Query 005312
Match_columns 703
No_of_seqs 271 out of 1341
Neff 4.5
Searched_HMMs 13730
Date Mon Mar 25 21:46:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005312.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/005312hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 70.4 0.99 7.2E-05 34.7 2.1 25 150-174 17-41 (56)
2 d1joca1 g.50.1.1 (A:1348-1411) 56.0 2.4 0.00018 32.6 2.0 27 151-177 7-35 (64)
3 d2dkta2 g.93.1.1 (A:82-137) RI 49.3 3.5 0.00026 31.6 1.9 24 155-178 23-46 (56)
4 d1vfya_ g.50.1.1 (A:) vps27p p 48.8 3.1 0.00023 32.2 1.6 24 154-177 7-32 (67)
5 d2dkta2 g.93.1.1 (A:82-137) RI 48.4 2.2 0.00016 32.7 0.6 41 152-192 2-46 (56)
6 d1wfka_ g.50.1.1 (A:) Zinc fin 42.9 5.6 0.00041 32.5 2.3 28 150-177 7-36 (88)
7 d2dmda2 g.37.1.1 (A:8-33) Zinc 41.8 2.8 0.0002 27.1 0.2 15 167-181 2-16 (26)
8 d1dvpa2 g.50.1.1 (A:149-220) H 41.2 5.8 0.00043 31.1 2.1 24 154-177 15-40 (72)
9 d1wv8a1 d.304.1.1 (A:2-72) Hyp 31.3 8 0.00058 30.7 1.4 16 565-580 5-20 (71)
10 d2pg3a1 c.26.2.1 (A:1-230) Que 28.0 4.8 0.00035 36.5 -0.6 24 153-178 183-206 (230)
11 d1y02a2 g.50.1.1 (A:20-70) Rif 21.8 15 0.0011 27.0 1.2 21 155-175 3-25 (51)
12 d2adra2 g.37.1.1 (A:131-161) A 21.0 11 0.0008 25.4 0.3 14 167-180 2-15 (31)
13 d1wila_ g.50.1.3 (A:) Hypothet 20.4 19 0.0013 29.5 1.6 32 145-176 8-39 (89)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=70.38 E-value=0.99 Score=34.65 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.3
Q ss_pred CCccccccccccccCCCccCccCCc
Q 005312 150 DDALFCTLCNAEVRRFSKHCRSCDK 174 (703)
Q Consensus 150 d~~~yC~~C~i~KP~RShHCrvCnr 174 (703)
-....|..|.+.-|+|+..|+.|+.
T Consensus 17 ~~k~ICrkC~AR~p~rAt~CRKCg~ 41 (56)
T d2ayja1 17 FLKKVCRKCGALNPIRATKCRRCHS 41 (56)
T ss_dssp CCCEEETTTCCEECTTCSSCTTTCC
T ss_pred hhhHHHhhccccCCccccccccCCC
Confidence 4677899999999999999998875
No 2
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.02 E-value=2.4 Score=32.59 Aligned_cols=27 Identities=26% Similarity=0.587 Sum_probs=19.3
Q ss_pred Ccccccccccc--ccCCCccCccCCceee
Q 005312 151 DALFCTLCNAE--VRRFSKHCRSCDKCVD 177 (703)
Q Consensus 151 ~~~yC~~C~i~--KP~RShHCrvCnrCVl 177 (703)
+..-|..|... .-.|-|||+.||+.|=
T Consensus 7 ~~~~C~~C~~~F~~~~rrHHCR~CG~v~C 35 (64)
T d1joca1 7 EVQNCMACGKGFSVTVRRHHCRQCGNIFC 35 (64)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred cCCcCcCcCCcccCCccccchhhhCCeec
Confidence 34558888663 3457899999999654
No 3
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.26 E-value=3.5 Score=31.56 Aligned_cols=24 Identities=25% Similarity=0.740 Sum_probs=14.7
Q ss_pred cccccccccCCCccCccCCceeeC
Q 005312 155 CTLCNAEVRRFSKHCRSCDKCVDG 178 (703)
Q Consensus 155 C~~C~i~KP~RShHCrvCnrCVlr 178 (703)
|..|++-....-.||..|+-|+..
T Consensus 23 CgiCRvG~~~~ffHC~~C~~C~~~ 46 (56)
T d2dkta2 23 CGICRIGPKEDFFHCLKCNLCLTT 46 (56)
T ss_dssp TTEEEESCGGGEEEETTTTEEEEG
T ss_pred CCceeecCCccccccCccccccCc
Confidence 444555555566677777777654
No 4
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=48.81 E-value=3.1 Score=32.22 Aligned_cols=24 Identities=29% Similarity=0.733 Sum_probs=17.8
Q ss_pred ccccccc--cccCCCccCccCCceee
Q 005312 154 FCTLCNA--EVRRFSKHCRSCDKCVD 177 (703)
Q Consensus 154 yC~~C~i--~KP~RShHCrvCnrCVl 177 (703)
-|..|+. -.-.|-|||+.||+-+=
T Consensus 7 ~C~~C~~~F~~~~rkhhCr~CG~~fC 32 (67)
T d1vfya_ 7 ACMICSKKFSLLNRKHHCRSCGGVFC 32 (67)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred ccccCCCcccCcccccccccCCCEec
Confidence 3888876 33468899999998654
No 5
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=48.38 E-value=2.2 Score=32.71 Aligned_cols=41 Identities=29% Similarity=0.711 Sum_probs=32.0
Q ss_pred cccccccccccc-CCCccCccCCceeeCCC---cccccccccccc
Q 005312 152 ALFCTLCNAEVR-RFSKHCRSCDKCVDGFD---HHCRWLNNCVGH 192 (703)
Q Consensus 152 ~~yC~~C~i~KP-~RShHCrvCnrCVlrfD---HHCPWLnNCIG~ 192 (703)
..||..|+.+-- ....||..||.|-.+-. -||.--|.|+..
T Consensus 2 ~YfC~iC~l~dddk~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~~ 46 (56)
T d2dkta2 2 EYYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTT 46 (56)
T ss_dssp SEECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred ceECCcCCcccCCCCcccCCCCCceeecCCccccccCccccccCc
Confidence 358999998743 34689999999987632 499999999865
No 6
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=42.87 E-value=5.6 Score=32.46 Aligned_cols=28 Identities=14% Similarity=0.370 Sum_probs=20.6
Q ss_pred CCcccccccccc--ccCCCccCccCCceee
Q 005312 150 DDALFCTLCNAE--VRRFSKHCRSCDKCVD 177 (703)
Q Consensus 150 d~~~yC~~C~i~--KP~RShHCrvCnrCVl 177 (703)
+....|..|+.. ...|-|||+.|++.+-
T Consensus 7 ~~~s~C~~C~~~Fs~~~rrhhCr~CG~vfC 36 (88)
T d1wfka_ 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFC 36 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEE
T ss_pred cccCcCcccCchhccccccccccccChhhC
Confidence 345568889873 3568899999999644
No 7
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.82 E-value=2.8 Score=27.07 Aligned_cols=15 Identities=33% Similarity=0.888 Sum_probs=12.4
Q ss_pred ccCccCCceeeCCCc
Q 005312 167 KHCRSCDKCVDGFDH 181 (703)
Q Consensus 167 hHCrvCnrCVlrfDH 181 (703)
|.|.+|++|..+-|.
T Consensus 2 hkc~~c~kcfsrkdk 16 (26)
T d2dmda2 2 HKCEVCGKCFSRKDK 16 (26)
T ss_dssp CCBTTTTBCCCCHHH
T ss_pred CccchhhhHhcchhH
Confidence 679999999888763
No 8
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=41.21 E-value=5.8 Score=31.08 Aligned_cols=24 Identities=29% Similarity=0.769 Sum_probs=17.9
Q ss_pred cccccccc--ccCCCccCccCCceee
Q 005312 154 FCTLCNAE--VRRFSKHCRSCDKCVD 177 (703)
Q Consensus 154 yC~~C~i~--KP~RShHCrvCnrCVl 177 (703)
.|..|+.. .-.|-|||+.|++.+-
T Consensus 15 ~C~~C~~~F~~~~rrhhCr~CG~~~C 40 (72)
T d1dvpa2 15 VCHRCRVEFTFTNRKHHCRNCGQVFC 40 (72)
T ss_dssp BCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred ccccCCCcccCccccccccccCCeeC
Confidence 48888763 3468899999999654
No 9
>d1wv8a1 d.304.1.1 (A:2-72) Hypothetical protein TTHA1013 {Thermus thermophilus [TaxId: 274]}
Probab=31.28 E-value=8 Score=30.70 Aligned_cols=16 Identities=38% Similarity=0.785 Sum_probs=13.3
Q ss_pred cceeeccCCCceeeec
Q 005312 565 TSVVWDQEAGRYVSVP 580 (703)
Q Consensus 565 ~sv~wd~~agr~vs~~ 580 (703)
...+||.|||-+|--.
T Consensus 5 V~a~WD~EAgVWva~s 20 (71)
T d1wv8a1 5 VQALWDGEAGVWVAES 20 (71)
T ss_dssp EEEEEETTTTEEEEEC
T ss_pred EEEEEcccCCEEEEEc
Confidence 4679999999999654
No 10
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=28.03 E-value=4.8 Score=36.48 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=18.5
Q ss_pred cccccccccccCCCccCccCCceeeC
Q 005312 153 LFCTLCNAEVRRFSKHCRSCDKCVDG 178 (703)
Q Consensus 153 ~yC~~C~i~KP~RShHCrvCnrCVlr 178 (703)
.....| +++.+.+||-.|..|++|
T Consensus 183 ~~T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 183 YHTLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp HHCCCC--TTSCCTTTTSCSHHHHHH
T ss_pred hccCCC--CCCCCCCCCCCCHhHHHH
Confidence 334556 567788999999999887
No 11
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.75 E-value=15 Score=26.97 Aligned_cols=21 Identities=29% Similarity=0.675 Sum_probs=13.9
Q ss_pred ccccccc--ccCCCccCccCCce
Q 005312 155 CTLCNAE--VRRFSKHCRSCDKC 175 (703)
Q Consensus 155 C~~C~i~--KP~RShHCrvCnrC 175 (703)
|..|+.. .-.|-|||+.||+-
T Consensus 3 C~~C~~~F~~~~rkhhCr~CG~~ 25 (51)
T d1y02a2 3 CKSCGAHFANTARKQTCLDCKKN 25 (51)
T ss_dssp CTTTCCCCSSGGGCEECTTTCCE
T ss_pred ccccCCcccCCccCcccccCCcc
Confidence 5555442 23477999999984
No 12
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=20.98 E-value=11 Score=25.39 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=12.3
Q ss_pred ccCccCCceeeCCC
Q 005312 167 KHCRSCDKCVDGFD 180 (703)
Q Consensus 167 hHCrvCnrCVlrfD 180 (703)
.+|..|+||..+.|
T Consensus 2 f~C~~C~R~FaRrD 15 (31)
T d2adra2 2 YPCGLCNRAFTRRD 15 (31)
T ss_dssp EECTTTCCEESSHH
T ss_pred cccccccchhhHHH
Confidence 47999999999987
No 13
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.41 E-value=19 Score=29.51 Aligned_cols=32 Identities=16% Similarity=0.372 Sum_probs=24.9
Q ss_pred hcCCCCCccccccccccccCCCccCccCCcee
Q 005312 145 QQGNGDDALFCTLCNAEVRRFSKHCRSCDKCV 176 (703)
Q Consensus 145 ~~~~~d~~~yC~~C~i~KP~RShHCrvCnrCV 176 (703)
+.........|..|..+...--.-||+|.|+.
T Consensus 8 ~re~v~~D~mC~vC~v~t~~~l~pCRvCtRv~ 39 (89)
T d1wila_ 8 PREPVVNDEMCDVCEVWTAESLFPCRVCTRVF 39 (89)
T ss_dssp SCCCCCCSCCCTTTCCCCSSCCSSCSSSSSCC
T ss_pred cccCCCcCccccccCcccccceecceeecchh
Confidence 33344555679999999888888999999973
Done!