (703)
...|++.|++........
T Consensus 160 ~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 160 LWGWRAAFLLAALLGLLL 177 (338)
T ss_pred hcchHHHHHHHHHHHHHH
Confidence 112377666665554433
No 221
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.71 E-value=4.7e-07 Score=94.34 Aligned_cols=166 Identities=12% Similarity=-0.027 Sum_probs=108.2
Q ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCc---hhHHHH-HHHH-HH
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYL---KPLVFS-SIVL-LV 324 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Gr---r~~l~~-~~~~-~~ 324 (703)
++.+.+..++..........-+|.+.++.|.+.. .+...++..+...++ .++++||.+| |+.... ..+. .+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g---~~~~~d~~~r~~~r~~~~~~~~~~~a~ 269 (368)
T TIGR00903 194 LWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG---VAVIPDRVARAGLRSIYIRAAALLIAA 269 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---HHHhhHHhhhhhhHHHHHHHHHHHHHH
Confidence 3444455555555555555668888888877754 566666665555555 4667777654 343332 2222 24
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 005307 325 GNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLFQTNFKIY 402 (703)
Q Consensus 325 ~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l~~g~~~~ 402 (703)
+..+.++. .+.+..++.-.+.|++... +...++.+|.+|++.|++++|+.+....+|.+++|++.+.+..|.
T Consensus 270 ~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~--- 343 (368)
T TIGR00903 270 FFLALAFE---LNRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSA--- 343 (368)
T ss_pred HHHHHHHc---cccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCH---
Confidence 44444444 4444445555566665544 667789999999999999999999999999999999888772254
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHhccC
Q 005307 403 KLTFNEDTLPGWVMALLWLVYLLWLWISFRE 433 (703)
Q Consensus 403 ~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e 433 (703)
...|.+.++..++..+... .+++
T Consensus 344 -------~~~f~~~~~~~~i~~~~~~-~~~~ 366 (368)
T TIGR00903 344 -------EAYFTFLAILITIAFAIAL-LLPN 366 (368)
T ss_pred -------HHHHHHHHHHHHHHHHHHH-hCCC
Confidence 6777777777777666543 3344
No 222
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.71 E-value=1.3e-07 Score=98.80 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHH-HHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMA-VAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNT 327 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~-l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~ 327 (703)
++.+.+..++...........+|.+..++|.++.+.|.+.++.. ++.+++.+++|+++||+|||+.++.+.++. ++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~ 290 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNA 290 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 33344444445555556667788888889999999998887765 678899999999999999988877765543 4444
Q ss_pred HHHhh-ccc-------chhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHH
Q 005307 328 LYAMA-YDL-------NSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASA 382 (703)
Q Consensus 328 ~~~~a-~~~-------~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~ 382 (703)
+..+. ... ++.+.++++.++.|++.+. +...+++.|.+|+++||+.+|++++..+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 291 GFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 43332 111 3457788888899999876 8999999999999999999999887654
No 223
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.71 E-value=4.2e-07 Score=87.16 Aligned_cols=127 Identities=13% Similarity=0.049 Sum_probs=100.6
Q ss_pred hccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHH-HHHHHHHHHhhcc----cchhHHH
Q 005307 267 IVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIV-LLVGNTLYAMAYD----LNSIAVL 341 (703)
Q Consensus 267 ~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~-~~~~~~~~~~a~~----~~~~~~l 341 (703)
....-|.+.+.+|.|.++...+.++..+|..+ .++.|.+.|++|.+.++.++.+ .++|..+..++.. ..++|.+
T Consensus 21 Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~ 99 (250)
T PF06813_consen 21 FSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM 99 (250)
T ss_pred hhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH
Confidence 33445777788999999999999999999987 4889999999999999888866 4488877776632 2477888
Q ss_pred HHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 342 LIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 342 ~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
.+..++.|.+.+. .++.....+.+| ++||.+.|+.-...+++..+-..+...+
T Consensus 100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~ 154 (250)
T PF06813_consen 100 CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAF 154 (250)
T ss_pred HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHH
Confidence 8888888887665 555555567787 5899999999999999988776666655
No 224
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=5.1e-08 Score=96.36 Aligned_cols=138 Identities=17% Similarity=0.209 Sum_probs=113.9
Q ss_pred ccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhh
Q 005307 544 FIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVL 623 (703)
Q Consensus 544 ~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (703)
.+-+.+++|++++...+..++.+.++| .+.||+|+|..+++|+.++..+.++..+. .+.+..+++=.+.|+|.++.
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G-~l~~~iGy~ipm~~Gl~vmf~sTilFafg---~sy~~l~vAR~LQgvgsA~~ 176 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFG-NLIDRIGYKIPMVAGLFVMFLSTILFAFG---NSYPMLFVARSLQGVGSAFA 176 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccch-hhHHHhccccHHHHHHHHHHHHHHHHHHc---chhHHHHHHHHHhhhhHHHH
Confidence 345677889999999999999999999 99999999999999999988885544333 56678888889999999999
Q ss_pred hHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee-eeccccCCcccccchhHHHHHHHHHHHH
Q 005307 624 EGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLGESRLLNVTLLPSLFICISSIVA 694 (703)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (703)
.....+++++.+|++.+||+++|+... +.++|-.+||.+++ +++..| ...+|.++++++++-
T Consensus 177 ~tsglamlAd~f~~d~er~~vmGialg--fislG~lvgPpfGGilYe~~G-------k~aPFlVL~~v~Lld 239 (464)
T KOG3764|consen 177 DTSGLAMLADVFPEDNERGSVMGIALG--FISLGVLVGPPFGGILYEFAG-------KSAPFLVLAIVLLLD 239 (464)
T ss_pred HhhhHHHHHHHcccchhhhHHHHHHHH--HHhccceecCCcccchHhhcC-------CcCcHHHHHHHHHHH
Confidence 999999999999999778999999855 77799999999998 667777 344555555554443
No 225
>PRK10133 L-fucose transporter; Provisional
Probab=98.69 E-value=1.7e-07 Score=100.31 Aligned_cols=147 Identities=9% Similarity=0.056 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Q 005307 515 VKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGI 594 (703)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~ 594 (703)
+..+.+.++...+.........|.+ ++.+|.++.+.|+..+...++..+++.+.+ ++.||+|+|+++..+..+.+++.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i-~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g-~l~dr~G~r~~l~~g~~~~~~~~ 105 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAG-ILMKKLSYKAGIITGLFLYALGA 105 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCcHHHHHHHHHHHHHHH
Confidence 4444555555555555555666665 778999999999999999999999999988 99999999999999999998887
Q ss_pred hhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 595 LLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
++........+++.+++..++.|++.+...+...+++.+..|++ +++..++.. .....+|..+||.+++
T Consensus 106 ~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~-~~~~~~s~~--~~~~~~G~~~g~~~g~ 174 (438)
T PRK10133 106 ALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPES-SGHFRLNLA--QTFNSFGAIIAVVFGQ 174 (438)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChh-hHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 65421111356777888889999999999999899888865555 444446665 4466788888887654
No 226
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=98.69 E-value=5.4e-05 Score=79.96 Aligned_cols=149 Identities=15% Similarity=0.152 Sum_probs=100.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHH-hhhhhhhccccCchhHHHHHHHHH-
Q 005307 247 FTSLLLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFS-SVYFSAWSNRSYLKPLVFSSIVLL- 323 (703)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~-~~~~G~l~Dr~Grr~~l~~~~~~~- 323 (703)
++.++...+..|+..+++++.-+.=..+.-. .+.++..+.++-+...+...+. .++.+++++|++|++++.+....+
T Consensus 6 ~~k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~ 85 (472)
T TIGR00769 6 LKKFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFL 85 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHH
Confidence 4455666666777777776665542222111 1335578899999888877776 999999999999998877665433
Q ss_pred HHHHHHHhh-ccc-c--------------------------hhHHHHHHHHHHhhcCcc--h-hhhHHhhccCChhhhhh
Q 005307 324 VGNTLYAMA-YDL-N--------------------------SIAVLLIGRLFCGLGSAR--A-VNRRYISDCVPLKLRMR 372 (703)
Q Consensus 324 ~~~~~~~~a-~~~-~--------------------------~~~~l~i~r~l~Gi~~g~--~-~~~~~i~~~~~~~~R~~ 372 (703)
+..+++++. ++. + +.|...+..+...+-+.. + ...+++.|++..++-.|
T Consensus 86 ~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakR 165 (472)
T TIGR00769 86 GFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKR 165 (472)
T ss_pred HHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 333333332 000 0 122333333444444443 3 67788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Q 005307 373 ASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 373 ~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
.++++..+.++|.++|+.+..++
T Consensus 166 fy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 166 FYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888877
No 227
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.69 E-value=5.1e-07 Score=95.93 Aligned_cols=142 Identities=15% Similarity=0.099 Sum_probs=97.2
Q ss_pred hHHHHhcCccchhhhHHHHHH-HHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHH---HhhcccchhHHHHHHHH
Q 005307 272 DNYSLSLGAAATLCGVIIGSM-AVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLY---AMAYDLNSIAVLLIGRL 346 (703)
Q Consensus 272 ~~~~~~~g~s~~~~g~i~s~~-~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~---~~a~~~~~~~~l~i~r~ 346 (703)
+.+.+++|.++.+.|++.++. .++..++.+++|++.||+|||+.+..+.+.. +..+.+ ++. .++.+.++++-+
T Consensus 234 ~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~ 311 (402)
T PRK11902 234 TFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT--PKHLWTMALAIG 311 (402)
T ss_pred HHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--CCcHHHHHHHHH
Confidence 445566899999999998665 4568999999999999999988776654433 333322 333 145566665554
Q ss_pred H----HhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHH
Q 005307 347 F----CGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMAL 418 (703)
Q Consensus 347 l----~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~ 418 (703)
+ .|++.+. +....++.+..|.+++ +.++...++|.++++.++|.+ .+|| +..|.+.++
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~----------~~~f~~~~~ 377 (402)
T PRK11902 312 IENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGW----------PGFYLMTVV 377 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCh----------HHHHHHHHH
Confidence 3 4444444 5666777777776654 445555667777666678887 7887 899999888
Q ss_pred HHHHHHHHHHH
Q 005307 419 LWLVYLLWLWI 429 (703)
Q Consensus 419 ~~~~~~i~~~~ 429 (703)
++++.+++.+.
T Consensus 378 ~~~~~~~~~~~ 388 (402)
T PRK11902 378 IALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHH
Confidence 88777655433
No 228
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.68 E-value=3.1e-07 Score=92.19 Aligned_cols=171 Identities=16% Similarity=0.104 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHH-hcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHH-HHHH
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSL-SLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIV-LLVG 325 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~-~~~~ 325 (703)
+..+.+++..+...-++-.....+|.|.+ +||.++...|.+.+.+.+...+..|.+|+++||+|.++++.+... +.++
T Consensus 218 ~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~ 297 (417)
T COG2223 218 KDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALA 297 (417)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHH
Confidence 33444444444444444444455666655 599999999999999999999999999999999998877776644 4455
Q ss_pred HHHHHhhccc----chhHH----HHHHHHHHhhcCcchhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--
Q 005307 326 NTLYAMAYDL----NSIAV----LLIGRLFCGLGSARAVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-- 395 (703)
Q Consensus 326 ~~~~~~a~~~----~~~~~----l~i~r~l~Gi~~g~~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-- 395 (703)
..+..+.... ++... ++...++.|+|.| .+..++..++|. +-|.+.|+..+..++|...-|..-+..
T Consensus 298 ~~~l~~~~~~~~~~~~~~~~~~~~l~l~~~~G~GnG--svfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~ 374 (417)
T COG2223 298 AALLSLFLTGFGHGGSFVVFVAVFLALFVFAGLGNG--SVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLD 374 (417)
T ss_pred HHHHHccccccccCcchHHHHHHHHHHHHHhccCcc--hheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHH
Confidence 5555554210 23333 4444555555554 444455555543 778999999999999988888877776
Q ss_pred cccccccccccccchhHHHHHHHHHHHHHHHHHHh
Q 005307 396 QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWIS 430 (703)
Q Consensus 396 ~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~ 430 (703)
..|- |...|++...+.+++.+..+..
T Consensus 375 ~tg~---------~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 375 LTGS---------YTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred hccc---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5552 3889999988888887766653
No 229
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.68 E-value=5.2e-07 Score=92.66 Aligned_cols=154 Identities=17% Similarity=0.158 Sum_probs=125.7
Q ss_pred hhHHHHhc----CccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHH-HHHHHHHHHhhcccchhHHHHHHH
Q 005307 271 ADNYSLSL----GAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIV-LLVGNTLYAMAYDLNSIAVLLIGR 345 (703)
Q Consensus 271 l~~~~~~~----g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~-~~~~~~~~~~a~~~~~~~~l~i~r 345 (703)
.|.|...+ +.++...|.+.++..+.-++.-.+..++.+|+|.|+.++++.+ ..+=.++++++ ++.+.+.+.+
T Consensus 243 f~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~---~~~~~i~~~k 319 (412)
T PF01306_consen 243 FPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA---TNPWVISLIK 319 (412)
T ss_dssp HHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-----SHHHHHHHH
T ss_pred HHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh---cchHHHHHHH
Confidence 45555543 3456779999999999999999999999999999988877754 55888899999 9999999999
Q ss_pred HHHhhcCcc--hhhhHHhhccCChhhhhhHHHH-HHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHHHH
Q 005307 346 LFCGLGSAR--AVNRRYISDCVPLKLRMRASAG-FVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALLW 420 (703)
Q Consensus 346 ~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~-~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~ 420 (703)
.+.|+-.+. ....-|+++.+|++..++...+ .+.+.++|..+.+.++|.+ ..|. +..|++++.+.
T Consensus 320 lLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~----------~~tylimg~iv 389 (412)
T PF01306_consen 320 LLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGF----------QHTYLIMGLIV 389 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCc----------HHHHHHHHHHH
Confidence 999999887 8899999999999988888877 4788999999999999999 7786 88999999988
Q ss_pred HHHHHHHHHhccCCCcc
Q 005307 421 LVYLLWLWISFREPPLE 437 (703)
Q Consensus 421 ~~~~i~~~~~l~e~~~~ 437 (703)
++..++..+.++..++.
T Consensus 390 ~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 390 LPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHHHHHS--SSST
T ss_pred HHHHHHheeeecCCCcc
Confidence 88888888877766543
No 230
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.67 E-value=1.9e-07 Score=101.24 Aligned_cols=152 Identities=13% Similarity=0.099 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNT 327 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~ 327 (703)
.+..+++..++......+.....+.+.+....+....+++.++..++.+++.+++++++||+|+|+.+.++.++. ++.+
T Consensus 232 ~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~ 311 (473)
T PRK10429 232 QLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCG 311 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555544445667778888888899999999999999999999988776543 4444
Q ss_pred HHHhh--cccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCC-------hhhhhhHHHHHHHHHHHHHHHHHHhhhhh-
Q 005307 328 LYAMA--YDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVP-------LKLRMRASAGFVSASALGMACGPALACLF- 395 (703)
Q Consensus 328 ~~~~a--~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~-------~~~R~~~~~~~~~~~~~G~~lgp~i~~~l- 395 (703)
...+. ...++.+.+++.-++.|++.+. +...++++|..+ .+..|..+|....+.-+|..+|+.+.|++
T Consensus 312 ~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 312 VLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred HHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43321 1125677777777888888776 778889999866 33345688999999999999999999887
Q ss_pred -ccccc
Q 005307 396 -QTNFK 400 (703)
Q Consensus 396 -~~g~~ 400 (703)
..|+.
T Consensus 392 ~~~Gy~ 397 (473)
T PRK10429 392 GLIGYV 397 (473)
T ss_pred HHcCCC
Confidence 55653
No 231
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.64 E-value=2.7e-07 Score=97.86 Aligned_cols=141 Identities=15% Similarity=0.092 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhc
Q 005307 518 QLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLS 597 (703)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~ 597 (703)
.....++..+........+|.+. +.+|+++.+.++..+...++..++..+.| +++||+|||+.+..+..+..++.++.
T Consensus 13 ~~~~~~~~~~~~~~~~p~~~~i~-~~~~~s~~~~~~~~~~~~~~~~~~~~~~G-~l~Dr~grr~~~~~~~~~~~~~~~~~ 90 (394)
T PRK11652 13 LVLLVAVGQMAQTIYVPAIADMA-RDLNVREGAVQAVMAAYLLTYGLSQLFYG-PLSDRVGRRPVILVGMSIFILGTLVA 90 (394)
T ss_pred HHHHHHHHHHHHHHHhccHHHHH-HHhCCCHHHHHHHHHHHHHHHHHHHHhhh-hHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 33334444444444444455544 55899999999999999999999998888 99999999999998888777775544
Q ss_pred cccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 598 FHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
... .+.+.+.+..++.+++.+...+....+..+..+++ +++.+.+.. .....++..++|.+++
T Consensus 91 ~~~---~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~g~~i~~ 153 (394)
T PRK11652 91 LFA---HSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGT-QLRHANSLL--NMGILVSPLLAPLIGG 153 (394)
T ss_pred HHH---ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHH-HHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 332 45666677777778877777777777888888776 677767766 3366677788888555
No 232
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.62 E-value=1.5e-07 Score=99.10 Aligned_cols=130 Identities=15% Similarity=0.141 Sum_probs=103.7
Q ss_pred HHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhH
Q 005307 529 MEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQ 608 (703)
Q Consensus 529 ~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 608 (703)
...+...+|.+.. .+|+++.+.++..++..++..++..+.| ++.||+|||+.+..+..+.+++.++.... .+.+.
T Consensus 7 ~~~~~p~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~~~i~~~~~~~~---~~~~~ 81 (377)
T PRK11102 7 IDMYLPALPVIAA-DFGVSAGSVQMTLSAYILGFAIGQLFYG-PMADSFGRKPVILGGTLVFALAAVACALA---QTIDQ 81 (377)
T ss_pred HHHHhccHHHHHH-HhCCCHHHHHHHHHHHHHHHHHHHHhhc-hHHhhcCChHHHHHHHHHHHHHHHHHHHH---ccHHH
Confidence 3344455666665 4799999999999999999999988888 99999999999999988887776654433 45566
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 609 YVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+.+..++.+++.+...+...+++.+..|++ +|+++.+... ....+|..++|.+++
T Consensus 82 ~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~g~~~~~~~~~ 136 (377)
T PRK11102 82 LIYMRFLHGLAAAAASVVINALMRDMFPKE-EFSRMMSFVT--LVMTIAPLLAPIIGG 136 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 677777888888888888889999999988 8998888873 466788899988655
No 233
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=98.62 E-value=3.4e-07 Score=97.44 Aligned_cols=127 Identities=12% Similarity=0.070 Sum_probs=97.5
Q ss_pred HHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHH
Q 005307 532 LLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVG 611 (703)
Q Consensus 532 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 611 (703)
....+|. ..+.+|.+....+...++..++..++.++.| +++||+|||+++..+..+.+++.++.... .+.+.+++
T Consensus 35 ~~p~l~~-i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G-~l~dr~Grr~~l~~~~~~~~~~~~~~~~a---~~~~~l~~ 109 (413)
T PRK15403 35 IQPGIIN-VVRDFNADVSLAPASVSLYLAGGMALQWLLG-PLSDRIGRRPVLITGALIFTLACAATLFT---TSMTQFLI 109 (413)
T ss_pred hccCHHH-HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhh-HHHHHcCchHHHHHHHHHHHHHHHHHHHc---CCHHHHHH
Confidence 3333443 4456899999999999998899999988877 99999999999999888877775544333 45667777
Q ss_pred HHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 612 SALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
.-++.|++.+...+....++.+.+|++ ++++.++.... ...+|..+||.+++
T Consensus 110 ~r~l~Gi~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~g~~lg~ 161 (413)
T PRK15403 110 ARFIQGTSICFIATVGYVTVQEAFGQT-KGIKLMAIITS--IVLVAPIIGPLSGA 161 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 778888877766667778888888887 77777887733 66788889988665
No 234
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.61 E-value=3.8e-07 Score=94.30 Aligned_cols=124 Identities=12% Similarity=-0.014 Sum_probs=104.8
Q ss_pred hhHHhhhhccccchh-HHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHH
Q 005307 536 SSVITEHYFIWSTSR-VAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSAL 614 (703)
Q Consensus 536 ~~~~~~~~~g~s~~~-~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 614 (703)
..+++.+.+|++..+ .|.++.+...+.++..+..| +++||+|.|+++.++.+...+..++.... .+...+.+.-+
T Consensus 48 a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~G-lLaDrlG~K~vL~l~~l~Wsl~t~L~~fa---~Sl~~L~i~R~ 123 (511)
T TIGR00806 48 ITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVF-LLTDYLRYKPVLVLQALSFVCVWLLLLLG---TSVWHMQLMEV 123 (511)
T ss_pred HHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHH-HHHHHhCchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 445666689999999 99999999999999998877 99999999999998888877775544333 45778888889
Q ss_pred HHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceeee
Q 005307 615 ITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTITL 667 (703)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~~ 667 (703)
+.|++.+... ....++...+|++ +|+++.|..++ ...+|.++++++++.
T Consensus 124 llGvaEA~~~-A~~syI~~WfP~k-ER~ratsi~~s--g~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 124 FYSVTMAARI-AYSSYIFSLVPPS-RYQRAAAYSRA--AVLLGVFLSSVLGQL 172 (511)
T ss_pred HHHHHHHHHH-HHHHHHHHHCCHH-HHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 9999999888 8999999999999 99999999855 777999999987664
No 235
>PRK09669 putative symporter YagG; Provisional
Probab=98.59 E-value=5.9e-07 Score=96.76 Aligned_cols=144 Identities=12% Similarity=0.066 Sum_probs=97.7
Q ss_pred HHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcc
Q 005307 256 NTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYD 334 (703)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~ 334 (703)
..++............+.+.+..-.++...+.+.+...++.+++.+++++++||+|+|+.+..+.+.. ++.+...+. .
T Consensus 237 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~-~ 315 (444)
T PRK09669 237 FNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFI-P 315 (444)
T ss_pred HHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh-C
Confidence 33333333333333333333332223344556666777888899999999999999999888776533 322222221 1
Q ss_pred cchhHHHHHHHHHHhhcCcc--hhhhHHhhccCCh-------hhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccccc
Q 005307 335 LNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPL-------KLRMRASAGFVSASALGMACGPALACLF--QTNFK 400 (703)
Q Consensus 335 ~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~-------~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~ 400 (703)
.++.+.+++..++.|++.+. +...++++|..+. +..|..+|....+..+|..+||.++|++ ..|+.
T Consensus 316 ~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 316 PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 25777888888999999877 8888999998763 2345678888999999999999999987 55653
No 236
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=98.58 E-value=8.9e-06 Score=79.03 Aligned_cols=301 Identities=12% Similarity=0.050 Sum_probs=184.4
Q ss_pred HHHHhhhhhhhccccCchhHHHHHHH-HHHHHHHHHhhcccchhHHHHHHHHHHhhcCcc-hhhhHHhhccCChhhhhhH
Q 005307 296 QVFSSVYFSAWSNRSYLKPLVFSSIV-LLVGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR-AVNRRYISDCVPLKLRMRA 373 (703)
Q Consensus 296 ~~i~~~~~G~l~Dr~Grr~~l~~~~~-~~~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~ 373 (703)
..+.-.+.=.+.|..-.||+++.-.+ ......+..+. ++.+.+=+.-++.|...+. .+.++|+-..++++++.++
T Consensus 55 YLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g---~sV~~mQvlE~FyG~~tAaEIAYysYIYs~Vd~~~Yqrv 131 (433)
T KOG3810|consen 55 YLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFG---PSVKAMQVLEFFYGPATAAEIAYYSYIYSKVDPEMYKRV 131 (433)
T ss_pred HHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhc---CCchheeeehhhcChHHHHHHhhhheeeeecCHHHHHHH
Confidence 33444455567899989998887655 45777888888 9999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh-cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccc
Q 005307 374 SAGFVSASALGMACGPALACLF-QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLL 452 (703)
Q Consensus 374 ~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~ 452 (703)
.|...++.-.|...|..++-.+ ..+|. .|...-.+......++.++. +++|.+++...-++++++..
T Consensus 132 t~y~RaA~L~g~~~g~vlaQlLvs~~~~-------sy~~LN~ISL~~~~ia~~~A-~fLP~v~rSl~f~~~~~~~~---- 199 (433)
T KOG3810|consen 132 TGYCRAAFLVGKFVGSVLAQLLVSLETL-------SYTTLNYISLAEVTIAVLLA-LFLPRVKRSLYFHRLEDKIS---- 199 (433)
T ss_pred HHHhHHHHHHHhHHHhHHHHHHhhhccc-------chhhhchhhHHHHHHHHHHH-hhCCCCchhhhhhcccccce----
Confidence 9999999999999999998888 44431 12444444444444444443 45777664332211111000
Q ss_pred cccccCCCCCCcccccchhcccCCccccccCCCCCCCCccccccc-CC-CcccHH----HHHHh-hCcchHHHHHHHHHH
Q 005307 453 INCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKIT-HR-PVTSIM----SAYRL-LTPSVKVQLFVYFML 525 (703)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~----~~~~~-~~~~~~~~~~~~~~~ 525 (703)
. .+.+ +...+.+ .. ....+. ++... .+|+++...+-..+.
T Consensus 200 -v---------------------~~~e-----------~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~ 246 (433)
T KOG3810|consen 200 -V---------------------GDLE-----------EMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALA 246 (433)
T ss_pred -e---------------------ccch-----------hcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHh
Confidence 0 0000 0000000 00 000111 12111 167776666666666
Q ss_pred HHHHHHHHhhhhHHhhhhc-cccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhH-HHHHHHHHHHHHHHhhccccccc
Q 005307 526 KYAMEILLAESSVITEHYF-IWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEER-QVLLASEIIVCIGILLSFHILVP 603 (703)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~-g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r-~~~~~~~~~~~i~~~~~~~~~~~ 603 (703)
..+++-...+....-.+.. .-.....|..=++..+.++++.+..| .+.-...|. ..++....+.-.|+++.+.. .
T Consensus 247 scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g-~l~i~w~r~g~~ll~~~s~~~agllf~m~~--t 323 (433)
T KOG3810|consen 247 SCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAG-YLNINWNRWGDLLLAVGSAVQAGLLFIMAQ--T 323 (433)
T ss_pred hchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHH-heeeccchhhHHHHHHHHHHhhhhhhhhhc--c
Confidence 6666555554444443321 11112235666677777777777777 665444444 33333333333343443333 4
Q ss_pred cchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhh
Q 005307 604 YSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGL 648 (703)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 648 (703)
.+.|...++.+++...+....++...-++.....+ .-|-++|+.
T Consensus 324 ~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e-~~gLvFGiN 367 (433)
T KOG3810|consen 324 QHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSE-LFGLVFGIN 367 (433)
T ss_pred cceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhh-hheeeeehH
Confidence 66788888888888888777788888888888888 788888885
No 237
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.56 E-value=4e-06 Score=82.50 Aligned_cols=166 Identities=20% Similarity=0.206 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccC-chhHHHHHHHHH-HHHH
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSY-LKPLVFSSIVLL-VGNT 327 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~G-rr~~l~~~~~~~-~~~~ 327 (703)
.+.+.+-.-+..+.++....-+|.+..|-|.|+.+.|++.+...+.++..++....+++|.. +|+..+....+. +|.+
T Consensus 210 aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~ 289 (395)
T COG2807 210 AWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLV 289 (395)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 33344444445556666667789999999999999999999999999999999999999754 677766665544 7777
Q ss_pred HHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCC-hhhhhhHHHHHHHHHHHHHHHHHHhhhhh---cccccc
Q 005307 328 LYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVP-LKLRMRASAGFVSASALGMACGPALACLF---QTNFKI 401 (703)
Q Consensus 328 ~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~-~~~R~~~~~~~~~~~~~G~~lgp~i~~~l---~~g~~~ 401 (703)
.+.+. +....++- -++.|+|.|. +.+...+.+-++ +++-++..|+.+....+=..+||.+.|++ ..+|
T Consensus 290 G~~~~---P~~~~~lw-~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw-- 363 (395)
T COG2807 290 GLLLA---PGQLPILW-ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSW-- 363 (395)
T ss_pred HHHHh---hhhHHHHH-HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCCh--
Confidence 77777 43322222 4889999776 889999988665 55556666777777777778899999999 3455
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHH
Q 005307 402 YKLTFNEDTLPGWVMALLWLVYLLWLWI 429 (703)
Q Consensus 402 ~~~~~~~~~~~f~i~~~~~~~~~i~~~~ 429 (703)
+.+.+..+...++..+..+.
T Consensus 364 --------~~~~~~l~~~~i~m~i~Gl~ 383 (395)
T COG2807 364 --------SAPLVLLALATLLMLIFGLR 383 (395)
T ss_pred --------HHHHHHHHHHHHHHHHHHhh
Confidence 77777766666666555544
No 238
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.55 E-value=2e-06 Score=86.71 Aligned_cols=173 Identities=14% Similarity=0.024 Sum_probs=131.8
Q ss_pred HHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhcc-ccCchhHHHHHHH-HHHHHHHHHhh
Q 005307 256 NTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSN-RSYLKPLVFSSIV-LLVGNTLYAMA 332 (703)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~D-r~Grr~~l~~~~~-~~~~~~~~~~a 332 (703)
..++..+++.+--+++-+|..+ ||.+..+..-+.+....|..++-...|.+.. |.+.++.-.+++. +.++..+..++
T Consensus 216 fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a 295 (403)
T PF03209_consen 216 FLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA 295 (403)
T ss_pred HHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666677777666 8999999999999999999999999999887 4666666555543 33444444443
Q ss_pred cccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccc-ccccc
Q 005307 333 YDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKIYK-LTFNE 408 (703)
Q Consensus 333 ~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~-~~~~~ 408 (703)
-...+.+.+..+-++.|++.|. ....+.+.+...+++-|..+|.+..+..++..+|..+||.+ +..-...+ ....+
T Consensus 296 ~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~a 375 (403)
T PF03209_consen 296 GPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALA 375 (403)
T ss_pred HhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchH
Confidence 3337899999999999999998 66777888999999999999999999999999999999998 44322233 46678
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 005307 409 DTLPGWVMALLWLVYLLWLW 428 (703)
Q Consensus 409 ~~~~f~i~~~~~~~~~i~~~ 428 (703)
|..+|.+-++..++++++..
T Consensus 376 Y~~VF~lEa~ll~~a~~ll~ 395 (403)
T PF03209_consen 376 YGVVFALEAVLLLAALVLLG 395 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888877766665443
No 239
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.54 E-value=1.6e-07 Score=95.12 Aligned_cols=149 Identities=11% Similarity=0.076 Sum_probs=117.2
Q ss_pred hhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhh
Q 005307 540 TEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVA 619 (703)
Q Consensus 540 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 619 (703)
.++.++.++...|++..+..++.++++.+.| ++.||++|++++.+|..+..++.+..-.. .++|.+.+.-.+.|+|
T Consensus 59 v~~~fni~~s~~Gll~~vf~v~~~i~sPl~g-yLadryNR~~v~~vG~~iW~~Av~~~~fs---~~Fwq~~l~R~~vGiG 134 (493)
T KOG1330|consen 59 VQTYFNISDSELGLLQTVFIVVFMIASPLFG-YLADRYNRKRVIAVGIFIWTLAVFASGFS---NHFWQVLLCRGFVGIG 134 (493)
T ss_pred HHHhcCCCchhccchhHHHHHHHHHHHHHHH-HHHhhcCcceEEeeHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccc
Confidence 4556899999999999999999999999999 99999999999999988888876554333 6788999999999999
Q ss_pred hhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee-eeccccCCcccccchhHHHHHHHHHHHHHHHh
Q 005307 620 AEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLGESRLLNVTLLPSLFICISSIVATCIT 698 (703)
Q Consensus 620 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (703)
...+.|+..+++++.+|+. .|+++++++ .+...+|..+|-+.+. +.+..+ . |.+.+....++++++.++..++
T Consensus 135 eAs~~~ia~s~IaD~f~~~-~Rs~~~~if--y~~ipvGsglG~vvgs~va~~~~-~--Wr~af~~~avl~vi~~~L~~~f 208 (493)
T KOG1330|consen 135 EASYSPIAPSLIADSFPDD-KRSRVLGIF--YFAIPVGSGLGYVVGSVVASLTF-W--WRWAFRGSAVLGVIVGLLVFLF 208 (493)
T ss_pred hhhhcccchhHhhhcCcch-hhhHHHHHh--hhhcccccceeEEeeeeeccCcc-c--eEEEEEeehHHHHHHHHHHHhh
Confidence 9999999999999999999 999999998 4467778777777666 333333 1 3445555555555555554443
No 240
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.53 E-value=2.6e-05 Score=86.35 Aligned_cols=152 Identities=15% Similarity=0.113 Sum_probs=111.5
Q ss_pred HHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccc-cCchhHHHHHHHH-HHHHHHHHhhccc-----chhHHHHHHHH
Q 005307 274 YSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNR-SYLKPLVFSSIVL-LVGNTLYAMAYDL-----NSIAVLLIGRL 346 (703)
Q Consensus 274 ~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~Grr~~l~~~~~~-~~~~~~~~~a~~~-----~~~~~l~i~r~ 346 (703)
+...+|.+......+...+.....+.++++|.++|+ +||++.++++.++ .+|.++.+++... .....++++-.
T Consensus 14 l~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLa 93 (654)
T TIGR00926 14 FLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLA 93 (654)
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHH
Confidence 345588898888889999999999999999999997 8998888877554 4777777664111 11234566677
Q ss_pred HHhhcCcc--hhhhHHhhccCChh---hhhhHHHHHHHHHHHHHHHHHHhhhhh--ccc-ccccccccccchhHHHHHHH
Q 005307 347 FCGLGSAR--AVNRRYISDCVPLK---LRMRASAGFVSASALGMACGPALACLF--QTN-FKIYKLTFNEDTLPGWVMAL 418 (703)
Q Consensus 347 l~Gi~~g~--~~~~~~i~~~~~~~---~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g-~~~~~~~~~~~~~~f~i~~~ 418 (703)
+.++|.|. +...+...|.++++ +|-..+.++..+.++|.++++.+..++ ..+ +. ...+|...|.+.++
T Consensus 94 Lia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg----~~~~~~~aF~i~~i 169 (654)
T TIGR00926 94 LIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFG----CQDCYPLAFGVPAI 169 (654)
T ss_pred HHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----cCcchHHHHHHHHH
Confidence 77777766 99999999988754 467788899999999999999998888 321 00 01123788888887
Q ss_pred HHHHHHHHHHH
Q 005307 419 LWLVYLLWLWI 429 (703)
Q Consensus 419 ~~~~~~i~~~~ 429 (703)
+.++++++...
T Consensus 170 ~m~ia~lvf~~ 180 (654)
T TIGR00926 170 LMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHH
Confidence 77777655443
No 241
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.49 E-value=1e-06 Score=90.68 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=113.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHhhhhcc----ccchhHHHHHHhhhhhhhhHHHHHHhhhhhh-hhhHHHHHHHH
Q 005307 513 PSVKVQLFVYFMLKYAMEILLAESSVITEHYFI----WSTSRVAIFLACLGLTVLPVNIIVGNYISNI-FEERQVLLASE 587 (703)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r-~g~r~~~~~~~ 587 (703)
+.++.++..-+.--++++++...+..|+...++ ++.+++.-++..++...-.. .++|||++|| +|+|+.+.+|.
T Consensus 21 r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t-~i~GG~laDr~LG~~~tI~lGa 99 (498)
T COG3104 21 RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLT-PIIGGWLADRVLGTRRTIVLGA 99 (498)
T ss_pred chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHH-HHHHHHHHHHhcchhHHHHHHH
Confidence 346667777788889999999999999988877 88888866666654443333 4456699999 59999999999
Q ss_pred HHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCC-cccccchhhhHHhhhhhhhhhccceee
Q 005307 588 IIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRL-SRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 588 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+++++|.+++.... ..+...+.+++++..+|.|..=+...+++.+.+|++. +|-..++.. .+..++|+.++|++.+
T Consensus 100 il~~iGh~~L~~~~-~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~f--Y~~iNiGsl~~p~i~~ 176 (498)
T COG3104 100 ILMAIGHLVLAISS-VSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLF--YMGINIGSLIAPIITG 176 (498)
T ss_pred HHHHHHHHHHhccc-cccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEE--EEEeehHHHHHHHHHH
Confidence 99999977655441 1345667778888889999999999999999999886 333345555 4477899999999554
No 242
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.46 E-value=4.5e-07 Score=80.05 Aligned_cols=104 Identities=14% Similarity=0.157 Sum_probs=80.7
Q ss_pred HhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 005307 556 ACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVM 635 (703)
Q Consensus 556 ~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (703)
+..+++..++....+ ++.||+|+|+.+..+..+..++.++.... .+.+...+..++.+++.+...+...+++.+..
T Consensus 5 ~~~~~~~~~~~~~~g-~~~d~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 80 (141)
T TIGR00880 5 AGYALGQLIYSPLSG-LLTDRFGRKPVLLVGLFIFVLSTAMFALS---SNITVLIIARFLQGFGAAFALVAGAALIADIY 80 (141)
T ss_pred EeehhHHHHHHhhHH-HHHhhcchhHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHC
Confidence 344566677777777 99999999999988877777775544332 34556666777888888888888999999999
Q ss_pred cCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 636 SSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 636 ~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
|++ .+++..+.. .....+|..++|.+.+
T Consensus 81 ~~~-~~~~~~~~~--~~~~~~g~~~~~~~~~ 108 (141)
T TIGR00880 81 PPE-ERGVALGLM--SAGIALGPLLGPPLGG 108 (141)
T ss_pred Chh-hhhHHHHHH--HHhHHHHHHHhHHhHH
Confidence 998 899888887 4477899999998665
No 243
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.44 E-value=1.3e-06 Score=87.13 Aligned_cols=140 Identities=9% Similarity=-0.002 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhcccccc
Q 005307 523 FMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILV 602 (703)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~ 602 (703)
|+.+.........+.+.+++.++.+..+++++......+..+.++..+ ++.+|+|.|+.++.|+.++++++.+.++...
T Consensus 22 Ffl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~-~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~ 100 (422)
T COG0738 22 FFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAG-LLIKKLGYKAGIVLGLLLYAVGAALFWPAAS 100 (422)
T ss_pred HHHHHHHhhcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHH-HHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 333333444555566778888999999999999888888888888877 9999999999999999999999887776544
Q ss_pred ccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 603 PYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
..++..++++.++.+.|.+...+...++++...+++ ....-++.. ..++.+|.++||++++
T Consensus 101 ~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~-~a~~rlnl~--q~fn~lGa~~gp~~g~ 161 (422)
T COG0738 101 SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPE-SAAFRLNLA--QAFNGLGAILGPLLGS 161 (422)
T ss_pred hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCch-hHHHHHHHH--HHhhhhHHHHHHHHHH
Confidence 567778888889999999999999999999999996 444446665 5688999999999776
No 244
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.44 E-value=2.6e-07 Score=102.87 Aligned_cols=135 Identities=18% Similarity=0.116 Sum_probs=106.2
Q ss_pred HHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccc------
Q 005307 528 AMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHIL------ 601 (703)
Q Consensus 528 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~------ 601 (703)
...++.......+++++++++.+.|++.+...++.+++.++++ ++.||.+|++.+.++.++++++.++.....
T Consensus 47 ~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~-~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y 125 (633)
T TIGR00805 47 LYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVS-YFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRY 125 (633)
T ss_pred HHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHH-HhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCc
Confidence 3334444444456778999999999999999999999999888 999999999999999888888876432210
Q ss_pred ----------------------c--------------------ccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCC
Q 005307 602 ----------------------V--------------------PYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRL 639 (703)
Q Consensus 602 ----------------------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (703)
. ...+..++++-++.|+|.+...+...+++.+.+|++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~- 204 (633)
T TIGR00805 126 SYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSK- 204 (633)
T ss_pred cccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCcc-
Confidence 0 012445667888999999999999999999999999
Q ss_pred cccccchhhhHHhhhhhhhhhccceee
Q 005307 640 SRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 640 ~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
.++.+.|++.. ...+|.++|+++++
T Consensus 205 ~~~~~~~i~~~--~~~iG~~lG~llgg 229 (633)
T TIGR00805 205 NSPLYIGILES--IAVFGPAFGYLLGS 229 (633)
T ss_pred ccHHHHHHHHH--HHHhhhHHHHHHHH
Confidence 89999998843 77788888888766
No 245
>PTZ00207 hypothetical protein; Provisional
Probab=98.43 E-value=3e-06 Score=91.94 Aligned_cols=122 Identities=14% Similarity=0.120 Sum_probs=89.0
Q ss_pred hhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccc---cccchhHHHHH
Q 005307 536 SSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHIL---VPYSVPQYVGS 612 (703)
Q Consensus 536 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~ 612 (703)
+...+.+.+|++..+.+.+.++. .....+.++.| ++.||+|+|+++.++.++.+++.++..... ...+.+.+.+.
T Consensus 49 ~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G-~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~ 126 (591)
T PTZ00207 49 ISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYS-FIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVY 126 (591)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHH-HHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 34456777999999999887663 33334455556 999999999999999999888876443321 01356777777
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhh-ccc
Q 005307 613 ALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVI-ADG 663 (703)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~-gp~ 663 (703)
.++.|++.+...+.....+.+.+|++ ||.+.|+... ...+|.++ +++
T Consensus 127 r~l~G~G~~~~~~~~~~~i~~~Fp~~--RG~a~Gi~~~--~~gLGsaI~~~l 174 (591)
T PTZ00207 127 NGLMTLGCMLFDLGAVVTVLSVFPSN--RGAVVAIMKT--FTGLGSAILGSI 174 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChhh--hHHHHHHHHH--HHHHHHHHHHHH
Confidence 77888888877788888888888855 8999999844 66677765 444
No 246
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.42 E-value=1e-06 Score=86.85 Aligned_cols=113 Identities=18% Similarity=0.098 Sum_probs=89.9
Q ss_pred ccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhH
Q 005307 546 WSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEG 625 (703)
Q Consensus 546 ~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (703)
-+....|++-+.++++..+.+..+| .++|++|||.+++++.+..++..++.... .++..++++=++.|+.-+-. +
T Consensus 65 ~~~~yaGflGSsF~ilQ~~sS~~~G-~~SD~yGRkpvll~c~~~va~s~ll~~~S---~~F~afv~aR~l~Gi~kgnl-~ 139 (451)
T KOG2615|consen 65 ASVFYAGFLGSSFSILQFISSPLWG-CLSDRYGRKPVLLACLIGVALSYLLWALS---RNFAAFVLARFLGGIFKGNL-S 139 (451)
T ss_pred ccchhhhhHhhHHHHHHHHhhhhhh-hhhhhhCchHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhhccCch-H
Confidence 3455668888888999999999999 99999999999999998888875554333 45545555566666665543 4
Q ss_pred HHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 626 VNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 626 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+..++++|+++++ .|+..++.+ ....++|.++||.+++
T Consensus 140 v~rAiisdV~sek-~r~l~ms~v--~~a~~lGfilGPmIGg 177 (451)
T KOG2615|consen 140 VIRAIISDVVSEK-YRPLGMSLV--GTAFGLGFILGPMIGG 177 (451)
T ss_pred HHHHHHHhhcChh-hccceeeee--ehhhhcchhhcchhhh
Confidence 7789999999998 999999998 4488899999999887
No 247
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.41 E-value=1.2e-06 Score=85.72 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=92.3
Q ss_pred HHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchh--HHHHHHHHHHhhcCcc-hhhhHHhhccCChh
Q 005307 293 AVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSI--AVLLIGRLFCGLGSAR-AVNRRYISDCVPLK 368 (703)
Q Consensus 293 ~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~--~~l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~ 368 (703)
.+.-+-|.++.+++.||+|||+.+..+++.+ ++.++...+.. +|. .+++.+|++. .|+ .+++.|..|++|..
T Consensus 391 slaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~-rn~~tvllf~arafi---sg~fqvaYvYtPEVyPTa 466 (528)
T KOG0253|consen 391 SLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKT-RNAYTVLLFTARAFI---SGAFQVAYVYTPEVYPTA 466 (528)
T ss_pred HHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHH---hchheEEEEecCcccchh
Confidence 4556778889999999999999999997765 66665555511 222 3345556543 233 78899999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccccchhHHHHHHHHHHHHHHHHHHhcc
Q 005307 369 LRMRASAGFVSASALGMACGPALACLFQTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFR 432 (703)
Q Consensus 369 ~R~~~~~~~~~~~~~G~~lgp~i~~~l~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~ 432 (703)
-|+.+.|.-+.+.-+|.++.|+++-....+- ..+..+.+.+++++.+...+ +|
T Consensus 467 vRatgvGtcSsmaRIggI~~p~iA~~~e~s~----------sl~i~vy~~~~ilagIavcf-fP 519 (528)
T KOG0253|consen 467 VRATGVGTCSSMARIGGIFSPVIAMRAELST----------SLPIFVYGALFILAGIAVCF-FP 519 (528)
T ss_pred hhhcchhhhhhHHhhhhhhhhHHHHHhccce----------eehHHHHHHHHHHHHHHhee-ee
Confidence 9999999999999999999999993333332 45667777777777766655 45
No 248
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.40 E-value=3.5e-06 Score=89.45 Aligned_cols=148 Identities=18% Similarity=0.181 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhh----hhhhHHHHHHH-HHH
Q 005307 515 VKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISN----IFEERQVLLAS-EII 589 (703)
Q Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~----r~g~r~~~~~~-~~~ 589 (703)
+..+..+.+..++++.....+.++|++ .+|.++...++++.+..+.+++...++| +++| |+|||+.++.+ ...
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~-~lg~~~~~~~~i~~~~~l~~~i~~Pi~G-~lSDr~~sr~GRRrp~il~g~~~ 83 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQ-ELGIPHAWASIIWLCGPLSGLLVQPLVG-YLSDRCTSRFGRRRPFIAAGAAL 83 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHHhHee-ehhcCCCCCCCChHHHHHHHHHH
Confidence 445555666677777777777888775 4799999999999999999999999988 9999 59999988765 444
Q ss_pred HHHHHhhcccccc----------c-c---chhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcc--cccchhhhHHhh
Q 005307 590 VCIGILLSFHILV----------P-Y---SVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSR--GTYNGGLLSTEA 653 (703)
Q Consensus 590 ~~i~~~~~~~~~~----------~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~g~~~~~~~ 653 (703)
.+++++++..... . . ..+..+++..+..++.....+...++++|.+|++ +| +.+.+.. ...
T Consensus 84 ~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~-~~~~~~a~~~~--~~~ 160 (477)
T TIGR01301 84 VAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGD-ARRTRIANAYF--SFF 160 (477)
T ss_pred HHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCch-hHHHHHHHHHH--HHH
Confidence 4444333322110 0 0 0133344445556677778888899999999987 44 4456665 446
Q ss_pred hhhhhhhccceeee
Q 005307 654 GTLARVIADGTITL 667 (703)
Q Consensus 654 ~~~g~~~gp~~~~~ 667 (703)
..+|+.+|+.++++
T Consensus 161 ~~lG~ilg~~~g~~ 174 (477)
T TIGR01301 161 MAIGNVLGYAAGAY 174 (477)
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888886653
No 249
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=98.37 E-value=0.00012 Score=75.35 Aligned_cols=377 Identities=12% Similarity=0.039 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHhhhhhccchhHHHHh--cCccchhhhHHHHH-HHH-HHHHHhhhh-hhhccccCchhHHHHHHHHH--
Q 005307 251 LLNLVNTFLYMVNTYVIVPTADNYSLS--LGAAATLCGVIIGS-MAV-AQVFSSVYF-SAWSNRSYLKPLVFSSIVLL-- 323 (703)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~s~~~~g~i~s~-~~l-~~~i~~~~~-G~l~Dr~Grr~~l~~~~~~~-- 323 (703)
.++.+..++-++-.++....+|.+.++ -+.|-++.|...-+ +.. --++-+|+. ...+.|+|||+.-++-+=..
T Consensus 3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g 82 (544)
T PF13000_consen 3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSG 82 (544)
T ss_pred eHHHHHHHHcCcccccccccchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHH
Confidence 344555666666677776778888888 57777777654322 111 122233332 33455799998665543222
Q ss_pred HHHHHHHhhc----------------c---cc--hhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHH
Q 005307 324 VGNTLYAMAY----------------D---LN--SIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSA 380 (703)
Q Consensus 324 ~~~~~~~~a~----------------~---~~--~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~ 380 (703)
+..+..+... . .+ +...+.+..++.-+-.+. .++..+.-.+..+++++.|......+
T Consensus 83 ~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG 162 (544)
T PF13000_consen 83 ILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTCQTVG 162 (544)
T ss_pred HHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHHHHhH
Confidence 2222221111 0 01 112233333333333344 66667766677788888877776666
Q ss_pred HHHHHHHHHHhhhhh-c--cc--c-cccc-----cccccchhHHHHHHHHHHHHHHHHHHhccCCCcccccccccccccc
Q 005307 381 SALGMACGPALACLF-Q--TN--F-KIYK-----LTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANA 449 (703)
Q Consensus 381 ~~~G~~lgp~i~~~l-~--~g--~-~~~~-----~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~ 449 (703)
.++|..++..+--.+ . +. | +..+ ....+| ..+-+.+.++..+...++-+|.+...... +.+..
T Consensus 163 ~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~y---l~fwg~~~l~~T~~v~~~k~E~~~~~~~~-~~~~~-- 236 (544)
T PF13000_consen 163 QTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGY---LKFWGWVFLIVTILVAFFKKEKPHSESLP-KIEPI-- 236 (544)
T ss_pred hhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHH---HHHHHHHHHHHHHHHheEeecccccccCc-ccccc--
Confidence 666666665554444 1 10 0 0000 111122 12222333333444444455554322110 00000
Q ss_pred ccccccccCCCCCCcccccchhcccCCccccccCCCCCCCCc-ccccccCCCcccHHHHHHhh-CcchHHHHHHHHHHHH
Q 005307 450 GLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDD-EDSKITHRPVTSIMSAYRLL-TPSVKVQLFVYFMLKY 527 (703)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 527 (703)
+..+ + +.++...+ .++.+ ...++.......++.+++.. .|++..++++.+..-+
T Consensus 237 -----~~~~-~-----------~~~~~~~~-------~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~Ki 292 (544)
T PF13000_consen 237 -----NKSD-G-----------KSKEISIE-------YDESDVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKI 292 (544)
T ss_pred -----cccc-c-----------ccccccee-------cccccccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 0000 0 00000000 00000 00011112234455555554 7888888888888888
Q ss_pred HHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhh--------------------------hHH
Q 005307 528 AMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFE--------------------------ERQ 581 (703)
Q Consensus 528 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g--------------------------~r~ 581 (703)
++........+-+.+ .|++..+.+++..+.-=..++...+++.|-.++-. .-+
T Consensus 293 gF~a~da~T~LKLlE-kG~~KE~LAl~~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~~~~l~g~~g~L~ 371 (544)
T PF13000_consen 293 GFQANDAVTSLKLLE-KGLSKEDLALLVLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKIIRLLVGDAGALR 371 (544)
T ss_pred ccccchhhhHHHHHH-cCCCHHHhHHHHHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccchhhhhhccchhhH
Confidence 887777666666665 59998887765544444444455555533322211 012
Q ss_pred HHHHHHHH----HHHHHhhccccc--cccch---hHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHh
Q 005307 582 VLLASEII----VCIGILLSFHIL--VPYSV---PQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTE 652 (703)
Q Consensus 582 ~~~~~~~~----~~i~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 652 (703)
..+.++.. ..++..+....+ ...+. ..+++..++..+.....+...++.-+++.+|. .-|+++.+.|.
T Consensus 372 ~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~-IGGTYMTLLNT-- 448 (544)
T PF13000_consen 372 PWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPA-IGGTYMTLLNT-- 448 (544)
T ss_pred HHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc-cchHHHHHHHH--
Confidence 22222221 111111111111 11111 22222233334445566777788888999888 78888888854
Q ss_pred hhhhhhhhc
Q 005307 653 AGTLARVIA 661 (703)
Q Consensus 653 ~~~~g~~~g 661 (703)
..++|+.--
T Consensus 449 vSNLGGtWP 457 (544)
T PF13000_consen 449 VSNLGGTWP 457 (544)
T ss_pred HHhcCCCch
Confidence 666665443
No 250
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.33 E-value=2.5e-06 Score=91.94 Aligned_cols=123 Identities=10% Similarity=0.039 Sum_probs=100.3
Q ss_pred HhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhc-------ccchhHHHHHHHHH
Q 005307 276 LSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAY-------DLNSIAVLLIGRLF 347 (703)
Q Consensus 276 ~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~-------~~~~~~~l~i~r~l 347 (703)
..+|.++..+|++.+...++.+++..+.+++.+|++.|+++.++.+.. ++.+...+.. ..++.+.++..-++
T Consensus 281 ~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l 360 (468)
T TIGR00788 281 QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSII 360 (468)
T ss_pred ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHH
Confidence 468999999999999999999999999999999999999988886654 5554432110 00334455666778
Q ss_pred HhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccc
Q 005307 348 CGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTN 398 (703)
Q Consensus 348 ~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g 398 (703)
.+++.+. .+...++.+..|++.+|...+++....++|..+|+.+++.+ ..|
T Consensus 361 ~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 361 AEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8888777 67789999999999999999999999999999999999998 444
No 251
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.30 E-value=8.5e-06 Score=84.76 Aligned_cols=151 Identities=16% Similarity=0.243 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HH
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VG 325 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~ 325 (703)
+.+.+.++..++...+..+...+...|.+. +|.+....++.......+.+++.+++..+++|+|+|+++.++.+.. ++
T Consensus 236 rp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~ 315 (467)
T COG2211 236 RPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVG 315 (467)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHH
Confidence 444555556666667777776666666655 5777777778888888888888999999999999999999997655 88
Q ss_pred HHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCCh-------hhhhhHHHHHHHHHHHHHHHHHHhhhhh-
Q 005307 326 NTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPL-------KLRMRASAGFVSASALGMACGPALACLF- 395 (703)
Q Consensus 326 ~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~-------~~R~~~~~~~~~~~~~G~~lgp~i~~~l- 395 (703)
.++..+.. .++.+++++..++.++|.+. +...++++|..+- +.-|...|....+.=+|..++..+.|+.
T Consensus 316 ~~~~~f~~-~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L 394 (467)
T COG2211 316 YLLLYFTP-AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWIL 394 (467)
T ss_pred HHHHHhhc-CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777762 35789999999999999887 7888888887653 2346777788888888888888777776
Q ss_pred -cccc
Q 005307 396 -QTNF 399 (703)
Q Consensus 396 -~~g~ 399 (703)
..|+
T Consensus 395 ~~~Gy 399 (467)
T COG2211 395 GAIGY 399 (467)
T ss_pred HHcCC
Confidence 5555
No 252
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.28 E-value=1.3e-05 Score=86.62 Aligned_cols=150 Identities=13% Similarity=0.099 Sum_probs=97.8
Q ss_pred HhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHh
Q 005307 539 ITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFV 618 (703)
Q Consensus 539 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (703)
+.....|-+ ....++.....+...++..++| +++|.+|||..++.+.++..+|.++.... .+...++.+..+.|+
T Consensus 69 ~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G-~LSDlfGRr~~~i~g~~l~vvG~Iv~atA---~~~~~~iag~~l~Gv 143 (599)
T PF06609_consen 69 YINADIGGS-DNWSWFSTAWTLASAVSFPFVG-RLSDLFGRRYFFIIGSLLGVVGSIVCATA---QNMNTFIAGMVLYGV 143 (599)
T ss_pred HHHHhcCCC-ccchHHHHHHHHHHHHHHHhhH-HHHHHhcchHHHHHHHHHHHhHHHHhhcC---CcHHHHHHHHHHHHH
Confidence 444445654 4445566666777777888888 99999999999999999999997665444 677888999999999
Q ss_pred hhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceeeeeccccCCcccccchhHHHHHHHHHHHHHHHh
Q 005307 619 AAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTITLSGYLGESRLLNVTLLPSLFICISSIVATCIT 698 (703)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (703)
|.+... .....++|.+|.+ .|+...+.. ..........+|. +...+.....|.|.+..+.+...+.++..+++
T Consensus 144 gaG~~~-~~~~~isEl~p~k-~R~~~~~~~--~~~~i~~~~~~~~---ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~f 216 (599)
T PF06609_consen 144 GAGVQE-LAALAISELVPNK-WRGLGLAIA--SIPFIITTWISPL---IAQLFAAHSGWRWIFYIFIIWSGIALVLIFFF 216 (599)
T ss_pred hhHHHH-HHHHHHHHhcccc-hhhhHhHHH--HHHHHhhhcccHH---HHHHhccCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 876554 4556689999988 676433332 2122222334444 22223333335556666666666666655555
Q ss_pred hc
Q 005307 699 YN 700 (703)
Q Consensus 699 ~~ 700 (703)
|+
T Consensus 217 Y~ 218 (599)
T PF06609_consen 217 YF 218 (599)
T ss_pred hC
Confidence 54
No 253
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.28 E-value=3.3e-06 Score=64.74 Aligned_cols=67 Identities=10% Similarity=0.182 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHH
Q 005307 253 NLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSS 319 (703)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~ 319 (703)
+-...++...+.+...|.+|.+.++.|.++.++|.+.++..+...+++|++|.++||+|+++.++..
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~ 71 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLG 71 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence 3445666777888899999999999999999999999999999999999999999999987766544
No 254
>PRK11462 putative transporter; Provisional
Probab=98.27 E-value=2.7e-05 Score=83.97 Aligned_cols=144 Identities=14% Similarity=0.115 Sum_probs=90.2
Q ss_pred HHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHH-HHHHHHHHHhhcc
Q 005307 256 NTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIV-LLVGNTLYAMAYD 334 (703)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~-~~~~~~~~~~a~~ 334 (703)
..++..+...+.......+......++...+++.+++.++.+++.+++++++||+|+|+++..+.+ ..+..++..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~y~~~y~~g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~- 314 (460)
T PRK11462 236 LTIFNILAVCVRGGAMMYYVTWILGTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVP- 314 (460)
T ss_pred HHHHHHHHHHHHHhHhhhhhhhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc-
Confidence 334444444444334444444433344456677788889999999999999999999988765433 333223332321
Q ss_pred cchhHHHHHHHHHHhhcCcc--hhhhHHhhccCC-------hhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccccc
Q 005307 335 LNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVP-------LKLRMRASAGFVSASALGMACGPALACLF--QTNFK 400 (703)
Q Consensus 335 ~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~-------~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~ 400 (703)
..+.+.+++.-++.|++.+. +...++++|..+ .+.-|..++....+.-+|..+|+.++|++ ..|+.
T Consensus 315 ~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy~ 391 (460)
T PRK11462 315 MQASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYD 391 (460)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 12333445555667777655 555677777665 23335556777788999999999999887 44663
No 255
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.18 E-value=4e-05 Score=67.82 Aligned_cols=105 Identities=10% Similarity=0.025 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccC
Q 005307 288 IIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLLVGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCV 365 (703)
Q Consensus 288 i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~ 365 (703)
-.++......+++++.+.+.+++|.|+.++++.++........+- ++.+.++.+-++.|++.+. +....++.+..
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~---~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s 118 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY---PNSYTLYPASALLGFGAALLWTAQGTYLTSYS 118 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence 445566667777888888999999999999998877555555555 7899999999999999998 88889999999
Q ss_pred ChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 366 PLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 366 ~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
++++|++..+++-.....+.++|.++...+
T Consensus 119 ~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 119 TEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred CHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888888888887766555
No 256
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.16 E-value=3.1e-05 Score=82.25 Aligned_cols=175 Identities=14% Similarity=0.043 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCch--------hHH-H
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLK--------PLV-F 317 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr--------~~l-~ 317 (703)
..++.++++.+....+...+...+|.|.++ +|.+..+.|++.++..+...+..+++|.++|+.-+| +++ .
T Consensus 258 ~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~ 337 (466)
T KOG2532|consen 258 PPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNT 337 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHh
Confidence 567888999999999999999999999998 799999999999999999999999999999986542 222 1
Q ss_pred HHHHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 318 SSIVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 318 ~~~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
++.... ++.++.++....+....+++.-+..|+.+.. +....-..|. .|++-+..+|+.+....++.+++|.+.+.+
T Consensus 338 i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~ 416 (466)
T KOG2532|consen 338 IAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGII 416 (466)
T ss_pred HHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeE
Confidence 222222 4444444441112222222222222333222 2222222232 467789999999999999999999999998
Q ss_pred -cccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 005307 396 -QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWI 429 (703)
Q Consensus 396 -~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~ 429 (703)
.-+ ..++|+++|++.+++.++..++..+
T Consensus 417 ~~~~------t~~eW~~VF~i~a~i~~~~~i~f~~ 445 (466)
T KOG2532|consen 417 VTDN------TREEWRIVFLIAAGILIVGNIIFLF 445 (466)
T ss_pred eCCC------CHHHHHHHHHHHHHHHHHhchheeE
Confidence 321 2345699999999888877754443
No 257
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.16 E-value=9.2e-06 Score=62.66 Aligned_cols=78 Identities=12% Similarity=0.156 Sum_probs=68.9
Q ss_pred HHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhH
Q 005307 261 MVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIA 339 (703)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~ 339 (703)
+++...+.|.+|.++++.++|.++.|++.++..+|+++|++..+.+.++..+++++..+++.. +..+.+++. ++.+
T Consensus 5 GigRFayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~---~~~~ 81 (85)
T PF06779_consen 5 GIGRFAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT---HSFW 81 (85)
T ss_pred hhHHHHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH---hchH
Confidence 456667889999999999999999999999999999999999999999988888888887765 888999988 7766
Q ss_pred HH
Q 005307 340 VL 341 (703)
Q Consensus 340 ~l 341 (703)
.+
T Consensus 82 ~w 83 (85)
T PF06779_consen 82 LW 83 (85)
T ss_pred HH
Confidence 54
No 258
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.10 E-value=8.7e-05 Score=81.40 Aligned_cols=181 Identities=12% Similarity=0.047 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HH
Q 005307 247 FTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VG 325 (703)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~ 325 (703)
.+.+..+.+..|....+........+.+.+..|.+... .+...+..+...++..+.+.+.||+|||++++.+.+.. ++
T Consensus 294 ~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~ 372 (513)
T KOG0254|consen 294 KRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSIC 372 (513)
T ss_pred HHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHH
Confidence 33444555555555667777777788888887776443 55555666677777788899999999999999987644 66
Q ss_pred HHHHHhhccc-----------chhHHHHHHHHHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 005307 326 NTLYAMAYDL-----------NSIAVLLIGRLFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALAC 393 (703)
Q Consensus 326 ~~~~~~a~~~-----------~~~~~l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~ 393 (703)
.++++..... ..+....++-++..+..|. ++...+.+|.+|.+-|+++.++......+...+-....-
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~ 452 (513)
T KOG0254|consen 373 LVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFP 452 (513)
T ss_pred HHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 6666544111 1112233333444555666 777788999999999999988766654444333222111
Q ss_pred hh--cccccccccccccchhHHHHHHHHHHHHHH-HHHHhccCCCccc
Q 005307 394 LF--QTNFKIYKLTFNEDTLPGWVMALLWLVYLL-WLWISFREPPLET 438 (703)
Q Consensus 394 ~l--~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i-~~~~~l~e~~~~~ 438 (703)
.+ ..++ ...|+..+..+.+..+ ..++++||+....
T Consensus 453 ~~~~~~~~----------~~~f~~f~~~~~~~~~~fv~~~~pETkg~s 490 (513)
T KOG0254|consen 453 FITEALGI----------GGTFGYFGGICLLSLIIFVFFFVPETKGLT 490 (513)
T ss_pred HHHHhccc----------cchHHHHHHHHHHHHHHHheEEcccCCCCc
Confidence 12 2222 3556666666666665 6777899987643
No 259
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.08 E-value=9.7e-06 Score=82.12 Aligned_cols=186 Identities=11% Similarity=-0.023 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhH--------HHHHH-HHHHHHHhhhhhhhccccCchhHHHH
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGV--------IIGSM-AVAQVFSSVYFSAWSNRSYLKPLVFS 318 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~--------i~s~~-~l~~~i~~~~~G~l~Dr~Grr~~l~~ 318 (703)
+.++..+...|+..+.++........+...+|..+..... ...+. .++.+.|.++...++|+.|||++.+.
T Consensus 304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~ 383 (538)
T KOG0252|consen 304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM 383 (538)
T ss_pred HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence 5556666677777777766666677777777655443333 11111 12233356677888999999999999
Q ss_pred HHHHH-HHHHHHHhhcc-cchhHHHHHHHHHHhhcCcc---hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 005307 319 SIVLL-VGNTLYAMAYD-LNSIAVLLIGRLFCGLGSAR---AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALAC 393 (703)
Q Consensus 319 ~~~~~-~~~~~~~~a~~-~~~~~~l~i~r~l~Gi~~g~---~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~ 393 (703)
+.++. +..+..+..+. ..+-..+++...+..+.+.. .....+-+|.+|.+-|+...|+..++.-+|.++|...-.
T Consensus 384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~ 463 (538)
T KOG0252|consen 384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFL 463 (538)
T ss_pred hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhh
Confidence 97755 77777777753 23444455555555555433 455566789999999999999999999999999988777
Q ss_pred hh-cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccc
Q 005307 394 LF-QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLET 438 (703)
Q Consensus 394 ~l-~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~ 438 (703)
++ .... +..-+.++++++.+.+..+..+..+ ++||+....
T Consensus 464 ~~t~~~y----p~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~~ 504 (538)
T KOG0252|consen 464 YLTDHNY----PPNIGVRNVFIILAGCMLLGILFTL-LIPETKGKS 504 (538)
T ss_pred HhhhccC----CccccchHHHHHHHHHHHHhHheeE-EeecccccC
Confidence 77 3111 0112348999999988887775544 578887643
No 260
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=97.90 E-value=0.03 Score=58.18 Aligned_cols=146 Identities=10% Similarity=0.040 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHHhc---CccchhhhHHHHHHHH-HHHHHhhhhhhhccccCchhHHHHHHH
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSL---GAAATLCGVIIGSMAV-AQVFSSVYFSAWSNRSYLKPLVFSSIV 321 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~s~~~~g~i~s~~~l-~~~i~~~~~G~l~Dr~Grr~~l~~~~~ 321 (703)
-+..++.+.+..++..+.++..-+. -+.+ ..++..++++-+...+ ++++..++.++++++.-|.+++.+.+.
T Consensus 25 E~~kflpl~Ll~f~I~~ny~~lR~l----KDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~ 100 (509)
T COG3202 25 ELKKFLPLALLFFCILFNYNLLRSL----KDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILG 100 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----hhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 3555566666666666666554333 2333 3567788888888888 778889999999999999888766554
Q ss_pred HH-HHHHHHHhhcc-------------------cc----------hhHHHHHHHHHHhhcCcc---hhhhHHhhccCChh
Q 005307 322 LL-VGNTLYAMAYD-------------------LN----------SIAVLLIGRLFCGLGSAR---AVNRRYISDCVPLK 368 (703)
Q Consensus 322 ~~-~~~~~~~~a~~-------------------~~----------~~~~l~i~r~l~Gi~~g~---~~~~~~i~~~~~~~ 368 (703)
.+ ...+++++... .+ +.|..-+..++.=+-+.. -.-.....|++..+
T Consensus 101 ~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~ 180 (509)
T COG3202 101 FFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIE 180 (509)
T ss_pred HHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44 44444444310 01 113322333333222222 23456678899999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 369 LRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 369 ~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
+-.|.+++++.+.+++..++..+..++
T Consensus 181 eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 181 EAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988887777
No 261
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=97.90 E-value=0.012 Score=62.79 Aligned_cols=148 Identities=14% Similarity=0.149 Sum_probs=88.8
Q ss_pred hHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHH-HHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 005307 247 FTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAV-AQVFSSVYFSAWSNRSYLKPLVFSSIVLL-V 324 (703)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l-~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~ 324 (703)
++.++.+.+..|+..+++++.-..=..+.-. ...++.+..+-....+ +.++...+..+++++++|.+++-+.++.+ .
T Consensus 23 ~~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt-~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~ 101 (491)
T PF03219_consen 23 LKKFLPLALMFFFILFNYTILRDLKDTLVVT-AQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLG 101 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCeEEEe-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4555666666666666665543221111100 2255666666665555 44566788999999999988876654433 3
Q ss_pred HHHHHHhh-cc-----cc----------------------hhHHHHHHHHHHhhcCcc--h-hhhHHhhccCChhhhhhH
Q 005307 325 GNTLYAMA-YD-----LN----------------------SIAVLLIGRLFCGLGSAR--A-VNRRYISDCVPLKLRMRA 373 (703)
Q Consensus 325 ~~~~~~~a-~~-----~~----------------------~~~~l~i~r~l~Gi~~g~--~-~~~~~i~~~~~~~~R~~~ 373 (703)
...++++. ++ .+ +.|...+..++.-+-+.. + .-..+..|+++.++-.|.
T Consensus 102 fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRf 181 (491)
T PF03219_consen 102 FFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRF 181 (491)
T ss_pred HHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 33333322 10 01 112222333333332222 2 356788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 005307 374 SAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 374 ~~~~~~~~~~G~~lgp~i~~~l 395 (703)
.+++..+.++|.+++..+..++
T Consensus 182 Ypl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 182 YPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888877777
No 262
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.84 E-value=2e-07 Score=100.88 Aligned_cols=166 Identities=12% Similarity=0.070 Sum_probs=107.0
Q ss_pred HhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHH---hhcccc-
Q 005307 262 VNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYA---MAYDLN- 336 (703)
Q Consensus 262 ~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~---~a~~~~- 336 (703)
.+........+.+.+..+.+.. -+......+...++.++...+.||+|||++++.+.+.. ++.+..+ ......
T Consensus 267 ~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 344 (451)
T PF00083_consen 267 SGINFIFYYSPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSS 344 (451)
T ss_pred cccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3434444455666677776665 22223334555667777789999999999988886543 4444443 111111
Q ss_pred ---hhHHHHHHHH-HHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccc
Q 005307 337 ---SIAVLLIGRL-FCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNED 409 (703)
Q Consensus 337 ---~~~~l~i~r~-l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~ 409 (703)
++..+....+ ..+++.|. ++...+.+|.+|.+.|+++.++......+|..++|.+...+ ..+-
T Consensus 345 ~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~---------- 414 (451)
T PF00083_consen 345 SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGG---------- 414 (451)
T ss_pred cccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------
Confidence 2222222222 22333444 77778899999999999999999988888888888877666 3331
Q ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 005307 410 TLPGWVMALLWLVYLLWLWISFREPPLETK 439 (703)
Q Consensus 410 ~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~ 439 (703)
...+++.++++++..++.++++||+.....
T Consensus 415 ~~~~~i~~~~~~i~~i~~~~~lpET~g~~l 444 (451)
T PF00083_consen 415 WGVFLIFAGVCLIAIIFVYFFLPETKGKTL 444 (451)
T ss_pred cccchhhHHHHHHHHhheeEEEeeCCCCCH
Confidence 355677777777777788888999986443
No 263
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=97.74 E-value=0.00032 Score=67.56 Aligned_cols=123 Identities=17% Similarity=0.093 Sum_probs=84.5
Q ss_pred hhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccc----cccchhHHH
Q 005307 535 ESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHIL----VPYSVPQYV 610 (703)
Q Consensus 535 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~ 610 (703)
.+..-+.+.+|++..+...+-....++..+ ++..| .+.|++|++.++.+|.+...+|+.+.+... ...+.|.+.
T Consensus 23 ~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G-~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~ 100 (250)
T PF06813_consen 23 AYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAG-LLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMC 100 (250)
T ss_pred hhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHH-HHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHH
Confidence 345566778999999998887777777665 45556 999999999999999999999987543321 113445554
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccc
Q 005307 611 GSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADG 663 (703)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~ 663 (703)
+..++.+.+.............+.+|.+ ||++.|+.-+ ...+++.+-..
T Consensus 101 ~~~~l~~~s~~~~~ta~lvt~~~NFP~~--RG~vvgilk~--~~GLSaai~t~ 149 (250)
T PF06813_consen 101 LFLFLGGNSSCWFNTASLVTCVRNFPRS--RGTVVGILKG--FFGLSAAIFTQ 149 (250)
T ss_pred HHHHHHcccHHHhhhHHHHHHHHhCccc--cCceehhhhH--HHHhHHHHHHH
Confidence 4445545554455556666666888865 9999999744 44455555444
No 264
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.00032 Score=74.95 Aligned_cols=149 Identities=11% Similarity=0.057 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccc----cCchhHHHHHHHH
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNR----SYLKPLVFSSIVL 322 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr----~Grr~~l~~~~~~ 322 (703)
..++...++.++.....+.....+|.+.++ .|.|..+.+.+...+.++.+++.+++|+++|| ..+|..+...+.+
T Consensus 273 p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~ 352 (495)
T KOG2533|consen 273 PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCL 352 (495)
T ss_pred hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 456677777888888777777888999998 56899999999999999999999999999999 5666666655443
Q ss_pred H--HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhh-hhhHHHHHHHHHHHHHHHHHH-hhhhh-
Q 005307 323 L--VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKL-RMRASAGFVSASALGMACGPA-LACLF- 395 (703)
Q Consensus 323 ~--~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~-R~~~~~~~~~~~~~G~~lgp~-i~~~l- 395 (703)
. ++.+..... ++......+-+..+.+.+. +.+...+.+...+.. |-...+.+..+.+.+.+++|. .-+..
T Consensus 353 ~~~~g~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~a 429 (495)
T KOG2533|consen 353 YAIIGAISLLAA---AVLPGAYGAFLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDA 429 (495)
T ss_pred HHHHHHHHHHhh---ccchHHhHHHHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccC
Confidence 3 554554444 3344333333333333333 677777777665444 444444555455444444433 33333
Q ss_pred -cccc
Q 005307 396 -QTNF 399 (703)
Q Consensus 396 -~~g~ 399 (703)
.++|
T Consensus 430 p~y~~ 434 (495)
T KOG2533|consen 430 PRYGW 434 (495)
T ss_pred cchhh
Confidence 3455
No 265
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=97.61 E-value=0.0018 Score=71.37 Aligned_cols=164 Identities=17% Similarity=0.066 Sum_probs=105.7
Q ss_pred hhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHH
Q 005307 263 NTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVL 341 (703)
Q Consensus 263 ~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l 341 (703)
...+....++.....+|.+......+... .........+...|++|||.....+.+.. ++.++.++.......+..
T Consensus 333 ~~~~~y~gl~~~~~~lg~~~~~~~~~~~~---~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (521)
T KOG0255|consen 333 VFSLVYYGLSLNVSGLGGNIYLNFTLSGL---VELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLH 409 (521)
T ss_pred HHhHHHHhhhhhhhhcCchHHHHHHHHHH---HHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 33334344455555566554333333333 44444455588999999999999997765 888888877221121234
Q ss_pred HHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccccccchhHHHHHHH
Q 005307 342 LIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKIYKLTFNEDTLPGWVMAL 418 (703)
Q Consensus 342 ~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~~~~~~~~~~f~i~~~ 418 (703)
.+...+..++.+. .....+.+|.+|...|..+.+.......+|.+++|.+-... .+.. ...+.+.+.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~----------~~~~~~~~~ 479 (521)
T KOG0255|consen 410 WILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFP----------LLGLILFGW 479 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----------cchHHHHHH
Confidence 4444444444333 55688999999999999999999999999999999988776 3221 222233355
Q ss_pred HHHHHHHHHHHhccCCCcccc
Q 005307 419 LWLVYLLWLWISFREPPLETK 439 (703)
Q Consensus 419 ~~~~~~i~~~~~l~e~~~~~~ 439 (703)
++.+..++..+++||+.....
T Consensus 480 ~~~l~~~~~~~~lpet~~~~l 500 (521)
T KOG0255|consen 480 LALLLGLLSLLLLPETKGKPL 500 (521)
T ss_pred HHHHHHHHHHhcCcccCCCCC
Confidence 555566566677999876443
No 266
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=97.59 E-value=0.00023 Score=74.54 Aligned_cols=150 Identities=15% Similarity=0.099 Sum_probs=98.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHhhh-hccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhh-HHHHHHHHHHH
Q 005307 513 PSVKVQLFVYFMLKYAMEILLAESSVITEH-YFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEE-RQVLLASEIIV 590 (703)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~-r~~~~~~~~~~ 590 (703)
+.+++..+..++.......+....-+|.++ ..+-+..-.|++.+...++.++++++.+ +...|.+. |+.++.|.+++
T Consensus 34 rsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~-~Ws~k~~~~k~Pli~s~ii~ 112 (488)
T KOG2325|consen 34 RSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFG-IWSNKTGSVKKPLIVSFLIA 112 (488)
T ss_pred HhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhc-ccccccCCcccCHHHHHHHH
Confidence 345566666666666665555555556654 2455666779999999999999999988 77777764 67778888888
Q ss_pred HHHHhhccc--cccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceeee
Q 005307 591 CIGILLSFH--ILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTITL 667 (703)
Q Consensus 591 ~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~~ 667 (703)
.+|.++... ..++...+.++++-++.|+|.+.. ....+++++....+ .|-++++.... ...+|.++||.+...
T Consensus 113 ~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~~-dR~rA~a~~~~--~~vlg~ilGp~~q~~ 187 (488)
T KOG2325|consen 113 IIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIADASTVE-DRPRAFAATSG--GFVLGIILGPTIQLA 187 (488)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHhccCcc-chHHHHHHhhh--HHHHHHHHhHHHHHH
Confidence 888765422 211225666777777777776543 45667887755555 45555665522 345666777665543
No 267
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.57 E-value=0.00045 Score=53.00 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHH
Q 005307 517 VQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEII 589 (703)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~ 589 (703)
.+-..+++...+...+..++|.|+.+ .|+++.++|++.++..+...++..++| +++||.++++..+.+..+
T Consensus 4 ~lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g-~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 4 PLKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWG-FLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCccHHHHHHHHH
Confidence 34456677777788888889999986 799999999999999999999999999 999999999887766544
No 268
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.56 E-value=0.00086 Score=71.10 Aligned_cols=117 Identities=14% Similarity=0.093 Sum_probs=104.6
Q ss_pred HhcCccchhhhHHHHHHHHHHHHHhhhhh-hhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCc
Q 005307 276 LSLGAAATLCGVIIGSMAVAQVFSSVYFS-AWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSA 353 (703)
Q Consensus 276 ~~~g~s~~~~g~i~s~~~l~~~i~~~~~G-~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g 353 (703)
..++.+..+.+...+...+...+++++.. .+...+|-|+++..|+..- +...+++++ ++.|+++...++.++...
T Consensus 270 ~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~---~~~w~~~~~~v~~~~~~~ 346 (463)
T KOG2816|consen 270 AKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA---TETWMMFAAGVVVALAGI 346 (463)
T ss_pred eecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh---ccchhhhHHHHHHHhhcc
Confidence 34899999999988888888888888877 6677789888888887765 999999999 999999999999999988
Q ss_pred c-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 354 R-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 354 ~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
. +...+.++-+.+++++|+++++.....++..+++|.+-+.+
T Consensus 347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i 389 (463)
T KOG2816|consen 347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNI 389 (463)
T ss_pred hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHH
Confidence 8 99999999999999999999999999999999999987766
No 269
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=97.44 E-value=0.041 Score=60.22 Aligned_cols=174 Identities=13% Similarity=-0.017 Sum_probs=118.7
Q ss_pred ccchhHHHHHHHHHHHHHHHhh-hhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccc-cCchhHHHHHH
Q 005307 243 QRYHFTSLLLNLVNTFLYMVNT-YVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNR-SYLKPLVFSSI 320 (703)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~Grr~~l~~~~ 320 (703)
+...|+....++....+..+++ ++....+..+...++.+...+.-..+.+.-...+.++.++.++|- +||-+++.++.
T Consensus 32 ~~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s 111 (571)
T KOG1237|consen 32 KTGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGS 111 (571)
T ss_pred eechhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3445666666666666666654 344455566667788888888888888888889999999999997 78888877764
Q ss_pred H-HHHHHHHHHhhcc-------------c------ch---hHHHHHHHHHHhhcCcc--hhhhHHhhccCC---hhh---
Q 005307 321 V-LLVGNTLYAMAYD-------------L------NS---IAVLLIGRLFCGLGSAR--AVNRRYISDCVP---LKL--- 369 (703)
Q Consensus 321 ~-~~~~~~~~~~a~~-------------~------~~---~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~---~~~--- 369 (703)
+ ..+|.++..++.. . ++ ...++.+.-+..+|.|. +...++-+|-++ +++
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~ 191 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKG 191 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhC
Confidence 4 3355433332200 0 01 23566666777788777 888899999887 322
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHHHHHHHHHH
Q 005307 370 RMRASAGFVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALLWLVYLLW 426 (703)
Q Consensus 370 R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~ 426 (703)
+...+.++....++|..++-.+-.+. ..|| .+.|.+..++.++++++
T Consensus 192 ~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w----------~lgf~i~~~~~~lai~i 240 (571)
T KOG1237|consen 192 IPSFFNWFYFSQNGGALLAQTVLVYIQDNVGW----------KLGFGIPTVLNALAILI 240 (571)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhhcccc----------eeeccHHHHHHHHHHHH
Confidence 23677788888999999988888777 6777 66666666665555433
No 270
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=97.42 E-value=0.013 Score=59.91 Aligned_cols=129 Identities=9% Similarity=0.027 Sum_probs=61.9
Q ss_pred HHHHHhhhhHHhhhhcccc---chhHHHHHHh-hhhhhhhHHHHHHhhhhhhhhhHHHHHHHHH-HHHHHHhh--cc--c
Q 005307 529 MEILLAESSVITEHYFIWS---TSRVAIFLAC-LGLTVLPVNIIVGNYISNIFEERQVLLASEI-IVCIGILL--SF--H 599 (703)
Q Consensus 529 ~~~~~~~~~~~~~~~~g~s---~~~~g~~~~~-~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~-~~~i~~~~--~~--~ 599 (703)
+......+|-+..+..+-. ....-+...+ ..+...+|..... ++... ++|.+...... ...+-++. -. .
T Consensus 259 y~VTLsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~-~~~~~-~~r~l~i~v~lR~lfiPlF~~cn~~~~ 336 (406)
T KOG1479|consen 259 YFVTLSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAA-LLTWP-DPRKLTIPVLLRLLFIPLFLLCNYPPL 336 (406)
T ss_pred eeeeeEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhh-cccCC-CCceehHHHHHHHHHHHHHHHhccCCC
Confidence 3344445666665543211 2222333444 5666667755544 44333 23333222211 12222111 11 0
Q ss_pred cccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhcc
Q 005307 600 ILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIAD 662 (703)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp 662 (703)
...-.+-+.++....++++..|-.....+.+.++.+|++ .+- +.|.+.. +.-..|.++|.
T Consensus 337 ~v~~~~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~-e~e-~aG~~m~-~fl~~Gl~~G~ 396 (406)
T KOG1479|consen 337 PVVFESDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPS-EKE-AAGNLMV-FFLVGGLALGS 396 (406)
T ss_pred CceecCchHHHHHHHHHHhccchHhhheehhcCCCCChH-HHH-HHHHHHH-HHHHHHHHHhh
Confidence 001134456667777778888877778888888888877 333 3444422 23334444443
No 271
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.34 E-value=0.0035 Score=64.07 Aligned_cols=124 Identities=13% Similarity=0.077 Sum_probs=78.7
Q ss_pred HHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccc---cchh--HHHHH
Q 005307 538 VITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVP---YSVP--QYVGS 612 (703)
Q Consensus 538 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~---~~~~--~~~~~ 612 (703)
.+....|| +...+-+...++.++.++.++... |+.|++|-|...+++..+.++|..+=.....+ ...+ ....+
T Consensus 69 n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~m-w~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~G 146 (480)
T KOG2563|consen 69 NYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAM-WILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTG 146 (480)
T ss_pred HHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHH-HhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHh
Confidence 35556677 556666777788888888888877 99999999999999999999987642222111 3334 55566
Q ss_pred HHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 613 ALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
..+.+.+.......-.-+..-.+|++ +|.++..+. .+.+.+|.++|-++..
T Consensus 147 q~iaa~Aq~Fim~lPskiA~~WF~~~-qra~A~~~~--v~~n~LGvavg~llpp 197 (480)
T KOG2563|consen 147 QSIAAAAQPFILGLPSKIAAVWFPPD-QRAIATVLG--VMGNPLGVAVGFLLPP 197 (480)
T ss_pred HHHHHHhhhHhhccccHHHHhhCCcc-hhhhhhhHH--HhcchHHHHHHhhccc
Confidence 66666655544444334455556776 676655543 3344455555544433
No 272
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.31 E-value=0.001 Score=74.00 Aligned_cols=136 Identities=10% Similarity=0.012 Sum_probs=89.9
Q ss_pred HHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhh-hhhHHHHHHHHHHHHHHHhhccccccc---
Q 005307 528 AMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNI-FEERQVLLASEIIVCIGILLSFHILVP--- 603 (703)
Q Consensus 528 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r-~g~r~~~~~~~~~~~i~~~~~~~~~~~--- 603 (703)
+++++.+.+..|+...+|++...+..++.......-+...+.+ ++.|+ +|+++.+.++.++..+|..++.....+
T Consensus 2 syYGm~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg-~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 2 SYYGMRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGA-IIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred ceeecHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 3455566677788888899988877666655555444444444 78875 799999999988888887654332111
Q ss_pred --cchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--cccccchhhhHHhhhhhhhhhccceee
Q 005307 604 --YSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRL--SRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 604 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
......++++.+..+|.+.+-|...+...+.++++. .+-+....+ ..+.++|+.+++++..
T Consensus 81 ~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~f--Y~~iNiGSlis~~i~~ 145 (654)
T TIGR00926 81 HPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFF--YFAINAGSLISTIITP 145 (654)
T ss_pred cchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 112335566777778888888888899999887641 133344444 3367788888877444
No 273
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=97.30 E-value=0.038 Score=58.61 Aligned_cols=56 Identities=13% Similarity=0.127 Sum_probs=35.5
Q ss_pred chhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccc
Q 005307 605 SVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADG 663 (703)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~ 663 (703)
+-+..++.++++|+..|-.....+.+..+.++++ +|.. .|.+. ..+-.+|..+|..
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~-e~e~-aG~~~-~~~l~~Gl~~Gs~ 426 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPH-EREV-AGALM-VIFLLVGLALGAV 426 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHH-HHHH-HHHHH-HHHHHHHHHHHHH
Confidence 3455666788889999888888888888887776 5543 33332 2243444444443
No 274
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=97.27 E-value=0.0053 Score=61.48 Aligned_cols=89 Identities=13% Similarity=0.139 Sum_probs=70.1
Q ss_pred hhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhh
Q 005307 542 HYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAE 621 (703)
Q Consensus 542 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (703)
+.+|++..+++.++....+.+++.+.++| .+.||+|||+..+...++..++++.-.. .+...++++=++.|++.+
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G-~laD~~Grk~~cl~~cily~~scl~k~~----~~~~~L~~GRvlgGiaTS 136 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVG-SLADRYGRKKACLLFCILYSLSCLTKHS----SNYPVLLLGRVLGGIATS 136 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCchHHHHHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHH
Confidence 45899999999999988888888888988 9999999999988888887777653322 456777788888888888
Q ss_pred hhhHHHHHHHHhhc
Q 005307 622 VLEGVNLSLLSRVM 635 (703)
Q Consensus 622 ~~~~~~~~~~~~~~ 635 (703)
..+.+.-+++...-
T Consensus 137 LLfS~FEsW~V~Eh 150 (354)
T PF05631_consen 137 LLFSAFESWMVHEH 150 (354)
T ss_pred HHHHHHHHHHHHHH
Confidence 77776666554443
No 275
>PRK03612 spermidine synthase; Provisional
Probab=97.25 E-value=0.0078 Score=65.35 Aligned_cols=122 Identities=15% Similarity=0.067 Sum_probs=71.3
Q ss_pred hcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHH---HHHHHHHHHHHHHhhc-ccchh-HHHHHHHHHHhhc
Q 005307 277 SLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVF---SSIVLLVGNTLYAMAY-DLNSI-AVLLIGRLFCGLG 351 (703)
Q Consensus 277 ~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~---~~~~~~~~~~~~~~a~-~~~~~-~~l~i~r~l~Gi~ 351 (703)
-+|.+....+.+.+++.+|..+|+.++|++.++.-|+...+ ++++..++..+...+. ..... ..++..-++.|+.
T Consensus 44 ~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l 123 (521)
T PRK03612 44 LLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLL 123 (521)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888899999999999999999999998874433332211 1111111111111110 00111 1223333445666
Q ss_pred Ccc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh---cccc
Q 005307 352 SAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF---QTNF 399 (703)
Q Consensus 352 ~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l---~~g~ 399 (703)
.|+ |....+..+.. .++-++..|-......+|.++|.++.+++ .+|-
T Consensus 124 ~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~ 175 (521)
T PRK03612 124 IGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGL 175 (521)
T ss_pred HHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcch
Confidence 565 55555554322 12346677888888999999999998877 4554
No 276
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=97.07 E-value=0.041 Score=53.86 Aligned_cols=100 Identities=13% Similarity=0.089 Sum_probs=64.6
Q ss_pred HHHHHHHhhhhhhhccccCchhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCC--hh
Q 005307 293 AVAQVFSSVYFSAWSNRSYLKPLVFSSIVLLVGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVP--LK 368 (703)
Q Consensus 293 ~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~--~~ 368 (703)
.+.-+.++++.+.+..++|-|+++++++....-.+..=+- +.+..++-+-++.|+|.+. ..-.+|++++.. .+
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl~---pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~ 144 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANLE---PRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYAN 144 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcc---hhHHhhccHHHhhccccccccccCcceecHHHHHHHH
Confidence 3444555666668888999999998887766444444444 7899999999999999876 444444444322 22
Q ss_pred hh---------hhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 369 LR---------MRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 369 ~R---------~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
.| .+..|.+.+.+.-+..+|..++..+
T Consensus 145 ~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 145 QRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred hhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 33 4556666666666666665555443
No 277
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=96.97 E-value=0.0034 Score=65.76 Aligned_cols=104 Identities=18% Similarity=0.177 Sum_probs=77.9
Q ss_pred HHHHH-HHHHHHHHHHHhhcccch------hHHHHHHHHHHhhcCcc--hhhhHHhhccCChh---hhhhHHHHHHHHHH
Q 005307 315 LVFSS-IVLLVGNTLYAMAYDLNS------IAVLLIGRLFCGLGSAR--AVNRRYISDCVPLK---LRMRASAGFVSASA 382 (703)
Q Consensus 315 ~l~~~-~~~~~~~~~~~~a~~~~~------~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~---~R~~~~~~~~~~~~ 382 (703)
+++++ ++..+|.++..++...+. .+.++++-++.++|.|. |...++++|.++++ +|.+.+.++..+.+
T Consensus 3 tI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~in 82 (372)
T PF00854_consen 3 TILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGIN 82 (372)
T ss_dssp HHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 34444 445577777554421123 37889999999999887 99999999998765 57788889999999
Q ss_pred HHHHHHHHhhhhh--cccccccccccccchhHHHHHHHHHHHHHHHHH
Q 005307 383 LGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLW 428 (703)
Q Consensus 383 ~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~ 428 (703)
+|..+++.+.+++ +.|| .+.|++.++..+++++..+
T Consensus 83 ~G~~~~~~~~~~i~~~~~~----------~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 83 IGSLFSPTLVPYIQQNYGW----------FLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHCCCHHHHCS-H----------HHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhcccchhhccccch----------hhhhhHHHHHHHHHHHHHH
Confidence 9999999999999 7887 8888888877776665443
No 278
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=96.74 E-value=0.026 Score=54.60 Aligned_cols=137 Identities=15% Similarity=0.194 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhccccCc-hhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHhhcCcc-hhhhHHhh
Q 005307 285 CGVIIGSMAVAQVFSSVYFSAWSNRSYL-KPLVFSSIVLLVGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR-AVNRRYIS 362 (703)
Q Consensus 285 ~g~i~s~~~l~~~i~~~~~G~l~Dr~Gr-r~~l~~~~~~~~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~-~~~~~~i~ 362 (703)
.|.+.-+-.+...+.-+.+..+.||+-- .++.+..+..+.+.++.+++ ++.++-+.+-++..+++|. -+..--++
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs---~s~~~sL~GV~~aSissGlGEiTFL~ls 140 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFS---NSVPMSLLGVVFASISSGLGEITFLALS 140 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEec---cchhHHHhhhhhhhhcCCcceeehhhhh
Confidence 4555566666777777777788888542 23333334445777788888 9999999999999999887 33222233
Q ss_pred ccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-c-ccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCc
Q 005307 363 DCVPLKLRMRASAGFVSASALGMACGPALACLF-Q-TNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPL 436 (703)
Q Consensus 363 ~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~-~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~ 436 (703)
..+++ ...+.++.+.+.+.++|..--..+ . .+.. -+.+.+++..+.++.+...++.+++++.
T Consensus 141 s~Y~~----~~i~~WSSGTGgAGliGa~SYa~lT~~~~~s--------pk~Tlli~l~lP~lfa~~yf~lL~~pes 204 (409)
T KOG3880|consen 141 SRYPS----IVIAGWSSGTGGAGLIGASSYAFLTSWANLS--------PKSTLLIMLFLPALFAFAYFFLLKSPES 204 (409)
T ss_pred ccCCC----ceeccccCCCCcchhhhhhHHHHHhhhcCCC--------hhhHHHHHHHHHHHHHHHHHheeCCCcc
Confidence 33332 233344444555555555433333 2 2321 1778888888887777776776766654
No 279
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=96.62 E-value=0.0017 Score=60.65 Aligned_cols=66 Identities=11% Similarity=0.061 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhc---------cccCchhH
Q 005307 250 LLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWS---------NRSYLKPL 315 (703)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~---------Dr~Grr~~ 315 (703)
.+....+.++..+..+.....+-.++++.|.++.....++-...+.-++..|+.|..+ ||+|||..
T Consensus 19 vf~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~idr~G~~~~ 93 (412)
T KOG4830|consen 19 VFAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDRIGRRMS 93 (412)
T ss_pred eeeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhhhhcceee
Confidence 3444556666667667777777788899999998888888888999999999988654 57888764
No 280
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=96.60 E-value=0.13 Score=51.45 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHHHhcCcc-chhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH----
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAA-ATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL---- 323 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s-~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~---- 323 (703)
..+.+.++.++...+.-+.......++..++.+ -...+.-..+-....++..++.|.+.|...|++++...+..-
T Consensus 28 ~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv 107 (503)
T KOG2601|consen 28 TVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSV 107 (503)
T ss_pred eeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHHHhhccHHH
Confidence 345567777777777777777778888887654 344444445555667888899999999999998877654321
Q ss_pred ---HHHHHHHhhcc---cchhHHHHHHHHHHhhcCcc----hhhhHHh--hcc----CChhhh---hhHHHHHHHHHHHH
Q 005307 324 ---VGNTLYAMAYD---LNSIAVLLIGRLFCGLGSAR----AVNRRYI--SDC----VPLKLR---MRASAGFVSASALG 384 (703)
Q Consensus 324 ---~~~~~~~~a~~---~~~~~~l~i~r~l~Gi~~g~----~~~~~~i--~~~----~~~~~R---~~~~~~~~~~~~~G 384 (703)
.+.++..+... ..+...+..+-++.-..++. ..+.+++ -|| ...+.+ .+..+.....-..-
T Consensus 108 ~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~i~RDWvvV~s~g~s~s~lt~mnatir~iDq~t 187 (503)
T KOG2601|consen 108 IVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTILIERDWVVVMSEGESPSVLTNMNATIRGIDQST 187 (503)
T ss_pred HHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEEecccEEEEecCCCCHHHHhhcchhhhhhhhhh
Confidence 33333334321 12444444444443322222 2222222 222 223333 34446666666677
Q ss_pred HHHHHHhhhhh
Q 005307 385 MACGPALACLF 395 (703)
Q Consensus 385 ~~lgp~i~~~l 395 (703)
.++.|++.|.+
T Consensus 188 n~Lapv~tg~I 198 (503)
T KOG2601|consen 188 NLLAPVITGLI 198 (503)
T ss_pred hchhhhhhccc
Confidence 78899998888
No 281
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.31 E-value=0.29 Score=51.51 Aligned_cols=128 Identities=19% Similarity=0.059 Sum_probs=92.2
Q ss_pred ccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH----HHHHHHHhhcccc----hhH
Q 005307 268 VPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL----VGNTLYAMAYDLN----SIA 339 (703)
Q Consensus 268 ~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~----~~~~~~~~a~~~~----~~~ 339 (703)
...+..|...-|.++..+|..-+...+..+.+.+.+.++.+|+|..+.-++++..- ..++...+++..+ +..
T Consensus 278 ~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~ 357 (432)
T PF06963_consen 278 GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAY 357 (432)
T ss_pred cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHH
Confidence 44566677777999999999999999999999999999999999766655554422 2222222221112 334
Q ss_pred HHHHHHHHHhhc-Ccc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 340 VLLIGRLFCGLG-SAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 340 ~l~i~r~l~Gi~-~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
.++.+-++.=+| .+. .+..-++-|..|+++||...|.-.+..++--++-.+++-.+
T Consensus 358 ~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 358 LLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444444444444 344 77788889999999999999999988888888877766655
No 282
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=96.20 E-value=0.001 Score=72.39 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=2.8
Q ss_pred HHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccc-----
Q 005307 527 YAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHIL----- 601 (703)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~----- 601 (703)
....++....-.-++++|+++..++|++.+..-++.++..+++. ++..|..|.+.+-+|.++++++.++.....
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vs-y~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~ 94 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVS-YFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGP 94 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCC
Confidence 44444544444567788999999999999999999999888888 888887788888888888888876432110
Q ss_pred -------------------c-----------------------ccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCC
Q 005307 602 -------------------V-----------------------PYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRL 639 (703)
Q Consensus 602 -------------------~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (703)
. ...+..++++.++.|+|....++...+++-|.++++
T Consensus 95 y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~- 173 (539)
T PF03137_consen 95 YSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKK- 173 (539)
T ss_dssp ---------------------------------------------------------SSS--------------------
T ss_pred CccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccc-
Confidence 0 001456777888889999999999999999999999
Q ss_pred cccccchhhhHHhhhhhhhhhccceee
Q 005307 640 SRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 640 ~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
..+.++|++.+ ...+|-++|-++++
T Consensus 174 ~splYiGi~~~--~~~lGPa~Gf~lg~ 198 (539)
T PF03137_consen 174 NSPLYIGILYA--MSILGPALGFLLGS 198 (539)
T ss_dssp ---------------------------
T ss_pred cCccchhhhhH--HhhccHHHHHHHHH
Confidence 77777888733 55566555555444
No 283
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=96.19 E-value=0.027 Score=57.91 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=97.6
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhh----hhhHHHHHH-HHH
Q 005307 514 SVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNI----FEERQVLLA-SEI 588 (703)
Q Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r----~g~r~~~~~-~~~ 588 (703)
.+.....+.+...+++..-..+.++|.+. .|.+....+.++...-+.+.+.+.++| ..+|| +|||+..+. +..
T Consensus 33 ~li~v~~ia~Gvqf~wA~elsy~tPyl~~-lGvphk~~S~iw~~gPi~G~~vQP~vG-~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 33 KLISVASIAAGVQFGWALELSYLTPYLQS-LGVPHKWSSIIWLCGPLSGLLVQPLVG-SASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHH-cCCCcccccccccccccccceeccccc-ccccccccccccccchHHHhhH
Confidence 34555566677778888888888999887 599999899999888999999999988 88886 788876554 344
Q ss_pred HHHHHHhhcccc--------ccc------cchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccc-cchhhhHHhh
Q 005307 589 IVCIGILLSFHI--------LVP------YSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGT-YNGGLLSTEA 653 (703)
Q Consensus 589 ~~~i~~~~~~~~--------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~g~~~~~~~ 653 (703)
..+++++++... ... .....++++..+.=++...+...+-+++.+...+. .+-+ +++.. ..+
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d-~~~~~Ans~f--~~f 187 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGD-AKKTRANSVF--SFF 187 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccCh-hhhhccchhH--HHH
Confidence 445554432111 000 12344555555555666677888899999998877 4444 55554 334
Q ss_pred hhhhhhhccc
Q 005307 654 GTLARVIADG 663 (703)
Q Consensus 654 ~~~g~~~gp~ 663 (703)
..+|+.+|-.
T Consensus 188 ~avGnvLGY~ 197 (498)
T KOG0637|consen 188 MAVGNVLGYA 197 (498)
T ss_pred HHhcceeeee
Confidence 4566665555
No 284
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=96.18 E-value=0.089 Score=46.68 Aligned_cols=100 Identities=11% Similarity=-0.023 Sum_probs=71.4
Q ss_pred HhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhc
Q 005307 556 ACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVM 635 (703)
Q Consensus 556 ~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (703)
++......+..++.+ .+.+++|.|+.+++|.+..++-.... .. .+.+.++.+.++.|++.+..+...-.++.+..
T Consensus 44 ai~Y~~~~~s~l~~P-~iv~~lg~K~sm~lg~~~y~~y~~~~-~~---~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s 118 (156)
T PF05978_consen 44 AILYGSFAISCLFAP-SIVNKLGPKWSMILGSLGYAIYIASF-FY---PNSYTLYPASALLGFGAALLWTAQGTYLTSYS 118 (156)
T ss_pred HHHHHHHHHHHHhHH-HHHHHHhhHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcC
Confidence 444445555555555 78899999999999887776553322 22 34667778888889999999988888998888
Q ss_pred cCCCcccccchhhhHHhhhhhhhhhccc
Q 005307 636 SSRLSRGTYNGGLLSTEAGTLARVIADG 663 (703)
Q Consensus 636 ~~~~~~g~~~g~~~~~~~~~~g~~~gp~ 663 (703)
.++ .+++..|+.- .....+.++|++
T Consensus 119 ~~~-~~~~~~~ifw--~i~~~s~i~G~~ 143 (156)
T PF05978_consen 119 TEE-TIGRNTGIFW--AIFQSSLIFGNL 143 (156)
T ss_pred CHH-HHhhHHHHHH--HHHHHHHHHHHH
Confidence 777 7887777763 355556666655
No 285
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.04 E-value=0.11 Score=53.60 Aligned_cols=108 Identities=17% Similarity=0.137 Sum_probs=78.7
Q ss_pred cchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHH-H-----HHHHHHHHhhcccchhHHHHHHHHHHhhcCcc
Q 005307 281 AATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIV-L-----LVGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR 354 (703)
Q Consensus 281 s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~-~-----~~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~ 354 (703)
...+.-+...+|.+|.+++.--...+ |+ |++.+.+++ . ++....+-+. ++.|.+++.-+..|+.+|.
T Consensus 279 ~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fi---psi~ivf~lif~eGLlGGa 351 (402)
T PF02487_consen 279 PRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFI---PSIWIVFVLIFYEGLLGGA 351 (402)
T ss_pred HHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHhhhH
Confidence 35677888888988888775543222 33 333333322 1 1222333344 8999999999999999888
Q ss_pred --hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 355 --AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 355 --~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
.-....+.|-.++++|..++|....+-++|.+++.+++-++
T Consensus 352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66677788889999999999999999999999999888776
No 286
>PRK03612 spermidine synthase; Provisional
Probab=95.95 E-value=0.11 Score=56.64 Aligned_cols=57 Identities=7% Similarity=-0.004 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhh
Q 005307 518 QLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISN 575 (703)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~ 575 (703)
+.+..++..++..++...+.-.+...+|-+....+.+.+++-++..+|+.+.+ ++.+
T Consensus 19 l~~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~-~~~~ 75 (521)
T PRK03612 19 LLAAVFVCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSK-YLLR 75 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH-hhhh
Confidence 34444555566666666666677777787777777777777666667766644 5543
No 287
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.71 E-value=0.15 Score=53.75 Aligned_cols=146 Identities=19% Similarity=0.180 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHH---HHhcCccc-hhhhHHHHHHHHHHHHHhhhhhhhccc---cCchhHHHHHHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNY---SLSLGAAA-TLCGVIIGSMAVAQVFSSVYFSAWSNR---SYLKPLVFSSIV 321 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~s~-~~~g~i~s~~~l~~~i~~~~~G~l~Dr---~Grr~~l~~~~~ 321 (703)
.++++....+..++..+......|.- ....+.+. ...++..-...+|..++..+.+.+++| +||++++.++.+
T Consensus 241 ~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~ 320 (461)
T KOG3098|consen 241 KMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGII 320 (461)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHH
Confidence 33444444555555555444444433 22333333 333444445566777777888888766 889998888866
Q ss_pred HH-HHHHHHHhhcc---------------cchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHH
Q 005307 322 LL-VGNTLYAMAYD---------------LNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASAL 383 (703)
Q Consensus 322 ~~-~~~~~~~~a~~---------------~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~ 383 (703)
.. ++.++.-+..+ .+++...++.-++.|++-+. ...+.++++.. +++|..+.+++..-.++
T Consensus 321 ~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~ 399 (461)
T KOG3098|consen 321 IHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSV 399 (461)
T ss_pred HHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHH
Confidence 54 65555554421 13566778888999999887 77888888888 67888999988888887
Q ss_pred HHHHHHHhhhhh
Q 005307 384 GMACGPALACLF 395 (703)
Q Consensus 384 G~~lgp~i~~~l 395 (703)
+..++-......
T Consensus 400 ~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 400 ASCVAFFFSPYL 411 (461)
T ss_pred HHHHHhhhhhhh
Confidence 777655444433
No 288
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=95.52 E-value=0.16 Score=54.15 Aligned_cols=127 Identities=9% Similarity=0.042 Sum_probs=79.1
Q ss_pred hhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhh-----hHHHHHHHHHHHHHHHhhccccc-cccchhHH
Q 005307 536 SSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFE-----ERQVLLASEIIVCIGILLSFHIL-VPYSVPQY 609 (703)
Q Consensus 536 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g-----~r~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~ 609 (703)
..+|+.+.+|+++.+...+.++.++-..+ ..+.| .++|-+. ||..++++.++.+++.+.+.... ...+....
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~lPw~~-Kp~~g-~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~ 89 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASLPWSI-KPLYG-LLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA 89 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhCchHH-hhhHH-hhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH
Confidence 44677888999999998877776665544 45557 9999864 44555566665544433222221 12334445
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHhhccCCC-cccccchhhhHHhhhhhhhhhccceee
Q 005307 610 VGSALITFVAAEVLEGVNLSLLSRVMSSRL-SRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
.+.+++..+|......+.-+++.|....+. .+|...+.. .....+|.+++..+.+
T Consensus 90 ~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~--~~~~~~G~lv~~~l~G 145 (433)
T PF03092_consen 90 VVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFV--WGVRSVGSLVGSLLSG 145 (433)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHH--HHHHHHHHHHHHHhhh
Confidence 555666677777777888888888886652 234444443 2355677777776554
No 289
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=94.66 E-value=0.36 Score=48.35 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=74.8
Q ss_pred hhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHH
Q 005307 549 SRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNL 628 (703)
Q Consensus 549 ~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (703)
...++..+...+...++..+.| ++.||.|+|+.+..+.....++.++..... ....+.+++.....+++.+...+...
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g-~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 116 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAG-PLGDRYGRRKVLIIGLLLFLLGTLLLALAP-NVGLALLLILRLLQGLGGGGLLPVAS 116 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhh-hccccccchHHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3567777777777777776667 999999999777777654333322222221 12345555555556778778888999
Q ss_pred HHHHhhccC-CCcccccchhhhHHhhhhhhhhhccceee
Q 005307 629 SLLSRVMSS-RLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 629 ~~~~~~~~~-~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+++.+..|+ . .++...+..... ...+|..++|.+++
T Consensus 117 ~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 153 (338)
T COG0477 117 ALLSEWFPEAT-ERGLAVGLVTLG-AGALGLALGPLLAG 153 (338)
T ss_pred HHHHHhcCchh-HHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 999999997 3 467666665332 45567777775444
No 290
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=94.06 E-value=0.96 Score=48.11 Aligned_cols=147 Identities=18% Similarity=0.120 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHh--cCccch-hhhHHHHHHHHHHHHHhhhhhhhccccCch--hHHHHHHH-
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLS--LGAAAT-LCGVIIGSMAVAQVFSSVYFSAWSNRSYLK--PLVFSSIV- 321 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~s~~-~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr--~~l~~~~~- 321 (703)
+.++...++.++..+-.-.+.|.+....+. .+.++. ..-+...++.++-.+|..+..+.. .-++| .+++.++.
T Consensus 269 kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R 347 (437)
T TIGR00939 269 TKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLR 347 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHH
Confidence 445555555555555444444543222221 123332 334567788888888888665431 22333 45544444
Q ss_pred -HHHHH-HHHHhhc------ccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHh
Q 005307 322 -LLVGN-TLYAMAY------DLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPAL 391 (703)
Q Consensus 322 -~~~~~-~~~~~a~------~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i 391 (703)
.++-. ++|..-+ ..++-+..++.-++.|+..|. +.+..+..+..++++|..+-.+...+..+|..+|..+
T Consensus 348 ~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 348 VLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 2332211 124667777789999999998 7788888888999999999999999999999998877
Q ss_pred hhhh
Q 005307 392 ACLF 395 (703)
Q Consensus 392 ~~~l 395 (703)
+-.+
T Consensus 428 ~~~~ 431 (437)
T TIGR00939 428 SFLF 431 (437)
T ss_pred HHHH
Confidence 6544
No 291
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=93.58 E-value=0.45 Score=36.99 Aligned_cols=67 Identities=10% Similarity=-0.028 Sum_probs=51.9
Q ss_pred HHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhcc
Q 005307 530 EILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSF 598 (703)
Q Consensus 530 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~ 598 (703)
+.+...+|... +..++|..+.|++-+...++.++|..... ++.++..+++.+..+++...+..+.+.
T Consensus 9 FayTplLP~M~-~~~~ls~~~ag~lasaNy~GYL~GAl~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ma 75 (85)
T PF06779_consen 9 FAYTPLLPLMQ-ADGGLSLSQAGWLASANYLGYLVGALLAS-RLPRHSRPRRLLRAGLLLTVLSTAAMA 75 (85)
T ss_pred HHHHhHhHHHH-HhcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 34444555554 45799999999999999999999998877 888887888888888888777765443
No 292
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.51 E-value=2.2 Score=44.40 Aligned_cols=110 Identities=13% Similarity=0.094 Sum_probs=60.4
Q ss_pred hhhhhhccchhhhhccChhhH-HHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 005307 6 KKLKETQIQEWQGYYINYKLL-KKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIV---LFLLEQQGALASRLSDLG 81 (703)
Q Consensus 6 ~~l~~~~~~ew~~~yi~Y~~l-K~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~kv~---~f~~~~~~~~~~~~~~~~ 81 (703)
..|..+.+.-.+++||.|-+| |..+.+.......-.++. ..=...+++|.++|. .|..++.+|..+|.+.|+
T Consensus 561 ~~lL~~a~~vfrEqYi~~~dlV~~e~qrH~~~l~~~k~~Q----lQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~ 636 (741)
T KOG4460|consen 561 LQLLSRATQVFREQYILKQDLVKEEIQRHVKLLCDQKKKQ----LQDLSYCREERKSLREMAERLADRYEEAKEKQEDLM 636 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 345556667789999999876 333333222111111111 111234455555554 455666677777777777
Q ss_pred HHHHHhccC------CCchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 005307 82 EHHDALSQH------QDGSRISELQEAYRAVGHDLLRLLFFVEM 119 (703)
Q Consensus 82 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~l~~~~~l 119 (703)
...+.+... +.....++.+..+..+..+++.|.+=.+.
T Consensus 637 ~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET 680 (741)
T KOG4460|consen 637 NRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIET 680 (741)
T ss_pred HHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 776665332 12333456667777777777777665444
No 293
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=93.26 E-value=0.97 Score=48.30 Aligned_cols=145 Identities=9% Similarity=0.091 Sum_probs=78.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccc-----cchhHHHHHHhhhhhhhhH-HHHHHhhhhhhhhhHHHHHHH
Q 005307 513 PSVKVQLFVYFMLKYAMEILLAESSVITEHYFIW-----STSRVAIFLACLGLTVLPV-NIIVGNYISNIFEERQVLLAS 586 (703)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----s~~~~g~~~~~~~~~~~~~-~~~~~~~l~~r~g~r~~~~~~ 586 (703)
+++....+..++..+.++..- -+.+..+. +.....++.+..-+.+.+. ..+.+ ++++|++++++..+.
T Consensus 7 ~k~~~~~l~fF~il~~Y~iLR-----~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~-~l~~~~~~~~lf~~~ 80 (472)
T TIGR00769 7 KKFLPLFLMFFCILFNYTILR-----DTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYT-KLSNILSKEALFYTV 80 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----hhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHH-HHHhcCCHHHhHHHH
Confidence 345555555555555554432 23444444 3345566655554554555 45556 999999999876654
Q ss_pred HHHHHHHHhh----ccccccc--c----------------------chhHHHHHHHHHHhhhhhhhH-HHHHHHHhhccC
Q 005307 587 EIIVCIGILL----SFHILVP--Y----------------------SVPQYVGSALITFVAAEVLEG-VNLSLLSRVMSS 637 (703)
Q Consensus 587 ~~~~~i~~~~----~~~~~~~--~----------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 637 (703)
.......+++ +.+.... . ..|...+..+..-+....+.+ ..+++.++....
T Consensus 81 ~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~ 160 (472)
T TIGR00769 81 ISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTI 160 (472)
T ss_pred HHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 3333322221 1111000 0 012222222222233333333 677889999988
Q ss_pred CCcccccchhhhHHhhhhhhhhhccceee
Q 005307 638 RLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 638 ~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+ +..+..+.+ ...+++|..++|.+..
T Consensus 161 ~-qakRfy~l~--~~ganlg~i~sg~~~~ 186 (472)
T TIGR00769 161 D-EAKRFYALF--GLGANVALIFSGRTIK 186 (472)
T ss_pred H-HHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 8 667778887 5588888888887544
No 294
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.67 E-value=0.092 Score=58.03 Aligned_cols=132 Identities=16% Similarity=0.115 Sum_probs=94.4
Q ss_pred HHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccc---------
Q 005307 531 ILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHIL--------- 601 (703)
Q Consensus 531 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~--------- 601 (703)
++....-.-+.++++++..+.|++....-++.++...++. +...|..|.+++-+|.++++++.++.....
T Consensus 114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVs-YfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~ 192 (735)
T KOG3626|consen 114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVS-YFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYE 192 (735)
T ss_pred hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHH-HhccccCccceeeechhHHHHHHHHHhChHHhcCcchhh
Confidence 4544445567788999999999988888888888777777 777888888888888888888766432210
Q ss_pred ---------cc---------------------------c----chhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcc
Q 005307 602 ---------VP---------------------------Y----SVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSR 641 (703)
Q Consensus 602 ---------~~---------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (703)
.+ . .+..++++.++.|+|....++...+++-|.+.++ ..
T Consensus 193 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~-~S 271 (735)
T KOG3626|consen 193 LEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKK-NS 271 (735)
T ss_pred hhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcccccccccc-CC
Confidence 00 0 2346677788888998888999999999999888 77
Q ss_pred cccchhhhHHhhhhhhhhhccceee
Q 005307 642 GTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 642 g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
..++|++.+ +..+|-++|-++++
T Consensus 272 plYlgi~~~--~~~lGPaiGfllgS 294 (735)
T KOG3626|consen 272 PLYLGILYS--MAILGPAIGFLLGS 294 (735)
T ss_pred cHHHHHHHH--HHHhhhHHHHHHHH
Confidence 777777633 44455555544443
No 295
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=92.65 E-value=4.7 Score=35.34 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccC
Q 005307 65 FLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFDKRFG 136 (703)
Q Consensus 65 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK~~~ 136 (703)
+.....+|+.+|.+.+..+++.+.-++....++.+...=.++..-+..+-.++.+|++++.|-++-|-+..+
T Consensus 82 ~l~d~inE~t~k~~El~~~i~el~~~~~Ks~~~~l~q~~~~~eEtv~~~ieqqk~~r~e~qk~~~~yv~~~k 153 (165)
T PF09602_consen 82 SLNDSINEWTDKLNELSAKIQELLLSPSKSSFSLLSQISKQYEETVKQLIEQQKLTREEWQKVLDAYVEQAK 153 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556688888888888887765545444555555555566667778999999999999999998876543
No 296
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=92.28 E-value=0.86 Score=47.31 Aligned_cols=126 Identities=13% Similarity=0.001 Sum_probs=76.6
Q ss_pred HhhhhHHhhhh-ccccchhHHH-HHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHH
Q 005307 533 LAESSVITEHY-FIWSTSRVAI-FLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYV 610 (703)
Q Consensus 533 ~~~~~~~~~~~-~g~s~~~~g~-~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 610 (703)
..++..|+... .|++..++.- ++-+..-..++..+.+. .+.|.++.|.+++++.+...+..+++... .+.+.+-
T Consensus 23 EPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vf-lltd~l~Ykpviil~~~~~i~t~~lll~~---~sv~~mq 98 (412)
T PF01770_consen 23 EPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVF-LLTDYLRYKPVIILQALSYIITWLLLLFG---TSVLAMQ 98 (412)
T ss_pred CccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHH---CcHHHHH
Confidence 34455677665 7888888742 22222223333334445 77899999999988887776665554433 5677777
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 611 GSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+..++.|++.+. ..+.++++-..+|++ +.-++.+...+ ...+|.+++.+++.
T Consensus 99 ~~q~~yg~~~a~-evay~sYiys~v~~~-~yq~vts~~ra--a~l~g~~~s~~lgQ 150 (412)
T PF01770_consen 99 LMQFFYGLATAA-EVAYYSYIYSVVDKE-HYQKVTSYTRA--ATLVGRFISSLLGQ 150 (412)
T ss_pred HHHHHHHHHHHH-HHHHHHHheeecCHH-HHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 777877776644 456667777777776 33334444422 33455566655444
No 297
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=92.12 E-value=0.32 Score=50.90 Aligned_cols=84 Identities=7% Similarity=0.027 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHhhcccccc------ccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCC--cccccchhhhHHh
Q 005307 581 QVLLASEIIVCIGILLSFHILV------PYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRL--SRGTYNGGLLSTE 652 (703)
Q Consensus 581 ~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~~~g~~~~~~ 652 (703)
+++++|.++..+|.+++..... ..+.+.+.+++.+.++|.|..=|...++..+.++++. ++.+....+ ..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~f--Y~ 79 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWF--YW 79 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHH--HH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHH--HH
Confidence 4566777777777665322211 1234678888888999999999999999999999872 233344444 33
Q ss_pred hhhhhhhhccceee
Q 005307 653 AGTLARVIADGTIT 666 (703)
Q Consensus 653 ~~~~g~~~gp~~~~ 666 (703)
..++|..+++.+.+
T Consensus 80 ~in~G~~~~~~~~~ 93 (372)
T PF00854_consen 80 GINIGSLFSPTLVP 93 (372)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHhhhhHhhcccch
Confidence 66788888887443
No 298
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=90.25 E-value=1.8 Score=44.59 Aligned_cols=126 Identities=13% Similarity=0.108 Sum_probs=83.2
Q ss_pred ccchhHHHHhc---Cc-cchhhhHHHHH-HHHHHHHHhhhhhhhccccCchhHHHHHHH--HHHHHHHHHh----hcccc
Q 005307 268 VPTADNYSLSL---GA-AATLCGVIIGS-MAVAQVFSSVYFSAWSNRSYLKPLVFSSIV--LLVGNTLYAM----AYDLN 336 (703)
Q Consensus 268 ~~~l~~~~~~~---g~-s~~~~g~i~s~-~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~--~~~~~~~~~~----a~~~~ 336 (703)
..+.|.+..+- +. +....-++..+ +.+..++|.+.+.++-+.- ||...+.++. .++-.+...- .....
T Consensus 263 LsiFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~-~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~ 341 (406)
T KOG1479|consen 263 LSIFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWPD-PRKLTIPVLLRLLFIPLFLLCNYPPLPVVFE 341 (406)
T ss_pred eEecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCCC-CceehHHHHHHHHHHHHHHHhccCCCCceec
Confidence 33456665542 22 33444555666 8899999977777766554 4554444443 2222222111 11126
Q ss_pred hhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 005307 337 SIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACL 394 (703)
Q Consensus 337 ~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~ 394 (703)
+-+++++.-.+.|+..|- .....+.....|++++-.+-.+.......|..+|.+++..
T Consensus 342 ~~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l 401 (406)
T KOG1479|consen 342 SDGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV 401 (406)
T ss_pred CchHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 778888999999999997 7888888999999998888888888888888888776543
No 299
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=89.07 E-value=0.3 Score=46.51 Aligned_cols=95 Identities=8% Similarity=0.022 Sum_probs=59.6
Q ss_pred hhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHH
Q 005307 536 SSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALI 615 (703)
Q Consensus 536 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 615 (703)
+..|+-+.+|+...++|.++...-...++.+.++| -++||.||++....-.+...++++-= . ....-..+++-++
T Consensus 59 YvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivg-SLaDkqGRKracvtycitYiLsCiTK-h---SpqYkVLmVGR~L 133 (454)
T KOG4332|consen 59 YVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVG-SLADKQGRKRACVTYCITYILSCITK-H---SPQYKVLMVGRVL 133 (454)
T ss_pred eeeeeehhcCccCCccceeeecccchHHHHHHHHH-HHHhhhccccceeeehHHHHHHHHhh-c---CCceEEEeehhhh
Confidence 34456667899999999877665555666677777 89999999997654444444443211 1 2334455566666
Q ss_pred HHhhhhhhhHHHHHH-HHhhc
Q 005307 616 TFVAAEVLEGVNLSL-LSRVM 635 (703)
Q Consensus 616 ~~~~~~~~~~~~~~~-~~~~~ 635 (703)
-|++.+..+...-++ +.+..
T Consensus 134 GGiaTsLLFSaFEsWliaEHn 154 (454)
T KOG4332|consen 134 GGIATSLLFSAFESWLIAEHN 154 (454)
T ss_pred hhHHHHHHHHHHHHHHHHHhh
Confidence 677666655555443 34433
No 300
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=87.96 E-value=16 Score=36.66 Aligned_cols=86 Identities=15% Similarity=0.078 Sum_probs=56.0
Q ss_pred cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCch-hH---HHHHHHHH--HHHHHHHhhc-ccchhHHHHHHHHHHhh
Q 005307 278 LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLK-PL---VFSSIVLL--VGNTLYAMAY-DLNSIAVLLIGRLFCGL 350 (703)
Q Consensus 278 ~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr-~~---l~~~~~~~--~~~~~~~~a~-~~~~~~~l~i~r~l~Gi 350 (703)
+|.+--+.+++.+.|..+..+|+...-++.|.--.- -+ ++.+++.. ...+-..|+. ..++.+.++++-++.|.
T Consensus 38 lG~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~ 117 (508)
T COG4262 38 LGGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGV 117 (508)
T ss_pred cCCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 466778899999999999999999988887763322 22 12333311 1111223332 12577888888888888
Q ss_pred cCcc--hhhhHHhhc
Q 005307 351 GSAR--AVNRRYISD 363 (703)
Q Consensus 351 ~~g~--~~~~~~i~~ 363 (703)
-.|. |..+.++..
T Consensus 118 LVG~EiPL~mrml~~ 132 (508)
T COG4262 118 LVGAEIPLLMRMLQR 132 (508)
T ss_pred HHhcchHHHHHHHHH
Confidence 8887 777777654
No 301
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=86.58 E-value=9.9 Score=36.66 Aligned_cols=52 Identities=17% Similarity=0.027 Sum_probs=28.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH--Hhhh-hh----cccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 005307 368 KLRMRASAGFVSASALGMACGP--ALAC-LF----QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWI 429 (703)
Q Consensus 368 ~~R~~~~~~~~~~~~~G~~lgp--~i~~-~l----~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~ 429 (703)
++|+....+...++++|.++.- .+-. -. .-.| ++++.+.+++.++.+++..+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W----------~~I~si~~lL~~IpLIly~i 60 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNW----------QWILSIFILLIFIPLILYII 60 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666677766543 2222 01 2234 88887777777666555444
No 302
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=86.45 E-value=0.26 Score=49.98 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=3.5
Q ss_pred chhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccc
Q 005307 605 SVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADG 663 (703)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~ 663 (703)
+-+.+++.++++++..|-..+..+.+.++.++++ ++.. .|.+. .++-.+|-.+|..
T Consensus 247 ~d~~~~i~~~l~g~TNGyl~tl~m~~~p~~v~~~-e~e~-aG~~~-~~~L~~Gl~~Gs~ 302 (309)
T PF01733_consen 247 SDAWFIILMLLFGFTNGYLSTLAMMYAPKSVSPE-EREL-AGSVM-SFFLSFGLFIGSV 302 (309)
T ss_dssp --------------------HHHH-----------------------------------
T ss_pred chHHHHHHHHHHHHccchhhhceeeeCCCcCCHH-HHHH-HHHHH-HHHHHHHHHHHHH
Confidence 3455666778888988888888888888888876 5543 33322 2233344444444
No 303
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=85.44 E-value=10 Score=38.01 Aligned_cols=35 Identities=9% Similarity=0.037 Sum_probs=16.8
Q ss_pred ChhhHHHHHHhhhhhhhccchhhhhHHHHHHHHHH
Q 005307 22 NYKLLKKKVNRYTQQIQVGAENRLNVLKDFARMLD 56 (703)
Q Consensus 22 ~Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~ 56 (703)
=|+.||++......++....+++.+..+.|.+.+-
T Consensus 34 l~~~L~~l~~~~~~~d~~~~~~~~~~~~~FL~~Fp 68 (313)
T PF05461_consen 34 LREALKELTEDMDSEDKDRSQKDQQDRERFLKEFP 68 (313)
T ss_pred HHHHHHHHHhhhhccccchhHHHHHHHHHHHHHhH
Confidence 36666666665443333333333333455655443
No 304
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.04 E-value=17 Score=34.52 Aligned_cols=93 Identities=10% Similarity=0.070 Sum_probs=58.3
Q ss_pred hhhhhccChhhHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhccCC
Q 005307 15 EWQGYYINYKLLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIVLFLLEQQGAL---ASRLSDLGEHHDALSQHQ 91 (703)
Q Consensus 15 ew~~~yi~Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~---~~~~~~~~~~~~~~~~~~ 91 (703)
+=+.+=.+|.++|-.|....+..+ .++.|.+.+..|.+..+.=+....++| ..-++.++..+.+...
T Consensus 5 ~ir~K~~~lek~k~~i~~e~~~~e--------~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~-- 74 (230)
T PF10146_consen 5 EIRNKTLELEKLKNEILQEVESLE--------NEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAES-- 74 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 445556677888877777553322 245677777777777766555544444 5556666666655332
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhHHHHH
Q 005307 92 DGSRISELQEAYRAVGHDLLRLLFFVEMN 120 (703)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~l~~l~~~~~ln 120 (703)
.-.+.++....+|+|+..|+..++-.
T Consensus 75 ---er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 75 ---ERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23345566778888888888876644
No 305
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=84.67 E-value=2.4 Score=33.61 Aligned_cols=24 Identities=21% Similarity=0.534 Sum_probs=21.3
Q ss_pred ccchhhhhccChhhHHHHHHhhhh
Q 005307 12 QIQEWQGYYINYKLLKKKVNRYTQ 35 (703)
Q Consensus 12 ~~~ew~~~yi~Y~~lK~~i~~~~~ 35 (703)
+...|+-.+.+|+.||..|..+++
T Consensus 3 sL~hWq~w~aEYe~LKEEi~~l~~ 26 (99)
T PF13758_consen 3 SLYHWQTWEAEYEGLKEEIEALPE 26 (99)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Confidence 456799999999999999999975
No 306
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=83.10 E-value=5.8 Score=35.49 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCC
Q 005307 68 EQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFDKRFGY 137 (703)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK~~~~ 137 (703)
.++.++...+.++.++....+.+.+-.++.++++.+..+..|+..+++=..-....+.+++++.......
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLTT 109 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777777766566677889999999999999999999999999999999998877633
No 307
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=82.59 E-value=17 Score=30.70 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005307 48 LKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQ 89 (703)
Q Consensus 48 ~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~ 89 (703)
..++...+..+|++|..=.....+++..|++.+..++++..+
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~e 82 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKE 82 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 467788889999999999999999999999999999887544
No 308
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=82.50 E-value=0.44 Score=48.27 Aligned_cols=108 Identities=19% Similarity=0.131 Sum_probs=3.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhccc-cCchhHHHHHHH--HHHHHHHHH-hh-------cccchhHHHHHHHHHHhhcCcc-
Q 005307 287 VIIGSMAVAQVFSSVYFSAWSNR-SYLKPLVFSSIV--LLVGNTLYA-MA-------YDLNSIAVLLIGRLFCGLGSAR- 354 (703)
Q Consensus 287 ~i~s~~~l~~~i~~~~~G~l~Dr-~Grr~~l~~~~~--~~~~~~~~~-~a-------~~~~~~~~l~i~r~l~Gi~~g~- 354 (703)
....++.++-.+|..+.++.-=+ -.+|.+++.++. .++..++.. .- ...++-+..++.-++.|+..|.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 35667889999998887764211 135555555443 222222222 11 0114567778888999999997
Q ss_pred -hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 005307 355 -AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACL 394 (703)
Q Consensus 355 -~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~ 394 (703)
+.+..+..+..++++|..+-.+...+..+|..+|..++-.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~ 306 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL 306 (309)
T ss_dssp -HHHH------------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888999999999988888888888888888776644
No 309
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.77 E-value=61 Score=36.91 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 005307 94 SRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFDK 133 (703)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK 133 (703)
...++.++.+..+..+++.|+ ..+.++-+|.+|
T Consensus 632 ~AEr~~~~EL~~~~~~l~~l~-------~si~~lk~k~~~ 664 (717)
T PF10168_consen 632 EAEREFKKELERMKDQLQDLK-------ASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 334566677777777766654 334445555554
No 310
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=76.92 E-value=16 Score=36.96 Aligned_cols=142 Identities=8% Similarity=-0.063 Sum_probs=90.0
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHH---HHHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhh
Q 005307 283 TLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVL---LVGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVN 357 (703)
Q Consensus 283 ~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~---~~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~ 357 (703)
..-|..-++..+..+++.+..|.+--.+.|..-+++++.. ....++++-. +++|..+++.++.+..... +++
T Consensus 271 vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t---~~Iw~~Ya~yvlfr~~y~l~itiA 347 (433)
T KOG3810|consen 271 VYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQT---QHIWVCYAGYVLFRVIYQLTITIA 347 (433)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcc---cceehhhhhHHHHHhhHhhhhhHH
Confidence 3446677778888899999999998887776444444332 2444455555 8899999999988877776 777
Q ss_pred hHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccc-cccccchhHHHHHHHHHHHHHHHHHHh
Q 005307 358 RRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYK-LTFNEDTLPGWVMALLWLVYLLWLWIS 430 (703)
Q Consensus 358 ~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~-~~~~~~~~~f~i~~~~~~~~~i~~~~~ 430 (703)
..-++.....+.-|..+|+.... +.++-.++.... ..|..+.. .++.-|..-|.+.+++.++...+.+..
T Consensus 348 ~~~iA~nL~~e~~gLvFGiNTFv---Al~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~~ 420 (433)
T KOG3810|consen 348 TFQIARNLSSELFGLVFGINTFV---ALILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYLM 420 (433)
T ss_pred HHHHHHhhhhhhheeeeehHHHH---HHHHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHHH
Confidence 77788877777777777765542 333333333333 22322111 234455666777777777665554443
No 311
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=76.58 E-value=37 Score=30.67 Aligned_cols=49 Identities=18% Similarity=0.190 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHH
Q 005307 48 LKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRIS 97 (703)
Q Consensus 48 ~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (703)
.-+|++.++-=+..=. =|.+|..++..-+..+-.-+.+++.....++..
T Consensus 87 llnfleL~~ILi~~P~-~~e~Kvedi~tifvnlHHLiNeyRPhQaResLi 135 (223)
T KOG0570|consen 87 LLNFLELLDILIRAPD-MREEKVEDIRTIFVNLHHLINEYRPHQARESLI 135 (223)
T ss_pred HHHHHHHHHHHHhCch-hHHHHHHHHHHHHHHHHHHHhccCchhHHHHHH
Confidence 3678888776444433 567777777776666666666655544333433
No 312
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=76.55 E-value=17 Score=39.05 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCC
Q 005307 96 ISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFDKRFGY 137 (703)
Q Consensus 96 ~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK~~~~ 137 (703)
..++++.+..+..|++.|.. |...+..=+++|+|....
T Consensus 351 i~~mReec~~l~~Elq~LlD----~ki~Ld~EI~~YRkLLeg 388 (546)
T KOG0977|consen 351 IAKMREECQQLSVELQKLLD----TKISLDAEIAAYRKLLEG 388 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhc----hHhHHHhHHHHHHHHhcc
Confidence 44566666666666666554 567899999999999843
No 313
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=74.18 E-value=28 Score=32.49 Aligned_cols=75 Identities=8% Similarity=0.039 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCchhH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCCC
Q 005307 66 LLEQQGALASRLSDLGEHHDALSQHQDGSRI-------SELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFDKRFGYR 138 (703)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK~~~~~ 138 (703)
+.+..+|..+.++++++......+....+.. +++.+.+.+==+++...++|..-=.-+.+|++.||.......
T Consensus 73 ~~~~l~ea~~~i~~i~~~~~~i~~~~~~~~~~~~~~~~~~I~~~v~~~P~~l~~a~~Fl~~yLp~~~~l~~kY~~l~~~~ 152 (199)
T PF10112_consen 73 IREILEEAKEKIRRIEKAIKRIRDLEMIEKVSRIEKIARRIFKYVEKDPERLTQARKFLYYYLPTAVKLLEKYAELESQP 152 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHCHHhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 3444445555555555554443221111111 222233333335667788888888899999999999877554
Q ss_pred Cc
Q 005307 139 FT 140 (703)
Q Consensus 139 ~~ 140 (703)
.+
T Consensus 153 ~~ 154 (199)
T PF10112_consen 153 VK 154 (199)
T ss_pred CC
Confidence 33
No 314
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=72.71 E-value=13 Score=36.80 Aligned_cols=105 Identities=16% Similarity=0.116 Sum_probs=69.1
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhccccCchhHH-HHHH------HHHHHHHHHHhhcccchhHHHHHHHHHHhhcCcc-
Q 005307 283 TLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLV-FSSI------VLLVGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR- 354 (703)
Q Consensus 283 ~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l-~~~~------~~~~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~- 354 (703)
.|.-|....|.+|.+++. =+-++=|-+.+ ..++ +.++...++.+. +++|..++.-+.-|+-+|.
T Consensus 288 sqYRwyqvlYQlGVFiSR-----SS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ft---psi~ivf~lI~~EGLlGGas 359 (409)
T KOG3880|consen 288 SQYRWYQVLYQLGVFISR-----SSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFT---PSIWIVFALILFEGLLGGAS 359 (409)
T ss_pred hcchhhheeeeeeEEEEe-----ccceEEechHHHHHHHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHhhcCchH
Confidence 456788888877654432 22222232221 2221 122444555566 9999999999999998887
Q ss_pred -hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 355 -AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 355 -~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
.-..--+.+-.++++|-.+++....+-++|..++..++-.+
T Consensus 360 YVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 360 YVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 33444456668889999999999999999888877666544
No 315
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=71.29 E-value=28 Score=32.03 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=10.1
Q ss_pred hccChhhHHHHHHhh
Q 005307 19 YYINYKLLKKKVNRY 33 (703)
Q Consensus 19 ~yi~Y~~lK~~i~~~ 33 (703)
.|||-+-.+|.||.+
T Consensus 101 EhiD~elvrkEl~nA 115 (290)
T COG4026 101 EHIDVELVRKELKNA 115 (290)
T ss_pred cccCHHHHHHHHHHH
Confidence 367777777777664
No 316
>COG1971 Predicted membrane protein [Function unknown]
Probab=70.98 E-value=84 Score=28.71 Aligned_cols=43 Identities=16% Similarity=0.379 Sum_probs=25.1
Q ss_pred HHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhh
Q 005307 554 FLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILL 596 (703)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~ 596 (703)
...+..+.....+..+|.++...+|.+.-++.|.++..++.-.
T Consensus 141 ~iG~~T~il~~~G~~IG~~~g~~~g~~ae~lgGiiLI~~G~~i 183 (190)
T COG1971 141 AIGLITLILSALGAIIGRKLGKFLGKYAEILGGIILIGIGVKI 183 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3333333444444445545556677777777777777777543
No 317
>PRK11546 zraP zinc resistance protein; Provisional
Probab=70.79 E-value=40 Score=29.23 Aligned_cols=58 Identities=22% Similarity=0.196 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCchhHHHHHHHHHHHHHHHHHHH
Q 005307 57 DQIEKIVLFLLEQQGALASRLSDLGEHHDALS--QHQDGSRISELQEAYRAVGHDLLRLL 114 (703)
Q Consensus 57 ~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~l~ 114 (703)
.++++|.+=|..+..++++.+..-+.+++.+. +++|.++.+.+.+.+.++..+|.+++
T Consensus 50 a~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 50 AAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666766677888888888888888877763 34566667777777777777776554
No 318
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=69.82 E-value=59 Score=34.84 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=14.8
Q ss_pred HHHhHHHHHHHHHHHHHhhhhccc
Q 005307 112 RLLFFVEMNATGLRKILKKFDKRF 135 (703)
Q Consensus 112 ~l~~~~~ln~~~~~KilKK~dK~~ 135 (703)
-|++|..=+.-....-=|||||-.
T Consensus 115 PlekFRkEqIG~~KE~KkKydKe~ 138 (812)
T KOG1451|consen 115 PLEKFRKEQIGTLKEEKKKYDKES 138 (812)
T ss_pred HHHHHHHHHhhhhHHHHhhhhhhh
Confidence 366776655555555567788753
No 319
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=69.59 E-value=49 Score=27.80 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=17.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHh
Q 005307 91 QDGSRISELQEAYRAVGHDLLRLLF 115 (703)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~l~~ 115 (703)
++.++++.|.+.+.++...+..|.+
T Consensus 93 ~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 93 PSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455677777777777777777653
No 320
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=68.05 E-value=77 Score=32.11 Aligned_cols=29 Identities=14% Similarity=-0.020 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHhhhhhhhHHHHHHHHh
Q 005307 605 SVPQYVGSALITFVAAEVLEGVNLSLLSR 633 (703)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (703)
..+.+.+...+.|.-.|.=.|..+.+.+.
T Consensus 104 ~~~Vly~lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 104 SRLVLYALTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 44555566666677677777888887776
No 321
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=66.75 E-value=91 Score=32.83 Aligned_cols=82 Identities=10% Similarity=0.143 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005307 49 KDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKIL 128 (703)
Q Consensus 49 ~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~Kil 128 (703)
..+...-..+++...+=...+.+++.+-++.|++++..-..++.....+.+.+.+..+..+|..++.|..-=.-...||-
T Consensus 201 R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiW 280 (424)
T PF03915_consen 201 RAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIW 280 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 45666666666666666667777777777777777766555677788889999999999999999999988777777776
Q ss_pred hh
Q 005307 129 KK 130 (703)
Q Consensus 129 KK 130 (703)
-+
T Consensus 281 E~ 282 (424)
T PF03915_consen 281 ES 282 (424)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 322
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=65.95 E-value=48 Score=36.69 Aligned_cols=121 Identities=12% Similarity=0.072 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhh-hhhHHHHHHHHHHHHHHH
Q 005307 516 KVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNI-FEERQVLLASEIIVCIGI 594 (703)
Q Consensus 516 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r-~g~r~~~~~~~~~~~i~~ 594 (703)
...+..-.+-.+++.+....+..|+...++.+...+.-.....+........ .+++++|- +||-+++.++.++..+|+
T Consensus 40 ~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l-~g~~laD~f~gry~tI~~~s~i~~~G~ 118 (571)
T KOG1237|consen 40 PFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPL-LGAFLADSFLGRYFTINIGSLISLLGL 118 (571)
T ss_pred HHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344444455556656666677788888888775555444443333333333 34488886 467777776666655554
Q ss_pred hhc-----cccc-c-------c-------c--chhHHHHHHHHHHhhhhhhhHHHHHHHHhhccC
Q 005307 595 LLS-----FHIL-V-------P-------Y--SVPQYVGSALITFVAAEVLEGVNLSLLSRVMSS 637 (703)
Q Consensus 595 ~~~-----~~~~-~-------~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (703)
.++ .... + . . ....+..+..+..+|.+..-|...++-.+.+++
T Consensus 119 ~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~ 183 (571)
T KOG1237|consen 119 FGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDE 183 (571)
T ss_pred HHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCc
Confidence 321 1100 0 0 0 122444455555667777778888888888883
No 323
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=65.32 E-value=1.1e+02 Score=30.37 Aligned_cols=27 Identities=22% Similarity=0.392 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhccc
Q 005307 104 RAVGHDLLRLLFFVEMNATGLRKILKKFDKRF 135 (703)
Q Consensus 104 ~~~~~~l~~l~~~~~ln~~~~~KilKK~dK~~ 135 (703)
..+.+.+.+++.|.+. +.+|-|||...
T Consensus 315 eNLiEalLE~QAYADv-----qavLakYDdis 341 (556)
T KOG3807|consen 315 ENLLEALLELQAYADV-----QAVLAKYDDIS 341 (556)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHhhcccc
Confidence 3445566667777664 56899999554
No 324
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=65.20 E-value=96 Score=29.31 Aligned_cols=100 Identities=18% Similarity=0.265 Sum_probs=58.0
Q ss_pred hhhhhccChhhHHHHHHhhhhhhhc-----------cchhhhhHH--HHHHHHHHHHHHHHH----------HHHHHHHH
Q 005307 15 EWQGYYINYKLLKKKVNRYTQQIQV-----------GAENRLNVL--KDFARMLDDQIEKIV----------LFLLEQQG 71 (703)
Q Consensus 15 ew~~~yi~Y~~lK~~i~~~~~~~~~-----------~~~~~~~~~--~~f~~~l~~e~~kv~----------~f~~~~~~ 71 (703)
|=.+--++|+.|-.+|.+-..+... -+..++..+ .+-...|..|.+||. +|..+.++
T Consensus 65 ~~~~s~l~~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ 144 (254)
T KOG2196|consen 65 EPAPSSLTYKTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQ 144 (254)
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5556679999999999886554322 111122111 234455556666554 35566777
Q ss_pred HHHHHHHHHHHHHHHh-----ccCCCchh------HHHHHHHHHHHHHHHHHHH
Q 005307 72 ALASRLSDLGEHHDAL-----SQHQDGSR------ISELQEAYRAVGHDLLRLL 114 (703)
Q Consensus 72 ~~~~~~~~~~~~~~~~-----~~~~~~~~------~~~~~~~~~~~~~~l~~l~ 114 (703)
|+..-+..+|.+.... ..+.|.++ .+.++.++..+..||..+-
T Consensus 145 ELE~~L~~lE~k~~~~~g~~~~~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii 198 (254)
T KOG2196|consen 145 ELEDLLDPLETKLELQSGHTYLSRADVEREQTYKMAENIDSQLKRLSEDLKQII 198 (254)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8888788888777652 12233222 3456666666776666553
No 325
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=64.84 E-value=77 Score=28.37 Aligned_cols=89 Identities=12% Similarity=0.180 Sum_probs=26.5
Q ss_pred chhhhhccChhhHHHHHHhhhhhhhcc-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 005307 14 QEWQGYYINYKLLKKKVNRYTQQIQVG-AENRLNVLKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQD 92 (703)
Q Consensus 14 ~ew~~~yi~Y~~lK~~i~~~~~~~~~~-~~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (703)
...|.+|+||-. +.++.+......+ .....+....=|..|..+.+.+ .+|+.+.+++++++++.+.. -
T Consensus 74 R~fK~Qfv~hAt--~KLr~iv~~tsancs~QVqqeL~~tf~rL~~~Vd~~-------~~eL~~eI~~L~~~i~~le~--~ 142 (171)
T PF04799_consen 74 RAFKRQFVDHAT--EKLRLIVSFTSANCSHQVQQELSSTFARLCQQVDQT-------KNELEDEIKQLEKEIQRLEE--I 142 (171)
T ss_dssp --------------------------------------HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--H
Confidence 346778888854 2233333111111 1122223344455666665555 45555555555555554321 0
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 005307 93 GSRISELQEAYRAVGHDLLRL 113 (703)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~l 113 (703)
..+.+.|+.....+..||.+.
T Consensus 143 ~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 143 QSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 112344555555555554443
No 326
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=64.76 E-value=1.2e+02 Score=31.59 Aligned_cols=80 Identities=10% Similarity=0.180 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005307 49 KDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKIL 128 (703)
Q Consensus 49 ~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~Kil 128 (703)
..|.+.-..+|+...+=...|.+++.+-++.|++++..-..++.....+.+.+.+.....+|..++.|..--.-=-.||=
T Consensus 205 R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiW 284 (426)
T smart00806 205 RAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIW 284 (426)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHH
Confidence 45666666666666666677778888888888888776555566777888899999999999999999865555444443
No 327
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=64.12 E-value=45 Score=26.43 Aligned_cols=58 Identities=10% Similarity=0.043 Sum_probs=38.5
Q ss_pred cHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhh
Q 005307 503 SIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGL 560 (703)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~ 560 (703)
.++++.+.+++-.+.+..+.+..++++.....+.|..+.....-+....|+.+++.-+
T Consensus 6 ~f~~L~r~r~r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~~v~~G~~t~g~~~g~~~~ 63 (91)
T PF04341_consen 6 EFQELVRRRRRLAWPLSAIFLVLYFGFVLLSAFAPELMATPVFPGSLTLGIVLGLGQI 63 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHcCcccCCCcCHHHHHHHHHH
Confidence 4566666556666777777888888888888888887776544235566666554433
No 328
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=63.86 E-value=45 Score=35.25 Aligned_cols=115 Identities=8% Similarity=-0.047 Sum_probs=58.4
Q ss_pred HHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccch
Q 005307 527 YAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSV 606 (703)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~ 606 (703)
++.++-....|+......|++.++..++.+..-+...++.++-. ....+.|-|-....|.....++-............
T Consensus 27 lamfg~~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~-~~~~~~g~~lP~~lG~sFafi~p~i~~~~~~g~~~ 105 (451)
T COG2233 27 LAMFGATVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQL-LGTGPGGSGLPSYLGSSFAFVAPMIAIGGTTGDGI 105 (451)
T ss_pred HHHHhcchHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHH-hhccCcccCCCeeEechHHHHHHHHHHHhccCCch
Confidence 34444444567777778899999988877665555555555433 22223444544444444444443322222101113
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccc
Q 005307 607 PQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGT 643 (703)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 643 (703)
.....+.+..++.+....+.....+.+.+||- ..|.
T Consensus 106 ~~~~G~ii~ag~~~~li~~~~~~~l~rlfPPv-VtG~ 141 (451)
T COG2233 106 AALLGGIIAAGLVYFLISPIVKIRLARLFPPV-VTGP 141 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-eEEe
Confidence 33333333334333333333222888999998 4453
No 329
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=62.83 E-value=64 Score=37.25 Aligned_cols=105 Identities=10% Similarity=0.188 Sum_probs=58.6
Q ss_pred chhhhhcc-ChhhHHHHHHhhhhhhhccchhhhhH------HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 14 QEWQGYYI-NYKLLKKKVNRYTQQIQVGAENRLNV------LKDFARMLDDQIE--KIVLFLLEQQGALASRLSDLGEHH 84 (703)
Q Consensus 14 ~ew~~~yi-~Y~~lK~~i~~~~~~~~~~~~~~~~~------~~~f~~~l~~e~~--kv~~f~~~~~~~~~~~~~~~~~~~ 84 (703)
-.|..+|- -|+.+++++...++.....++..++. ..+|.+.++++++ ++|.. +.+|+.+-++-+
T Consensus 366 ~CW~~~~~~Ty~~~~~l~~~~e~~~~~~~~~p~~~~~~C~r~~~~~~~~~~~~~~~~~n~~-------w~~rl~e~R~~v 438 (764)
T TIGR02865 366 RCWKREFDYTYSAMEELIENLEEKKDPNSKLPDEFERKCIKRKELINTTEDILNNYIINEM-------WRKRLEEGRRLV 438 (764)
T ss_pred hhhCcchHHHHHHHHHHHHHHHhcCCchhhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 45776644 68888888887765432111111111 1455555555433 23332 333333333322
Q ss_pred HHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 005307 85 DALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFDK 133 (703)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK 133 (703)
.+ .++.+.+.+.++.+|+.+-.++......-.+|.|||+.=
T Consensus 439 a~--------Ql~~~s~~l~~~a~e~~~~~~~~~~~e~~i~~~L~~~gi 479 (764)
T TIGR02865 439 AE--------QLKGVAESVEDIAKEINLEIVFHQLLEEKIIRALNKNGI 479 (764)
T ss_pred HH--------HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHCCC
Confidence 22 345566777788888888777777777777777777653
No 330
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.76 E-value=39 Score=34.03 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=17.9
Q ss_pred hhhhhccChhhHHHHHHhhhhhhh
Q 005307 15 EWQGYYINYKLLKKKVNRYTQQIQ 38 (703)
Q Consensus 15 ew~~~yi~Y~~lK~~i~~~~~~~~ 38 (703)
|+.-.-|-|+.|+|.|+..+...+
T Consensus 8 ~y~l~ripye~l~kr~r~~qk~i~ 31 (389)
T KOG0396|consen 8 EYQLFRIPYELLNKRIRHNQKVID 31 (389)
T ss_pred hchhhcCCHHHHHHHHHHhHHHHH
Confidence 444556899999999998775543
No 331
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=62.28 E-value=47 Score=27.25 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHH
Q 005307 68 EQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLL 114 (703)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 114 (703)
++..+..+|+..+|.+++.+ |+..+..+|+..+.++..++..+.
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~L---Pt~~dv~~L~l~l~el~G~~~~l~ 85 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHL---PTRDDVHDLQLELAELRGELKELS 85 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHhHHHHHH
Confidence 44556688888888888775 455566667777776666666543
No 332
>PHA02675 ORF104 fusion protein; Provisional
Probab=62.18 E-value=68 Score=24.41 Aligned_cols=40 Identities=30% Similarity=0.380 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCCC
Q 005307 99 LQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFDKRFGYR 138 (703)
Q Consensus 99 ~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK~~~~~ 138 (703)
+-+.+.+...-|.+|++-.+-=+.+.-++-||-|=+++..
T Consensus 49 i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKIDVQTG~~ 88 (90)
T PHA02675 49 ITDCCRETGARLDRLERHLETLREALLKLNTKIDVQTGYS 88 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceecccc
Confidence 3345555556666666666666777788889988877653
No 333
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=61.22 E-value=95 Score=32.27 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005307 54 MLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALS 88 (703)
Q Consensus 54 ~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~ 88 (703)
.|..++.+=-.|+.+...|-.-|.++||+++.++.
T Consensus 237 ~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~ 271 (395)
T PF10267_consen 237 KLKEQYQREYQFILEALQEERYRYERLEEQLNDLT 271 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444444445777777777777778888777653
No 334
>PRK11469 hypothetical protein; Provisional
Probab=60.69 E-value=1.4e+02 Score=27.53 Aligned_cols=51 Identities=20% Similarity=0.487 Sum_probs=32.7
Q ss_pred ccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhh
Q 005307 546 WSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILL 596 (703)
Q Consensus 546 ~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~ 596 (703)
.++........+..+.....+..+|.++.++++++.-++-|.++..+|+-+
T Consensus 131 ~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI~iGi~i 181 (188)
T PRK11469 131 VNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLIGIGVQI 181 (188)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555666666666756667788887777788888777543
No 335
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=59.40 E-value=41 Score=36.39 Aligned_cols=38 Identities=0% Similarity=0.042 Sum_probs=26.8
Q ss_pred HHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 626 VNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 626 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
..+.+..+..+.+ +..+..+.+ ...+++|.++++.+..
T Consensus 164 LFW~fAN~itt~~-eAKRfYpl~--g~ganigli~sG~~~~ 201 (491)
T PF03219_consen 164 LFWGFANEITTVE-EAKRFYPLF--GLGANIGLIFSGQLTS 201 (491)
T ss_pred HHHHHHHhcCCHH-HHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 4567788888777 667778887 4477777777776444
No 336
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=59.37 E-value=85 Score=30.30 Aligned_cols=81 Identities=17% Similarity=0.101 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCC---chhHHHHHH------HHHHHHHHHHHHHhHH
Q 005307 48 LKDFARMLDDQIEKI-VLFLLEQQGALASRLSDLGEHHDALSQHQD---GSRISELQE------AYRAVGHDLLRLLFFV 117 (703)
Q Consensus 48 ~~~f~~~l~~e~~kv-~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------~~~~~~~~l~~l~~~~ 117 (703)
..+++... +|++++ ++|+..|.+.+.+|+..|+.++.++.+-.- .+..++|++ ...++|+++. ..=+
T Consensus 15 drrr~~~~-~e~~~l~~~f~elkeq~yk~kLa~Lq~~Leel~~g~~~eYl~~~~~L~~~~kerl~~aely~e~~--~e~v 91 (291)
T KOG4466|consen 15 DRRRANEE-SEMSNLEKQFSELKEQMYKDKLAQLQAQLEELGQGTAPEYLKRVKKLDESRKERLRVAELYREYC--VERV 91 (291)
T ss_pred HHhhhhhh-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 34554444 445544 569999999999999999999999865322 122333333 3344444432 2334
Q ss_pred HHHHHHHHHHHhhh
Q 005307 118 EMNATGLRKILKKF 131 (703)
Q Consensus 118 ~ln~~~~~KilKK~ 131 (703)
+-+|.-=.|..||+
T Consensus 92 ~~eYe~E~~aAk~e 105 (291)
T KOG4466|consen 92 EREYECEIKAAKKE 105 (291)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555554
No 337
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=59.25 E-value=95 Score=25.16 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=44.0
Q ss_pred ChhhHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHH
Q 005307 22 NYKLLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQE 101 (703)
Q Consensus 22 ~Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (703)
-|++++|++++....-+- ..+.-.+|.+.|-+|.++= ..+-.+++.++++...++... ...+....+.+
T Consensus 22 ~~ek~~klvDelVkkGel----n~eEak~~vddl~~q~k~~---~~e~e~K~~r~i~~ml~~~~~----~r~~~~~~l~~ 90 (108)
T COG3937 22 TAEKVQKLVDELVKKGEL----NAEEAKRFVDDLLRQAKEA---QGELEEKIPRKIEEMLSDLEV----ARQSEMDELTE 90 (108)
T ss_pred HHHHHHHHHHHHHHcCCC----CHHHHHHHHHHHHHHHHHH---hhhHHHhhhHHHHHHHhhccc----cccchHHHHHH
Confidence 467777777776643221 1122367888887777732 112223344555555544441 11233455666
Q ss_pred HHHHHHHHHHHHHh
Q 005307 102 AYRAVGHDLLRLLF 115 (703)
Q Consensus 102 ~~~~~~~~l~~l~~ 115 (703)
.+.++-+++.+|++
T Consensus 91 rvd~Lerqv~~Len 104 (108)
T COG3937 91 RVDALERQVADLEN 104 (108)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666666654
No 338
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=58.85 E-value=1.1e+02 Score=35.39 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccc
Q 005307 102 AYRAVGHDLLRLLFFVEMNATGLRKILKKFDKRF 135 (703)
Q Consensus 102 ~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK~~ 135 (703)
....+-.|+..+++=..-+.....|.+|||+-..
T Consensus 907 ~~kkle~e~~~~~~e~~~~~k~v~~l~~k~~wi~ 940 (1174)
T KOG0933|consen 907 ERKKLEHEVTKLESEKANARKEVEKLLKKHEWIG 940 (1174)
T ss_pred hHHHHHhHHHHhhhhHHHHHHHHHHHHHhccchh
Confidence 3355667777888888889999999999998654
No 339
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=58.85 E-value=1.3e+02 Score=30.11 Aligned_cols=59 Identities=10% Similarity=0.059 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHh
Q 005307 57 DQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLF 115 (703)
Q Consensus 57 ~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 115 (703)
.|+.|+..=+....-++..+...+-++.-..-+-++....+++.+.+.|+-++++.|++
T Consensus 252 ~efak~~G~lvna~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k 310 (320)
T TIGR01834 252 EENAKVHGKFINALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKK 310 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333322222224455566666666666666666654
No 340
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=58.77 E-value=20 Score=31.48 Aligned_cols=50 Identities=20% Similarity=0.121 Sum_probs=33.0
Q ss_pred chhHHHHHHHHHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHH
Q 005307 336 NSIAVLLIGRLFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMAC 387 (703)
Q Consensus 336 ~~~~~l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~l 387 (703)
+++..+++.-++.|+| . .+.+..++--+++++-|..+|+-.+-.+++-+.
T Consensus 95 P~~~~~~~S~~~Fg~g--llGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 95 PPWAVLLVSLVFFGLG--LLGISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred CchHHHHHHHHHHHHH--HHhhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 4444444444444433 3 456667777788888899999888888777654
No 341
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=58.70 E-value=68 Score=35.29 Aligned_cols=81 Identities=12% Similarity=0.126 Sum_probs=49.8
Q ss_pred ChhhHHHHHHhhhhhhhccchhhh--hHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 22 NYKLLKKKVNRYTQQIQVGAENRL--NVLKDFARMLD------------------DQIEKIVLFLLEQQGALASRLSDLG 81 (703)
Q Consensus 22 ~Y~~lK~~i~~~~~~~~~~~~~~~--~~~~~f~~~l~------------------~e~~kv~~f~~~~~~~~~~~~~~~~ 81 (703)
+.+.|++.|++++.+.....++.. +...+|.+.+. .++.+...||.++..++..+...++
T Consensus 72 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (525)
T TIGR02231 72 RLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAE 151 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888887765443322211 22345655554 4577888888888888888877777
Q ss_pred HHHHHhccCCCchhHHHHHHHHHHHHHHHHHHH
Q 005307 82 EHHDALSQHQDGSRISELQEAYRAVGHDLLRLL 114 (703)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 114 (703)
.++.+ +++.+.++..+|..+.
T Consensus 152 ~~~~~------------~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 152 RRIRE------------LEKQLSELQNELNALL 172 (525)
T ss_pred HHHHH------------HHHHHHHHHHHHHhhc
Confidence 66544 4455555555555443
No 342
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=58.50 E-value=1.3e+02 Score=30.13 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=20.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHh
Q 005307 91 QDGSRISELQEAYRAVGHDLLRLLF 115 (703)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~l~~ 115 (703)
++....+.+.+.+.++.++++.|++
T Consensus 269 PTr~evd~l~k~l~eLrre~r~Lkr 293 (293)
T PF09712_consen 269 PTRSEVDELYKRLHELRREVRALKR 293 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5667788888888888888888864
No 343
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=56.90 E-value=3.6e+02 Score=31.11 Aligned_cols=13 Identities=8% Similarity=-0.069 Sum_probs=5.4
Q ss_pred HHHHHHHHHHhhh
Q 005307 381 SALGMACGPALAC 393 (703)
Q Consensus 381 ~~~G~~lgp~i~~ 393 (703)
..++.+++.+++.
T Consensus 110 M~lT~livAL~a~ 122 (810)
T TIGR00844 110 MTSGWLVIALFVW 122 (810)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 344
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.40 E-value=1.1e+02 Score=29.93 Aligned_cols=59 Identities=24% Similarity=0.343 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhH
Q 005307 53 RMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFF 116 (703)
Q Consensus 53 ~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 116 (703)
+.|+.|+.+|.+--..+.+|+.+.|.+++..+..+.+ +.++++..+..+-.++..-++|
T Consensus 139 ~~l~~~va~v~q~~~~qq~Els~~L~~l~~~~~~~s~-----~~~k~esei~~Ik~lvln~~~f 197 (300)
T KOG2629|consen 139 NALMDEVAQVSQLLATQQSELSRALASLKNTLVQLSR-----NIEKLESEINTIKQLVLNMSNF 197 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHHHHHHHHHHHHHHHhccccc
Confidence 3445555555555555555555555555444333221 3344444444444444444433
No 345
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=56.04 E-value=87 Score=35.67 Aligned_cols=51 Identities=8% Similarity=0.056 Sum_probs=29.1
Q ss_pred hhhhhcccc----CchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc
Q 005307 302 YFSAWSNRS----YLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR 354 (703)
Q Consensus 302 ~~G~l~Dr~----Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~ 354 (703)
+.+.++|.= ||.+-++++++++ ++++...+.. +..|.+.++-++.+++.++
T Consensus 42 ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~--~~p~lf~~~l~~~tf~~~m 97 (704)
T TIGR01666 42 IAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLF--GKPWLFAVGLTVSTFGFIM 97 (704)
T ss_pred HhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHH
Confidence 345667763 4545555665544 6666555541 5666666666666665443
No 346
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=56.01 E-value=84 Score=32.33 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=10.2
Q ss_pred chhhhhccChhhHHHHHHhh
Q 005307 14 QEWQGYYINYKLLKKKVNRY 33 (703)
Q Consensus 14 ~ew~~~yi~Y~~lK~~i~~~ 33 (703)
.+||.|+=.=+.+++.|+..
T Consensus 216 kDWR~hleqm~~~~~~I~~~ 235 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESA 235 (359)
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45665554444444444443
No 347
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=55.98 E-value=3.3e+02 Score=30.35 Aligned_cols=51 Identities=12% Similarity=-0.011 Sum_probs=22.7
Q ss_pred cchhHHHHHHhhhhhhhhHHHHHH---hhhhhhhhhH---HHHHHHHHHHHHHHhhc
Q 005307 547 STSRVAIFLACLGLTVLPVNIIVG---NYISNIFEER---QVLLASEIIVCIGILLS 597 (703)
Q Consensus 547 s~~~~g~~~~~~~~~~~~~~~~~~---~~l~~r~g~r---~~~~~~~~~~~i~~~~~ 597 (703)
++...++.+..++++..+-.++++ +++..|.|+. .-...|.++.++++.++
T Consensus 323 ~~~~g~~~l~~~gLG~~~Plll~~~~~~~~lpk~g~wm~~~k~~~G~~ll~~~~~ll 379 (571)
T PRK00293 323 DLLLGGLTLYLLALGMGLPLILITTFGNKLLPKSGPWMNQVKTAFGFVLLALPVFLL 379 (571)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555655533333322 1333343332 11245666666665443
No 348
>PHA01750 hypothetical protein
Probab=55.70 E-value=62 Score=23.27 Aligned_cols=26 Identities=19% Similarity=0.377 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 54 MLDDQIEKIVLFLLEQQGALASRLSDLGEH 83 (703)
Q Consensus 54 ~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~ 83 (703)
.|..|++.++ .|.+++.+++.+++.+
T Consensus 46 NL~~ei~~~k----ikqDnl~~qv~eik~k 71 (75)
T PHA01750 46 NLKTEIEELK----IKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHH----HhHHHHHHHHHHHHHh
Confidence 3444444444 3444444444444433
No 349
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=54.50 E-value=71 Score=24.78 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005307 53 RMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDAL 87 (703)
Q Consensus 53 ~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~ 87 (703)
+.++.|++|.. .|..++..|++.|+.+..+.
T Consensus 4 eKi~~eieK~k----~Kiae~Q~rlK~Le~qk~E~ 34 (83)
T PF14193_consen 4 EKIRAEIEKTK----EKIAELQARLKELEAQKTEA 34 (83)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 46788999964 88999999999999988774
No 350
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=54.46 E-value=1.6e+02 Score=26.32 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 52 ARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDA 86 (703)
Q Consensus 52 ~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (703)
...|+.|+++...=+..+..++..-.++++.+...
T Consensus 20 l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~ 54 (165)
T PF01025_consen 20 LEELEKEIEELKERLLRLQAEFENYRKRLEKEKEE 54 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566677776666666666666555555554444
No 351
>PF05149 Flagellar_rod: Paraflagellar rod protein; InterPro: IPR007824 This family consists of several eukaryotic paraflagellar rod component proteins. The eukaryotic flagellum represents one of the most complex macromolecular structures found in any organism and contains more than 250 proteins []. In addition to its locomotive role, the flagellum is probably involved in nutrient uptake since receptors for host low-density lipoproteins are localised on the flagellar membrane as well as on the flagellar pocket membrane [].; GO: 0005516 calmodulin binding, 0009434 microtubule-based flagellum
Probab=53.88 E-value=2.3e+02 Score=28.01 Aligned_cols=21 Identities=33% Similarity=0.273 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHhhhhccc
Q 005307 115 FFVEMNATGLRKILKKFDKRF 135 (703)
Q Consensus 115 ~~~~ln~~~~~KilKK~dK~~ 135 (703)
.|-..=..|+.+|.||+||.-
T Consensus 133 ~~~~~V~~~~~~l~~~~d~~~ 153 (289)
T PF05149_consen 133 SLEEYVQEGCPKLPKKHDKAQ 153 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334579999999999976
No 352
>COG3619 Predicted membrane protein [Function unknown]
Probab=53.79 E-value=2e+02 Score=27.31 Aligned_cols=65 Identities=18% Similarity=0.091 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhccch--------hHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCc
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTA--------DNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYL 312 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Gr 312 (703)
....+.+.+.+++.+++....-.. ....-++.-++...........+..++|......+..+..|
T Consensus 12 l~~lLa~~aGfvDa~~f~~~gg~F~s~~TGN~v~~gi~l~~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~ 84 (226)
T COG3619 12 LGLLLALVAGFVDAFGFLHLGGVFVSFMTGNLVLLGIELAEGDAALAVLLLLPILAFVLGVAAAELISRRATR 84 (226)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCchhhheeccHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345566667777777663322221 12222232334555566666666767775555555544544
No 353
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=53.78 E-value=1.9e+02 Score=27.02 Aligned_cols=30 Identities=13% Similarity=0.139 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 53 RMLDDQIEKIVLFLLEQQGALASRLSDLGE 82 (703)
Q Consensus 53 ~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~ 82 (703)
...+.||||.+.|-..-.+++..-+...+.
T Consensus 5 ~~~e~~le~~~k~i~kLiK~c~~~i~a~k~ 34 (207)
T cd07635 5 RAHEAELERTNRFIKELLKDGKNLIAATKS 34 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999988888877777665555443
No 354
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=53.51 E-value=58 Score=31.61 Aligned_cols=102 Identities=11% Similarity=0.051 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhccc-cCchhHHHH----HHHHHHHHHHHH--hhcc-cchhHHHHHHHHHHhhc-Ccchh
Q 005307 286 GVIIGSMAVAQVFSSVYFSAWSNR-SYLKPLVFS----SIVLLVGNTLYA--MAYD-LNSIAVLLIGRLFCGLG-SARAV 356 (703)
Q Consensus 286 g~i~s~~~l~~~i~~~~~G~l~Dr-~Grr~~l~~----~~~~~~~~~~~~--~a~~-~~~~~~l~i~r~l~Gi~-~g~~~ 356 (703)
....-++..|.++|....|.+... +.||+.+.. ++++.+-..+++ +.+. ..++..+++.-++.|++ .|.-.
T Consensus 144 ~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~ 223 (267)
T PF07672_consen 144 PIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQG 223 (267)
T ss_pred HHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhH
Confidence 344455666777777888888765 557765542 233332222222 1110 02466777888888776 34422
Q ss_pred hhHHhhccCChhhhhhHHHHHHHHHHHHHHH
Q 005307 357 NRRYISDCVPLKLRMRASAGFVSASALGMAC 387 (703)
Q Consensus 357 ~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~l 387 (703)
+.-++..-.+..++.+.--.++..+++|.++
T Consensus 224 ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~ 254 (267)
T PF07672_consen 224 VILNLPHEYKGYNPKKIGIQFGLIWGFGYIF 254 (267)
T ss_pred HHhcChhhhcCCCcceehhHHHHHHHHHHHH
Confidence 2233333333223323333444445555543
No 355
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.24 E-value=2e+02 Score=29.40 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005307 96 ISELQEAYRAVGHDLLRLLFFVEMNATGLRKI 127 (703)
Q Consensus 96 ~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~Ki 127 (703)
.+++-+...++...+++++++++.-.-..+++
T Consensus 379 ~d~v~k~~~~l~~qiremkq~v~~t~ni~~~~ 410 (497)
T KOG3838|consen 379 NDDVAKVQALLLGQIREMKQLVEMTDNIVRMA 410 (497)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555677888899999999997777666665
No 356
>PRK11020 hypothetical protein; Provisional
Probab=53.06 E-value=81 Score=25.75 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHH
Q 005307 70 QGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFV 117 (703)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 117 (703)
.+.+.+|+..++.++.....+.|.+.+..+.+....+..++..|++=+
T Consensus 7 iq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~ 54 (118)
T PRK11020 7 IKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQ 54 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777777666777777788888888888888877644
No 357
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=52.30 E-value=50 Score=29.00 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=26.3
Q ss_pred chhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhh
Q 005307 605 SVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGL 648 (703)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~ 648 (703)
++..++..++++++|. .++.|.+++..-.++ +.|+..|.-
T Consensus 96 ~~~~~~~S~~~Fg~gl---lGisYGilSaSWD~~-r~GSllG~~ 135 (153)
T PF11947_consen 96 PWAVLLVSLVFFGLGL---LGISYGILSASWDPE-REGSLLGWE 135 (153)
T ss_pred chHHHHHHHHHHHHHH---HhhhhhhcccccCCC-CCCCcccHH
Confidence 3444555555544443 346778888888887 789888875
No 358
>COG1422 Predicted membrane protein [Function unknown]
Probab=51.21 E-value=59 Score=29.80 Aligned_cols=39 Identities=15% Similarity=0.247 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHH
Q 005307 68 EQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAV 106 (703)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (703)
+|.+|++++.++++++.++..+++|.++.+++++.=.|.
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem 110 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEM 110 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 566788888888888888777777777776666554433
No 359
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=51.03 E-value=2.2e+02 Score=26.81 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=5.2
Q ss_pred hhHHHHHHhh
Q 005307 24 KLLKKKVNRY 33 (703)
Q Consensus 24 ~~lK~~i~~~ 33 (703)
++||+..|-+
T Consensus 46 ~eLk~qnkli 55 (230)
T PF03904_consen 46 QELKRQNKLI 55 (230)
T ss_pred HHHHHhhHHH
Confidence 4566555533
No 360
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=50.90 E-value=3.3e+02 Score=28.93 Aligned_cols=81 Identities=11% Similarity=0.218 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccC--CCchhHHHHHHHHH-----HHHHHHHHHHhHHH
Q 005307 49 KDFARMLDDQIEKIVLFLLEQQGALA---SRLSDLGEHHDALSQH--QDGSRISELQEAYR-----AVGHDLLRLLFFVE 118 (703)
Q Consensus 49 ~~f~~~l~~e~~kv~~f~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~ 118 (703)
+.-.+.+..||+||..|-+...+.-. +.++.|++.++.+..- ...++..+|.+++. +-..|-..++.| .
T Consensus 111 ~~I~~k~g~~L~~v~~~~~~~~~~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~y-r 189 (508)
T PF00901_consen 111 KKIIEKFGNDLEKVYKFMKGQEKVEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEY-R 189 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH-H
Confidence 44566777899999999986655433 3566777776654320 11223333444331 122333334444 4
Q ss_pred HHHHHHHHHHhh
Q 005307 119 MNATGLRKILKK 130 (703)
Q Consensus 119 ln~~~~~KilKK 130 (703)
=|+-++++.++.
T Consensus 190 ~ki~aL~~aIe~ 201 (508)
T PF00901_consen 190 QKIDALKNAIEV 201 (508)
T ss_pred HHHHHHHHHHHH
Confidence 477777777654
No 361
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=50.80 E-value=2.3e+02 Score=28.02 Aligned_cols=64 Identities=22% Similarity=0.230 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 005307 59 IEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILK 129 (703)
Q Consensus 59 ~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilK 129 (703)
++.+.+-|.....++.++++.+++++..- ......+.+.++.+++..+++...-+...+.++++
T Consensus 116 l~~~~~~~~~~l~~l~~~l~~le~~~~~~-------~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~ 179 (292)
T PF01544_consen 116 LDEIVDDYFEVLEELEDELDELEDELDDR-------PSNELLRELFDLRRELSRLRRSLSPLREVLQRLLR 179 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHT-------TTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------cchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44466667777788888888888887321 11233355566778888888988888888888887
No 362
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=50.58 E-value=1.9e+02 Score=27.41 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHh
Q 005307 52 ARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLF 115 (703)
Q Consensus 52 ~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 115 (703)
...+..|++.||.=-+....+...++..|+.+-.++.. +-..+..++.++-.++..|++
T Consensus 152 l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~-----kn~eie~a~~~Le~ei~~l~~ 210 (221)
T PF05700_consen 152 LAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVS-----KNLEIEVACEELEQEIEQLKR 210 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777777888888888887666433 233455666666666666654
No 363
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=50.50 E-value=2.4e+02 Score=27.06 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=23.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhccc
Q 005307 109 DLLRLLFFVEMNATGLRKILKKFDKRF 135 (703)
Q Consensus 109 ~l~~l~~~~~ln~~~~~KilKK~dK~~ 135 (703)
.|..|++|.++|.|=|-+|-+-|.++.
T Consensus 197 ~L~ELESFKEinTtwfNgmksEWA~V~ 223 (353)
T PF01540_consen 197 VLNELESFKEINTTWFNGMKSEWARVQ 223 (353)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 466899999999999999988888765
No 364
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=50.24 E-value=2.2e+02 Score=26.65 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 53 RMLDDQIEKIVLFLLEQQGALASRLSDL 80 (703)
Q Consensus 53 ~~l~~e~~kv~~f~~~~~~~~~~~~~~~ 80 (703)
...+.|++|.+.+.+.-.+++..-++..
T Consensus 5 ~~~E~~le~~~k~ik~liK~~k~~i~A~ 32 (207)
T cd07636 5 KSHEAELDKTNKFIKELIKDGKSLIAAL 32 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777776666665555443
No 365
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=50.08 E-value=1.6e+02 Score=25.05 Aligned_cols=35 Identities=3% Similarity=-0.077 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 52 ARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDA 86 (703)
Q Consensus 52 ~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (703)
++.|+.|++.+..=-..+.++...+-+.++..+..
T Consensus 29 l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~ 63 (126)
T PF09403_consen 29 LNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAE 63 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777776655555555555555555555444
No 366
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=49.51 E-value=4.4e+02 Score=29.92 Aligned_cols=28 Identities=4% Similarity=-0.121 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHH
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYS 275 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (703)
...+.++++.++.-+|++++......+.
T Consensus 351 ai~f~lfFGmM~gD~GyGLil~l~~~~l 378 (646)
T PRK05771 351 AIFFPLFFGMMLGDAGYGLLLLLIGLLL 378 (646)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4556677777777788888877655544
No 367
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=49.45 E-value=1e+02 Score=35.20 Aligned_cols=52 Identities=4% Similarity=-0.013 Sum_probs=29.2
Q ss_pred hhhhhhccccC----chhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc
Q 005307 301 VYFSAWSNRSY----LKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR 354 (703)
Q Consensus 301 ~~~G~l~Dr~G----rr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~ 354 (703)
.+++.++|.-| |.+-++++++++ ++++...+.. +..|.+.++-++.+++.++
T Consensus 41 ~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~--~~p~~~~~~l~~~tf~~~m 97 (701)
T TIGR01667 41 IIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLF--PKPWLFPFLLTLLTFGFIL 97 (701)
T ss_pred hHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHH
Confidence 34555677644 455566665544 6666655541 5556666666666665443
No 368
>PRK14147 heat shock protein GrpE; Provisional
Probab=49.43 E-value=1.3e+02 Score=27.31 Aligned_cols=14 Identities=29% Similarity=0.237 Sum_probs=7.3
Q ss_pred HHHHHHHhhhhccc
Q 005307 122 TGLRKILKKFDKRF 135 (703)
Q Consensus 122 ~~~~KilKK~dK~~ 135 (703)
.|+.-|.|++.+..
T Consensus 97 ~Gv~mi~k~l~~~L 110 (172)
T PRK14147 97 DGLELTYKQLLKVA 110 (172)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555543
No 369
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=48.21 E-value=2.7e+02 Score=28.12 Aligned_cols=20 Identities=20% Similarity=0.345 Sum_probs=10.2
Q ss_pred hccchhhhhccChhhHHHHHHh
Q 005307 11 TQIQEWQGYYINYKLLKKKVNR 32 (703)
Q Consensus 11 ~~~~ew~~~yi~Y~~lK~~i~~ 32 (703)
...=|||.+-+ +.||.-+.+
T Consensus 132 ~~WYeWR~kll--egLk~~L~~ 151 (312)
T smart00787 132 KMWYEWRMKLL--EGLKEGLDE 151 (312)
T ss_pred HHHHHHHHHHH--HHHHHHHHH
Confidence 33457777653 344444443
No 370
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=48.00 E-value=2.3e+02 Score=28.69 Aligned_cols=62 Identities=18% Similarity=0.105 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 005307 62 IVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKK 130 (703)
Q Consensus 62 v~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK 130 (703)
+.+=|....+++.++++.+|+++..- .. .+..+.+.++.+++..+++...-|...+.++.+.
T Consensus 143 ivd~~~~~l~~l~~~~~~le~~l~~~---~~----~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~ 204 (318)
T TIGR00383 143 IIDSYFPLLENIEDELEELEDEIISG---PT----STLMDEILSLRTELLALRRSLWPLRDVLNFLLRK 204 (318)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHhcC---CC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44445555666666666666665331 11 2334567778899999999999999999998654
No 371
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=47.74 E-value=1.9e+02 Score=33.13 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 005307 94 SRISELQEAYRAVGHDLLRLL 114 (703)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~~l~ 114 (703)
...+.+++.+.+.+.++.++.
T Consensus 685 ~Q~~~I~~iL~~~~~~I~~~v 705 (717)
T PF10168_consen 685 SQKRTIKEILKQQGEEIDELV 705 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777776666543
No 372
>PRK14139 heat shock protein GrpE; Provisional
Probab=47.22 E-value=1.4e+02 Score=27.37 Aligned_cols=15 Identities=27% Similarity=0.503 Sum_probs=8.7
Q ss_pred HHHHHHHHhhhhccc
Q 005307 121 ATGLRKILKKFDKRF 135 (703)
Q Consensus 121 ~~~~~KilKK~dK~~ 135 (703)
..|+.-|.|++.+..
T Consensus 110 ~~Gv~mi~k~l~~vL 124 (185)
T PRK14139 110 REGVELTLKQLTSAF 124 (185)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356666666666554
No 373
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.90 E-value=1.4e+02 Score=28.00 Aligned_cols=33 Identities=9% Similarity=0.164 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 54 MLDDQIEKIVLFLLEQQGALASRLSDLGEHHDA 86 (703)
Q Consensus 54 ~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (703)
.+..|++.++.=.++...|+.++++..++.+.+
T Consensus 104 ~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 136 (206)
T PRK10884 104 TLTDKLNNIDNTWNQRTAEMQQKVAQSDSVING 136 (206)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444455555555554444443
No 374
>PF01581 FARP: FMRFamide related peptide family; InterPro: IPR002544 The neuropeptide Phe-Met-Arg-Phe-NH2 (FMRFamide) is a potent cardioactive neuropeptide in Lymnaea stagnalis []. FMRFamide (Phe-Met-Arg-Phe-NH2) was first demonstrated to be cardioactive in several molluscan species. FMRFamide is now known to be cardioexcitatory in mammals, to inhibit morphine-induced antinociception, and to block morphine-, defeat-, and deprivation-induced feeding []. Thirteen neuropeptides varying in length from 7 to 11 residues and ending C-terminally in -Phe-Met-Arg-Phe-NH2 (calliFMRFamides 1-13) and one dodecapeptide ending in -Met-Ile-Arg-Phe-NH2 (calliMIRFamide 1) have been isolated from thoracic ganglia of the blowfly Calliphora vomitoria. Results indicate that the N terminus (in addition to the C terminus as previously found for FMRFamides of other organisms) is crucial for at least some biological activities [].; GO: 0007218 neuropeptide signaling pathway
Probab=46.88 E-value=7.3 Score=17.41 Aligned_cols=6 Identities=33% Similarity=1.049 Sum_probs=4.8
Q ss_pred CCCchh
Q 005307 1 MVAFGK 6 (703)
Q Consensus 1 ~mkFg~ 6 (703)
+|+|||
T Consensus 6 ~~RFGr 11 (11)
T PF01581_consen 6 FMRFGR 11 (11)
T ss_pred ccccCC
Confidence 589996
No 375
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=46.86 E-value=2e+02 Score=29.33 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=12.4
Q ss_pred hhccchhhhhccChhhHHHHHHhh
Q 005307 10 ETQIQEWQGYYINYKLLKKKVNRY 33 (703)
Q Consensus 10 ~~~~~ew~~~yi~Y~~lK~~i~~~ 33 (703)
....=||+.+-+ +.||..+.+.
T Consensus 136 K~~WYeWR~~ll--~gl~~~L~~~ 157 (325)
T PF08317_consen 136 KKMWYEWRMQLL--EGLKEGLEEN 157 (325)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHH
Confidence 344567887765 4555554443
No 376
>PRK11637 AmiB activator; Provisional
Probab=46.57 E-value=2.1e+02 Score=30.56 Aligned_cols=13 Identities=8% Similarity=-0.335 Sum_probs=8.1
Q ss_pred hhhhhhccccCch
Q 005307 301 VYFSAWSNRSYLK 313 (703)
Q Consensus 301 ~~~G~l~Dr~Grr 313 (703)
|+-|.++.+||.+
T Consensus 310 Pv~g~i~~~fg~~ 322 (428)
T PRK11637 310 PVRGPTLHRFGEQ 322 (428)
T ss_pred CCCCCccCCCCCC
Confidence 4456677777753
No 377
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=46.52 E-value=1.1e+02 Score=23.90 Aligned_cols=55 Identities=18% Similarity=0.385 Sum_probs=33.6
Q ss_pred hhhHHHHHHhhhhhhhccchhhhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 005307 23 YKLLKKKVNRYTQQIQVGAENRLNVLKDFA---RMLDDQIEKIVLFLLEQQGALA-SRLSDLGE 82 (703)
Q Consensus 23 Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~---~~l~~e~~kv~~f~~~~~~~~~-~~~~~~~~ 82 (703)
.+.||+.|+..+...+... ....|- ..|..|+.+...||...+.|.. ..+..|++
T Consensus 26 ~~~L~eEI~~Lr~qve~nP-----evtr~A~EN~rL~ee~rrl~~f~~~gerE~l~~eis~L~~ 84 (86)
T PF12711_consen 26 NEALKEEIQLLREQVEHNP-----EVTRFAMENIRLREELRRLQSFYVEGEREMLLQEISELRD 84 (86)
T ss_pred HHHHHHHHHHHHHHHHhCH-----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3788888888875544322 223332 2578899999999976665543 33444443
No 378
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=46.07 E-value=2.6e+02 Score=30.21 Aligned_cols=133 Identities=12% Similarity=0.076 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhH---------------
Q 005307 251 LLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPL--------------- 315 (703)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~--------------- 315 (703)
..+.+..+..-+++...-.+...=.-+.|++.+..+++.-...=..++.+...|+++. |++|+
T Consensus 281 ~~li~ilL~~KigF~a~da~T~LKLlEkG~~KE~LAl~~li~~P~qii~~~~~~Kws~--g~~P~~~~~~~l~~~~~~~~ 358 (544)
T PF13000_consen 281 QTLIIILLTAKIGFQANDAVTSLKLLEKGLSKEDLALLVLIDFPFQIILPYYIGKWSA--GSPPLDVDNKALPNFSRANK 358 (544)
T ss_pred HHHHHHHHHHHhccccchhhhHHHHHHcCCCHHHhHHHHHHhhhHHHHHHHHhhhhhc--CCCccccccccccccccccc
Confidence 3344444445555544444445556677999999888776655555666666666653 33321
Q ss_pred ---HHHH--------HHHHHHHHHHH-----hhcccc-------hhH-HHHHHHHHHhhcCcc--hhhhHHhhccCChhh
Q 005307 316 ---VFSS--------IVLLVGNTLYA-----MAYDLN-------SIA-VLLIGRLFCGLGSAR--AVNRRYISDCVPLKL 369 (703)
Q Consensus 316 ---l~~~--------~~~~~~~~~~~-----~a~~~~-------~~~-~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~ 369 (703)
++++ +-.+.+-++.+ ..+..| .+. .+++.-++.-+..-. ....++-+.+.+|.-
T Consensus 359 ~~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~I 438 (544)
T PF13000_consen 359 IIRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAI 438 (544)
T ss_pred hhhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Confidence 1110 00111111111 111112 122 233344555555444 778888899999999
Q ss_pred hhhHHHHHHHHHHHHH
Q 005307 370 RMRASAGFVSASALGM 385 (703)
Q Consensus 370 R~~~~~~~~~~~~~G~ 385 (703)
=|..|.+.+...++|.
T Consensus 439 GGTYMTLLNTvSNLGG 454 (544)
T PF13000_consen 439 GGTYMTLLNTVSNLGG 454 (544)
T ss_pred chHHHHHHHHHHhcCC
Confidence 9999999999988876
No 379
>KOG4094 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.92 E-value=38 Score=28.86 Aligned_cols=12 Identities=17% Similarity=0.299 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 005307 65 FLLEQQGALASR 76 (703)
Q Consensus 65 f~~~~~~~~~~~ 76 (703)
|+.+|++-+.++
T Consensus 102 F~~eKedFi~~k 113 (178)
T KOG4094|consen 102 FDREKEDFIERK 113 (178)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 380
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=45.71 E-value=2.9e+02 Score=28.56 Aligned_cols=23 Identities=17% Similarity=0.479 Sum_probs=16.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHH
Q 005307 91 QDGSRISELQEAYRAVGHDLLRL 113 (703)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~l 113 (703)
.|.....++|.++..+..|+..+
T Consensus 325 tD~sPlv~IKqAl~kLk~EI~qM 347 (359)
T PF10498_consen 325 TDGSPLVKIKQALTKLKQEIKQM 347 (359)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Confidence 34566778888888888887754
No 381
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=45.62 E-value=2e+02 Score=30.56 Aligned_cols=38 Identities=8% Similarity=-0.150 Sum_probs=25.4
Q ss_pred HHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHH
Q 005307 532 LLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVG 570 (703)
Q Consensus 532 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~ 570 (703)
-....|....... .++.+...+....-+++.++.++-+
T Consensus 21 ~~i~~p~iv~~~~-l~~~~~~~li~at~~~sgi~Tllq~ 58 (415)
T TIGR00801 21 GTVLVPLLVGLAP-LSAEQTQYLVSISLLTSGIGTLLQL 58 (415)
T ss_pred HHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666 8888888777776667767766655
No 382
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=45.37 E-value=84 Score=22.07 Aligned_cols=40 Identities=18% Similarity=0.344 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005307 49 KDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALS 88 (703)
Q Consensus 49 ~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~ 88 (703)
.+..+.+..-++.+..=...|..|...|+..||+.+..+.
T Consensus 9 ~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~ 48 (54)
T PF06825_consen 9 QNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLM 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4445555555556666666777777777777777776643
No 383
>PF13097 CENP-U: CENP-A nucleosome associated complex (NAC) subunit
Probab=42.88 E-value=2.5e+02 Score=25.26 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 005307 96 ISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFDK 133 (703)
Q Consensus 96 ~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK 133 (703)
...+++++.++..+.++|++-..=|.--.++|-||..+
T Consensus 137 ~~~~keqL~~~i~evq~lK~lkrkNakv~~~i~kkrqr 174 (175)
T PF13097_consen 137 YSNFKEQLIEMIKEVQELKNLKRKNAKVISDINKKRQR 174 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34678899999999999999999999999999998754
No 384
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=42.75 E-value=1.4e+02 Score=26.25 Aligned_cols=38 Identities=18% Similarity=0.214 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 49 KDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDA 86 (703)
Q Consensus 49 ~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (703)
.+....++.|+++|...|..+.+.+..+++.++..+..
T Consensus 20 ~~i~~~~~~~I~~i~~~~~~~~~~l~~~i~~l~~~l~~ 57 (149)
T PF07352_consen 20 ARIEAEANDEIARIKEWYEAEIAPLQNRIEYLEGLLQA 57 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666555444
No 385
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=42.50 E-value=3.5e+02 Score=27.66 Aligned_cols=35 Identities=23% Similarity=0.232 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 52 ARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDA 86 (703)
Q Consensus 52 ~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (703)
++.|..++.+=-.|+.+...|-+=|.++||+++.+
T Consensus 283 ye~Lke~~krdy~fi~etLQEERyR~erLEEqLNd 317 (455)
T KOG3850|consen 283 YERLKEQIKRDYKFIAETLQEERYRYERLEEQLND 317 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444445555555555555555555555555444
No 386
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=42.39 E-value=2.3e+02 Score=24.70 Aligned_cols=26 Identities=12% Similarity=0.043 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005307 98 ELQEAYRAVGHDLLRLLFFVEMNATG 123 (703)
Q Consensus 98 ~~~~~~~~~~~~l~~l~~~~~ln~~~ 123 (703)
.+.+.+.++..-.+..++...+|..|
T Consensus 103 ~i~~~~~~~~~~~~~~r~~a~~nl~a 128 (144)
T PF11657_consen 103 EIDNSLAEVNDLVREARKAAILNLVA 128 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777888888888876
No 387
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=42.35 E-value=3.5e+02 Score=28.02 Aligned_cols=92 Identities=16% Similarity=0.201 Sum_probs=42.2
Q ss_pred hccChhhHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHH
Q 005307 19 YYINYKLLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISE 98 (703)
Q Consensus 19 ~yi~Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (703)
.|++++.+++.++++.......+-.++ ..+ ...+..|+..++.=. ...+++.+..+.++.-.+-+.+..|.+..+.
T Consensus 21 ~~~~l~~~~~~~~~l~~~l~~p~~~~d--~~~-~~~l~ke~~~L~~iv-~~~~~l~~~~~e~~~~~ell~~e~D~el~~~ 96 (367)
T PRK00578 21 GVLDVDALKERLEELEAEAEDPDFWND--QER-AQKVTKELSSLKAKL-DTLEELRQRLDDLEELLELAEEEDDEETLAE 96 (367)
T ss_pred hhCCHHHHHHHHHHHHHHhcCCccccC--HHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 588999998888888755432211000 011 222333333332211 1122233333333322222222234444556
Q ss_pred HHHHHHHHHHHHHHHH
Q 005307 99 LQEAYRAVGHDLLRLL 114 (703)
Q Consensus 99 ~~~~~~~~~~~l~~l~ 114 (703)
+++.+.++..++..+.
T Consensus 97 a~~e~~~l~~~l~~le 112 (367)
T PRK00578 97 AEAELKALEKKLAALE 112 (367)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666777776666665
No 388
>PRK10263 DNA translocase FtsK; Provisional
Probab=41.57 E-value=1.8e+02 Score=35.36 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=10.1
Q ss_pred hhhhhhhHHHHHHhhhhhhhhh
Q 005307 558 LGLTVLPVNIIVGNYISNIFEE 579 (703)
Q Consensus 558 ~~~~~~~~~~~~~~~l~~r~g~ 579 (703)
.+.++.+|.++.. .+..-+|-
T Consensus 61 ~Nl~GiVGA~LAD-~L~~LFGl 81 (1355)
T PRK10263 61 HNLGGMPGAWLAD-TLFFIFGV 81 (1355)
T ss_pred ccccchHHHHHHH-HHHHHHhH
Confidence 3455555554433 44445554
No 389
>PF02787 CPSase_L_D3: Carbamoyl-phosphate synthetase large chain, oligomerisation domain; InterPro: IPR005480 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the oligomerisation domain found in the large subunit of carbamoyl phosphate synthases as well as in certain other carboxy phsophate domain-containing enzymes.; GO: 0006807 nitrogen compound metabolic process; PDB: 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A 1KEE_G 1CE8_A 1JDB_H ....
Probab=41.38 E-value=1.1e+02 Score=25.87 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 57 DQIEKIVLFLLEQQGALASRLSDLGEH 83 (703)
Q Consensus 57 ~e~~kv~~f~~~~~~~~~~~~~~~~~~ 83 (703)
.|+.||+-||.+|.+++.+--+.|++.
T Consensus 30 ~e~T~ID~wFL~~i~~Iv~~e~~L~~~ 56 (123)
T PF02787_consen 30 HELTKIDPWFLEQIKNIVDMEKELKEY 56 (123)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCccHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999998876666664
No 390
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=41.37 E-value=1.2e+02 Score=30.20 Aligned_cols=29 Identities=7% Similarity=0.001 Sum_probs=14.7
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHhhcCcc
Q 005307 324 VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR 354 (703)
Q Consensus 324 ~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~ 354 (703)
+++++..++. ++.|.+.+.-++.+++.++
T Consensus 11 ~~s~~~~l~~--~~~~l~~~~~~~~~F~~~m 39 (284)
T PF12805_consen 11 LASLLVGLLF--PYPWLLILVLALLTFFFGM 39 (284)
T ss_pred HHHHHHHHHh--hccHHHHHHHHHHHHHHHH
Confidence 4444444431 5555565555566555444
No 391
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=41.30 E-value=53 Score=38.07 Aligned_cols=27 Identities=0% Similarity=-0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYS 275 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (703)
....++++.++.-+|.+++..+...+.
T Consensus 369 i~fp~fFG~MfGD~GyGlll~l~~l~l 395 (759)
T PF01496_consen 369 ITFPFFFGMMFGDAGYGLLLLLFGLLL 395 (759)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 445566666667777887766655444
No 392
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=40.79 E-value=1.5e+02 Score=25.91 Aligned_cols=6 Identities=17% Similarity=0.412 Sum_probs=2.3
Q ss_pred hHHHHH
Q 005307 115 FFVEMN 120 (703)
Q Consensus 115 ~~~~ln 120 (703)
+|.++|
T Consensus 71 kwaRln 76 (175)
T KOG4253|consen 71 KWARLN 76 (175)
T ss_pred HHHHHH
Confidence 333333
No 393
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=40.75 E-value=1.9e+02 Score=34.05 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 005307 51 FARMLDDQIEKI 62 (703)
Q Consensus 51 f~~~l~~e~~kv 62 (703)
+-..+..|++++
T Consensus 388 ~~~~~~~~~~e~ 399 (1074)
T KOG0250|consen 388 TNNELGSELEER 399 (1074)
T ss_pred HHhhhhhhHHHH
Confidence 334444444444
No 394
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=40.73 E-value=2.2e+02 Score=30.63 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=17.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 005307 93 GSRISELQEAYRAVGHDLLRLL 114 (703)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~l~ 114 (703)
.-..+++++.+.+.|-|+.++.
T Consensus 274 ~i~~kklKkSLIDMYSEVLD~L 295 (980)
T KOG0447|consen 274 GIHHRKLKKSLIDMYSEVLDVL 295 (980)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999988753
No 395
>PRK15015 carbon starvation protein A; Provisional
Probab=40.48 E-value=5.7e+02 Score=28.67 Aligned_cols=100 Identities=17% Similarity=0.174 Sum_probs=51.4
Q ss_pred HHHHHHHHhhhhhhhccccCchhHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHhhcCcc-hhhhHH--hhccCChh
Q 005307 292 MAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLLVGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR-AVNRRY--ISDCVPLK 368 (703)
Q Consensus 292 ~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~-~~~~~~--i~~~~~~~ 368 (703)
..+...+|+.-+|.++-.-|-..--+ .+..++..++..+ -.++.-++.+=+.++=-.- +.+..+ =.|.+|.+
T Consensus 10 w~~~a~~ga~~~~~~al~rge~mnal--~lv~aa~~~y~ia---YrfYgr~ia~kv~~lD~~r~TPA~~~~DG~DYvPt~ 84 (701)
T PRK15015 10 WTVLSVMGAFALGYIALNRGEQINAL--WIVVASVCIYLIA---YRFYGLYIAKNVLAVDPTRMTPAVRHNDGLDYVPTD 84 (701)
T ss_pred HHHHHHHHHHHheeeeecCCCchhHH--HHHHHHHHHHHHH---HHHHHHHHHHHhccCCCCCCCCceECCCCCCcCcCC
Confidence 34455677777888877766542111 1111333333344 2233333444444444333 222222 24566654
Q ss_pred hhhhHHH-HHHHHHHHHHHHHHHhhhhhcccc
Q 005307 369 LRMRASA-GFVSASALGMACGPALACLFQTNF 399 (703)
Q Consensus 369 ~R~~~~~-~~~~~~~~G~~lgp~i~~~l~~g~ 399 (703)
+ -..+| =+.+..+.|+++||+++.. +||
T Consensus 85 k-~VLfGHHFasIAGAGPivGPvlAa~--~Gw 113 (701)
T PRK15015 85 K-KVLFGHHFAAIAGAGPLVGPVLAAQ--MGY 113 (701)
T ss_pred c-cchhHHHHHHHhccCccHHHHHHHH--Hcc
Confidence 4 45555 4455677888999988884 576
No 396
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=40.00 E-value=1.4e+02 Score=29.73 Aligned_cols=11 Identities=18% Similarity=0.546 Sum_probs=5.3
Q ss_pred cChhhHHHHHH
Q 005307 21 INYKLLKKKVN 31 (703)
Q Consensus 21 i~Y~~lK~~i~ 31 (703)
.||++|++..+
T Consensus 193 ~~y~~l~~~f~ 203 (284)
T PF12805_consen 193 YDYEELREQFK 203 (284)
T ss_pred ccHHHHHHHhc
Confidence 35555554444
No 397
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=39.82 E-value=1.6e+02 Score=23.24 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005307 66 LLEQQGALASRLSDLGEHHD 85 (703)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~ 85 (703)
|..|...+..|+..+...+.
T Consensus 62 y~~KL~~ikkrm~~l~~~l~ 81 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQ 81 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433
No 398
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=39.70 E-value=3.6e+02 Score=27.52 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------CCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 005307 59 IEKIVLFLLEQQGALASRLSDLGEHHDALSQ---------HQDGSRISELQEAYRAVGHDLLRLLFFVEMNATG 123 (703)
Q Consensus 59 ~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~ 123 (703)
.++|+.-..-++.++.++.+.+.++...... ..-..+..++.....++.+....|..|++++...
T Consensus 108 ~~~i~~~iL~~~~~l~~~~Ealsk~~~~~~k~~~kL~~kr~q~~~~q~~l~k~~k~l~e~~~~l~a~re~fL~~ 181 (377)
T KOG2896|consen 108 IECIQLKILVLESNLQRQIEALSKKRAHLEKTKQKLEDKRQQFNASQVKLQKQLKSLIELRNELVAKRELFLEQ 181 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHhH
Confidence 3444444444555666666555443222110 0001122334445555566666777777776554
No 399
>PLN02320 seryl-tRNA synthetase
Probab=39.61 E-value=4.6e+02 Score=28.47 Aligned_cols=26 Identities=15% Similarity=0.461 Sum_probs=18.4
Q ss_pred ccchhhhhccChhhHHHHHHhhhhhhh
Q 005307 12 QIQEWQGYYINYKLLKKKVNRYTQQIQ 38 (703)
Q Consensus 12 ~~~ew~~~yi~Y~~lK~~i~~~~~~~~ 38 (703)
..|.|+.- +|+|.+++....+.+...
T Consensus 59 ~~~~~~~m-lD~k~ir~n~~~v~~~l~ 84 (502)
T PLN02320 59 ARPQWKAA-IDFKWIRDNKEAVAINIR 84 (502)
T ss_pred cccccccc-cCHHHHHhCHHHHHHHHH
Confidence 45789865 999988877666655433
No 400
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=39.61 E-value=3.6e+02 Score=27.79 Aligned_cols=70 Identities=14% Similarity=0.169 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC------------chhHHHHHHHHHHHHHHHHHHHhH
Q 005307 49 KDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQD------------GSRISELQEAYRAVGHDLLRLLFF 116 (703)
Q Consensus 49 ~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~l~~l~~~ 116 (703)
.+.+..|+.|-+-+.+=.-.+.+++...-+.|.+++++-...+. .+.....+..+.-+..|+.+|++|
T Consensus 189 V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~ 268 (552)
T KOG2129|consen 189 VQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTY 268 (552)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666665554455555555555555555544211110 122334555556667788888777
Q ss_pred HH
Q 005307 117 VE 118 (703)
Q Consensus 117 ~~ 118 (703)
..
T Consensus 269 l~ 270 (552)
T KOG2129|consen 269 LS 270 (552)
T ss_pred HH
Confidence 53
No 401
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.52 E-value=85 Score=25.50 Aligned_cols=28 Identities=7% Similarity=-0.002 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhhhhhhcccc-CchhHHH
Q 005307 290 GSMAVAQVFSSVYFSAWSNRS-YLKPLVF 317 (703)
Q Consensus 290 s~~~l~~~i~~~~~G~l~Dr~-Grr~~l~ 317 (703)
+.-.++..+.....||+.|+| |-+|..+
T Consensus 49 ssefIsGilVGa~iG~llD~~agTsPwgl 77 (116)
T COG5336 49 SSEFISGILVGAGIGWLLDKFAGTSPWGL 77 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 344455555566778999984 4555433
No 402
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=39.33 E-value=1.5e+02 Score=26.45 Aligned_cols=40 Identities=18% Similarity=0.142 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 005307 47 VLKDFARMLDDQIEKIVLF-LLEQQGALASRLSDLGEHHDA 86 (703)
Q Consensus 47 ~~~~f~~~l~~e~~kv~~f-~~~~~~~~~~~~~~~~~~~~~ 86 (703)
...+++..|++.++++..= .+++.+|+.+|++.|.+.+..
T Consensus 43 ~i~~~~~~L~~v~~~~~~~~~kr~~~D~~KRL~iLfd~ln~ 83 (157)
T PF07304_consen 43 PIEEVLRELQRVLEACPPSIKKRVVDDIEKRLNILFDHLNN 83 (157)
T ss_dssp -HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcccccchhHHHHHHHHHHHHHHHHhc
Confidence 3466777888888877654 445568999999999998764
No 403
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.15 E-value=2.9e+02 Score=30.31 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 53 RMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDA 86 (703)
Q Consensus 53 ~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (703)
..+++.+=++|.=|.+..+++.+++.+++.++..
T Consensus 56 ~~iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~k 89 (655)
T KOG3758|consen 56 SDIESRLLKINEEFLKEFKEIKRRLDRVSEDVEK 89 (655)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555556666665555555544
No 404
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.14 E-value=5.1e+02 Score=27.66 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC--CchhHHHHHHHHHHHHHHHH---HHHhHHHH
Q 005307 68 EQQGALASRLSDLGEHHDALSQHQ--DGSRISELQEAYRAVGHDLL---RLLFFVEM 119 (703)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~---~l~~~~~l 119 (703)
.|+.||.+|+.++--+...++.+. -..+.+.|+..+..+..+++ +|+.++..
T Consensus 383 ~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~Lr~Kldtll~~ln~Pnq~k~Rl~~ 439 (508)
T KOG3091|consen 383 NRHVELSHRILRVMIKQEILRKRGYALTPDEEELRAKLDTLLAQLNAPNQLKARLDE 439 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 334444444444444433333321 12445566666666665554 45555443
No 405
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=39.14 E-value=3.8e+02 Score=26.15 Aligned_cols=18 Identities=17% Similarity=0.346 Sum_probs=12.4
Q ss_pred cChhhHHHHHHhhhhhhh
Q 005307 21 INYKLLKKKVNRYTQQIQ 38 (703)
Q Consensus 21 i~Y~~lK~~i~~~~~~~~ 38 (703)
|.-.+||..+|+-.....
T Consensus 68 V~iRHLkakLkes~~~l~ 85 (305)
T PF15290_consen 68 VCIRHLKAKLKESENRLH 85 (305)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566788888888665543
No 406
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=39.12 E-value=79 Score=26.53 Aligned_cols=37 Identities=16% Similarity=0.349 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005307 51 FARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDAL 87 (703)
Q Consensus 51 f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~ 87 (703)
|.+.+..=+++++.--.+...++..|+..|+.+++.+
T Consensus 79 ~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l 115 (118)
T TIGR01837 79 FDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEEL 115 (118)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444466677777777777776654
No 407
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=39.11 E-value=1.5e+02 Score=27.15 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=23.6
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 51 FARML---DDQIEKIVLFLLEQQGALASRLSDL 80 (703)
Q Consensus 51 f~~~l---~~e~~kv~~f~~~~~~~~~~~~~~~ 80 (703)
+-..| +.||.+.+.||+++...+.++-...
T Consensus 135 la~qLe~ke~el~~~d~fykeql~~le~k~~e~ 167 (187)
T PF05300_consen 135 LARQLEEKEAELKKQDAFYKEQLARLEEKNAEF 167 (187)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 6799999999999999888876554
No 408
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=38.90 E-value=3.3e+02 Score=25.44 Aligned_cols=21 Identities=24% Similarity=0.121 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 005307 375 AGFVSASALGMACGPALACLF 395 (703)
Q Consensus 375 ~~~~~~~~~G~~lgp~i~~~l 395 (703)
.......-++..+|.++++++
T Consensus 165 ~~~~~~~i~~f~~Ga~~ga~l 185 (209)
T PF06912_consen 165 ALRYLLIILSFFIGAILGALL 185 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666
No 409
>KOG2604 consensus Subunit of cis-Golgi transport vesicle tethering complex - Sec34p [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.87 E-value=4.4e+02 Score=29.41 Aligned_cols=119 Identities=15% Similarity=0.180 Sum_probs=62.8
Q ss_pred chhhhhhhccchhhhhccChhhHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 4 FGKKLKETQIQEWQGYYINYKLLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEH 83 (703)
Q Consensus 4 Fg~~l~~~~~~ew~~~yi~Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~ 83 (703)
|+.-+...+.|-|...|-+|..--..++...+..+..-++.++..+.+ . ++.|=-.|...|.+++.+..+.|..+
T Consensus 74 f~~wf~~~~~~~~~~~~~~y~~y~d~l~~~~~~c~~il~q~~~~~~~l-~----sl~~k~~~vs~kt~~l~eace~l~~e 148 (733)
T KOG2604|consen 74 FLSWFTDLMNPIKQISRPKYRIYLDQLKKRIEECDAILDQTNNALDTL-L----SLQKKFEFVSQKTSALHEACEQLLEE 148 (733)
T ss_pred hhHHHHhhhhHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 666677778888999988886544444443322222222222222222 2 23333456678888888777777665
Q ss_pred HHHhccCCCchhHHHHHHHHHHHHHHHHHH----Hh-HHHHHHHHHHHHHhhhhc
Q 005307 84 HDALSQHQDGSRISELQEAYRAVGHDLLRL----LF-FVEMNATGLRKILKKFDK 133 (703)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----~~-~~~ln~~~~~KilKK~dK 133 (703)
...+.+ -.+.+.+.+. ...+|..+ .+ =...|..+|+--|-|-|-
T Consensus 149 q~kl~e-----lae~I~k~L~-yF~~le~l~~~l~~pt~~v~~~sF~~~l~~ld~ 197 (733)
T KOG2604|consen 149 QSKLSE-----LAEGIRKKLH-YFAELEELNRRLNHPTLSVGKVSFKEMLAKLDE 197 (733)
T ss_pred HHHHHH-----HHHHHHHhhh-hHHHHHHHHHhhcCcchhhhhhhHHHHHHHHHH
Confidence 444322 1112222221 11222222 00 155678888888888884
No 410
>PRK01905 DNA-binding protein Fis; Provisional
Probab=38.56 E-value=1.3e+02 Score=22.84 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 005307 101 EAYRAVGHDLLRLLFFVEMNATGLRKILKKFD 132 (703)
Q Consensus 101 ~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~d 132 (703)
+.+.+.......-.+-..++...+++.+|||+
T Consensus 44 ~aL~~~~gn~s~aAr~LGIsrstL~rklkk~g 75 (77)
T PRK01905 44 VVMEQAGGNQSLAAEYLGINRNTLRKKLQQHG 75 (77)
T ss_pred HHHHHcCCCHHHHHHHHCCCHHHHHHHHHHhC
Confidence 44444444555666777789999999999986
No 411
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=38.31 E-value=2e+02 Score=28.66 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=34.8
Q ss_pred HHHHHHHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 341 LLIGRLFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 341 l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
.-..|.+.|+-.-. ...++.++-.+|.+++--..--...+.+++.++-|++|-.+
T Consensus 22 ~~~lr~~~g~~~vlf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~~l 77 (287)
T PF07760_consen 22 IPPLRVILGFPFVLFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGLLL 77 (287)
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777766544 66778888888855443333334455556666777777777
No 412
>KOG4094 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.20 E-value=2.6e+02 Score=24.04 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005307 62 IVLFLLEQQGALASRLSDLGEHH 84 (703)
Q Consensus 62 v~~f~~~~~~~~~~~~~~~~~~~ 84 (703)
+..||...+.++++++.....++
T Consensus 65 ~v~~y~deEs~Ler~lRl~R~E~ 87 (178)
T KOG4094|consen 65 IVLRYVDEESELERQLRLAREEL 87 (178)
T ss_pred HHHHhCCcccHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 413
>PRK14162 heat shock protein GrpE; Provisional
Probab=38.12 E-value=3.3e+02 Score=25.22 Aligned_cols=14 Identities=21% Similarity=0.401 Sum_probs=8.2
Q ss_pred HHHHHHHhhhhccc
Q 005307 122 TGLRKILKKFDKRF 135 (703)
Q Consensus 122 ~~~~KilKK~dK~~ 135 (703)
.|+.=|+|++.+..
T Consensus 120 ~Gvemi~k~l~~vL 133 (194)
T PRK14162 120 KGVQMTLDHLVKAL 133 (194)
T ss_pred HHHHHHHHHHHHHH
Confidence 46666666666554
No 414
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=37.79 E-value=53 Score=22.71 Aligned_cols=16 Identities=19% Similarity=0.335 Sum_probs=11.7
Q ss_pred cChhhHHHHHHhhhhh
Q 005307 21 INYKLLKKKVNRYTQQ 36 (703)
Q Consensus 21 i~Y~~lK~~i~~~~~~ 36 (703)
++++.+|+++|...-+
T Consensus 2 msf~Evk~lLk~~NI~ 17 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIE 17 (51)
T ss_dssp BEHHHHHHHHHHTT--
T ss_pred CCHHHHHHHHHHHccC
Confidence 5789999999987543
No 415
>PF04346 EutH: Ethanolamine utilisation protein, EutH; InterPro: IPR007441 EutH is a bacterial membrane protein whose molecular function is unknown. It has been suggested that it may act as an ethanolamine transporter, responsible for carrying ethanolamine from the periplasm to the cytoplasm [].; GO: 0006810 transport, 0016021 integral to membrane
Probab=37.72 E-value=4.6e+02 Score=26.78 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=61.3
Q ss_pred hhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH----HHHHHHHhhcccchhHHHHHHHHHHhhcCcc----
Q 005307 283 TLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL----VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR---- 354 (703)
Q Consensus 283 ~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~----~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~---- 354 (703)
...|.+..+..++..+ .++.+++....|--|.+..+.++. .-.+...++ +|......+-.+.|.-.|.
T Consensus 47 ~m~GI~~laP~la~~l-~~vi~Pl~~~~GaDPamfa~tiLA~DMGGY~LA~~la---~~~~~~~fsG~ilgsmlG~TIvF 122 (354)
T PF04346_consen 47 SMAGIMALAPVLAAFL-SPVIGPLFQAIGADPAMFAGTILANDMGGYQLAMELA---QDPEAGIFSGLILGSMLGATIVF 122 (354)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHhhhcCcCHHHHHHHc---CChhhHHHHHHHHHHhhcccEEe
Confidence 4556555555555544 567788899999999988875543 333445566 6776666666666666554
Q ss_pred --hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccc
Q 005307 355 --AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNF 399 (703)
Q Consensus 355 --~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~ 399 (703)
|++.+.+ -+++++-.+.|+.. .-+..-+|.++++.+ .+++
T Consensus 123 tIPVaLgii---~k~D~~y~a~Gil~--GiitIPiG~~vggl~~g~~~ 165 (354)
T PF04346_consen 123 TIPVALGII---EKEDHKYLAKGILA--GIITIPIGCFVGGLIAGFDI 165 (354)
T ss_pred ehhhhhhhc---ChhhhHHHHHHHHH--HHhhhCHHHHHHHHHHhCCH
Confidence 4443333 23344444444332 222333455556655 4444
No 416
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=37.66 E-value=1.5e+02 Score=31.39 Aligned_cols=125 Identities=20% Similarity=0.135 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccC-chhHHHHHHHHHH
Q 005307 246 HFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSY-LKPLVFSSIVLLV 324 (703)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~G-rr~~l~~~~~~~~ 324 (703)
.+....++.+-..+.+++..+..|.+ ....+|+++++...+.++-.+...+++++--....++| |-++++.+-+.++
T Consensus 14 ~~~~~~~lglQH~lamfg~~V~VPli--vg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi 91 (451)
T COG2233 14 PLGKLLLLGLQHLLAMFGATVLVPLL--VGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFV 91 (451)
T ss_pred ChHHHHHHHHHHHHHHHhcchHhhHH--hccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCeeEechHHHH
Confidence 34455666666666666665554432 23558999999999999999999999988766444454 5566665555555
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHhhcCcc-hhhhH-HhhccCChhhhhh
Q 005307 325 GNTLYAMAYDLNSIAVLLIGRLFCGLGSAR-AVNRR-YISDCVPLKLRMR 372 (703)
Q Consensus 325 ~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~-~~~~~-~i~~~~~~~~R~~ 372 (703)
+.++............++.+-+..|+..-. ..... .+...+||---|.
T Consensus 92 ~p~i~~~~~~g~~~~~~~G~ii~ag~~~~li~~~~~~~l~rlfPPvVtG~ 141 (451)
T COG2233 92 APMIAIGGTTGDGIAALLGGIIAAGLVYFLISPIVKIRLARLFPPVVTGP 141 (451)
T ss_pred HHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEe
Confidence 554444431112355555555555655444 33333 6666677654443
No 417
>PRK09546 zntB zinc transporter; Reviewed
Probab=37.53 E-value=4.5e+02 Score=26.64 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 005307 59 IEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKK 130 (703)
Q Consensus 59 ~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK 130 (703)
++.+.+=|....+++.++++++|+++.. . .+. . .+++.++.+++..|++...=|...+.++.+.
T Consensus 148 ld~ivd~~~~~l~~i~~~ld~lE~~l~~--~-~~~----~-~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~ 211 (324)
T PRK09546 148 CDALTDHASEFIEELHDKIIDLEDNLLD--Q-QIP----P-RGELALLRKQLIVMRRYMAPQRDVFARLASE 211 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-CCc----c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445566667777777777776643 1 111 1 2468888999999999999999999998863
No 418
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism]
Probab=37.14 E-value=21 Score=38.55 Aligned_cols=43 Identities=26% Similarity=0.178 Sum_probs=34.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhcccCCCC--chHHHHhhh
Q 005307 106 VGHDLLRLLFFVEMNATGLRKILKKFDKRFGYRF--TDYYVKTRA 148 (703)
Q Consensus 106 ~~~~l~~l~~~~~ln~~~~~KilKK~dK~~~~~~--~~~~~~~~~ 148 (703)
+...+...++|..+|++++-|+.||.||..+.+. +..|...+.
T Consensus 7 ~~~~l~~~~~~~~~~~~~ll~~p~~~~~~l~~~~e~~c~y~~~vm 51 (586)
T KOG1281|consen 7 IVNTLLQYRSLLVLNRTPLLLLPKKLDKLLHSSEEARCAYVILVM 51 (586)
T ss_pred HHHHHHHhhhhheeehhhhhhcchhhhhhcCCcHHHHHHHHHHHH
Confidence 3448999999999999999999999999997763 555655444
No 419
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=36.79 E-value=1.4e+02 Score=32.79 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=8.8
Q ss_pred HHHHHHHhHHHHHHHHH
Q 005307 108 HDLLRLLFFVEMNATGL 124 (703)
Q Consensus 108 ~~l~~l~~~~~ln~~~~ 124 (703)
.|+.+|++...+|-.|.
T Consensus 262 ~D~~~L~~~~~~~~~~~ 278 (555)
T TIGR03545 262 NDLKRLENKYAIKSGDL 278 (555)
T ss_pred hHHHHHHHHhCCCcccH
Confidence 34555555555555554
No 420
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=36.23 E-value=1.5e+02 Score=33.07 Aligned_cols=92 Identities=11% Similarity=0.145 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----C--C-chh-----HHHHHHHHHHHHHHHHHHHhHHH
Q 005307 51 FARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQH----Q--D-GSR-----ISELQEAYRAVGHDLLRLLFFVE 118 (703)
Q Consensus 51 f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~--~-~~~-----~~~~~~~~~~~~~~l~~l~~~~~ 118 (703)
.....+.|+++.+.+=.++.+|+..+... ++.++.+. . + ... .+.-.....+++.++..+.+++.
T Consensus 291 ~I~~ve~Ev~Rl~qlK~s~mKeli~k~r~---Eleel~~~~h~s~~~e~~~~f~~~~~ds~~~d~~ell~~~d~~i~k~k 367 (660)
T KOG4302|consen 291 IIEQVEKEVDRLEQLKASNMKELIEKKRS---ELEELWRLLHYSEENESRRRFITYLIDSGTEDVLELLENIDNLIKKYK 367 (660)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHHHHHHHhccccHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 45566789999999888888877765433 44433221 1 1 001 11122355677777888999999
Q ss_pred HHHHHHHHHHhhhhcccCCCCchHHHH
Q 005307 119 MNATGLRKILKKFDKRFGYRFTDYYVK 145 (703)
Q Consensus 119 ln~~~~~KilKK~dK~~~~~~~~~~~~ 145 (703)
=+...+.+|+++-|||......+.|+.
T Consensus 368 eea~srk~il~~ve~W~sa~EeE~~le 394 (660)
T KOG4302|consen 368 EEALSRKEILERVEKWESACEEESWLE 394 (660)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 999999999999999998877777765
No 421
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=36.00 E-value=1.4e+02 Score=20.29 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 48 LKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHH 84 (703)
Q Consensus 48 ~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~ 84 (703)
.-.|...-.+.+++.+ .|..++..|++.+|.++
T Consensus 14 lv~FQ~~v~~~lq~Lt----~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 14 LVAFQNKVTSALQSLT----QKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcc
Confidence 4678888888888876 47888999999988764
No 422
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=35.97 E-value=2e+02 Score=30.04 Aligned_cols=65 Identities=15% Similarity=0.272 Sum_probs=35.0
Q ss_pred ChhhHHHHHHhhhhhhhccchhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 22 NYKLLKKKVNRYTQQIQVGAENRLNVLKDFARMLD----DQIEKIVLFLLEQQGALASRLSDLGEHHDA 86 (703)
Q Consensus 22 ~Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~----~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (703)
.++.||..|-.+.+........+++.+.+|.+.-+ .+.-+|..-|..|-.+-...+.+|+++++.
T Consensus 5 ~~~~l~~Ki~~~~eqi~~e~~~rd~nv~eyLkl~~~aDk~Q~~rIkq~FekkNqksa~~i~~lqkkL~~ 73 (395)
T PF10267_consen 5 AIDHLQQKILKLKEQIKVEQTARDENVAEYLKLASNADKQQAARIKQVFEKKNQKSAQTIAQLQKKLEQ 73 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 46778887777766554444444444566666553 355555555555544444444444444433
No 423
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=35.95 E-value=1.5e+02 Score=26.32 Aligned_cols=65 Identities=12% Similarity=0.096 Sum_probs=31.8
Q ss_pred cChhhHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 21 INYKLLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHD 85 (703)
Q Consensus 21 i~Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~ 85 (703)
=|+..|+|.++.-+.=.--.+++.++....+.+.++-++++.-.=......++.+|.+.|+.+.+
T Consensus 28 ~D~pRL~kvL~t~R~FeLvpe~dl~~Aq~~l~~EI~P~I~~Ll~k~e~~l~kL~Rr~~tL~ak~E 92 (153)
T PF08287_consen 28 SDFPRLTKVLQTTRHFELVPEPDLQAAQQSLRDEIEPQINHLLDKAEKHLEKLQRREETLKAKCE 92 (153)
T ss_pred cccHHHHHHHcccCcccccCHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666776666533211112233334445555555555555544444445555555555555443
No 424
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=35.65 E-value=4.4e+02 Score=26.79 Aligned_cols=21 Identities=10% Similarity=0.193 Sum_probs=10.0
Q ss_pred CCchhHHHHHHHHHHHHHHHH
Q 005307 91 QDGSRISELQEAYRAVGHDLL 111 (703)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~ 111 (703)
.|......++..+.+...++.
T Consensus 206 ~D~~eL~~lr~eL~~~~~~i~ 226 (325)
T PF08317_consen 206 CDQEELEALRQELAEQKEEIE 226 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHH
Confidence 334444555555554444444
No 425
>PF09236 AHSP: Alpha-haemoglobin stabilising protein; InterPro: IPR015317 Alpha-haemoglobin stabilising protein (AHSP) acts a molecular chaperone for free alpha-haemoglobin, preventing the harmful aggregation of alpha-haemoglobin during normal erythroid cell development: it specifically protects free alpha-haemoglobin from precipitation. AHSP adopts a helical secondary structure consisting of an elongated antiparallel three alpha-helix bundle []. ; GO: 0030492 hemoglobin binding, 0006457 protein folding, 0020027 hemoglobin metabolic process, 0030097 hemopoiesis, 0050821 protein stabilization; PDB: 1Y01_A 1XZY_A 3OVU_A 1W0A_A 3IA3_C 1Z8U_A 1W0B_A 1W09_A.
Probab=35.55 E-value=86 Score=24.03 Aligned_cols=49 Identities=18% Similarity=0.423 Sum_probs=27.4
Q ss_pred cchhhhhccChhhHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 13 IQEWQGYYINYKLLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIVLFLLEQQGALA 74 (703)
Q Consensus 13 ~~ew~~~yi~Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~~ 74 (703)
+..|-..||+|=+ ++.+.+ +.. .++=.+.|..|++-+..=|..|...+.
T Consensus 37 V~DwvnfYINYy~-----~~~~Ge-----qqe---qdrAlqel~qeL~tla~pFL~Kyr~fL 85 (89)
T PF09236_consen 37 VNDWVNFYINYYK-----KQMTGE-----QQE---QDRALQELQQELNTLANPFLAKYRAFL 85 (89)
T ss_dssp HHHHHHHHHHHHH-----TT--SS-----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHhcCC-----hHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4579999999965 222211 111 133345566677777666666666554
No 426
>COG1345 FliD Flagellar capping protein [Cell motility and secretion]
Probab=35.55 E-value=1.7e+02 Score=31.49 Aligned_cols=15 Identities=27% Similarity=0.259 Sum_probs=11.7
Q ss_pred cChhhHHHHHHhhhh
Q 005307 21 INYKLLKKKVNRYTQ 35 (703)
Q Consensus 21 i~Y~~lK~~i~~~~~ 35 (703)
||+++||+.|++.+.
T Consensus 372 iDe~KL~~al~~~p~ 386 (483)
T COG1345 372 IDEAKLKAALNEDPD 386 (483)
T ss_pred ECHHHHHHHHHhChH
Confidence 788888888887653
No 427
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=35.20 E-value=60 Score=29.01 Aligned_cols=13 Identities=38% Similarity=0.731 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 005307 49 KDFARMLDDQIEK 61 (703)
Q Consensus 49 ~~f~~~l~~e~~k 61 (703)
++|...|+..+|+
T Consensus 3 eD~EsklN~AIER 15 (166)
T PF04880_consen 3 EDFESKLNQAIER 15 (166)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555444
No 428
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=35.14 E-value=5.3e+02 Score=26.68 Aligned_cols=20 Identities=5% Similarity=0.150 Sum_probs=15.2
Q ss_pred hccChhhHHHHHHhhhhhhh
Q 005307 19 YYINYKLLKKKVNRYTQQIQ 38 (703)
Q Consensus 19 ~yi~Y~~lK~~i~~~~~~~~ 38 (703)
.|+|++.+++.++++.....
T Consensus 21 ~~~~l~~~~~~~~~le~~~~ 40 (364)
T TIGR00020 21 GSLDPEKKKARLEELEKEME 40 (364)
T ss_pred hhCCHHHHHHHHHHHHHHhc
Confidence 48888888888888775543
No 429
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=35.13 E-value=5e+02 Score=26.37 Aligned_cols=67 Identities=13% Similarity=0.054 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 005307 60 EKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFDK 133 (703)
Q Consensus 60 ~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK 133 (703)
+.+.+-|..-.+++.++++.+|+++..-.. .+..+.+.++.+++..+++...-|...+.++.|...-
T Consensus 146 d~i~d~~~~~le~i~~~~~~ie~~l~~~~~-------~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~ 212 (322)
T COG0598 146 DAIVDNYFPVLEQIEDELEAIEDQLLASTT-------NEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLD 212 (322)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcCcc-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcc
Confidence 335566777788888888888888765222 1455778888999999999999999999888887763
No 430
>COG5570 Uncharacterized small protein [Function unknown]
Probab=34.75 E-value=1.5e+02 Score=20.34 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCC--CchhHHHHHHHHHHHHHHHHHHH
Q 005307 68 EQQGALASRLSDLGEHHDALSQHQ--DGSRISELQEAYRAVGHDLLRLL 114 (703)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~l~ 114 (703)
+...++..+...|+.++++--+.+ |......|++.-..+-.++..|+
T Consensus 5 shl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLk 53 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLK 53 (57)
T ss_pred HHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 456778888888888888754433 34556778877777777777775
No 431
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=34.42 E-value=69 Score=26.02 Aligned_cols=51 Identities=10% Similarity=0.191 Sum_probs=39.3
Q ss_pred chhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccc
Q 005307 548 TSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFH 599 (703)
Q Consensus 548 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~ 599 (703)
+...|-.++.++-+-++.+++.+ +.+|+..+-+.=.+|..++.+|..+++.
T Consensus 53 p~~fGRvYAAYGGvfI~~Sl~W~-w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 53 PAAFGRVYAAYGGVFIVASLLWG-WLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred cccchhHHHHhhhhHHHHHHHHH-hhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 35567888888888888999988 9999987777767777777777554443
No 432
>PLN02372 violaxanthin de-epoxidase
Probab=34.12 E-value=4.7e+02 Score=27.18 Aligned_cols=7 Identities=29% Similarity=0.553 Sum_probs=2.7
Q ss_pred HHHHHHh
Q 005307 26 LKKKVNR 32 (703)
Q Consensus 26 lK~~i~~ 32 (703)
|.+..|+
T Consensus 335 L~~Aa~k 341 (455)
T PLN02372 335 LEKAAKK 341 (455)
T ss_pred HHHHHHH
Confidence 3333333
No 433
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=34.01 E-value=2.7e+02 Score=25.86 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=10.3
Q ss_pred ChhhHHHHHHhhhhhh
Q 005307 22 NYKLLKKKVNRYTQQI 37 (703)
Q Consensus 22 ~Y~~lK~~i~~~~~~~ 37 (703)
.|+.+++.|.......
T Consensus 25 ~l~~l~~ai~~~~~~~ 40 (204)
T PF04740_consen 25 QLESLQKAINQFISSE 40 (204)
T ss_pred HHHHHHHHHHHHHcCc
Confidence 4677777777765443
No 434
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=34.01 E-value=4.6e+02 Score=25.64 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhccCCCchhHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 005307 57 DQIEKIVLFLLEQQ------GALASRLSDLGEHHDALSQHQDGSRISELQ---EAYRAVGHDLLRLLFFVEMNATGLRKI 127 (703)
Q Consensus 57 ~e~~kv~~f~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~l~~~~~ln~~~~~Ki 127 (703)
+|++|...|.-.-. --+..|+.+++..+..+..+.+.+....|. +.+.+=+.|.+.|+.-..==-..+.+|
T Consensus 137 ~E~~Ky~~fi~Dl~kv~~LLLsLs~RLaRve~aL~~~~~~~~~~Er~~L~~k~~~L~~Q~edAk~LKe~~drRe~~v~~i 216 (264)
T PF08687_consen 137 NEFEKYRMFIGDLEKVVNLLLSLSGRLARVENALSSLDEDADPEERESLLEKRRLLQRQLEDAKELKENLDRRERVVSEI 216 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45555555554332 256688888888888876555543433333 344555678888998888888889999
Q ss_pred Hhhhhc
Q 005307 128 LKKFDK 133 (703)
Q Consensus 128 lKK~dK 133 (703)
|-||--
T Consensus 217 L~~~L~ 222 (264)
T PF08687_consen 217 LARYLS 222 (264)
T ss_dssp HHHHS-
T ss_pred HHHhCC
Confidence 988863
No 435
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=34.00 E-value=92 Score=27.86 Aligned_cols=41 Identities=17% Similarity=0.129 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHh
Q 005307 66 LLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLF 115 (703)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 115 (703)
+..|++...||-.-||.++++ .+.|+...+++-+|+.+|+.
T Consensus 5 ~EsklN~AIERnalLE~ELdE---------KE~L~~~~QRLkDE~RDLKq 45 (166)
T PF04880_consen 5 FESKLNQAIERNALLESELDE---------KENLREEVQRLKDELRDLKQ 45 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---------HHHHHHCH------------
T ss_pred HHHHHHHHHHHhHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 345666667777777777755 24555666666666666664
No 436
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=34.00 E-value=2.1e+02 Score=30.57 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=13.8
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhccc
Q 005307 110 LLRLLFFVEMNATGLRKILKKFDKRF 135 (703)
Q Consensus 110 l~~l~~~~~ln~~~~~KilKK~dK~~ 135 (703)
|..++.|.+ .+++|+|||+..
T Consensus 305 LLelq~Yad-----~q~lL~kYdDi~ 325 (539)
T PF04184_consen 305 LLELQAYAD-----VQALLAKYDDIS 325 (539)
T ss_pred HHhcCCHHH-----HHHHHHHhcccc
Confidence 344555555 468899999643
No 437
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=33.85 E-value=4.7e+02 Score=28.71 Aligned_cols=23 Identities=13% Similarity=0.132 Sum_probs=11.2
Q ss_pred HhhhhhhhhHHHHHHhhhhhhhhh
Q 005307 556 ACLGLTVLPVNIIVGNYISNIFEE 579 (703)
Q Consensus 556 ~~~~~~~~~~~~~~~~~l~~r~g~ 579 (703)
....+.+.+++...+ ++-+.++.
T Consensus 304 ~~y~~~~~iaGy~S~-~~yk~~~g 326 (521)
T PF02990_consen 304 ILYALTSFIAGYVSA-RLYKSFGG 326 (521)
T ss_pred HHHHHHhhHHHHHHH-HHHHHcCC
Confidence 333444445554444 55555554
No 438
>PRK13676 hypothetical protein; Provisional
Probab=33.84 E-value=1.4e+02 Score=24.86 Aligned_cols=16 Identities=25% Similarity=0.140 Sum_probs=8.7
Q ss_pred hccChhhHHHHHHhhh
Q 005307 19 YYINYKLLKKKVNRYT 34 (703)
Q Consensus 19 ~yi~Y~~lK~~i~~~~ 34 (703)
.|-+|+.-|+.++...
T Consensus 21 ey~~~~~A~~~l~~d~ 36 (114)
T PRK13676 21 EYKALKEAKEAVKADE 36 (114)
T ss_pred HHHHHHHHHHHHHcCH
Confidence 3555666555555533
No 439
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=33.75 E-value=5.5e+02 Score=26.51 Aligned_cols=35 Identities=31% Similarity=0.399 Sum_probs=22.7
Q ss_pred hccCChhhhhhHHHH-HHHHHHHHHHHHHHhhhhhcccc
Q 005307 362 SDCVPLKLRMRASAG-FVSASALGMACGPALACLFQTNF 399 (703)
Q Consensus 362 ~~~~~~~~R~~~~~~-~~~~~~~G~~lgp~i~~~l~~g~ 399 (703)
.|.+|. +|-..++. +....+.|+++||.++. .|||
T Consensus 47 vDYvP~-~~~vlfghhf~sIAGaGPI~GPi~aa--~~Gw 82 (376)
T PF02554_consen 47 VDYVPT-NKWVLFGHHFASIAGAGPIVGPILAA--QFGW 82 (376)
T ss_pred CCCCCC-chHHhhHHHHHHHhccccchHHHHHH--Hhcc
Confidence 345554 45566664 34456788888888884 4577
No 440
>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]
Probab=33.59 E-value=3.9e+02 Score=24.70 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 52 ARMLDDQIEKIVLFLLEQQGALAS 75 (703)
Q Consensus 52 ~~~l~~e~~kv~~f~~~~~~~~~~ 75 (703)
-+....|-.||..+|..|+++..-
T Consensus 41 ~rlV~~q~~kI~~~yekKeKqve~ 64 (220)
T KOG1664|consen 41 GRLVQEQRLKIMQYYEKKEKQVEL 64 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999988886653
No 441
>PRK14157 heat shock protein GrpE; Provisional
Probab=33.41 E-value=2.8e+02 Score=26.34 Aligned_cols=18 Identities=6% Similarity=-0.090 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 005307 70 QGALASRLSDLGEHHDAL 87 (703)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~ 87 (703)
..++.+++.++..+.+.+
T Consensus 93 ~~e~kd~llR~~AEfeNy 110 (227)
T PRK14157 93 AAEYLEALQRERAEFINY 110 (227)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 442
>PF14782 BBS2_C: Ciliary BBSome complex subunit 2, C-terminal
Probab=33.19 E-value=4.3e+02 Score=28.10 Aligned_cols=85 Identities=14% Similarity=0.070 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhccCC---CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 005307 51 FARMLDDQIEKIVLFLLEQQ---GALASRLSDLGEHHDALSQHQ---DGSRISELQEAYRAVGHDLLRLLFFVEMNATGL 124 (703)
Q Consensus 51 f~~~l~~e~~kv~~f~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~ 124 (703)
-++.|..=+++|+.|..-+. .|+.++.+.++.-+-+..+.+ |-+..++-..++.++.+||..-.+=..-|+..+
T Consensus 305 ~~~el~~~l~~V~~~~~vr~~ltaemAd~~~~ik~llvrAEDaRl~~d~~~m~k~y~~l~~~n~~l~~~~~~R~~N~~~l 384 (431)
T PF14782_consen 305 EMEELREILEKVDELNEVRQRLTAEMADHSNLIKSLLVRAEDARLMGDMKNMRKYYAELYDLNRDLINEYKIRCNNHEEL 384 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 45677778888888876543 466666666655544422211 222333344455666677777777778888999
Q ss_pred HHHHhhhhccc
Q 005307 125 RKILKKFDKRF 135 (703)
Q Consensus 125 ~KilKK~dK~~ 135 (703)
.+-||+-.+..
T Consensus 385 ~~~lk~vn~~i 395 (431)
T PF14782_consen 385 LSSLKEVNQII 395 (431)
T ss_pred HHHHHHHHHHH
Confidence 99998887655
No 443
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=33.12 E-value=1.8e+02 Score=23.59 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHh
Q 005307 94 SRISELQEAYRAVGHDLLRLLF 115 (703)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~~l~~ 115 (703)
+.+..-+..+.-|+..|..+++
T Consensus 73 p~y~~~K~Rc~yL~~KL~HIK~ 94 (101)
T PF07303_consen 73 PNYQEKKKRCEYLHNKLSHIKQ 94 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666665553
No 444
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=33.03 E-value=2.3e+02 Score=26.69 Aligned_cols=18 Identities=28% Similarity=0.608 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 005307 46 NVLKDFARMLDDQIEKIV 63 (703)
Q Consensus 46 ~~~~~f~~~l~~e~~kv~ 63 (703)
....+|.+.|..|+++|+
T Consensus 93 k~~~dF~~~Lq~~Lk~V~ 110 (230)
T PF03904_consen 93 KVHNDFQDILQDELKDVD 110 (230)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 345889999999999995
No 445
>PF12018 DUF3508: Domain of unknown function (DUF3508); InterPro: IPR021897 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 280 amino acids in length. This domain has two conserved sequence motifs: GFC and GLL. This family is also known as UPF0704.
Probab=32.94 E-value=5e+02 Score=25.75 Aligned_cols=87 Identities=16% Similarity=0.165 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---chhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 005307 49 KDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQD---GSRISELQEAYRAVGHDLLRLLFFVEMNATGLR 125 (703)
Q Consensus 49 ~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~ 125 (703)
+-|.+.|.++++....-.....+++..+++.|++.++.-..-+. -+.+..|-+.-..+..|+..|..-..+ ..-+.
T Consensus 61 e~fLr~ll~dl~~~~~~V~~l~~~~~~~l~~L~~tv~~rtAVPt~~VyP~Fi~Ls~~W~~lqde~~ll~~l~~l-~~~L~ 139 (281)
T PF12018_consen 61 EIFLRILLSDLITCAQRVEELIKRFEAQLEKLKETVKSRTAVPTAQVYPLFIALSQLWSGLQDELNLLSVLNNL-LENLQ 139 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhcCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 56889999999999888888888888888888877655211111 234555555555555555544432221 23344
Q ss_pred HHHhhhhcccC
Q 005307 126 KILKKFDKRFG 136 (703)
Q Consensus 126 KilKK~dK~~~ 136 (703)
...|.+++...
T Consensus 140 ~~~~~~~~~~p 150 (281)
T PF12018_consen 140 PFSKSFTLSFP 150 (281)
T ss_pred HHHhhhhhhCC
Confidence 45555554444
No 446
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=32.82 E-value=20 Score=33.62 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=32.6
Q ss_pred HHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 005307 345 RLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 345 r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l 395 (703)
-.-+|+|+|. +++.+-+.+.+| +......++-..+..+..+.|-.++-++
T Consensus 178 AMasGvGSgSMMaAa~~aL~~~~P-~~a~~i~A~AaaSNllt~~~G~Y~~ifi 229 (241)
T PF11299_consen 178 AMASGVGSGSMMAAASGALAAAYP-EMADQILAFAAASNLLTSVTGLYMSIFI 229 (241)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHCc-chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788776 667777777776 5556666666666666666665555544
No 447
>PRK14155 heat shock protein GrpE; Provisional
Probab=32.66 E-value=3.8e+02 Score=25.16 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=9.5
Q ss_pred HHHHHHHhhhhccc
Q 005307 122 TGLRKILKKFDKRF 135 (703)
Q Consensus 122 ~~~~KilKK~dK~~ 135 (703)
.|+.-|.|++.+..
T Consensus 97 ~Gvemi~k~~~~~L 110 (208)
T PRK14155 97 IGVEMTEKELLGAF 110 (208)
T ss_pred HHHHHHHHHHHHHH
Confidence 57777777777665
No 448
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=32.52 E-value=8e+02 Score=28.95 Aligned_cols=69 Identities=16% Similarity=0.245 Sum_probs=27.9
Q ss_pred hccChhhHHHHHHhhhhhhhccchhhh-hHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Q 005307 19 YYINYKLLKKKVNRYTQQIQVGAENRL-NVLKDFARMLDDQIEKIVLFLL----EQQGALASRLSDLGEHHDAL 87 (703)
Q Consensus 19 ~yi~Y~~lK~~i~~~~~~~~~~~~~~~-~~~~~f~~~l~~e~~kv~~f~~----~~~~~~~~~~~~~~~~~~~~ 87 (703)
.||.|+.++...+.......-.+..++ ....+++...+.|++.++.=.. ++.++....+..|+++++..
T Consensus 233 ~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~ 306 (1174)
T KOG0933|consen 233 ICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSL 306 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHH
Confidence 355666555555443322211111111 1124445555555554443332 22233333444555555443
No 449
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=32.50 E-value=2.4e+02 Score=29.40 Aligned_cols=127 Identities=13% Similarity=0.058 Sum_probs=70.9
Q ss_pred HHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHH--HHH--HHHHHHHHHhhcc
Q 005307 259 LYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFS--SIV--LLVGNTLYAMAYD 334 (703)
Q Consensus 259 ~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~--~~~--~~~~~~~~~~a~~ 334 (703)
..=+++...-...+.-.-|.|++....+++.-...-..++++...|.++. |.||+... ++- +..+..-.++.+.
T Consensus 276 t~K~gf~a~da~t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta--~~~pl~~~lka~~~R~~~~~~~t~Lv~~ 353 (510)
T KOG3574|consen 276 TGKLGFQAADALTSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTA--GPRPLNVFLKAVPYRLGGGLVQTALVWW 353 (510)
T ss_pred HHHHHhhhhhhccchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecC--CCCcchHHHHhhhHHHHHHHHHHHHHhh
Confidence 33445555555566677889999999888774444444555555555544 23333221 111 0011111111111
Q ss_pred cc-----------hhHHH-HHHHHHHhhc-Ccc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHH
Q 005307 335 LN-----------SIAVL-LIGRLFCGLG-SAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMAC 387 (703)
Q Consensus 335 ~~-----------~~~~l-~i~r~l~Gi~-~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~l 387 (703)
.+ .+..+ +....+.+.. ... ...++..+.+.+|.--|..|.+.+...++|...
T Consensus 354 ~~~~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~w 420 (510)
T KOG3574|consen 354 TPTLGHSDGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNW 420 (510)
T ss_pred hcccccCCCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCc
Confidence 01 22222 2234444433 333 778888999999999999999999988888643
No 450
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.22 E-value=4.2e+02 Score=24.69 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 56 DDQIEKIVLFLLEQQGALASRLSD 79 (703)
Q Consensus 56 ~~e~~kv~~f~~~~~~~~~~~~~~ 79 (703)
+.|+++.+.|...-.+++..-++.
T Consensus 8 E~ele~~~~~IkkliK~~~~li~a 31 (207)
T cd07633 8 EQELERTNKFIKDVIKDGNALISA 31 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655554444
No 451
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=32.21 E-value=1.9e+02 Score=31.35 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 49 KDFARMLDDQIEKIVLFLLEQQGALASRL 77 (703)
Q Consensus 49 ~~f~~~l~~e~~kv~~f~~~~~~~~~~~~ 77 (703)
.++++..++-++...+=+.....|..+++
T Consensus 445 ~~l~~~~~~n~~~a~~~l~~~D~~~ar~l 473 (533)
T COG1283 445 DALFALTLENLRLAISVLVTGDLELARRL 473 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444455445444444444433333333
No 452
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=32.16 E-value=3.4e+02 Score=24.13 Aligned_cols=18 Identities=11% Similarity=0.170 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 005307 97 SELQEAYRAVGHDLLRLL 114 (703)
Q Consensus 97 ~~~~~~~~~~~~~l~~l~ 114 (703)
..+++.+.++.++|..++
T Consensus 138 ~~i~e~IKd~de~L~~I~ 155 (163)
T PF03233_consen 138 KLIEELIKDFDERLKEIR 155 (163)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455555554443
No 453
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=32.16 E-value=3.7e+02 Score=29.24 Aligned_cols=13 Identities=23% Similarity=0.365 Sum_probs=9.8
Q ss_pred hhHHHHHHhhhhh
Q 005307 24 KLLKKKVNRYTQQ 36 (703)
Q Consensus 24 ~~lK~~i~~~~~~ 36 (703)
..|||.||++++-
T Consensus 45 ~DLKkEIKKLQRl 57 (575)
T KOG2150|consen 45 SDLKKEIKKLQRL 57 (575)
T ss_pred HHHHHHHHHHHHH
Confidence 3688888888763
No 454
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=31.98 E-value=2.5e+02 Score=21.94 Aligned_cols=46 Identities=24% Similarity=0.403 Sum_probs=21.5
Q ss_pred cChhhHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 005307 21 INYKLLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEK---IVLFLLEQQGALASRLSDLGE 82 (703)
Q Consensus 21 i~Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~k---v~~f~~~~~~~~~~~~~~~~~ 82 (703)
|||..||. +|+...+ . +.|..++++ -...|.++..++.+|.+.|-.
T Consensus 1 ~~~~~lk~-mkeLEqE------------k---d~LLqgLe~~Er~r~Wy~~qL~~vq~rq~~Lg~ 49 (84)
T PF11414_consen 1 VDYNMLKR-MKELEQE------------K---DVLLQGLEMEERERDWYQQQLQSVQERQRHLGR 49 (84)
T ss_dssp ------HH-HHHHHHH------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---
T ss_pred CHhhHHHH-HHHHHHH------------H---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 57777764 4554422 1 334455544 456777777777777766544
No 455
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=31.96 E-value=1.7e+02 Score=25.20 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=19.0
Q ss_pred hhccCChhhhhhHHHHHHHHHHHHH
Q 005307 361 ISDCVPLKLRMRASAGFVSASALGM 385 (703)
Q Consensus 361 i~~~~~~~~R~~~~~~~~~~~~~G~ 385 (703)
+.|++|+..|..+.+.++.......
T Consensus 60 Lkdi~P~~~R~~i~~~~~~~~~~~k 84 (137)
T PF04281_consen 60 LKDIFPPSVRNWISSTVSTTSSAVK 84 (137)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHH
Confidence 5799999999988887765544443
No 456
>PRK11469 hypothetical protein; Provisional
Probab=31.94 E-value=2.5e+02 Score=25.93 Aligned_cols=76 Identities=16% Similarity=0.075 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhh-hhhhhccccCchhHHHHHHHHH
Q 005307 245 YHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSV-YFSAWSNRSYLKPLVFSSIVLL 323 (703)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~-~~G~l~Dr~Grr~~l~~~~~~~ 323 (703)
..++....+.++.-++.++.++.... .|.+......+..+..+....... ++.++.+++|||.-++.++++.
T Consensus 103 ~~~~~~l~LaiAtSiDAlavGi~~~~-------~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~~g~~a~~lgG~iLI 175 (188)
T PRK11469 103 HGFWLLVTTAIATSLDAMAVGVGLAF-------LQVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAEILGGLVLI 175 (188)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777776665433 233444444444444444443343 4444566788887777776654
Q ss_pred -HHHH
Q 005307 324 -VGNT 327 (703)
Q Consensus 324 -~~~~ 327 (703)
+|.-
T Consensus 176 ~iGi~ 180 (188)
T PRK11469 176 GIGVQ 180 (188)
T ss_pred HHHHH
Confidence 5543
No 457
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=31.59 E-value=3.1e+02 Score=27.43 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 005307 96 ISELQEAYRAVGHDLLRLLF 115 (703)
Q Consensus 96 ~~~~~~~~~~~~~~l~~l~~ 115 (703)
.+.+|+.+..+..++..|+.
T Consensus 142 lEr~K~~~d~L~~e~~~Lre 161 (302)
T PF09738_consen 142 LERQKRAHDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555543
No 458
>PTZ00332 paraflagellar rod protein; Provisional
Probab=31.56 E-value=6.7e+02 Score=26.77 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=13.5
Q ss_pred HHHhHHHHHHHHHHHHHhhhhccc
Q 005307 112 RLLFFVEMNATGLRKILKKFDKRF 135 (703)
Q Consensus 112 ~l~~~~~ln~~~~~KilKK~dK~~ 135 (703)
.+.+|+ ..|..-|--||||.-
T Consensus 391 ~lee~V---~egc~~i~~r~DK~~ 411 (589)
T PTZ00332 391 LVEELV---SEGCAAVKARHDKTN 411 (589)
T ss_pred HHHHHH---HHHHHHHHHHHhhhH
Confidence 344554 356666777889876
No 459
>PRK00430 fis global DNA-binding transcriptional dual regulator Fis; Provisional
Probab=31.30 E-value=71 Score=25.59 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 005307 101 EAYRAVGHDLLRLLFFVEMNATGLRKILKKFD 132 (703)
Q Consensus 101 ~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~d 132 (703)
+.+.+.......-.+..-+|+..++|-+|||+
T Consensus 62 ~aL~~~~gn~s~AAr~LGIsRsTL~rKLkr~g 93 (95)
T PRK00430 62 MVMQYTRGNQTRAALMLGINRGTLRKKLKKYG 93 (95)
T ss_pred HHHHHcCCCHHHHHHHhCCCHHHHHHHHHHhC
Confidence 44444444555666777789999999999985
No 460
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=31.24 E-value=2.8e+02 Score=31.49 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchh
Q 005307 49 KDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSR 95 (703)
Q Consensus 49 ~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (703)
++|...-..=+.....+...+.+.+.++.+.|+++++.++.+...++
T Consensus 223 ~~F~~ra~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELiedR 269 (683)
T PF08580_consen 223 EEFQSRAESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIEDR 269 (683)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44554444444444555556666677777777777776655443333
No 461
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.19 E-value=3.7e+02 Score=25.18 Aligned_cols=33 Identities=12% Similarity=0.173 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 51 FARMLDDQIEKIVLFLLEQQGALASRLSDLGEH 83 (703)
Q Consensus 51 f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~ 83 (703)
=...++.|++++..=..+..++..++...++.+
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~ 126 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQK 126 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345566666666533333333333333333333
No 462
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.06 E-value=3.8e+02 Score=31.13 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhhhc
Q 005307 119 MNATGLRKILKKFDK 133 (703)
Q Consensus 119 ln~~~~~KilKK~dK 133 (703)
.+....+++.|+.++
T Consensus 593 ~~~~~~~~~~~~~~~ 607 (771)
T TIGR01069 593 IHKAKEIKSIEDLVK 607 (771)
T ss_pred ccHHHHHHHHHHHHH
Confidence 455555555555544
No 463
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=30.87 E-value=6.4e+02 Score=26.34 Aligned_cols=74 Identities=16% Similarity=0.063 Sum_probs=44.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHH
Q 005307 512 TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLAS 586 (703)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~ 586 (703)
++..+.+.+.++....+.=.......+|+....|-+-..++..-.+-+...++.+.++| -..|+..|.+.+...
T Consensus 26 s~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivG-q~vDg~sr~Kvi~~~ 99 (503)
T KOG2601|consen 26 SSTVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVG-QWVDGMSRVKVIQTW 99 (503)
T ss_pred cceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHH-HHhcchhHHHHHHHH
Confidence 33444555566665555544444556666666554444455544555556666777778 667888888876543
No 464
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=30.64 E-value=2.7e+02 Score=26.32 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=39.9
Q ss_pred ccChhhHHHHHHhhhhhhhcc---c------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 20 YINYKLLKKKVNRYTQQIQVG---A------ENRLNVLKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDA 86 (703)
Q Consensus 20 yi~Y~~lK~~i~~~~~~~~~~---~------~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (703)
..||+.||..|.........- . -..+...+...+.|+.+-..|..=++.=.+++..++..+...+..
T Consensus 14 ~~n~e~lk~~v~~~~~~Y~~~vvTee~ik~aKk~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~ 89 (215)
T PF07083_consen 14 IFNFEELKAEVDEAVEKYKGYVVTEENIKDAKKDRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAPIDE 89 (215)
T ss_pred cCCHHHHHHHHHHHHHHhCCcccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 368999999999987654321 0 011222455666666666666555555556666666666555554
No 465
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=30.42 E-value=4e+02 Score=24.00 Aligned_cols=11 Identities=9% Similarity=0.069 Sum_probs=7.1
Q ss_pred cccHHHHHHhh
Q 005307 501 VTSIMSAYRLL 511 (703)
Q Consensus 501 ~~~~~~~~~~~ 511 (703)
.-+|.++++++
T Consensus 24 ~L~W~~ffkLR 34 (173)
T PF08566_consen 24 QLTWNEFFKLR 34 (173)
T ss_pred CCCHHHHHHHH
Confidence 34677777765
No 466
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=30.39 E-value=2.9e+02 Score=22.26 Aligned_cols=22 Identities=5% Similarity=-0.153 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 005307 63 VLFLLEQQGALASRLSDLGEHH 84 (703)
Q Consensus 63 ~~f~~~~~~~~~~~~~~~~~~~ 84 (703)
|.=-..|..++.+....++..+
T Consensus 30 N~~~~~kY~~~~~~~~~l~~~~ 51 (99)
T PF10046_consen 30 NKATSLKYKKMKDIAAGLEKNL 51 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444443333
No 467
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=30.35 E-value=3.2e+02 Score=25.58 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=13.8
Q ss_pred hccchhhhhccChhhHHHHHHhhh
Q 005307 11 TQIQEWQGYYINYKLLKKKVNRYT 34 (703)
Q Consensus 11 ~~~~ew~~~yi~Y~~lK~~i~~~~ 34 (703)
..+.+++...-+++.+|+.+|+..
T Consensus 118 ~vi~pl~~~~~~~~~i~~~~kkr~ 141 (229)
T PF03114_consen 118 TVIDPLKEFLKEFKEIKKLIKKRE 141 (229)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334555555556666666666644
No 468
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=30.18 E-value=4.7e+02 Score=24.54 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 56 DDQIEKIVLFLLEQQGALASRLSDLGE 82 (703)
Q Consensus 56 ~~e~~kv~~f~~~~~~~~~~~~~~~~~ 82 (703)
+.||++-|.|...-.+++..-++.++.
T Consensus 8 e~~l~~t~~~ik~liK~c~~li~A~k~ 34 (207)
T cd07634 8 EIELERTNKFIKELIKDGSLLIGALRN 34 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777666666666555554443
No 469
>PHA03332 membrane glycoprotein; Provisional
Probab=30.16 E-value=4.2e+02 Score=31.20 Aligned_cols=41 Identities=12% Similarity=0.223 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 005307 49 KDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQ 89 (703)
Q Consensus 49 ~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~ 89 (703)
..--..|++.++.||.=....++|+..|+.....+++.+.+
T Consensus 922 ~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~ 962 (1328)
T PHA03332 922 AKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLAT 962 (1328)
T ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556777777778877777777887777777777776644
No 470
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=29.79 E-value=1.6e+02 Score=26.28 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=15.8
Q ss_pred hhccChhhHHHHHHhhhhhhhcc
Q 005307 18 GYYINYKLLKKKVNRYTQQIQVG 40 (703)
Q Consensus 18 ~~yi~Y~~lK~~i~~~~~~~~~~ 40 (703)
...=++++||+.|++..++...-
T Consensus 37 ~~~~~~~~l~~Ei~~l~~E~~~i 59 (161)
T PF04420_consen 37 KSSKEQRQLRKEILQLKRELNAI 59 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cccHHHHHHHHHHHHHHHHHHcC
Confidence 44556788888888887665543
No 471
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=29.76 E-value=2.2e+02 Score=23.09 Aligned_cols=22 Identities=14% Similarity=-0.031 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh
Q 005307 374 SAGFVSASALGMACGPALACLF 395 (703)
Q Consensus 374 ~~~~~~~~~~G~~lgp~i~~~l 395 (703)
+|.+.....+..++|..+|-|+
T Consensus 45 ~g~IG~~~v~pil~G~~lG~WL 66 (100)
T TIGR02230 45 FGLIGWSVAIPTLLGVAVGIWL 66 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666667777777
No 472
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.74 E-value=4.7e+02 Score=24.41 Aligned_cols=20 Identities=10% Similarity=0.160 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 005307 52 ARMLDDQIEKIVLFLLEQQG 71 (703)
Q Consensus 52 ~~~l~~e~~kv~~f~~~~~~ 71 (703)
...|+.+++|++.+.+.-.+
T Consensus 11 ~~~le~~l~kl~K~~~~~~d 30 (200)
T cd07637 11 VVEIEAKLDKLVKLCSGMIE 30 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677788888777765543
No 473
>COG3162 Predicted membrane protein [Function unknown]
Probab=29.38 E-value=3e+02 Score=22.09 Aligned_cols=56 Identities=7% Similarity=0.042 Sum_probs=36.3
Q ss_pred ccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHh
Q 005307 502 TSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLAC 557 (703)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~ 557 (703)
..++++.+.+++-.+.+.++++..++++.....+.|.++.....-.....|+.+++
T Consensus 13 p~f~eLv~kr~~Fa~~ltl~flv~Y~~filLiaf~~~~l~tp~~~~~Vt~Gip~gv 68 (102)
T COG3162 13 PRFRELVRKRRRFAVPLTLIFLVVYFGFILLIAFAPGWLATPLFGASVTRGIPFGV 68 (102)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCcccCCceehhHhHHH
Confidence 35777776556666777788888888888887777766654432223445655544
No 474
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=29.27 E-value=42 Score=33.69 Aligned_cols=75 Identities=17% Similarity=0.228 Sum_probs=53.1
Q ss_pred ccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHH-HH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc
Q 005307 280 AAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIV-LL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR 354 (703)
Q Consensus 280 ~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~-~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~ 354 (703)
+.-..+|....++.++.++.+.+.|.++.++||-+.+..+.+ -. .-...+...+...+.+.+++.-.+.|+|.+.
T Consensus 307 ~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~v~gavv~l~li~~~~~w~~~~~~~~i~y~~aalwgv~d~v 383 (390)
T KOG3097|consen 307 LGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLLVLGAVVHLLLITILFFWAPNPQDSWIFYVAAALWGVGDAV 383 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHhcccCCCCceEEEeehhhcCccHHH
Confidence 345678999999999999999999999999999999888754 22 3334443332224556666666666666543
No 475
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=29.24 E-value=4.8e+02 Score=24.45 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=16.0
Q ss_pred HHHhHHHHHHHHHHHHHhhhhccc
Q 005307 112 RLLFFVEMNATGLRKILKKFDKRF 135 (703)
Q Consensus 112 ~l~~~~~ln~~~~~KilKK~dK~~ 135 (703)
.|.+|+.-....++--=|||||.+
T Consensus 97 pL~~F~k~dl~~~ke~kk~FdK~s 120 (207)
T cd07602 97 PLEKFRKEQIGGAKEEKKKFDKET 120 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666666677788765
No 476
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=29.18 E-value=3.5e+02 Score=27.39 Aligned_cols=7 Identities=43% Similarity=0.672 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 005307 77 LSDLGEH 83 (703)
Q Consensus 77 ~~~~~~~ 83 (703)
++.++.+
T Consensus 80 l~~le~e 86 (314)
T PF04111_consen 80 LEELEEE 86 (314)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 477
>PF10398 DUF2443: Protein of unknown function (DUF2443); InterPro: IPR019469 This entry represents a small group of highly conserved proteins from bacteria, in particular Helicobacter species. The structure is a bundle of alpha helices. The function is not known. ; PDB: 1ZKE_F.
Probab=28.95 E-value=2.2e+02 Score=21.26 Aligned_cols=15 Identities=27% Similarity=0.536 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHH
Q 005307 48 LKDFARMLDDQIEKI 62 (703)
Q Consensus 48 ~~~f~~~l~~e~~kv 62 (703)
...|+..++.|++|.
T Consensus 48 ~~~~~~QideeV~~L 62 (79)
T PF10398_consen 48 NMAFLAQIDEEVEKL 62 (79)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 356888888887764
No 478
>PRK14163 heat shock protein GrpE; Provisional
Probab=28.90 E-value=4e+02 Score=25.08 Aligned_cols=79 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHH------HHHHH
Q 005307 53 RMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNA------TGLRK 126 (703)
Q Consensus 53 ~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~------~~~~K 126 (703)
..|..++++ -..+..++.+++.++..+.+.++++...+..+..+.+...+..+|.....-.+.=. .|+.=
T Consensus 43 ~~l~~~l~~----l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~a~~~~~~~LLpVlDnLerAl~~~~l~~Gv~m 118 (214)
T PRK14163 43 AGLTAQLDQ----VRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEIAVANLLSELLPVLDDVGRAREHGELVGGFKS 118 (214)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHHhchhHHHHHHH
Q ss_pred HHhhhhccc
Q 005307 127 ILKKFDKRF 135 (703)
Q Consensus 127 ilKK~dK~~ 135 (703)
|.|++.+..
T Consensus 119 i~k~l~~~L 127 (214)
T PRK14163 119 VAESLETTV 127 (214)
T ss_pred HHHHHHHHH
No 479
>PRK14139 heat shock protein GrpE; Provisional
Probab=28.90 E-value=4.6e+02 Score=24.08 Aligned_cols=23 Identities=26% Similarity=0.130 Sum_probs=13.3
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhh
Q 005307 110 LLRLLFFVEMNATGLRKILKKFD 132 (703)
Q Consensus 110 l~~l~~~~~ln~~~~~KilKK~d 132 (703)
+..+..=+++-+.-|.|+|+||.
T Consensus 106 ~~~l~~Gv~mi~k~l~~vL~k~G 128 (185)
T PRK14139 106 LEKLREGVELTLKQLTSAFEKGR 128 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC
Confidence 33444445566666666666664
No 480
>KOG4844 consensus Mitochondrial ribosomal protein S27 [Translation, ribosomal structure and biogenesis]
Probab=28.86 E-value=18 Score=27.85 Aligned_cols=28 Identities=18% Similarity=0.129 Sum_probs=22.3
Q ss_pred hhhhhccchhhhhccChhhHHHHHHhhh
Q 005307 7 KLKETQIQEWQGYYINYKLLKKKVNRYT 34 (703)
Q Consensus 7 ~l~~~~~~ew~~~yi~Y~~lK~~i~~~~ 34 (703)
.|.-..+.+|...|+.|++|+.++.+.+
T Consensus 38 ~LkG~kvasyYp~~~~~r~l~tll~d~e 65 (102)
T KOG4844|consen 38 KLKGDKVASYYPPYDIKRELPTLLADEE 65 (102)
T ss_pred HhccchHhhhcchHHhhhhhhhhhcccc
Confidence 3444567899999999999999987754
No 481
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=28.83 E-value=5.8e+02 Score=25.24 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 005307 104 RAVGHDLLRLLFFVEMNATGLRKILKKFD 132 (703)
Q Consensus 104 ~~~~~~l~~l~~~~~ln~~~~~KilKK~d 132 (703)
.++.+|+.+|+.-+ -.|++||+|.-
T Consensus 215 ~DI~EEldRL~sHv----~~~~~iL~~~g 239 (290)
T COG1561 215 ADIAEELDRLKSHV----KEFRNILEKGG 239 (290)
T ss_pred hhHHHHHHHHHHHH----HHHHHHHhcCC
Confidence 56778888888765 47899996654
No 482
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=28.75 E-value=1.7e+02 Score=19.00 Aligned_cols=9 Identities=22% Similarity=0.527 Sum_probs=4.2
Q ss_pred ChhhHHHHH
Q 005307 22 NYKLLKKKV 30 (703)
Q Consensus 22 ~Y~~lK~~i 30 (703)
|++.+|..|
T Consensus 4 dle~~KqEI 12 (40)
T PF08776_consen 4 DLERLKQEI 12 (40)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 445555443
No 483
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.60 E-value=2.8e+02 Score=22.71 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=18.1
Q ss_pred hhhhhhHHHHHHHH-HHHHHHHHHHhhhhh
Q 005307 367 LKLRMRASAGFVSA-SALGMACGPALACLF 395 (703)
Q Consensus 367 ~~~R~~~~~~~~~~-~~~G~~lgp~i~~~l 395 (703)
++.++.+.++--+. +..|.++|..+|.++
T Consensus 37 ~s~k~~~~a~klssefIsGilVGa~iG~ll 66 (116)
T COG5336 37 ESIKGYAQAFKLSSEFISGILVGAGIGWLL 66 (116)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666654444 445667777777777
No 484
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=28.40 E-value=4.4e+02 Score=28.43 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 005307 99 LQEAYRAVGHDLLRLL 114 (703)
Q Consensus 99 ~~~~~~~~~~~l~~l~ 114 (703)
+.+.+..-.+++..||
T Consensus 499 mNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 499 MNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333333334444443
No 485
>PF10374 EST1: Telomerase activating protein Est1; InterPro: IPR019458 Est1 is directly involved in telomere replication. It associates with telomerase and, during its interaction with CDC13, telomerase activity is promoted [, ]. ; PDB: 1YA0_B.
Probab=28.32 E-value=1.1e+02 Score=26.11 Aligned_cols=98 Identities=13% Similarity=0.010 Sum_probs=45.2
Q ss_pred hh-hhccChhhHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h
Q 005307 16 WQ-GYYINYKLLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDA-------L 87 (703)
Q Consensus 16 w~-~~yi~Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~-------~ 87 (703)
|+ -+|=--+.+|+.+++. .......+.++....|.+- ++....||..-..++.++..--+..... .
T Consensus 10 W~~~~y~ii~~fr~~~~~~--~~~~~~~~~rk~~~~~~~f----l~~~~~FY~~li~~l~~~y~l~~~~~~~~~~~~~~~ 83 (131)
T PF10374_consen 10 WKKVHYPIIKWFRKWIRRK--KSKKKPVEFRKLKSKLRKF----LKSAIGFYQSLIQRLQSKYDLSLLIPIDIFLSLLPL 83 (131)
T ss_dssp HHHHTHHHHHHHHH----H--CT-TT-TTCCHHHHHHHHH----HHHHHHHHHHHHHHHCHHTT----------------
T ss_pred HHHHHHHHHHHHHHHhhhc--ccCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCccchhhhhhhhcch
Confidence 66 4555555566666551 1111111222233444444 4447789988888888776521111110 0
Q ss_pred -----------ccCCCchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 005307 88 -----------SQHQDGSRISELQEAYRAVGHDLLRLLFFVEM 119 (703)
Q Consensus 88 -----------~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~l 119 (703)
....+.+....+...+..+..-|-+|.+|.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~hrcLi~LGDL~RY~~~ 126 (131)
T PF10374_consen 84 FTKSSSDSSSYIPDSSSELRSWALYSCHRCLIYLGDLARYREQ 126 (131)
T ss_dssp -------------------SCHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hcccccccccccCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 00011122234566778888889999999765
No 486
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=28.28 E-value=1.6e+02 Score=27.00 Aligned_cols=40 Identities=10% Similarity=0.236 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhhhhhhccccCc-hhHHHHHHHHHHHHHH
Q 005307 289 IGSMAVAQVFSSVYFSAWSNRSYL-KPLVFSSIVLLVGNTL 328 (703)
Q Consensus 289 ~s~~~l~~~i~~~~~G~l~Dr~Gr-r~~l~~~~~~~~~~~~ 328 (703)
+.-|.++..+.+.+.|+++||..+ ++.....+.+.++.+.
T Consensus 88 TgGyL~gfi~aa~l~G~l~~k~~~~~~~~~~~~~~l~G~~~ 128 (184)
T COG1268 88 TGGYLIGFIIAAFLIGLLAEKIRKRNGFILLFLALLAGLIV 128 (184)
T ss_pred chhHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHH
Confidence 456778899999999999999874 4444433333333333
No 487
>PRK02237 hypothetical protein; Provisional
Probab=28.26 E-value=1.1e+02 Score=25.07 Aligned_cols=48 Identities=8% Similarity=0.080 Sum_probs=37.7
Q ss_pred hhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhc
Q 005307 549 SRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLS 597 (703)
Q Consensus 549 ~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~ 597 (703)
...|-.++.++-+-++.+++.+ |.+|+..+-+.=.+|..++.+|..++
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~-w~vdg~~Pd~~D~iGa~v~L~G~~iI 103 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWL-WVVDGVRPDRWDWIGAAICLVGMAVI 103 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHH-HHhcCcCCChhHHHhHHHHHHhHHHh
Confidence 4478888998888888898888 99998877776677777777775544
No 488
>COG2119 Predicted membrane protein [Function unknown]
Probab=28.25 E-value=4.7e+02 Score=23.93 Aligned_cols=75 Identities=13% Similarity=0.114 Sum_probs=40.5
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCcc-chhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHH
Q 005307 245 YHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAA-ATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIV 321 (703)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s-~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~ 321 (703)
.++..+...++..|+.-+|.=..... -.+..+.+.. ...+|- .....++..++...+.++++|+.-|.+-.++.+
T Consensus 97 ~~~~~f~~tfi~~FlaE~GDKTQiAT-IaLaA~~~~~~~V~~Gt-~lg~~l~s~laVl~G~~ia~ki~~r~l~~~aal 172 (190)
T COG2119 97 SPRGVFVTTFITFFLAELGDKTQIAT-IALAADYHSPWAVFAGT-TLGMILASVLAVLLGKLIAGKLPERLLRFIAAL 172 (190)
T ss_pred ccccHHHHHHHHHHHHHhccHHHHHH-HHHhhcCCCceeeehhh-HHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 33445555566666655553222111 1223344432 222332 233456677777888889999998887766644
No 489
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=28.11 E-value=1.7e+02 Score=25.13 Aligned_cols=78 Identities=15% Similarity=0.239 Sum_probs=0.0
Q ss_pred hhhhhhhccchhhhhccChhhHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 5 GKKLKETQIQEWQGYYINYKLLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHH 84 (703)
Q Consensus 5 g~~l~~~~~~ew~~~yi~Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~ 84 (703)
.+..-+..+.+++ +..+.....+........+..+ ..|.+.+..=|++++-=-.....++..|+..|..++
T Consensus 55 ~~~~~~e~~~~~~------~~~~~~~~~~~~~~~~~~dklE---~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v 125 (132)
T PF05597_consen 55 TRKKAEEQVEEAR------DQVKSRVDDVKERATGQWDKLE---QAFDERVARALNRLGVPSRKDVEALSARIDQLTAQV 125 (132)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Q ss_pred HHhccCC
Q 005307 85 DALSQHQ 91 (703)
Q Consensus 85 ~~~~~~~ 91 (703)
+.+....
T Consensus 126 ~~l~~~k 132 (132)
T PF05597_consen 126 ERLANKK 132 (132)
T ss_pred HHHhcCC
No 490
>PF07384 DUF1497: Protein of unknown function (DUF1497); InterPro: IPR009972 This entry is represented by Bacteriophage r1t, Orf17. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage and bacterial proteins of around 59 residues in length. Members of this family seem to be found exclusively in Lactococcus lactis and the bacteriophages that infect this organism. The function of this family is unknown.
Probab=28.02 E-value=1.9e+02 Score=19.43 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 58 QIEKIVLFLLEQQGALASRLSDLGE 82 (703)
Q Consensus 58 e~~kv~~f~~~~~~~~~~~~~~~~~ 82 (703)
|++.-+.|-.+...|+.+|++.|..
T Consensus 31 e~~~~~kfnqem~aefheri~klgg 55 (59)
T PF07384_consen 31 EINSQNKFNQEMQAEFHERIKKLGG 55 (59)
T ss_pred hhcchhHhhHHHHHHHHHHHHHhcc
Confidence 5666677888888999999987643
No 491
>KOG2351 consensus RNA polymerase II, fourth largest subunit [Transcription]
Probab=27.78 E-value=3.6e+02 Score=22.67 Aligned_cols=36 Identities=8% Similarity=0.050 Sum_probs=21.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 43 NRLNVLKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGE 82 (703)
Q Consensus 43 ~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~ 82 (703)
+..+.-+-|.+.|.. ++.|-.-|-.|-.+.++.+..
T Consensus 46 ~~~~~s~Vf~kTl~Y----~~~FsRfKn~etv~avr~iLs 81 (134)
T KOG2351|consen 46 DESEMSDVFKKTLQY----LDRFSRFKNRETVRAVRTILS 81 (134)
T ss_pred ccchHHHHHHHHHHH----HHHHHHhcCHHHHHHHHHHHh
Confidence 333333556665554 677777666666666666554
No 492
>PF03249 TSA: Type specific antigen; InterPro: IPR004933 There are several antigenic variants in Rickettsia tsutsugamushi, and a type-specific antigen (TSA) of 56-kilodaltons located on the rickettsial surface is responsible for the variation [, ]. TSA proteins are probably integral membrane proteins. ; GO: 0016021 integral to membrane
Probab=27.65 E-value=2.2e+02 Score=28.82 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcc
Q 005307 101 EAYRAVGHDLLRLLFFVEMNATGLRKILKKFDKR 134 (703)
Q Consensus 101 ~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK~ 134 (703)
+.+.++|+||.+|++- .|++|..+|..-.
T Consensus 342 ~qi~qlykdlvkl~rh-----agi~kame~laaq 370 (503)
T PF03249_consen 342 EQIIQLYKDLVKLQRH-----AGIKKAMEKLAAQ 370 (503)
T ss_pred HHHHHHHHHHHHHHHh-----hhHHHHHHHHhhh
Confidence 5778899999999985 5889999887644
No 493
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=27.60 E-value=2.2e+02 Score=25.08 Aligned_cols=8 Identities=13% Similarity=0.663 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 005307 55 LDDQIEKI 62 (703)
Q Consensus 55 l~~e~~kv 62 (703)
|..||..|
T Consensus 52 LkNeLREV 59 (205)
T PF15079_consen 52 LKNELREV 59 (205)
T ss_pred HHHHHHHH
Confidence 34444444
No 494
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=27.50 E-value=1.1e+03 Score=27.80 Aligned_cols=283 Identities=14% Similarity=0.160 Sum_probs=0.0
Q ss_pred hhHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCC----------
Q 005307 24 KLLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIVLF-LLEQQGALASRLSDLGEHHDALSQHQD---------- 92 (703)
Q Consensus 24 ~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~kv~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 92 (703)
+.++.-+++.....++.-++. ..|.+.-..|++++-.- |.+-.+.+.+.++.....+-.-..+..
T Consensus 165 ~~l~~~v~~~~~~~~~~~~Dl----~~~l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~lg~~i~~~l~~~~~~~L~~ 240 (806)
T PF05478_consen 165 QQLSTGVDDTPNTVNSTLDDL----RTFLNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLLGGDIQDQLGSNVYPALDS 240 (806)
T ss_pred HHHHHHhhhHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhhhHHHHHH
Q ss_pred ----chhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcccCCCCch--------HHHHhhhcCCCccchhhhh
Q 005307 93 ----GSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFDKRFGYRFTD--------YYVKTRANHPYSQLRQVFK 160 (703)
Q Consensus 93 ----~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK~~~~~~~~--------~~~~~~~~~~f~~~q~~~~ 160 (703)
....+..++.+.++...+.+|+.+..-=..+++..=..-.......+.. ..-....+.+|.+++..
T Consensus 241 i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~vK~~L~~~l~~~C~~~~C~~i~~~~~~l~l~~~~~qLP~v-- 318 (806)
T PF05478_consen 241 ILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRGVKRDLNNTLQDLCTNRECNSILSSLDILQLDADFSQLPNV-- 318 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhHHHHHhccccccCCCcccCCCh--
Q ss_pred cccHhHHHHHHHHHHHHHhhccCCcccccCCCCCCCCChhhhhHHHHhhhccCCchHHHHHHhhhhhccccCCCCCCCcc
Q 005307 161 HVGIGAVVGAISRNLAELQDHQGSYISIYDQPALSHPDPVVDSIKAAVNRLSHSTNFLEFLGKHAFIMQEELPSPSGDQD 240 (703)
Q Consensus 161 ~~~~~~~~~~i~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (703)
++.+..+.+.+++.+.+.-....+.....+..-..........+....++..+.....
T Consensus 319 ~~~l~~l~~v~~~nl~~~v~~~~~~~~~ip~~v~~qt~~~v~~ik~~l~~~~~~i~~~---------------------- 376 (806)
T PF05478_consen 319 TSQLNNLEEVIKTNLSSIVQEGNSRFNDIPEKVQNQTSDVVPPIKRDLDSIGKQIRSQ---------------------- 376 (806)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----------------------
Q ss_pred ccccchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHH---hhhhhhhc----------
Q 005307 241 VEQRYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFS---SVYFSAWS---------- 307 (703)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~---~~~~G~l~---------- 307 (703)
....+......+...........-. .....++++.--..++++..+..+...+. +++.|.++
T Consensus 377 ---a~~i~~~~~~~~s~~~~~~~~~~~~--~~~~~~~y~~yR~~~~lil~~~llLIv~~~~lGLl~G~~G~~~~~~p~~r 451 (806)
T PF05478_consen 377 ---AKQIPNQIDSNISDILNNTERSSRS--FEDEYEKYDSYRWIVGLILCCVLLLIVLCLLLGLLCGCCGYRRRADPTDR 451 (806)
T ss_pred ---HHHhHHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q ss_pred ---cccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHH
Q 005307 308 ---NRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIG 344 (703)
Q Consensus 308 ---Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~ 344 (703)
..-|-+-+++...+.+ ++++++.++ ...|++|
T Consensus 452 ~c~~~tGg~~Lm~gv~~~Flf~~~l~l~~-----~~~Fl~G 487 (806)
T PF05478_consen 452 GCSSNTGGNFLMAGVGLSFLFSWFLMLLV-----LFYFLVG 487 (806)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
No 495
>PRK10869 recombination and repair protein; Provisional
Probab=27.36 E-value=83 Score=34.78 Aligned_cols=47 Identities=15% Similarity=0.139 Sum_probs=27.0
Q ss_pred cchhhhhccChhhHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHH
Q 005307 13 IQEWQGYYINYKLLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIVL 64 (703)
Q Consensus 13 ~~ew~~~yi~Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~kv~~ 64 (703)
..+++..|=.|+.+|+.+++....... .....+|.+.--.|+++++.
T Consensus 156 ~~~~~~~y~~~~~~~~~l~~l~~~~~~-----~~~~~d~l~fql~Ei~~~~l 202 (553)
T PRK10869 156 LQEMRAAYQLWHQSCRDLAQHQQQSQE-----RAARKQLLQYQLKELNEFAP 202 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHhCCC
Confidence 456777777788888777776643211 11124455555555665554
No 496
>PF12917 HD_2: HD containing hydrolase-like enzyme ; PDB: 3MZO_B.
Probab=27.36 E-value=3.8e+02 Score=25.16 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHH-H--HhHHHHHHHHHHHHHhhhh
Q 005307 101 EAYRAVGHDLLR-L--LFFVEMNATGLRKILKKFD 132 (703)
Q Consensus 101 ~~~~~~~~~l~~-l--~~~~~ln~~~~~KilKK~d 132 (703)
.++.++..|++. - .-|.++...++.||++..+
T Consensus 140 dal~e~~~Ei~~GN~E~~F~e~y~e~l~~i~~~~~ 174 (215)
T PF12917_consen 140 DALYECFGEIQKGNPEKVFKEIYRESLEKIKKFRD 174 (215)
T ss_dssp HHHHHHHHHHHTT-S-THHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhccC
Confidence 455555556552 1 1388888888888877555
No 497
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=27.06 E-value=4.6e+02 Score=26.59 Aligned_cols=64 Identities=13% Similarity=0.152 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHH--------HHHHHHH
Q 005307 42 ENRLNVLKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAV--------GHDLLRL 113 (703)
Q Consensus 42 ~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~l 113 (703)
++.++.+++| +|+++.+.=|.+|.+|+.+.-+.+.+.++..+. +.+++++.+.++ ...+.+|
T Consensus 4 eEW~eL~~ef-----q~Lqethr~Y~qKleel~~lQ~~C~ssI~~Qkk-----rLk~L~~sLk~~~~~~~~e~~~~i~~L 73 (330)
T PF07851_consen 4 EEWEELQKEF-----QELQETHRSYKQKLEELSKLQDKCSSSISHQKK-----RLKELKKSLKRCKKSLSAEERELIEKL 73 (330)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhccCCChhHHHHHHHH
Q ss_pred Hh
Q 005307 114 LF 115 (703)
Q Consensus 114 ~~ 115 (703)
++
T Consensus 74 ~~ 75 (330)
T PF07851_consen 74 EE 75 (330)
T ss_pred HH
No 498
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=27.03 E-value=3.5e+02 Score=25.54 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 54 MLDDQIEKIVLFLLEQQGALASRLSDLGE 82 (703)
Q Consensus 54 ~l~~e~~kv~~f~~~~~~~~~~~~~~~~~ 82 (703)
.++.|++.-..=|.+...+...++..+.+
T Consensus 146 ~~eeElr~Ae~kfees~E~a~~~M~~i~~ 174 (215)
T cd07593 146 RLEEELRRAKAKYEESSEDVEARMVAIKE 174 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677766655555555555555555444
No 499
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=26.92 E-value=8.4e+02 Score=26.43 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=36.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhcc---ccchhHHHHHHhhhh-hhhhHHHHHHhhhhhhhhhHHHHHHHH
Q 005307 512 TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFI---WSTSRVAIFLACLGL-TVLPVNIIVGNYISNIFEERQVLLASE 587 (703)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g~~~~~~~~-~~~~~~~~~~~~l~~r~g~r~~~~~~~ 587 (703)
.+.+..+.+..++..+.+...-. +.+.+. .++..+..+-...-+ ++++...+.. ++.++..+.++..+..
T Consensus 26 ~~kflpl~Ll~f~I~~ny~~lR~-----lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~-kl~~~lt~~~vF~~~~ 99 (509)
T COG3202 26 LKKFLPLALLFFCILFNYNLLRS-----LKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQ-KLLNILTREKVFYIIL 99 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----hhhheEeecCcchhhHHHHHHHhchHHHHHHHHHH-HHHhhcCHHHHHHHHH
Confidence 34555555555555554443322 333332 234445554444433 3344455556 8889988888765443
Q ss_pred H
Q 005307 588 I 588 (703)
Q Consensus 588 ~ 588 (703)
.
T Consensus 100 ~ 100 (509)
T COG3202 100 G 100 (509)
T ss_pred H
Confidence 3
No 500
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=26.74 E-value=5.7e+02 Score=24.42 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=0.0
Q ss_pred hhHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHH
Q 005307 24 KLLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAY 103 (703)
Q Consensus 24 ~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (703)
+..|..+.+..+..++.+++.+.....=.-.|+. |.++.+...+|..-|+.++++ .+.+.+.+
T Consensus 104 ~aikeql~kyiReLEQaNDdLErakRati~sleD--------feqrLnqAIErnAfLESELdE---------ke~llesv 166 (333)
T KOG1853|consen 104 HAIKEQLRKYIRELEQANDDLERAKRATIYSLED--------FEQRLNQAIERNAFLESELDE---------KEVLLESV 166 (333)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHH--------HHHHHHHHHHHHHHHHHHhhH---------HHHHHHHH
Q ss_pred HHHHHHHHHHHh
Q 005307 104 RAVGHDLLRLLF 115 (703)
Q Consensus 104 ~~~~~~l~~l~~ 115 (703)
.++..|..+|++
T Consensus 167 qRLkdEardlrq 178 (333)
T KOG1853|consen 167 QRLKDEARDLRQ 178 (333)
T ss_pred HHHHHHHHHHHH
Done!