BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005310
(703 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 462 bits (1189), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/657 (37%), Positives = 406/657 (61%), Gaps = 11/657 (1%)
Query: 52 SIVRVNLSASEILKLADKIVSKSKEVHDAVASVPLDKVTFMNVISPLAELEAQQFPLVQS 111
+++R +LS +I +++++++K+V+D V ++ L +VT+ N + LA++E
Sbjct: 23 NVLRWDLSPEQIKTRTEQLIAQTKQVYDTVGTIALKEVTYENCLQVLADIEVTYIVERTM 82
Query: 112 CVFPKLVCTSDDVCKSSAEAERKIDAHMLSCSNREDVYRVVKAVAATG--EWVSPEAKRY 169
FP+ V + +V +S EA++K+ + S REDV++ + + T E + PEA+RY
Sbjct: 83 LDFPQHVSSDREVRAASTEADKKLSRFDIEMSMREDVFQRIVHLQETCDLEKIKPEARRY 142
Query: 170 IQSLVRDFERSGLNLTISKREEVQRLRDQIDELSLQYVRNLNDDKTFLLFSEADLLGLPP 229
++ ++ +R+GL+L+ R E++ ++ ++ EL + + +NLN+D T L+FS+A+L LP
Sbjct: 143 LEKSIKMGKRNGLHLSEHIRNEIKSMKKRMSELCIDFNKNLNEDDTSLVFSKAELGALPD 202
Query: 230 EFLKSLDKAENGIFKVTLKSHHVAAVLELCKVGRTRRLVAVAYGKRCGGINLSVLESLVE 289
+F+ SL+K + +KVTLK H V++ C V TRR + +A+ RC N ++L+ L+
Sbjct: 203 DFIDSLEKTDEDKYKVTLKYPHYFPVMKKCCVPETRRKMEMAFHTRCKQENTAILQQLLP 262
Query: 290 LRHKFARLLGYSNYADYALDLRMAKSSSKVFEFLEEISASLTDLASRELMMLKDLKRKEE 349
LR + A+LLGY+ +AD+ L+L AKS+S+V FL+++S L L E + LK+KE
Sbjct: 263 LRAQVAKLLGYNTHADFVLELNTAKSTSRVAAFLDDLSQKLKPLGEAEREFILSLKKKEC 322
Query: 350 GELPFGIE------DLLYYVRRVEELQFDLDFGAVKQYFPVNLVLSGIFKVFQDLFGLRF 403
E F + DL YY+ + EEL++ +D ++K+YFP+ +V G+ ++Q+L GL F
Sbjct: 323 EERGFEYDGKINAWDLHYYMTQTEELKYSVDQESLKEYFPIEVVTEGLLSIYQELLGLSF 382
Query: 404 EEVLDAVVWHSDVRVFSVFDLSSNDLLGYFYLDIYKREGKYVHTCVVALQNGALSSTGAR 463
E+V DA VW+ V +++V D ++ ++LG FYLD+Y REGKY H LQ G L G+R
Sbjct: 383 EQVPDAHVWNKSVSLYTVKDKATGEVLGQFYLDLYPREGKYNHAACFGLQPGCLLPDGSR 442
Query: 464 QIPVALLISQIQKDIVGHPSLLRFSEVVNFFHEFGHVVQQICNRASFARFSGLRVDPDFV 523
+ VA L+ + + G PSLLR EV +FHEFGHV+ QIC + FARFSG V+ DFV
Sbjct: 443 MMSVAALVVNFSQPVAGRPSLLRHDEVRTYFHEFGHVMHQICAQTDFARFSGTNVETDFV 502
Query: 524 EIPAQLLENWCYESFSLKLISGFHQDITTPIKDEICKSLKRRRYAFSALKLKQEILYCIF 583
E+P+Q+LENW ++ SL+ +S ++D PI DE+ + L R + L ++I+
Sbjct: 503 EVPSQMLENWVWDVDSLRKLSKHYKD-GHPITDELLEKLVASRLVNTGLLTLRQIVLSKV 561
Query: 584 DQVIHSADNVDIVELFKHLHPKVMLGLPMLEGTNPASCFPRSAIGFESACYSRIWSEVFA 643
DQ +H+ +D + ++ LG+ GTN + F A G++ Y +WSEVF+
Sbjct: 562 DQSLHTNATLDAASEYAKYCTEI-LGVAATPGTNMPATFGHLAGGYDGQYYGYLWSEVFS 620
Query: 644 ADIF-ACKFRDGLLNQRVGMQFRNNVLAPGGSKEPIEILSDFLGREPSIQAFVDSRA 699
D+F +C ++G++N VGM++RN +L PGGS + +++L +FL REP+ +AF+ SR
Sbjct: 621 MDMFHSCFKKEGIMNPEVGMKYRNLILKPGGSLDGMDMLQNFLQREPNQKAFLMSRG 677
>pdb|2O3E|A Chain A, Crystal Structure Of Engineered Neurolysin With Thimet
Oligopeptidase Specificity For Neurotensin Cleavage Site
Length = 678
Score = 462 bits (1188), Expect = e-130, Method: Compositional matrix adjust.
Identities = 245/657 (37%), Positives = 406/657 (61%), Gaps = 11/657 (1%)
Query: 52 SIVRVNLSASEILKLADKIVSKSKEVHDAVASVPLDKVTFMNVISPLAELEAQQFPLVQS 111
+++R +LS +I +++++++K+V+D V ++ L +VT+ N + LA++E
Sbjct: 23 NVLRWDLSPEQIKTRTEQLIAQTKQVYDTVGTIALKEVTYENCLQVLADIEVTYIVERTM 82
Query: 112 CVFPKLVCTSDDVCKSSAEAERKIDAHMLSCSNREDVYRVVKAVAATG--EWVSPEAKRY 169
FP+ V + +V +S EA++K+ + S REDV++ + + T E + PEA+RY
Sbjct: 83 LDFPQHVSSDREVRAASTEADKKLSRFDIEMSMREDVFQRIVHLQETCDLEKIKPEARRY 142
Query: 170 IQSLVRDFERSGLNLTISKREEVQRLRDQIDELSLQYVRNLNDDKTFLLFSEADLLGLPP 229
++ ++ +R+GL+L+ R E++ ++ ++ EL + + +NLN+D T L+FS+A+L LP
Sbjct: 143 LEKSIKMGKRNGLHLSEHIRNEIKSMKKRMSELCIDFNKNLNEDDTSLVFSKAELGALPD 202
Query: 230 EFLKSLDKAENGIFKVTLKSHHVAAVLELCKVGRTRRLVAVAYGKRCGGINLSVLESLVE 289
+F+ SL+K + +KVTLK H V++ C V TRR + +A+ RC N ++L+ L+
Sbjct: 203 DFIDSLEKTDEDKYKVTLKYPHYFPVMKKCCVPETRRKMEMAFHTRCKQENTAILQQLLP 262
Query: 290 LRHKFARLLGYSNYADYALDLRMAKSSSKVFEFLEEISASLTDLASRELMMLKDLKRKEE 349
LR + A+LLGY+ +AD+ L+L AKS+S+V FL+++S L L E + LK+KE
Sbjct: 263 LRAQVAKLLGYNTHADFVLELNTAKSTSRVAAFLDDLSQKLKPLGEAEREFILSLKKKEC 322
Query: 350 GELPFGIE------DLLYYVRRVEELQFDLDFGAVKQYFPVNLVLSGIFKVFQDLFGLRF 403
E F + DL YY+ + EEL++ +D ++K+YFP+ +V G+ ++Q+L GL F
Sbjct: 323 EERGFEYDGKINAWDLHYYMTQTEELKYSVDQESLKEYFPIEVVTEGLLSIYQELLGLSF 382
Query: 404 EEVLDAVVWHSDVRVFSVFDLSSNDLLGYFYLDIYKREGKYVHTCVVALQNGALSSTGAR 463
E+V DA VW+ V +++V D ++ ++LG FYLD+Y REGKY H LQ G L G+R
Sbjct: 383 EQVPDAHVWNKSVSLYTVKDKATGEVLGQFYLDLYPREGKYNHAACFGLQPGCLLPDGSR 442
Query: 464 QIPVALLISQIQKDIVGHPSLLRFSEVVNFFHEFGHVVQQICNRASFARFSGLRVDPDFV 523
+ VA L+ + + G PSLLR EV +FHEFGHV+ QIC + FARFSG V+ DFV
Sbjct: 443 MMSVAALVVNFSQPVAGRPSLLRHDEVETYFHEFGHVMHQICAQTDFARFSGTNVERDFV 502
Query: 524 EIPAQLLENWCYESFSLKLISGFHQDITTPIKDEICKSLKRRRYAFSALKLKQEILYCIF 583
E+P+Q+LENW ++ SL+ +S ++D PI DE+ + L R + L ++I+
Sbjct: 503 EVPSQMLENWVWDVDSLRKLSKHYKD-GHPITDELLEKLVASRLVNTGLLTLRQIVLSKV 561
Query: 584 DQVIHSADNVDIVELFKHLHPKVMLGLPMLEGTNPASCFPRSAIGFESACYSRIWSEVFA 643
DQ +H+ +D + ++ LG+ GTN + F A G++ Y +WSEVF+
Sbjct: 562 DQSLHTNATLDAASEYAKYCTEI-LGVAATPGTNMPATFGHLAGGYDGQYYGYLWSEVFS 620
Query: 644 ADIF-ACKFRDGLLNQRVGMQFRNNVLAPGGSKEPIEILSDFLGREPSIQAFVDSRA 699
D+F +C ++G++N VGM++RN +L PGGS + +++L +FL REP+ +AF+ SR
Sbjct: 621 MDMFHSCFKKEGIMNPEVGMKYRNLILKPGGSLDGMDMLQNFLQREPNQKAFLMSRG 677
>pdb|2O36|A Chain A, Crystal Structure Of Engineered Thimet Oligopeptidase With
Neurolysin Specificity In Neurotensin Cleavage Site
Length = 674
Score = 451 bits (1161), Expect = e-127, Method: Compositional matrix adjust.
Identities = 243/655 (37%), Positives = 389/655 (59%), Gaps = 11/655 (1%)
Query: 54 VRVNLSASEILKLADKIVSKSKEVHDAVASVPLDKVTFMNVISPLAELEAQQFPLVQSCV 113
+R +LSA +I + +++ ++K V+D V + + V++ + + LA++E
Sbjct: 9 LRWDLSAQQIEERTRELIEQTKRVYDQVGTQEFEDVSYESTLKALADVEVTYTVQRNILD 68
Query: 114 FPKLVCTSDDVCKSSAEAERKIDAHMLSCSNREDVYRVVKAVA--ATGEWVSPEAKRYIQ 171
FP+ V S D+ +S EA++K+ + S REDVY+ + + + + PEA RY++
Sbjct: 69 FPQHVSPSKDIRTASTEADKKLSEFDVEMSMREDVYQRIVWLQEKVQKDSLRPEAARYLE 128
Query: 172 SLVRDFERSGLNLTISKREEVQRLRDQIDELSLQYVRNLNDDKTFLLFSEADLLGLPPEF 231
L++ R+GL+L +E ++R++ ++ L + + +NLN+D TFL F+ +L GLP +F
Sbjct: 129 RLIKLGRRNGLHLPRETQENIKRIKKKLSLLCIDFNKNLNEDTTFLPFTLQELGGLPEDF 188
Query: 232 LKSLDKAENGIFKVTLKSHHVAAVLELCKVGRTRRLVAVAYGKRCGGINLSVLESLVELR 291
L SL+K E+G KVTLK H +L+ C V TRR V A+ RC N ++L+ LV LR
Sbjct: 189 LNSLEKMEDGKLKVTLKYPHYFPLLKKCHVPETRRKVEEAFNSRCKEENSAILKELVTLR 248
Query: 292 HKFARLLGYSNYADYALDLRMAKSSSKVFEFLEEISASLTDLASRELMMLKDLKRKE--E 349
+ +RLLG+ +ADY L++ MAK+S V FL+E++ L L +E ++ +LKR E
Sbjct: 249 AQKSRLLGFHTHADYVLEMNMAKTSQTVATFLDELAQKLKPLGEQERAVILELKRAECER 308
Query: 350 GELPFG----IEDLLYYVRRVEELQFDLDFGAVKQYFPVNLVLSGIFKVFQDLFGLRFEE 405
LPF D+ YY+ +VEE ++ +D +K+YFPV +V G+ ++Q+L GL F
Sbjct: 309 RGLPFDGRIRAWDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTHGLLGIYQELLGLAFHH 368
Query: 406 VLDAVVWHSDVRVFSVFDLSSNDLLGYFYLDIYKREGKYVHTCVVALQNGALSSTGARQI 465
A WH DVR+++ D +S +++G FYLD+Y REGKY H LQ G L G+RQI
Sbjct: 369 EEGASAWHEDVRLYTARDAASGEVVGKFYLDLYPREGKYGHAACFGLQPGCLRQDGSRQI 428
Query: 466 PVALLISQIQKDIVGHPSLLRFSEVVNFFHEFGHVVQQICNRASFARFSGLRVDPDFVEI 525
+A +++ K PSLL+ EV +FHEFGHV+ Q+C++A FA FSG V+ DFVE
Sbjct: 429 AIAAMVANFTKPTADAPSLLQHDEVRTYFHEFGHVMHQLCSQAEFAMFSGTHVETDFVEA 488
Query: 526 PAQLLENWCYESFSLKLISGFHQDITTPIKDEICKSLKRRRYAFSALKLKQEILYCIFDQ 585
P+Q+LENW +E L +S H + + E+ + L R A + L ++I+ DQ
Sbjct: 489 PSQMLENWVWEQEPLLRMSR-HYRTGSAVPRELLEKLIESRQANTGLFNLRQIVLAKVDQ 547
Query: 586 VIHSADNVDIVELFKHLHPKVMLGLPMLEGTNPASCFPRSAIGFESACYSRIWSEVFAAD 645
+H+ + D E + L ++ LG+P GTN + F A G+++ Y +WSEV++ D
Sbjct: 548 ALHTQTDADPAEEYARLCQEI-LGVPATPGTNMPATFGHLAGGYDAQYYGYLWSEVYSMD 606
Query: 646 IFACKFR-DGLLNQRVGMQFRNNVLAPGGSKEPIEILSDFLGREPSIQAFVDSRA 699
+F +F+ +G+LN +VGM +R+ +L PGGS++ +L FLGR+P AF+ S+
Sbjct: 607 MFHTRFKQEGVLNSKVGMDYRSCILRPGGSEDASAMLRRFLGRDPKQDAFLLSKG 661
>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase
Length = 674
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 243/655 (37%), Positives = 389/655 (59%), Gaps = 11/655 (1%)
Query: 54 VRVNLSASEILKLADKIVSKSKEVHDAVASVPLDKVTFMNVISPLAELEAQQFPLVQSCV 113
+R +LSA +I + +++ ++K V+D V + + V++ + + LA++E
Sbjct: 9 LRWDLSAQQIEERTRELIEQTKRVYDQVGTQEFEDVSYESTLKALADVEVTYTVQRNILD 68
Query: 114 FPKLVCTSDDVCKSSAEAERKIDAHMLSCSNREDVYRVVKAVA--ATGEWVSPEAKRYIQ 171
FP+ V S D+ +S EA++K+ + S REDVY+ + + + + PEA RY++
Sbjct: 69 FPQHVSPSKDIRTASTEADKKLSEFDVEMSMREDVYQRIVWLQEKVQKDSLRPEAARYLE 128
Query: 172 SLVRDFERSGLNLTISKREEVQRLRDQIDELSLQYVRNLNDDKTFLLFSEADLLGLPPEF 231
L++ R+GL+L +E ++R++ ++ L + + +NLN+D TFL F+ +L GLP +F
Sbjct: 129 RLIKLGRRNGLHLPRETQENIKRIKKKLSLLCIDFNKNLNEDTTFLPFTLQELGGLPEDF 188
Query: 232 LKSLDKAENGIFKVTLKSHHVAAVLELCKVGRTRRLVAVAYGKRCGGINLSVLESLVELR 291
L SL+K E+G KVTLK H +L+ C V TRR V A+ RC N ++L+ LV LR
Sbjct: 189 LNSLEKMEDGKLKVTLKYPHYFPLLKKCHVPETRRKVEEAFNSRCKEENSAILKELVTLR 248
Query: 292 HKFARLLGYSNYADYALDLRMAKSSSKVFEFLEEISASLTDLASRELMMLKDLKRKE--E 349
+ +RLLG+ +ADY L++ MAK+S V FL+E++ L L +E ++ +LKR E
Sbjct: 249 AQKSRLLGFHTHADYVLEMNMAKTSQTVATFLDELAQKLKPLGEQERAVILELKRAECER 308
Query: 350 GELPFG----IEDLLYYVRRVEELQFDLDFGAVKQYFPVNLVLSGIFKVFQDLFGLRFEE 405
LPF D+ YY+ +VEE ++ +D +K+YFPV +V G+ ++Q+L GL F
Sbjct: 309 RGLPFDGRIRAWDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTHGLLGIYQELLGLAFHH 368
Query: 406 VLDAVVWHSDVRVFSVFDLSSNDLLGYFYLDIYKREGKYVHTCVVALQNGALSSTGARQI 465
A WH DVR+++ D +S +++G FYLD+Y REGKY H LQ G L G+RQI
Sbjct: 369 EEGASAWHEDVRLYTARDAASGEVVGKFYLDLYPREGKYGHAACFGLQPGCLRQDGSRQI 428
Query: 466 PVALLISQIQKDIVGHPSLLRFSEVVNFFHEFGHVVQQICNRASFARFSGLRVDPDFVEI 525
+A +++ K PSLL+ EV +FHEFGHV+ Q+C++A FA FSG V+ DFVE
Sbjct: 429 AIAAMVANFTKPTADAPSLLQHDEVETYFHEFGHVMHQLCSQAEFAMFSGTHVERDFVEA 488
Query: 526 PAQLLENWCYESFSLKLISGFHQDITTPIKDEICKSLKRRRYAFSALKLKQEILYCIFDQ 585
P+Q+LENW +E L +S H + + E+ + L R A + L ++I+ DQ
Sbjct: 489 PSQMLENWVWEQEPLLRMSR-HYRTGSAVPRELLEKLIESRQANTGLFNLRQIVLAKVDQ 547
Query: 586 VIHSADNVDIVELFKHLHPKVMLGLPMLEGTNPASCFPRSAIGFESACYSRIWSEVFAAD 645
+H+ + D E + L ++ LG+P GTN + F A G+++ Y +WSEV++ D
Sbjct: 548 ALHTQTDADPAEEYARLCQEI-LGVPATPGTNMPATFGHLAGGYDAQYYGYLWSEVYSMD 606
Query: 646 IFACKFR-DGLLNQRVGMQFRNNVLAPGGSKEPIEILSDFLGREPSIQAFVDSRA 699
+F +F+ +G+LN +VGM +R+ +L PGGS++ +L FLGR+P AF+ S+
Sbjct: 607 MFHTRFKQEGVLNSKVGMDYRSCILRPGGSEDASAMLRRFLGRDPKQDAFLLSKG 661
>pdb|1Y79|1 Chain 1, Crystal Structure Of The E.Coli Dipeptidyl
Carboxypeptidase Dcp In Complex With A Peptidic
Inhibitor
Length = 680
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 119/426 (27%), Positives = 204/426 (47%), Gaps = 15/426 (3%)
Query: 282 SVLESLVELRHKFARLLGYSNYADYALDLRMAKSSSKVFEFLEEISASLTDLASRELMML 341
++++ LVE+R + A LLG+ +YA + + +MAK+ F+ EI + AS EL +
Sbjct: 259 AIIQRLVEIRAQQATLLGFPHYAAWKIADQMAKTPEAALNFMREIVPAARQRASDELASI 318
Query: 342 KDLKRKEEGELPFGIEDLLYYVRRVEELQFDLDFGAVKQYFPVNLVLS-GIFKVFQDLFG 400
+ + K++G D +Y +V +FDLD +K YF +N VL+ G+F LFG
Sbjct: 319 QAVIDKQQGGFSAQPWDWAFYAEQVRREKFDLDEAQLKPYFELNTVLNEGVFWTANQLFG 378
Query: 401 LRFEEVLDAVVWHSDVRVFSVFDLSSNDLLGYFYLDIYKREGKYVHTCVVALQNGALSST 460
++F E D V+H DVRV+ +FD + L FY D + R+ K + + N ST
Sbjct: 379 IKFVERFDIPVYHPDVRVWEIFDHNGVG-LALFYGDFFARDSK---SGGAWMGNFVEQST 434
Query: 461 GARQIPVALLISQIQKDIVGHPSLLRFSEVVNFFHEFGHVVQQICNRASFARFSGLRVDP 520
+ PV + QK G P+LL + +V+ FHEFGH + + R +A SG
Sbjct: 435 LNKTHPVIYNVCNYQKPAAGEPALLLWDDVITLFHEFGHTLHGLFARQRYATLSGTNTPR 494
Query: 521 DFVEIPAQLLENWCYESFSLKLISGFHQDITTPIKDEICKSLKRRRYAFSALKLKQEILY 580
DFVE P+Q+ E+W + +Q + DE+ + ++ ++ + +
Sbjct: 495 DFVEFPSQINEHWATHPQVFARYARHYQS-GAAMPDELQQKMRNASLFNKGYEMSELLSA 553
Query: 581 CIFDQVIH------SADNVDIVELFKHLHPKVMLGLPMLEGTNPASCFPRS-AIGFESAC 633
+ D H + +VD EL + L + M LP + +S F G+ +
Sbjct: 554 ALLDMRWHCLEENEAMQDVDDFEL-RALVAENM-DLPAIPPRYRSSYFAHIFGGGYAAGY 611
Query: 634 YSRIWSEVFAADIFACKFRDGLLNQRVGMQFRNNVLAPGGSKEPIEILSDFLGREPSIQA 693
Y+ +W+++ A D + G L + G++FR +L+ G S++ + + G+ P I
Sbjct: 612 YAYLWTQMLADDGYQWFVEQGGLTRENGLRFREAILSRGNSEDLERLYRQWRGKAPKIMP 671
Query: 694 FVDSRA 699
+ R
Sbjct: 672 MLQHRG 677
>pdb|1QOZ|A Chain A, Catalytic Core Domain Of Acetyl Xylan Esterase From
Trichoderma Reesei
pdb|1QOZ|B Chain B, Catalytic Core Domain Of Acetyl Xylan Esterase From
Trichoderma Reesei
Length = 207
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 29/67 (43%)
Query: 604 PKVMLGLPMLEGTNPASCFPRSAIGFESACYSRIWSEVFAADIFACKFRDGLLNQRVGMQ 663
P+ + GLP GT F GF S+I S AAD + C D ++Q G +
Sbjct: 134 PRNIHGLPYNVGTCTTQGFDARPAGFVCPSASKIKSYCDAADPYCCTGNDPNVHQGYGQE 193
Query: 664 FRNNVLA 670
+ LA
Sbjct: 194 YGQQALA 200
>pdb|3HF3|A Chain A, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|B Chain B, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|C Chain C, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HF3|D Chain D, Old Yellow Enzyme From Thermus Scotoductus Sa-01
pdb|3HGJ|A Chain A, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|B Chain B, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|C Chain C, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
pdb|3HGJ|D Chain D, Old Yellow Enzyme From Thermus Scotoductus Sa-01 Complexed
With P-Hydroxy-Benzaldehyde
Length = 349
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 320 FEFLEEISASLTDLASRELMMLKDLKRKEEGELPFGIEDLLYYVRRVEELQFDL 373
F +++ ++ ++ REL + + + GE + +ED L + RR++EL DL
Sbjct: 202 MRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLEDTLAFARRLKELGVDL 255
>pdb|1XDO|A Chain A, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
pdb|1XDO|B Chain B, Crystal Structure Of Escherichia Coli Polyphosphate Kinase
pdb|1XDP|A Chain A, Crystal Structure Of The E.Coli Polyphosphate Kinase In
Complex With Amppnp
pdb|1XDP|B Chain B, Crystal Structure Of The E.Coli Polyphosphate Kinase In
Complex With Amppnp
Length = 687
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 19/141 (13%)
Query: 293 KFARLLGYSNYADYALDLRMAKSSSKVFEFLEEISASLT-------DLASREL---MMLK 342
K ARL Y++Y+ D R+ +VF F+E +T SR L M+ +
Sbjct: 462 KTARL--YTDYSLLTADARITNEVRRVFNFIENPYRPVTFDYLMVSPQNSRRLLYEMVDR 519
Query: 343 DLKRKEEGELPFGIEDLLYYVRRVEELQFDLDFGAVKQYFPVNLVLSGIFKVFQDLFG-- 400
++ ++G LP GI L V++ D + A PVNL++ G+ + +L G
Sbjct: 520 EIANAQQG-LPSGIT--LKLNNLVDKGLVDRLYAASSSGVPVNLLVRGMCSLIPNLEGIS 576
Query: 401 --LRFEEVLDAVVWHSDVRVF 419
+R ++D + H V +F
Sbjct: 577 DNIRAISIVDRYLEHDRVYIF 597
>pdb|1DDB|A Chain A, Structure Of Mouse Bid, Nmr, 20 Structures
Length = 195
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 141 SCSNREDVYRVVKAVAATGEWVSPEAKRYIQ-SLVRDFERSGLNLTISKREEVQRLRDQI 199
S S E ++ + + +A G+ E IQ +LVR +N ++S+ ++ L +
Sbjct: 76 SESQEEIIHNIARHLAQIGD----EMDHNIQPTLVRQLAAQFMNGSLSEEDKRNCLAKAL 131
Query: 200 DELSLQYVRNLNDDKTFLLFS 220
DE+ + R++ +DK L+ +
Sbjct: 132 DEVKTAFPRDMENDKAMLIMT 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,247,600
Number of Sequences: 62578
Number of extensions: 777702
Number of successful extensions: 2162
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2127
Number of HSP's gapped (non-prelim): 10
length of query: 703
length of database: 14,973,337
effective HSP length: 106
effective length of query: 597
effective length of database: 8,340,069
effective search space: 4979021193
effective search space used: 4979021193
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)