Query 005307
Match_columns 703
No_of_seqs 727 out of 3504
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 21:37:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/005307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 100.0 6.9E-34 2.4E-38 306.2 30.0 371 244-672 24-411 (451)
2 3o7q_A L-fucose-proton symport 100.0 5.4E-32 1.8E-36 290.3 31.3 361 244-672 22-409 (438)
3 4gc0_A D-xylose-proton symport 100.0 3.4E-31 1.2E-35 288.5 18.8 390 244-666 8-427 (491)
4 2gfp_A EMRD, multidrug resista 100.0 1.8E-31 6.2E-36 279.8 15.5 338 251-666 3-347 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 3.5E-29 1.2E-33 272.5 26.3 392 247-666 12-443 (491)
6 2cfq_A Lactose permease; trans 99.9 2E-26 6.9E-31 244.7 18.4 349 248-666 7-370 (417)
7 2xut_A Proton/peptide symporte 99.9 9E-24 3.1E-28 231.8 23.8 168 249-429 13-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.3 2.1E-11 7.3E-16 130.3 16.0 172 248-430 252-433 (451)
9 2cfq_A Lactose permease; trans 99.3 2.9E-11 1E-15 127.7 14.1 153 271-436 243-405 (417)
10 3o7q_A L-fucose-proton symport 99.2 1.6E-10 5.5E-15 122.9 15.2 161 248-424 258-426 (438)
11 4gc0_A D-xylose-proton symport 99.1 6.5E-10 2.2E-14 120.2 15.8 184 252-438 281-470 (491)
12 4aps_A DI-OR tripeptide H+ sym 99.1 9.1E-10 3.1E-14 119.0 15.8 147 513-666 13-167 (491)
13 2xut_A Proton/peptide symporte 99.0 1.9E-09 6.4E-14 117.6 14.8 149 512-666 11-169 (524)
14 2gfp_A EMRD, multidrug resista 98.9 4.5E-09 1.5E-13 109.2 9.9 142 517-666 4-145 (375)
15 3sjb_C Golgi to ER traffic pro 88.3 2.5 8.5E-05 32.0 7.7 66 69-134 24-89 (93)
16 3ghg_A Fibrinogen alpha chain; 87.5 3.7 0.00013 41.7 10.8 61 66-131 108-168 (562)
17 3okq_A BUD site selection prot 82.9 18 0.00063 29.7 12.5 81 49-129 9-89 (141)
18 1deq_A Fibrinogen (alpha chain 76.3 16 0.00056 35.5 10.1 54 57-115 102-155 (390)
19 3mov_A Lamin-B1; LMNB1, B-type 76.1 24 0.00084 27.1 10.8 67 53-128 22-88 (95)
20 2vkj_A TM1634; membrane protei 73.7 7.2 0.00025 29.0 5.3 16 56-71 85-100 (106)
21 2akf_A Coronin-1A; coiled coil 66.6 15 0.00051 20.6 4.9 28 54-85 3-30 (32)
22 3tnu_A Keratin, type I cytoske 64.9 57 0.002 26.8 12.8 68 52-128 61-128 (131)
23 3pp5_A BRK1, protein brick1; t 64.5 34 0.0012 24.6 7.1 40 48-87 18-57 (73)
24 1m1j_A Fibrinogen alpha subuni 64.4 46 0.0016 33.2 10.5 73 52-129 95-167 (491)
25 3vlc_E Golgi to ER traffic pro 63.8 4.5 0.00015 30.7 2.6 61 70-130 32-92 (94)
26 3p8c_E Probable protein brick1 62.3 39 0.0013 24.4 7.1 40 48-87 18-57 (75)
27 3tnu_B Keratin, type II cytosk 61.7 65 0.0022 26.3 12.4 69 51-128 58-126 (129)
28 1avo_B 11S regulator; proteaso 61.0 67 0.0023 26.7 9.6 83 46-135 49-136 (140)
29 3lay_A Zinc resistance-associa 60.9 50 0.0017 28.7 9.2 56 57-112 74-131 (175)
30 4ev6_A Magnesium transport pro 58.8 56 0.0019 32.1 10.6 69 59-134 162-230 (339)
31 4egw_A Magnesium transport pro 58.3 73 0.0025 30.2 11.1 68 59-133 162-229 (280)
32 1gk4_A Vimentin; intermediate 54.1 65 0.0022 24.0 10.8 69 52-129 10-78 (84)
33 2lf0_A Uncharacterized protein 53.0 59 0.002 25.6 7.3 48 70-117 12-59 (123)
34 3trt_A Vimentin; cytoskeleton, 50.9 69 0.0023 23.3 10.5 57 53-114 20-76 (77)
35 2l5g_B Putative uncharacterize 49.6 44 0.0015 20.9 4.8 28 52-83 11-38 (42)
36 3t98_B Nucleoporin NUP58/NUP45 49.4 55 0.0019 24.9 6.6 32 49-80 7-38 (93)
37 2pih_A Protein YMCA; regulate 48.3 62 0.0021 27.3 7.7 59 19-86 25-84 (151)
38 3t98_B Nucleoporin NUP58/NUP45 47.8 90 0.0031 23.8 8.5 26 63-88 7-32 (93)
39 2iub_A CORA, divalent cation t 47.3 89 0.003 31.0 10.0 65 59-130 186-250 (363)
40 2p2u_A HOST-nuclease inhibitor 46.3 60 0.002 28.1 7.4 15 112-126 67-81 (171)
41 2bbh_A Divalent cation transpo 46.0 51 0.0017 31.0 7.7 65 61-132 179-243 (269)
42 3nvo_A Zinc transport protein 43.8 93 0.0032 29.0 9.2 65 59-131 153-217 (264)
43 1x8y_A Lamin A/C; structural p 43.4 1E+02 0.0035 23.1 10.4 67 54-129 14-80 (86)
44 4ioe_A Secreted protein ESXB; 43.0 1E+02 0.0035 23.0 11.4 31 58-88 13-43 (93)
45 3gwk_C SAG1039, putative uncha 42.4 1.1E+02 0.0037 23.2 10.0 21 66-86 20-40 (98)
46 3sja_C Golgi to ER traffic pro 42.4 86 0.0029 22.0 6.4 47 69-115 7-53 (65)
47 3n1e_A Vacuolar protein sortin 41.2 1.1E+02 0.0038 25.4 7.8 60 53-112 4-70 (141)
48 2v0o_A FCHO2, FCH domain only 40.6 2E+02 0.0069 26.8 11.1 13 21-33 18-30 (276)
49 1gqe_A Release factor 2, RF2; 40.6 2.7E+02 0.0091 27.4 11.6 19 19-37 23-41 (365)
50 3oja_B Anopheles plasmodium-re 40.3 2.6E+02 0.0088 29.7 13.2 37 99-135 549-585 (597)
51 3ghg_A Fibrinogen alpha chain; 39.9 1.5E+02 0.0051 30.4 9.8 34 53-86 109-142 (562)
52 1z0k_B FYVE-finger-containing 39.9 67 0.0023 22.8 5.3 24 91-114 43-66 (69)
53 2yo3_A General control protein 39.5 1.1E+02 0.0037 28.4 8.1 31 57-87 205-235 (268)
54 1yzm_A FYVE-finger-containing 39.2 82 0.0028 20.8 5.8 39 76-114 10-48 (51)
55 2hn1_A CORA, magnesium and cob 38.8 1.2E+02 0.004 28.4 9.0 65 60-132 179-243 (266)
56 3mq9_A Bone marrow stromal ant 38.3 1.4E+02 0.0049 30.6 10.4 29 58-86 394-422 (471)
57 3iyk_A VP5; icosahedral virus; 37.8 3.4E+02 0.012 27.6 13.2 81 49-130 117-207 (526)
58 3ci9_A Heat shock factor-bindi 37.7 60 0.0021 21.2 4.4 35 49-86 8-42 (48)
59 1z8u_A Alpha-hemoglobin stabil 35.6 22 0.00075 26.3 2.3 51 13-76 41-91 (102)
60 3b2e_E Golgi to ER traffic pro 41.7 7.9 0.00027 28.8 0.0 60 71-130 23-82 (84)
61 3zbh_A ESXA; unknown function, 33.9 1.5E+02 0.0051 22.3 11.0 13 21-33 9-21 (99)
62 4g2k_A General control protein 33.7 1.7E+02 0.0057 23.2 7.1 33 100-132 59-91 (125)
63 1m1j_B Fibrinogen beta chain; 31.3 2.9E+02 0.01 28.1 10.6 21 15-35 86-107 (464)
64 3twe_A Alpha4H; unknown functi 30.5 65 0.0022 17.1 3.1 14 71-84 11-24 (27)
65 3r2p_A Apolipoprotein A-I; amp 30.4 2.5E+02 0.0087 24.4 9.1 37 49-85 70-106 (185)
66 2pnv_A Small conductance calci 30.1 63 0.0022 20.5 3.5 20 68-87 16-35 (43)
67 2d9d_A BAG family molecular ch 29.4 1.5E+02 0.0053 21.6 5.8 62 53-119 20-81 (89)
68 2de0_X Alpha-(1,6)-fucosyltran 29.4 1.8E+02 0.0061 30.5 9.0 36 48-86 61-96 (526)
69 2wuj_A Septum site-determining 28.7 78 0.0027 21.5 4.1 32 47-82 24-55 (57)
70 3oja_B Anopheles plasmodium-re 28.6 3.2E+02 0.011 28.9 11.5 19 98-116 562-580 (597)
71 4h22_A Leucine-rich repeat fli 28.1 2E+02 0.007 22.1 6.6 12 124-135 77-88 (103)
72 2fic_A Bridging integrator 1; 28.1 3.5E+02 0.012 24.7 10.8 20 113-133 136-155 (251)
73 1go4_E MAD1 (mitotic arrest de 27.0 2.2E+02 0.0074 22.0 7.8 20 96-115 70-89 (100)
74 2xus_A Breast cancer metastasi 25.9 1.4E+02 0.0049 19.5 5.9 25 64-88 21-45 (49)
75 4avm_A Bridging integrator 2; 25.4 3.9E+02 0.013 24.3 11.5 13 24-36 7-19 (237)
76 2fic_A Bridging integrator 1; 25.4 2.8E+02 0.0096 25.4 9.0 16 19-34 156-171 (251)
77 3sjb_C Golgi to ER traffic pro 25.1 2.2E+02 0.0077 21.5 6.3 24 17-40 19-42 (93)
78 3arc_T Photosystem II reaction 25.1 1.1E+02 0.0038 17.9 3.8 15 423-437 15-29 (32)
79 3vem_A Helicase protein MOM1; 24.9 2.5E+02 0.0087 22.1 8.2 19 55-73 66-84 (115)
80 1dkg_A Nucleotide exchange fac 24.7 1.8E+02 0.0061 25.8 6.9 14 119-132 125-138 (197)
81 1td6_A F10_ORF294, hypothetica 24.5 1E+02 0.0035 27.8 5.1 61 14-86 25-85 (306)
82 3lhp_S 4E10_D0_1ISEA_004_N (T9 24.4 2.3E+02 0.0077 22.8 6.6 28 46-73 93-120 (123)
83 1mof_A Moloney murine leukemia 24.1 1.6E+02 0.0054 19.8 4.7 36 95-130 3-38 (55)
84 2g9p_A Antimicrobial peptide l 24.0 20 0.00067 18.8 0.3 14 302-315 2-15 (26)
85 3na7_A HP0958; flagellar bioge 23.8 2.2E+02 0.0075 26.4 7.8 10 126-135 176-185 (256)
86 1fxk_C Protein (prefoldin); ar 23.5 2.6E+02 0.0088 22.7 7.4 30 58-87 85-114 (133)
87 1z0j_B FYVE-finger-containing 23.2 1.8E+02 0.0063 19.8 5.6 36 79-114 20-55 (59)
88 1ebo_A Ebola virus envelope pr 23.1 2.5E+02 0.0086 21.3 9.8 33 102-134 49-81 (131)
89 2qup_A BH1478 protein; structu 22.7 3.3E+02 0.011 22.6 7.9 53 49-107 25-77 (145)
90 3mkt_A Multi antimicrobial ext 22.6 5.8E+02 0.02 25.4 26.5 22 361-382 149-170 (460)
91 2oeq_A Protein of unknown func 22.3 1.1E+02 0.0036 24.7 4.6 16 19-34 24-39 (122)
92 1uru_A Amphiphysin; endocytosi 21.6 4.5E+02 0.015 23.7 12.0 13 24-36 11-23 (244)
93 3efg_A Protein SLYX homolog; x 21.5 2.1E+02 0.0073 20.8 5.6 10 74-83 13-22 (78)
94 1xaw_A Occludin; coiled-coil, 21.5 3.4E+02 0.012 22.3 8.6 13 75-87 73-85 (140)
95 4gfq_A Ribosome-recycling fact 21.3 2.1E+02 0.0071 25.6 6.5 23 51-73 184-206 (209)
96 2jo8_A Serine/threonine-protei 20.9 1.9E+02 0.0065 19.1 5.9 23 53-75 24-46 (51)
97 2p61_A Hypothetical protein TM 20.7 3.9E+02 0.013 22.7 8.4 56 49-110 35-90 (162)
98 3ggz_E Vacuolar protein-sortin 20.2 61 0.0021 18.4 1.8 15 67-81 14-28 (29)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=6.9e-34 Score=306.25 Aligned_cols=371 Identities=13% Similarity=0.072 Sum_probs=292.1
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 005307 244 RYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL 323 (703)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~ 323 (703)
+.+|+.+..++++.++..++.+...+.+|.+.+++ .++.+.|++.+++.++.+++++++|+++||+|||++++++.++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~ 102 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILA 102 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHH
Confidence 44577788888888999999999999999999999 99999999999999999999999999999999999999997765
Q ss_pred -HHHHHHHh----hcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-
Q 005307 324 -VGNTLYAM----AYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF- 395 (703)
Q Consensus 324 -~~~~~~~~----a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l- 395 (703)
++.+++++ + ++++.++++|++.|++.|. +...++++|++|+++|++++++.+.+..+|.++||++++++
T Consensus 103 ~~~~~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 103 AAVMLFMGFVPWAT---SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHCHHHH---SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHhhhhcc---ccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 8 9999999999999999886 88999999999999999999999999999999999999987
Q ss_pred -ccc-ccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcc
Q 005307 396 -QTN-FKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQ 473 (703)
Q Consensus 396 -~~g-~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (703)
..| | |++|++.+++.++..++.++.+||+++.....+..+..
T Consensus 180 ~~~g~w----------~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 223 (451)
T 1pw4_A 180 AWFNDW----------HAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK-------------------------- 223 (451)
T ss_dssp HHTCCS----------TTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC--------------------------
T ss_pred HHhccH----------HHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc--------------------------
Confidence 677 8 99999999988888777777888877643321000000
Q ss_pred cCCccccccCCCCCCCCcccccccCCCccc--HHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhH
Q 005307 474 KDENDDQELDNDDHDEDDEDSKITHRPVTS--IMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRV 551 (703)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 551 (703)
+...+ + .+ ....+.....+ .+..+ .++.++...+..++..+....+..++|.|+.+.+|+++.++
T Consensus 224 -~~~~~------~---~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 290 (451)
T 1pw4_A 224 -NDYPD------D---YN-EKAEQELTAKQIFMQYVL--PNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS 290 (451)
T ss_dssp -CC-----------------------CCTHHHHHHTS--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH
T ss_pred -ccccc------c---ch-hhhhcccccccchHHHHH--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 00000 0 00 00000001111 12222 27788888888888888888888999999998899999999
Q ss_pred HHHHHhhhhhhhhHHHHHHhhhhhhh--hhHHHHHHHHHHHH-HHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHH
Q 005307 552 AIFLACLGLTVLPVNIIVGNYISNIF--EERQVLLASEIIVC-IGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNL 628 (703)
Q Consensus 552 g~~~~~~~~~~~~~~~~~~~~l~~r~--g~r~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (703)
|++.++.+++.+++..+.+ ++.||+ ++|+.+..+..+.. ++++++.... ..+.+...+..++.+++.+...+...
T Consensus 291 ~~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 368 (451)
T 1pw4_A 291 SWAYFLYEYAGIPGTLLCG-WMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP-AGNPTVDMICMIVIGFLIYGPVMLIG 368 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC-TTCHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc-ccCHHHHHHHHHHHHHHHhchHHHHH
Confidence 9999999999999988888 999999 99998887766655 5544433321 23455666667777777778888888
Q ss_pred HHHHhhccCCCcccccchhhhHHhhhhh-hhhhccceee-eecccc
Q 005307 629 SLLSRVMSSRLSRGTYNGGLLSTEAGTL-ARVIADGTIT-LSGYLG 672 (703)
Q Consensus 629 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~-g~~~gp~~~~-~~~~~~ 672 (703)
+++.+..|++ .+|++.|+.+ ....+ |..++|.+.+ +.+..+
T Consensus 369 ~~~~~~~~~~-~~g~~~~~~~--~~~~~~g~~~~~~~~g~l~~~~g 411 (451)
T 1pw4_A 369 LHALELAPKK-AAGTAAGFTG--LFGYLGGSVAASAIVGYTVDFFG 411 (451)
T ss_dssp HHHHHTSCTT-HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhchh-hhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999998 8999999984 47778 9999999665 444433
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=5.4e-32 Score=290.29 Aligned_cols=361 Identities=11% Similarity=0.042 Sum_probs=277.4
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 005307 244 RYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL 323 (703)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~ 323 (703)
+.++..+.++++..++..++.+...+.+|.+.+++|.+..+.|++.+++.++.+++.+++|+++||+|||++++++.+..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~ 101 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence 34566777777888888888899999999999999999999999999999999999999999999999999999997755
Q ss_pred -HHHHHH---HhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--
Q 005307 324 -VGNTLY---AMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-- 395 (703)
Q Consensus 324 -~~~~~~---~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-- 395 (703)
++.+++ +++ ++++.++++|++.|++.|. +...++++|++|+++|++++++.+.+.++|.++||++++++
T Consensus 102 ~~~~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~ 178 (438)
T 3o7q_A 102 ALGAALFWPAAEI---MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL 178 (438)
T ss_dssp HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhcccc---ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888 788 9999999999999999887 88999999999999999999999999999999999999988
Q ss_pred ccccc----------------ccccccccchhHHHHHHHHHHHHHHHHHHh-ccCCCccccccccccccccccccccccC
Q 005307 396 QTNFK----------------IYKLTFNEDTLPGWVMALLWLVYLLWLWIS-FREPPLETKENLVPQEANAGLLINCTVD 458 (703)
Q Consensus 396 ~~g~~----------------~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~-l~e~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (703)
..+.. +......+||++|++.+++.++..++.++. .||+++...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~------------------ 240 (438)
T 3o7q_A 179 SNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHS------------------ 240 (438)
T ss_dssp TSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCC------------------
T ss_pred cccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccc------------------
Confidence 22210 000001115999988877766655444331 2332221100
Q ss_pred CCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhH
Q 005307 459 NGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSV 538 (703)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (703)
. +++.....+++++++ +|.++...+..++..........+.|.
T Consensus 241 -------------------------------~----~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (438)
T 3o7q_A 241 -------------------------------D----AKQGSFSASLSRLAR--IRHWRWAVLAQFCYVGAQTACWSYLIR 283 (438)
T ss_dssp -------------------------------C----SSTTSHHHHHHHHTT--CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------c----ccccchhhhHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000111123333333 788888888888888888888889999
Q ss_pred H-hhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHH
Q 005307 539 I-TEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITF 617 (703)
Q Consensus 539 ~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (703)
| +.+.+|+++.+++...++.+++.+++..+.+ ++.||+++|+.+..+.++.++++++.... .+.+ ..+..++.+
T Consensus 284 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~g 358 (438)
T 3o7q_A 284 YAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT-WLISRFAPHKVLAAYALIAMALCLISAFA---GGHV-GLIALTLCS 358 (438)
T ss_dssp HHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHHHHC---CHHH-HHHHHHHHH
T ss_pred HhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHc---CCcH-HHHHHHHHH
Confidence 9 8888899999999999999999999988877 99999999999998888877776544433 2222 234446667
Q ss_pred hhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee-eecccc
Q 005307 618 VAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT-LSGYLG 672 (703)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~-~~~~~~ 672 (703)
++.+...+...++..+.+|++ ++++.+.. . .+.+|..++|.+.+ +.+..+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~-~~~~g~~~~~~~~g~l~~~~g 409 (438)
T 3o7q_A 359 AFMSIQYPTIFSLGIKNLGQD--TKYGSSFI--V-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_dssp HHHTTHHHHHHHHHHSSCGGG--HHHHHHHH--H-HTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhcccc--ccchhhHH--H-HHHHHHHHHHHHHHHHHHHhc
Confidence 888888899999989999876 66556654 3 55689999999666 444444
No 3
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.97 E-value=3.4e-31 Score=288.50 Aligned_cols=390 Identities=15% Similarity=0.066 Sum_probs=257.5
Q ss_pred cchhHHHHHHHHHHHHHHHhhhhhccchhHHHHhcC--------ccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhH
Q 005307 244 RYHFTSLLLNLVNTFLYMVNTYVIVPTADNYSLSLG--------AAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPL 315 (703)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~ 315 (703)
++.|...++..++.++.+++.+++.+++|.+..+++ .++.+.|++.+++.+|.++|++++|+++||+|||++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~ 87 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS 87 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 444555566677788888999999999999888773 335678999999999999999999999999999999
Q ss_pred HHHHHHHH-HHHHHHHhhc---------------ccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHH
Q 005307 316 VFSSIVLL-VGNTLYAMAY---------------DLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGF 377 (703)
Q Consensus 316 l~~~~~~~-~~~~~~~~a~---------------~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~ 377 (703)
++++.+++ ++.++++++. ..+|+++++++|+++|+|.|. +++.++++|++|+++|++..++.
T Consensus 88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~ 167 (491)
T 4gc0_A 88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence 99997765 9999988421 018999999999999999887 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCcccccccccccccccccccc
Q 005307 378 VSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINC 455 (703)
Q Consensus 378 ~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~ 455 (703)
+.+..+|.++++.++..+ ..++ .......||+++.+..+..++.+ +..+++||+|++...+++.+++.+..++..
T Consensus 168 ~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~peSp~~L~~~~~~~~a~~~l~~~~ 244 (491)
T 4gc0_A 168 QFAIIFGQLLVYCVNYFIARSGDA--SWLNTDGWRYMFASECIPALLFL-MLLYTVPESPRWLMSRGKQEQAEGILRKIM 244 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCT--TTTTTTHHHHHHHTTHHHHHHHH-HHGGGSCCCHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcchhhcccccc--ccccchhhHHHhhhhhhhhhhhh-hhhhcCCCChHHHHHcCchhHHHHhHHHhc
Confidence 999999999999988877 2221 11222345777777766665555 445568999988766554444321111000
Q ss_pred ccCCCCCCcccccchhcccCCccccccCCCCCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhh
Q 005307 456 TVDNGSTRPLLLNSEAKQKDENDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAE 535 (703)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (703)
..+ ..+++..+ ....................++........++..+.......+
T Consensus 245 ~~~-------------~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (491)
T 4gc0_A 245 GNT-------------LATQAVQE-------------IKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLY 298 (491)
T ss_dssp HHH-------------HHHHHHHH-------------HHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCc-------------hhHHHHHH-------------HHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHh
Confidence 000 00000000 0000000000001111111344444444444444444344444
Q ss_pred hhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccc-cccccchhHHHHHHH
Q 005307 536 SSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFH-ILVPYSVPQYVGSAL 614 (703)
Q Consensus 536 ~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~ 614 (703)
+.+++....+.+.........+.+++..++..+.+ ++.||+|||+.++.+...++++++.+.. .......+..++..+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 377 (491)
T 4gc0_A 299 YAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAI-MTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSML 377 (491)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHH-HHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 45555555677777666666777777778777767 9999999999998888777776553221 111122223333333
Q ss_pred HHHhhhh-hhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 615 ITFVAAE-VLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 615 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
++..+++ ...++.+.+.+|.+|.+ .|++..|+. ...+.++++++|.+..
T Consensus 378 ~~~~~~~~~~~~~~~~~~~E~fPt~-~R~~~~g~~--~~~~~~~~~i~~~~~p 427 (491)
T 4gc0_A 378 FYVAAFAMSWGPVCWVLLSEIFPNA-IRGKALAIA--VAAQWLANYFVSWTFP 427 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHSSCTT-THHHHHHHH--HHHHHHHHHHHHTHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhCCHh-HHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3333322 34567788999999999 899888887 4477788888777443
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=1.8e-31 Score=279.83 Aligned_cols=338 Identities=13% Similarity=0.103 Sum_probs=272.1
Q ss_pred HHHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHH
Q 005307 251 LLNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLY 329 (703)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~ 329 (703)
.++++..++..++.+...+.+|.+.+++|.++.+.|++.+++.++..++++++|+++||+|||++++.+.+.. ++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 4566777888889999999999999999999999999999999999999999999999999999999887755 999999
Q ss_pred HhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--cccccccccc
Q 005307 330 AMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTNFKIYKLT 405 (703)
Q Consensus 330 ~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~ 405 (703)
+++ ++++.++++|++.|++.+. +...+++.|++|+++|++++++.+.+..+|.++||.+++++ ..||
T Consensus 83 ~~~---~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~------ 153 (375)
T 2gfp_A 83 VTT---SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW------ 153 (375)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH------
T ss_pred HHh---ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH------
Confidence 999 9999999999999999887 88999999999999999999999999999999999999998 5677
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCCccccccCCC
Q 005307 406 FNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDENDDQELDND 485 (703)
Q Consensus 406 ~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (703)
|++|++.+++.++..+...+.+||+++...++
T Consensus 154 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 185 (375)
T 2gfp_A 154 ----RACYLFLLVLCAGVTFSMARWMPETRPVDAPR-------------------------------------------- 185 (375)
T ss_dssp ----HHHHHHHHHHHHHHHCCCCCSSCCCSTTTCCC--------------------------------------------
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHCcccCCCCccc--------------------------------------------
Confidence 99999988888777665556677765432110
Q ss_pred CCCCCcccccccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhH
Q 005307 486 DHDEDDEDSKITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPV 565 (703)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~ 565 (703)
.+...++++..+ +|.++...+..++.......+..+.|.|+.+.+|+++.++|...++.+++..++
T Consensus 186 ------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~ 251 (375)
T 2gfp_A 186 ------------TRLLTSYKTLFG--NSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFG 251 (375)
T ss_dssp ------------CCTTTCSTHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred ------------ccHHHHHHHHhc--CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 001122334444 677888888888888888888888999999888999999999999999999888
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHH-HHHHHhhcccc-ccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccc
Q 005307 566 NIIVGNYISNIFEERQVLLASEII-VCIGILLSFHI-LVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGT 643 (703)
Q Consensus 566 ~~~~~~~l~~r~g~r~~~~~~~~~-~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 643 (703)
..+.+ ++.||.+++ +..+..+ ..+++.+.... ....+.+...+..++.+++.+...+...+++.+..| + .+|+
T Consensus 252 ~~~~~-~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p-~-~~g~ 326 (375)
T 2gfp_A 252 AWFAG-RPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP-F-LAGT 326 (375)
T ss_dssp HHHHH-TTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-H-HHHH
T ss_pred HHHHH-HHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-c-ccch
Confidence 88877 999999872 2333333 33332221111 011244556667777788888888999999999998 5 6999
Q ss_pred cchhhhHHhhhhhhhhhccceee
Q 005307 644 YNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 644 ~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+.|..+ ....+|..++|.+.+
T Consensus 327 ~~g~~~--~~~~~g~~~~~~~~g 347 (375)
T 2gfp_A 327 AGALVG--GLQNIGSGVLASLSA 347 (375)
T ss_dssp HHHHHH--HHHHHHHHCCSTTCT
T ss_pred HHHHHH--HHHHHHHHHHHHHHH
Confidence 999984 477899999999554
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=3.5e-29 Score=272.52 Aligned_cols=392 Identities=12% Similarity=0.000 Sum_probs=258.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhccchhHHHHh------cCccchhhhHHHHHHHHHHHHHhhhhhhhccc-cCchhHHHHH
Q 005307 247 FTSLLLNLVNTFLYMVNTYVIVPTADNYSLS------LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNR-SYLKPLVFSS 319 (703)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr-~Grr~~l~~~ 319 (703)
++.++.+++..++..+++....+.++.+..+ +|.+..+.|++.+++.++..++++++|+++|| +|||++++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~ 91 (491)
T 4aps_A 12 PLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWG 91 (491)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 3455666667777777777666666666654 89999999999999999999999999999999 8999999999
Q ss_pred HHHH-HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhh--hhhHHHHHHHHHHHHHHHHHHhhhh
Q 005307 320 IVLL-VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKL--RMRASAGFVSASALGMACGPALACL 394 (703)
Q Consensus 320 ~~~~-~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~--R~~~~~~~~~~~~~G~~lgp~i~~~ 394 (703)
.+.. ++.++++++ ++++.++++|++.|++.|. +...++++|++|+++ |+.++++++.+.++|.++||.++++
T Consensus 92 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 168 (491)
T 4aps_A 92 GVLIMLGHIVLALP---FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGA 168 (491)
T ss_dssp HHHHHHHHHHHHSC---CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHH
Confidence 7765 999999999 9999999999999999887 889999999999988 7788888999999999999999999
Q ss_pred h--cccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhc
Q 005307 395 F--QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAK 472 (703)
Q Consensus 395 l--~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (703)
+ ..|| |++|++.++..++.+++.++..|+..+......+......+..+..+. .+. .+....-.
T Consensus 169 l~~~~g~----------~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~---~l~~~~~~ 234 (491)
T 4aps_A 169 AQEAAGY----------HVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVK-VSL---AVAGFIAI 234 (491)
T ss_dssp HHHHSCH----------HHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHH-CCC---CCHHHHHH
T ss_pred HHhhhhH----------HHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHH-HHH---HHHHHHHH
Confidence 9 6787 999999887777666655544343322111000000000000000000 000 00000000
Q ss_pred ccCCccccccCCCCCCCCccccc---------------ccCCCcccHHHHHHhhCcchHHHHHHHHHHHHHHHHHHhhhh
Q 005307 473 QKDENDDQELDNDDHDEDDEDSK---------------ITHRPVTSIMSAYRLLTPSVKVQLFVYFMLKYAMEILLAESS 537 (703)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 537 (703)
....... +... .+.... ...+. .......+......+...+..++...........+|
T Consensus 235 ~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (491)
T 4aps_A 235 IVVMNLV---GWNS---LPAYINLLTIVAIAIPVFYFAWMISS-VKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLA 307 (491)
T ss_dssp HHHHHHH---SSCC---TTHHHHHHHHHHHHHHHHHHHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHH
T ss_pred HHHHHhc---cCcc---cccchhhhhHHHHHHHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 0000000 0000 000000 00000 000000000022234444445555555556666778
Q ss_pred HHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHH-----HHHHHHHHHHhhcccc------ccccch
Q 005307 538 VITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLL-----ASEIIVCIGILLSFHI------LVPYSV 606 (703)
Q Consensus 538 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~-----~~~~~~~i~~~~~~~~------~~~~~~ 606 (703)
.|..+..+.+....+....+.+++..++..+.+ ++.||++||+... .+..+.+++++++... ..+.+.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (491)
T 4aps_A 308 TFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFA-WLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSP 386 (491)
T ss_dssp HHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHH-HHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCT
T ss_pred HHHHHHhccCccCHHHHhccchHHHHHHHHHHH-HHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccH
Confidence 888887888877778777788888888888877 9999999875543 6666666665433221 112355
Q ss_pred hHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 607 PQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+..++..++.+++.+...+...+++.+..|++ .+|++.|+. .....+|.+++|.+.+
T Consensus 387 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~-~~g~~~g~~--~~~~~~g~~i~~~~~~ 443 (491)
T 4aps_A 387 LWLVGSWALVILGEMLISPVGLSVTTKLAPKA-FNSQMMSMW--FLSSSVGSALNAQLVT 443 (491)
T ss_dssp HHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTT-CSSSSTHHH--HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHH-HHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 66667777888888888889999999999999 899999998 4478899999999655
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.94 E-value=2e-26 Score=244.66 Aligned_cols=349 Identities=13% Similarity=0.097 Sum_probs=225.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HH
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VG 325 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~ 325 (703)
+..+.+....++..++.+...|.+|.+.++ +|.++.+.|++.+++.++.+++++++|+++||+|||++++++.+.. ++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~ 86 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVM 86 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSC
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 344555666677777788888999998765 8999999999999999999999999999999999999998876543 32
Q ss_pred ---HHHHHhhcccchhH-HHHHHHHHHhhcCcc--hhhhHHhhccCCh--hhhhhHHHHHHHHHHHHHHHHHHhhhhh-c
Q 005307 326 ---NTLYAMAYDLNSIA-VLLIGRLFCGLGSAR--AVNRRYISDCVPL--KLRMRASAGFVSASALGMACGPALACLF-Q 396 (703)
Q Consensus 326 ---~~~~~~a~~~~~~~-~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~--~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~ 396 (703)
...+.++ +... .++.++++.|++.|. +.....+.++.++ ++++..++.......+|..+||.+++++ .
T Consensus 87 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~ 163 (417)
T 2cfq_A 87 FAPFFIFIFG---PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163 (417)
T ss_dssp HHHHHHHTHH---HHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333 2211 234566676766554 3333334444332 4567677788788899999999999998 7
Q ss_pred ccccccccccccchhHHHHHHHHHHHHHHHHHHhccCCCccccccccccccccccccccccCCCCCCcccccchhcccCC
Q 005307 397 TNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWISFREPPLETKENLVPQEANAGLLINCTVDNGSTRPLLLNSEAKQKDE 476 (703)
Q Consensus 397 ~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (703)
.+| +++|++.+++.++.++..++..||+++.... ++.
T Consensus 164 ~~~----------~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----------------------------- 200 (417)
T 2cfq_A 164 INN----------QFVFWLGSGCALILAVLLFFAKTDAPSSATV----ANA----------------------------- 200 (417)
T ss_dssp HCS----------HHHHTTTTTTTTTHHHHSCSSCCCCSCSSCS----SSS-----------------------------
T ss_pred hch----------hHHHHHHHHHHHHHHHHHHHcCccccccccc----ccc-----------------------------
Confidence 777 8898887766544443333222333211000 000
Q ss_pred ccccccCCCCCCCCcccccccCCCcccHHHHHHhh-CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhcc---ccchhHH
Q 005307 477 NDDQELDNDDHDEDDEDSKITHRPVTSIMSAYRLL-TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFI---WSTSRVA 552 (703)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~g 552 (703)
.+ . .......++..... ++.++...+..+.....+..+...+|.|+.+.++ .+....|
T Consensus 201 -------------~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 262 (417)
T 2cfq_A 201 -------------VG----A-NHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFG 262 (417)
T ss_dssp -------------SS----S-CCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHH
T ss_pred -------------cc----c-ccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHH
Confidence 00 0 00001122222222 6666665555454444555555567777766544 3345567
Q ss_pred HHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHH
Q 005307 553 IFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLS 632 (703)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (703)
+..++.+++.+++..+.+ +++||+|+|+++..+..+.++++++.... .+.+.+++..++.+++.+...+....+++
T Consensus 263 ~~~~~~~~~~~~~~~~~g-~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 338 (417)
T 2cfq_A 263 YVTTMGELLNASIMFFAP-LIINRIGGKNALLLAGTIMSVRIIGSSFA---TSALEVVILKTLHMFEVPFLLVGCFKYIT 338 (417)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHTTC---CSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhcHHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766 99999999999888887777765443222 23444445555556666666666788999
Q ss_pred hhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 633 RVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 633 ~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
+..|++ .+|+..|... .....+|++++|.+++
T Consensus 339 ~~~p~~-~~g~~~g~~~-~~~~~lg~~~gp~l~G 370 (417)
T 2cfq_A 339 SQFEVR-FSATIYLVCF-CFFKQLAMIFMSVLAG 370 (417)
T ss_dssp HHSCHH-HHHHHHHHHH-TTTHHHHHHHHTHHHH
T ss_pred HHCCHH-HHHHHHHHHH-HHHHhHHHHHhhhhHH
Confidence 999998 8888777731 3366789999999665
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.92 E-value=9e-24 Score=231.77 Aligned_cols=168 Identities=13% Similarity=0.140 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHHhhhhhccchhHHH-HhcC------ccchhhhHHHHHHHHHHHHHhhhhhhhcccc-CchhHHHHHH
Q 005307 249 SLLLNLVNTFLYMVNTYVIVPTADNYS-LSLG------AAATLCGVIIGSMAVAQVFSSVYFSAWSNRS-YLKPLVFSSI 320 (703)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g------~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~-Grr~~l~~~~ 320 (703)
.++.+++..++..++.....+.++.+. +++| .++.+.|++.+++.++..++.+++|+++||+ |||++++++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~ 92 (524)
T 2xut_A 13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLS 92 (524)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 344556667777777766767777765 4589 9999999999999999999999999999999 9999999887
Q ss_pred HHH-HHHHHHHhhcccc-hhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHH---HHHHHHHHHHHHHHhhh
Q 005307 321 VLL-VGNTLYAMAYDLN-SIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAG---FVSASALGMACGPALAC 393 (703)
Q Consensus 321 ~~~-~~~~~~~~a~~~~-~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~---~~~~~~~G~~lgp~i~~ 393 (703)
+.. ++.++++++ + +++.++++|++.|++.|. +...++++|++|+++|+++.+. ...+.++|.++||.+++
T Consensus 93 ~~~~~~~~~~~~~---~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~ 169 (524)
T 2xut_A 93 LIYCVGHAFLAIF---EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMP 169 (524)
T ss_dssp HHHHHHHHHHHHT---SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHh---cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655 888999998 8 999999999999999877 8899999999999999876665 89999999999999999
Q ss_pred hh--cccccccccccccchhHHHHHHHHHHHHHHHHHH
Q 005307 394 LF--QTNFKIYKLTFNEDTLPGWVMALLWLVYLLWLWI 429 (703)
Q Consensus 394 ~l--~~g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~ 429 (703)
++ ..|| +++|++.+++.++.+++.++
T Consensus 170 ~l~~~~g~----------~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 170 LLLKNFGA----------AVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHTSCH----------HHHHHHHHHHHHHHHHHHHS
T ss_pred HHhccccH----------HHHHHHHHHHHHHHHHHHHH
Confidence 88 5787 99999988877666554433
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.30 E-value=2.1e-11 Score=130.28 Aligned_cols=172 Identities=13% Similarity=-0.022 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHHHHh-cCccchhhhHHHHHHHHHHHHHhhhhhhhcccc--CchhHHHHHHH-HH
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNYSLS-LGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRS--YLKPLVFSSIV-LL 323 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~--Grr~~l~~~~~-~~ 323 (703)
+.++.+.+..++...........+|.+.++ +|.++.+.|++.++..++.+++.++.|+++||+ |||+.+.++.+ ..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 455666666777777777777788888887 899999999999999999999999999999999 99988877644 33
Q ss_pred -HHHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHH-HHHHHHHhhhhh--cc
Q 005307 324 -VGNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASAL-GMACGPALACLF--QT 397 (703)
Q Consensus 324 -~~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~-G~~lgp~i~~~l--~~ 397 (703)
++.+++.+.. ..+.+.+++.-++.|++.+. +...+++.|.+|+++|++++|+.+....+ |..+||.++|++ ..
T Consensus 332 ~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 410 (451)
T 1pw4_A 332 TIATIVYWMNP-AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 410 (451)
T ss_dssp HHHHHHTTSCC-TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhc-ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555554441 13677788888888988666 77789999999999999999999999999 999999999988 56
Q ss_pred cccccccccccchhHHHHHHHHHHHHHHHHHHh
Q 005307 398 NFKIYKLTFNEDTLPGWVMALLWLVYLLWLWIS 430 (703)
Q Consensus 398 g~~~~~~~~~~~~~~f~i~~~~~~~~~i~~~~~ 430 (703)
|+ +.+|++.+++.++..++.++.
T Consensus 411 g~----------~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 411 GW----------DGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp CS----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc----------HHHHHHHHHHHHHHHHHHHHH
Confidence 76 889998888887777665553
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.26 E-value=2.9e-11 Score=127.68 Aligned_cols=153 Identities=15% Similarity=0.073 Sum_probs=120.9
Q ss_pred hhHHHHh-cC---ccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHHhhcccchhHHHHHHH
Q 005307 271 ADNYSLS-LG---AAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYAMAYDLNSIAVLLIGR 345 (703)
Q Consensus 271 l~~~~~~-~g---~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~~a~~~~~~~~l~i~r 345 (703)
+|.+..+ ++ .+....|++.++..++..++.++.|+++||+|||+++..+.+.. ++.++.++. ++.+.+++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 319 (417)
T 2cfq_A 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---TSALEVVILK 319 (417)
T ss_dssp HHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---CSHHHHHHHT
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHH
Confidence 5655544 33 23456688888888899999999999999999999888776544 666666777 7888888888
Q ss_pred HHHhhcCcc--hhhhHHhhccCChhhhhhHHHH-HHHHHHHHHHHHHHhhhhh--cccccccccccccchhHHHHHHHHH
Q 005307 346 LFCGLGSAR--AVNRRYISDCVPLKLRMRASAG-FVSASALGMACGPALACLF--QTNFKIYKLTFNEDTLPGWVMALLW 420 (703)
Q Consensus 346 ~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~-~~~~~~~G~~lgp~i~~~l--~~g~~~~~~~~~~~~~~f~i~~~~~ 420 (703)
++.|++.+. +....+++|.+|++.|+.+.++ ++.+..+|..+||.++|++ ..|+ +..|++.+++.
T Consensus 320 ~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~----------~~~f~~~~~~~ 389 (417)
T 2cfq_A 320 TLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGF----------QGAYLVLGLVA 389 (417)
T ss_dssp THHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCc----------HHHHHHHHHHH
Confidence 888887654 6677899999999999999998 5888899999999999988 5565 78888888888
Q ss_pred HHHHHHHHHhccCCCc
Q 005307 421 LVYLLWLWISFREPPL 436 (703)
Q Consensus 421 ~~~~i~~~~~l~e~~~ 436 (703)
++..++.++..||.++
T Consensus 390 l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 390 LGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHhhhcCCCc
Confidence 7777666666666544
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.19 E-value=1.6e-10 Score=122.90 Aligned_cols=161 Identities=11% Similarity=0.019 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhccchhHH-HHhc-CccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-H
Q 005307 248 TSLLLNLVNTFLYMVNTYVIVPTADNY-SLSL-GAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-V 324 (703)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~-g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~ 324 (703)
+.++...+..++...........+|.+ .++. |.+..+.+++.++..++.+++.++.|+++||+|||+++.++.+.. +
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~ 337 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMA 337 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 344555555565566566666777877 7774 999999999999999999999999999999999999988886655 7
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHhhcCcc--hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh--ccc-c
Q 005307 325 GNTLYAMAYDLNSIAVLLIGRLFCGLGSAR--AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF--QTN-F 399 (703)
Q Consensus 325 ~~~~~~~a~~~~~~~~l~i~r~l~Gi~~g~--~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l--~~g-~ 399 (703)
+.++..+. ++.+.++.. ++.|++.+. +...+++.|.+|++ ++.+.++.. ...+|..++|.+.|++ ..| +
T Consensus 338 ~~~~~~~~---~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~ 411 (438)
T 3o7q_A 338 LCLISAFA---GGHVGLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNI 411 (438)
T ss_dssp HHHHHHHC---CHHHHHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHc---CCcHHHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcch
Confidence 77777777 776655544 777887665 88888989999866 888888777 5669999999999998 556 5
Q ss_pred cccccccccchhHHHHHHHHHHHHH
Q 005307 400 KIYKLTFNEDTLPGWVMALLWLVYL 424 (703)
Q Consensus 400 ~~~~~~~~~~~~~f~i~~~~~~~~~ 424 (703)
+..|++.+++.++.+
T Consensus 412 ----------~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 412 ----------PTAELIPALCFAVIF 426 (438)
T ss_dssp ----------GGGGHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHH
Confidence 778777655544433
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.11 E-value=6.5e-10 Score=120.19 Aligned_cols=184 Identities=16% Similarity=0.145 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHhhhhhccchhHHHHhcCccchhhhHHHHHHHHHHHHHhhhhhhhccccCchhHHHHHHHHH-HHHHHHH
Q 005307 252 LNLVNTFLYMVNTYVIVPTADNYSLSLGAAATLCGVIIGSMAVAQVFSSVYFSAWSNRSYLKPLVFSSIVLL-VGNTLYA 330 (703)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~-~~~~~~~ 330 (703)
......+....+...+....|.+.+..+.+............+...++.++.+.+.||+|||+.++.+.... ++.+..+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 281 GVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHH
Confidence 333344444445555555667777788888777777888888999999999999999999999988775533 4444443
Q ss_pred hhc--ccchhHH-HHHHHHHHhhcCcc-hhhhHHhhccCChhhhhhHHHHHHHHHHHHHHHHHHhhhhh-cccccccccc
Q 005307 331 MAY--DLNSIAV-LLIGRLFCGLGSAR-AVNRRYISDCVPLKLRMRASAGFVSASALGMACGPALACLF-QTNFKIYKLT 405 (703)
Q Consensus 331 ~a~--~~~~~~~-l~i~r~l~Gi~~g~-~~~~~~i~~~~~~~~R~~~~~~~~~~~~~G~~lgp~i~~~l-~~g~~~~~~~ 405 (703)
... ..++... +.+.-+..+++.+. ++...+.+|++|.+.|+.++|+......+|..+++.+...+ ...|.. .
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~---~ 437 (491)
T 4gc0_A 361 TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV---A 437 (491)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH---H
T ss_pred HHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h
Confidence 321 1122222 22233334455555 78889999999999999999999998888888887766554 111100 0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHhccCCCccc
Q 005307 406 FNEDTLPGWVMALLWLVYLLWLWISFREPPLET 438 (703)
Q Consensus 406 ~~~~~~~f~i~~~~~~~~~i~~~~~l~e~~~~~ 438 (703)
..++.++|++.++++++..++.++++||++...
T Consensus 438 ~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~t 470 (491)
T 4gc0_A 438 HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKT 470 (491)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCC
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCC
Confidence 001257788888899999888889999997643
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.09 E-value=9.1e-10 Score=119.03 Aligned_cols=147 Identities=11% Similarity=0.117 Sum_probs=123.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHhhhh-----ccccchhHHHHHHhhhhhhhhHHHHHHhhhhhh-hhhHHHHHHH
Q 005307 513 PSVKVQLFVYFMLKYAMEILLAESSVITEHY-----FIWSTSRVAIFLACLGLTVLPVNIIVGNYISNI-FEERQVLLAS 586 (703)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r-~g~r~~~~~~ 586 (703)
+.++...+..++..++++.....++.|+.+. +|++..+.|++.++..++..++.++.| +++|| +|||+++..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g-~l~dr~~g~r~~~~~~ 91 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGG-FVADRIIGARPAVFWG 91 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTSCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHhccccchHHHHHH
Confidence 3566667777778888888888899999888 999999999999999999999999888 99999 8999999999
Q ss_pred HHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCc--ccccchhhhHHhhhhhhhhhccce
Q 005307 587 EIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLS--RGTYNGGLLSTEAGTLARVIADGT 664 (703)
Q Consensus 587 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~g~~~~~~~~~~g~~~gp~~ 664 (703)
.++.+++.++.... .+.+.+++..++.|++.+...+...+++++.+|++ . |+.+.+.. .....+|..++|.+
T Consensus 92 ~~~~~~~~~~~~~~---~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~--~~~~~~g~~~~~~~ 165 (491)
T 4aps_A 92 GVLIMLGHIVLALP---FGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEH-DRRRDAGFSIF--VFGINLGAFIAPLI 165 (491)
T ss_dssp HHHHHHHHHHHHSC---CSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSC-TTHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcc-cccceeeehHH--HHHHHHHHHHHHHH
Confidence 98888886655433 56677788888889999999999999999999988 6 66566665 44778999999996
Q ss_pred ee
Q 005307 665 IT 666 (703)
Q Consensus 665 ~~ 666 (703)
++
T Consensus 166 ~~ 167 (491)
T 4aps_A 166 VG 167 (491)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.03 E-value=1.9e-09 Score=117.62 Aligned_cols=149 Identities=8% Similarity=0.090 Sum_probs=121.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHhhhhHHhhhhcc------ccchhHHHHHHhhhhhhhhHHHHHHhhhhhhh-hhHHHHH
Q 005307 512 TPSVKVQLFVYFMLKYAMEILLAESSVITEHYFI------WSTSRVAIFLACLGLTVLPVNIIVGNYISNIF-EERQVLL 584 (703)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~-g~r~~~~ 584 (703)
.+.++.+.+..++..++.+.....++.|+.+.+| +++.++|++.++..++..++.++.| +++||+ |+|+++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G-~l~dr~~g~r~~~~ 89 (524)
T 2xut_A 11 PRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGG-WIADRFFGKYNTIL 89 (524)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHH-HHHTTSSCSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcchHHHH
Confidence 4566777778888888888888889999988889 9999999999999999999888877 999999 9999999
Q ss_pred HHHHHHHHHHhhccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchh---hhHHhhhhhhhhhc
Q 005307 585 ASEIIVCIGILLSFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGG---LLSTEAGTLARVIA 661 (703)
Q Consensus 585 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~---~~~~~~~~~g~~~g 661 (703)
++.++.+++.++.... +.+.+.+++..++.|++.+...+...+++.+.+|++ .||+..+. . .....+|.+++
T Consensus 90 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~~~--~~~~~~g~~~g 164 (524)
T 2xut_A 90 WLSLIYCVGHAFLAIF--EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQS-NKSLAQKAFDMF--YFTINFGSFFA 164 (524)
T ss_dssp HHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTT-TTTHHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCcc-chHHHHHHHHHH--HHHHHHHHHHH
Confidence 9988888876554433 125677777888889999999999999999999998 78765554 5 34677899999
Q ss_pred cceee
Q 005307 662 DGTIT 666 (703)
Q Consensus 662 p~~~~ 666 (703)
|.+++
T Consensus 165 ~~~~~ 169 (524)
T 2xut_A 165 SLSMP 169 (524)
T ss_dssp HHTST
T ss_pred HHHHH
Confidence 98655
No 14
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.87 E-value=4.5e-09 Score=109.15 Aligned_cols=142 Identities=13% Similarity=0.071 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhhhccccchhHHHHHHhhhhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHhh
Q 005307 517 VQLFVYFMLKYAMEILLAESSVITEHYFIWSTSRVAIFLACLGLTVLPVNIIVGNYISNIFEERQVLLASEIIVCIGILL 596 (703)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~~~~l~~r~g~r~~~~~~~~~~~i~~~~ 596 (703)
.+.+..++..+....+...+|.+. +.+|.++.+.|+..+...++..++..+.| +++||+|||+.+..+..+.+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~g~~~~~~~~~~~~~~~~~g-~l~dr~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMA-RDLNVREGAVQSVMGAYLLTYGVSQLFYG-PISDRVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TTSSSTTHHHHHHHHHHHHHHHHHHTTHH-HHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHH-HHcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCchhHHHHHHHHHHHHHH
Confidence 344555556666666666666654 55899999999999999999999998888 9999999999999998888888665
Q ss_pred ccccccccchhHHHHHHHHHHhhhhhhhHHHHHHHHhhccCCCcccccchhhhHHhhhhhhhhhccceee
Q 005307 597 SFHILVPYSVPQYVGSALITFVAAEVLEGVNLSLLSRVMSSRLSRGTYNGGLLSTEAGTLARVIADGTIT 666 (703)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~g~~~gp~~~~ 666 (703)
.... .+.+.+++..++.|++.+...+...+++.+..|++ +|+++++.. .....+|..++|.+++
T Consensus 82 ~~~~---~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~g~~~~~~~~~ 145 (375)
T 2gfp_A 82 AVTT---SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERT-QLRHANSLL--NMGILVSPLLAPLIGG 145 (375)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCCSHHHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHh---ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHH-HHHHHHHHH--HHHHHHHHHhhHHHHH
Confidence 4433 45677778888889999999999999999999988 899999988 4477899999999655
No 15
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=88.26 E-value=2.5 Score=32.00 Aligned_cols=66 Identities=11% Similarity=0.173 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcc
Q 005307 69 QQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFDKR 134 (703)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK~ 134 (703)
++.++.+.+..+..+....+.+..-.++.+|++.+..+..|+..+..=..-+.++|-+.++|..-.
T Consensus 24 ~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~~~~ 89 (93)
T 3sjb_C 24 KYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKLEHH 89 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555666667777666666555677889999999999999999999999999999999997644
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.48 E-value=3.7 Score=41.68 Aligned_cols=61 Identities=21% Similarity=0.128 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 005307 66 LLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKF 131 (703)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~ 131 (703)
|.+-..||++++..|+.+++... ..++.|+..+.++..++++|+.=+.+....++-=+.++
T Consensus 108 ynE~S~ELRRrIqyLKekVdnQl-----snIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~ 168 (562)
T 3ghg_A 108 YNRVSEDLRSRIEVLKRKVIEKV-----QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRA 168 (562)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 44444588888888888877643 35677888888889999999888888776665544443
No 17
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=82.87 E-value=18 Score=29.68 Aligned_cols=81 Identities=10% Similarity=0.187 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005307 49 KDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKIL 128 (703)
Q Consensus 49 ~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~Kil 128 (703)
..|...-..+|+.-.+=...+..++..-++.|++.+..-..++.....+.+.+.+.....+|..++.|..--.-...||=
T Consensus 9 R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiW 88 (141)
T 3okq_A 9 RMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTW 88 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHH
Confidence 34555555555555555677888888889999988887666778888999999999999999999999988888877774
Q ss_pred h
Q 005307 129 K 129 (703)
Q Consensus 129 K 129 (703)
-
T Consensus 89 E 89 (141)
T 3okq_A 89 E 89 (141)
T ss_dssp H
T ss_pred H
Confidence 3
No 18
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=76.30 E-value=16 Score=35.52 Aligned_cols=54 Identities=24% Similarity=0.123 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHh
Q 005307 57 DQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLF 115 (703)
Q Consensus 57 ~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 115 (703)
.+.+.-+.=|.+-..|+++|+..|+..++.... +++.|+..+.+...++++|+.
T Consensus 102 ~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-----~ir~Lq~~l~~q~~kiqRLE~ 155 (390)
T 1deq_A 102 AKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-----RINLLQKNVRDQLVDMKRLEV 155 (390)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555666666777777777776655322 455555666666666666554
No 19
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=76.06 E-value=24 Score=27.07 Aligned_cols=67 Identities=18% Similarity=0.298 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005307 53 RMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKIL 128 (703)
Q Consensus 53 ~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~Kil 128 (703)
..|+..+..++.-|.....++...+..++.++.+.+. ++...+.+ |.+|.+.|-=.++-....||+|
T Consensus 22 ~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~--------e~~~ql~E-Yq~LlnvKl~Le~EIatYrkLL 88 (95)
T 3mov_A 22 RACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRD--------QMQQQLND-YEQLLDVKLALDMEISAYRKLL 88 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888889888888877533 33333333 4567777666666666777776
No 20
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=73.68 E-value=7.2 Score=28.97 Aligned_cols=16 Identities=38% Similarity=0.623 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 005307 56 DDQIEKIVLFLLEQQG 71 (703)
Q Consensus 56 ~~e~~kv~~f~~~~~~ 71 (703)
+.|++||.+||.+..+
T Consensus 85 n~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 85 NEEIKKIASFYLEECR 100 (106)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4799999999976543
No 21
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=66.56 E-value=15 Score=20.60 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 54 MLDDQIEKIVLFLLEQQGALASRLSDLGEHHD 85 (703)
Q Consensus 54 ~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~ 85 (703)
.|++|+.|.|.- ..++.+|+.+||+.++
T Consensus 3 rlee~~r~l~~i----vq~lq~r~drle~tvq 30 (32)
T 2akf_A 3 RLEEDVRNLNAI----VQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 467788887654 4567777878877654
No 22
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=64.86 E-value=57 Score=26.76 Aligned_cols=68 Identities=16% Similarity=0.172 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005307 52 ARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKIL 128 (703)
Q Consensus 52 ~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~Kil 128 (703)
...|+..+...+.-|....+++...+..++.++...+. ++.+.+.+ |.+|.++|-=.++-...-||+|
T Consensus 61 ~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~--------em~~ql~E-Yq~Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 61 KASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRC--------EMEQQNQE-YKILLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhH
Confidence 44566666666777777777777777777777666433 23233333 4566666655555556666665
No 23
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=64.48 E-value=34 Score=24.55 Aligned_cols=40 Identities=33% Similarity=0.406 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005307 48 LKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDAL 87 (703)
Q Consensus 48 ~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~ 87 (703)
..+|.+.+..-+.|+.+|-++=..-++.|+..++.+++.+
T Consensus 18 nRe~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~l 57 (73)
T 3pp5_A 18 QREFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTIL 57 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999977777777777777766553
No 24
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=64.40 E-value=46 Score=33.24 Aligned_cols=73 Identities=12% Similarity=0.072 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 005307 52 ARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILK 129 (703)
Q Consensus 52 ~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilK 129 (703)
.+.-..+.+.-++=|.+-..|+++|++.|+..++... .+++-|+..+.+...++++|+.=+..+..-++.=++
T Consensus 95 lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi-----~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC~ 167 (491)
T 1m1j_A 95 LKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV-----NRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSCA 167 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTBS
T ss_pred HHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 3333445566666778888899999999988887633 357788889999999999999877776654444333
No 25
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=63.80 E-value=4.5 Score=30.67 Aligned_cols=61 Identities=11% Similarity=0.146 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 005307 70 QGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKK 130 (703)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK 130 (703)
+.++...+..+..+....+.+..-.++-+|++.+..+..|+..+..=..-+.+.|-+++++
T Consensus 32 ~~~lk~E~~~lk~E~~stSaQDEFAKWAKL~Rk~DKl~~ele~l~~~L~s~ks~fd~~l~~ 92 (94)
T 3vlc_E 32 YLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHK 92 (94)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHTTTHHHHTTTTHHHHTTCC--
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555556666666665555566788888888888888888887777777777776665
No 26
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=62.29 E-value=39 Score=24.41 Aligned_cols=40 Identities=30% Similarity=0.407 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005307 48 LKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDAL 87 (703)
Q Consensus 48 ~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~ 87 (703)
..+|.+.++.-+.|+.+|-++=...++.|+..++.+++.+
T Consensus 18 nRe~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~L 57 (75)
T 3p8c_E 18 NREYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTAL 57 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999877777777777777766553
No 27
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=61.73 E-value=65 Score=26.33 Aligned_cols=69 Identities=16% Similarity=0.169 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 005307 51 FARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKIL 128 (703)
Q Consensus 51 f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~Kil 128 (703)
-...|+..+...+.-|....+++...+..++.++...+. ++.+.+.+ |.+|.++|-=.++-...-||+|
T Consensus 58 ~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~--------e~~~ql~E-Yq~LlnvKl~Ld~EIatYRkLL 126 (129)
T 3tnu_B 58 QCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQ--------DMARLLRE-YQELMNTKLALDVEIATYRKLL 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhH
Confidence 344566666666666777777777777777777665432 22233332 4455555555555555555544
No 28
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=60.97 E-value=67 Score=26.66 Aligned_cols=83 Identities=16% Similarity=0.144 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHH----HHH-HHHHHHHHHHHHHHhHHHHH
Q 005307 46 NVLKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRIS----ELQ-EAYRAVGHDLLRLLFFVEMN 120 (703)
Q Consensus 46 ~~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~l~~l~~~~~ln 120 (703)
..+++.++.|++--++.+.|+.+-.+=+.+|-....+-.. .+...+++ +++ +.+.++..-+.++++.-.
T Consensus 49 ~VQeevl~~l~~v~~~~~~~~~~i~~Y~~~Ra~~v~K~~k----~p~v~Dy~~~v~e~Dek~~~~lr~~~~elRn~Y~-- 122 (140)
T 1avo_B 49 AVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVTKAAK----QPHVGDYRQLVHELDEAEYRDIRLMVMEIRNAYA-- 122 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CTTBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4467888999988888888987766666677665554222 12222332 222 234445555555554322
Q ss_pred HHHHHHHHhhhhccc
Q 005307 121 ATGLRKILKKFDKRF 135 (703)
Q Consensus 121 ~~~~~KilKK~dK~~ 135 (703)
+-.--|.|-+||..
T Consensus 123 -~l~D~i~KN~eKi~ 136 (140)
T 1avo_B 123 -VLYDIILKNFEKLK 136 (140)
T ss_dssp -HHHHHHHHTHHHHH
T ss_pred -HHHHHHHHhHHHhc
Confidence 22334556666653
No 29
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=60.93 E-value=50 Score=28.71 Aligned_cols=56 Identities=21% Similarity=0.222 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCchhHHHHHHHHHHHHHHHHH
Q 005307 57 DQIEKIVLFLLEQQGALASRLSDLGEHHDALS--QHQDGSRISELQEAYRAVGHDLLR 112 (703)
Q Consensus 57 ~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~ 112 (703)
.++++|.+=|..+..++.+.+...+.+++.+. ++.|....+.+.+.+.++..++..
T Consensus 74 ~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 74 ATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455556677777777777777753 445666666666666666665554
No 30
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=58.81 E-value=56 Score=32.09 Aligned_cols=69 Identities=17% Similarity=0.092 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcc
Q 005307 59 IEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFDKR 134 (703)
Q Consensus 59 ~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK~ 134 (703)
++.+.+-|..-.+++.++++.+|+++.. +.+ .+..+.+.++.+++..+++...-|...+.++.+.+...
T Consensus 162 ld~ivd~~~~~l~~l~~~i~~lE~~l~~---~~~----~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~~~~~~ 230 (339)
T 4ev6_A 162 LNEITRSYSRILMNLEDELEELEDKLLA---GYD----REVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLPI 230 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSTT---CCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhh----hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhccccc
Confidence 4556666777788888888888876543 111 23446677788899999999998888888887665443
No 31
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=58.31 E-value=73 Score=30.17 Aligned_cols=68 Identities=18% Similarity=0.105 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhc
Q 005307 59 IEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFDK 133 (703)
Q Consensus 59 ~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK 133 (703)
++.|.+-|..-.+++.++++.+|+++-. ..+ .+....+.++.+++..|++...=|...+.++.+...+
T Consensus 162 ld~ivd~y~~~l~~i~~~id~lE~~l~~---~~~----~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~ 229 (280)
T 4egw_A 162 LNEITRSYSRILMNLEDELEELEDKLLA---GYD----REVMEKILGLRKTLVYFHKSLIANRDVLVLLKRKYLP 229 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTT---CCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCc----hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCcc
Confidence 4557777888888899999999887643 122 2334567788899999999999999999998765443
No 32
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=54.06 E-value=65 Score=23.98 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 005307 52 ARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILK 129 (703)
Q Consensus 52 ~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilK 129 (703)
...|+..+...+.-|....+++...+..++.++...+. ++.+.+. =|.+|.+.|-=.++-...-||+|-
T Consensus 10 ~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~--------e~~~q~~-EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 10 NESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKE--------EMARHLR-EYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHc
Confidence 35678888888888988899999999999988877533 2323322 356777777777777788888774
No 33
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=53.02 E-value=59 Score=25.61 Aligned_cols=48 Identities=19% Similarity=0.256 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHH
Q 005307 70 QGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFV 117 (703)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 117 (703)
.+.+.+|+..++.++.....+.|.+.+..+.+....+..++..|+.=+
T Consensus 12 iq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q 59 (123)
T 2lf0_A 12 IKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVH 59 (123)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888777888888888888888888888887643
No 34
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=50.87 E-value=69 Score=23.28 Aligned_cols=57 Identities=5% Similarity=0.063 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHH
Q 005307 53 RMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLL 114 (703)
Q Consensus 53 ~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 114 (703)
.....--+..+..|..|..++......-.+.+...+ .....+++.+..+..||..|+
T Consensus 20 ~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k-----~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 20 SVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAK-----QESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhc
Confidence 333444445566777777777665554444433321 123455556666666665554
No 35
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=49.60 E-value=44 Score=20.89 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 52 ARMLDDQIEKIVLFLLEQQGALASRLSDLGEH 83 (703)
Q Consensus 52 ~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~ 83 (703)
...+|+|++|++ +|..++..|+..|++.
T Consensus 11 I~kVdrEI~Kte----~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 11 MDRVDREITMVE----QQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 456788888864 5677777777777664
No 36
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=49.37 E-value=55 Score=24.95 Aligned_cols=32 Identities=25% Similarity=0.264 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 49 KDFARMLDDQIEKIVLFLLEQQGALASRLSDL 80 (703)
Q Consensus 49 ~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~ 80 (703)
.+||..+-.++++=-.-|+...+++++.+..+
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~ 38 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENHLATQ 38 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46776666666666666666666666555543
No 37
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=48.29 E-value=62 Score=27.33 Aligned_cols=59 Identities=10% Similarity=0.170 Sum_probs=25.5
Q ss_pred hccChhhHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 005307 19 YYINYKLLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIVLFLLE-QQGALASRLSDLGEHHDA 86 (703)
Q Consensus 19 ~yi~Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~kv~~f~~~-~~~~~~~~~~~~~~~~~~ 86 (703)
.|-+|+.-|+.|+...+. .....+| +.+..|++..-.|=.. -.+|..++++.+..+++.
T Consensus 25 eyk~yk~A~~~i~~D~ea--------q~li~eF-~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~~l~~ 84 (151)
T 2pih_A 25 EVDFFKRAEAQINENDKV--------STIVNQI-KALQKQAVNLKHYEKHEALKQVEAKIDALQEELEE 84 (151)
T ss_dssp HHHHHHHHHHHHHHCHHH--------HHHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHH--------HHHHHHH-HHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHc
Confidence 355555555555553321 1112333 3334444444332211 244555555555555544
No 38
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=47.83 E-value=90 Score=23.77 Aligned_cols=26 Identities=8% Similarity=0.118 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005307 63 VLFLLEQQGALASRLSDLGEHHDALS 88 (703)
Q Consensus 63 ~~f~~~~~~~~~~~~~~~~~~~~~~~ 88 (703)
..||.++.+++++|+..++.+++++.
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE 32 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELE 32 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999998888753
No 39
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=47.35 E-value=89 Score=30.96 Aligned_cols=65 Identities=12% Similarity=0.072 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 005307 59 IEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKK 130 (703)
Q Consensus 59 ~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK 130 (703)
++.+.+-|..-.+++.++++.+|+++.. +.+ .+..+.+.++.+++..++++..-|...+.++.+.
T Consensus 186 ld~ivd~y~~~l~~l~~~id~lE~~v~~---~~~----~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~ 250 (363)
T 2iub_A 186 IDALVDDYFVLLEKIDDEIDVLEEEVLE---RPE----KETVQRTHQLKRNLVELRKTIWPLREVLSSLYRD 250 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS---SCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556667777888888888877533 111 2334677888999999999999999999998763
No 40
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=46.33 E-value=60 Score=28.12 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=9.3
Q ss_pred HHHhHHHHHHHHHHH
Q 005307 112 RLLFFVEMNATGLRK 126 (703)
Q Consensus 112 ~l~~~~~ln~~~~~K 126 (703)
.|+.|++.|+--+-+
T Consensus 67 ~l~~y~e~~r~elf~ 81 (171)
T 2p2u_A 67 GVATFATLNKTEMFK 81 (171)
T ss_dssp HHHHHHHHTHHHHCC
T ss_pred HHHHHHHHhHHHhcC
Confidence 355677777766633
No 41
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=46.02 E-value=51 Score=31.02 Aligned_cols=65 Identities=11% Similarity=-0.007 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 005307 61 KIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFD 132 (703)
Q Consensus 61 kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~d 132 (703)
.|.+-|..-.+++.++++.+|+++-.- . .....+.+.++.+++..|+++..=|...+.++.+...
T Consensus 179 ~ivd~y~~~l~~i~~~id~lE~~v~~~---~----~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~ 243 (269)
T 2bbh_A 179 ALVDDYFVLLEKIDDEIDVLEEEVLER---P----EKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDVP 243 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---C----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 355556666777777777777764321 1 1233456788899999999999999999999987643
No 42
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=43.76 E-value=93 Score=29.02 Aligned_cols=65 Identities=9% Similarity=0.043 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 005307 59 IEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKF 131 (703)
Q Consensus 59 ~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~ 131 (703)
++.|.+-|..-.+++.++++.+|+++..- .+ .....+.++.+++..|+++..=|...+.++.+..
T Consensus 153 ld~ivd~y~~~l~~l~~~id~lE~~l~~~-~~-------~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 217 (264)
T 3nvo_A 153 CDALTDHASEFIEELHDKIIDLEDNLLDQ-QI-------PPRGFLALLRKQLIVMRRYMAPQRDVYARLASER 217 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-----CC-------CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Cc-------hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 34466667777888888888888876432 11 1125567788899999999999999999988754
No 43
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=43.36 E-value=1e+02 Score=23.06 Aligned_cols=67 Identities=13% Similarity=0.229 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 005307 54 MLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILK 129 (703)
Q Consensus 54 ~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilK 129 (703)
.|+..+...+.-|....+++...+..++.++.+++. ++.+.+. =|.+|.++|-=.++-....||+|-
T Consensus 14 ~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~--------e~~~ql~-EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 14 AKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRA--------RMQQQLD-EYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHH-HHHHHHHHHHhhHHHHHHHHHHHc
Confidence 356666667777777788888888888888776533 2223322 356777777777777778888774
No 44
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=43.01 E-value=1e+02 Score=23.00 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005307 58 QIEKIVLFLLEQQGALASRLSDLGEHHDALS 88 (703)
Q Consensus 58 e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~ 88 (703)
|++.+-.-+....+++...+..|+..+..+.
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~ 43 (93)
T 4ioe_A 13 ELERIAGNFKNAAGEAQSQINRLEGDINSLE 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444555666666666666666653
No 45
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=42.39 E-value=1.1e+02 Score=23.17 Aligned_cols=21 Identities=10% Similarity=0.069 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 005307 66 LLEQQGALASRLSDLGEHHDA 86 (703)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~ 86 (703)
+....+++...+..|...++.
T Consensus 20 ~~~~~~~i~~~l~~L~~~~~~ 40 (98)
T 3gwk_C 20 YTAGSQQVTEVLNLLTQEQAV 40 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555554444
No 46
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=42.39 E-value=86 Score=21.96 Aligned_cols=47 Identities=11% Similarity=0.133 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHh
Q 005307 69 QQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLF 115 (703)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 115 (703)
++.++...+..+..+....+.+..-.++.+|++.+..+..|+..+..
T Consensus 7 ~~~~l~~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~ 53 (65)
T 3sja_C 7 KYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKD 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666655545556677777877777777776653
No 47
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=41.17 E-value=1.1e+02 Score=25.38 Aligned_cols=60 Identities=3% Similarity=0.043 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hccC--CCchhHHHHHHHHHHHHHHHHH
Q 005307 53 RMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDA-----LSQH--QDGSRISELQEAYRAVGHDLLR 112 (703)
Q Consensus 53 ~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~l~~ 112 (703)
..+-+|++||..=|.++.+|+..++-.+-+.... +..+ ......+.+-+....+++-|..
T Consensus 4 ~~lL~efDkv~rdy~eH~~eI~~KLv~Im~~r~~~~l~~Wd~k~pvpS~~m~tl~Ke~~kLH~~Ls~ 70 (141)
T 3n1e_A 4 WSMLRHFDHITKDYHDHIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSPCFRNICKQMTKMHEAIFD 70 (141)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSSSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999998776554332 1111 1234456777777777765553
No 48
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=40.64 E-value=2e+02 Score=26.78 Aligned_cols=13 Identities=8% Similarity=0.215 Sum_probs=6.8
Q ss_pred cChhhHHHHHHhh
Q 005307 21 INYKLLKKKVNRY 33 (703)
Q Consensus 21 i~Y~~lK~~i~~~ 33 (703)
-.|+.|-+.++..
T Consensus 18 ~g~~~l~~~~~~g 30 (276)
T 2v0o_A 18 SGFDVLYHNMKHG 30 (276)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 3455555555553
No 49
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=40.62 E-value=2.7e+02 Score=27.35 Aligned_cols=19 Identities=16% Similarity=0.487 Sum_probs=15.0
Q ss_pred hccChhhHHHHHHhhhhhh
Q 005307 19 YYINYKLLKKKVNRYTQQI 37 (703)
Q Consensus 19 ~yi~Y~~lK~~i~~~~~~~ 37 (703)
.|+|++.+++.+.++....
T Consensus 23 ~~~~l~~~~~r~~el~~~~ 41 (365)
T 1gqe_A 23 GYLDYDAKKERLEEVNAEL 41 (365)
T ss_dssp HHTTHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHh
Confidence 4888999988888887644
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.32 E-value=2.6e+02 Score=29.71 Aligned_cols=37 Identities=8% Similarity=0.047 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhccc
Q 005307 99 LQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFDKRF 135 (703)
Q Consensus 99 ~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK~~ 135 (703)
+++.+.+....+..+++=..-...=+.+..+|.++..
T Consensus 549 le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 549 LEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3333333333444444333333344555555555543
No 51
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=39.90 E-value=1.5e+02 Score=30.37 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 53 RMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDA 86 (703)
Q Consensus 53 ~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (703)
..+..||++--.+.+++...-..+++.|+..++.
T Consensus 109 nE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLed 142 (562)
T 3ghg_A 109 NRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRA 142 (562)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555445555544444555555555444
No 52
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=39.89 E-value=67 Score=22.79 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=15.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHH
Q 005307 91 QDGSRISELQEAYRAVGHDLLRLL 114 (703)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~l~ 114 (703)
..-+....|.+.+.|+..++..++
T Consensus 43 ~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 43 GRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHh
Confidence 334445667777777777766654
No 53
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=39.53 E-value=1.1e+02 Score=28.40 Aligned_cols=31 Identities=10% Similarity=0.290 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005307 57 DQIEKIVLFLLEQQGALASRLSDLGEHHDAL 87 (703)
Q Consensus 57 ~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~ 87 (703)
.-++..+.+...+..++..++..++.++.++
T Consensus 205 ~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~ 235 (268)
T 2yo3_A 205 RSVEEANTYTDQKMGEMNSKIKGVENKMKQI 235 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3456678888888888888888888876664
No 54
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=39.23 E-value=82 Score=20.84 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHH
Q 005307 76 RLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLL 114 (703)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 114 (703)
....++.-+.+.+....-+....|.+.+.|+..++..+.
T Consensus 10 Q~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 10 QIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444555556777788888887777665
No 55
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=38.81 E-value=1.2e+02 Score=28.35 Aligned_cols=65 Identities=11% Similarity=-0.001 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 005307 60 EKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKKFD 132 (703)
Q Consensus 60 ~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~d 132 (703)
+.+.+-|..-.+++.++++.+|+++-.- .+ ...+.+.++.+++..|+++..=|...+.++.+...
T Consensus 179 d~ivd~y~~~l~~i~~~id~lE~~l~~~---~~-----~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~ 243 (266)
T 2hn1_A 179 DAVVDSYFEALLKISDEIEVLEDEVVSG---DS-----TLIGKIHSLKREILAFRNAVWPLRDVLSFFTRVEH 243 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT---TC-----CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC---cH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3466667777888888888888886431 11 12245777888999999999999999999987643
No 56
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=38.31 E-value=1.4e+02 Score=30.64 Aligned_cols=29 Identities=7% Similarity=0.171 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 58 QIEKIVLFLLEQQGALASRLSDLGEHHDA 86 (703)
Q Consensus 58 e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (703)
|.++++.-..++..|.++.+..++++...
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAAT 422 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhh
Confidence 45555556667777777777777666554
No 57
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=37.77 E-value=3.4e+02 Score=27.56 Aligned_cols=81 Identities=9% Similarity=0.151 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhccC--CCchhHHHHHHHHH-----HHHHHHHHHHhHHH
Q 005307 49 KDFARMLDDQIEKIVLFLLEQQGA---LASRLSDLGEHHDALSQH--QDGSRISELQEAYR-----AVGHDLLRLLFFVE 118 (703)
Q Consensus 49 ~~f~~~l~~e~~kv~~f~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~ 118 (703)
+.-.+.+..++++|..|-+.+.+. -...++.|++.++.+..- ...++..+|.+++. +-..|- .+-++-.
T Consensus 117 ~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~-~mi~~yr 195 (526)
T 3iyk_A 117 DKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAET-VMVKEYR 195 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHH-HHHHHHH
Confidence 445566788999999998855432 224566677776654320 11223333444331 112222 3444445
Q ss_pred HHHHHHHHHHhh
Q 005307 119 MNATGLRKILKK 130 (703)
Q Consensus 119 ln~~~~~KilKK 130 (703)
=|+-++++-++.
T Consensus 196 ~k~~aL~~aIe~ 207 (526)
T 3iyk_A 196 DKIDALKNAIEV 207 (526)
T ss_pred HHHHHHHHHHHH
Confidence 577777777664
No 58
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=37.70 E-value=60 Score=21.19 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 49 KDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDA 86 (703)
Q Consensus 49 ~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (703)
..|.+.|-.+++ .-|.....++..|+.....++++
T Consensus 8 t~~vq~LL~qmq---~kFq~mS~~I~~riDdM~~RIDd 42 (48)
T 3ci9_A 8 TSVVQTLLQQMQ---DKFQTISDQIIGRIDDMSSRIDD 42 (48)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHH
Confidence 445444444333 33444455555555554444444
No 59
>1z8u_A Alpha-hemoglobin stabilizing protein; alpha haemoglobin, AHSP, oxidation, interaction, electron transport; HET: HEM; 2.40A {Homo sapiens} SCOP: a.7.11.1 PDB: 1y01_A* 1w0b_A 3ovu_A* 1w09_A 1w0a_A 3ia3_A* 1xzy_A
Probab=35.58 E-value=22 Score=26.35 Aligned_cols=51 Identities=16% Similarity=0.355 Sum_probs=30.7
Q ss_pred cchhhhhccChhhHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 13 IQEWQGYYINYKLLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIVLFLLEQQGALASR 76 (703)
Q Consensus 13 ~~ew~~~yi~Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~ 76 (703)
+..|-..||+|=+ ++...+ . +..++=.+.|..|++-+..=|..|...+...
T Consensus 41 V~DWvnfYinyy~-----~~~~Ge-----q---qEqdrAlqel~qeL~tl~~pFL~KYR~fLks 91 (102)
T 1z8u_A 41 VEDWMNFYINYYR-----QQVTGE-----P---QERDKALQELRQELNTLANPFLAKYRDFLKS 91 (102)
T ss_dssp HHHHHHHHHHHHT-----TTCCSC-----H---HHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHH-----HHhccc-----H---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 4579999999965 222211 1 1123345667778877877777776655443
No 60
>3b2e_E Golgi to ER traffic protein 1; protein-protein interaction, receptor complex, hydrolase, TR protein, ADP binding, coild-coil; HET: ADP; 3.00A {Saccharomyces cerevisiae} PDB: 3zs8_C
Probab=41.67 E-value=7.9 Score=28.82 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 005307 71 GALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKK 130 (703)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK 130 (703)
.++...+..+..+....+.+..-..+.+|++.+..+..|+..+.+=..-..+.|.+.++|
T Consensus 23 ~~Lk~Ei~~lk~E~~stSaQDEFAKWAKL~Rk~dKl~~ele~~~k~l~~~k~~f~~~~~~ 82 (84)
T 3b2e_E 23 LAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHK 82 (84)
Confidence 333444444444444333333334456677777777777777666666666666666554
No 61
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=33.85 E-value=1.5e+02 Score=22.27 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=6.3
Q ss_pred cChhhHHHHHHhh
Q 005307 21 INYKLLKKKVNRY 33 (703)
Q Consensus 21 i~Y~~lK~~i~~~ 33 (703)
|||+.|...-+++
T Consensus 9 v~~~~l~~~A~~~ 21 (99)
T 3zbh_A 9 LTPEELRGVARQY 21 (99)
T ss_dssp CCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 4555554444443
No 62
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=33.68 E-value=1.7e+02 Score=23.23 Aligned_cols=33 Identities=9% Similarity=0.089 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 005307 100 QEAYRAVGHDLLRLLFFVEMNATGLRKILKKFD 132 (703)
Q Consensus 100 ~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK~d 132 (703)
.+++..+.+++..+++++--|+.|+==++-+..
T Consensus 59 ~~aL~~L~~q~Tslr~~~LQNRraLD~Lla~qG 91 (125)
T 4g2k_A 59 AKSLELLLRVTTEERTFSLINRHAIDFLLTRWG 91 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 367777888999999999999999877766554
No 63
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=31.31 E-value=2.9e+02 Score=28.12 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=11.0
Q ss_pred hhhhhccChhh-HHHHHHhhhh
Q 005307 15 EWQGYYINYKL-LKKKVNRYTQ 35 (703)
Q Consensus 15 ew~~~yi~Y~~-lK~~i~~~~~ 35 (703)
+++++-..|+. .|+.|.+++.
T Consensus 86 ~l~D~L~k~q~~V~~~LqeLe~ 107 (464)
T 1m1j_B 86 ELQTTLLKQEKTVKPVLRDLKD 107 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHhHHHHHHH
Confidence 45566666643 4555555443
No 64
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=30.52 E-value=65 Score=17.05 Aligned_cols=14 Identities=29% Similarity=0.354 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 005307 71 GALASRLSDLGEHH 84 (703)
Q Consensus 71 ~~~~~~~~~~~~~~ 84 (703)
+++.+|++.+++++
T Consensus 11 edlqerlrklrkkl 24 (27)
T 3twe_A 11 EDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45566666666654
No 65
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=30.42 E-value=2.5e+02 Score=24.39 Aligned_cols=37 Identities=8% Similarity=0.161 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 49 KDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHD 85 (703)
Q Consensus 49 ~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~ 85 (703)
.++...|..+.++...=......|+..++.-+..++.
T Consensus 70 ~e~~~~l~~~~~~Lr~~l~kdlee~r~~l~P~~~e~~ 106 (185)
T 3r2p_A 70 QEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQ 106 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3455555555554433333334444555544444443
No 66
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=30.12 E-value=63 Score=20.53 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 005307 68 EQQGALASRLSDLGEHHDAL 87 (703)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~ 87 (703)
+..+++.+|+..+|.+++.+
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L 35 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETL 35 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 34556666666666665543
No 67
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.37 E-value=1.5e+02 Score=21.60 Aligned_cols=62 Identities=15% Similarity=0.163 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 005307 53 RMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLLFFVEM 119 (703)
Q Consensus 53 ~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~l 119 (703)
..|..|+.+.+.- ..++....+.++.|-.+++++.. ...+.++..++. --.|++.|-+|.++
T Consensus 20 r~l~~ell~~~~~-s~~yl~~k~eLq~Li~~LDev~~-~~NpcIReaRRr---AV~EvQ~lit~lDl 81 (89)
T 2d9d_A 20 REIKNELLQAQNP-SELYLSSKTELQGLIGQLDEVSL-EKNPCIREARRR---AVIEVQTLITYIDL 81 (89)
T ss_dssp HHHHHHHHHCSCT-TTHHHHHHHHHHHHHHHHGGGCS-CSSHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-hHHHhhhHHHHHHHHHHHhhccc-CCChHHHHHHHH---HHHHHHHHHHHHHH
Confidence 3455555555433 34444555566667777777644 223344444332 33577778888774
No 68
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=29.36 E-value=1.8e+02 Score=30.47 Aligned_cols=36 Identities=11% Similarity=0.104 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 48 LKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDA 86 (703)
Q Consensus 48 ~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (703)
..+++..|.+|++|+.. .+.+++..++..+.....+
T Consensus 61 ~~e~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 96 (526)
T 2de0_X 61 AKELWFFLQSELKKLKN---LEGNELQRHADEFLLDLGH 96 (526)
T ss_dssp HHHHHHHHHHHHHHHHT---CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc---cCchHHHHHHHHHHHHHHH
Confidence 35667777888888766 3455666666665555443
No 69
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=28.67 E-value=78 Score=21.50 Aligned_cols=32 Identities=19% Similarity=0.434 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 47 VLKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGE 82 (703)
Q Consensus 47 ~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~ 82 (703)
.+.+|...+..+++.. .....++.++++.++.
T Consensus 24 EVD~FLd~v~~~~~~l----~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 24 EVNEFLAQVRKDYEIV----LRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 3678888887777764 3444555555555544
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.61 E-value=3.2e+02 Score=28.92 Aligned_cols=19 Identities=16% Similarity=0.060 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q 005307 98 ELQEAYRAVGHDLLRLLFF 116 (703)
Q Consensus 98 ~~~~~~~~~~~~l~~l~~~ 116 (703)
.+++...+...++..|.+-
T Consensus 562 ~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 562 ELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 71
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=28.14 E-value=2e+02 Score=22.13 Aligned_cols=12 Identities=17% Similarity=0.407 Sum_probs=6.0
Q ss_pred HHHHHhhhhccc
Q 005307 124 LRKILKKFDKRF 135 (703)
Q Consensus 124 ~~KilKK~dK~~ 135 (703)
++..|+-.|...
T Consensus 77 lk~~L~qRD~LI 88 (103)
T 4h22_A 77 VKEALKQREEML 88 (103)
T ss_dssp HHHHHHTTTSCC
T ss_pred HHHHHHHHHHHH
Confidence 344555555444
No 72
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=28.07 E-value=3.5e+02 Score=24.72 Aligned_cols=20 Identities=5% Similarity=0.135 Sum_probs=11.9
Q ss_pred HHhHHHHHHHHHHHHHhhhhc
Q 005307 113 LLFFVEMNATGLRKILKKFDK 133 (703)
Q Consensus 113 l~~~~~ln~~~~~KilKK~dK 133 (703)
|++|... ..+.+|.+||.++
T Consensus 136 l~~~~~~-~~~i~~~ikKR~~ 155 (251)
T 2fic_A 136 MDTYLGQ-FPDIKSRIAKRGR 155 (251)
T ss_dssp HHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHH-hHHHHHHHHHHHH
Confidence 5555532 5666666666664
No 73
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=26.99 E-value=2.2e+02 Score=21.97 Aligned_cols=20 Identities=20% Similarity=0.071 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 005307 96 ISELQEAYRAVGHDLLRLLF 115 (703)
Q Consensus 96 ~~~~~~~~~~~~~~l~~l~~ 115 (703)
.+..++.+..+..|+..|+.
T Consensus 70 ~~~~~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 70 RQRLREDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666666677666653
No 74
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=25.93 E-value=1.4e+02 Score=19.50 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 005307 64 LFLLEQQGALASRLSDLGEHHDALS 88 (703)
Q Consensus 64 ~f~~~~~~~~~~~~~~~~~~~~~~~ 88 (703)
.|-.-|++=+.+|+..++.++.++.
T Consensus 21 qF~~LkEqlY~ERl~ql~~~Leel~ 45 (49)
T 2xus_A 21 QFSELKEKLFRERLSQLRLRLEEVG 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666667777777777776654
No 75
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=25.41 E-value=3.9e+02 Score=24.33 Aligned_cols=13 Identities=31% Similarity=0.462 Sum_probs=8.3
Q ss_pred hhHHHHHHhhhhh
Q 005307 24 KLLKKKVNRYTQQ 36 (703)
Q Consensus 24 ~~lK~~i~~~~~~ 36 (703)
|.++|.+++.+..
T Consensus 7 k~~~K~~~R~~q~ 19 (237)
T 4avm_A 7 KQVQKKFSRAQEK 19 (237)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHH
Confidence 4567777776654
No 76
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=25.39 E-value=2.8e+02 Score=25.38 Aligned_cols=16 Identities=6% Similarity=0.245 Sum_probs=7.7
Q ss_pred hccChhhHHHHHHhhh
Q 005307 19 YYINYKLLKKKVNRYT 34 (703)
Q Consensus 19 ~yi~Y~~lK~~i~~~~ 34 (703)
.-+||+..|..+++..
T Consensus 156 k~lDyD~~~~~l~kl~ 171 (251)
T 2fic_A 156 KLVDYDSARHHYESLQ 171 (251)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 3455555554444443
No 77
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=25.08 E-value=2.2e+02 Score=21.49 Aligned_cols=24 Identities=8% Similarity=-0.094 Sum_probs=16.3
Q ss_pred hhhccChhhHHHHHHhhhhhhhcc
Q 005307 17 QGYYINYKLLKKKVNRYTQQIQVG 40 (703)
Q Consensus 17 ~~~yi~Y~~lK~~i~~~~~~~~~~ 40 (703)
+...-.|+.||+.+.++..+...-
T Consensus 19 s~~a~~~~~lk~E~~~lk~E~~st 42 (93)
T 3sjb_C 19 NELSKKYLAKVKERHELKEFNNSI 42 (93)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTTS
T ss_pred cHhHHHHHHHHHHHHHHHHHHhcc
Confidence 455667888888888887665543
No 78
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=25.06 E-value=1.1e+02 Score=17.90 Aligned_cols=15 Identities=47% Similarity=0.724 Sum_probs=9.2
Q ss_pred HHHHHHHhccCCCcc
Q 005307 423 YLLWLWISFREPPLE 437 (703)
Q Consensus 423 ~~i~~~~~l~e~~~~ 437 (703)
..+....+++|+|+-
T Consensus 15 giiFFAI~FRePPri 29 (32)
T 3arc_T 15 ALFFFAIFFREPPRI 29 (32)
T ss_dssp HHHHHHHHTSCCCCC
T ss_pred HHHHHhhhhcCCCCC
Confidence 333444567998874
No 79
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=24.90 E-value=2.5e+02 Score=22.06 Aligned_cols=19 Identities=5% Similarity=0.135 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 005307 55 LDDQIEKIVLFLLEQQGAL 73 (703)
Q Consensus 55 l~~e~~kv~~f~~~~~~~~ 73 (703)
++.|+++|..=|..+..|.
T Consensus 66 ~e~E~ae~k~KYD~~lqe~ 84 (115)
T 3vem_A 66 LERKMAEVQAEFRRKFHEV 84 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444433333333333
No 80
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=24.71 E-value=1.8e+02 Score=25.77 Aligned_cols=14 Identities=14% Similarity=0.515 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhhhh
Q 005307 119 MNATGLRKILKKFD 132 (703)
Q Consensus 119 ln~~~~~KilKK~d 132 (703)
+=+.-|.++|+||.
T Consensus 125 ~~~~~l~~~L~~~G 138 (197)
T 1dkg_A 125 LTLKSMLDVVRKFG 138 (197)
T ss_dssp HHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHCC
Confidence 33444444444443
No 81
>1td6_A F10_ORF294, hypothetical protein Mg237 homolog; alpha helical, structural genomics, PSI, protein structure initiative; 2.50A {Mycoplasma pneumoniae} SCOP: a.234.1.1
Probab=24.54 E-value=1e+02 Score=27.78 Aligned_cols=61 Identities=21% Similarity=0.274 Sum_probs=39.8
Q ss_pred chhhhhccChhhHHHHHHhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 14 QEWQGYYINYKLLKKKVNRYTQQIQVGAENRLNVLKDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDA 86 (703)
Q Consensus 14 ~ew~~~yi~Y~~lK~~i~~~~~~~~~~~~~~~~~~~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~ 86 (703)
..-+.|+-|||.|++..|..-... .+....|+ .+.++||..-.+ .+|+.+-+++++++++.
T Consensus 25 ~~lk~hf~~y~~l~~~f~~y~~~~-------~deLt~fy---~n~l~ki~~lvk--~Kdfk~Ale~~eEELdt 85 (306)
T 1td6_A 25 SALKKHFASYKELREAFNDYHKHN-------GDELTTFF---LHQFDKVMELVK--QKDFKTAQSRCEEELAA 85 (306)
T ss_dssp SBCCCCCSSHHHHHHHHHHHHTTT-------CSSHHHHH---HHHHHHHHHHHH--TTCHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCc-------hhHHHHHH---HHHHHHHHHHHh--hhhHHHHHHHHHHHhcC
Confidence 345678999999999998865332 12235555 466777776554 45666666677776654
No 82
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=24.44 E-value=2.3e+02 Score=22.75 Aligned_cols=28 Identities=29% Similarity=0.327 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005307 46 NVLKDFARMLDDQIEKIVLFLLEQQGAL 73 (703)
Q Consensus 46 ~~~~~f~~~l~~e~~kv~~f~~~~~~~~ 73 (703)
..+.+..+.-|.=+.+|+.-+..|++|+
T Consensus 93 ~~e~eIQKLTDkyIkkID~ll~~KEKEI 120 (123)
T 3lhp_S 93 QSLWDVQKLTDAAIKKIEAALADMEAWL 120 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555554
No 83
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=24.10 E-value=1.6e+02 Score=19.83 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 005307 95 RISELQEAYRAVGHDLLRLLFFVEMNATGLRKILKK 130 (703)
Q Consensus 95 ~~~~~~~~~~~~~~~l~~l~~~~~ln~~~~~KilKK 130 (703)
+.+.+.+++..+.+++..+.+.+-=|+.|+==++-|
T Consensus 3 dl~~~~~si~~l~~ql~sla~vvlQNRraLD~L~a~ 38 (55)
T 1mof_A 3 DLREVEKSISNLEKSLTSLSEVVLQNRRGLDLLFLK 38 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888888899999999999999987655443
No 84
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=24.00 E-value=20 Score=18.81 Aligned_cols=14 Identities=14% Similarity=0.128 Sum_probs=10.8
Q ss_pred hhhhhccccCchhH
Q 005307 302 YFSAWSNRSYLKPL 315 (703)
Q Consensus 302 ~~G~l~Dr~Grr~~ 315 (703)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46788889999864
No 85
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.77 E-value=2.2e+02 Score=26.38 Aligned_cols=10 Identities=20% Similarity=0.298 Sum_probs=5.5
Q ss_pred HHHhhhhccc
Q 005307 126 KILKKFDKRF 135 (703)
Q Consensus 126 KilKK~dK~~ 135 (703)
.+|++|+|..
T Consensus 176 ~lL~~Yerir 185 (256)
T 3na7_A 176 KIYSFYERIR 185 (256)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4566666543
No 86
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=23.47 E-value=2.6e+02 Score=22.68 Aligned_cols=30 Identities=27% Similarity=0.383 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 005307 58 QIEKIVLFLLEQQGALASRLSDLGEHHDAL 87 (703)
Q Consensus 58 e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~ 87 (703)
.++....|+.+|.+.+.++++.+++++..+
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l 114 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRAI 114 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788888888888877776553
No 87
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=23.22 E-value=1.8e+02 Score=19.82 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=20.2
Q ss_pred HHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHH
Q 005307 79 DLGEHHDALSQHQDGSRISELQEAYRAVGHDLLRLL 114 (703)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 114 (703)
.++..+.+.+....-+....|.+.+.++..++..++
T Consensus 20 ~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~~ 55 (59)
T 1z0j_B 20 NIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQK 55 (59)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444455667777777777766654
No 88
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=23.13 E-value=2.5e+02 Score=21.34 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhcc
Q 005307 102 AYRAVGHDLLRLLFFVEMNATGLRKILKKFDKR 134 (703)
Q Consensus 102 ~~~~~~~~l~~l~~~~~ln~~~~~KilKK~dK~ 134 (703)
++.-+.+.-.+|+.|..||+-|.-=+|..+--.
T Consensus 49 aLqLfLRaTTElRTfsilNRkAIDFLL~RWGGT 81 (131)
T 1ebo_A 49 ALQLFLRATTELRTFSILNRKAIDFLLQRWGGT 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTCH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCc
Confidence 444455666789999999999988888776643
No 89
>2qup_A BH1478 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Bacillus halodurans}
Probab=22.71 E-value=3.3e+02 Score=22.61 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHH
Q 005307 49 KDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVG 107 (703)
Q Consensus 49 ~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (703)
..|...++.+-++. . ..++.+-++.+.++-+.+.+.++.++....++.+.++-
T Consensus 25 ~~F~~~l~~~~~~~---~---~e~L~~ll~~I~~~G~rL~~~~t~~~l~~YK~lVk~Fl 77 (145)
T 2qup_A 25 VSFSEVMGKQRDEK---A---YERLQALMSKIDDQGKLLSETRTIEELRKYKELVKEFV 77 (145)
T ss_dssp CCHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45888887764422 1 23344444444444444444455544444444444443
No 90
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=22.64 E-value=5.8e+02 Score=25.41 Aligned_cols=22 Identities=0% Similarity=-0.235 Sum_probs=10.7
Q ss_pred hhccCChhhhhhHHHHHHHHHH
Q 005307 361 ISDCVPLKLRMRASAGFVSASA 382 (703)
Q Consensus 361 i~~~~~~~~R~~~~~~~~~~~~ 382 (703)
.....-..++.+..........
T Consensus 149 ~~~~l~~~~~~~~~~~~~~~~~ 170 (460)
T 3mkt_A 149 LRSFTDGMSLTKPAMVIGFIGL 170 (460)
T ss_dssp HTTTTCTTSCCTTTHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHH
Confidence 3444555555555555444433
No 91
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=22.29 E-value=1.1e+02 Score=24.71 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=8.9
Q ss_pred hccChhhHHHHHHhhh
Q 005307 19 YYINYKLLKKKVNRYT 34 (703)
Q Consensus 19 ~yi~Y~~lK~~i~~~~ 34 (703)
.|-+|+.-|+.++...
T Consensus 24 Ey~~~k~A~~~l~~D~ 39 (122)
T 2oeq_A 24 PFQQLKRAYEDVRRDE 39 (122)
T ss_dssp HHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHCCH
Confidence 3555666666665543
No 92
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=21.65 E-value=4.5e+02 Score=23.72 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=0.0
Q ss_pred hhHHHHHHhhhhh
Q 005307 24 KLLKKKVNRYTQQ 36 (703)
Q Consensus 24 ~~lK~~i~~~~~~ 36 (703)
+.+||.+++....
T Consensus 11 ~~~~k~~~R~~q~ 23 (244)
T 1uru_A 11 KSVQKHAGRAKEK 23 (244)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 4567777776543
No 93
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.46 E-value=2.1e+02 Score=20.82 Aligned_cols=10 Identities=30% Similarity=0.508 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q 005307 74 ASRLSDLGEH 83 (703)
Q Consensus 74 ~~~~~~~~~~ 83 (703)
.+|+..||.+
T Consensus 13 e~Ri~~LE~k 22 (78)
T 3efg_A 13 EARLVELETR 22 (78)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 94
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=21.45 E-value=3.4e+02 Score=22.33 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHh
Q 005307 75 SRLSDLGEHHDAL 87 (703)
Q Consensus 75 ~~~~~~~~~~~~~ 87 (703)
.++..|+.+++.+
T Consensus 73 ~~F~~Ld~~L~~l 85 (140)
T 1xaw_A 73 KELSRLDKELDDY 85 (140)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhC
Confidence 4444444444443
No 95
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=21.26 E-value=2.1e+02 Score=25.57 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005307 51 FARMLDDQIEKIVLFLLEQQGAL 73 (703)
Q Consensus 51 f~~~l~~e~~kv~~f~~~~~~~~ 73 (703)
..+.-|.-+.+|+.-+..|++|+
T Consensus 184 iQklTd~~i~~iD~~l~~KEkEi 206 (209)
T 4gfq_A 184 IQKETDKYIAKVDEIAKNKEKEI 206 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444443
No 96
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=20.94 E-value=1.9e+02 Score=19.11 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 005307 53 RMLDDQIEKIVLFLLEQQGALAS 75 (703)
Q Consensus 53 ~~l~~e~~kv~~f~~~~~~~~~~ 75 (703)
..++.|++.+..=|..|..=+.+
T Consensus 24 ~~Me~Ei~elr~RY~~KRqPIld 46 (51)
T 2jo8_A 24 PMMEQEIEEIRQKYQSKRQPILD 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhHHH
Confidence 45666777776666666555444
No 97
>2p61_A Hypothetical protein TM_1646; structural genomics, unknown function, PSI-2, protein structure initiative; 2.70A {Thermotoga maritima MSB8} SCOP: a.24.29.1
Probab=20.74 E-value=3.9e+02 Score=22.69 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHH
Q 005307 49 KDFARMLDDQIEKIVLFLLEQQGALASRLSDLGEHHDALSQHQDGSRISELQEAYRAVGHDL 110 (703)
Q Consensus 49 ~~f~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 110 (703)
..|...|+.+-++. + .+++.+-++.+.++-+.+.+.++.++....++.+.++-.+.
T Consensus 35 ~~F~~~l~~~~~~~---~---~e~L~~Ll~~I~~~G~rL~~~~t~~~l~~YK~lVK~FL~~v 90 (162)
T 2p61_A 35 KEFFDILEDVKEDH---F---EKLLEEAVEEVIDSGNELVRSPTPSNLKRYKNAIKEFLKLI 90 (162)
T ss_dssp -CHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 45888877743322 2 33444444455555555555566666655555555554443
No 98
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=20.22 E-value=61 Score=18.43 Aligned_cols=15 Identities=40% Similarity=0.452 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHH
Q 005307 67 LEQQGALASRLSDLG 81 (703)
Q Consensus 67 ~~~~~~~~~~~~~~~ 81 (703)
.+|++++.+|++.|+
T Consensus 14 eekEDkLAqRLRALR 28 (29)
T 3ggz_E 14 DEKEDKLAQRLRALR 28 (29)
T ss_pred chhhHHHHHHHHHHc
Confidence 457788888888764
Done!