Your job contains 1 sequence.
>005313
MAMAATATATSASVRYAPEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMMAPPK
SSSVPVSSSVQVQQFSQGQRHGYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARGGPVQS
HNIPNGTASVGVGQGGSSTRGHGSSVGGISISSEAYRRRHEVTVSGDEVPPPFMSFDATG
FPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCR
NDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIV
VATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT
WPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGS
KIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAAR
GLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGVAYTFFGDQDSRYASDLIKLLEGA
KQQVPRELRDMASRGGGMGRPRRWAPTSSGRDGGRGGRNDSGYGGRGGRGFSGSSNRGDH
DSRDRARYNDGYRGRSSSRSPDRAPSGRGRSPVRSFHQAMMERGRSSPTPQHKSPFRERS
RSPLGGRRNFGNSFDDQLGSRRLSGGRDDGYGDEEEEGMIRPE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005313
(703 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2222617 - symbol:AT5G14610 species:3702 "Arabi... 1634 3.5e-216 3
TAIR|locus:2084178 - symbol:DRH1 "DEAD box RNA helicase 1... 2037 2.4e-212 2
TAIR|locus:2081061 - symbol:AT3G06480 species:3702 "Arabi... 1632 3.6e-191 3
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 1101 3.3e-115 2
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 1115 6.9e-115 2
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 1106 3.8e-114 2
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 1102 9.9e-114 2
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 1099 2.6e-111 1
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 1090 2.3e-110 1
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli... 1047 3.4e-109 2
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 1075 9.0e-109 1
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 1066 8.1e-108 1
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 1065 1.0e-107 1
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 1044 1.3e-107 2
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 1050 4.0e-106 1
WB|WBGene00010260 - symbol:F58E10.3 species:6239 "Caenorh... 997 1.0e-105 3
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 1044 1.7e-105 1
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 1044 1.7e-105 1
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 1044 1.7e-105 1
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 1044 1.7e-105 1
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 1044 1.7e-105 1
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 1044 1.7e-105 1
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala... 1043 2.2e-105 1
UNIPROTKB|F1MBQ8 - symbol:DDX5 "Uncharacterized protein" ... 1037 9.5e-105 1
UNIPROTKB|F1PEA6 - symbol:DDX5 "Uncharacterized protein" ... 1037 9.5e-105 1
UNIPROTKB|J3KTA4 - symbol:DDX5 "Probable ATP-dependent RN... 1037 9.5e-105 1
UNIPROTKB|P17844 - symbol:DDX5 "Probable ATP-dependent RN... 1037 9.5e-105 1
UNIPROTKB|Q5R4I9 - symbol:DDX5 "Probable ATP-dependent RN... 1037 9.5e-105 1
MGI|MGI:105037 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box ... 1034 2.0e-104 1
RGD|619906 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box heli... 1034 2.0e-104 1
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 1033 2.5e-104 1
UNIPROTKB|A5A6J2 - symbol:DDX5 "Probable ATP-dependent RN... 1030 5.3e-104 1
UNIPROTKB|Q4R6M5 - symbol:DDX5 "Probable ATP-dependent RN... 1030 5.3e-104 1
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ... 1028 8.6e-104 1
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ... 1028 8.6e-104 1
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 999 1.0e-100 1
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 965 3.7e-99 2
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 928 3.4e-93 1
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 928 3.4e-93 1
UNIPROTKB|I3LHW0 - symbol:I3LHW0 "Uncharacterized protein... 848 2.0e-91 3
UNIPROTKB|E9PT29 - symbol:Ddx17 "Protein Ddx17" species:1... 885 8.0e-91 2
UNIPROTKB|F1SQ03 - symbol:LOC100524536 "Uncharacterized p... 848 1.8e-90 3
FB|FBgn0037549 - symbol:CG7878 species:7227 "Drosophila m... 860 4.4e-90 2
TAIR|locus:2076351 - symbol:AT3G58510 species:3702 "Arabi... 822 5.6e-88 2
TAIR|locus:2076436 - symbol:AT3G58570 species:3702 "Arabi... 871 3.7e-87 1
TAIR|locus:2041549 - symbol:AT2G42520 species:3702 "Arabi... 844 5.0e-87 2
SGD|S000003046 - symbol:DBP3 "RNA-Dependent ATPase, membe... 866 1.3e-86 1
UNIPROTKB|B4DLW8 - symbol:DDX5 "Probable ATP-dependent RN... 836 1.7e-86 2
UNIPROTKB|G3MYF0 - symbol:LOC100300937 "Uncharacterized p... 861 4.3e-86 1
UNIPROTKB|E1BII7 - symbol:DDX43 "Uncharacterized protein"... 857 1.1e-85 1
UNIPROTKB|F1S0I6 - symbol:DDX43 "Uncharacterized protein"... 847 1.3e-84 1
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R... 842 4.4e-84 1
SGD|S000006040 - symbol:DBP1 "Putative ATP-dependent RNA ... 841 5.6e-84 1
ASPGD|ASPL0000077157 - symbol:AN10557 species:162425 "Eme... 811 7.3e-84 2
ZFIN|ZDB-GENE-080204-77 - symbol:ddx43 "DEAD (Asp-Glu-Ala... 829 1.0e-82 1
UNIPROTKB|Q86TM3 - symbol:DDX53 "Probable ATP-dependent R... 827 1.7e-82 1
CGD|CAL0004832 - symbol:orf19.7392 species:5476 "Candida ... 799 2.2e-82 2
GENEDB_PFALCIPARUM|PFL1310c - symbol:PFL1310c "ATP-depend... 695 2.8e-82 2
UNIPROTKB|F1NVJ6 - symbol:DDX43 "Uncharacterized protein"... 824 3.6e-82 1
SGD|S000005730 - symbol:DED1 "ATP-dependent DEAD (Asp-Glu... 809 1.4e-80 1
ZFIN|ZDB-GENE-050706-53 - symbol:ddx42 "DEAD (Asp-Glu-Ala... 805 3.7e-80 1
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi... 800 1.2e-79 1
CGD|CAL0005460 - symbol:DBP3 species:5476 "Candida albica... 799 1.6e-79 1
UNIPROTKB|F1NQ09 - symbol:DDX43 "Uncharacterized protein"... 795 4.2e-79 1
ZFIN|ZDB-GENE-980526-150 - symbol:pl10 "pl10" species:795... 672 5.0e-79 3
UNIPROTKB|E1BJD2 - symbol:DDX42 "Uncharacterized protein"... 794 5.4e-79 1
FB|FBgn0036104 - symbol:CG6418 species:7227 "Drosophila m... 793 6.8e-79 1
UNIPROTKB|E2RFF1 - symbol:DDX42 "Uncharacterized protein"... 790 1.4e-78 1
UNIPROTKB|Q86XP3 - symbol:DDX42 "ATP-dependent RNA helica... 790 1.4e-78 1
UNIPROTKB|Q5R7D1 - symbol:DDX42 "ATP-dependent RNA helica... 790 1.4e-78 1
MGI|MGI:1919297 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) bo... 789 1.8e-78 1
TAIR|locus:2034481 - symbol:STRS1 "STRESS RESPONSE SUPPRE... 788 2.3e-78 1
TAIR|locus:2037416 - symbol:RCF1 "regulator of CBF gene e... 791 3.1e-78 1
UNIPROTKB|F1RSJ7 - symbol:DDX42 "Uncharacterized protein"... 786 3.8e-78 1
RGD|1304909 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box po... 786 3.8e-78 1
DICTYBASE|DDB_G0288501 - symbol:ddx42 "DEAD/DEAH box heli... 783 7.9e-78 1
UNIPROTKB|Q5F485 - symbol:DDX42 "ATP-dependent RNA helica... 783 7.9e-78 1
UNIPROTKB|E2RRQ7 - symbol:DDX3X "Uncharacterized protein"... 762 9.5e-78 2
UNIPROTKB|F1RX16 - symbol:DDX3X "Uncharacterized protein"... 762 9.5e-78 2
UNIPROTKB|F1NJ40 - symbol:DDX42 "ATP-dependent RNA helica... 782 1.0e-77 1
UNIPROTKB|F1P0H1 - symbol:DDX42 "ATP-dependent RNA helica... 782 1.0e-77 1
MGI|MGI:103064 - symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/Hi... 761 1.2e-77 2
RGD|1564771 - symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box po... 761 1.2e-77 2
UNIPROTKB|G5E631 - symbol:DDX3X "Uncharacterized protein"... 759 2.0e-77 2
UNIPROTKB|J9P0V9 - symbol:DDX3X "Uncharacterized protein"... 759 2.0e-77 2
UNIPROTKB|O00571 - symbol:DDX3X "ATP-dependent RNA helica... 759 2.0e-77 2
DICTYBASE|DDB_G0283661 - symbol:ddx3 "DEAD/DEAH box helic... 734 1.1e-76 2
ZFIN|ZDB-GENE-030131-1565 - symbol:ddx3 "DEAD (Asp-Glu-Al... 681 1.1e-76 2
POMBASE|SPBC17D1.06 - symbol:dbp3 "ATP-dependent RNA heli... 770 1.9e-76 1
UNIPROTKB|D3IVZ2 - symbol:DDX3Y "Uncharacterized protein"... 767 3.9e-76 1
UNIPROTKB|B4DXX7 - symbol:DDX3Y "Uncharacterized protein"... 767 3.9e-76 1
UNIPROTKB|O15523 - symbol:DDX3Y "ATP-dependent RNA helica... 767 3.9e-76 1
MGI|MGI:91842 - symbol:D1Pas1 "DNA segment, Chr 1, Pasteu... 767 3.9e-76 1
RGD|1309586 - symbol:RGD1309586 "similar to probable ATP-... 767 3.9e-76 1
DICTYBASE|DDB_G0281925 - symbol:DDB_G0281925 "DEAD/DEAH b... 766 5.0e-76 1
UNIPROTKB|F1NIX1 - symbol:DDX3X "Uncharacterized protein"... 765 6.3e-76 1
FB|FBgn0263231 - symbol:bel "belle" species:7227 "Drosoph... 763 1.0e-75 1
UNIPROTKB|E1BSC0 - symbol:DDX46 "Uncharacterized protein"... 757 4.5e-75 1
UNIPROTKB|F1NIX2 - symbol:DDX3X "Uncharacterized protein"... 756 5.7e-75 1
MGI|MGI:1349406 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) bo... 756 5.7e-75 1
WARNING: Descriptions of 893 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 1634 (580.3 bits), Expect = 3.5e-216, Sum P(3) = 3.5e-216
Identities = 315/395 (79%), Positives = 355/395 (89%)
Query: 171 PPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLL 230
PP F++ P R V++AGFS+P+PIQAQSWPIA+Q+RDIVAIAKTGSGKTLGYL+
Sbjct: 226 PPAAGFNSYLVLPANGRMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLI 285
Query: 231 PGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 290
PGF+HL+R ND R+GPT+LVLSPTRELATQIQ EA+KFGKSS+ISC CLYGGAPKGPQL
Sbjct: 286 PGFMHLQRIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQL 345
Query: 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350
K+I+RGVDIVVATPGRLNDILEM+RISL+QVSYLVLDEADRMLDMGFEPQIRKIV EVP
Sbjct: 346 KEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPT 405
Query: 351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 410
+RQTLMYTATWP+EVRKIAADLLVNP QVNIGNVDEL ANK+ITQ IEVLAPM+KH RLE
Sbjct: 406 KRQTLMYTATWPKEVRKIAADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLE 465
Query: 411 QILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSP 470
QILRSQEPGSKII+FCSTK+MCDQLARNLTR FGAAAIHGDKSQ+ERD VLNQFR+GR+P
Sbjct: 466 QILRSQEPGSKIIIFCSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGRTP 525
Query: 471 VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYA 530
VLVATDVAARGLD+KDIRVVVNYDFP GVEDYVHRI +AYTFFGDQD+++A
Sbjct: 526 VLVATDVAARGLDVKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHA 585
Query: 531 SDLIKLLEGAKQQVPRELRDMASRGGG-MGRPRRW 564
SDLIK+LEGA Q+VP ++R+MA+RGGG M + RRW
Sbjct: 586 SDLIKILEGANQKVPPQVREMATRGGGGMNKFRRW 620
Score = 450 (163.5 bits), Expect = 3.5e-216, Sum P(3) = 3.5e-216
Identities = 91/179 (50%), Positives = 109/179 (60%)
Query: 14 VRYAPEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMMAPPKXXXXXXXXXXXXX 73
+RYAPEDP LPKPWKGLVD RTGYLYFWNPETNVTQYERPA APPK
Sbjct: 8 IRYAPEDPNLPKPWKGLVDSRTGYLYFWNPETNVTQYERPASSAPPKLAAIPVSSSVQTN 67
Query: 74 XXXXGQRHGYSPENEDNSYG-GRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGV 132
G++ ED+ YG G D G K ++G+R N++ R GP+ S++ +G +
Sbjct: 68 QQSSS---GFNSGKEDDKYGRGSD---GPKSDSGSRFNEAGRTGPISSNDAASGLGNAS- 120
Query: 133 GQGGSSTRXXXXXXXXXXXXXEAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHN 191
GGSS R EAY R+HE+TVSG +VPPP MSF+ATG P ELLRE N
Sbjct: 121 -SGGSSARGPPSSAAGNELSPEAYCRKHEITVSGGQVPPPLMSFEATGLPNELLRECPN 178
Score = 44 (20.5 bits), Expect = 3.5e-216, Sum P(3) = 3.5e-216
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 634 RSFHQAMMERGR 645
RSFH+AMM + R
Sbjct: 701 RSFHEAMMMKNR 712
Score = 37 (18.1 bits), Expect = 1.9e-215, Sum P(3) = 1.9e-215
Identities = 12/24 (50%), Positives = 12/24 (50%)
Query: 644 GRSSPTPQHKSPF----RERSRSP 663
GR S P S RERSRSP
Sbjct: 663 GRGSWAPSRDSGSSGWGRERSRSP 686
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 2037 (722.1 bits), Expect = 2.4e-212, Sum P(2) = 2.4e-212
Identities = 396/555 (71%), Positives = 446/555 (80%)
Query: 14 VRYAPEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMMAPPKXXXXXXXXXXXXX 73
VRYAPED TLPKPWKGL+D RTGYLYFWNPETNVTQYE+P PPK
Sbjct: 10 VRYAPEDHTLPKPWKGLIDDRTGYLYFWNPETNVTQYEKPTPSLPPKFSPAVSVSSSVQV 69
Query: 74 XXXXGQRHGYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVG 133
Q Y+P +D+ Y + GS E +R ++ R GP S+ NG G
Sbjct: 70 Q----QTDAYAPPKDDDKY-----SRGS--ERVSRFSEGGRSGPPYSNGAANGVGDSAYG 118
Query: 134 QGGSSTRXXXXXXXXXXXXX-EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNA 192
+STR EAY RRHE+TVSG +VPPP MSF+ATGFPPELLREV +A
Sbjct: 119 --AASTRVPLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSA 176
Query: 193 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 252
GFS+PTPIQAQSWPIA+Q RDIVAIAKTGSGKTLGYL+PGF+HL+R RND R+GPT+LVL
Sbjct: 177 GFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRMGPTILVL 236
Query: 253 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILE 312
SPTRELATQIQ+EAVKFG+SSRISCTCLYGGAPKGPQL+D++RG DIVVATPGRLNDILE
Sbjct: 237 SPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILE 296
Query: 313 MRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADL 372
MRRISL Q+SYLVLDEADRMLDMGFEPQIRKIVKE+P +RQTLMYTATWP+ VRKIAADL
Sbjct: 297 MRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADL 356
Query: 373 LVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMC 432
LVNP QVNIGNVDEL ANK+ITQHIEV+APM+K RRLEQILRSQEPGSK+I+FCSTK+MC
Sbjct: 357 LVNPAQVNIGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMC 416
Query: 433 DQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN 492
DQL RNLTRQFGAAAIHGDKSQ ERD VLNQFR+GR+PVLVATDVAARGLD+KDIR VVN
Sbjct: 417 DQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVN 476
Query: 493 YDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA 552
YDFP GVEDYVHRI A+TFFGDQDS++ASDLIK+LEGA Q+VP ++R+MA
Sbjct: 477 YDFPNGVEDYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
Query: 553 SRGGG-MGRPRRWAP 566
+RGGG M + RW P
Sbjct: 537 TRGGGGMNKFSRWGP 551
Score = 38 (18.4 bits), Expect = 2.4e-212, Sum P(2) = 2.4e-212
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 634 RSFHQAMMERGR 645
RSFH+ MM + R
Sbjct: 608 RSFHETMMMKHR 619
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 1632 (579.6 bits), Expect = 3.6e-191, Sum P(3) = 3.6e-191
Identities = 306/408 (75%), Positives = 358/408 (87%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E YR++HEVT +G+ +P P+++F+++G PPE+LRE+ +AGF SPTPIQAQ+WPIALQSRD
Sbjct: 415 EIYRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRD 474
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 273
IVAIAKTGSGKTLGYL+P FI L+ CRND R GPTVL+L+PTRELATQIQDEA++FG+SS
Sbjct: 475 IVAIAKTGSGKTLGYLIPAFILLRHCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSS 534
Query: 274 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 333
RISCTCLYGGAPKGPQLK+++RG DIVVATPGRLNDILEM+ I QVS LVLDEADRML
Sbjct: 535 RISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEMKMIDFQQVSLLVLDEADRML 594
Query: 334 DMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAI 393
DMGFEPQIRKIV E+P RRQTLMYTATWP+EVRKIA+DLLVNPVQVNIG VDELAANKAI
Sbjct: 595 DMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGRVDELAANKAI 654
Query: 394 TQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKS 453
TQ++EV+ M+K RRLEQILRSQE GSK+I+FCSTK++CD LAR++ R FGA IHGDK+
Sbjct: 655 TQYVEVVPQMEKERRLEQILRSQERGSKVIIFCSTKRLCDHLARSVGRHFGAVVIHGDKT 714
Query: 454 QSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXX 513
Q ERD+VLNQFR+G+S VL+ATDVAARGLDIKDIRVV+NYDFPTGVEDYVHRI
Sbjct: 715 QGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAG 774
Query: 514 XXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRP 561
VA+TFF +QD +YA DLIK+LEGA QQVP ++RD+A RGGG G P
Sbjct: 775 ATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIAMRGGGGGGP 822
Score = 215 (80.7 bits), Expect = 3.6e-191, Sum P(3) = 3.6e-191
Identities = 37/45 (82%), Positives = 41/45 (91%)
Query: 15 RYAPEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPAMMAPP 59
RYAPEDPTLP+PWKGL+DG TG LY+WNPETNVTQYERP+ APP
Sbjct: 14 RYAPEDPTLPQPWKGLIDGSTGILYYWNPETNVTQYERPS--APP 56
Score = 52 (23.4 bits), Expect = 4.2e-14, Sum P(2) = 4.2e-14
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 78 GQRHGYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARG--GPVQSHNIPNGTASVGVGQG 135
G+ G+ + +GGR G + ++ RG RG GP H G G G+
Sbjct: 866 GREGGFG--GREGGFGGRGGRFGMRDDSFGRGGNRGRGFTGPDAGHMNVGGRG--GFGRF 921
Query: 136 GSS 138
G++
Sbjct: 922 GNN 924
Score = 44 (20.5 bits), Expect = 3.6e-191, Sum P(3) = 3.6e-191
Identities = 16/58 (27%), Positives = 23/58 (39%)
Query: 86 ENEDNSYGGRDTNAGSKLEAGTRGNQ----SARGGPVQSHNIPNGTASVGVGQGGSST 139
EN S G D+ ++E RG Q +A ++ P A +GQ G T
Sbjct: 327 ENNLQSRPGNDSYVNMRMEVPVRGAQPLHPAAMPKDIRISGGPPTNADPAMGQTGHGT 384
Score = 39 (18.8 bits), Expect = 9.4e-13, Sum P(2) = 9.4e-13
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 347 EVPARRQTLMYTATWPREVR 366
EVP R ++ A P+++R
Sbjct: 345 EVPVRGAQPLHPAAMPKDIR 364
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 1101 (392.6 bits), Expect = 3.3e-115, Sum P(2) = 3.3e-115
Identities = 222/421 (52%), Positives = 297/421 (70%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
+ +R++ E+TV G +VP P +FD GFP +L EV GF PT IQ+Q WP+AL RD
Sbjct: 120 DEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLSEVKAQGFEKPTAIQSQGWPMALSGRD 179
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLK-RCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 272
+V IA+TGSGKTL Y LP +H+ + P GP VL+L+PTRELA QIQ E KFGKS
Sbjct: 180 VVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKS 239
Query: 273 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332
SRI TC+YGG PKGPQ++D+ RGV++ +ATPGRL D+LE R +L +V+YLVLDEADRM
Sbjct: 240 SRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRM 299
Query: 333 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKA 392
LDMGFEPQIRKI+ ++ RQT M++ATWP+EVR++A+D L N +QVNIG++D L+AN
Sbjct: 300 LDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNNYIQVNIGSMD-LSANHR 358
Query: 393 ITQHIEVLAPMDKHRR----LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFG--AA 446
ITQ +EV++ +K R LE+I+ ++ G+K +VF TK++ D++ R L RQ G A
Sbjct: 359 ITQIVEVISEFEKRDRMIKHLEKIMENR--GNKCLVFTGTKRIADEITRFL-RQDGWPAL 415
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
+IHGDK Q ERD+VLN+F+ G+SP++VATDVA+RG+D++DI V+NYD+P EDYVHRI
Sbjct: 416 SIHGDKQQQERDWVLNEFKTGKSPIMVATDVASRGIDVRDITHVINYDYPNNSEDYVHRI 475
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA--SRGGGMGRPR-R 563
A TFF +++ A DL+ +L AKQQ+ L +M S GGG G R
Sbjct: 476 GRTGRAGAKGTAITFFTTDNAKQARDLVTILSEAKQQIDPRLAEMVRYSGGGGHGGGYGR 535
Query: 564 W 564
W
Sbjct: 536 W 536
Score = 55 (24.4 bits), Expect = 3.3e-115, Sum P(2) = 3.3e-115
Identities = 18/59 (30%), Positives = 20/59 (33%)
Query: 78 GQRHGYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGG 136
G +GYS YGGR G +G G GG G G G GG
Sbjct: 22 GYSNGYS-NGHGGGYGGRGGGYGGGGGSGYGGGYG--GGGYGGGGYGRGGGGAGAGAGG 77
Score = 41 (19.5 bits), Expect = 9.9e-114, Sum P(2) = 9.9e-114
Identities = 15/59 (25%), Positives = 20/59 (33%)
Query: 78 GQRHGYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGG 136
G GY ++ + GG +N S G G + G G G G GG
Sbjct: 5 GGSGGYQRDSYRSGGGGGYSNGYSNGHGGGYGGRGGGYGGGGGSGYGGGYGGGGYGGGG 63
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 1115 (397.6 bits), Expect = 6.9e-115, Sum P(2) = 6.9e-115
Identities = 215/403 (53%), Positives = 288/403 (71%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E YR+ E+TV G ++P P SF GFP +L EV AGF+ PTPIQ+Q WP+A++ RD
Sbjct: 79 EEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRD 138
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKF 269
++ IA+TGSGKTL YLLP +H+ P L GP VLVL+PTRELA QIQ EA KF
Sbjct: 139 LIGIAETGSGKTLSYLLPAIVHVNA---QPMLAHGDGPIVLVLAPTRELAVQIQQEASKF 195
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
G SS+I TC+YGG PKGPQ++D+ +GV+IV+ATPGRL D++E +L +V+YLVLDEA
Sbjct: 196 GSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTYLVLDEA 255
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA 389
DRMLDMGF+PQIRKIV + RQTL ++ATWP+EV +++ L NP +V IG+ D L A
Sbjct: 256 DRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSD-LKA 314
Query: 390 NKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAI 448
N+AI Q ++V++ K+ +L ++L GS+I+VF TKK CDQ+ R L + A +I
Sbjct: 315 NRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQLRMDGWPALSI 374
Query: 449 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXX 508
HGDKSQ+ERD+VL++FR+G+SP++ ATDVAARGLD+KD++ V+NYDFP +EDYVHRI
Sbjct: 375 HGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGR 434
Query: 509 XXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDM 551
AYTFF ++R+A +L +L+ A Q+V EL M
Sbjct: 435 TGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELASM 477
Score = 38 (18.4 bits), Expect = 6.9e-115, Sum P(2) = 6.9e-115
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 78 GQRHGYSPENEDNSYGGRDTNAGSKLEAGTR----GNQSAR 114
G Y D+ +GG + S ++ GN+S R
Sbjct: 9 GDSTSYRDRRSDSGFGGTSSYGSSGSHTSSKKDNDGNESPR 49
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 1106 (394.4 bits), Expect = 3.8e-114, Sum P(2) = 3.8e-114
Identities = 235/494 (47%), Positives = 307/494 (62%)
Query: 78 GQRHGYSPENEDNSYGGRDTNAGS----KLEAGTRGNQSARGGPVQSHNIPNGTASVGVG 133
G R GYS YGG D + G + G RG P Q P
Sbjct: 27 GGRDGYSGGGRGGGYGGGDRDQGGYRGGRFSGGGRGGGRFNDAPRQELTAPQWDLEQLPK 86
Query: 134 QGGSSTRXXXXXXXXXXXXXEAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAG 193
+ E +R+ +E+TV G ++P P +FD GFP +L+EV + G
Sbjct: 87 FEKNFYSEHPDVAARSDRDIEQFRKENEMTVKGHDIPHPITTFDEAGFPDYVLQEVKDQG 146
Query: 194 FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTV 249
F PTPIQ Q WP+AL RD++ IA TGSGKTL Y LP +H+ P+L GP V
Sbjct: 147 FPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINA---QPQLQYGDGPIV 203
Query: 250 LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLND 309
LVL+PTRELA QIQ E KFGKSSRI TC+YGGAPKGPQ++D+ RGV+I +ATPGRL D
Sbjct: 204 LVLAPTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLID 263
Query: 310 ILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIA 369
+LE + +L +V+YLVLDEADRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EV+++
Sbjct: 264 MLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLT 323
Query: 370 ADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCS 427
D L +P+QV IG++ ELAA+ ITQ +EV+ K RL + L S E +KI+VF S
Sbjct: 324 RDYLNDPIQVTIGSL-ELAASHTITQLVEVIDEFSKRDRLVKHLESALNEKDNKILVFAS 382
Query: 428 TKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKD 486
TK+ CD++ L + A AIHGDK Q+ERD+VL++FR G++ ++VATDVAARG+D+K
Sbjct: 383 TKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVKG 442
Query: 487 IRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPR 546
I V+NYD P +EDYVHRI A +FF + +S+ DL K++ A Q VP
Sbjct: 443 ITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCKIMREANQTVPP 502
Query: 547 ELR--DMASRGGGM 558
EL+ D S G M
Sbjct: 503 ELQRFDRRSYGSHM 516
Score = 40 (19.1 bits), Expect = 3.8e-114, Sum P(2) = 3.8e-114
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 91 SYGGRDTNAGSKLEAGTRGNQSARGG 116
S GGRD +G G G +GG
Sbjct: 25 SRGGRDGYSGGGRGGGYGGGDRDQGG 50
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 1102 (393.0 bits), Expect = 9.9e-114, Sum P(2) = 9.9e-114
Identities = 218/420 (51%), Positives = 291/420 (69%)
Query: 156 YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
YR +++V G +VP P F FP +L + GF+ PTPIQAQ WP+AL+ RD++
Sbjct: 147 YRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLI 206
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRLG----PTVLVLSPTRELATQIQDEAVKFGK 271
IA+TGSGKTL YLLP +H+ PRLG P VL+L+PTRELA QIQ+E+ KFG
Sbjct: 207 GIAETGSGKTLAYLLPALVHVSA---QPRLGQDDGPIVLILAPTRELAVQIQEESRKFGL 263
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331
S + TC+YGGAPKGPQ++D+ RGV+IV+ATPGRL D+LE + +L +V+YLVLDEADR
Sbjct: 264 RSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADR 323
Query: 332 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANK 391
MLDMGFEPQIRKIV ++ RQTL+++ATWPREV +A L +P + IG+ D L AN+
Sbjct: 324 MLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKAIIGSTD-LKANQ 382
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 450
+I Q IE++ +K+ RL +L+ GSKI++F TK+ CDQ+ R L + A AIHG
Sbjct: 383 SINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHG 442
Query: 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXX 510
DK+QSERD VL +F++GRSP++ ATDVAARGLD+KDI+ VVNYDFP +EDY+HRI
Sbjct: 443 DKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIKCVVNYDFPNTLEDYIHRIGRTG 502
Query: 511 XXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPREL----RDMASRGGGMGRPRRWAP 566
+A+TFF ++++A +L+K+L+ A Q VP L R S GG G R + P
Sbjct: 503 RAGAKGMAFTFFTHDNAKFARELVKILQEAGQVVPPTLSALVRSSGSGYGGSGGGRNFRP 562
Score = 40 (19.1 bits), Expect = 9.9e-114, Sum P(2) = 9.9e-114
Identities = 22/66 (33%), Positives = 28/66 (42%)
Query: 78 GQRHGYSPENE-DNSYGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVG--Q 134
G +G SP DNS R + + G RGG Q + NG + G G +
Sbjct: 43 GGGYGPSPVMAGDNSGYNRYPSFQPPSGGFSVGRGGGRGGYGQ-YGDRNGGGNWGGGGGR 101
Query: 135 GGSSTR 140
GGSS R
Sbjct: 102 GGSSKR 107
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 1099 (391.9 bits), Expect = 2.6e-111, P = 2.6e-111
Identities = 215/416 (51%), Positives = 298/416 (71%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
+ +RR H + V G +VP P +FD GFP ++ EV GF +PT IQ+Q WP+AL RD
Sbjct: 105 DKFRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQGFPAPTAIQSQGWPMALSGRD 164
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLK-RCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 272
+V IA+TGSGKTL Y LP +H+ + P GP VL+L+PTRELA QIQ E KFGKS
Sbjct: 165 VVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLILAPTRELAVQIQAEISKFGKS 224
Query: 273 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332
SRI TC+YGG PKGPQ++D+ RGV++ +ATPGRL D+LE + +L +V+YLVLDEADRM
Sbjct: 225 SRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLESGKTNLRRVTYLVLDEADRM 284
Query: 333 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKA 392
LDMGFEPQIRKI+ ++ RQTLM++ATWP+EVR +AAD L + +QVNIG++D L+AN
Sbjct: 285 LDMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRNMAADFLQDFIQVNIGSLD-LSANHR 343
Query: 393 ITQHIEVLAPMDKH----RRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFG--AA 446
ITQ +EV++ +K R +E+++ ++ +KI++F TK++ D++ R L RQ G A
Sbjct: 344 ITQIVEVVSESEKRDRMIRHMEKVMDGKDSKNKILIFVGTKRVADEITRFL-RQDGWPAL 402
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
+IHGDK Q+ERD+VL+QF+ G+SP++VATDVA+RG+D+++I V+NYD+P EDY+HRI
Sbjct: 403 SIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVRNITHVLNYDYPNNSEDYIHRI 462
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPR 562
A TFF ++S+ A DL+ +L+ AKQ++ L +MA GGG G R
Sbjct: 463 GRTGRAGAKGTAITFFTTENSKQARDLLGVLQEAKQEIDPRLAEMARYGGGGGGGR 518
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 1090 (388.8 bits), Expect = 2.3e-110, P = 2.3e-110
Identities = 217/412 (52%), Positives = 286/412 (69%)
Query: 156 YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
+R+ +E+T+SG ++P P +FD GFP +L EV GF PT IQ Q WP+AL RD+V
Sbjct: 95 FRKENEMTISGHDIPKPITTFDEAGFPDYVLNEVKAEGFDKPTGIQCQGWPMALSGRDMV 154
Query: 216 AIAKTGSGKTLGYLLPGFIHLK-RCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274
IA TGSGKTL Y LPG +H+ + P GP VLVL+PTRELA QIQ E KFG SSR
Sbjct: 155 GIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVLAPTRELAVQIQTECSKFGHSSR 214
Query: 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD 334
I TC+YGG PK Q++D+ RG +IV+ATPGRL D+LE+ + +L +V+YLVLDEADRMLD
Sbjct: 215 IRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLD 274
Query: 335 MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAIT 394
MGFEPQIRKIV ++ RQTLM++ATWP+EV+++AAD L +P+QV +G++ EL+A+ IT
Sbjct: 275 MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAADYLNDPIQVQVGSL-ELSASHNIT 333
Query: 395 QHIEVLAPMDKHRRLEQILR--SQEPGSKIIVFCSTKKMCDQLARNLTRQFG--AAAIHG 450
Q +EV++ +K RL + L SQ+ K ++F STK+MCD + + L R+ G A AIHG
Sbjct: 334 QIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCDDITKYL-REDGWPALAIHG 392
Query: 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXX 510
DK Q ERD+VL +FR GRSP++VATDVAARG+D+K I V+NYD P +EDYVHRI
Sbjct: 393 DKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKGINYVINYDMPGNIEDYVHRIGRTG 452
Query: 511 XXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPR 562
A +FF +Q+ + LI ++ A Q +P EL R G G PR
Sbjct: 453 RAGATGTAISFFTEQNKGLGAKLISIMREANQNIPPELLKYDRRSYGGGHPR 504
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 1047 (373.6 bits), Expect = 3.4e-109, Sum P(2) = 3.4e-109
Identities = 210/417 (50%), Positives = 286/417 (68%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E +R ++TV G EVPPP M F FP L++E+ AGF +PTPIQ+Q+WPIAL+ RD
Sbjct: 364 EKFRASFQMTVKGREVPPPIMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRD 423
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKR---CRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270
I+ +AKTGSGKTL +LLP +H+ R D GP VLVL+PTRELA QIQ+E KFG
Sbjct: 424 IIGLAKTGSGKTLAFLLPSIVHINAQPVLREDD--GPIVLVLAPTRELALQIQEETNKFG 481
Query: 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 330
+S+IS TC+YGGA K Q+ + +GV+IV+ATPGRL DILE + +L +V+YLVLDEAD
Sbjct: 482 GTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDILESGKTNLRRVTYLVLDEAD 541
Query: 331 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAAN 390
RMLDMGFEPQIRKI+ ++ RQTLM++ATWP+EV+ +A D L + +QV+IG+ E+ AN
Sbjct: 542 RMLDMGFEPQIRKIISQIRPDRQTLMFSATWPKEVQALAHDFLTDHIQVHIGST-EITAN 600
Query: 391 KAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIH 449
+ Q +EV +K R+ L S K+IVF T+K D L R L F + IH
Sbjct: 601 HNVRQIVEVCQDFEKKERMLSFLGSVGRDEKVIVFAETRKGVDDLQRVLQFSGFKSIGIH 660
Query: 450 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXX 509
G+KSQ ERD+VL+QF+ G P+++ATDVA+RGLDIKDI+ VVNYDFP +E Y+HRI
Sbjct: 661 GNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKYVVNYDFPNTIEVYIHRIGRT 720
Query: 510 XXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPRRWAP 566
V+Y+ ++R A++LIK+L AKQ++P EL +++ ++++P
Sbjct: 721 ARAGASGVSYSLLTTDNARLANELIKVLTEAKQKIPIELSNLSVTPSTSSNTKKFSP 777
Score = 52 (23.4 bits), Expect = 3.4e-109, Sum P(2) = 3.4e-109
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 81 HGYSPENEDNSYG----GRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGG 136
+GY+ N +SYG G + ++GS +G+ G S+ GG S+N + S G +
Sbjct: 127 NGYNSSNSSSSYGASNNGYNNSSGSS-SSGSSG--SSNGG---SYNNSGSSNSNGYSKPT 180
Query: 137 SS 138
S+
Sbjct: 181 SN 182
Score = 46 (21.3 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 81 HGYSPENEDNSYGGR-DTNAGSKLEAGTRGNQSARGGPVQSHNIPNG 126
+GY+ + +S G +N GS +G+ N + P +++ NG
Sbjct: 143 NGYNNSSGSSSSGSSGSSNGGSYNNSGS-SNSNGYSKPTSNYSYSNG 188
Score = 46 (21.3 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 91 SYGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGGSST 139
SY G T+ G + G P+ S++ P+ +S G SS+
Sbjct: 228 SYNGGSTSYGYSTSGSSNGYGGYSQPPIPSYD-PSSVSSYGAVTPASSS 275
Score = 46 (21.3 bits), Expect = 1.5e-108, Sum P(2) = 1.5e-108
Identities = 14/62 (22%), Positives = 17/62 (27%)
Query: 40 FWNPETNVTQYERPAMMAPPKXXXXXXXXXXXXXXXX------XGQR-HGYSPENEDNSY 92
+ P TN + Y PP G +GYS N Y
Sbjct: 189 YTGPTTNYSSYSN-GYSTPPTSTSTSSSSTTTTTTTTPSTSYNGGSTSYGYSTSGSSNGY 247
Query: 93 GG 94
GG
Sbjct: 248 GG 249
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
Identities = 215/417 (51%), Positives = 292/417 (70%)
Query: 156 YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
YR+ E+ V G VP P +F+ GFP +L+EV GF +PTPIQ Q+WP+A+ RD+V
Sbjct: 104 YRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMV 163
Query: 216 AIAKTGSGKTLGYLLPGFIHLK-RCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274
I+ TGSGKTL Y LP +H+ + P GP VLVL+PTRELA QIQ E KFGKSSR
Sbjct: 164 GISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQQECTKFGKSSR 223
Query: 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD 334
I TC+YGG P+GPQ++D+ RGV+I +ATPGRL D+L+ + +L +V+YLVLDEADRMLD
Sbjct: 224 IRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLD 283
Query: 335 MGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAIT 394
MGFEPQIRKIV ++ RQT+M++ATWP+EV+++A D L + +QV +G++D LAA+ I
Sbjct: 284 MGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQVTVGSLD-LAASHNIK 342
Query: 395 QHIEVLAPMDKHRRL----EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFG--AAAI 448
Q +EV+ DK RL E++L+ ++ +K+++F TK++ D + R L RQ G A AI
Sbjct: 343 QIVEVVDNADKRARLGKDIEEVLKDRD--NKVLIFTGTKRVADDITRFL-RQDGWPALAI 399
Query: 449 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXX 508
HGDK+Q ERD+VLN+FR G+SP++VATDVA+RG+D+K I V NYDFP EDYVHRI
Sbjct: 400 HGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGR 459
Query: 509 XXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA--SRGGGMGRPRR 563
AYT+F +++ A +L+ +L AKQ + +L +MA S GG G RR
Sbjct: 460 TGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMARYSSGGRGGNYRR 516
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
Identities = 213/419 (50%), Positives = 290/419 (69%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E + +E+T+ GD+VP P + F+ GFP ++ E+ GF+ PT IQAQ WPIA+ RD
Sbjct: 137 ETFLTSNEITIKGDQVPTPSIEFEEGGFPDYVMNEIRKQGFAKPTAIQAQGWPIAMSGRD 196
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKF 269
+V +A+TGSGKTL Y+LP +H+ N PRL GP LVL+PTRELA QIQ A++F
Sbjct: 197 LVGVAQTGSGKTLAYVLPAVVHIN---NQPRLERGDGPIALVLAPTRELAQQIQQVAIEF 253
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
G ++ + TC++GGAPKG Q +D++RGV+IV+ATPGRL D LE SL + +YLVLDEA
Sbjct: 254 GSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEA 313
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA 389
DRMLDMGFEPQIRKI++++ RQ LM++ATWP+EVR++A + L N +QVNIG++ L+A
Sbjct: 314 DRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQVNIGSLS-LSA 372
Query: 390 NKAITQHIEVLAPMDKHRRLEQILR--SQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA 446
N I Q ++V +K +L ++L S E +K I+F TKK D++ RN++RQ + A
Sbjct: 373 NHNILQIVDVCDENEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRAC 432
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
AIHGDKSQ ERD+VL+ FR GR +LVATDVAARGLD+ D++ V+NYD+P+ EDYVHRI
Sbjct: 433 AIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRI 492
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA------SRGGGMG 559
AYT F ++ A+DLI++L A Q + +L +MA RGGGMG
Sbjct: 493 GRTGRSNNTGTAYTLFTHSNANKANDLIQVLREANQTINPKLMNMAMNGGYNKRGGGMG 551
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 1065 (380.0 bits), Expect = 1.0e-107, P = 1.0e-107
Identities = 214/418 (51%), Positives = 286/418 (68%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E YRR+ E+TV G P P +F FP ++ + F PT IQAQ +P+AL RD
Sbjct: 75 EEYRRKREITVRGSGCPKPVTNFHQAQFPQYVMDVLLQQNFKEPTAIQAQGFPLALSGRD 134
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKF 269
+V IA+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A +
Sbjct: 135 MVGIAQTGSGKTLAYLLPAIVHIN---HQPYLERGDGPICLVLAPTRELAQQVQQVAFDY 191
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
GKSSRI TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE+ + +L + +YLVLDEA
Sbjct: 192 GKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEVGKTNLRRCTYLVLDEA 251
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA 389
DRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + VQ+NIG + EL+A
Sbjct: 252 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINIGAL-ELSA 310
Query: 390 NKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA 446
N I Q ++V +K +L Q++ E +K I+F TKK CD+L R + R + A
Sbjct: 311 NHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKTIIFVETKKRCDELTRRMRRDGWPAM 370
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
IHGDKSQ ERD+VL +FR+G++P+L+ATDVA+RGLD++D++ V+NYD+P EDYVHRI
Sbjct: 371 CIHGDKSQPERDWVLTEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRI 430
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS--RGGGMGRPR 562
AYTFF + R A DL+++LE A+Q + +L + RGGG GR R
Sbjct: 431 GRTARSTNKGTAYTFFTPGNLRQARDLVRVLEEARQAINPKLLQLVDTGRGGGGGRMR 488
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 1044 (372.6 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 208/412 (50%), Positives = 285/412 (69%)
Query: 157 RRRHEVTVSGDEV-PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
RR+ E+TV G +V P P +F FP ++ + + F+ PTPIQ Q +P+AL RD+V
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGK 271
IA+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A +GK
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHIN---HQPYLERGDGPICLVLAPTRELAQQVQQVADDYGK 190
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331
SR+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEADR
Sbjct: 191 CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADR 250
Query: 332 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANK 391
MLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + Q+N+GN+ EL+AN
Sbjct: 251 MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANH 309
Query: 392 AITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAI 448
I Q ++V +K +L Q++ E +K I+F TK+ CD L R + R + A I
Sbjct: 310 NILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCI 369
Query: 449 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXX 508
HGDKSQ ERD+VLN+FR+G++P+L+ATDVA+RGLD++D++ V+NYD+P EDYVHRI
Sbjct: 370 HGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGR 429
Query: 509 XXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMG 559
AYTFF + + A +LIK+LE A Q + P+ ++ + RGGG G
Sbjct: 430 TARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 481
Score = 40 (19.1 bits), Expect = 1.3e-107, Sum P(2) = 1.3e-107
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 82 GYSPENEDNSYGGRDTNAGSKLEAGTRGNQSAR 114
G+ + D GG GS L GN R
Sbjct: 5 GFGDRDRDRDRGGFGARGGSGLPPKKFGNPGER 37
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 1050 (374.7 bits), Expect = 4.0e-106, P = 4.0e-106
Identities = 209/415 (50%), Positives = 286/415 (68%)
Query: 154 EAYRRRHEVTVSGDE-VPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSR 212
E RR+ E+T+ G E P P +F FP ++ + + F+ PTPIQ Q +P+AL R
Sbjct: 69 EELRRKKEITIRGMEGCPKPVFAFHQCSFPQYVMDALMDQNFTEPTPIQCQGFPLALSGR 128
Query: 213 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVK 268
D+V IA+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A
Sbjct: 129 DMVGIAQTGSGKTLAYLLPAIVHIN---HQPYLERGDGPICLVLAPTRELAQQVQQVADD 185
Query: 269 FGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDE 328
+GK SR+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDE
Sbjct: 186 YGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDE 245
Query: 329 ADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELA 388
ADRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + VQ+N+GN+ EL+
Sbjct: 246 ADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLQDYVQINVGNL-ELS 304
Query: 389 ANKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGA 445
AN I Q ++V +K +L Q++ E +K I+F TK+ CD L R + R + A
Sbjct: 305 ANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPA 364
Query: 446 AAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHR 505
IHGDKSQ ERD+VLN+FR+G++P+L+ATDVA+RGLD++D++ V+NYD+P EDYVHR
Sbjct: 365 MCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHR 424
Query: 506 IXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMG 559
I AYTFF + + A +LIK+LE A Q + P+ ++ + RGGG G
Sbjct: 425 IGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 479
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 997 (356.0 bits), Expect = 1.0e-105, Sum P(3) = 1.0e-105
Identities = 201/409 (49%), Positives = 276/409 (67%)
Query: 160 HEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAK 219
++VT+ G VP P F+ P ++ E+ F PT IQ+ SWPIA+ RDI++IAK
Sbjct: 116 NQVTLEGRGVPRPVFEFNEAPLPGQI-HELLYGKFQKPTVIQSISWPIAMSGRDIISIAK 174
Query: 220 TGSGKTLGYLLPGFIHL-KRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCT 278
TGSGKTL ++LP +H+ K+ GP VLVL PTRELA Q+Q+ ++ F S + T
Sbjct: 175 TGSGKTLAFMLPALVHITKQAHRQRGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKMT 234
Query: 279 CLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFE 338
CL+GGA KGPQ +D++RGVDIVVATPGRL D L+ ++ + SYLVLDEADRMLDMGFE
Sbjct: 235 CLFGGASKGPQARDLERGVDIVVATPGRLLDFLDNGTTNMKKCSYLVLDEADRMLDMGFE 294
Query: 339 PQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIE 398
PQI+KI+ ++ RQTLM++ATWP+EVR +A+D + +N+G++ ELAAN ITQ ++
Sbjct: 295 PQIKKIIGQIRPDRQTLMFSATWPKEVRALASDFQKDAAFLNVGSL-ELAANHNITQVVD 353
Query: 399 VLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQS 455
+L K +L ++L + K I+F TK+ D+L R + R + IHGDK+Q
Sbjct: 354 ILEEHAKQAKLMELLNHIMNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQG 413
Query: 456 ERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXX 515
ERD+VL +F+AG++P+++ATDVAARGLD+ DI+ V+NYD+P EDYVHRI
Sbjct: 414 ERDWVLQEFKAGKTPIMLATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKK 473
Query: 516 XVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR--GGGMGRPR 562
AYTFF ++ A DL+K+L+ AKQ VP+ LRDMA+R GG R R
Sbjct: 474 GTAYTFFTHTNASKAKDLLKVLDEAKQTVPQALRDMANRSYGGSNSRGR 522
Score = 46 (21.3 bits), Expect = 1.0e-105, Sum P(3) = 1.0e-105
Identities = 17/57 (29%), Positives = 20/57 (35%)
Query: 82 GYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGGSS 138
G S YGG G +G RG GG G G G+GGS+
Sbjct: 14 GSSGGGSRGGYGGGGRGGGGGGYSGGRGGGYGGGGGGGYGGGGYGGGGRGGGRGGSN 70
Score = 37 (18.1 bits), Expect = 1.0e-105, Sum P(3) = 1.0e-105
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 545 PRELR-DMASRGGGMGRPRRW 564
P+ R D GGG G RW
Sbjct: 541 PKRPRYDNGGYGGGSGGGGRW 561
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 208/412 (50%), Positives = 285/412 (69%)
Query: 157 RRRHEVTVSGDEV-PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
RR+ E+TV G +V P P +F FP ++ + + F+ PTPIQ Q +P+AL RD+V
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGK 271
IA+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A +GK
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHIN---HQPYLERGDGPICLVLAPTRELAQQVQQVADDYGK 190
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331
SR+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEADR
Sbjct: 191 CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADR 250
Query: 332 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANK 391
MLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + Q+N+GN+ EL+AN
Sbjct: 251 MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANH 309
Query: 392 AITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAI 448
I Q ++V +K +L Q++ E +K I+F TK+ CD L R + R + A I
Sbjct: 310 NILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCI 369
Query: 449 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXX 508
HGDKSQ ERD+VLN+FR+G++P+L+ATDVA+RGLD++D++ V+NYD+P EDYVHRI
Sbjct: 370 HGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGR 429
Query: 509 XXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMG 559
AYTFF + + A +LIK+LE A Q + P+ ++ + RGGG G
Sbjct: 430 TARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 481
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 208/412 (50%), Positives = 285/412 (69%)
Query: 157 RRRHEVTVSGDEV-PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
RR+ E+TV G +V P P +F FP ++ + + F+ PTPIQ Q +P+AL RD+V
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGK 271
IA+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A +GK
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHIN---HQPYLERGDGPICLVLAPTRELAQQVQQVADDYGK 190
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331
SR+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEADR
Sbjct: 191 CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADR 250
Query: 332 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANK 391
MLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + Q+N+GN+ EL+AN
Sbjct: 251 MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANH 309
Query: 392 AITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAI 448
I Q ++V +K +L Q++ E +K I+F TK+ CD L R + R + A I
Sbjct: 310 NILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCI 369
Query: 449 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXX 508
HGDKSQ ERD+VLN+FR+G++P+L+ATDVA+RGLD++D++ V+NYD+P EDYVHRI
Sbjct: 370 HGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGR 429
Query: 509 XXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMG 559
AYTFF + + A +LIK+LE A Q + P+ ++ + RGGG G
Sbjct: 430 TARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 481
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 208/412 (50%), Positives = 285/412 (69%)
Query: 157 RRRHEVTVSGDEV-PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
RR+ E+TV G +V P P +F FP ++ + + F+ PTPIQ Q +P+AL RD+V
Sbjct: 155 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 214
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGK 271
IA+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A +GK
Sbjct: 215 GIAQTGSGKTLAYLLPAIVHIN---HQPYLERGDGPICLVLAPTRELAQQVQQVADDYGK 271
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331
SR+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEADR
Sbjct: 272 CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADR 331
Query: 332 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANK 391
MLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + Q+N+GN+ EL+AN
Sbjct: 332 MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANH 390
Query: 392 AITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAI 448
I Q ++V +K +L Q++ E +K I+F TK+ CD L R + R + A I
Sbjct: 391 NILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCI 450
Query: 449 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXX 508
HGDKSQ ERD+VLN+FR+G++P+L+ATDVA+RGLD++D++ V+NYD+P EDYVHRI
Sbjct: 451 HGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGR 510
Query: 509 XXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMG 559
AYTFF + + A +LIK+LE A Q + P+ ++ + RGGG G
Sbjct: 511 TARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 562
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 208/412 (50%), Positives = 285/412 (69%)
Query: 157 RRRHEVTVSGDEV-PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
RR+ E+TV G +V P P +F FP ++ + + F+ PTPIQ Q +P+AL RD+V
Sbjct: 153 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 212
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGK 271
IA+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A +GK
Sbjct: 213 GIAQTGSGKTLAYLLPAIVHIN---HQPYLERGDGPICLVLAPTRELAQQVQQVADDYGK 269
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331
SR+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEADR
Sbjct: 270 CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADR 329
Query: 332 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANK 391
MLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + Q+N+GN+ EL+AN
Sbjct: 330 MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANH 388
Query: 392 AITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAI 448
I Q ++V +K +L Q++ E +K I+F TK+ CD L R + R + A I
Sbjct: 389 NILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCI 448
Query: 449 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXX 508
HGDKSQ ERD+VLN+FR+G++P+L+ATDVA+RGLD++D++ V+NYD+P EDYVHRI
Sbjct: 449 HGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGR 508
Query: 509 XXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMG 559
AYTFF + + A +LIK+LE A Q + P+ ++ + RGGG G
Sbjct: 509 TARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 560
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 208/412 (50%), Positives = 285/412 (69%)
Query: 157 RRRHEVTVSGDEV-PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
RR+ E+TV G +V P P +F FP ++ + + F+ PTPIQ Q +P+AL RD+V
Sbjct: 153 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 212
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGK 271
IA+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A +GK
Sbjct: 213 GIAQTGSGKTLAYLLPAIVHIN---HQPYLERGDGPICLVLAPTRELAQQVQQVADDYGK 269
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331
SR+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEADR
Sbjct: 270 CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADR 329
Query: 332 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANK 391
MLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + Q+N+GN+ EL+AN
Sbjct: 330 MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANH 388
Query: 392 AITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAI 448
I Q ++V +K +L Q++ E +K I+F TK+ CD L R + R + A I
Sbjct: 389 NILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCI 448
Query: 449 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXX 508
HGDKSQ ERD+VLN+FR+G++P+L+ATDVA+RGLD++D++ V+NYD+P EDYVHRI
Sbjct: 449 HGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGR 508
Query: 509 XXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMG 559
AYTFF + + A +LIK+LE A Q + P+ ++ + RGGG G
Sbjct: 509 TARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 560
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
Identities = 208/412 (50%), Positives = 285/412 (69%)
Query: 157 RRRHEVTVSGDEV-PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
RR+ E+TV G +V P P +F FP ++ + + F+ PTPIQ Q +P+AL RD+V
Sbjct: 155 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 214
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGK 271
IA+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A +GK
Sbjct: 215 GIAQTGSGKTLAYLLPAIVHIN---HQPYLERGDGPICLVLAPTRELAQQVQQVADDYGK 271
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331
SR+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEADR
Sbjct: 272 CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADR 331
Query: 332 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANK 391
MLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + Q+N+GN+ EL+AN
Sbjct: 332 MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANH 390
Query: 392 AITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAI 448
I Q ++V +K +L Q++ E +K I+F TK+ CD L R + R + A I
Sbjct: 391 NILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCI 450
Query: 449 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXX 508
HGDKSQ ERD+VLN+FR+G++P+L+ATDVA+RGLD++D++ V+NYD+P EDYVHRI
Sbjct: 451 HGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIGR 510
Query: 509 XXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMG 559
AYTFF + + A +LIK+LE A Q + P+ ++ + RGGG G
Sbjct: 511 TARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 562
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 1043 (372.2 bits), Expect = 2.2e-105, P = 2.2e-105
Identities = 203/417 (48%), Positives = 281/417 (67%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E YRR E+TV G + P P + F FP ++ + ++ PTPIQAQ WP+AL +D
Sbjct: 76 EHYRRSKEITVKGRDGPKPIVKFHEANFPKYVMDVITKQNWTDPTPIQAQGWPVALSGKD 135
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKF 269
+V IA+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A ++
Sbjct: 136 MVGIAQTGSGKTLSYLLPAIVHIN---HQPFLEHGDGPICLVLAPTRELAQQVQQVAAEY 192
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
GK+SRI TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEA
Sbjct: 193 GKASRIKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEA 252
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA 389
DRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L +Q+N+G + +L+A
Sbjct: 253 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYIQINVGAL-QLSA 311
Query: 390 NKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA 446
N I Q ++V +K +L ++L E +K I+F TK+ CD L R + R + A
Sbjct: 312 NHNILQIVDVCNDGEKEDKLIRLLEEIMSEKENKTIIFVETKRRCDDLTRRMRRDGWPAM 371
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
IHGDK+Q ERD+VLN+F+ G++P+L+ATDVA+RGLD++D++ V+N+D+P EDY+HRI
Sbjct: 372 GIHGDKNQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINFDYPNNSEDYIHRI 431
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPRR 563
AYTFF + + A DL+ +L A Q + +L MA GG R R
Sbjct: 432 GRTARSQKTGTAYTFFTPNNMKQAHDLVSVLREANQAINPKLIQMAEDRGGRSRGGR 488
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 202/417 (48%), Positives = 281/417 (67%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E YRR E+TV G P P ++F FP ++ + F+ PT IQAQ WP+AL D
Sbjct: 74 ETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 133
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKF 269
+V +A+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A ++
Sbjct: 134 MVGVAQTGSGKTLSYLLPAIVHIN---HQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 190
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
++ R+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEA
Sbjct: 191 CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 250
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA 389
DRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + + +NIG + EL+A
Sbjct: 251 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL-ELSA 309
Query: 390 NKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA 446
N I Q ++V ++K +L +++ E +K IVF TK+ CD+L R + R + A
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAM 369
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
IHGDKSQ ERD+VLN+F+ G++P+L+ATDVA+RGLD++D++ V+NYD+P EDY+HRI
Sbjct: 370 GIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI 429
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMGRPR 562
AYTFF + + SDLI +L A Q + P+ L+ + RG G R R
Sbjct: 430 GRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGR 486
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 202/417 (48%), Positives = 281/417 (67%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E YRR E+TV G P P ++F FP ++ + F+ PT IQAQ WP+AL D
Sbjct: 131 ETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 190
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKF 269
+V +A+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A ++
Sbjct: 191 MVGVAQTGSGKTLSYLLPAIVHIN---HQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 247
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
++ R+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEA
Sbjct: 248 CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 307
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA 389
DRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + + +NIG + EL+A
Sbjct: 308 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL-ELSA 366
Query: 390 NKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA 446
N I Q ++V ++K +L +++ E +K IVF TK+ CD+L R + R + A
Sbjct: 367 NHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAM 426
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
IHGDKSQ ERD+VLN+F+ G++P+L+ATDVA+RGLD++D++ V+NYD+P EDY+HRI
Sbjct: 427 GIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI 486
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMGRPR 562
AYTFF + + SDLI +L A Q + P+ L+ + RG G R R
Sbjct: 487 GRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGR 543
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 202/417 (48%), Positives = 281/417 (67%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E YRR E+TV G P P ++F FP ++ + F+ PT IQAQ WP+AL D
Sbjct: 74 ETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 133
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKF 269
+V +A+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A ++
Sbjct: 134 MVGVAQTGSGKTLSYLLPAIVHIN---HQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 190
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
++ R+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEA
Sbjct: 191 CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 250
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA 389
DRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + + +NIG + EL+A
Sbjct: 251 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL-ELSA 309
Query: 390 NKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA 446
N I Q ++V ++K +L +++ E +K IVF TK+ CD+L R + R + A
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAM 369
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
IHGDKSQ ERD+VLN+F+ G++P+L+ATDVA+RGLD++D++ V+NYD+P EDY+HRI
Sbjct: 370 GIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI 429
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMGRPR 562
AYTFF + + SDLI +L A Q + P+ L+ + RG G R R
Sbjct: 430 GRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGR 486
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 202/417 (48%), Positives = 281/417 (67%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E YRR E+TV G P P ++F FP ++ + F+ PT IQAQ WP+AL D
Sbjct: 74 ETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 133
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKF 269
+V +A+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A ++
Sbjct: 134 MVGVAQTGSGKTLSYLLPAIVHIN---HQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 190
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
++ R+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEA
Sbjct: 191 CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 250
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA 389
DRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + + +NIG + EL+A
Sbjct: 251 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL-ELSA 309
Query: 390 NKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA 446
N I Q ++V ++K +L +++ E +K IVF TK+ CD+L R + R + A
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAM 369
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
IHGDKSQ ERD+VLN+F+ G++P+L+ATDVA+RGLD++D++ V+NYD+P EDY+HRI
Sbjct: 370 GIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI 429
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMGRPR 562
AYTFF + + SDLI +L A Q + P+ L+ + RG G R R
Sbjct: 430 GRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGR 486
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 202/417 (48%), Positives = 281/417 (67%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E YRR E+TV G P P ++F FP ++ + F+ PT IQAQ WP+AL D
Sbjct: 74 ETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 133
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKF 269
+V +A+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A ++
Sbjct: 134 MVGVAQTGSGKTLSYLLPAIVHIN---HQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 190
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
++ R+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEA
Sbjct: 191 CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 250
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA 389
DRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + + +NIG + EL+A
Sbjct: 251 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL-ELSA 309
Query: 390 NKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA 446
N I Q ++V ++K +L +++ E +K IVF TK+ CD+L R + R + A
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAM 369
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
IHGDKSQ ERD+VLN+F+ G++P+L+ATDVA+RGLD++D++ V+NYD+P EDY+HRI
Sbjct: 370 GIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI 429
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMGRPR 562
AYTFF + + SDLI +L A Q + P+ L+ + RG G R R
Sbjct: 430 GRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGR 486
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
Identities = 201/417 (48%), Positives = 281/417 (67%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
+ YRR E+TV G P P ++F FP ++ + F+ PT IQAQ WP+AL D
Sbjct: 74 DTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 133
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKF 269
+V +A+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A ++
Sbjct: 134 MVGVAQTGSGKTLSYLLPAIVHIN---HQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 190
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
++ R+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEA
Sbjct: 191 CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 250
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA 389
DRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + + +NIG + EL+A
Sbjct: 251 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL-ELSA 309
Query: 390 NKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA 446
N I Q ++V ++K +L +++ E +K IVF TK+ CD+L R + R + A
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAM 369
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
IHGDKSQ ERD+VLN+F+ G++P+L+ATDVA+RGLD++D++ V+NYD+P EDY+HRI
Sbjct: 370 GIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI 429
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMGRPR 562
AYTFF + + SDLI +L A Q + P+ L+ + RG G R R
Sbjct: 430 GRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGR 486
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
Identities = 201/417 (48%), Positives = 281/417 (67%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
+ YRR E+TV G P P ++F FP ++ + F+ PT IQAQ WP+AL D
Sbjct: 74 DTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 133
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKF 269
+V +A+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A ++
Sbjct: 134 MVGVAQTGSGKTLSYLLPAIVHIN---HQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 190
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
++ R+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEA
Sbjct: 191 CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 250
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA 389
DRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + + +NIG + EL+A
Sbjct: 251 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL-ELSA 309
Query: 390 NKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA 446
N I Q ++V ++K +L +++ E +K IVF TK+ CD+L R + R + A
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAM 369
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
IHGDKSQ ERD+VLN+F+ G++P+L+ATDVA+RGLD++D++ V+NYD+P EDY+HRI
Sbjct: 370 GIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI 429
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMGRPR 562
AYTFF + + SDLI +L A Q + P+ L+ + RG G R R
Sbjct: 430 GRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGR 486
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
Identities = 208/414 (50%), Positives = 285/414 (68%)
Query: 157 RRRHEVTVSGDEV-PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
RR+ E+TV G +V P P +F FP ++ + + F+ PTPIQ Q +P+AL RD+V
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGK 271
IA+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A +GK
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHIN---HQPYLERGDGPICLVLAPTRELAQQVQQVADDYGK 190
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331
SR+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEADR
Sbjct: 191 CSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADR 250
Query: 332 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANK 391
MLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + Q+N+GN+ EL+AN
Sbjct: 251 MLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSANH 309
Query: 392 AITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAI 448
I Q ++V +K +L Q++ E +K I+F TK+ CD L R + R + A I
Sbjct: 310 NILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCI 369
Query: 449 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGL--DIKDIRVVVNYDFPTGVEDYVHRI 506
HGDKSQ ERD+VLN+FR+G++P+L+ATDVA+RGL D++D++ V+NYD+P EDYVHRI
Sbjct: 370 HGDKSQPERDWVLNEFRSGKAPILIATDVASRGLGFDVEDVKFVINYDYPNSSEDYVHRI 429
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMG 559
AYTFF + + A +LIK+LE A Q + P+ ++ + RGGG G
Sbjct: 430 GRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 483
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
Identities = 201/417 (48%), Positives = 280/417 (67%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E YRR E+TV G P P ++F FP ++ + F+ PT IQAQ WP+AL D
Sbjct: 74 ETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 133
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKF 269
+V +A+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A ++
Sbjct: 134 MVGVAQTGSGKTLSYLLPAIVHIN---HQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 190
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
++ R+ TC+YGGAPKGPQ++D++RGV+ +ATPGRL D LE + +L + +YLVLDEA
Sbjct: 191 CRACRLKSTCIYGGAPKGPQIRDLERGVENCIATPGRLIDFLECGKTNLRRTTYLVLDEA 250
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA 389
DRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + + +NIG + EL+A
Sbjct: 251 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL-ELSA 309
Query: 390 NKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA 446
N I Q ++V ++K +L +++ E +K IVF TK+ CD+L R + R + A
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAM 369
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
IHGDKSQ ERD+VLN+F+ G++P+L+ATDVA+RGLD++D++ V+NYD+P EDY+HRI
Sbjct: 370 GIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI 429
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMGRPR 562
AYTFF + + SDLI +L A Q + P+ L+ + RG G R R
Sbjct: 430 GRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGR 486
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
Identities = 201/417 (48%), Positives = 280/417 (67%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E YRR E+TV G P P ++F FP ++ + F+ PT IQAQ WP+AL D
Sbjct: 74 ETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 133
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKF 269
+V +A+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A ++
Sbjct: 134 MVGVAQTGSGKTLSYLLPAIVHIN---HQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 190
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
++ R+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEA
Sbjct: 191 CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 250
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA 389
DRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + + +NIG + EL+A
Sbjct: 251 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL-ELSA 309
Query: 390 NKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA 446
N I Q ++V ++K +L +++ E +K IVF TK+ CD+L R + R + A
Sbjct: 310 NHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAM 369
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
IHGDKSQ ER +VLN+F+ G++P+L+ATDVA+RGLD++D++ V+NYD+P EDY+HRI
Sbjct: 370 GIHGDKSQQERGWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI 429
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMGRPR 562
AYTFF + + SDLI +L A Q + P+ L+ + RG G R R
Sbjct: 430 GRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVEDRGSGRSRGR 486
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
Identities = 202/418 (48%), Positives = 278/418 (66%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E YR EVTV G P P ++F FP ++ + F+ PT IQAQ WP+AL D
Sbjct: 62 EQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLD 121
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKF 269
+V +A+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A ++
Sbjct: 122 MVGVAQTGSGKTLSYLLPAIVHIN---HQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 178
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
++ R+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEA
Sbjct: 179 SRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEA 238
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA 389
DRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L V +NIG + EL+A
Sbjct: 239 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGAL-ELSA 297
Query: 390 NKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA 446
N I Q ++V ++K +L +++ E +K IVF TK+ CD L R + R + A
Sbjct: 298 NHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAM 357
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
IHGDKSQ ERD+VLN+F+ G++P+L+ATDVA+RGLD++D++ V+NYD+P EDY+HRI
Sbjct: 358 GIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI 417
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMGRPRR 563
AYTFF + + +DLI +L A Q + P+ L+ + RG G R R
Sbjct: 418 GRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLLQLIEDRGSGRSRGDR 475
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
Identities = 202/418 (48%), Positives = 278/418 (66%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E YR EVTV G P P ++F FP ++ + F+ PT IQAQ WP+AL D
Sbjct: 70 EQYRSSKEVTVRGHNCPKPIINFYEANFPANVMEVIQRQNFTEPTAIQAQGWPVALSGLD 129
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKF 269
+V +A+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A ++
Sbjct: 130 MVGVAQTGSGKTLSYLLPAIVHIN---HQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 186
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
++ R+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEA
Sbjct: 187 SRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKTNLRRCTYLVLDEA 246
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA 389
DRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L V +NIG + EL+A
Sbjct: 247 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKEYVHINIGAL-ELSA 305
Query: 390 NKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA 446
N I Q ++V ++K +L +++ E +K IVF TK+ CD L R + R + A
Sbjct: 306 NHNILQIVDVCHDVEKDDKLIRLMEEIMSEKENKTIVFVETKRRCDDLTRKMRRDGWPAM 365
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
IHGDKSQ ERD+VLN+F+ G++P+L+ATDVA+RGLD++D++ V+NYD+P EDY+HRI
Sbjct: 366 GIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRI 425
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMGRPRR 563
AYTFF + + +DLI +L A Q + P+ L+ + RG G R R
Sbjct: 426 GRTARSTKTGTAYTFFTPNNIKQVNDLISVLREANQAINPKLLQLIEDRGSGRSRGDR 483
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
Identities = 206/420 (49%), Positives = 278/420 (66%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
+ YR E+TV G +VP P F P +++E+ G+ +PT IQAQ WPIA+ +
Sbjct: 262 QRYREEQEITVRG-QVPNPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSN 320
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL-GPTVLVLSPTRELATQIQDEAVKFGKS 272
V IAKTGSGKTLGY+LP +H+ + R GP LVL+PTRELA QIQ A +FG S
Sbjct: 321 FVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSS 380
Query: 273 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332
S + TC++GGAPKG Q++D+ RG +IV+ATPGRL D L +L + +YLVLDEADRM
Sbjct: 381 SYVRNTCVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRM 440
Query: 333 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKA 392
LDMGFEPQIRKIV ++ RQTLM++ATWP+EV+++A D L N +Q+NIG++ EL+AN
Sbjct: 441 LDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSL-ELSANHN 499
Query: 393 ITQHIEVLAPMDKHRRLEQILR-----SQEPGSKIIVFCSTKKMCDQLARNLTRQFGA-- 445
I Q ++V K +L+ +L S+ PG KII+F TK+ D L R + R FG
Sbjct: 500 IRQVVDVCDEFSKEEKLKTLLSDIYDTSESPG-KIIIFVETKRRVDNLVRFI-RSFGVRC 557
Query: 446 AAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHR 505
AIHGDKSQSERD+VL +FR+G+S +LVATDVAARGLD+ I+ V+N+D+P EDY+HR
Sbjct: 558 GAIHGDKSQSERDFVLREFRSGKSNILVATDVAARGLDVDGIKYVINFDYPQNSEDYIHR 617
Query: 506 IXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA--SR-GGGMGRPR 562
I ++ FF +++ A L+ +L A Q++ L ++A SR GG GR R
Sbjct: 618 IGRTGRSNTKGTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNSRYDGGGGRSR 677
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 965 (344.8 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 199/426 (46%), Positives = 283/426 (66%)
Query: 157 RRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
RR E+TVSG+E+P P +SF+ + P ++ E+ GF+ PT IQ+Q WPIAL RD+V
Sbjct: 220 RRELEITVSGNELPHPVVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVG 279
Query: 217 IAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGKS 272
IA+TGSGKTL Y+LP +H+ N P + GP LVL+PTRELA QIQ +G
Sbjct: 280 IAQTGSGKTLAYMLPAIVHIG---NQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHL 336
Query: 273 SR--ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 330
+ I TC++GG+ K PQ +D+DRGV++++ATPGRL D LE R +L + +YLVLDEAD
Sbjct: 337 CKPEIRHTCIFGGSSKVPQARDLDRGVEVIIATPGRLIDFLENRNTNLQRCTYLVLDEAD 396
Query: 331 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAAN 390
RMLDMGFEPQIRKI++++ RQ +M++ATWP+EV+ +A D L + +Q+NIG+++ L+AN
Sbjct: 397 RMLDMGFEPQIRKIIEQIRPDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMN-LSAN 455
Query: 391 KAITQHIEVLAPMDKHRRLEQILRSQEP-------GSKIIVFCSTKKMCDQLARNLTRQ- 442
I Q +E+ ++K +RL +L P G+KIIVF TK + + + + +
Sbjct: 456 HNIRQIVEICTEIEKPQRLVCLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEG 515
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ A +IHGDK+Q+ERD VL FR G+S +L+ATDVA+RGLD++D++ V+NYD+P E+Y
Sbjct: 516 YNATSIHGDKTQNERDSVLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENY 575
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA----SRGGGM 558
VHRI AYTFF +++ A +LI +LE A Q + L D+A S GG
Sbjct: 576 VHRIGRTGRCQQLGTAYTFFTPDNAKQARELISVLEEAGQTPSQALLDLARSMPSSGGYR 635
Query: 559 GRPRRW 564
G +RW
Sbjct: 636 GN-KRW 640
Score = 39 (18.8 bits), Expect = 3.7e-99, Sum P(2) = 3.7e-99
Identities = 15/47 (31%), Positives = 18/47 (38%)
Query: 92 YGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGGSS 138
YG + L G G S G P + N G A G G GG +
Sbjct: 75 YGVMTYGIQNGLGMGAAG--SGGGNPYRQQN---GVAFAGNGLGGGA 116
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
Identities = 191/413 (46%), Positives = 269/413 (65%)
Query: 157 RRRHEVTV-SGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
R +H++T+ G+ VP P +S + GFP +++ + N +PTPIQ Q WPIAL +D++
Sbjct: 95 RDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMI 154
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGK 271
A+TGSGKTL ++LP F+H+ P L GP VLVL+PTRELA QI+ E +KF
Sbjct: 155 GKAETGSGKTLAFILPAFVHILA---QPNLKYGDGPIVLVLAPTRELAEQIRQECIKFST 211
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331
S+I TC YGG PK Q+ + +GV I++A PGRL D+LE +L +V+YLVLDEAD+
Sbjct: 212 ESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADK 271
Query: 332 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVN-PVQVNIGNVDELAAN 390
MLDMGFE QIRKIV ++ RQTLM++ATWP+EV+ +A DL P+QVN+G++ L A
Sbjct: 272 MLDMGFELQIRKIVDQIRPDRQTLMWSATWPKEVQALAKDLCKEQPIQVNVGSLT-LTAC 330
Query: 391 KAITQHIEVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAI 448
++I Q I +L +K L+ +L R + +IIVF TKK D + + L A I
Sbjct: 331 RSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCI 390
Query: 449 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXX 508
HGDK Q ER +VLN+F+ G+SP+++ATDVA+RGLDIK+++ V+N+DFP +EDYVHRI
Sbjct: 391 HGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGR 450
Query: 509 XXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA-SRGGGMGR 560
++TF R A DL+K+L ++Q VP +L ++ S G R
Sbjct: 451 TGRAGSHGASFTFLTADKYRLAKDLVKILRESEQPVPPQLEKISYSMGNNQRR 503
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
Identities = 191/413 (46%), Positives = 269/413 (65%)
Query: 157 RRRHEVTV-SGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
R +H++T+ G+ VP P +S + GFP +++ + N +PTPIQ Q WPIAL +D++
Sbjct: 95 RDKHKITILEGENVPKPVVSINKIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMI 154
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGK 271
A+TGSGKTL ++LP F+H+ P L GP VLVL+PTRELA QI+ E +KF
Sbjct: 155 GKAETGSGKTLAFILPAFVHILA---QPNLKYGDGPIVLVLAPTRELAEQIRQECIKFST 211
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331
S+I TC YGG PK Q+ + +GV I++A PGRL D+LE +L +V+YLVLDEAD+
Sbjct: 212 ESKIRNTCAYGGVPKSGQIYALKQGVHILIACPGRLIDLLEQNVTNLMRVTYLVLDEADK 271
Query: 332 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVN-PVQVNIGNVDELAAN 390
MLDMGFE QIRKIV ++ RQTLM++ATWP+EV+ +A DL P+QVN+G++ L A
Sbjct: 272 MLDMGFELQIRKIVDQIRPDRQTLMWSATWPKEVQALAKDLCKEQPIQVNVGSLT-LTAC 330
Query: 391 KAITQHIEVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAI 448
++I Q I +L +K L+ +L R + +IIVF TKK D + + L A I
Sbjct: 331 RSIKQEIYLLEEHEKIGNLKSLLQRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCI 390
Query: 449 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXX 508
HGDK Q ER +VLN+F+ G+SP+++ATDVA+RGLDIK+++ V+N+DFP +EDYVHRI
Sbjct: 391 HGDKKQEERRWVLNEFKTGKSPIMIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGR 450
Query: 509 XXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA-SRGGGMGR 560
++TF R A DL+K+L ++Q VP +L ++ S G R
Sbjct: 451 TGRAGSHGASFTFLTADKYRLAKDLVKILRESEQPVPPQLEKISYSMGNNQRR 503
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 848 (303.6 bits), Expect = 2.0e-91, Sum P(3) = 2.0e-91
Identities = 168/390 (43%), Positives = 247/390 (63%)
Query: 169 VPPPFMSF-DATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLG 227
+P P F DA G PEL++ + AGF PTPIQ+Q+WPI LQ D++ IA+TG+GKTL
Sbjct: 209 IPNPICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLS 268
Query: 228 YLLPGFIHLKR--CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAP 285
YL+PGFIHL R GP +LVL+PTRELA Q+ E K+ + C+YGG
Sbjct: 269 YLMPGFIHLNSQPVSRGKRNGPGMLVLTPTRELALQVGAECSKYSYKG-LKSVCIYGGGN 327
Query: 286 KGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIV 345
+ Q++DI +GVDI++ATPGRLND+ ++L ++YLVLDEAD+MLD+GFE QI KI+
Sbjct: 328 RKGQIQDIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKIL 387
Query: 346 KEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDK 405
+V RQT+M +ATWP +R++A L P+ V +G +D L A + Q+I + +K
Sbjct: 388 LDVRPDRQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLD-LVAVDTVKQNIIITTEEEK 446
Query: 406 HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQF 464
++ L+S P K+IVF S K + D L+ +L+ Q ++HGD+ QS+R+ L+ F
Sbjct: 447 RSLFQEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDF 506
Query: 465 RAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGD 524
+ G+ +L+ATD+A+RGLD+ D+ V NY+FP +E+YVHR+ + T
Sbjct: 507 KTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQ 566
Query: 525 QDSRYASDLIKLLEGAKQQVPRELRDMASR 554
D + A +LI++L+ A Q +P +L MA +
Sbjct: 567 DDWKVAGELIEILQRANQSIPEDLLSMAEQ 596
Score = 55 (24.4 bits), Expect = 2.0e-91, Sum P(3) = 2.0e-91
Identities = 19/65 (29%), Positives = 27/65 (41%)
Query: 83 YSPEN---EDNSYGGRDTNAGSKLEAGTRGNQSARGG----PVQSHNIPNGTASVGVGQG 135
++PE E NS GRD + + T + R P I N A V +G+G
Sbjct: 1 WAPERKRAEPNSQHGRDGRGRGRGWSSTSSHVETRASGSREPPLCFKINNSMAGVVIGRG 60
Query: 136 GSSTR 140
GS +
Sbjct: 61 GSKIK 65
Score = 41 (19.5 bits), Expect = 2.0e-91, Sum P(3) = 2.0e-91
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 637 HQAMMERGRSSPTPQHKSPFRE 658
H+ E G+ TPQ K FRE
Sbjct: 600 HKQEKETGKKPRTPQEK--FRE 619
>UNIPROTKB|E9PT29 [details] [associations]
symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
Length = 651
Score = 885 (316.6 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 190/413 (46%), Positives = 267/413 (64%)
Query: 157 RRRHEVTVSGDEV-PPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
RR+ E+TV G +V P P +F FP ++ + + F+ PTPIQ Q +P+AL RD+V
Sbjct: 74 RRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMV 133
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEA-VKFG 270
IA+TGSGKTL YLLP +H+ + P L GP V VL L + + KF
Sbjct: 134 GIAQTGSGKTLAYLLPAIVHIN---HQPYLERGDGPIVSVLPFFSTLFSVYRGGTDFKF- 189
Query: 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 330
K S + C G + KG +L+ + + V+I +ATPGR+ D LE + +L + +YLVLDEAD
Sbjct: 190 KCSSLFWVCFLGQSLKGQRLEWLSQCVEICIATPGRI-DFLESGKTNLRRCTYLVLDEAD 248
Query: 331 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAAN 390
RMLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + Q+N+GN+ EL+AN
Sbjct: 249 RMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQINVGNL-ELSAN 307
Query: 391 KAITQHIEVLAPMDKHRRLEQILRS--QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAA 447
I Q ++V +K +L Q++ E +K I+F TK+ CD L R + R + A
Sbjct: 308 HNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMC 367
Query: 448 IHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIX 507
IHGDKSQ ERD+VLN+FR+G++P+L+ATDVA+RGLD++D++ V+NYD+P EDYVHRI
Sbjct: 368 IHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVEDVKFVINYDYPNSSEDYVHRIG 427
Query: 508 XXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV-PRELRDMASRGGGMG 559
AYTFF + + A +LIK+LE A Q + P+ ++ + RGGG G
Sbjct: 428 RTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQLVDHRGGGGG 480
Score = 40 (19.1 bits), Expect = 8.0e-91, Sum P(2) = 8.0e-91
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 82 GYSPENEDNSYGGRDTNAGSKLEAGTRGNQSAR 114
G+ + D GG GS L GN R
Sbjct: 5 GFGDRDRDRDRGGFGARGGSGLPPKKFGNPGER 37
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 848 (303.6 bits), Expect = 1.8e-90, Sum P(3) = 1.8e-90
Identities = 168/390 (43%), Positives = 247/390 (63%)
Query: 169 VPPPFMSF-DATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLG 227
+P P F DA G PEL++ + AGF PTPIQ+Q+WPI LQ D++ IA+TG+GKTL
Sbjct: 218 IPNPICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLS 277
Query: 228 YLLPGFIHLKR--CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAP 285
YL+PGFIHL R GP +LVL+PTRELA Q+ E K+ + C+YGG
Sbjct: 278 YLMPGFIHLNSQPVSRGKRNGPGMLVLTPTRELALQVGAECSKYSYKG-LKSVCIYGGGN 336
Query: 286 KGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIV 345
+ Q++DI +GVDI++ATPGRLND+ ++L ++YLVLDEAD+MLD+GFE QI KI+
Sbjct: 337 RKGQIQDIMKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDEADKMLDLGFEHQIMKIL 396
Query: 346 KEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDK 405
+V RQT+M +ATWP +R++A L P+ V +G +D L A + Q+I + +K
Sbjct: 397 LDVRPDRQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLD-LVAVDTVKQNIIITTEEEK 455
Query: 406 HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQF 464
++ L+S P K+IVF S K + D L+ +L+ Q ++HGD+ QS+R+ L+ F
Sbjct: 456 RSLFQEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALDDF 515
Query: 465 RAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGD 524
+ G+ +L+ATD+A+RGLD+ D+ V NY+FP +E+YVHR+ + T
Sbjct: 516 KTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLMTQ 575
Query: 525 QDSRYASDLIKLLEGAKQQVPRELRDMASR 554
D + A +LI++L+ A Q +P +L MA +
Sbjct: 576 DDWKVAGELIEILQRANQSIPEDLLSMAEQ 605
Score = 46 (21.3 bits), Expect = 1.8e-90, Sum P(3) = 1.8e-90
Identities = 15/57 (26%), Positives = 20/57 (35%)
Query: 85 PENEDNSYGGRDTNAG-SKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGGSSTR 140
P + GR G S + S P I N A V +G+GGS +
Sbjct: 17 PRASQHGRDGRGRGRGWSSTSSHVETRASGSREPPLCFKINNSMAGVVIGRGGSKIK 73
Score = 41 (19.5 bits), Expect = 1.8e-90, Sum P(3) = 1.8e-90
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 637 HQAMMERGRSSPTPQHKSPFRE 658
H+ E G+ TPQ K FRE
Sbjct: 609 HKQEKETGKKPRTPQEK--FRE 628
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 860 (307.8 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
Identities = 172/392 (43%), Positives = 255/392 (65%)
Query: 169 VPPPFMSFDATGFP-PELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLG 227
+P P +F+ P++L E+ GFS P+PIQ+Q+WPI LQ D++ IA+TG+GKTL
Sbjct: 277 IPNPVWTFEQCFAEYPDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLA 336
Query: 228 YLLPGFIHLKRCRNDPRL---GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGA 284
+LLPG IH + ++ PR G VLVL+PTRELA QI+ E K+ + C+YGG
Sbjct: 337 FLLPGMIHTEY-QSTPRGTRGGANVLVLAPTRELALQIEMEVKKYSFRG-MKAVCVYGGG 394
Query: 285 PKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKI 344
+ Q+ D++RG +I++ TPGRLND++ I ++ ++YLVLDEADRMLDMGFEPQIRK+
Sbjct: 395 NRNMQISDLERGAEIIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLDMGFEPQIRKV 454
Query: 345 VKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAP-M 403
+ ++ RQT+M +ATWP VR++A + NP+QV +G++D LAA ++ Q I+++ M
Sbjct: 455 MLDIRPDRQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLD-LAATHSVKQIIKLMEDDM 513
Query: 404 DKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLN 462
DK + +++ KII+FC K D L+ LT F IHG++ Q +R+ +
Sbjct: 514 DKFNTITSFVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIA 573
Query: 463 QFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFF 522
++G +LVATDVA+RGLDI+DI V+NYDFP +E+YVHR+ + +FF
Sbjct: 574 DIKSGVVRILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFF 633
Query: 523 GDQDSRYASDLIKLLEGAKQQVPRELRDMASR 554
+D A +LI++L+ A+Q+VP EL +MA R
Sbjct: 634 TREDWAMAKELIEILQEAEQEVPDELHNMARR 665
Score = 58 (25.5 bits), Expect = 4.4e-90, Sum P(2) = 4.4e-90
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 78 GQRHGYSPENEDNSYGGRDTNAGSKLEAGTRGNQ-SARGGPVQ-SHNIPNGTASVG--VG 133
G+ GY + D YGG + AG R ++ SA GG S ++ + VG +G
Sbjct: 50 GEGRGYRAKRND--YGGGRRDNRDNYGAGHRDSRDSAGGGGGDFSESLSIASEMVGKVIG 107
Query: 134 QGGSS 138
+GGS+
Sbjct: 108 RGGSN 112
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 822 (294.4 bits), Expect = 5.6e-88, Sum P(2) = 5.6e-88
Identities = 178/417 (42%), Positives = 253/417 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V SG +VPPP +F L + + PTP+Q + PI L RD++A A+TG
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTG 198
Query: 222 SGKTLGYLLP---GFI---HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275
SGKT + P G + H++R R + P ++LSPTRELA QI DEA KF + +
Sbjct: 199 SGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGV 258
Query: 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 335
YGG P QL++++RG DI+VATPGRLND+LE R+S+ + +L LDEADRMLDM
Sbjct: 259 KVVVAYGGTPIHQQLRELERGCDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 318
Query: 336 GFEPQIRKIVKEV--PAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANK 391
GFEPQIRKIV+++ P R RQT++++AT+P +++++AAD + N + + +G V ++
Sbjct: 319 GFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVG--SSTD 376
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQ----EPGSKIIVFCSTKKMCDQLARNLT-RQFGAA 446
ITQ +E + DK L +L +Q + S +VF TK+ D L L +F A
Sbjct: 377 LITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPAT 436
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
+IHGD++Q ER+ L F+ GR+P+LVATDVAARGLDI + VVN+D P ++DYVHRI
Sbjct: 437 SIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRI 496
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR---GGGMGR 560
+A FF + +++ A L +L++ A Q+VP L ASR GGG R
Sbjct: 497 GRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRYASRASFGGGKKR 553
Score = 76 (31.8 bits), Expect = 5.6e-88, Sum P(2) = 5.6e-88
Identities = 32/120 (26%), Positives = 45/120 (37%)
Query: 85 PENEDNSYGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGGSSTRXXXX 144
P+N+ YGG+ AGS+ + G A GG ++ G G G GG
Sbjct: 40 PQNDHAGYGGQP--AGSRWAPPSSGGGGASGGGYRNDG---GRTGYGYGAGGGGGGGGGW 94
Query: 145 XXXXXXXXXEAYRRRHEVTVSGD--EVPPPFMSFDATGFPPELLRE--VHNAGFSSPTPI 200
RR EV GD E+ P F + TG + + V +G P P+
Sbjct: 95 NNRSGGWD----RREREVNPFGDDAELEPVFTEQENTGINFDAYEDIPVETSGGDVPPPV 150
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
Identities = 207/507 (40%), Positives = 285/507 (56%)
Query: 84 SPENEDNS-YGGRDTNAGSKLEA-GTRGN-QSARGGPVQSHNIPNG------TASVGVGQ 134
SP N D YGG ++ G + + G RG+ RGGPV N +G T + G
Sbjct: 49 SPGNNDRGGYGGANSGYGGRGQGYGGRGSGYGGRGGPVGGWNARSGGWDRRDTETNPFGN 108
Query: 135 GGSSTRXXXXXXXXXXXXXEAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGF 194
G++ EAY + SGD VPPP +F L + +
Sbjct: 109 DGNADPAVNEQENTVINF-EAYEDI-PIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKY 166
Query: 195 SSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLP---GFI---HLKRCRNDPRLGPT 248
PTP+Q + PI RD++A A+TGSGKT + P G + H++R R + P
Sbjct: 167 VKPTPVQRNAIPILAAGRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPL 226
Query: 249 VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLN 308
++LSPTRELA QI DEA KF + + YGG P Q+++++RGVDI+VATPGRLN
Sbjct: 227 AVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLN 286
Query: 309 DILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV----PARRQTLMYTATWPRE 364
D+LE R+SL V +L LDEADRMLDMGFEPQIRKIV+++ P RQT++++AT+PRE
Sbjct: 287 DLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPRE 346
Query: 365 VRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQ-EPGSK-- 421
++++A+D L N + + +G V ++ I Q +E + DK L +L +Q E G++
Sbjct: 347 IQRLASDFLSNYIFLAVGRVG--SSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGK 404
Query: 422 ---IIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV 477
+VF TKK D L L F A IHGD+SQ ER+ L F+ GR+P+LVATDV
Sbjct: 405 QALTLVFVETKKGADSLENWLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDV 464
Query: 478 AARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLL 537
AARGLDI + VVN+D P ++DYVHRI +A FF D ++ A L +L+
Sbjct: 465 AARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELM 524
Query: 538 EGAKQQVPRELRDMASRGG-GMGRPRR 563
+ A Q+VP L ASR G G+ RR
Sbjct: 525 QEANQEVPDWLTRYASRASFGGGKNRR 551
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 844 (302.2 bits), Expect = 5.0e-87, Sum P(2) = 5.0e-87
Identities = 184/420 (43%), Positives = 257/420 (61%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
+ SGD VPPP +F L + + PTP+Q + PI L+ RD++A A+TG
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 222 SGKTLGYLLP---GFI---HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275
SGKT + P G + H++R R + P ++LSPTRELA+QI DEA KF + +
Sbjct: 207 SGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTGV 266
Query: 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 335
YGG P QL++++RGVDI+VATPGRLND+LE R+S+ + +L LDEADRMLDM
Sbjct: 267 KVVVAYGGTPINQQLRELERGVDILVATPGRLNDLLERARVSMQMIRFLALDEADRMLDM 326
Query: 336 GFEPQIRKIVKEV--PAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANK 391
GFEPQIRKIV+++ P R RQTL+++AT+PRE++++AAD L N + + +G V ++
Sbjct: 327 GFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAVGRVG--SSTD 384
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQ-EPGSK-----IIVFCSTKKMCDQLARNLT-RQFG 444
I Q +E + DK L +L +Q E G + +VF TK+ D L L F
Sbjct: 385 LIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLENWLCINGFP 444
Query: 445 AAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVH 504
A +IHGD++Q ER+ L F++GR+P+LVATDVAARGLDI + VVN+D P ++DYVH
Sbjct: 445 ATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVH 504
Query: 505 RIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGG-GMGRPRR 563
RI +A FF D ++ A L +L++ A Q+VP L ASR G G+ RR
Sbjct: 505 RIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEVPEWLTRYASRSSFGGGKNRR 564
Score = 45 (20.9 bits), Expect = 5.0e-87, Sum P(2) = 5.0e-87
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 115 GGPVQSHNIPNGTASVGVGQGG 136
GGP G + VGVG GG
Sbjct: 57 GGPPSGSRWAPGGSGVGVGGGG 78
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 179/403 (44%), Positives = 252/403 (62%)
Query: 154 EAYRRRHEVTV--SGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS 211
+ Y + +E+ V S D P +SFD + E+ F PTPIQA +WP L
Sbjct: 92 DEYFKENEIAVEDSLDLALRPLLSFDYLSLDSSIQAEISK--FPKPTPIQAVAWPYLLSG 149
Query: 212 RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271
+D+V +A+TGSGKT + +P HL + + G VLV+SPTRELA+QI D +
Sbjct: 150 KDVVGVAETGSGKTFAFGVPAISHLMN--DQKKRGIQVLVISPTRELASQIYDNLIVLTD 207
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331
+ C C+YGG PK Q + + +VVATPGRL D+L+ + L+QV+YLVLDEADR
Sbjct: 208 KVGMQCCCVYGGVPKDEQRIQLKKS-QVVVATPGRLLDLLQEGSVDLSQVNYLVLDEADR 266
Query: 332 MLDMGFEPQIRKIVKEVPA-RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAAN 390
ML+ GFE I+ I++E A +RQTLM+TATWP+EVR++A+ + NP++V+IGN D+L AN
Sbjct: 267 MLEKGFEEDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTAN 326
Query: 391 KAITQHIEVLAPMDKHRRLEQILRSQEPG----SKIIVFCSTKKMCDQLARNLTRQ-FGA 445
K ITQ +EV+ P K R+L ++L+ G K+++F KK ++ RNL +
Sbjct: 327 KRITQIVEVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNV 386
Query: 446 AAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHR 505
AAIHGD SQ +R LN+F++G+S +L+ATDVAARGLDI +++ V+N FP VEDYVHR
Sbjct: 387 AAIHGDLSQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHR 446
Query: 506 IXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPREL 548
I A+T F +Q+ A L+ +L GA Q VP +L
Sbjct: 447 IGRTGRAGQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDL 489
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 836 (299.3 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 161/321 (50%), Positives = 226/321 (70%)
Query: 246 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPG 305
GP LVL+PTRELA Q+Q A ++ ++ R+ TC+YGGAPKGPQ++D++RGV+I +ATPG
Sbjct: 88 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPG 147
Query: 306 RLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREV 365
RL D LE + +L + +YLVLDEADRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EV
Sbjct: 148 RLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEV 207
Query: 366 RKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRS--QEPGSKII 423
R++A D L + + +NIG + EL+AN I Q ++V ++K +L +++ E +K I
Sbjct: 208 RQLAEDFLKDYIHINIGAL-ELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTI 266
Query: 424 VFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGL 482
VF TK+ CD+L R + R + A IHGDKSQ ERD+VLN+F+ G++P+L+ATDVA+RGL
Sbjct: 267 VFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASRGL 326
Query: 483 DIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQ 542
D++D++ V+NYD+P EDY+HRI AYTFF + + SDLI +L A Q
Sbjct: 327 DVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREANQ 386
Query: 543 QV-PRELRDMASRGGGMGRPR 562
+ P+ L+ + RG G R R
Sbjct: 387 AINPKLLQLVEDRGSGRSRGR 407
Score = 48 (22.0 bits), Expect = 1.7e-86, Sum P(2) = 1.7e-86
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 154 EAYRRRHEVTVSGD 167
E YRR E+TV GD
Sbjct: 74 ETYRRSKEITVRGD 87
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
Identities = 176/407 (43%), Positives = 255/407 (62%)
Query: 154 EAYRRRHEVTVSGDE--VPPPFMSF-DATGFPPELLREVHNAGFSSPTPIQAQSWPIALQ 210
E + R + G++ +P P +F DA PE+++ + AGF PTPIQ+QSWPI LQ
Sbjct: 178 ENFNIRCDDLTEGEKRPIPKPTCTFEDAFQQYPEIMQSIRRAGFQKPTPIQSQSWPIILQ 237
Query: 211 SRDIVAIAKTGSGKTLGYLLPGFIHL--KRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 268
D++ IA+TG+GKTL YL+PGFIH+ + R GP +LVL+PTRELA Q++ E K
Sbjct: 238 GIDLIGIAQTGTGKTLSYLMPGFIHIHSQPVSRKQRNGPGMLVLTPTRELALQVEAECSK 297
Query: 269 FGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDE 328
+ + C+YGG + Q++D+ +GVDI++ATPGRLND+ ++L ++YLVLDE
Sbjct: 298 YLYKG-LKSVCIYGGGNRKGQIQDVTKGVDIIIATPGRLNDLQMNNFVNLRSITYLVLDE 356
Query: 329 ADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELA 388
AD+MLD+GFE QI KI+ +V RQT+M TA+WP R++A L P+ V +G +D +
Sbjct: 357 ADKMLDLGFEHQIMKILLDVRPDRQTVMTTASWPDSTRRLAQSYLKQPMIVYVGTLDLVT 416
Query: 389 ANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAA 447
N + Q+I V +K +++ L+S P K+IVF S K + D L+ +L+ Q +
Sbjct: 417 VN-TVKQNIIVTTEEEKRSLVKEFLQSLSPKDKVIVFVSRKLVADDLSSDLSIQGIPVQS 475
Query: 448 IHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIX 507
+HGD+ QS+RD L FR GR +L+ATD+AARGLD+ D+ V NY+FP +E+YVHR+
Sbjct: 476 LHGDREQSDRDQALEDFRTGRVKILIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVG 535
Query: 508 XXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR 554
+ T D + A +LIK+L+ A Q VP LR MA R
Sbjct: 536 RTGRAGKIGESITLVTQDDWKIADELIKILQRANQIVPPSLRSMADR 582
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 857 (306.7 bits), Expect = 1.1e-85, P = 1.1e-85
Identities = 172/394 (43%), Positives = 248/394 (62%)
Query: 169 VPPPFMSF-DATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLG 227
+P P +F DA PE++R + AGF PTPIQ+Q+WPI LQ D++ +A+TG+GKTL
Sbjct: 235 LPNPTCNFEDAFHCYPEVMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLS 294
Query: 228 YLLPGFIH------LKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLY 281
YL+PGFIH L+R RN GP +LVL+PTRELA Q+ E ++ + C+Y
Sbjct: 295 YLMPGFIHIDSQPVLQRARN----GPGMLVLTPTRELALQVDAECSEYSYRG-LKSVCIY 349
Query: 282 GGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQI 341
GG + Q+KD+ +G DI++ATPGRL+D+ + L ++YLVLDEAD+MLDMGFEPQI
Sbjct: 350 GGGDRDGQIKDLSKGADIIIATPGRLHDLQMNNFVYLKSITYLVLDEADKMLDMGFEPQI 409
Query: 342 RKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLA 401
KI+ +V RQT+M +ATWP VR++A L P+ V +G +D L A +TQ+I V
Sbjct: 410 MKILLDVRPDRQTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLD-LVAVSTVTQNIIVTT 468
Query: 402 PMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNL-TRQFGAAAIHGDKSQSERDYV 460
+K ++ + S P K+I+F S K + D L+ +L R+ ++HG++ QS+R+
Sbjct: 469 EDEKRSHIQAFIDSMSPKDKVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERA 528
Query: 461 LNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYT 520
L F+ G+ +L+ATD+A+RGLD+ D+ V NYDFP +E+YVHR+ V+ T
Sbjct: 529 LKSFKTGKVRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSIT 588
Query: 521 FFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR 554
D + A +LI +LE A Q VP +L MA R
Sbjct: 589 LITRNDWKIAGELINILERANQSVPEDLVSMAER 622
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 847 (303.2 bits), Expect = 1.3e-84, P = 1.3e-84
Identities = 171/397 (43%), Positives = 246/397 (61%)
Query: 169 VPPPFMSF-DATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLG 227
+P P F DA PE++ + AGF PTPIQ+Q+WPI LQ D++ +A+TG+GKTL
Sbjct: 235 IPNPACKFEDAFQCYPEVMINIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLS 294
Query: 228 YLLPGFIH---------LKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCT 278
YL+PGFIH L+R RN GP +LVL+PTRELA Q++ E K+ +
Sbjct: 295 YLMPGFIHVDSQPVVFSLQRARN----GPGMLVLTPTRELALQVEAECSKYSYKG-LKSV 349
Query: 279 CLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFE 338
C+YGG + Q+KD+ +GVDI++ATPGRLND+ + L +SYLVLDEAD+MLDMGFE
Sbjct: 350 CVYGGGDRDGQIKDLLKGVDIIIATPGRLNDLQMNNFVYLKSISYLVLDEADKMLDMGFE 409
Query: 339 PQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIE 398
PQI KI+ ++ RQT+M +ATWP VR++A L P+ V +G +D L A + Q+I
Sbjct: 410 PQIMKILLDIRPDRQTVMTSATWPYAVRRLAQSYLKEPMIVYVGTLD-LVAVSTVKQNII 468
Query: 399 VLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNL-TRQFGAAAIHGDKSQSER 457
V +K ++ + S P K+I+F S K + D L+ +L R ++HG++ Q +R
Sbjct: 469 VTTEDEKRSHIQTFIESMSPKDKVIIFVSRKAVADHLSSDLGIRHISVESLHGNREQGDR 528
Query: 458 DYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXV 517
+ L F+ G+ +L+ATD+A+RGLD+ D+ V NYDFP +E+YVHR+ V
Sbjct: 529 ERALKNFKTGKVRILIATDLASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGV 588
Query: 518 AYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR 554
+ T D + A +LI +LE A Q +P +L +MA R
Sbjct: 589 SITLITRSDWKIAGELIHILERANQSIPEDLVEMAER 625
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
Identities = 169/390 (43%), Positives = 244/390 (62%)
Query: 169 VPPPFMSFD-ATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLG 227
+P P +FD A PE++ + AGF PTPIQ+Q+WPI LQ D++ +A+TG+GKTL
Sbjct: 236 IPNPTCTFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLC 295
Query: 228 YLLPGFIHL--KRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAP 285
YL+PGFIHL + R P +LVL+PTRELA Q++ E K+ + C+YGG
Sbjct: 296 YLMPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYKG-LRSVCVYGGGN 354
Query: 286 KGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIV 345
+ Q++++ +GVDI++ATPGRLND+ ++L ++YLVLDEAD+MLDMGFEPQI KI+
Sbjct: 355 RDEQIEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKIL 414
Query: 346 KEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDK 405
+V RQT+M +ATWP V ++A L P+ V +G +D L A ++ Q+I V +K
Sbjct: 415 LDVRPDRQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLD-LVAVSSVKQNIIVTTEEEK 473
Query: 406 HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQF 464
++ L+S K+IVF S K + D L+ +L ++HGD+ Q +R+ L F
Sbjct: 474 WSHMQTFLQSMSSTDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENF 533
Query: 465 RAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGD 524
+ G+ +L+ATD+A+RGLD+ D+ V N+DFP +E+YVHRI V+ T
Sbjct: 534 KTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTR 593
Query: 525 QDSRYASDLIKLLEGAKQQVPRELRDMASR 554
D R AS+LI +LE A Q +P EL MA R
Sbjct: 594 NDWRVASELINILERANQSIPEELVSMAER 623
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 188/417 (45%), Positives = 259/417 (62%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V SG +VP P + F + L+ + A F+ PTP+Q S PI + RD++A A+TG
Sbjct: 142 VDASGKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTG 201
Query: 222 SGKTLGYLLPGFIHLKRCRNDP----------RLG-PTVLVLSPTRELATQIQDEAVKFG 270
SGKT G+L P F L R P R G P+ LVL+PTRELATQI +EA KF
Sbjct: 202 SGKTGGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFT 261
Query: 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 330
S + +YGGAP G Q++++DRG D++VATPGRLND+LE ++SL + YLVLDEAD
Sbjct: 262 YRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEAD 321
Query: 331 RMLDMGFEPQIRKIVKE--VPA--RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDE 386
RMLDMGFEPQIR IV+E +P+ RQTLM++AT+P +++ +A D L N + +++G V
Sbjct: 322 RMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGS 381
Query: 387 LAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGA 445
+ N ITQ I + MDK L +L ++ G +I F TK+M DQL L Q F A
Sbjct: 382 TSEN--ITQRILYVDDMDKKSALLDLLSAEHKGLTLI-FVETKRMADQLTDFLIMQNFKA 438
Query: 446 AAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHR 505
AIHGD++Q+ER+ L+ F+A + +LVAT VAARGLDI ++ V+NYD P+ ++DYVHR
Sbjct: 439 TAIHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHR 498
Query: 506 IXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPR 562
I VA +FF + L+++L A Q+VP L D++ + GR R
Sbjct: 499 IGRTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLSRQNSRGGRTR 555
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 811 (290.5 bits), Expect = 7.3e-84, Sum P(2) = 7.3e-84
Identities = 186/418 (44%), Positives = 252/418 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V SG +VP P +F L+ + A + +PTP+Q S PI + RD++A A+TG
Sbjct: 174 VEASGHDVPEPVNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQTG 233
Query: 222 SGKTLGYLLPGFIHLKRCRNDP---------RLG------PTVLVLSPTRELATQIQDEA 266
SGKT G+L P I + +N P + G PT L+L+PTREL +QI DEA
Sbjct: 234 SGKTGGFLFP--ILSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEA 291
Query: 267 VKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVL 326
KF S + +YGGA G QL+ I+RG D++VATPGRL D++E RISL + YL+L
Sbjct: 292 RKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLIL 351
Query: 327 DEADRMLDMGFEPQIRKIVK--EVPA--RRQTLMYTATWPREVRKIAADLLVNPVQVNIG 382
DEADRMLDMGFEPQIR+IV+ ++P RQTLM++AT+PR+++ +A D L + V +++G
Sbjct: 352 DEADRMLDMGFEPQIRRIVEGEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVG 411
Query: 383 NVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ 442
V + N ITQ +E + DK L IL + ++F TK+M D L+ L Q
Sbjct: 412 RVGSTSEN--ITQKVEYVEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADALSEFLINQ 469
Query: 443 -FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVED 501
F A AIHGD++Q ER+ L FR+GR P+LVAT VAARGLDI ++ V+NYD PT ++D
Sbjct: 470 RFPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTDIDD 529
Query: 502 YVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMG 559
YVHRI +A FF + DLI LL+ A Q+VP L +A G G G
Sbjct: 530 YVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLIDLLKEAHQEVPSFLESIAREGSGYG 587
Score = 48 (22.0 bits), Expect = 7.3e-84, Sum P(2) = 7.3e-84
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 539 GAKQQVPRELRDMASRGGGMGRP 561
G + + RDM GGGMG P
Sbjct: 593 GGRGRGANATRDMRRMGGGMGGP 615
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
Identities = 173/395 (43%), Positives = 242/395 (61%)
Query: 166 GDE--VPPPFMSFD-ATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGS 222
GD+ +P P +F+ A P ++ + GF PTPIQ+Q+WP+ L D++ IA+TG+
Sbjct: 267 GDKRTIPNPVCTFEEAFAHYPGIMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGT 326
Query: 223 GKTLGYLLPGFIHL--KRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCL 280
GKTL YLLPGFIH+ + D R GP +LVL+PTRELA QI+ E K+ C+
Sbjct: 327 GKTLAYLLPGFIHMDGQPMPRDKRNGPGMLVLTPTRELALQIEAECNKYSYKG-FKSICI 385
Query: 281 YGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQ 340
YGG + Q+K + GVDIV+ATPGRLND+ I+L ++YLVLDEADRMLDMGFEPQ
Sbjct: 386 YGGGDRNAQIKVVTSGVDIVIATPGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQ 445
Query: 341 IRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVL 400
I KI+ ++ RQT+M +ATWP VR++A L +P+ V +G +D LAA + Q + +
Sbjct: 446 IMKIILDIRPDRQTVMTSATWPPGVRRLAKSYLKDPMMVYVGTLD-LAAVNTVQQTVLFV 504
Query: 401 APMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDY 459
+K + + EP K+++F K D L+ +L Q ++HGD+ Q +R+
Sbjct: 505 QEDEKKDYVFDFIHRMEPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREE 564
Query: 460 VLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAY 519
L F+ GR +LVATD+A+RGLD+ DI V NYDFP VE+YVHR+ +
Sbjct: 565 ALQDFKDGRVRILVATDLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESV 624
Query: 520 TFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR 554
T +D R A++LI +LE + Q VP EL MA R
Sbjct: 625 TLVTREDWRVAAELITILERSGQDVPEELVLMAER 659
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
Identities = 163/396 (41%), Positives = 249/396 (62%)
Query: 165 SGDE--VPPPFMSF-DATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
SG++ +P P F DA P+LL+ + G PTPIQ+Q+WPI LQ D++ +A+TG
Sbjct: 210 SGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTG 269
Query: 222 SGKTLGYLLPGFIHL--KRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTC 279
+GKTL YL+PGFIHL + + R GP +LVL+PTRELA ++ E K+ + C
Sbjct: 270 TGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKG-LKSIC 328
Query: 280 LYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEP 339
+YGG + Q++DI +GVDI++ATPGRLND+ ++L ++YLV+DEAD+MLDM FEP
Sbjct: 329 IYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEP 388
Query: 340 QIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEV 399
QIRKI+ +V RQT+M +ATWP VR++A L +P+ V +GN++ +A N + Q+I V
Sbjct: 389 QIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVN-TVKQNIIV 447
Query: 400 LAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERD 458
+K ++ + + P K+I+F S K + D L+ + Q A ++HG+ QS+++
Sbjct: 448 TTEKEKRALTQEFVENMSPNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQE 507
Query: 459 YVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVA 518
+ F++G +L+ TD+ +RGLD+ D+ V NYDFP ++ YVHR+ +
Sbjct: 508 RAVEDFKSGNIKILITTDIVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTS 567
Query: 519 YTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR 554
T +DS+ A +LIK+L+ A Q VP +L MA +
Sbjct: 568 VTLITQRDSKMAGELIKILDRANQSVPEDLVVMAEQ 603
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 799 (286.3 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 185/418 (44%), Positives = 255/418 (61%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V SGD+VP P SF A L+ + + F+ PTP+Q S PI RD++A A+TG
Sbjct: 174 VEASGDKVPEPITSFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQTG 233
Query: 222 SGKTLGYLLPGFI--HLKRCRNDP---------RLGPTVLVLSPTRELATQIQDEAVKFG 270
SGKT G+L P ++K P ++ PT+LV++PTREL +QI +E+ KF
Sbjct: 234 SGKTGGFLFPVLSESYMKGPAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEESKKFS 293
Query: 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 330
S + +YGGA G Q++++DRG D++VATPGRL D+L+ ++SL + YLVLDEAD
Sbjct: 294 YRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEAD 353
Query: 331 RMLDMGFEPQIRKIVKE--VPA--RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDE 386
RMLDMGFEPQIR IV+E +PA RQTLM++AT+PR+++ +A D L + V +++G V
Sbjct: 354 RMLDMGFEPQIRYIVEECDMPAVKDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGS 413
Query: 387 LAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGA 445
+ N ITQ I + +K + +L + E G I VF TK+M D LA L Q F A
Sbjct: 414 TSEN--ITQKILYVEDDEKKSVILDLLSANENGLTI-VFTETKRMADNLADYLYDQGFPA 470
Query: 446 AAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHR 505
AIHGD+SQ ER+ L F+ G +P+LVAT VAARGLDI ++ V+NYD P+ ++DYVHR
Sbjct: 471 TAIHGDRSQYEREKALAAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDYVHR 530
Query: 506 IXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPRR 563
I +A FF + LI+LL A Q+VP L +A R G G+ R
Sbjct: 531 IGRTGRAGNVGIATAFFNRNNKNVVKGLIELLSEANQEVPDFLTKIA-REGAFGKMTR 587
Score = 46 (21.3 bits), Expect = 2.2e-82, Sum P(2) = 2.2e-82
Identities = 17/59 (28%), Positives = 22/59 (37%)
Query: 78 GQRHGYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGG 136
G R Y P + N GG + + S + S RGG S+ N G GG
Sbjct: 28 GGRSQYVPPHLRNRQGGGNQSGSSSESSDVPFGGSQRGG-FNSNGFNNNRG--GFNNGG 83
Score = 45 (20.9 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 82 GYSPENEDNSY-GGRDTNAGSKLEAGTRG-NQSARGGPVQSHNIPNGTASVG 131
G + N +NS+ GGR L G NQS G +S ++P G + G
Sbjct: 16 GANTVNNNNSFRGGRSQYVPPHLRNRQGGGNQS--GSSSESSDVPFGGSQRG 65
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 695 (249.7 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
Identities = 141/310 (45%), Positives = 199/310 (64%)
Query: 250 LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLND 309
L+L PTREL Q+ DE F K+ I +YGG PK Q+ ++ +G DI+VATPGRL D
Sbjct: 431 LILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRLLD 490
Query: 310 ILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIA 369
LE I+L + Y+V+DEADR+LDMGFE Q+RKI+ +V +Q L TATWP +VRK+A
Sbjct: 491 FLENGNINLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQVRKLA 550
Query: 370 ADLL-VNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCST 428
D +PV++ IG +EL ANK I Q++ + + +D ++L L+ +KI++FC T
Sbjct: 551 YDFCSYDPVKIQIGK-NELTANKNIEQNVIISSSIDMKKKLLDWLKENYENNKILIFCDT 609
Query: 429 KKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI 487
K+ CD L + L Q+ A +IHGDK Q ERD +LN ++ R +LVATDVA+RGLDIK+I
Sbjct: 610 KRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASRGLDIKNI 669
Query: 488 RVVVNYDFPTGVEDYVHRIXXXXXX-----XXXXVAYTFFGDQDSRYASDLIKLLEGAKQ 542
VV+NYD P +EDY+HRI +Y ++ Q ++A +LIKLL Q
Sbjct: 670 SVVINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFSYDYYMPQKLKFAKELIKLLNKTNQ 729
Query: 543 QVPRELRDMA 552
VP +L+++A
Sbjct: 730 TVPPQLKEIA 739
Score = 149 (57.5 bits), Expect = 2.8e-82, Sum P(2) = 2.8e-82
Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 158 RRHEVTVSGDEVPPPFMS-FDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
+++ + ++ D + ++ F F +L ++N FS PT IQ +WPIAL +D++
Sbjct: 271 KKNNIYINKDGIIHNIINKFSDVCFHESILNYLNNK-FSEPTAIQKITWPIALSGKDLIG 329
Query: 217 IAKTGSGKTLGYLLPGFIHL 236
+A+TGSGKTL ++LP F+H+
Sbjct: 330 VAETGSGKTLAFVLPCFMHI 349
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
Identities = 172/390 (44%), Positives = 242/390 (62%)
Query: 169 VPPPFMSF-DATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLG 227
+P P F D P+++ + GF PTPIQ+Q+WPI LQ D++ IA+TG+GKTL
Sbjct: 234 IPNPVCKFEDVFEQYPDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLA 293
Query: 228 YLLPGFIHL--KRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAP 285
YL+PGFIHL + D R GP +LVL+PTRELA Q++ E +K+ C+YGG
Sbjct: 294 YLMPGFIHLASQPIPKDKRGGPGMLVLAPTRELALQVEAECLKYTYKG-FKSICIYGGGD 352
Query: 286 KGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIV 345
+ Q+ + +GVDIV+ATPGRLND+ I+L ++YL +EADRMLDMGFEPQI KI+
Sbjct: 353 RKAQINVVTKGVDIVIATPGRLNDLQMNNFINLKSITYLA-NEADRMLDMGFEPQIMKIL 411
Query: 346 KEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDK 405
+V RQT+M +ATWP VR++A L NP+ V +G +D LAA + Q + V+ +K
Sbjct: 412 IDVRPDRQTVMMSATWPDGVRRLAKSYLRNPMIVYVGTLD-LAAVNTVEQKVIVINEEEK 470
Query: 406 HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQF 464
+E + S +P K I+F K D +A +L Q ++HGD+ Q +R+ L+ F
Sbjct: 471 KAFMENFIDSMKPKDKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDF 530
Query: 465 RAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGD 524
+ G+ +LVATD+A+RGLD+ DI V N+DFP +E+YVHR+ A T
Sbjct: 531 KKGKVRILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITK 590
Query: 525 QDSRYASDLIKLLEGAKQQVPRELRDMASR 554
+D + AS+LI +L+ AKQ VP EL MA R
Sbjct: 591 KDWKAASELIDILQRAKQVVPDELISMAER 620
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 207/542 (38%), Positives = 283/542 (52%)
Query: 44 ETNVTQYERPAMMAPPKXXXXXXXXXXXXXXXXXGQRHGYS--PENEDNSYGGRDTNAGS 101
+ N Y P + P+ G R G S N YG G+
Sbjct: 15 DNNENGYVPPHLRGKPRSARNNSSNYNNNNGGYNGGRGGGSFFSNNRRGGYGNGGFFGGN 74
Query: 102 KLEAGTRGNQSARGGPVQSHNIP---NGTASVGVGQGGSSTRXXXXXXXXXXXXXEAYRR 158
G+R N + G + ++P N A + + G +
Sbjct: 75 N--GGSRSNGRSGGRWIDGKHVPAPRNEKAEIAIF-GVPEDPNFQSSGINFDNYDDI--- 128
Query: 159 RHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIA 218
V SG +VP P F + LL + A F+ PTP+Q S PI RD++A A
Sbjct: 129 --PVDASGKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACA 186
Query: 219 KTGSGKTLGYLLPGFIHLKRCRNDPR---LG--------PTVLVLSPTRELATQIQDEAV 267
+TGSGKT G+L P + P+ G PT ++++PTRELATQI DEA
Sbjct: 187 QTGSGKTGGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAK 246
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF S + +YGG+P G QL++I+RG D++VATPGRLND+LE +ISL V YLVLD
Sbjct: 247 KFTYRSWVKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLLERGKISLANVKYLVLD 306
Query: 328 EADRMLDMGFEPQIRKIVKE---VPA-RRQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR IV++ P RQTLM++AT+P +++ +A D L + + +++G
Sbjct: 307 EADRMLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGR 366
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
V + N ITQ + + DK L +L + G +I F TK+M DQL L Q
Sbjct: 367 VGSTSEN--ITQKVLYVENQDKKSALLDLLSASTDGLTLI-FVETKRMADQLTDFLIMQN 423
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
F A AIHGD++QSER+ L FR+G + +LVAT VAARGLDI ++ V+NYD P+ V+DY
Sbjct: 424 FRATAIHGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDY 483
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRD-MASRGGGMGRP 561
VHRI +A FF ++S L ++L A Q+VP L+D M S G
Sbjct: 484 VHRIGRTGRAGNTGLATAFFNSENSNIVKGLHEILTEANQEVPSFLKDAMMSAPGSRSNS 543
Query: 562 RR 563
RR
Sbjct: 544 RR 545
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
Identities = 170/399 (42%), Positives = 243/399 (60%)
Query: 157 RRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
RR+ + VSG P P SF GF +L+ ++ + ++ PTPIQ Q PIAL RD +
Sbjct: 240 RRKLNLKVSGAAPPKPATSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIG 299
Query: 217 IAKTGSGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275
IAKTGSGKT ++ P +H+ + +P GP +++ PTREL QI E +FGK+ +
Sbjct: 300 IAKTGSGKTAAFIWPILVHIMDQKELEPGEGPIAVIVCPTRELCQQIHAECKRFGKAYGL 359
Query: 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 335
+YGG Q K + G +IVV TPGRL D ++ + SL +V++LV DEADRM DM
Sbjct: 360 RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATSLQRVTFLVFDEADRMFDM 419
Query: 336 GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ 395
GFE Q+R I V RQTL+++AT+ +++ K+A D+LV+P++V G++ E AN+ ITQ
Sbjct: 420 GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRVVQGDIGE--ANEDITQ 477
Query: 396 HIEVL-APMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKS 453
+EVL + DK L + L ++VF + K C++LA NL ++ + +HGD
Sbjct: 478 IVEVLQSGQDKWGWLTRRLVEFTSAGSVLVFVTKKANCEELATNLIQEGYSLGLLHGDMD 537
Query: 454 QSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXX 513
QSER+ V+ F+ PVLVATDVAARGLDI IR VVNYD ++ + HRI
Sbjct: 538 QSERNKVIADFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAG 597
Query: 514 XXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA 552
VAYT +D+ +A DL++ LEGA Q V ++L D+A
Sbjct: 598 EKGVAYTLLTTKDTSFAGDLVRNLEGANQSVSKDLLDLA 636
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
Identities = 174/410 (42%), Positives = 254/410 (61%)
Query: 156 YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
YR+R + VSG +V P +F+ GF +++ + + PT IQ Q+ PI L RD++
Sbjct: 210 YRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVI 269
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGK 271
IAKTGSGKT ++LP +H+ + P L GP ++ +PTRELA QI EA KF K
Sbjct: 270 GIAKTGSGKTAAFVLPMIVHIM---DQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSK 326
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331
+ + + +YGG K Q K++ G +IVVATPGRL D+L+M+ +++ + SYLVLDEADR
Sbjct: 327 AYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKMKALTMMRASYLVLDEADR 386
Query: 332 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANK 391
M D+GFEPQ+R IV ++ RQTL+++AT P +V K+A ++L +P++V +G V AN+
Sbjct: 387 MFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVG--MANE 444
Query: 392 AITQHIEVLAPMDKHRR---LEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAA 447
ITQ + V+ P D + LE++ + G ++VF S K D++ LT F AA
Sbjct: 445 DITQVVNVI-PSDAEKLPWLLEKLPGMIDEGD-VLVFASKKATVDEIEAQLTLNSFKVAA 502
Query: 448 IHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIX 507
+HGDK Q+ R L +F++G VL+ATDVAARGLDIK ++ VVNYD ++ +VHRI
Sbjct: 503 LHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRIG 562
Query: 508 XXXXXXXXX-VAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGG 556
VAYT +++R+A +L+ L A Q VP EL D+A + G
Sbjct: 563 RTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPELTDLAMKDG 612
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
Identities = 168/397 (42%), Positives = 246/397 (61%)
Query: 160 HEVTVSGDEVPP--PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAI 217
+E+TV P +SFD + ++ F PTPIQ+ SWP L +D++ +
Sbjct: 139 NEITVEDPSSSSLRPILSFDQVQLTSAITSKLSK--FDKPTPIQSVSWPFLLSGKDVIGV 196
Query: 218 AKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISC 277
A+TGSGKT + +P ++ N L +VL +SPTRELA QI D ++ S ++C
Sbjct: 197 AETGSGKTFAFGVPAINNIITTGNTKTL--SVLCISPTRELALQIYDNLIELTADSGVNC 254
Query: 278 TCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF 337
+YGG K Q++ I + ++VVATPGRL D++ I+L +V+YLVLDEADRML+ GF
Sbjct: 255 VAVYGGVSKDDQIRKI-KTANVVVATPGRLVDLINDGAINLGKVNYLVLDEADRMLEKGF 313
Query: 338 EPQIRKIVKEVP-ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQH 396
E I+ I+ + RQTLM+TATWP+EVR++A + + +PV+V +G+ DEL+ANK ITQ
Sbjct: 314 EEDIKTIISNTSNSERQTLMFTATWPKEVRELANNFMNSPVKVTVGDRDELSANKRITQV 373
Query: 397 IEVLAPMDKHRRLEQILR----SQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGD 451
+EV+ DK ++L Q+LR ++ +KI++F KK ++ L R +F AAIHGD
Sbjct: 374 VEVINKFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNRFSVAAIHGD 433
Query: 452 KSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXX 511
SQ +R L+ F++G+S +L+ATDVAARGLDI +++VV+N FP +EDYVHRI
Sbjct: 434 LSQQQRTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGR 493
Query: 512 XXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPREL 548
A+T F + + + L +L GA Q VP EL
Sbjct: 494 AGAKGTAHTLFTEDEKHLSGALCNILRGANQPVPEEL 530
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 167/390 (42%), Positives = 241/390 (61%)
Query: 169 VPPPFMSF-DATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLG 227
+P P F D P+++ + GF PTPIQ+Q+WPI LQ D++ IA+TG+GKTL
Sbjct: 47 IPNPVCKFEDVFEQYPDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLA 106
Query: 228 YLLPGFIHL--KRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAP 285
YL+PGFIHL + D R GP +LVL+PTRELA Q++ E +K+ C+YGG
Sbjct: 107 YLMPGFIHLASQPIPKDKRGGPGMLVLAPTRELALQVEAECLKYTYKG-FKSICIYGGGD 165
Query: 286 KGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIV 345
+ Q+ + +GVDIV+ATPGRLND+ I+L ++YLVLDEADRMLDMGFEPQI KI+
Sbjct: 166 RKAQINVVTKGVDIVIATPGRLNDLQMNNFINLKSITYLVLDEADRMLDMGFEPQIMKIL 225
Query: 346 KEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDK 405
+V RQT+M +ATWP VR++A L NP+ V +G +D LA + + ++++ +
Sbjct: 226 IDVRPDRQTVMMSATWPDGVRRLAKSYLRNPMIVYVGTLD-LAVSGVVLKYLQFDKDIFT 284
Query: 406 HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQF 464
+ + Q+ ++VF + D +A +L Q ++HGD+ Q +R+ L+ F
Sbjct: 285 WKYM-QVNAQSFCTDVVVVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDF 343
Query: 465 RAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGD 524
+ G+ +LVATD+A+RGLD+ DI V N+DFP +E+YVHR+ A T
Sbjct: 344 KKGKVRILVATDLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITK 403
Query: 525 QDSRYASDLIKLLEGAKQQVPRELRDMASR 554
+D + AS+LI +L+ AKQ VP EL MA R
Sbjct: 404 KDWKAASELIDILQRAKQVVPDELISMAER 433
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 672 (241.6 bits), Expect = 5.0e-79, Sum P(3) = 5.0e-79
Identities = 145/328 (44%), Positives = 211/328 (64%)
Query: 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGR 306
P LVL+PTRELA QI DEA KF S + +YGGA G Q++D++RG ++VATPGR
Sbjct: 299 PISLVLAPTRELALQIYDEARKFSYRSHVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 358
Query: 307 LNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWP 362
L D++E +I L+ +YLVLDEADRMLDMGFEPQIR+IV++ +P + RQT+M++AT+P
Sbjct: 359 LLDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGLRQTMMFSATFP 418
Query: 363 REVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKI 422
+E++ +A D L + + + +G V + N ITQ + + DK L +L + S
Sbjct: 419 KEIQILARDFLEDYIFLAVGRVGSTSEN--ITQKVVWVEENDKRSFLLDLLNATGKDSLT 476
Query: 423 IVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARG 481
+VF TKK D L L R+ + +IHGD+SQ +R+ L+QFR+GR P+LVAT VAARG
Sbjct: 477 LVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAARG 536
Query: 482 LDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAK 541
LDI +++ V+N+D P+ +E+YVHRI +A +FF D++ DL+ +L AK
Sbjct: 537 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVEAK 596
Query: 542 QQVPRELRDMA----SRGGGMGRPRRWA 565
Q+VP L +A + GR +R++
Sbjct: 597 QEVPSWLESLAYEHQHKSSSRGRSKRFS 624
Score = 116 (45.9 bits), Expect = 5.0e-79, Sum P(3) = 5.0e-79
Identities = 24/70 (34%), Positives = 38/70 (54%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G P P F ++ ++ + ++ PTP+Q + PI RD++A A+TG
Sbjct: 196 VEATGHNGPQPIDRFHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTG 255
Query: 222 SGKTLGYLLP 231
SGKT +LLP
Sbjct: 256 SGKTAAFLLP 265
Score = 38 (18.4 bits), Expect = 5.0e-79, Sum P(3) = 5.0e-79
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 651 QHKSPFRERSRSPLGG 666
QHKS R RS+ GG
Sbjct: 611 QHKSSSRGRSKRFSGG 626
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 794 (284.6 bits), Expect = 5.4e-79, P = 5.4e-79
Identities = 166/408 (40%), Positives = 244/408 (59%)
Query: 159 RHEVT--VSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
RH++ VSG P P SF GF +L+ ++ + ++ PTPIQ Q P+AL RD++
Sbjct: 236 RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIG 295
Query: 217 IAKTGSGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275
IAKTGSGKT ++ P IH+ + +P GP +++ PTREL QI E +FGK+ +
Sbjct: 296 IAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNL 355
Query: 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 335
+YGG Q K + G +IVV TPGRL D ++ + +L +VSYLV DEADRM DM
Sbjct: 356 RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDM 415
Query: 336 GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ 395
GFE Q+R I V RQTL+++AT+ +++ K+A D+L++P++V G++ E AN+ +TQ
Sbjct: 416 GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGE--ANEDVTQ 473
Query: 396 HIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQ 454
+E+L K L + L +++F + K ++LA NL ++ +HGD Q
Sbjct: 474 IVEILHSGSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQ 533
Query: 455 SERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXX 514
SER+ V++ F+ PVLVATDVAARGLDI I+ V+NYD ++ + HRI
Sbjct: 534 SERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGE 593
Query: 515 XXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPR 562
VAYT +DS +A DL++ LEGA Q V +EL D+A + + R
Sbjct: 594 KGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSR 641
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
Identities = 169/402 (42%), Positives = 250/402 (62%)
Query: 157 RRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
RR V V+G P P SF GF +L++ V A ++ PTPIQAQ+ P AL RDI+
Sbjct: 252 RRTLGVKVTGPSPPKPVTSFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSGRDIIG 311
Query: 217 IAKTGSGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275
IAKTGSGKT ++ P +H+ + P GP L+L+PTREL+ QI +EA KFGK +
Sbjct: 312 IAKTGSGKTAAFIWPMLMHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFGKVYNL 371
Query: 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 335
+ C YGG K Q K +++G +I+VATPGR+ D+++M+ +L +V++LVLDEADRM M
Sbjct: 372 NVVCCYGGGSKWEQSKALEQGAEIIVATPGRMIDMVKMKATNLRRVTFLVLDEADRMFHM 431
Query: 336 GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ 395
GFEPQ+R I V RQ LM++AT+ + + ++A D+L +PV++ G+++E AN+ ITQ
Sbjct: 432 GFEPQVRSICNHVRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNE--ANQDITQ 489
Query: 396 HIEVLA-PMDKHRRLE-QILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDK 452
+ V P+ K L +++ GS +++F + K + ++ NL +++ +HGD
Sbjct: 490 SVYVFPNPLQKWNWLLCHLVKFLSEGS-VLIFVTKKVDAETVSNNLLIKEYNCLLLHGDM 548
Query: 453 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXX 512
Q++R+ V+ QF+ +LVATDVAARGLDI IR VVNYD +E + HRI
Sbjct: 549 DQADRNKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIGRTGRA 608
Query: 513 XXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR 554
AYT D+D +A L++ LEGA Q VP +L ++A +
Sbjct: 609 GEKGNAYTLVTDKDKEFAGHLVRNLEGADQLVPDDLMELAMK 650
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
Identities = 166/410 (40%), Positives = 247/410 (60%)
Query: 159 RHEVT--VSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
RH++ VSG P P SF GF +L+ ++ + ++ PTPIQ Q P+AL RD++
Sbjct: 236 RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIG 295
Query: 217 IAKTGSGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275
IAKTGSGKT ++ P IH+ + +P GP +++ PTREL QI E +FGK+ +
Sbjct: 296 IAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNL 355
Query: 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 335
+YGG Q K + G +IVV TPGRL D ++ + +L +VSYLV DEADRM DM
Sbjct: 356 RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDM 415
Query: 336 GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ 395
GFE Q+R I V RQTL+++AT+ +++ K+A D+L++P++V G++ E AN+ +TQ
Sbjct: 416 GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGE--ANEDVTQ 473
Query: 396 HIEVL--APMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDK 452
+E+L P + +++ GS +++F + K ++LA NL ++ +HGD
Sbjct: 474 IVEILHSGPSKWNWLTRRLVEFTSSGS-VLLFVTKKANAEELANNLKQEGHNLGLLHGDM 532
Query: 453 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXX 512
QSER+ V++ F+ PVLVATDVAARGLDI I+ V+NYD ++ + HRI
Sbjct: 533 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRA 592
Query: 513 XXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPR 562
VAYT +DS +A DL++ LEGA Q V +EL D+A + + R
Sbjct: 593 GEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSR 642
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
Identities = 166/410 (40%), Positives = 247/410 (60%)
Query: 159 RHEVT--VSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
RH++ VSG P P SF GF +L+ ++ + ++ PTPIQ Q P+AL RD++
Sbjct: 236 RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIG 295
Query: 217 IAKTGSGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275
IAKTGSGKT ++ P IH+ + +P GP +++ PTREL QI E +FGK+ +
Sbjct: 296 IAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNL 355
Query: 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 335
+YGG Q K + G +IVV TPGRL D ++ + +L +VSYLV DEADRM DM
Sbjct: 356 RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDM 415
Query: 336 GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ 395
GFE Q+R I V RQTL+++AT+ +++ K+A D+L++P++V G++ E AN+ +TQ
Sbjct: 416 GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGE--ANEDVTQ 473
Query: 396 HIEVL--APMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDK 452
+E+L P + +++ GS +++F + K ++LA NL ++ +HGD
Sbjct: 474 IVEILHSGPSKWNWLTRRLVEFTSSGS-VLLFVTKKANAEELANNLKQEGHNLGLLHGDM 532
Query: 453 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXX 512
QSER+ V++ F+ PVLVATDVAARGLDI I+ V+NYD ++ + HRI
Sbjct: 533 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRA 592
Query: 513 XXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPR 562
VAYT +DS +A DL++ LEGA Q V +EL D+A + + R
Sbjct: 593 GEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSR 642
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 790 (283.2 bits), Expect = 1.4e-78, P = 1.4e-78
Identities = 166/410 (40%), Positives = 247/410 (60%)
Query: 159 RHEVT--VSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
RH++ VSG P P SF GF +L+ ++ + ++ PTPIQ Q P+AL RD++
Sbjct: 236 RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIG 295
Query: 217 IAKTGSGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275
IAKTGSGKT ++ P IH+ + +P GP +++ PTREL QI E +FGK+ +
Sbjct: 296 IAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAEGKRFGKAYNL 355
Query: 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 335
+YGG Q K + G +IVV TPGRL D ++ + +L +VSYLV DEADRM DM
Sbjct: 356 RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDM 415
Query: 336 GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ 395
GFE Q+R I V RQTL+++AT+ +++ K+A D+L++P++V G++ E AN+ +TQ
Sbjct: 416 GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGE--ANEDVTQ 473
Query: 396 HIEVL--APMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDK 452
+E+L P + +++ GS +++F + K ++LA NL ++ +HGD
Sbjct: 474 IVEILHSGPSKWNWLTRRLVEFTSSGS-VLLFVTKKANAEELANNLKQEGHNLGLLHGDM 532
Query: 453 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXX 512
QSER+ V++ F+ PVLVATDVAARGLDI I+ V+NYD ++ + HRI
Sbjct: 533 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRA 592
Query: 513 XXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPR 562
VAYT +DS +A DL++ LEGA Q V +EL D+A + + R
Sbjct: 593 GEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSR 642
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 789 (282.8 bits), Expect = 1.8e-78, P = 1.8e-78
Identities = 166/410 (40%), Positives = 247/410 (60%)
Query: 159 RHEVT--VSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
RH++ VSG P P SF GF +L+ ++ + ++ PTPIQ Q P+AL RD++
Sbjct: 236 RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIG 295
Query: 217 IAKTGSGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275
IAKTGSGKT ++ P IH+ + +P GP +++ PTREL QI E +FGK+ +
Sbjct: 296 IAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNL 355
Query: 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 335
+YGG Q K + G +IVV TPGRL D ++ + +L +VSYLV DEADRM DM
Sbjct: 356 RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDM 415
Query: 336 GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ 395
GFE Q+R I V RQTL+++AT+ +++ K+A D+L++P++V G++ E AN+ +TQ
Sbjct: 416 GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGE--ANEDVTQ 473
Query: 396 HIEVL--APMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDK 452
+E+L P + +++ GS +++F + K ++LA NL ++ +HGD
Sbjct: 474 IVEILHSGPSKWNWLTRRLVEFTSSGS-VLLFVTKKANAEELASNLKQEGHNLGLLHGDM 532
Query: 453 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXX 512
QSER+ V++ F+ PVLVATDVAARGLDI I+ V+NYD ++ + HRI
Sbjct: 533 DQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRA 592
Query: 513 XXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPR 562
VAYT +DS +A DL++ LEGA Q V +EL D+A + + R
Sbjct: 593 GEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSR 642
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 788 (282.4 bits), Expect = 2.3e-78, P = 2.3e-78
Identities = 170/364 (46%), Positives = 230/364 (63%)
Query: 194 FSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIH-LKRCRN----DPRLGPT 248
F P+PIQ+ +WP L RD++ IAKTGSGKTL + +P +H LK+ + ++ PT
Sbjct: 134 FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPT 193
Query: 249 VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLN 308
LVLSPTRELA QI D + G+ + C+YGG+ KGPQ+ I GVDIV+ TPGRL
Sbjct: 194 CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLR 253
Query: 309 DILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKI 368
D++E + L+ VS++VLDEADRMLDMGFE +R I+ RQ +M++ATWP +V K+
Sbjct: 254 DLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKL 313
Query: 369 AADLL-VNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSK--IIVF 425
A + + NP++V IG+VD LAAN + Q IEVL + +RL +L K ++VF
Sbjct: 314 AQEFMDPNPIKVIIGSVD-LAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVF 372
Query: 426 CSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDI 484
K ++L R L R + A +IHG+K+QSER L+ F+ G P+LVATDVAARGLDI
Sbjct: 373 ALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAARGLDI 432
Query: 485 KDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQV 544
D+ VV+NY FP EDYVHRI VA+TFF + A +L+ +L A Q V
Sbjct: 433 PDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLREAGQVV 492
Query: 545 PREL 548
P +L
Sbjct: 493 PADL 496
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 791 (283.5 bits), Expect = 3.1e-78, P = 3.1e-78
Identities = 163/405 (40%), Positives = 248/405 (61%)
Query: 156 YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
YR+ E+ V G +VP P + TG ++L + + P PIQ Q+ PI + RD +
Sbjct: 511 YRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCI 570
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGK 271
+AKTGSGKTLG++LP H+K + P + GP LV++PTREL QI + KF K
Sbjct: 571 GVAKTGSGKTLGFVLPMLRHIK---DQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSK 627
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDIL--EMRRIS-LNQVSYLVLDE 328
I C +YGG+ Q+ ++ RG +IVV TPGR+ DIL +I+ L +V++LV+DE
Sbjct: 628 PLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDE 687
Query: 329 ADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELA 388
ADRM DMGFEPQI +I++ + RQT++++AT+PR+V +A +L PV++ +G
Sbjct: 688 ADRMFDMGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGG--RSV 745
Query: 389 ANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAA 447
NK ITQ +EV D+ RL ++L KI+VF +++ CD L R++ + + +
Sbjct: 746 VNKDITQLVEVRPESDRFLRLLELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLS 805
Query: 448 IHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIX 507
+HG K Q++R+ ++ F+ +L+AT VAARGLD+K++ +VVN+D P EDYVHR+
Sbjct: 806 LHGGKDQTDRESTISDFKNDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVG 865
Query: 508 XXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA 552
A TF + D++YA DL+K LE ++Q VP +L+ +A
Sbjct: 866 RTGRAGRKGCAVTFISEDDAKYAPDLVKALELSEQPVPDDLKALA 910
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 164/403 (40%), Positives = 243/403 (60%)
Query: 164 VSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSG 223
VSG P P SF GF +L+ ++ + ++ PTPIQ Q P+AL RD++ IAKTGSG
Sbjct: 243 VSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSG 302
Query: 224 KTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYG 282
KT ++ P IH+ + +P GP +++ PTREL QI E +FGK+ + +YG
Sbjct: 303 KTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYG 362
Query: 283 GAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIR 342
G Q K + G +IVV TPGRL D ++ + +L +VSYLV DEADRM DMGFE Q+R
Sbjct: 363 GGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDMGFEYQVR 422
Query: 343 KIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVL-- 400
I V RQTL+++AT+ +++ K+A D+L++P++V G++ E AN+ +TQ +E+L
Sbjct: 423 SIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGE--ANEDVTQIVEILHS 480
Query: 401 APMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDY 459
P + +++ GS +++F + K ++LA NL ++ +HGD QSER+
Sbjct: 481 GPSKWNWLTRRLVEFTSSGS-VLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNK 539
Query: 460 VLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAY 519
V++ F+ PVLVATDVAARGLDI I+ V+NYD ++ + HRI VAY
Sbjct: 540 VISDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAY 599
Query: 520 TFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPR 562
T +DS +A DL++ LEGA Q V +EL D+A + + R
Sbjct: 600 TLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSR 642
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 166/410 (40%), Positives = 246/410 (60%)
Query: 159 RHEVT--VSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
RH++ VSG P P SF GF +L+ ++ + ++ PTPIQ Q P+AL RD++
Sbjct: 236 RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIG 295
Query: 217 IAKTGSGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275
IAKTGSGKT ++ P IH+ + +P GP +++ PTREL QI E +FGK+ +
Sbjct: 296 IAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNL 355
Query: 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 335
+YGG Q K + G +IVV TPGRL D ++ + +L +VSYLV DEADRM DM
Sbjct: 356 RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVSYLVFDEADRMFDM 415
Query: 336 GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ 395
GFE Q+R I V RQTL+++AT+ +++ K+A D+L++P++V G++ E AN+ +TQ
Sbjct: 416 GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGE--ANEDVTQ 473
Query: 396 HIEVL--APMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDK 452
+E+L P + +++ GS +++F + K ++LA NL ++ +HGD
Sbjct: 474 IVEILHSGPSKWNWLTRRLVEFTSSGS-VLLFVTKKANAEELANNLKQEGHNLGLLHGDM 532
Query: 453 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXX 512
QSER+ V+ F+ PVLVATDVAARGLDI I+ V+NYD ++ + HRI
Sbjct: 533 DQSERNKVILDFKKKDIPVLVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRA 592
Query: 513 XXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPR 562
VAYT +DS +A DL++ LEGA Q V +EL D+A + + R
Sbjct: 593 GEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNAWFRKSR 642
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 180/422 (42%), Positives = 251/422 (59%)
Query: 157 RRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
R+ ++ ++G ++ P SF GF LL+ + +PTPIQ Q+ PIAL RD++A
Sbjct: 288 RKNLDIRMTGTDLINPVTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIA 347
Query: 217 IAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGKS 272
IAKTGSGKT ++ P H+ + P L GP L L+PTRELA QI E +K+ K
Sbjct: 348 IAKTGSGKTATFIWPSISHIM---DQPYLEKGDGPIALFLAPTRELAHQIYLETLKYSKY 404
Query: 273 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332
++ T LYGG K Q K++ G +I+VATPGRL D+++++ LN+VSYLVLDEAD+M
Sbjct: 405 FKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKLKATKLNRVSYLVLDEADKM 464
Query: 333 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKA 392
D GF PQ+ IV V RQTL+++AT+ V + A +L +P++++IG + +AN
Sbjct: 465 FDFGFGPQVLSIVNHVRPDRQTLLFSATFKPNVEEFARTILSDPIKISIGMIG--SANSD 522
Query: 393 ITQHIEVL-APMDKHRRL-EQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIH 449
ITQ ++VL + DK L Q+ GS +++F STK +QL+ NLT+ F +H
Sbjct: 523 ITQIVQVLKSDSDKWNWLTNQLALLLSQGS-VLIFVSTKVAVEQLSSNLTKFGFQTCTLH 581
Query: 450 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXX 509
GDK+Q ER + F+ G+ +L+ATDVAARGLDI I+ VVNYD +E + HRI
Sbjct: 582 GDKNQIERSQTIQTFKEGKINILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGRT 641
Query: 510 XXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA--------SRGGGMGRP 561
VAYT +D ++ DLIK LE A Q VP EL D+A RGGG G
Sbjct: 642 GRAGNTGVAYTLITPKDIHFSVDLIKNLESASQFVPPELIDVAMNNPHFKRERGGGGGGS 701
Query: 562 RR 563
R
Sbjct: 702 NR 703
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
Identities = 161/400 (40%), Positives = 244/400 (61%)
Query: 159 RHEVT--VSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
RH++ VSG P P SF GF +L+ ++ + ++ PTPIQ Q P+A+ RD++
Sbjct: 236 RHKLNLRVSGAAPPRPGSSFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIG 295
Query: 217 IAKTGSGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275
IAKTGSGKT ++ P IH+ + +P GP +++ PTREL QI E +FGK+ +
Sbjct: 296 IAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNL 355
Query: 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 335
+YGG Q K + G +IVV TPGRL D ++ + +L +V+YLV DEADRM DM
Sbjct: 356 RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDM 415
Query: 336 GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ 395
GFE Q+R I V RQTL+++AT+ +++ K+A D+L++P++V G++ E AN+ +TQ
Sbjct: 416 GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGE--ANEDVTQ 473
Query: 396 HIEVL--APMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDK 452
+E+ P + +++ GS +++F + K ++LA NL ++ +HGD
Sbjct: 474 IVEIFPSGPSKWNWLTRRLVEFTSSGS-VLLFVTKKANAEELANNLKQEDHNLGLLHGDM 532
Query: 453 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXX 512
QSER+ V+++F+ P+LVATDVAARGLDI I+ V+NYD ++ + HRI
Sbjct: 533 DQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRA 592
Query: 513 XXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA 552
VAYT +DS +A DL++ LEGA Q V +EL D+A
Sbjct: 593 GEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLA 632
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 762 (273.3 bits), Expect = 9.5e-78, Sum P(2) = 9.5e-78
Identities = 175/426 (41%), Positives = 257/426 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G+ PP SF ++ + ++ PTP+Q + PI + RD++A A+TG
Sbjct: 210 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 269
Query: 222 SGKTLGYLLP--GFIH-------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
SGKT +LLP I+ L+ + + R G P LVL+PTRELA QI +EA
Sbjct: 270 SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 329
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF SR+ +YGGA G Q++D++RG ++VATPGRL D++E +I L+ YLVLD
Sbjct: 330 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 389
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR+IV++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 390 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 449
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPG--SKIIVFCSTKKMCDQLARNLTR 441
V + N ITQ + + DK L +L + E G S +VF TKK D L L
Sbjct: 450 VGSTSEN--ITQKVVWVEESDKRSFLLDLLNATESGKDSLTLVFVETKKGADSLEDFLYH 507
Query: 442 Q-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVE 500
+ + +IHGD+SQ +R+ L+QFR+G+SP+LVAT VAARGLDI +++ V+N+D P+ +E
Sbjct: 508 EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIE 567
Query: 501 DYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS----RGG 556
+YVHRI +A +FF +++ DL+ LL AKQ+VP L +MA +G
Sbjct: 568 EYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHYKGS 627
Query: 557 GMGRPR 562
GR +
Sbjct: 628 SRGRSK 633
Score = 39 (18.8 bits), Expect = 9.5e-78, Sum P(2) = 9.5e-78
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 82 GYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARG 115
G + DN GG + G + R ++ +G
Sbjct: 18 GLDLNSSDNQSGGSTASKGRYIPPHLRNREATKG 51
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 762 (273.3 bits), Expect = 9.5e-78, Sum P(2) = 9.5e-78
Identities = 173/424 (40%), Positives = 256/424 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G+ PP SF ++ + ++ PTP+Q + PI + RD++A A+TG
Sbjct: 168 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 227
Query: 222 SGKTLGYLLP--GFIH-------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
SGKT +LLP I+ L+ + + R G P LVL+PTRELA QI +EA
Sbjct: 228 SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 287
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF SR+ +YGGA G Q++D++RG ++VATPGRL D++E +I L+ YLVLD
Sbjct: 288 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 347
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR+IV++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 348 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 407
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
V + N ITQ + + DK L +L + S +VF TKK D L L +
Sbjct: 408 VGSTSEN--ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 465
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ +IHGD+SQ +R+ L+QFR+G+SP+LVAT VAARGLDI +++ V+N+D P+ +E+Y
Sbjct: 466 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 525
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS----RGGGM 558
VHRI +A +FF ++++ DL+ LL AKQ+VP L +MA +G
Sbjct: 526 VHRIGRTGRVGNLGLATSFFNERNANITKDLLDLLVEAKQEVPSWLENMAYEHHYKGSSR 585
Query: 559 GRPR 562
GR +
Sbjct: 586 GRSK 589
Score = 39 (18.8 bits), Expect = 9.5e-78, Sum P(2) = 9.5e-78
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 82 GYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARG 115
G + DN GG + G + R ++ +G
Sbjct: 18 GLDLNSSDNQSGGSTASKGRYIPPHLRNREATKG 51
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 161/400 (40%), Positives = 244/400 (61%)
Query: 159 RHEVT--VSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
RH++ VSG P P SF GF +L+ ++ + ++ PTPIQ Q P+A+ RD++
Sbjct: 238 RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIG 297
Query: 217 IAKTGSGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275
IAKTGSGKT ++ P IH+ + +P GP +++ PTREL QI E +FGK+ +
Sbjct: 298 IAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNL 357
Query: 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 335
+YGG Q K + G +IVV TPGRL D ++ + +L +V+YLV DEADRM DM
Sbjct: 358 RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDM 417
Query: 336 GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ 395
GFE Q+R I V RQTL+++AT+ +++ K+A D+L++P++V G++ E AN+ +TQ
Sbjct: 418 GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGE--ANEDVTQ 475
Query: 396 HIEVL--APMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDK 452
+E+ P + +++ GS +++F + K ++LA NL ++ +HGD
Sbjct: 476 IVEIFPSGPSKWNWLTRRLVEFTSSGS-VLLFVTKKANAEELANNLKQEDHNLGLLHGDM 534
Query: 453 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXX 512
QSER+ V+++F+ P+LVATDVAARGLDI I+ V+NYD ++ + HRI
Sbjct: 535 DQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRA 594
Query: 513 XXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA 552
VAYT +DS +A DL++ LEGA Q V +EL D+A
Sbjct: 595 GEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLA 634
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 161/400 (40%), Positives = 244/400 (61%)
Query: 159 RHEVT--VSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
RH++ VSG P P SF GF +L+ ++ + ++ PTPIQ Q P+A+ RD++
Sbjct: 231 RHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIG 290
Query: 217 IAKTGSGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275
IAKTGSGKT ++ P IH+ + +P GP +++ PTREL QI E +FGK+ +
Sbjct: 291 IAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNL 350
Query: 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 335
+YGG Q K + G +IVV TPGRL D ++ + +L +V+YLV DEADRM DM
Sbjct: 351 RSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDM 410
Query: 336 GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ 395
GFE Q+R I V RQTL+++AT+ +++ K+A D+L++P++V G++ E AN+ +TQ
Sbjct: 411 GFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGE--ANEDVTQ 468
Query: 396 HIEVL--APMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDK 452
+E+ P + +++ GS +++F + K ++LA NL ++ +HGD
Sbjct: 469 IVEIFPSGPSKWNWLTRRLVEFTSSGS-VLLFVTKKANAEELANNLKQEDHNLGLLHGDM 527
Query: 453 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXX 512
QSER+ V+++F+ P+LVATDVAARGLDI I+ V+NYD ++ + HRI
Sbjct: 528 DQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRA 587
Query: 513 XXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA 552
VAYT +DS +A DL++ LEGA Q V +EL D+A
Sbjct: 588 GEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLA 627
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 761 (272.9 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 173/424 (40%), Positives = 256/424 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G+ PP SF ++ + ++ PTP+Q + PI + RD++A A+TG
Sbjct: 168 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 227
Query: 222 SGKTLGYLLP--GFIH-------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
SGKT +LLP I+ L+ + + R G P LVL+PTRELA QI +EA
Sbjct: 228 SGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 287
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF SR+ +YGGA G Q++D++RG ++VATPGRL D++E +I L+ YLVLD
Sbjct: 288 KFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 347
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR+IV++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 348 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 407
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
V + N ITQ + + +DK L +L + S +VF TKK D L L +
Sbjct: 408 VGSTSEN--ITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 465
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ +IHGD+SQ +R+ L+QFR+G+SP+LVAT VAARGLDI +++ V+N+D P+ +E+Y
Sbjct: 466 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 525
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS----RGGGM 558
VHRI +A +FF +++ DL+ LL AKQ+VP L +MA +G
Sbjct: 526 VHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAFEHHYKGSSR 585
Query: 559 GRPR 562
GR +
Sbjct: 586 GRSK 589
Score = 39 (18.8 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 82 GYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARG 115
G + DN GG + G + R ++ +G
Sbjct: 18 GLDLNSSDNQSGGSTASKGRYIPPHLRNREATKG 51
Score = 38 (18.4 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 84 SPENED--NSYGGRDTNAGSKLEAGTRGNQSARG 115
S +++D +S+G R + G G RG+ S RG
Sbjct: 62 SSKDKDAYSSFGSRGDSRGKSSFFGDRGSGS-RG 94
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 761 (272.9 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 173/424 (40%), Positives = 256/424 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G+ PP SF ++ + ++ PTP+Q + PI + RD++A A+TG
Sbjct: 168 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 227
Query: 222 SGKTLGYLLP--GFIH-------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
SGKT +LLP I+ L+ + + R G P LVL+PTRELA QI +EA
Sbjct: 228 SGKTAAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 287
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF SR+ +YGGA G Q++D++RG ++VATPGRL D++E +I L+ YLVLD
Sbjct: 288 KFSYRSRVRPCVVYGGAEIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 347
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR+IV++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 348 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 407
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
V + N ITQ + + +DK L +L + S +VF TKK D L L +
Sbjct: 408 VGSTSEN--ITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 465
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ +IHGD+SQ +R+ L+QFR+G+SP+LVAT VAARGLDI +++ V+N+D P+ +E+Y
Sbjct: 466 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 525
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS----RGGGM 558
VHRI +A +FF +++ DL+ LL AKQ+VP L +MA +G
Sbjct: 526 VHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAFEHHYKGSSR 585
Query: 559 GRPR 562
GR +
Sbjct: 586 GRSK 589
Score = 39 (18.8 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 82 GYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARG 115
G + DN GG + G + R ++ +G
Sbjct: 18 GLDLNSSDNQTGGSTASKGRYIPPHLRNREATKG 51
Score = 38 (18.4 bits), Expect = 1.5e-77, Sum P(2) = 1.5e-77
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 84 SPENED--NSYGGRDTNAGSKLEAGTRGNQSARG 115
S +++D +S+G R + G G RG+ S RG
Sbjct: 62 SSKDKDAYSSFGSRGDSRGKSSFFGDRGSGS-RG 94
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 759 (272.2 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 173/424 (40%), Positives = 255/424 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G+ PP SF ++ + ++ PTP+Q + PI + RD++A A+TG
Sbjct: 167 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 226
Query: 222 SGKTLGYLLP--GFIH-------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
SGKT +LLP I+ L+ + + R G P LVL+PTRELA QI +EA
Sbjct: 227 SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 286
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF SR+ +YGGA G Q++D++RG ++VATPGRL D++E +I L+ YLVLD
Sbjct: 287 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 346
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR+IV++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 347 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 406
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
V + N ITQ + + DK L +L + S +VF TKK D L L +
Sbjct: 407 VGSTSEN--ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 464
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ +IHGD+SQ +R+ L+QFR+G+SP+LVAT VAARGLDI +++ V+N+D P+ +E+Y
Sbjct: 465 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 524
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS----RGGGM 558
VHRI +A +FF +++ DL+ LL AKQ+VP L +MA +G
Sbjct: 525 VHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHYKGSSR 584
Query: 559 GRPR 562
GR +
Sbjct: 585 GRSK 588
Score = 39 (18.8 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 82 GYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARG 115
G + DN GG + G + R ++ +G
Sbjct: 18 GLDLNSSDNQSGGSTASKGRYIPPHLRNREATKG 51
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 759 (272.2 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 173/424 (40%), Positives = 255/424 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G+ PP SF ++ + ++ PTP+Q + PI + RD++A A+TG
Sbjct: 168 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 227
Query: 222 SGKTLGYLLP--GFIH-------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
SGKT +LLP I+ L+ + + R G P LVL+PTRELA QI +EA
Sbjct: 228 SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 287
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF SR+ +YGGA G Q++D++RG ++VATPGRL D++E +I L+ YLVLD
Sbjct: 288 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 347
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR+IV++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 348 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 407
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
V + N ITQ + + DK L +L + S +VF TKK D L L +
Sbjct: 408 VGSTSEN--ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 465
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ +IHGD+SQ +R+ L+QFR+G+SP+LVAT VAARGLDI +++ V+N+D P+ +E+Y
Sbjct: 466 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 525
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS----RGGGM 558
VHRI +A +FF +++ DL+ LL AKQ+VP L +MA +G
Sbjct: 526 VHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHYKGSSR 585
Query: 559 GRPR 562
GR +
Sbjct: 586 GRSK 589
Score = 39 (18.8 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 82 GYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARG 115
G + DN GG + G + R ++ +G
Sbjct: 18 GLDLNSSDNQSGGSTASKGRYIPPHLRNREATKG 51
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 759 (272.2 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 173/424 (40%), Positives = 255/424 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G+ PP SF ++ + ++ PTP+Q + PI + RD++A A+TG
Sbjct: 168 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 227
Query: 222 SGKTLGYLLP--GFIH-------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
SGKT +LLP I+ L+ + + R G P LVL+PTRELA QI +EA
Sbjct: 228 SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 287
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF SR+ +YGGA G Q++D++RG ++VATPGRL D++E +I L+ YLVLD
Sbjct: 288 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 347
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR+IV++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 348 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 407
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
V + N ITQ + + DK L +L + S +VF TKK D L L +
Sbjct: 408 VGSTSEN--ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 465
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ +IHGD+SQ +R+ L+QFR+G+SP+LVAT VAARGLDI +++ V+N+D P+ +E+Y
Sbjct: 466 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 525
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS----RGGGM 558
VHRI +A +FF +++ DL+ LL AKQ+VP L +MA +G
Sbjct: 526 VHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHYKGSSR 585
Query: 559 GRPR 562
GR +
Sbjct: 586 GRSK 589
Score = 39 (18.8 bits), Expect = 2.0e-77, Sum P(2) = 2.0e-77
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 82 GYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARG 115
G + DN GG + G + R ++ +G
Sbjct: 18 GLDLNSSDNQSGGSTASKGRYIPPHLRNREATKG 51
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 734 (263.4 bits), Expect = 1.1e-76, Sum P(2) = 1.1e-76
Identities = 165/397 (41%), Positives = 238/397 (59%)
Query: 165 SGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGK 224
+ + + P SF LL + +A ++ PTP+Q + PI L++RD++A A+TGSGK
Sbjct: 238 TSEHICAPLNSFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGK 297
Query: 225 TLGYLLP--GFIHLKRCRNDP---RLG------PTVLVLSPTRELATQIQDEAVKFGKSS 273
T +L P I L P + G P LVL+PTRELA QI DEA KF S
Sbjct: 298 TAAFLFPIISGILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSYGS 357
Query: 274 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 333
+S +YGGA Q+ ++DRG DI+VAT GRL D+L R+SL+++ YLVLDEADRML
Sbjct: 358 PVSSVVIYGGAEVFHQINELDRGCDILVATTGRLVDLLMRGRVSLSKIKYLVLDEADRML 417
Query: 334 DMGFEPQIRKIVKE--VPA-R-RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAA 389
DMGFEPQIR+I+ E +P R RQTLM++AT+P++++ +AAD L N + + +G V
Sbjct: 418 DMGFEPQIRQIISEFDMPGCRDRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVV---GT 474
Query: 390 NKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAI 448
+ ITQ IE + DK+ L L + ++F TK+ CD L L R F I
Sbjct: 475 TQNITQRIEYVVEEDKNSYLLDYLSGLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCI 534
Query: 449 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXX 508
HGD +Q ER+ L FR+ +P LVATD+A+RGL I ++ +V+N+D PT + YVHRI
Sbjct: 535 HGDLTQPERENALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGR 594
Query: 509 XXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVP 545
+A +FF +++ ++L+KL++ + Q +P
Sbjct: 595 TGRAGKKGLAISFFNEKNKPVGAELLKLMKASNQDIP 631
Score = 57 (25.1 bits), Expect = 1.1e-76, Sum P(2) = 1.1e-76
Identities = 21/64 (32%), Positives = 28/64 (43%)
Query: 80 RHGY-SPE--NEDNSYGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGG 136
R Y SP +NS GG ++ + G R RG S++ PN + S G QGG
Sbjct: 105 RDNYKSPSFSRNNNSNGGGSSSGSGGWDNGPREQGPPRGNSY-SYS-PNNSFSRGGNQGG 162
Query: 137 SSTR 140
R
Sbjct: 163 YGNR 166
Score = 44 (20.5 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 18/60 (30%), Positives = 24/60 (40%)
Query: 82 GYSPEN---EDNSYGGRDTNAGSKLEAGTRGNQSARGGPVQ-SHNIPNGTASVGVGQGGS 137
GY N E+NS ++ K + +R N S GG S NG G +G S
Sbjct: 86 GYRGGNNFRENNSNNNNNSRDNYKSPSFSRNNNSNGGGSSSGSGGWDNGPREQGPPRGNS 145
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 681 (244.8 bits), Expect = 1.1e-76, Sum P(2) = 1.1e-76
Identities = 146/328 (44%), Positives = 213/328 (64%)
Query: 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGR 306
P LVL+PTRELA QI DEA KF SR+ +YGGA G Q++D++RG ++VATPGR
Sbjct: 315 PISLVLAPTRELALQIYDEARKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 374
Query: 307 LNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWP 362
L D++E +I L+ YLVLDEADRMLDMGFEPQIR+IV++ +P + RQT+M++AT+P
Sbjct: 375 LVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGSRQTMMFSATFP 434
Query: 363 REVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKI 422
+E++ +A D L + + +G V + N ITQ + + DK L +L + S
Sbjct: 435 KEIQILARDFLEEYIFLAVGRVGSTSEN--ITQKVVWVEENDKRSFLLDLLNATGKDSLT 492
Query: 423 IVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARG 481
+VF TKK D L L R+ + +IHGD+SQ +R+ L+QFR+GR P++VAT VAARG
Sbjct: 493 LVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPIMVATAVAARG 552
Query: 482 LDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAK 541
LDI +++ V+N+D P+ +E+YVHRI +A +F+ D++S DL+ +L AK
Sbjct: 553 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNSNITKDLLDILVEAK 612
Query: 542 QQVPRELRDMA----SRGGGMGRPRRWA 565
Q+VP L ++A + GRP+R++
Sbjct: 613 QEVPSWLENLAYEHQHKSTNRGRPKRFS 640
Score = 110 (43.8 bits), Expect = 1.1e-76, Sum P(2) = 1.1e-76
Identities = 24/70 (34%), Positives = 37/70 (52%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G P SF ++ + + ++ PTP+Q + PI RD++A A+TG
Sbjct: 211 VEATGTNSPGHIESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTG 270
Query: 222 SGKTLGYLLP 231
SGKT +LLP
Sbjct: 271 SGKTAAFLLP 280
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 770 (276.1 bits), Expect = 1.9e-76, P = 1.9e-76
Identities = 169/408 (41%), Positives = 236/408 (57%)
Query: 154 EAYRRRHEVTVS---GDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQ 210
+ Y ++H ++ + E P + FD +L + N + PTPIQA +WP L
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 211 SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270
RD+V IA+TGSGKT+ + +P +L +D + P VLV+SPTRELA Q +
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGL-SDNKSVPRVLVVSPTRELAIQTYENLNSLI 260
Query: 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 330
+ + + +YGGAPK Q + + +++ TPGRL D++ I +QV YLVLDEAD
Sbjct: 261 QGTNLKAVVVYGGAPKSEQARAA-KNASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEAD 319
Query: 331 RMLDMGFEPQIRKIVKEVP-----ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVD 385
RMLD GFE IR I+ P RQT+ ++ATWP VR +AA L +PV++ IG+ D
Sbjct: 320 RMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGS-D 378
Query: 386 ELAANKAITQHIEVLA-PMDKHRRLEQILRSQ-EPGSK---IIVFCSTKKMCDQLARNLT 440
ELAA++ ITQ +E+L P K R L+ +LR G K I++F KK ++ L
Sbjct: 379 ELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLA 438
Query: 441 RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVE 500
R++ IHGD SQ R LN F++G+ PVLVATDVAARGLDI +++V+N FP +E
Sbjct: 439 RKYNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIE 498
Query: 501 DYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPREL 548
DYVHRI A TFF QD +A +L+ +L AKQ +P L
Sbjct: 499 DYVHRIGRTGRANTKGTAITFFTPQDKSHAGELVNVLRQAKQDIPEGL 546
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 175/427 (40%), Positives = 257/427 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V V+G+ PP SF ++ + ++ PTP+Q + PI + RD++A A+TG
Sbjct: 168 VEVTGNNCPPHIESFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 227
Query: 222 SGKTLGYLLP--GFIH-------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
SGKT +LLP I+ LK + R G P LVL+PTRELA QI +EA
Sbjct: 228 SGKTAAFLLPILSQIYTDGPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEEAR 287
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF SR+ +YGGA G Q++D++RG ++VATPGRL D++E +I L+ YLVLD
Sbjct: 288 KFSYRSRVLPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 347
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR+I+++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 348 EADRMLDMGFEPQIRRIIEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 407
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
V + N ITQ + + DK L +L + S +VF TKK D L L +
Sbjct: 408 VGSTSEN--ITQKVVWVEEADKRSFLLDLLNATGTDSLTLVFVETKKGADSLEDFLYHEG 465
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ +IHGD+SQ +R+ L+QFR+G+SP+LVAT VAARGLDI +++ V+N+D P +E+Y
Sbjct: 466 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPGDIEEY 525
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS----RGGGM 558
VHRI +A +FF +++ + DL+ LL AKQ+VP L +MA +
Sbjct: 526 VHRIGRTGRVGNLGLATSFFNERNINISKDLLDLLVEAKQEVPSWLENMAYEHHYKSSNR 585
Query: 559 GRPRRWA 565
GR RR++
Sbjct: 586 GRSRRFS 592
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 176/424 (41%), Positives = 255/424 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G PP +F ++ + ++ PTP+Q + PI RD++A A+TG
Sbjct: 163 VEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTG 222
Query: 222 SGKTLGYLLP--GFIH-------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
SGKT +LLP I+ LK + + R G P LVL+PTRELA QI +EA
Sbjct: 223 SGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 282
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF SR+ +YGGA G Q++D++RG ++VATPGRL D++E +I L+ YLVLD
Sbjct: 283 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 342
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR+IV++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 343 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 402
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
V + N ITQ + + +DK L IL + S +VF TKK D L L +
Sbjct: 403 VGSTSEN--ITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEG 460
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ +IHGD+SQ +R+ L+QFR+G+SP+LVAT VAARGLDI ++R V+N+D P+ +E+Y
Sbjct: 461 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEY 520
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS----RGGGM 558
VHRI +A +FF +++ DL+ LL AKQ+VP L +MA +GG
Sbjct: 521 VHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENMAYEHHYKGGSR 580
Query: 559 GRPR 562
GR +
Sbjct: 581 GRSK 584
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 176/424 (41%), Positives = 255/424 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G PP +F ++ + ++ PTP+Q + PI RD++A A+TG
Sbjct: 166 VEATGSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTG 225
Query: 222 SGKTLGYLLP--GFIH-------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
SGKT +LLP I+ LK + + R G P LVL+PTRELA QI +EA
Sbjct: 226 SGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 285
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF SR+ +YGGA G Q++D++RG ++VATPGRL D++E +I L+ YLVLD
Sbjct: 286 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 345
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR+IV++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 346 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 405
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
V + N ITQ + + +DK L IL + S +VF TKK D L L +
Sbjct: 406 VGSTSEN--ITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDFLYHEG 463
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ +IHGD+SQ +R+ L+QFR+G+SP+LVAT VAARGLDI ++R V+N+D P+ +E+Y
Sbjct: 464 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEY 523
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS----RGGGM 558
VHRI +A +FF +++ DL+ LL AKQ+VP L +MA +GG
Sbjct: 524 VHRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENMAYEHHYKGGSR 583
Query: 559 GRPR 562
GR +
Sbjct: 584 GRSK 587
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 174/424 (41%), Positives = 257/424 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G+ PP SF ++ + ++ PTP+Q + PI + RD++A A+TG
Sbjct: 167 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 226
Query: 222 SGKTLGYLLP--GFIH-------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
SGKT +LLP I+ L+ + + + G P LVL+PTRELA QI +EA
Sbjct: 227 SGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEAR 286
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF SR+ +YGGA G Q++D++RG ++VATPGRL D++E +I L+ YLVLD
Sbjct: 287 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 346
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR+IV++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 347 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 406
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
V + N ITQ + + DK L +L + S I+VF TKK D L L +
Sbjct: 407 VGSTSEN--ITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEG 464
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ +IHGD+SQ +R+ L+QFR+G+SP+LVAT VAARGLDI +++ V+N+D P+ +E+Y
Sbjct: 465 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 524
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS----RGGGM 558
VHRI +A +FF +++ DL+ LL AKQ+VP L +MA +GG
Sbjct: 525 VHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAFEHHYKGGSR 584
Query: 559 GRPR 562
GR +
Sbjct: 585 GRSK 588
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
Identities = 174/424 (41%), Positives = 257/424 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G+ PP SF ++ + ++ PTP+Q + PI + RD++A A+TG
Sbjct: 166 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 225
Query: 222 SGKTLGYLLP--GFIH-------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
SGKT +LLP I+ L+ + + + G P LVL+PTRELA QI +EA
Sbjct: 226 SGKTAAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEAR 285
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF SR+ +YGGA G Q++D++RG ++VATPGRL D++E +I L+ YLVLD
Sbjct: 286 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 345
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR+IV++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 346 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 405
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
V + N ITQ + + DK L +L + S I+VF TKK D L L +
Sbjct: 406 VGSTSEN--ITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDFLYHEG 463
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ +IHGD+SQ +R+ L+QFR+G+SP+LVAT VAARGLDI +++ V+N+D P+ +E+Y
Sbjct: 464 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 523
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS----RGGGM 558
VHRI +A +FF +++ DL+ LL AKQ+VP L +MA +GG
Sbjct: 524 VHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAFEHHYKGGSR 583
Query: 559 GRPR 562
GR +
Sbjct: 584 GRSK 587
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 174/426 (40%), Positives = 245/426 (57%)
Query: 156 YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
+R++H V + G P PF F FP + + + GF++PT IQ QSWPI L D+V
Sbjct: 94 WRKKHNVLIEGKSQPNPFQKFTDYEFP-RMFQHIFQ-GFTAPTVIQGQSWPIILGGNDLV 151
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRLG--PTVLVLSPTRELATQIQDEAVKFGKSS 273
+A TGSGKTL +LLP + + P G P VLV++PTRELA QI++ + +
Sbjct: 152 GLAATGSGKTLAFLLPALLKIISLPKRPSYGATPLVLVMAPTRELAQQIEEVCKTSIRGT 211
Query: 274 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 333
I C YGG K Q + + GVDIV+ TPGRLND+L R+ L+ V YLVLDEADRML
Sbjct: 212 SIRQLCAYGGLGKIDQSRILRNGVDIVIGTPGRLNDLL--RKHHLSSVQYLVLDEADRML 269
Query: 334 DMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAI 393
DMGF PQI ++ ++P RQTLM++ATWP+EV+ +A+ L +P+++ +G+ EL + +
Sbjct: 270 DMGFMPQIESLIDQIPKERQTLMFSATWPKEVKLLASKFLKDPIKITVGS-QELTGSINV 328
Query: 394 TQHI---EVLAPMDK----HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAA 446
TQHI + L+ + + + +IL + +P + +IVFC+ K CD L+ Q
Sbjct: 329 TQHIVNIDDLSDLQSDDLIYDEINKILTA-DPTNTVIVFCNEKYKCDDFQHYLSTQKNVK 387
Query: 447 AI--HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVH 504
+I H K Q R+ L FR R +L+ATDVAARGLDI ++ V NY P +EDYVH
Sbjct: 388 SIVLHSGKDQRMRESGLKLFRDHRIRILIATDVAARGLDIPSVKAVFNYRLPGNIEDYVH 447
Query: 505 RIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA-------SRGGG 557
RI A+++ Q DL+K+L+ Q++P L A SR GG
Sbjct: 448 RIGRTGRAGKTGDAWSYVTTQTPNLR-DLVKILQRTNQKIPDFLEKFAVHSRQGISRYGG 506
Query: 558 MGRPRR 563
GR R
Sbjct: 507 GGRGGR 512
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
Identities = 175/425 (41%), Positives = 257/425 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G PP SF ++ + ++ PTP+Q + PI + RD++A A+TG
Sbjct: 146 VEATGSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 205
Query: 222 SGKTLGYLLP--GFIH-------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
SGKT +LLP I+ L+ + + R G P LVL+PTRELA QI +EA
Sbjct: 206 SGKTAAFLLPILSQIYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 265
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF SR+ +YGGA G Q++D++RG ++VATPGRL D++E +I L+ YLVLD
Sbjct: 266 KFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 325
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR+IV++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 326 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 385
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
V + N ITQ + + +DK L +L + S +VF TKK D L L +
Sbjct: 386 VGSTSEN--ITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEG 443
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ +IHGD+SQ +R+ L+QFR+G+SP+LVAT VAARGLDI +++ V+N+D P+ +E+Y
Sbjct: 444 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 503
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA----SRGGGM 558
VHRI +A +FF +++ DL+ LL AKQ+VP L +MA +GGG
Sbjct: 504 VHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEQHHKGGGS 563
Query: 559 -GRPR 562
GR +
Sbjct: 564 RGRSK 568
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
Identities = 191/505 (37%), Positives = 277/505 (54%)
Query: 85 PENEDNSYGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGGSSTRXXXX 144
P D S GG+ +AG RG + GG S G ++V + G+
Sbjct: 208 PAGFDGSEGGQ--SAGGNRSYNNRGERG--GGGYNSRWKEGGGSNVDYTKLGARDERLEV 263
Query: 145 XXXXXXXXXEAYRRRHEVTV--SGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQA 202
+ + ++ V +G VPP SFD + V A + PTP+Q
Sbjct: 264 ELFGVGNTGINFDKYEDIPVEATGQNVPPNITSFDDVQLTEIIRNNVALARYDKPTPVQK 323
Query: 203 QSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDP-----------RLGPTVLV 251
+ PI + RD++A A+TGSGKT +L+P + + P + P LV
Sbjct: 324 HAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGHVPPPQSTRQYSRRKQYPLGLV 383
Query: 252 LSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDIL 311
L+PTRELATQI +EA KF SR+ LYGG Q++++DRG ++VATPGRL D++
Sbjct: 384 LAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGRLEDMI 443
Query: 312 EMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV---P-ARRQTLMYTATWPREVRK 367
++ L + +LVLDEADRMLDMGFEPQIR+IV+++ P +RQTLM++AT+P+++++
Sbjct: 444 TRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSATFPKQIQE 503
Query: 368 IAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPG------SK 421
+A+D L N + + +G V + N ITQ I + DK L +L S G S
Sbjct: 504 LASDFLSNYIFLAVGRVGSTSEN--ITQTILWVYEPDKRSYLLDLLSSIRDGPEYTKDSL 561
Query: 422 IIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAAR 480
++F TKK D L L + +IHGD++Q ER+ L FR+G P+LVAT VAAR
Sbjct: 562 TLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVATAVAAR 621
Query: 481 GLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGA 540
GLDI ++ V+N+D P+ VE+YVHRI VA +FF +++ SDL++LL
Sbjct: 622 GLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLLELLIET 681
Query: 541 KQQVPRELRDMAS-RG-GGMGRPRR 563
KQ++P + DM+S RG GG R R
Sbjct: 682 KQEIPSFMEDMSSDRGHGGAKRAGR 706
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
Identities = 160/403 (39%), Positives = 241/403 (59%)
Query: 156 YRRRHE-VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDI 214
YR E +TV G P P ++ G ++L + G+ PTPIQ+Q+ P + RD+
Sbjct: 352 YRLEMEGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDL 411
Query: 215 VAIAKTGSGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 273
+ IAKTGSGKT+ +LLP F H+ R + GP ++++PTRELA QI E KF K+
Sbjct: 412 IGIAKTGSGKTIAFLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTL 471
Query: 274 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--RIS-LNQVSYLVLDEAD 330
+ C+YGG Q+ ++ RG +I+V TPGR+ D+L R++ L +V+Y+VLDEAD
Sbjct: 472 GLRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEAD 531
Query: 331 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAAN 390
RM DMGFEPQ+ +IV V RQT+M++AT+PR + +A +L P++V +G + ++
Sbjct: 532 RMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSD 591
Query: 391 KAITQHIEVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAI 448
+ QH+ V+ +K +L ++L QE GS +I+F ++ D L ++L R + ++
Sbjct: 592 --VEQHVIVIEEENKFLKLLELLGHYQEKGS-VIIFVDKQEHADGLLKDLMRASYPCLSL 648
Query: 449 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXX 508
HG Q +RD ++N F+ G +LVAT VAARGLD+K + +VVNY P EDYVHR
Sbjct: 649 HGGIDQYDRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGR 708
Query: 509 XXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDM 551
AYTF + +RYA D+IK LE + +P +L +
Sbjct: 709 TGRAGNKGFAYTFITEDQARYAGDIIKALELSGNPIPADLEKL 751
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 175/426 (41%), Positives = 257/426 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G PP SF ++ + ++ PTP+Q + PI + RD++A A+TG
Sbjct: 144 VEATGSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 203
Query: 222 SGKTLGYLLP--GFIH-------LKRCR-NDPRLG-----PTVLVLSPTRELATQIQDEA 266
SGKT +LLP I+ L+ + + R G P LVL+PTRELA QI +EA
Sbjct: 204 SGKTAAFLLPILSQIYADGPGDALRAMKATNGRYGRRKQYPISLVLAPTRELAVQIYEEA 263
Query: 267 VKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVL 326
KF SR+ +YGGA G Q++D++RG ++VATPGRL D++E +I L+ YLVL
Sbjct: 264 RKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVL 323
Query: 327 DEADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIG 382
DEADRMLDMGFEPQIR+IV++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 324 DEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 383
Query: 383 NVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ 442
V + N ITQ + + +DK L +L + S +VF TKK D L L +
Sbjct: 384 RVGSTSEN--ITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHE 441
Query: 443 -FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVED 501
+ +IHGD+SQ +R+ L+QFR+G+SP+LVAT VAARGLDI +++ V+N+D P+ +E+
Sbjct: 442 GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEE 501
Query: 502 YVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA----SRGGG 557
YVHRI +A +FF +++ DL+ LL AKQ+VP L +MA +GGG
Sbjct: 502 YVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEQHHKGGG 561
Query: 558 M-GRPR 562
GR +
Sbjct: 562 SRGRSK 567
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 172/424 (40%), Positives = 254/424 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G+ PP +F ++ + ++ PTP+Q + PI + RD++A A+TG
Sbjct: 167 VEATGNNCPPHIENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 226
Query: 222 SGKTLGYLLP--GFIH-------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
SGKT +LLP I+ LK + + R G P LVL+PTRELA QI +EA
Sbjct: 227 SGKTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 286
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF SR+ +YGGA Q++D++RG ++VATPGRL D++E +I L+ YLVLD
Sbjct: 287 KFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 346
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR+IV++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 347 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 406
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
V + N ITQ + + +DK L +L + S +VF TKK D L L ++
Sbjct: 407 VGSTSEN--ITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQER 464
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ +IHGD+SQ +R+ L+QFR+GR P+LVAT VAARGLDI +++ V+N+D P+ +E+Y
Sbjct: 465 YACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEY 524
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS----RGGGM 558
VHRI +A +FF +++ DL+ LL AKQ+VP L MA +G
Sbjct: 525 VHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAKQEVPSWLESMAYEHHYKGSSR 584
Query: 559 GRPR 562
GR +
Sbjct: 585 GRSK 588
>ZFIN|ZDB-GENE-030131-6215 [details] [associations]
symbol:ddx23 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 23" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-6215
GO:GO:0005524 GO:GO:0003676 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
CTD:9416 HOGENOM:HOG000268796 HOVERGEN:HBG102054 OrthoDB:EOG46T312
EMBL:CR936486 EMBL:CR354537 EMBL:BC060524 IPI:IPI00509665
RefSeq:NP_956176.1 UniGene:Dr.78688 STRING:Q6P9Z2
Ensembl:ENSDART00000019620 GeneID:334283 KEGG:dre:334283
InParanoid:Q6P9Z2 NextBio:20810336 Uniprot:Q6P9Z2
Length = 807
Score = 443 (161.0 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 85/203 (41%), Positives = 128/203 (63%)
Query: 156 YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
+R + +T G ++P P ++ PP +L + G+ PTPIQ Q+ PI LQ+RDI+
Sbjct: 360 FREDYSITTKGGKIPNPIRNWKEYSLPPHILEVIEKCGYKDPTPIQRQAIPIGLQNRDII 419
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRL-----GPTVLVLSPTRELATQIQDEAVKFG 270
+A+TGSGKT +L+P + + R+ GP ++L+PTRELA QI++E +KFG
Sbjct: 420 GVAETGSGKTAAFLIPLLVWITTLPKIDRIEDSDQGPYAIILAPTRELAQQIEEETIKFG 479
Query: 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 330
K I + GG + Q + G +IV+ATPGRL D+LE R + L++ +Y+VLDEAD
Sbjct: 480 KPLGIRTVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEAD 539
Query: 331 RMLDMGFEPQIRKIVKEVPARRQ 353
RM+DMGFEP ++KI++ +P Q
Sbjct: 540 RMIDMGFEPDVQKILEYIPVTNQ 562
Score = 343 (125.8 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 76/200 (38%), Positives = 117/200 (58%)
Query: 352 RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ 411
RQT+M+TAT P V ++A L P V IG+ + ++ + Q + +++ +K ++L +
Sbjct: 587 RQTVMFTATMPPAVERLARSYLRRPAVVYIGSAGK--PHERVEQKVILMSEGEKRKKLLE 644
Query: 412 ILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRS 469
+L S EP II+F + KK CD LA++L + + A +HG K Q +R++ L+ +AG
Sbjct: 645 VLASGFEP--PIIIFVNQKKGCDVLAKSLEKMGYNACTLHGGKGQEQREFALSNLKAGAK 702
Query: 470 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRY 529
+LVATDVA RG+DI+D+ +V+NYD +EDY+HRI VA TF +DS
Sbjct: 703 DILVATDVAGRGIDIQDVSMVLNYDMAKNIEDYIHRIGRTGRAGKSGVAMTFLTKEDSSV 762
Query: 530 ASDLIK-LLEGAKQQVPREL 548
DL + +LE P EL
Sbjct: 763 FYDLKQAILESPVSTCPPEL 782
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 156/401 (38%), Positives = 242/401 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
+ + G + P P S+ G + + +++ G+ PT IQAQ+ P RD++ +AKTG
Sbjct: 406 IKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTG 465
Query: 222 SGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCL 280
SGKT+ +LLP F H+K R GP ++++PTRELA QI E F K I C
Sbjct: 466 SGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCA 525
Query: 281 YGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--RIS-LNQVSYLVLDEADRMLDMGF 337
YGGAP Q+ D+ RG +IVV TPGR+ D+L R++ L++ +YLVLDEADRM D+GF
Sbjct: 526 YGGAPIKDQIADLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGF 585
Query: 338 EPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI 397
EPQ+ +I+ + RQT++++AT+PR + +A +L PV++ +G +A+ + Q +
Sbjct: 586 EPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASE--VEQIV 643
Query: 398 EVLAPMDKHRRLEQILR---SQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKS 453
EV K RL ++L + + + +VF ++ D L +L ++ + + +IHG K
Sbjct: 644 EVRPEESKFSRLLELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKD 703
Query: 454 QSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXX 513
Q +RD ++ ++AG VL+AT V ARGLD+K +++VVNYD P +EDYVHR+
Sbjct: 704 QHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAG 763
Query: 514 XXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR 554
VA TF + +YA D+ K L+ +KQ VP+EL+ +AS+
Sbjct: 764 HTGVAVTFITPEQEKYAVDIAKALKMSKQPVPKELQTLASQ 804
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
Identities = 174/394 (44%), Positives = 235/394 (59%)
Query: 172 PFMSFDATGFPPELLREVHNA--GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYL 229
P +SF F P ++++ GF+SPT IQ+ +WP+ RD++ IA+TGSGKTL +
Sbjct: 72 PIISFS---FLPPSNKDLYAPLDGFASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFG 128
Query: 230 LPGF---IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPK 286
LP + LK + R P +V+SPTRELA QI D+ VKF + I C++GG K
Sbjct: 129 LPCLKKVLDLKTKQKSCR--PLAVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKK 186
Query: 287 GPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVK 346
Q + + + +VVATPGRL D+ + L +V YLVLDEADRMLD GFE I+ I+
Sbjct: 187 DEQREAL-KSAAVVVATPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIIS 245
Query: 347 EVP-ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELA---ANKAITQHIEVLAP 402
+P ++RQT+M+TATWP VR +A+ + +PV V IG D A AN I Q +EV+ P
Sbjct: 246 PMPVSKRQTVMFTATWPPIVRNLASTFMTSPVTVTIGG-DPSADPRANSRIKQVVEVVKP 304
Query: 403 MDKHRRLEQILRSQEPGS--KIIVFCSTKKMCDQLARNL-TRQFGAAAIHGDKSQSERDY 459
+K +RL QIL + G+ K++ FC KK ++ R L T+ F A IHGD SQ ER
Sbjct: 305 HEKEQRLVQILNRHQRGTPDKVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFR 364
Query: 460 VLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAY 519
L F++G + VLVATDVAARGLDI +++VVN FP VEDYVHRI A
Sbjct: 365 SLEAFKSGAATVLVATDVAARGLDIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAI 424
Query: 520 TFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS 553
T F + D + LI +L+ A Q+VP L S
Sbjct: 425 TLFTETDKAQSGALINVLKAANQEVPEALLKFGS 458
>FB|FBgn0032690 [details] [associations]
symbol:CG10333 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0005682 "U5
snRNP" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014134
GO:GO:0022008 GO:GO:0005682 GO:GO:0003676 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
OMA:PIRNWKE FlyBase:FBgn0032690 EMBL:BT021222 RefSeq:NP_609888.2
UniGene:Dm.456 SMR:Q9VJ74 STRING:Q9VJ74 EnsemblMetazoa:FBtr0081072
GeneID:35112 KEGG:dme:Dmel_CG10333 UCSC:CG10333-RA
InParanoid:Q9VJ74 GenomeRNAi:35112 NextBio:791924 Uniprot:Q9VJ74
Length = 822
Score = 454 (164.9 bits), Expect = 2.9e-74, Sum P(3) = 2.9e-74
Identities = 89/199 (44%), Positives = 131/199 (65%)
Query: 156 YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
+R + VT+ G +P P S++ +GFP E++ + G+ PTPIQ Q+ PI LQ+RDI+
Sbjct: 376 FREDYNVTIKGGRIPNPIRSWNESGFPKEIIDIIDKVGYKEPTPIQRQAIPIGLQNRDII 435
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRL-----GPTVLVLSPTRELATQIQDEAVKFG 270
+A+TGSGKTL +L+P ++ RL GP ++++PTRELA QI++E KFG
Sbjct: 436 GVAETGSGKTLAFLIPLLSWIQSLPKIERLEDVDQGPYAIIMAPTRELAQQIEEETTKFG 495
Query: 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 330
+ I + GG + Q + G +IV+ATPGRL D+LE R + LNQ +Y+VLDEAD
Sbjct: 496 QPLGIRTVVVVGGLSREEQGFRLRLGCEIVIATPGRLIDVLENRYLVLNQCTYIVLDEAD 555
Query: 331 RMLDMGFEPQIRKIVKEVP 349
RM+DMGFEP ++KI++ +P
Sbjct: 556 RMIDMGFEPDVQKILEYMP 574
Score = 308 (113.5 bits), Expect = 2.9e-74, Sum P(3) = 2.9e-74
Identities = 71/199 (35%), Positives = 108/199 (54%)
Query: 352 RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ 411
RQT+M+TAT P V ++A L P V IG+V + + Q + ++ DK ++L +
Sbjct: 602 RQTVMFTATMPPAVERLARTYLRRPATVYIGSVGK--PTERTEQIVYMMGENDKRKKLME 659
Query: 412 ILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSP 470
IL S++ +I+F + KK D LA+ L + + + +HG K Q +R+Y L ++G
Sbjct: 660 IL-SRKIDPPVIIFVNQKKGADVLAKGLEKLGYNSCTLHGGKGQEQREYALAALKSGAKD 718
Query: 471 VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYA 530
+LVATDVA RG+DIKD+ +V+NYD +EDY HRI A +F DS
Sbjct: 719 ILVATDVAGRGIDIKDVSLVINYDMAKTIEDYTHRIGRTGRAGKTGCAISFVTKDDSALF 778
Query: 531 SDLIKLLEGAKQQV-PREL 548
DL + + + P EL
Sbjct: 779 YDLKQCVSASPVSTCPPEL 797
Score = 41 (19.5 bits), Expect = 2.9e-74, Sum P(3) = 2.9e-74
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 85 PENEDNSYGGRDTNAGSKLEAGTRGN 110
P+ + GGRD G +++ G RG+
Sbjct: 212 PDRRERG-GGRDR--GDRIDRGERGD 234
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 462 (167.7 bits), Expect = 3.0e-74, Sum P(2) = 3.0e-74
Identities = 90/199 (45%), Positives = 133/199 (66%)
Query: 156 YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
+R +++ G VP P +++ GFP E+ + V G+ PTPIQ Q+ PI LQ+RD++
Sbjct: 283 FREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQRQAIPIGLQNRDVI 342
Query: 216 AIAKTGSGKTLGYLLPGFIHL----KRCRNDPR-LGPTVLVLSPTRELATQIQDEAVKFG 270
+A+TGSGKT +LLP + + K R + R LGP ++++PTRELA QI++E KFG
Sbjct: 343 GVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTRELAQQIEEETNKFG 402
Query: 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 330
K I + GGA + Q + GV++V+ATPGRL D+LE R + LNQ +Y++LDEAD
Sbjct: 403 KLLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVLENRYLLLNQCTYVILDEAD 462
Query: 331 RMLDMGFEPQIRKIVKEVP 349
RMLDMGFEP ++K+++ +P
Sbjct: 463 RMLDMGFEPDVQKVLEYMP 481
Score = 315 (115.9 bits), Expect = 3.0e-74, Sum P(2) = 3.0e-74
Identities = 74/201 (36%), Positives = 110/201 (54%)
Query: 352 RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMD-KHRRLE 410
RQT+M+TAT + ++A L P V+IG+ + + + Q + + P D K ++L
Sbjct: 509 RQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGK--PTERVEQ-VVYMVPEDRKRKKLV 565
Query: 411 QILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGR 468
++L SQ +P II+F + KK D L++ LT+ F +HG K Q +R+Y L + G
Sbjct: 566 EVLESQFQP--PIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGT 623
Query: 469 SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSR 528
S +LVATDVA RG+D+KD+ +V+NYD +EDY HRI A TF D+
Sbjct: 624 SDILVATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTA 683
Query: 529 YASDLIKLL-EGAKQQVPREL 548
DL ++L E P EL
Sbjct: 684 VYFDLKQVLVESPVSSCPPEL 704
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 182/427 (42%), Positives = 248/427 (58%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V VSGD VP F+ GF P ++ V+ +G+S PTP+Q S P L +RD+++ A+TG
Sbjct: 127 VEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSCAQTG 186
Query: 222 SGKTLGYLLPGFIHLKRCRND----PRL--G-----PTVLVLSPTRELATQIQDEAVKFG 270
SGKT +LLP H+ D P G P LVLSPTRELA QI EA KF
Sbjct: 187 SGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEATKFS 246
Query: 271 KSSRISCTCLYGGAPK-GPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
S I LYGG Q+ + G I++ATPGRL DI+E I L YLVLDEA
Sbjct: 247 YKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDIIEQGFIGLAGCRYLVLDEA 306
Query: 330 DRMLDMGFEPQIRKIVKE-VPAR--RQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVD 385
DRMLDMGFEPQIRKIV + +P + R T M++AT+P+E++ +A D L N + + +G V
Sbjct: 307 DRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIFLAVGRVG 366
Query: 386 ELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FG 444
+ N I Q + + M+K L +IL ++ + ++VF TK+ ++LA L RQ
Sbjct: 367 STSEN--IEQRLLWVNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLNRQQIR 424
Query: 445 AAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVH 504
+ +IHGD Q ER+ L FR+G+ P+LVAT VAARGLDI ++R V+NYD P ++YVH
Sbjct: 425 SVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDSDEYVH 484
Query: 505 RIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASRG---GGM-GR 560
RI +A +FF D++ DL L+ + Q+VP L +A+ G GG G
Sbjct: 485 RIGRTGRCGNLGIATSFFNDKNRGIGRDLKNLIVESNQEVPEWLHQVAAEGRIGGGQRGG 544
Query: 561 PRRWAPT 567
RR+ T
Sbjct: 545 NRRFGAT 551
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 171/424 (40%), Positives = 253/424 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G+ PP +F ++ + ++ PTP+Q + PI + RD++A A+TG
Sbjct: 161 VEATGNNCPPHIENFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 220
Query: 222 SGKTLGYLLP--GFIH-------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
SG T +LLP I+ LK + + R G P LVL+PTRELA QI +EA
Sbjct: 221 SGCTAAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 280
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF SR+ +YGGA Q++D++RG ++VATPGRL D++E +I L+ YLVLD
Sbjct: 281 KFSYRSRVRPCVVYGGADTVQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 340
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR+IV++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 341 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 400
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
V + N ITQ + + +DK L +L + S +VF TKK D L L ++
Sbjct: 401 VGSTSEN--ITQKVVWVEELDKRSFLLDLLNATGRDSLTLVFVETKKGADSLENFLFQER 458
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ +IHGD+SQ +R+ L+QFR+GR P+LVAT VAARGLDI +++ V+N+D P+ +E+Y
Sbjct: 459 YACTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEY 518
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS----RGGGM 558
VHRI +A +FF +++ DL+ LL AKQ+VP L MA +G
Sbjct: 519 VHRIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAKQEVPSWLESMAYEHHYKGNSR 578
Query: 559 GRPR 562
GR +
Sbjct: 579 GRSK 582
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 159/398 (39%), Positives = 237/398 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
+TV G P P S+ G ++L + G+ PTPIQ Q+ P + RD++ IAKTG
Sbjct: 360 ITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTG 419
Query: 222 SGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCL 280
SGKT+ +LLP F H+ R+ + GP ++++PTRELA QI E KF K+ + C+
Sbjct: 420 SGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCV 479
Query: 281 YGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--RIS-LNQVSYLVLDEADRMLDMGF 337
YGG Q+ ++ RG +I+V TPGR+ D+L R++ L +V+Y+VLDEADRM DMGF
Sbjct: 480 YGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGF 539
Query: 338 EPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI 397
EPQ+ +IV V RQT+M++AT+PR + +A +L P++V +G + ++ + Q +
Sbjct: 540 EPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSD--VEQQV 597
Query: 398 EVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQS 455
V+ K +L ++L QE GS +I+F ++ D L ++L R + ++HG Q
Sbjct: 598 IVIEEEKKFLKLLELLGHYQESGS-VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656
Query: 456 ERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXX 515
+RD ++N F+ G +LVAT VAARGLD+K + +VVNY P EDYVHR
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNK 716
Query: 516 XVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS 553
AYTF + +RYA D+IK LE + VP +L + S
Sbjct: 717 GYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWS 754
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 159/398 (39%), Positives = 237/398 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
+TV G P P S+ G ++L + G+ PTPIQ Q+ P + RD++ IAKTG
Sbjct: 360 ITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTG 419
Query: 222 SGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCL 280
SGKT+ +LLP F H+ R+ + GP ++++PTRELA QI E KF K+ + C+
Sbjct: 420 SGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCV 479
Query: 281 YGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--RIS-LNQVSYLVLDEADRMLDMGF 337
YGG Q+ ++ RG +I+V TPGR+ D+L R++ L +V+Y+VLDEADRM DMGF
Sbjct: 480 YGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGF 539
Query: 338 EPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI 397
EPQ+ +IV V RQT+M++AT+PR + +A +L P++V +G + ++ + Q +
Sbjct: 540 EPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSD--VEQQV 597
Query: 398 EVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQS 455
V+ K +L ++L QE GS +I+F ++ D L ++L R + ++HG Q
Sbjct: 598 IVIEEEKKFLKLLELLGHYQESGS-VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656
Query: 456 ERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXX 515
+RD ++N F+ G +LVAT VAARGLD+K + +VVNY P EDYVHR
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNK 716
Query: 516 XVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS 553
AYTF + +RYA D+IK LE + VP +L + S
Sbjct: 717 GYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWS 754
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 159/398 (39%), Positives = 237/398 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
+TV G P P S+ G ++L + G+ PTPIQ Q+ P + RD++ IAKTG
Sbjct: 360 ITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTG 419
Query: 222 SGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCL 280
SGKT+ +LLP F H+ R+ + GP ++++PTRELA QI E KF K+ + C+
Sbjct: 420 SGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCV 479
Query: 281 YGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--RIS-LNQVSYLVLDEADRMLDMGF 337
YGG Q+ ++ RG +I+V TPGR+ D+L R++ L +V+Y+VLDEADRM DMGF
Sbjct: 480 YGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGF 539
Query: 338 EPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI 397
EPQ+ +IV V RQT+M++AT+PR + +A +L P++V +G + ++ + Q +
Sbjct: 540 EPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSD--VEQQV 597
Query: 398 EVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQS 455
V+ K +L ++L QE GS +I+F ++ D L ++L R + ++HG Q
Sbjct: 598 IVIEEEKKFLKLLELLGHYQESGS-VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656
Query: 456 ERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXX 515
+RD ++N F+ G +LVAT VAARGLD+K + +VVNY P EDYVHR
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNK 716
Query: 516 XVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS 553
AYTF + +RYA D+IK LE + VP +L + S
Sbjct: 717 GYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWS 754
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 159/398 (39%), Positives = 237/398 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
+TV G P P S+ G ++L + G+ PTPIQ Q+ P + RD++ IAKTG
Sbjct: 360 ITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTG 419
Query: 222 SGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCL 280
SGKT+ +LLP F H+ R+ + GP ++++PTRELA QI E KF K+ + C+
Sbjct: 420 SGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCV 479
Query: 281 YGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--RIS-LNQVSYLVLDEADRMLDMGF 337
YGG Q+ ++ RG +I+V TPGR+ D+L R++ L +V+Y+VLDEADRM DMGF
Sbjct: 480 YGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGF 539
Query: 338 EPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI 397
EPQ+ +IV V RQT+M++AT+PR + +A +L P++V +G + ++ + Q +
Sbjct: 540 EPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSD--VEQQV 597
Query: 398 EVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQS 455
V+ K +L ++L QE GS +I+F ++ D L ++L R + ++HG Q
Sbjct: 598 IVIEEEKKFLKLLELLGHYQESGS-VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656
Query: 456 ERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXX 515
+RD ++N F+ G +LVAT VAARGLD+K + +VVNY P EDYVHR
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNK 716
Query: 516 XVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS 553
AYTF + +RYA D+IK LE + VP +L + S
Sbjct: 717 GYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWS 754
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 159/398 (39%), Positives = 237/398 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
+TV G P P S+ G ++L + G+ PTPIQ Q+ P + RD++ IAKTG
Sbjct: 360 ITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTG 419
Query: 222 SGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCL 280
SGKT+ +LLP F H+ R+ + GP ++++PTRELA QI E KF K+ + C+
Sbjct: 420 SGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCV 479
Query: 281 YGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--RIS-LNQVSYLVLDEADRMLDMGF 337
YGG Q+ ++ RG +I+V TPGR+ D+L R++ L +V+Y+VLDEADRM DMGF
Sbjct: 480 YGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGF 539
Query: 338 EPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI 397
EPQ+ +IV V RQT+M++AT+PR + +A +L P++V +G + ++ + Q +
Sbjct: 540 EPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSD--VEQQV 597
Query: 398 EVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQS 455
V+ K +L ++L QE GS +I+F ++ D L ++L R + ++HG Q
Sbjct: 598 IVIEEEKKFLKLLELLGHYQESGS-VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656
Query: 456 ERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXX 515
+RD ++N F+ G +LVAT VAARGLD+K + +VVNY P EDYVHR
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNK 716
Query: 516 XVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS 553
AYTF + +RYA D+IK LE + VP +L + S
Sbjct: 717 GYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWS 754
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 159/398 (39%), Positives = 237/398 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
+TV G P P S+ G ++L + G+ PTPIQ Q+ P + RD++ IAKTG
Sbjct: 360 ITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTG 419
Query: 222 SGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCL 280
SGKT+ +LLP F H+ R+ + GP ++++PTRELA QI E KF K+ + C+
Sbjct: 420 SGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCV 479
Query: 281 YGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--RIS-LNQVSYLVLDEADRMLDMGF 337
YGG Q+ ++ RG +I+V TPGR+ D+L R++ L +V+Y+VLDEADRM DMGF
Sbjct: 480 YGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGF 539
Query: 338 EPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI 397
EPQ+ +IV V RQT+M++AT+PR + +A +L P++V +G + ++ + Q +
Sbjct: 540 EPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSD--VEQQV 597
Query: 398 EVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQS 455
V+ K +L ++L QE GS +I+F ++ D L ++L R + ++HG Q
Sbjct: 598 IVIEEEKKFLKLLELLGHYQESGS-VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656
Query: 456 ERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXX 515
+RD ++N F+ G +LVAT VAARGLD+K + +VVNY P EDYVHR
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNK 716
Query: 516 XVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS 553
AYTF + +RYA D+IK LE + VP +L + S
Sbjct: 717 GYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWS 754
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 747 (268.0 bits), Expect = 5.1e-74, P = 5.1e-74
Identities = 159/398 (39%), Positives = 237/398 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
+TV G P P S+ G ++L + G+ PTPIQ Q+ P + RD++ IAKTG
Sbjct: 360 ITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTG 419
Query: 222 SGKTLGYLLPGFIHLKRCRN-DPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCL 280
SGKT+ +LLP F H+ R+ + GP ++++PTRELA QI E KF K+ + C+
Sbjct: 420 SGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCV 479
Query: 281 YGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--RIS-LNQVSYLVLDEADRMLDMGF 337
YGG Q+ ++ RG +I+V TPGR+ D+L R++ L +V+Y+VLDEADRM DMGF
Sbjct: 480 YGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGF 539
Query: 338 EPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI 397
EPQ+ +IV V RQT+M++AT+PR + +A +L P++V +G + ++ + Q +
Sbjct: 540 EPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSD--VEQQV 597
Query: 398 EVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQS 455
V+ K +L ++L QE GS +I+F ++ D L ++L R + ++HG Q
Sbjct: 598 IVIEEEKKFLKLLELLGHYQESGS-VIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQY 656
Query: 456 ERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXX 515
+RD ++N F+ G +LVAT VAARGLD+K + +VVNY P EDYVHR
Sbjct: 657 DRDSIINDFKNGTCKLLVATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNK 716
Query: 516 XVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS 553
AYTF + +RYA D+IK LE + VP +L + S
Sbjct: 717 GYAYTFITEDQARYAGDIIKALELSGTAVPPDLEKLWS 754
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
Identities = 175/426 (41%), Positives = 248/426 (58%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V VSG ++ P F + LL+ + +G++ PTP+Q S PI RD++A A+TG
Sbjct: 158 VEVSGGDIEP-VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 222 SGKTLGYLLPGFIHLKRCRN--------DPRLG-------PTVLVLSPTRELATQIQDEA 266
SGKT G+L P + L + D +G PT L+L+PTREL QI +E+
Sbjct: 217 SGKTAGFLFP-ILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEES 275
Query: 267 VKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVL 326
KF S + +YGGA Q++ ID+G D++ ATPGRL D+++ RISL + +LVL
Sbjct: 276 RKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLIDRGRISLANIKFLVL 335
Query: 327 DEADRMLDMGFEPQIRKIVKEVPA----RRQTLMYTATWPREVRKIAADLLVNPVQVNIG 382
DEADRMLDMGFEPQIR IV+ RQTLM++AT+PR+++ +A D L + V +++G
Sbjct: 336 DEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVFLSVG 395
Query: 383 NVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ 442
V + N ITQ + + +K L IL + P ++F TK+M D L L
Sbjct: 396 RVGSTSEN--ITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLLNS 453
Query: 443 -FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVED 501
F A +IHGD++Q ER+ L FR+GR+ ++VAT VA+RGLDI ++ V+NYD PT ++D
Sbjct: 454 NFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDIDD 513
Query: 502 YVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA--SRGGGMG 559
YVHRI A FF + A +LI+LL+ A Q+ P L MA S GG G
Sbjct: 514 YVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAMARESSFGGNG 573
Query: 560 RPRRWA 565
R R++
Sbjct: 574 RGGRYS 579
Score = 146 (56.5 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 47/171 (27%), Positives = 73/171 (42%)
Query: 78 GQRHGYSPENEDNSYGGR-DTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASV-GVGQ- 134
G +P ++YGGR + N G G + RGG ++ G + G GQ
Sbjct: 57 GSSRSQTPSEFSSNYGGRREYNRGGHYGGGEGRQNNYRGGREGGYSNGGGYRNNRGFGQW 116
Query: 135 -------GGSSTRXXXXXXXXXXXXXEA-----YRRRHE--VTVSGDEVPPPFMSFDATG 180
G +T + + + + V VSG ++ P F +
Sbjct: 117 RDGQHVIGARNTLLERQLFGAVADGTKVSTGINFEKYDDIPVEVSGGDIEP-VNEFTSPP 175
Query: 181 FPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLP 231
LL+ + +G++ PTP+Q S PI RD++A A+TGSGKT G+L P
Sbjct: 176 LNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFP 226
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 173/429 (40%), Positives = 255/429 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G+ P SF ++ + ++ PTP+Q + PI + RD++A A+TG
Sbjct: 169 VEATGNNCPRHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 228
Query: 222 SGKTLGYLLP--GFIH-------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
SGKT +LLP I+ LK + + R G P LVL+PTRELA QI +EA
Sbjct: 229 SGKTAAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 288
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF SR+ +YGGA G Q++D++RG ++VATPGRL D++E +I L+ YLVLD
Sbjct: 289 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 348
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR+IV++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 349 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 408
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
V + N ITQ + + DK L +L + S +VF TKK D L L +
Sbjct: 409 VGSTSEN--ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 466
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ +IHGD+SQ +R+ L+QFR+G+SP+LVAT VAARGLDI +++ V+N+D P+ +E+Y
Sbjct: 467 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 526
Query: 503 VHRIXXXXXXXXXXV---AYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMAS----RG 555
VHRI + A +FF +++ DL+ LL AKQ+VP L +MA +G
Sbjct: 527 VHRIGRTGRVGNLGLIGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHYKG 586
Query: 556 GGMGRPRRW 564
GR + +
Sbjct: 587 SSRGRSKSY 595
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 160/403 (39%), Positives = 238/403 (59%)
Query: 156 YRRRHE-VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDI 214
YR E ++V G P P ++ G ++L + + PTPIQAQ+ P + RD+
Sbjct: 338 YRLELEGISVKGKGCPKPIKTWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDL 397
Query: 215 VAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL-GPTVLVLSPTRELATQIQDEAVKFGKSS 273
+ IAKTGSGKT+ +LLP F H+ R GP ++++PTRELA QI E KF KS
Sbjct: 398 IGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSL 457
Query: 274 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--RIS-LNQVSYLVLDEAD 330
+ C+YGG Q+ ++ RG +I+V TPGR+ D+L R++ L +V+Y+V+DEAD
Sbjct: 458 ALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVIDEAD 517
Query: 331 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAAN 390
RM DMGFEPQ+ +IV V RQT+M++AT+PR + +A +L PV+V +G + ++
Sbjct: 518 RMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRTMEALARRILSKPVEVQVGGRSVVCSD 577
Query: 391 KAITQHIEVLAPMDKHRRLEQIL-RSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAI 448
+ QH+ V+ K +L +IL QE GS +I+F ++ D L ++L + + ++
Sbjct: 578 --VEQHVIVIEEEKKFLKLLEILGHYQEKGS-VIIFVDKQEHADGLLKDLMKASYPCMSL 634
Query: 449 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXX 508
HG Q +RD ++N F+ G +LVAT VAARGLD+K + +VVNY P EDYVHR
Sbjct: 635 HGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSCPNHYEDYVHRAGR 694
Query: 509 XXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDM 551
AYTF + +RY+ D++K LE + VP EL +
Sbjct: 695 TGRAGNKGYAYTFITEGQARYSGDILKALELSGSSVPAELEQL 737
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 747 (268.0 bits), Expect = 2.5e-73, P = 2.5e-73
Identities = 158/400 (39%), Positives = 238/400 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
+ V G +VP P + G + L + GF+S T IQAQ+ P + RD++ +AKTG
Sbjct: 529 IKVRGLDVPKPVQKWSQCGLGIQTLDVIDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTG 588
Query: 222 SGKTLGYLLPGFIHLKRCRNDPRL-GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCL 280
SGKT+ +L+P F H+K R + GP L+++PTRELATQI + F K+ + C
Sbjct: 589 SGKTMAFLIPMFRHIKDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCA 648
Query: 281 YGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--RIS-LNQVSYLVLDEADRMLDMGF 337
YGGAP Q+ ++ RG +I+V TPGR+ D+L R++ L +V+Y+VLDEADRM DMGF
Sbjct: 649 YGGAPIKDQIAELKRGAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGF 708
Query: 338 EPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI 397
EPQ+ KI+ V RQT++++AT+PR + +A L P+++ +G +A ITQ +
Sbjct: 709 EPQVMKILSNVRPDRQTVLFSATFPRNMEALARKTLTKPIEIVVGGRSVVAPE--ITQIV 766
Query: 398 EVLAPMDKHRRLEQILRS-----QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGD 451
EV K RL ++L + + ++ ++F ++ D L R L R+ + +IHG
Sbjct: 767 EVCNEEKKFVRLLELLGNLYSTDENEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGG 826
Query: 452 KSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXX 511
K Q +RD + F+AG PVL+AT VAARGLD+K +++VVNYD P +EDYVHR
Sbjct: 827 KDQIDRDSTIEDFKAGIFPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGR 886
Query: 512 XXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDM 551
A TF + RY+ D+ K L+ + Q+VP ++ +
Sbjct: 887 AGNTGTAVTFLTEDQERYSVDIAKALKQSGQEVPEAVQKL 926
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 157/400 (39%), Positives = 234/400 (58%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
+ VSG +VP P + G +L + + PT IQ Q+ P+ + RD+V +AKTG
Sbjct: 366 IKVSGKDVPKPVQKWSLCGLTRPILDVIAKLEYDKPTAIQMQALPVIMSGRDVVGVAKTG 425
Query: 222 SGKTLGYLLPGFIHLKRCRNDP---RLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCT 278
SGKT+ +LLP F H+K +P GP L+L+PTRELA QI + F K+ +
Sbjct: 426 SGKTMAFLLPMFRHIKD--QEPVKDNEGPIGLILTPTRELAVQIFRDCKPFLKTLGLRAV 483
Query: 279 CLYGGAPKGPQLKDIDRGVDIVVATPGRLNDIL---EMRRISLNQVSYLVLDEADRMLDM 335
C YGG P Q+ D+ RG +IVVAT GR+ D+L + R +SL + +Y+VLDEADRM DM
Sbjct: 484 CAYGGPPIKDQIADLKRGAEIVVATTGRMIDLLAANQGRVVSLRRTTYIVLDEADRMFDM 543
Query: 336 GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ 395
GFEPQ+ KI V RQT++++AT P+ + + +L NPV++ +G +A+ ITQ
Sbjct: 544 GFEPQVMKIFANVRPDRQTVLFSATMPKIMDALVKKVLKNPVEIEVGGKSVVASE--ITQ 601
Query: 396 HIEVLAPMDKHRRLEQILRS---QEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGD 451
+E+ K RL ++L + + ++F ++ D+L R L R+ +G ++HG
Sbjct: 602 IVEIRDEKSKFNRLLELLGELYKDDDDVRSLIFVERQEKADELLRELLRKGYGCMSLHGG 661
Query: 452 KSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXX 511
K Q +RD ++ F++G PV++AT VAARGLD+K +++VVNYD P +EDYVHR
Sbjct: 662 KDQVDRDSTISDFKSGVCPVMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGR 721
Query: 512 XXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDM 551
A TF ++ A + K LE + Q VP +L +M
Sbjct: 722 AGNTGTAVTFVTEEQENCAIGIAKALEQSGQPVPEKLIEM 761
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 739 (265.2 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 160/401 (39%), Positives = 240/401 (59%)
Query: 156 YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
+R V ++G + P P S+ G ++ + + PT IQAQ+ P + RD++
Sbjct: 491 FRSELGVKITGKDCPKPIQSWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLI 550
Query: 216 AIAKTGSGKTLGYLLPGFIH-LKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR 274
IA+TGSGKTL +LLP F H L + ++ P G L++SPTRELA QI E KF K
Sbjct: 551 GIARTGSGKTLAFLLPMFRHILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLG 610
Query: 275 ISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDIL--EMRRIS-LNQVSYLVLDEADR 331
+ C+YGGA Q+ ++ RG DIVV TPGR+ DIL RRI+ L +V++LVLDEADR
Sbjct: 611 LRTACVYGGASISEQIAELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADR 670
Query: 332 MLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANK 391
M DMGF PQI IV + RQT+M++AT+P +V +A +L P+++ G ++++
Sbjct: 671 MFDMGFGPQINCIVDSIRPDRQTIMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSD- 729
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHG 450
I Q +EV + RRL ++L +I++F + ++ D L R L+ Q+ ++HG
Sbjct: 730 -IEQFVEVRPTETRFRRLIELLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHG 788
Query: 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXX 510
K Q++RD ++ F+ +L+AT +A+RGLDIKD+ +VVN+D P +EDYVHR+
Sbjct: 789 SKDQTDRDETISDFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTG 848
Query: 511 XXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDM 551
AYTF + R++S +IK LE + +VP ELR +
Sbjct: 849 RAGNRGTAYTFITPDEERFSSSIIKALEQSGSKVPDELRKL 889
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 703 (252.5 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
Identities = 159/403 (39%), Positives = 238/403 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V VSG + PP ++F+ L + AG++ TP+Q S PI L RD++A A+TG
Sbjct: 274 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 333
Query: 222 SGKTLGYLLPGFIHLKR-----CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276
SGKT +LLP H+ R P ++++PTREL QI EA KF + +
Sbjct: 334 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 393
Query: 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336
+YGG G ++ I +G +I+ ATPGRL DI+ +I L Q+ YLVLDEADRMLDMG
Sbjct: 394 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMG 453
Query: 337 FEPQIRKIVK--EVPAR--RQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVDELAANK 391
F P+++K++ +P++ RQTLM++AT+P E++++AA+ L N + V +G V A +
Sbjct: 454 FGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG--GACR 511
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 450
+ Q + K +L +ILR+ + +VF TKK D +A L ++ +IHG
Sbjct: 512 DVQQADLQVGQYSKREKLLEILRNIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHG 570
Query: 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXX 510
D+ Q ER+ L FR G+ PVLVAT VAARGLDI++++ V+N+D P+ +++YVHRI
Sbjct: 571 DREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTG 630
Query: 511 XXXXXXVAYTFFG-DQDSRYASDLIKLLEGAKQQVPRELRDMA 552
A +FF + D+ A L+K+L A+Q VP L ++A
Sbjct: 631 RCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIA 673
Score = 40 (19.1 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 91 SYGGRDTNAGSKLEAGTRGNQSARGG 116
SYG RD AG E+ R N S GG
Sbjct: 64 SYGKRD--AG---ESNKRENTSTTGG 84
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 683 (245.5 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 157/408 (38%), Positives = 244/408 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V V+G +VPP ++F+ L R V AG+ TP+Q S PI + RD++A A+TG
Sbjct: 262 VDVTGKDVPPAILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTG 321
Query: 222 SGKTLGYLLPGFIHLKR----CRNDPRLG-PTVLVLSPTRELATQIQDEAVKFGKSSRIS 276
SGKT +LLP ++ +L P ++++PTREL QI +A KF + +
Sbjct: 322 SGKTAAFLLPILSYMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYGTCVR 381
Query: 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336
+YGG ++D+++G +I+ ATPGRL DI+ +I L+++ YLVLDEADRMLDMG
Sbjct: 382 PVVVYGGIQPVHAMRDVEKGCNILCATPGRLLDIVSKEKIGLSKLRYLVLDEADRMLDMG 441
Query: 337 FEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNP-VQVNIGNVDELAANK 391
F P+I K++ + +P + RQTLM++AT+P E+R++A++ L + + V +G V ++
Sbjct: 442 FAPEIEKLMTKPGMPTKEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSD- 500
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 450
+ Q + + K +L +IL+S E + ++F +TKK D +A L ++ F + +IHG
Sbjct: 501 -VAQTVLEMRENGKMEKLLEILKSSEK-ERTMIFVNTKKKADFIAGYLCQEKFSSTSIHG 558
Query: 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXX 510
D+ Q +R+ L FR G+ V+V T VAARGLDI++++ V+NYD P V++YVHRI
Sbjct: 559 DREQYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTG 618
Query: 511 XXXXXXVAYTFFGDQDSRY-ASDLIKLLEGAKQQVPRELRDMASRGGG 557
A +FF QD A L+K+L A Q+VP L ++A G G
Sbjct: 619 RCGNTGKATSFFNVQDDHVIARPLVKILTDAHQEVPAWLEEIAFGGHG 666
Score = 59 (25.8 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 21/58 (36%), Positives = 23/58 (39%)
Query: 82 GYSPENEDN--SYGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGGS 137
G S E ED SYG N + G RG + RGG Q VGV G S
Sbjct: 162 GNSGEEEDRPRSYGRGGFNNS---DTGGRGRRGGRGGGSQYGGYKGRNEEVGVESGKS 216
Score = 53 (23.7 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 78 GQRHGYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGGS 137
G+R G+ EN ++ R + G+ E R RGG +N G G+GG
Sbjct: 141 GERGGFRSENGQRNFDNRG-DFGNSGEEEDRPRSYGRGG---FNNSDTGGRGRRGGRGGG 196
Query: 138 S 138
S
Sbjct: 197 S 197
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 701 (251.8 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
Identities = 163/418 (38%), Positives = 249/418 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V VSG P M+F+ G L + V +G+ PTP+Q PI RD++A A+TG
Sbjct: 265 VDVSGSNPPKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTG 324
Query: 222 SGKTLGYLLPGFIHLKRCRNDPRLG--------PTVLVLSPTRELATQIQDEAVKFGKSS 273
SGKT +LLP L+R D P ++++PTREL QI EA KF +
Sbjct: 325 SGKTAAFLLP---ILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGT 381
Query: 274 RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRML 333
+ +YGG G ++++ +G +++ ATPGRL+D++ +I L++V YLVLDEADRML
Sbjct: 382 CVRPVVVYGGINTGYTIREVLKGCNVLCATPGRLHDLIGRGKIGLSKVRYLVLDEADRML 441
Query: 334 DMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLL-VNPVQVNIGNVDELA 388
DMGFEP++RK+V +P++ RQTLM++AT+P +++++AAD L V+ + + +G V
Sbjct: 442 DMGFEPEMRKLVASPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGAC 501
Query: 389 ANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAA 447
++ + Q + + K +L ++LR+ + +VF TK+ D +A L ++ +
Sbjct: 502 SD--VEQTVVQVDQYSKRDQLLELLRATG-NERTMVFVETKRSADFIATFLCQEKISTTS 558
Query: 448 IHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIX 507
IHGD+ Q ER+ L+ FR G PVLVAT VAARGLDI+ ++ VVN+D P+ +++YVHRI
Sbjct: 559 IHGDREQREREKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIG 618
Query: 508 XXXXXXXXXVAYTFFG-DQDSRYASDLIKLLEGAKQQVPRELRDMA-SRGGGMG-RPR 562
A +FF + D+ A L+K+L GA+Q VP+ L ++A S G G PR
Sbjct: 619 RTGRCGNTGRAVSFFNPESDTPLARSLVKVLSGAQQVVPKWLEEVAFSAHGTTGFNPR 676
Score = 40 (19.1 bits), Expect = 2.0e-71, Sum P(2) = 2.0e-71
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 93 GGRDTNAGSKLEAGTRGNQS---ARGG 116
G RD N ++ + G +G +S RGG
Sbjct: 111 GSRDENDENRNDDGWKGGESRGRGRGG 137
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
Identities = 165/414 (39%), Positives = 242/414 (58%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFD-ATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSR 212
+ Y R E TV ++PPP SF+ A G ++ E+ GF P+PIQ+Q WP+ L +
Sbjct: 66 KVYPFREESTV---KIPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQ 122
Query: 213 DIVAIAKTGSGKTLGYLLPGFIHLKRC-----RNDPRLGPT--VLVLSPTRELATQIQDE 265
D + +++TGSGKTL +LLP +H+ +ND P+ VLVLSPTRELA QI+ E
Sbjct: 123 DCIGVSQTGSGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGE 182
Query: 266 AVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLV 325
K+ + S CLYGG + Q++ GV+IV+ATPGRL D+ ISL V+Y+V
Sbjct: 183 VKKYSYNGYKS-VCLYGGGSRPEQVEACRGGVEIVIATPGRLTDLSNDGVISLASVTYVV 241
Query: 326 LDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVD 385
LDEADRMLDMGFE IR+I+ E+ R + +ATWP VRK+ V G++D
Sbjct: 242 LDEADRMLDMGFEVAIRRILFEIRPDRLVALTSATWPEGVRKLTDKYTKEAVMAVNGSLD 301
Query: 386 ELAANKAITQHIEVLAPMDKHRRLEQILR--SQEPGS--KIIVFCSTKKMCDQLARNLTR 441
L + K++TQ E + + R+ +I+ + G K+I+F +K M D L+ +
Sbjct: 302 -LTSCKSVTQFFEFVPHDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCM 360
Query: 442 Q-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVE 500
+ + +HG +SQS+R+ LN R+G +LVATD+A+RG+D+ DI V+NYDFP +E
Sbjct: 361 KGINSQGLHGGRSQSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIE 420
Query: 501 DYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR 554
+YVHR+ A +F D LI++LE ++Q+VP +LR A +
Sbjct: 421 EYVHRVGRTGRAGRKGEAMSFLWWNDRSNFEGLIQILEKSEQEVPDQLRRDAEK 474
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 161/403 (39%), Positives = 242/403 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V VSG + PP ++F+ L + AG++ TP+Q S PI L RD++A A+TG
Sbjct: 261 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 320
Query: 222 SGKTLGYLLPGFIHLKR-----CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276
SGKT +LLP H+ R R P ++++PTREL QI EA KF + +
Sbjct: 321 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 380
Query: 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336
+YGG G ++ I +G +I+ ATPGRL DI+ +I L QV YLVLDEADRMLDMG
Sbjct: 381 AVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMG 440
Query: 337 FEPQIRKIVK--EVPAR--RQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVDELAANK 391
F P+++K++ +P++ RQTL+++AT+P E++++A + L N + V +G V A +
Sbjct: 441 FGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVG--GACR 498
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 450
+ Q I + P+ K R+L +ILR+ + +VF TKK D +A L ++ +IHG
Sbjct: 499 DVQQSILQVGPVFKKRKLVEILRNIGD-ERPMVFVETKKKADFIATFLCQEKISTTSIHG 557
Query: 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXX 510
D+ Q ER+ L FR G+ PVLVAT VAARGLDI++++ V+N++ P+ +++YVHRI
Sbjct: 558 DREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTG 617
Query: 511 XXXXXXVAYTFFG-DQDSRYASDLIKLLEGAKQQVPRELRDMA 552
A +FF + D+ A L+K+L A+Q VP L ++A
Sbjct: 618 RCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIA 660
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 161/403 (39%), Positives = 242/403 (60%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V VSG + PP ++F+ L + AG++ TP+Q S PI L RD++A A+TG
Sbjct: 261 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 320
Query: 222 SGKTLGYLLPGFIHLKR-----CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276
SGKT +LLP H+ R R P ++++PTREL QI EA KF + +
Sbjct: 321 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 380
Query: 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336
+YGG G ++ I +G +I+ ATPGRL DI+ +I L QV YLVLDEADRMLDMG
Sbjct: 381 AVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMG 440
Query: 337 FEPQIRKIVK--EVPAR--RQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVDELAANK 391
F P+++K++ +P++ RQTL+++AT+P E++++A + L N + V +G V A +
Sbjct: 441 FGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVG--GACR 498
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 450
+ Q I + P+ K R+L +ILR+ + +VF TKK D +A L ++ +IHG
Sbjct: 499 DVQQSILQVGPVFKKRKLVEILRNIGD-ERPMVFVETKKKADFIATFLCQEKISTTSIHG 557
Query: 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXX 510
D+ Q ER+ L FR G+ PVLVAT VAARGLDI++++ V+N++ P+ +++YVHRI
Sbjct: 558 DREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGRTG 617
Query: 511 XXXXXXVAYTFFG-DQDSRYASDLIKLLEGAKQQVPRELRDMA 552
A +FF + D+ A L+K+L A+Q VP L ++A
Sbjct: 618 RCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIA 660
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 725 (260.3 bits), Expect = 7.9e-71, P = 7.9e-71
Identities = 159/403 (39%), Positives = 238/403 (59%)
Query: 154 EAYRRRHE-VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSR 212
E YR E + V G P P ++ G + + + GF PTPIQ Q+ P + R
Sbjct: 489 EKYRSDLEGIQVKGKGCPKPIKTWAQCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGR 548
Query: 213 DIVAIAKTGSGKTLGYLLPGFIH-LKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271
D++ IAKTGSGKTL ++LP F H L + + G ++++PTREL QI + KF K
Sbjct: 549 DLIGIAKTGSGKTLAFILPMFRHILDQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSK 608
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMR--RIS-LNQVSYLVLDE 328
S + C+YGG Q+ ++ RG +I+V TPGR+ D+L R++ L +V+Y+VLDE
Sbjct: 609 SLGLRPVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDE 668
Query: 329 ADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELA 388
ADRM DMGFEPQ+ +I+ V RQT+M++AT+PR++ +A +L P++V +G +
Sbjct: 669 ADRMFDMGFEPQVMRIIDNVRPDRQTVMFSATFPRQMEALARRILKKPIEVIVGGRSVVC 728
Query: 389 ANKAITQHIEVLAPMDKHRRLEQILRS-QEPGSKIIVFCSTKKMCDQLARNLTR-QFGAA 446
K + QH+ +L K +L ++L QE GS IIVF ++ D L R+L + +
Sbjct: 729 --KEVEQHVVILNDDAKFFKLLELLGIYQEAGS-IIVFVDKQENADILLRDLMKASYPCM 785
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
++HG Q +RD + F++G+ +L+AT VAARGLD+KD+ +VVNYD P EDYVHR
Sbjct: 786 SLHGGIDQFDRDSTIIDFKSGKVRLLIATSVAARGLDVKDLILVVNYDVPNHYEDYVHRC 845
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELR 549
AYTF + SRYA D+I+ ++ + +P EL+
Sbjct: 846 GRTGRAGKKGSAYTFITPEQSRYAGDIIRAMDLSGTLIPAELQ 888
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 161/403 (39%), Positives = 239/403 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V VSG + PP ++F+ L + AG++ TP+Q S PI L RD++A A+TG
Sbjct: 249 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 308
Query: 222 SGKTLGYLLPGFIHLKR-----CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276
SGKT +LLP H+ R R P ++++PTREL QI EA KF + +
Sbjct: 309 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 368
Query: 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336
+YGG G ++ I +G +I+ ATPGRL DI+ +I L QV YLVLDEADRMLDMG
Sbjct: 369 AVVIYGGTQFGHSVRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMG 428
Query: 337 FEPQIRKIVK--EVPAR--RQTLMYTATWPREVRKIAADLLVNP-VQVNIGNVDELAANK 391
F P+++K++ +P++ RQTL+++AT+P E++++A D L + + V +G V A +
Sbjct: 429 FGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVG--GACR 486
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 450
+ Q I + K +L +ILR+ + +VF TKK D +A L ++ +IHG
Sbjct: 487 DVQQTILQVGQYSKREKLVEILRNIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHG 545
Query: 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXX 510
D+ Q ER+ L FR G+ PVLVAT VAARGLDI++++ V+N+D P+ +++YVHRI
Sbjct: 546 DREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTG 605
Query: 511 XXXXXXVAYTFFG-DQDSRYASDLIKLLEGAKQQVPRELRDMA 552
A +FF D D+ A L+K+L A+Q VP L ++A
Sbjct: 606 RCGNTGRAISFFDTDSDNHLAQPLVKVLSDAQQDVPAWLEEIA 648
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 159/404 (39%), Positives = 241/404 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V VSG + PP ++F+ L + AG++ TP+Q S PI L RD++A A+TG
Sbjct: 277 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 336
Query: 222 SGKTLGYLLPGFIHLKR------CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275
SGKT +LLP H+ C + + P ++++PTREL QI EA KF + +
Sbjct: 337 SGKTAAFLLPILAHMMHDGITASCFKELQ-EPECIIVAPTRELVNQIYLEARKFSFGTCV 395
Query: 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 335
+YGG G ++ I +G +I+ ATPGRL DI+ +I L Q+ YLVLDEADRMLDM
Sbjct: 396 RAVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDM 455
Query: 336 GFEPQIRKIVK--EVPAR--RQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVDELAAN 390
GF P+++K++ +P++ RQTLM++AT+P E++++AA+ L N + V +G V A
Sbjct: 456 GFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG--GAC 513
Query: 391 KAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIH 449
+ + Q + + K +L +ILR+ + +VF TKK D +A L ++ +IH
Sbjct: 514 RDVQQTVLQVGQFSKREKLVEILRNIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIH 572
Query: 450 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXX 509
GD+ Q ER+ L FR G+ PVLVAT VAARGLDI++++ V+N+D P+ +++YVHRI
Sbjct: 573 GDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRT 632
Query: 510 XXXXXXXVAYTFFG-DQDSRYASDLIKLLEGAKQQVPRELRDMA 552
A +FF + D+ A L+K+L A+Q VP L ++A
Sbjct: 633 GRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIA 676
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 160/403 (39%), Positives = 239/403 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V VSG + PP ++F+ L + AG++ TP+Q S PI L RD++A A+TG
Sbjct: 250 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 309
Query: 222 SGKTLGYLLPGFIHLKR-----CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276
SGKT +LLP H+ R R P ++++PTREL QI EA KF + +
Sbjct: 310 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 369
Query: 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336
+YGG G ++ I +G +I+ ATPGRL DI+ +I L QV YLVLDEADRMLDMG
Sbjct: 370 AVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQVKYLVLDEADRMLDMG 429
Query: 337 FEPQIRKIVK--EVPAR--RQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVDELAANK 391
F P+++K++ +P++ RQTL+++AT+P E++++A + L N + V +G V A +
Sbjct: 430 FGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVG--GACR 487
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 450
+ Q I + K +L +ILR+ + +VF TKK D +A L ++ +IHG
Sbjct: 488 DVQQSILQVGQYSKREKLVEILRNIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHG 546
Query: 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXX 510
D+ Q ER+ L FR G+ PVLVAT VAARGLDI++++ V+N+D P+ +++YVHRI
Sbjct: 547 DREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTG 606
Query: 511 XXXXXXVAYTFFG-DQDSRYASDLIKLLEGAKQQVPRELRDMA 552
A +FF + D+ A L+K+L A+Q VP L ++A
Sbjct: 607 RCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIA 649
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 161/403 (39%), Positives = 238/403 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V VSG + PP ++F+ L + AG++ TP+Q S PI L RD++A A+TG
Sbjct: 277 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 336
Query: 222 SGKTLGYLLPGFIHLKR-----CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276
SGKT +LLP H+ R P ++++PTREL QI EA KF + +
Sbjct: 337 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 396
Query: 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336
+YGG G ++ I +G +I+ ATPGRL DI+ +I L QV YLVLDEADRMLDMG
Sbjct: 397 AVVIYGGTQLGYSIRQIVQGCNILCATPGRLMDIIGKEKIGLRQVKYLVLDEADRMLDMG 456
Query: 337 FEPQIRKIVK--EVPAR--RQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVDELAANK 391
F P+++K++ +P++ RQTLM++AT+P E++++A + L N + V +G V A +
Sbjct: 457 FGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVG--GACR 514
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 450
+ Q I + K +L +ILRS + +VF TKK D +A L ++ +IHG
Sbjct: 515 DVQQTILQVGQYSKREKLVEILRSIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHG 573
Query: 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXX 510
D+ Q ER+ L FR G+ PVLVAT VAARGLDI++++ V+N+D P+ +++YVHRI
Sbjct: 574 DREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTG 633
Query: 511 XXXXXXVAYTFFG-DQDSRYASDLIKLLEGAKQQVPRELRDMA 552
A +FF + D+ A L+K+L A+Q VP L ++A
Sbjct: 634 RCGNTGRAISFFDPESDNHLAQPLVKVLSDAQQDVPAWLEEIA 676
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 162/410 (39%), Positives = 241/410 (58%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V VSG + PP ++F+ L + AG++ TP+Q S PI RD++A A+TG
Sbjct: 278 VEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTG 337
Query: 222 SGKTLGYLLPGFIHLKR-----CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276
SGKT +LLP H+ R R P ++++PTREL QI EA KF + +
Sbjct: 338 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 397
Query: 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336
+YGG G ++ I +G +I+ ATPGRL D++ +I L QV YLVLDEADRMLDMG
Sbjct: 398 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMG 457
Query: 337 FEPQIRKIVK--EVPAR--RQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVDELAANK 391
F P+++K++ +P++ RQTLM++AT+P E++++A + L N + V +G V A +
Sbjct: 458 FGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVG--GACR 515
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 450
+ Q I + K +L +ILR+ + +VF TKK D +A L ++ +IHG
Sbjct: 516 DVQQTILQVGQYSKREKLVEILRNIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHG 574
Query: 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXX 510
D+ Q ER+ L FR G+ PVLVAT VAARGLDI++++ V+N+D P+ +++YVHRI
Sbjct: 575 DREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTG 634
Query: 511 XXXXXXVAYTFFG-DQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMG 559
A +FF + DS+ A L+K+L A+Q VP L ++A G G
Sbjct: 635 RCGNTGRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEIAFSTYGPG 684
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 162/410 (39%), Positives = 241/410 (58%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V VSG + PP ++F+ L + AG++ TP+Q S PI RD++A A+TG
Sbjct: 278 VEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTG 337
Query: 222 SGKTLGYLLPGFIHLKR-----CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276
SGKT +LLP H+ R R P ++++PTREL QI EA KF + +
Sbjct: 338 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 397
Query: 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336
+YGG G ++ I +G +I+ ATPGRL D++ +I L QV YLVLDEADRMLDMG
Sbjct: 398 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVIGKEKIGLRQVKYLVLDEADRMLDMG 457
Query: 337 FEPQIRKIVK--EVPAR--RQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVDELAANK 391
F P+++K++ +P++ RQTLM++AT+P E++++A + L N + V +G V A +
Sbjct: 458 FGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVG--GACR 515
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 450
+ Q I + K +L +ILR+ + +VF TKK D +A L ++ +IHG
Sbjct: 516 DVQQTILQVGQYSKREKLVEILRNIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHG 574
Query: 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXX 510
D+ Q ER+ L FR G+ PVLVAT VAARGLDI++++ V+N+D P+ +++YVHRI
Sbjct: 575 DREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTG 634
Query: 511 XXXXXXVAYTFFG-DQDSRYASDLIKLLEGAKQQVPRELRDMASRGGGMG 559
A +FF + DS+ A L+K+L A+Q VP L ++A G G
Sbjct: 635 RCGNTGRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEIAFSTYGPG 684
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 159/403 (39%), Positives = 239/403 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V VSG + PP ++F+ L + AG++ TP+Q S PI L RD++A A+TG
Sbjct: 256 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 315
Query: 222 SGKTLGYLLPGFIHLKR-----CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276
SGKT +LLP H+ R P ++++PTREL QI EA KF + +
Sbjct: 316 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 375
Query: 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336
+YGG G ++ I +G +I+ ATPGRL DI+ +I L Q+ YLVLDEADRMLDMG
Sbjct: 376 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMG 435
Query: 337 FEPQIRKIVK--EVPAR--RQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVDELAANK 391
F P+++K++ +P++ RQTLM++AT+P E++++AA+ L N + V +G V A +
Sbjct: 436 FGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG--GACR 493
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 450
+ Q + + K +L +ILR+ + +VF TKK D +A L ++ +IHG
Sbjct: 494 DVQQTVLQVGQFSKREKLVEILRNIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHG 552
Query: 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXX 510
D+ Q ER+ L FR G+ PVLVAT VAARGLDI++++ V+N+D P+ +++YVHRI
Sbjct: 553 DREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTG 612
Query: 511 XXXXXXVAYTFFG-DQDSRYASDLIKLLEGAKQQVPRELRDMA 552
A +FF + D+ A L+K+L A+Q VP L ++A
Sbjct: 613 RCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIA 655
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 159/403 (39%), Positives = 239/403 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V VSG + PP ++F+ L + AG++ TP+Q S PI L RD++A A+TG
Sbjct: 276 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 335
Query: 222 SGKTLGYLLPGFIHLKR-----CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276
SGKT +LLP H+ R P ++++PTREL QI EA KF + +
Sbjct: 336 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 395
Query: 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336
+YGG G ++ I +G +I+ ATPGRL DI+ +I L Q+ YLVLDEADRMLDMG
Sbjct: 396 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDIIGKEKIGLKQIKYLVLDEADRMLDMG 455
Query: 337 FEPQIRKIVK--EVPAR--RQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVDELAANK 391
F P+++K++ +P++ RQTLM++AT+P E++++AA+ L N + V +G V A +
Sbjct: 456 FGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVG--GACR 513
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 450
+ Q + + K +L +ILR+ + +VF TKK D +A L ++ +IHG
Sbjct: 514 DVQQTVLQVGQFSKREKLVEILRNIGD-ERTMVFVETKKKADFIATFLCQEKISTTSIHG 572
Query: 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXX 510
D+ Q ER+ L FR G+ PVLVAT VAARGLDI++++ V+N+D P+ +++YVHRI
Sbjct: 573 DREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGRTG 632
Query: 511 XXXXXXVAYTFFG-DQDSRYASDLIKLLEGAKQQVPRELRDMA 552
A +FF + D+ A L+K+L A+Q VP L ++A
Sbjct: 633 RCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIA 675
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 543 (196.2 bits), Expect = 4.3e-70, Sum P(2) = 4.3e-70
Identities = 116/283 (40%), Positives = 174/283 (61%)
Query: 155 AYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDI 214
AYR+ E+ V G +VP P + TG ++L + + P PIQAQ+ PI + RD
Sbjct: 377 AYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDC 436
Query: 215 VAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFG 270
+ +AKTGSGKTLG++LP H+K + P + GP LV++PTREL QI + KF
Sbjct: 437 IGVAKTGSGKTLGFVLPMLRHIK---DQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFS 493
Query: 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDIL--EMRRIS-LNQVSYLVLD 327
K+ I C +YGG+ Q+ ++ RG +IVV TPGR+ DIL +I+ L +V+YLV+D
Sbjct: 494 KALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMD 553
Query: 328 EADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDEL 387
EADRM DMGFEPQI +IV+ + RQT++++AT+PR+V +A +L PV++ +G
Sbjct: 554 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEIQVGG--RS 611
Query: 388 AANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKK 430
NK ITQ +E+ ++ RL ++L K++VF +++
Sbjct: 612 VVNKDITQLVEIRPESERFSRLLELLGEWYEKGKVLVFVRSQE 654
Score = 202 (76.2 bits), Expect = 4.3e-70, Sum P(2) = 4.3e-70
Identities = 38/92 (41%), Positives = 60/92 (65%)
Query: 461 LNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYT 520
++ F++ +L+AT VAARGLD+K++ +VVN+D P EDYVHR+ A T
Sbjct: 657 ISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVT 716
Query: 521 FFGDQDSRYASDLIKLLEGAKQQVPRELRDMA 552
F + D++YA DL+K LE ++Q VP +++ +A
Sbjct: 717 FISEDDAKYAPDLVKALELSEQPVPDDVKAVA 748
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 166/408 (40%), Positives = 233/408 (57%)
Query: 157 RRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
R++ +TV+G+++PPP +F FP LLR + + G PTPIQ Q P+ L RD++
Sbjct: 80 RKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIG 139
Query: 217 IAKTGSGKTLGYLLPGFI-HLKRCRNDPRL---GPTVLVLSPTRELATQIQDEAVKFGKS 272
IA TGSGKTL ++LP I L+ P GP LV+ P+RELA Q D +F S
Sbjct: 140 IAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVAS 199
Query: 273 ------SRI-SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLV 325
R+ S C+ GG QL + +GV IVVATPGRL DIL +++SL+ L
Sbjct: 200 LVEDGYPRLRSLLCI-GGVDMRSQLDVVKKGVHIVVATPGRLKDILAKKKMSLDACRLLT 258
Query: 326 LDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVD 385
LDEADR++D+GFE IR + ++RQTL+++AT P +++ A LV PV VN+G
Sbjct: 259 LDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSALVKPVTVNVGRAG 318
Query: 386 ELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFG 444
AAN + Q +E + K L + L+ P +++FC K D + L +
Sbjct: 319 --AANLDVIQEVEYVKQEAKIVYLLECLQKTTP--PVLIFCENKADVDDIHEYLLLKGVE 374
Query: 445 AAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVH 504
A AIHG K Q +RDY ++ F+AG+ VLVATDVA++GLD DI+ V+NYD P +E+YVH
Sbjct: 375 AVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPGEIENYVH 434
Query: 505 RIXXXXXXXXXXVAYTFFGDQDSRYAS-DLIKLLEGAKQQVPRELRDM 551
RI +A TF S DL LL+ AKQ++P L ++
Sbjct: 435 RIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAEL 482
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 682 (245.1 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
Identities = 163/418 (38%), Positives = 241/418 (57%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V VSG +VPP ++F+ L + V +G+ TPIQ S PI + RD++A A+TG
Sbjct: 274 VEVSGSDVPPAILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTG 333
Query: 222 SGKTLGYLLPGFIHL--KRCRNDP--RLG-PTVLVLSPTRELATQIQDEAVKFGKSSRIS 276
SGKT +LLP HL K + L P ++++PTREL QI +A KF + +
Sbjct: 334 SGKTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGTCVR 393
Query: 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336
+YGG LK I G +I+ ATPGRL D++ +I L ++ YLVLDEADRMLDMG
Sbjct: 394 PVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLRYLVLDEADRMLDMG 453
Query: 337 FEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLV-NPVQVNIGNVDELAANK 391
F I ++K +P++ RQTLM++AT+P ++ +A ++L + + V +G V ++
Sbjct: 454 FREDIENLLKSSGMPSKEERQTLMFSATFPSSIQSLAREILKPDYLFVVVGQVGGACSD- 512
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGS-KIIVFCSTKKMCDQLARNLTRQ-FGAAAIH 449
+ Q + + K +L +IL QE GS + +VF TKK D +A L ++ + +IH
Sbjct: 513 -VEQMVIEVDEFGKKDKLMEIL--QEIGSERTMVFVKTKKKADFIATFLCQEKVPSTSIH 569
Query: 450 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXX 509
GD+ Q ER+ L FR G+ PV+VAT VAARGLDI+++ V+N+D P +++YVHRI
Sbjct: 570 GDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGRT 629
Query: 510 XXXXXXXVAYTFF---GDQDSRYASDLIKLLEGAKQQVPRELRDMA--SRGGGMGRPR 562
A +FF GD + R A L+K+L A Q+VP L ++A + G PR
Sbjct: 630 GRCGNTGRAISFFDKRGDDEQRIARSLVKVLSDAHQEVPAWLEEVAFSAHGSSAYNPR 687
Score = 42 (19.8 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 88 EDNSY-GGRDTNAGSKLEAGTRGNQSARGG 116
+DN GG G E RG + RGG
Sbjct: 126 DDNRRRGGFQRRGGFNDETSGRGRRGVRGG 155
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 161/403 (39%), Positives = 241/403 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +SG + P P ++F+ F L + + G+S TP+Q S P+ RD+++ A+TG
Sbjct: 155 VEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTG 214
Query: 222 SGKTLGYLLPGFIHLKR-----CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276
SGKT +LLP + + + P ++++PTREL QI EA KF + I
Sbjct: 215 SGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIR 274
Query: 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336
+YGG G ++ I +G +I+ ATPGRL DI+E +ISL +V YLVLDEADRMLDMG
Sbjct: 275 PVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMG 334
Query: 337 FEPQIRKIVK--EVPA--RRQTLMYTATWPREVRKIAADLL-VNPVQVNIGNVDELAANK 391
F ++K++ E+P+ RRQTLM++AT+P EV+++A + L + + + IGN A
Sbjct: 335 FGLDMKKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNT--CGACS 392
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 450
+ Q+I + + K +L +IL+S G + +VF TKK D LA L ++ + +IHG
Sbjct: 393 DVQQNILQVPRLSKRDKLIEILQSTG-GERTMVFVDTKKKADYLAAFLCQENLPSTSIHG 451
Query: 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXX 510
D+ Q ER+ L FR+G+ +LVAT VA+RGLDI++++ V+N+D P +EDYVHRI
Sbjct: 452 DREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTG 511
Query: 511 XXXXXXVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPRELRDMA 552
A +FF DQ D L+K+L A+Q+VP L +MA
Sbjct: 512 RCGNTGKAVSFFDDQSDGHLVQSLLKVLSEAQQEVPVWLEEMA 554
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 674 (242.3 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 161/423 (38%), Positives = 245/423 (57%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V VSG +P M+F+ L + +G+ PTP+Q PI RD++A A+TG
Sbjct: 169 VDVSGTNLPAAIMTFEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQTG 228
Query: 222 SGKTLGYLLPGFIHLKR-----CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276
SGKT +LLP L R P ++++PTREL QI EA KF + +
Sbjct: 229 SGKTAAFLLPILQQLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEARKFSFGTCVR 288
Query: 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336
+YGG G Q+++I++G +++ TPGRL D++ ++ L++V +LVLDEADRMLDMG
Sbjct: 289 PVVVYGGVNTGYQMREIEKGCNVLCGTPGRLLDMIGRGKVGLSKVRHLVLDEADRMLDMG 348
Query: 337 FEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLL-VNPVQVNIGNVDELAANK 391
FEP +R++V +P++ RQTLM++AT+P +++++AAD L V+ + V +G V +
Sbjct: 349 FEPDMRRLVGSPGMPSKEERQTLMFSATFPEDIQRLAADFLKVDYLFVAVGVVGGACTD- 407
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGS-KIIVFCSTKKMCDQLARNLTRQ-FGAAAIH 449
+ Q + +K +L +LR+ GS + +VF TK+ D +A L ++ +IH
Sbjct: 408 -VEQTFLQVTKFNKREQLLDLLRTI--GSERTMVFVETKRQADFIAAFLCQEKVPTTSIH 464
Query: 450 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXX 509
GD+ Q ER+ L FR+G+ PVLVAT VA+RGLDI D++ VVN+D P ++DYVHRI
Sbjct: 465 GDREQREREKALADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGRT 524
Query: 510 XXXXXXXVAYTFFG-DQDSRYASDLIKLLEGAKQQVPRELRDMA--SRGGGMGRP--RRW 564
A +F+ D DS+ A L+ +L A+Q+VP L + A + G P R +
Sbjct: 525 GRCGNTGRAVSFYDPDVDSQLARSLVGILAKAQQEVPSWLEESAFGAHGSAAFNPSGRTF 584
Query: 565 APT 567
A T
Sbjct: 585 AST 587
Score = 44 (20.5 bits), Expect = 5.3e-69, Sum P(2) = 5.3e-69
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 78 GQRHGYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARGG 116
G+ G S ++E N GG N G RG + GG
Sbjct: 62 GRGFGRSDQDELNGGGGDSENGFRGRGRGGRGGFRSGGG 100
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 161/408 (39%), Positives = 232/408 (56%)
Query: 157 RRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
R++ + V+GD++PPP +F FP +L + G PTPIQ Q P+ L RD++
Sbjct: 129 RKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIG 188
Query: 217 IAKTGSGKTLGYLLPGF-IHLKRCRNDPRL---GPTVLVLSPTRELATQIQDEAVKF--- 269
IA TGSGKTL ++LP I L+ P GP L++ P+RELA Q + +F
Sbjct: 189 IAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAP 248
Query: 270 ----GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLV 325
G S C+ GG QL+ + RGV IVVATPGRL D+L +++SL+ YL
Sbjct: 249 LVEAGYPPLRSLLCI-GGIDMRSQLEVVKRGVHIVVATPGRLKDMLAKKKMSLDACRYLT 307
Query: 326 LDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVD 385
LDEADR++D+GFE IR++ ++RQTL+++AT P +++ A LV PV VN+G
Sbjct: 308 LDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSALVKPVTVNVGRAG 367
Query: 386 ELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFG 444
AAN + Q +E + K L + L+ P +++FC K D + L +
Sbjct: 368 --AANLDVIQEVEYVKQEAKIVYLLECLQKTSP--PVLIFCENKADVDDIHEYLLLKGVE 423
Query: 445 AAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVH 504
A AIHG K Q +R+Y ++ F+AG+ VLVATDVA++GLD DI+ V+NYD P +E+YVH
Sbjct: 424 AVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVINYDMPAEIENYVH 483
Query: 505 RIXXXXXXXXXXVAYTFFG-DQDSRYASDLIKLLEGAKQQVPRELRDM 551
RI +A TF +Q DL LL+ AKQ++P L ++
Sbjct: 484 RIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 531
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 160/413 (38%), Positives = 234/413 (56%)
Query: 154 EAYRRRHE-VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSR 212
+AYR + +TV G + P P ++ G +++ + +S PT IQAQ+ P + R
Sbjct: 283 KAYREELDSITVKGIDCPKPIKTWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGR 342
Query: 213 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVK 268
D++ IAKTGSGKTL +LLP F H+ + P L GP ++L+PTRELA Q EA K
Sbjct: 343 DVIGIAKTGSGKTLAFLLPMFRHIL---DQPELEEGDGPIAVILAPTRELAMQTYKEANK 399
Query: 269 FGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR---ISLNQVSYLV 325
F K + C YGG Q+ D+ RG +IVV TPGR+ D+L +L +V+YLV
Sbjct: 400 FAKPLGLKVACTYGGVGISEQIADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLV 459
Query: 326 LDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVD 385
LDEADRM D GFEPQI K+V + +QT++++AT+PR + +A +L PV++ +G
Sbjct: 460 LDEADRMFDKGFEPQIMKVVNNIRPDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKS 519
Query: 386 ELAANKAITQHIEVLAPMDKHRRLEQILRSQ-EPGSKIIVFCSTKKMCDQLARNLTRQ-F 443
+ ++ ITQ+ + A K +L ++L E GS I VF ++ D + L R +
Sbjct: 520 VVCSD--ITQNAVICAEHQKFLKLLELLGMYYEEGSSI-VFVDKQEKADDIVDQLMRTGY 576
Query: 444 GAAA-IHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ A +HG Q +RD + F+ G VLVAT VAARGLD+K++ +VVNYD P EDY
Sbjct: 577 NSVAPLHGGIDQHDRDSSIADFKTGVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDY 636
Query: 503 VHRIXXXXXXXXXXVAYTF-FGDQDSRYASDLIKLLEGAKQQVPRELRDMASR 554
VHR+ AYTF + + A ++ + E A + P +L+ M R
Sbjct: 637 VHRVGRTGRAGRKGYAYTFVLPEHQEKMAGEICRAFETAGCKPPADLKAMFER 689
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 690 (248.0 bits), Expect = 5.6e-68, P = 5.6e-68
Identities = 156/399 (39%), Positives = 229/399 (57%)
Query: 164 VSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSG 223
V G + P P SF F L+ + + + PTPIQA + P AL RD++ IAKTGSG
Sbjct: 255 VGGLKPPRPVCSFAHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSG 314
Query: 224 KTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTC 279
KT YL P +H+ + P L GP +++ PTRELA Q+ EA KF K I+ C
Sbjct: 315 KTAAYLWPAIVHIM---DQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPIC 371
Query: 280 LYGGAPKGPQLKDI-DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFE 338
YGG K Q ++ + G ++VV TPGR+ D+++M + + ++LV DEADRM DMGFE
Sbjct: 372 AYGGGSKWEQSNELQNEGAEMVVCTPGRIIDLVKMGATNFLRTTFLVFDEADRMFDMGFE 431
Query: 339 PQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIE 398
Q++ I V RQ LM++AT+ ++V ++A D LV+PV++ G V E AN I Q +
Sbjct: 432 AQVKSISDHVRPDRQCLMFSATFKQKVERLARDALVDPVRIVQGEVGE--ANADIEQKVF 489
Query: 399 VLAPMDK--HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQS 455
V+ D H + ++ G K+++F + K + +A+ L + F +HGD Q+
Sbjct: 490 VMQNQDVKLHWLIRNLVEFASLG-KVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQA 548
Query: 456 ERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXX 515
ER+ L +FR +S +LVATDVAARGLDI +IR V+N+D ++ +VHRI
Sbjct: 549 ERNENLLKFRK-KSQILVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHK 607
Query: 516 XVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR 554
AYT ++D L+K LE Q+VP+ L D+A +
Sbjct: 608 GTAYTLVTEKDIEMVGHLVKNLESVSQEVPKPLMDLAMK 646
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 150/414 (36%), Positives = 245/414 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNA-GFSSPTPIQAQSWPIALQSRDIVAIAKT 220
+ V G +VP P + + P L +H+ F P+ IQ+Q+ P L RD++ IAKT
Sbjct: 281 IKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKT 340
Query: 221 GSGKTLGYLLPGFIHLKRCR-NDPRLGPTVLVLSPTRELATQIQDEAVKFGK-SSRISCT 278
GSGKTL Y+LP H++ + + GP L+LSPTRELA QI+ E + F K ++ +
Sbjct: 341 GSGKTLSYVLPMLRHIQDQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVC 400
Query: 279 CLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM---RRISLNQVSYLVLDEADRMLDM 335
C YGG+ Q+ ++ +GV+I+V TPGR+ D+L R ++L + +++VLDEADRM D+
Sbjct: 401 CCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDL 460
Query: 336 GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ 395
GFEPQ+ KI+ ++ RQT++++AT+PR++ +A +L +PV + +G + +A I Q
Sbjct: 461 GFEPQVNKILTQIRPDRQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPE--IKQ 518
Query: 396 HI---EVLAP-MDKHR-----RLEQILRS---QEPGSKIIVFCSTKKMCDQLARNL-TRQ 442
+ E A DK++ +L IL + + P SKI+VF + D+L NL + +
Sbjct: 519 EVVLFETSAEEQDKYKQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNK 578
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPV--LVATDVAARGLDIKDIRVVVNYDFPTGVE 500
+ A AIHG K Q +R Y + +F + S + L+AT +AARGLD++++ +V+N+D P +E
Sbjct: 579 YPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHME 638
Query: 501 DYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR 554
DYVHR+ A TF + +L+K L+ + + +L ++A++
Sbjct: 639 DYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNLVKALKLSHSDIDPKLEEIANK 692
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 152/378 (40%), Positives = 225/378 (59%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
MSFD+ G P++LR V G+ PTPIQ Q+ P L+ RD++A A+TG+GKT G+ LP
Sbjct: 1 MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
Query: 234 IHL--KRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 291
HL ++ R L+L+PTRELA QI + + K I ++GG PQ+
Sbjct: 61 QHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120
Query: 292 DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPAR 351
+ GVD++VATPGRL D+ + L+QV LVLDEADRMLDMGF IR+++ ++PA+
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAK 180
Query: 352 RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ 411
RQ L+++AT+ +++ +A LL NP+++ + + A+ +TQH+ + DK R+ E
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN--TASDQVTQHVHFV---DKKRKREL 235
Query: 412 ILRSQEPGS--KIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGR 468
+ G+ +++VF TK + LA L + +AAIHG+KSQ R L F++G
Sbjct: 236 LSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGD 295
Query: 469 SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSR 528
VLVATD+AARGLDI+++ VVNY+ P EDYVHRI A + + +
Sbjct: 296 IRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHK 355
Query: 529 YASDLIKLLEGAKQQVPR 546
D+ KLL K+++PR
Sbjct: 356 LLRDIEKLL---KKEIPR 370
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 150/414 (36%), Positives = 245/414 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNA-GFSSPTPIQAQSWPIALQSRDIVAIAKT 220
+ V G +VP P + + P L +H+ F P+ IQ+Q+ P L RD++ IAKT
Sbjct: 281 IKVKGTDVPRPILKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKT 340
Query: 221 GSGKTLGYLLPGFIHLKRCR-NDPRLGPTVLVLSPTRELATQIQDEAVKFGK-SSRISCT 278
GSGKTL Y+LP H++ + + GP L+LSPTRELA QI+ E + F K ++ +
Sbjct: 341 GSGKTLSYVLPMLRHIQDQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVC 400
Query: 279 CLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEM---RRISLNQVSYLVLDEADRMLDM 335
C YGG+ Q+ ++ +GV+I+V TPGR+ D+L R ++L + +++VLDEADRM D+
Sbjct: 401 CCYGGSSIENQINELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDL 460
Query: 336 GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ 395
GFEPQ+ KI+ ++ RQT++++AT+PR++ +A +L +PV + +G + +A I Q
Sbjct: 461 GFEPQVNKILTQIRPDRQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPE--IKQ 518
Query: 396 HI---EVLAP-MDKHR-----RLEQILRS---QEPGSKIIVFCSTKKMCDQLARNL-TRQ 442
+ E A DK++ +L IL + + P SKI+VF + D+L NL + +
Sbjct: 519 EVVLFETSAEEQDKYKQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNK 578
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPV--LVATDVAARGLDIKDIRVVVNYDFPTGVE 500
+ A AIHG K Q +R Y + +F + S + L+AT +AARGLD++++ +V+N+D P +E
Sbjct: 579 YPAIAIHGGKDQMDRKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHME 638
Query: 501 DYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR 554
DYVHR+ A TF + +L+K L+ + + +L ++A++
Sbjct: 639 DYVHRVGRTGRAGAKGNAITFVSSSQPKEVFNLVKALKLSHSDIDPKLEEIANK 692
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 398 (145.2 bits), Expect = 2.9e-67, Sum P(2) = 2.9e-67
Identities = 79/195 (40%), Positives = 120/195 (61%)
Query: 160 HEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAK 219
+ +++ GD++P P +++ G P E+L+ + + P+ IQ + P+ LQ +D++ IA+
Sbjct: 235 YNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAE 294
Query: 220 TGSGKTLGYLLPGFIHLKRC----RNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRI 275
TGSGKT +++P I + + ++ LGP +VL+PTRELA QIQ E KF +
Sbjct: 295 TGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGF 354
Query: 276 SCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM 335
C + GG Q + +G IVVATPGRL D LE R L+Q +Y+V+DEADRMLDM
Sbjct: 355 RCVSVVGGHAFEEQSFQMSQGAHIVVATPGRLLDCLERRLFVLSQCTYVVMDEADRMLDM 414
Query: 336 GFEPQIRKIVKEVPA 350
GFE + KI+ +P+
Sbjct: 415 GFEDDVNKILSSLPS 429
Score = 344 (126.2 bits), Expect = 2.9e-67, Sum P(2) = 2.9e-67
Identities = 75/204 (36%), Positives = 118/204 (57%)
Query: 350 ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKH-RR 408
+RRQT+M++AT P V +A L+ PV + IGN+ + A ++ + Q +E+++ K RR
Sbjct: 448 SRRQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQ-AVDR-VEQRVEMISDDSKKWRR 505
Query: 409 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAG 467
+E+IL S II+F + K+ + +A+ L + A +HG KSQ +R+ + Q R
Sbjct: 506 VEEILESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNK 565
Query: 468 RSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDS 527
+ +LVATD+A RG+DI ++ +V+NY+ +EDY HRI A TF G +D+
Sbjct: 566 TADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDT 625
Query: 528 RYASDLIKLLE-GAKQQVPRELRD 550
DL LL AK +P ELR+
Sbjct: 626 DVYYDLRVLLSRSAKAHIPDELRN 649
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 149/369 (40%), Positives = 225/369 (60%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
MSF A G L + V G+ +P+PIQAQ+ P L +D++A A+TG+GKT G+ LP
Sbjct: 1 MSFSALGLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLP-L 59
Query: 234 IHLKRCRNDPRLGPT-VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKD 292
+ L + + G T LVL+PTRELA Q+ + +GK + ++GG P PQ+
Sbjct: 60 LELLAKGHKAKSGQTRALVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINK 119
Query: 293 IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARR 352
+ GVD++VATPGRL D+++ + NQ+ LVLDEADRMLDMGF I+KI+ +PA+R
Sbjct: 120 LRHGVDVLVATPGRLLDLVQQNAVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKR 179
Query: 353 QTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRR---L 409
Q LM++AT+ E+R++A L+ +PV++++ N A T + + P+DK ++ L
Sbjct: 180 QNLMFSATFSDEIRELAKGLVNHPVEISV-----TPRNAAATTVKQWICPVDKTQKSALL 234
Query: 410 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGR 468
Q+++ QE +++VF TK ++LA++L + + AAAIHG+KSQ R L F++G
Sbjct: 235 IQLIK-QENWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGE 293
Query: 469 SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSR 528
VLVATD+AARGLDI + VVN+D P EDYVHRI A + ++ +
Sbjct: 294 VRVLVATDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIK 353
Query: 529 YASDLIKLL 537
D+ +L+
Sbjct: 354 LLKDIERLI 362
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 392 (143.0 bits), Expect = 3.2e-67, Sum P(2) = 3.2e-67
Identities = 83/204 (40%), Positives = 119/204 (58%)
Query: 156 YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
++ + G VP P S+D +G P LL V G+ PTPIQ + PIA+QSRD++
Sbjct: 328 FKEDFNIATKGGSVPNPMRSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLI 387
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRC-RNDP---RL--GPTVLVLSPTRELATQIQDEAVKF 269
+A TGSGKT +LLP ++ R D R GP +VL+PTRELA QI+ EA KF
Sbjct: 388 GVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKF 447
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
+ + + GG Q + G +I++ATPGRL D +E R + L+Q Y+++DEA
Sbjct: 448 TEPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVDCIERRMLVLSQCCYVIMDEA 507
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQ 353
DRM+D+GFE + KI+ +P +
Sbjct: 508 DRMIDLGFEEPVNKILDALPVTNE 531
Score = 357 (130.7 bits), Expect = 3.2e-67, Sum P(2) = 3.2e-67
Identities = 80/201 (39%), Positives = 117/201 (58%)
Query: 352 RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR-RLE 410
RQT+MYTAT P V +IA L P V IG+ E A + Q +E++A DK + RL
Sbjct: 555 RQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGE--AVDTVEQRVEMIAGEDKRKKRLG 612
Query: 411 QILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRS 469
+IL S + IIVF + K+ CD +AR + + F + +HG K+Q +R+ L R G +
Sbjct: 613 EILSSGDFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQEQREAALASVRNGST 672
Query: 470 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRY 529
VLVATD+A RG+D+ D+ +V+N++ T +E Y HRI VA TF G++D+
Sbjct: 673 DVLVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTGRAGKSGVAITFLGNEDADV 732
Query: 530 ASDLIKLL-EGAKQQVPRELR 549
DL ++L + +VP ELR
Sbjct: 733 MYDLKQMLIKSPISRVPEELR 753
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 657 (236.3 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 152/409 (37%), Positives = 226/409 (55%)
Query: 157 RRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
R + + G+++PPP +F P ++ + G P+PIQ Q P+ L RD++
Sbjct: 205 RDQLNIITDGEDIPPPITTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIG 264
Query: 217 IAKTGSGKTLGYLLPGFIHL--KRCRNDPRL---GPTVLVLSPTRELATQIQDEAVKF-- 269
IA TGSGKTL + LP + + C+ P + GP L+L P+RELA Q D F
Sbjct: 265 IAYTGSGKTLVFTLPMVLFALEEECKL-PIIQGEGPFGLILCPSRELARQTYDLVNSFTN 323
Query: 270 -----GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYL 324
G ++ GG Q +GV +++ATPGRL D+L ++I+ YL
Sbjct: 324 ALHKNGGHPQLRTLLAIGGIDLREQEHIFKKGVHMIIATPGRLLDLLNKKKINFKLCKYL 383
Query: 325 VLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNV 384
LDEADR++D+GFE IR ++ +RQTL+++AT P+++++ A LV PV+VN+G
Sbjct: 384 GLDEADRLIDLGFEDDIRSVLDNFTNQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRA 443
Query: 385 DELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQF 443
AAN +TQ +E + P K L + L+ P +++FC KK D + L +Q
Sbjct: 444 G--AANLNVTQEVEFVKPEAKIVYLLECLQKTPP--PVLIFCENKKDVDDIYEYLLLKQV 499
Query: 444 GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYV 503
A +IHGDKSQ ER+ + FR G+ VLVATDVA++GLD +I+ V+N+D P +E+Y+
Sbjct: 500 EAVSIHGDKSQDERESAIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYI 559
Query: 504 HRIXXXXXXXXXXVAYTFFGDQDSR-YASDLIKLLEGAKQQVPRELRDM 551
HRI VA TF ++ DL LL AKQ+VP L ++
Sbjct: 560 HRIGRTGRRGNKGVATTFINKNNTESLLLDLKYLLIEAKQKVPPALLEI 608
Score = 42 (19.8 bits), Expect = 5.4e-67, Sum P(2) = 5.4e-67
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 79 QRHGYSPENEDNSYGGRDTN 98
Q+H ENE N+ +TN
Sbjct: 42 QQHSQQQENEQNNATATNTN 61
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 155/385 (40%), Positives = 233/385 (60%)
Query: 173 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPG 232
FMSF+ G ELLR + G+ PTP+Q Q+ P+ LQ+RD++ A+TG+GKT G+ LP
Sbjct: 9 FMSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPL 68
Query: 233 F--IHLKRCRNDPRLGPTV--LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGP 288
+ + R P + L+L+PTRELA Q+ + +GK + T ++GG P
Sbjct: 69 LQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKP 128
Query: 289 QLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV 348
Q+ + RGVDI+VATPGRL D++ ++L++V + VLDEADRMLDMGF P IR+I+K +
Sbjct: 129 QINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLL 188
Query: 349 PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRR 408
P RQ L+++AT+ +E++++ LL +P + + + AA IT H V+ P+D+ R+
Sbjct: 189 PESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAAR--IT-H--VVHPVDRQRK 243
Query: 409 LEQILRSQEPGSK----IIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQ 463
E L S GSK ++VF TK ++L++ L +AAIHG+KSQ+ R L Q
Sbjct: 244 RE--LLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQ 301
Query: 464 FRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFG 523
F+ G+ VLVATDVAARGLDI + V+N++ P +DYVHR+ VA +
Sbjct: 302 FKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVS 361
Query: 524 DQDSRYASDLIKLLEGAKQQVPREL 548
+ R D+ KLL+ ++P+E+
Sbjct: 362 GDEVRLLRDIEKLLQS---KMPQEV 383
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 155/385 (40%), Positives = 233/385 (60%)
Query: 173 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPG 232
FMSF+ G ELLR + G+ PTP+Q Q+ P+ LQ+RD++ A+TG+GKT G+ LP
Sbjct: 9 FMSFEVLGLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPL 68
Query: 233 F--IHLKRCRNDPRLGPTV--LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGP 288
+ + R P + L+L+PTRELA Q+ + +GK + T ++GG P
Sbjct: 69 LQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKP 128
Query: 289 QLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV 348
Q+ + RGVDI+VATPGRL D++ ++L++V + VLDEADRMLDMGF P IR+I+K +
Sbjct: 129 QINHLRRGVDILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLL 188
Query: 349 PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRR 408
P RQ L+++AT+ +E++++ LL +P + + + AA IT H V+ P+D+ R+
Sbjct: 189 PESRQNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAAR--IT-H--VVHPVDRQRK 243
Query: 409 LEQILRSQEPGSK----IIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQ 463
E L S GSK ++VF TK ++L++ L +AAIHG+KSQ+ R L Q
Sbjct: 244 RE--LLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQ 301
Query: 464 FRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFG 523
F+ G+ VLVATDVAARGLDI + V+N++ P +DYVHR+ VA +
Sbjct: 302 FKQGKIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVS 361
Query: 524 DQDSRYASDLIKLLEGAKQQVPREL 548
+ R D+ KLL+ ++P+E+
Sbjct: 362 GDEVRLLRDIEKLLQS---KMPQEV 383
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 156/398 (39%), Positives = 232/398 (58%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V VSG + PP ++F+ T L ++ AG++ TP+Q PI L RD++A A+TG
Sbjct: 254 VEVSGHDAPPAILTFEETDLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLMACAQTG 313
Query: 222 SGKTLGYLLPGFIHLKR-----CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276
SGKT +LLP H+ R R + P ++++PTREL QI EA KF + +
Sbjct: 314 SGKTAAFLLPILAHMMRDGVTASRFKDQQEPECIIVAPTRELINQIFLEARKFSFGTCVR 373
Query: 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336
+YGG G ++ I +G +I+ ATPGRL DI+ +I L Q+ YLVLDEADRMLDMG
Sbjct: 374 PVVIYGGTQLGHSIRQIMQGCNILCATPGRLMDIIGKEKIGLGQIRYLVLDEADRMLDMG 433
Query: 337 FEPQIRKIVK--EVPAR--RQTLMYTATWPR-EVRKIAADLLVNPV--QVNIGNVDELAA 389
F P+++K++ +P++ RQTLM++AT+PR + A + L N V +G V +
Sbjct: 434 FGPEMKKLISFPGMPSKEQRQTLMFSATFPRGNFKDWAGEFLKNLTICLVAVGQVGGACS 493
Query: 390 NKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAI 448
+ + Q + + K +L +ILR+ + +VF TKK D +A L ++ +I
Sbjct: 494 D--VQQTVLQVGQYSKREKLVEILRNIGE-ERTMVFVETKKKADFIATFLCQEKISTTSI 550
Query: 449 HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXX 508
HGD+ Q ER+ L FR G+ PVLVAT VAARGLDI++++ V+N+D P+ +++YVHRI
Sbjct: 551 HGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR 610
Query: 509 XXXXXXXXVAYTFFGDQ-DSRYASDLIKLLEGAKQQVP 545
A +FF + DS A L+K+L A+Q P
Sbjct: 611 TGRCGNTGKAISFFDPEPDSHLAQPLVKVLSDAQQGCP 648
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 163/412 (39%), Positives = 234/412 (56%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNA-GFSSPTPIQAQSWPIALQSR 212
E R+R ++ GD +PPP SF FP LL + G +PT IQ Q P+AL R
Sbjct: 169 EIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTAIQIQGIPVALSGR 228
Query: 213 DIVAIAKTGSGKTLGYLLPGFIH-LKRCRNDPRL---GPTVLVLSPTRELATQIQDEAVK 268
D++ IA TGSGKT+ ++LP + L++ P + GP L++ P+RELA QI D ++
Sbjct: 229 DMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELARQIFDLIIE 288
Query: 269 F----GKSS--RISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVS 322
GK+ + GG P G Q KD+ G+ IVVATPGRL+D+L + I+L
Sbjct: 289 MFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHIVVATPGRLSDMLTKKIINLEVCR 348
Query: 323 YLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIG 382
YLVLDEADRMLDMGFE +I+ I A+RQTL+++AT PR+++ A LV P+ VN+G
Sbjct: 349 YLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFSATMPRKIQFFAKSALVKPIVVNVG 408
Query: 383 NVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNL-TR 441
AA+ + Q +E + +K R+ + L+ P K+++F K D + L +
Sbjct: 409 RAG--AASLNVLQELEFVRSENKLVRVLECLQKTSP--KVLIFAEKKVDVDNIYEYLLVK 464
Query: 442 QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVED 501
A+IHG K QS+R + FR VLVATDVA++GLD + I V+N+D P +E+
Sbjct: 465 GVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGLDFQGIEHVINFDMPEDIEN 524
Query: 502 YVHRIXXXXXXXXXXVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPRELRDMA 552
YVHRI +A TF + + SDL +LL A Q++P L+ +A
Sbjct: 525 YVHRIGRTGRSGRKGLATTFINKKSEMSVLSDLKQLLAEAGQELPEFLKMLA 576
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 155/391 (39%), Positives = 232/391 (59%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +SG + P P ++F+ F L + + G+S TP+Q S P+ RD+++ A+TG
Sbjct: 155 VEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTG 214
Query: 222 SGKTLGYLLPGFIHLKR-----CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRIS 276
SGKT +LLP + + + P ++++PTREL QI EA KF + I
Sbjct: 215 SGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIR 274
Query: 277 CTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG 336
+YGG G ++ I +G +I+ ATPGRL DI+E +ISL +V YLVLDEADRMLDMG
Sbjct: 275 PVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDIIEKGKISLVEVKYLVLDEADRMLDMG 334
Query: 337 FEPQIRKIVK--EVPA--RRQTLMYTATWPREVRKIAADLL-VNPVQVNIGNVDELAANK 391
F ++K++ E+P+ RRQTLM++AT+P EV+++A + L + + + IGN A
Sbjct: 335 FGLDMKKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNT--CGACS 392
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 450
+ Q+I + + K +L +IL+S G + +VF TKK D LA L ++ + +IHG
Sbjct: 393 DVQQNILQVPRLSKRDKLIEILQSTG-GERTMVFVDTKKKADYLAAFLCQENLPSTSIHG 451
Query: 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXX 510
D+ Q ER+ L FR+G+ +LVAT VA+RGLDI++++ V+N+D P +EDYVHRI
Sbjct: 452 DREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRTG 511
Query: 511 XXXXXXVAYTFFGDQ-DSRYASDLIKLLEGA 540
A +FF DQ D L+K+L A
Sbjct: 512 RCGNTGKAVSFFDDQSDGHLVQSLLKVLSEA 542
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 159/408 (38%), Positives = 218/408 (53%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E R+++ + V GD +PPP SF FP +LR + G PTPIQ Q P L RD
Sbjct: 161 ERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRD 220
Query: 214 IVAIAKTGSGKTLGYLLPGFIHL----KRCRNDPRLGPTVLVLSPTRELATQIQD----- 264
++ IA TGSGKTL + LP + KR R GP L++ P+RELA Q
Sbjct: 221 MIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYY 280
Query: 265 -EAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSY 323
++ S + C GG Q++ I GV ++VATPGRL D+L+ + +SL+ Y
Sbjct: 281 CRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRY 340
Query: 324 LVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
L LDEADRM+DMGFE IR I +RQTL+++AT P++++ A LV PV +N+G
Sbjct: 341 LALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGR 400
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQ 442
AA+ + Q +E + K L + L+ P +++F K D + L +
Sbjct: 401 AG--AASLDVIQEVEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKADVDAIHEYLLLKG 456
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
A AIHG K Q ER + FR G+ VLVATDVA++GLD I+ V+NYD P +E+Y
Sbjct: 457 VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENY 516
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPRELR 549
VHRI +A TF D DL LL AKQ+VP L+
Sbjct: 517 VHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQ 564
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 159/408 (38%), Positives = 218/408 (53%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E R+++ + V GD +PPP SF FP +LR + G PTPIQ Q P L RD
Sbjct: 161 ERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRD 220
Query: 214 IVAIAKTGSGKTLGYLLPGFIHL----KRCRNDPRLGPTVLVLSPTRELATQIQD----- 264
++ IA TGSGKTL + LP + KR R GP L++ P+RELA Q
Sbjct: 221 MIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYY 280
Query: 265 -EAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSY 323
++ S + C GG Q++ I GV ++VATPGRL D+L+ + +SL+ Y
Sbjct: 281 CRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRY 340
Query: 324 LVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
L LDEADRM+DMGFE IR I +RQTL+++AT P++++ A LV PV +N+G
Sbjct: 341 LALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGR 400
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQ 442
AA+ + Q +E + K L + L+ P +++F K D + L +
Sbjct: 401 AG--AASLDVIQEVEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKADVDAIHEYLLLKG 456
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
A AIHG K Q ER + FR G+ VLVATDVA++GLD I+ V+NYD P +E+Y
Sbjct: 457 VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENY 516
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPRELR 549
VHRI +A TF D DL LL AKQ+VP L+
Sbjct: 517 VHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQ 564
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 159/408 (38%), Positives = 218/408 (53%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E R+++ + V GD +PPP SF FP +LR + G PTPIQ Q P L RD
Sbjct: 188 ERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRD 247
Query: 214 IVAIAKTGSGKTLGYLLPGFIHL----KRCRNDPRLGPTVLVLSPTRELATQIQD----- 264
++ IA TGSGKTL + LP + KR R GP L++ P+RELA Q
Sbjct: 248 MIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYY 307
Query: 265 -EAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSY 323
++ S + C GG Q++ I GV ++VATPGRL D+L+ + +SL+ Y
Sbjct: 308 CRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRY 367
Query: 324 LVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
L LDEADRM+DMGFE IR I +RQTL+++AT P++++ A LV PV +N+G
Sbjct: 368 LALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGR 427
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQ 442
AA+ + Q +E + K L + L+ P +++F K D + L +
Sbjct: 428 AG--AASLDVIQEVEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKADVDAIHEYLLLKG 483
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
A AIHG K Q ER + FR G+ VLVATDVA++GLD I+ V+NYD P +E+Y
Sbjct: 484 VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENY 543
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPRELR 549
VHRI +A TF D DL LL AKQ+VP L+
Sbjct: 544 VHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQ 591
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 159/408 (38%), Positives = 218/408 (53%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E R+++ + V GD +PPP SF FP +LR + G PTPIQ Q P L RD
Sbjct: 179 ERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRD 238
Query: 214 IVAIAKTGSGKTLGYLLPGFIHL----KRCRNDPRLGPTVLVLSPTRELATQIQD----- 264
++ IA TGSGKTL + LP + KR R GP L++ P+RELA Q
Sbjct: 239 MIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYY 298
Query: 265 -EAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSY 323
++ S + C GG Q++ I GV ++VATPGRL D+L+ + +SL+ Y
Sbjct: 299 CRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRY 358
Query: 324 LVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
L LDEADRM+DMGFE IR I +RQTL+++AT P++++ A LV PV +N+G
Sbjct: 359 LALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGR 418
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQ 442
AA+ + Q +E + K L + L+ P +++F K D + L +
Sbjct: 419 AG--AASLDVIQEVEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKADVDAIHEYLLLKG 474
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
A AIHG K Q ER + FR G+ VLVATDVA++GLD I+ V+NYD P +E+Y
Sbjct: 475 VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENY 534
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPRELR 549
VHRI +A TF D DL LL AKQ+VP L+
Sbjct: 535 VHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQ 582
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 159/408 (38%), Positives = 218/408 (53%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E R+++ + V GD +PPP SF FP +LR + G PTPIQ Q P L RD
Sbjct: 161 ERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRD 220
Query: 214 IVAIAKTGSGKTLGYLLPGFIHL----KRCRNDPRLGPTVLVLSPTRELATQIQD----- 264
++ IA TGSGKTL + LP + KR R GP L++ P+RELA Q
Sbjct: 221 MIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYY 280
Query: 265 -EAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSY 323
++ S + C GG Q++ I GV ++VATPGRL D+L+ + +SL+ Y
Sbjct: 281 CRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRY 340
Query: 324 LVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
L LDEADRM+DMGFE IR I +RQTL+++AT P++++ A LV PV +N+G
Sbjct: 341 LALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGR 400
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQ 442
AA+ + Q +E + K L + L+ P +++F K D + L +
Sbjct: 401 AG--AASLDVIQEVEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKADVDAIHEYLLLKG 456
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
A AIHG K Q ER + FR G+ VLVATDVA++GLD I+ V+NYD P +E+Y
Sbjct: 457 VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENY 516
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPRELR 549
VHRI +A TF D DL LL AKQ+VP L+
Sbjct: 517 VHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQ 564
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
Identities = 159/408 (38%), Positives = 218/408 (53%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E R+++ + V GD +PPP SF FP +LR + G PTPIQ Q P L RD
Sbjct: 161 ERVRKKYHILVEGDGIPPPIKSFKEMKFPAAILRGLKKKGILHPTPIQIQGIPTILSGRD 220
Query: 214 IVAIAKTGSGKTLGYLLPGFIHL----KRCRNDPRLGPTVLVLSPTRELATQIQD----- 264
++ IA TGSGKTL + LP + KR R GP L++ P+RELA Q
Sbjct: 221 MIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYY 280
Query: 265 -EAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSY 323
++ S + C GG Q++ I GV ++VATPGRL D+L+ + +SL+ Y
Sbjct: 281 CRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRY 340
Query: 324 LVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
L LDEADRM+DMGFE IR I +RQTL+++AT P++++ A LV PV +N+G
Sbjct: 341 LALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGR 400
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQ 442
AA+ + Q +E + K L + L+ P +++F K D + L +
Sbjct: 401 AG--AASLDVIQEVEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKADVDAIHEYLLLKG 456
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
A AIHG K Q ER + FR G+ VLVATDVA++GLD I+ V+NYD P +E+Y
Sbjct: 457 VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENY 516
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPRELR 549
VHRI +A TF D DL LL AKQ+VP L+
Sbjct: 517 VHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQ 564
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 151/368 (41%), Positives = 215/368 (58%)
Query: 176 FDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIH 235
F + G +L + AG+++PTPIQ Q+ P+ +Q RDIV +A+TG+GKTL + P
Sbjct: 9 FQSLGLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDR 68
Query: 236 LKRCRND-PRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
L R + P G VLVL+PTRELA QI +G + + GGA G Q++ ++
Sbjct: 69 LSRNASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLE 128
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
RG I+VATPGRL D++E R +SL++V L+LDEAD+MLD+GF +R I K VP++RQT
Sbjct: 129 RGAHILVATPGRLIDLMEQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQT 188
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILR 414
L ++AT P+ V +AA L NP +V++ A I Q + + +K L + +R
Sbjct: 189 LFFSATMPKAVESLAATFLRNPAEVSVAPPATTAGR--IEQRVCFVEQPEKASLLIEKIR 246
Query: 415 SQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLV 473
E S I VF TK D + + L + + AIHG+KSQS+R+ L F+AGR P+LV
Sbjct: 247 DPELRSAI-VFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILV 305
Query: 474 ATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDL 533
ATD+AARG+ + + V+NYD P E +VHRI VA +F +D R
Sbjct: 306 ATDIAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCS-RDERPTLRA 364
Query: 534 IKLLEGAK 541
I+ L G K
Sbjct: 365 IEKLTGLK 372
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 158/408 (38%), Positives = 217/408 (53%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E R+++ + V GD +PPP SF P +LR + G PTPIQ Q P L RD
Sbjct: 160 ERVRKKYHILVEGDGIPPPIKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRD 219
Query: 214 IVAIAKTGSGKTLGYLLPGFIHL----KRCRNDPRLGPTVLVLSPTRELATQIQD----- 264
++ IA TGSGKTL + LP + KR R GP L++ P+RELA Q
Sbjct: 220 MIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYY 279
Query: 265 -EAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSY 323
++ S + C GG Q++ + GV I+VATPGRL D+L+ + +SL+ Y
Sbjct: 280 CRLLQEDSSPLLHCALCIGGVSLKEQMETMRHGVHIMVATPGRLMDLLQKKMVSLDICRY 339
Query: 324 LVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
L LDEADRM+DMGFE IR I +RQTL+++AT P++++ A LV PV +N+G
Sbjct: 340 LALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGR 399
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQ 442
AA+ + Q +E + K L + L+ P +++F K D + L +
Sbjct: 400 AG--AASLDVIQEVEYVKEEAKMVYLLECLQKTPP--PVLIFAKKKADVDAIHEYLLLKG 455
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
A AIHG K Q ER + FR G+ VLVATDVA++GLD I+ V+NYD P +E+Y
Sbjct: 456 VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENY 515
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPRELR 549
VHRI +A TF D DL LL AKQ+VP L+
Sbjct: 516 VHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQ 563
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 158/408 (38%), Positives = 217/408 (53%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E R+++ + V GD +PPP SF P +LR + G PTPIQ Q P L RD
Sbjct: 161 ERVRKKYHILVEGDGIPPPIKSFKEMKLPAAILRGLKKKGILHPTPIQIQGIPTILSGRD 220
Query: 214 IVAIAKTGSGKTLGYLLPGFIHL----KRCRNDPRLGPTVLVLSPTRELATQIQD----- 264
++ IA TGSGKTL + LP + KR R GP L++ P+RELA Q
Sbjct: 221 MIGIAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGILEYY 280
Query: 265 -EAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSY 323
++ S + C GG Q++ I GV ++VATPGRL D+L+ + +SL+ Y
Sbjct: 281 CRLLQEDSSPLLRCALCIGGMSVKEQMETIRHGVHMMVATPGRLMDLLQKKMVSLDICRY 340
Query: 324 LVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
L LDEADRM+DMGFE IR I +RQTL+++AT P++++ A LV PV +N+G
Sbjct: 341 LALDEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGR 400
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQ 442
AA+ + Q +E + K L + L+ P +++F K D + L +
Sbjct: 401 AG--AASLDVIQEVEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKADVDAIHEYLLLKG 456
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
A AIHG K Q ER + FR G+ VLVATDVA++GLD I+ V+NYD P +E+Y
Sbjct: 457 VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENY 516
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPRELR 549
VHRI +A TF D DL LL AKQ+VP L+
Sbjct: 517 VHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQ 564
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 640 (230.4 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
Identities = 156/412 (37%), Positives = 224/412 (54%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
EA R + V G+ PP SF FP +L + G +PTPIQ Q P L RD
Sbjct: 157 EAVRHELRILVEGETPSPPIRSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRD 216
Query: 214 IVAIAKTGSGKTLGYLLPGFIH-LKRCRNDP---RLGPTVLVLSPTRELATQIQDEAVKF 269
++ IA TGSGKTL ++LP + L++ + P GP L++ P+RELA Q + +
Sbjct: 217 LIGIAFTGSGKTLVFVLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHY 276
Query: 270 GKSSRISC------TCL-YGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVS 322
K + +C +CL GG P L I RGV IVVATPGRL D+L+ + ++L+
Sbjct: 277 SKHLQ-ACGMPEIRSCLAMGGLPVSEALDVISRGVHIVVATPGRLMDMLDKKILTLDMCR 335
Query: 323 YLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIG 382
YL +DEADRM+DMGFE +R I +RQTL+++AT P++++ A LV PV +N+G
Sbjct: 336 YLCMDEADRMIDMGFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVG 395
Query: 383 NVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-R 441
AA+ +TQ +E + K L L+ P +++F K+ D + L +
Sbjct: 396 RAG--AASMNVTQQVEYVKQEAKVVYLLDCLQKTAP--PVLIFAEKKQDVDCIHEYLLLK 451
Query: 442 QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVED 501
A AIHG K Q ER ++ +R G+ VLVATDVA++GLD +++ V+NYD P +E+
Sbjct: 452 GVEAVAIHGGKDQEERSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIEN 511
Query: 502 YVHRIXXXXXXXXXXVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPRELRDMA 552
YVHRI +A T + DL LL KQ+VP L ++A
Sbjct: 512 YVHRIGRTGRSNTKGLATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELA 563
Score = 39 (18.8 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 86 ENEDNSYGGRDTNA-GSK 102
ENED+S G D G K
Sbjct: 61 ENEDDSQGAHDVETWGRK 78
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 155/405 (38%), Positives = 216/405 (53%)
Query: 157 RRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVA 216
R+++ + V G+ +PPP SF FP +LR + G PTPIQ Q P L RD++
Sbjct: 160 RKKYHILVEGEGIPPPIKSFKEMKFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIG 219
Query: 217 IAKTGSGKTLGYLLPGFIHL----KRCRNDPRLGPTVLVLSPTRELATQIQD------EA 266
IA TGSGKTL + LP + KR R GP L++ P+RELA Q
Sbjct: 220 IAFTGSGKTLVFTLPVIMFCLEQEKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRL 279
Query: 267 VKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVL 326
++ + C GG Q++ I GV ++VATPGRL D+L+ + +SL+ YL L
Sbjct: 280 LQEDSLPPLRCALCIGGMSVKEQMETIKHGVHMMVATPGRLMDLLQKKMVSLDICRYLAL 339
Query: 327 DEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDE 386
DEADRM+DMGFE IR I +RQTL+++AT P++++ A LV P+ +N+G
Sbjct: 340 DEADRMIDMGFEGDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAG- 398
Query: 387 LAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGA 445
AA+ + Q +E + K L + L+ P +++F K D + L + A
Sbjct: 399 -AASLDVVQEVEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKADVDAIHEYLLLKGVEA 455
Query: 446 AAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHR 505
AIHG K Q ER + FR G+ VLVATDVA++GLD I+ V+NYD P +E+YVHR
Sbjct: 456 VAIHGGKDQEERTKAIEAFRDGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHR 515
Query: 506 IXXXXXXXXXXVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPRELR 549
I +A TF D DL LL AKQ+VP L+
Sbjct: 516 IGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQ 560
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 140/357 (39%), Positives = 210/357 (58%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
M F + GF P + + AG+ +PTPIQAQ+ P + RD++ +A+TG+GKT + LP
Sbjct: 1 MDFKSFGFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALP-I 59
Query: 234 IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293
+H R + R LV++PTRELA QI D V G+ +R+ +YGG PQ++ +
Sbjct: 60 LH--RLQQGERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKL 117
Query: 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
G ++VVA PGRL D + I L+++ LVLDEAD+M DMGF P IR+++K +P RRQ
Sbjct: 118 KAGAEVVVACPGRLLDHIAQGTIDLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQ 177
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRR---LE 410
TL+++AT P ++R +A D+LV+PV V +G V A H L P+++H + L
Sbjct: 178 TLLFSATMPIDIRTLAQDILVDPVTVQVGTV----APAVTVAH--ALYPVEQHLKTPLLL 231
Query: 411 QILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRS 469
++LR + S +++F TK +L L + + AA++ G+ SQ+ R L+ FR G
Sbjct: 232 ELLRHTDTES-VLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTF 290
Query: 470 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQD 526
+LVATD+AARG+D+ + V+NYD P E Y+HRI A+T D
Sbjct: 291 QILVATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDD 347
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 161/422 (38%), Positives = 227/422 (53%)
Query: 156 YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
+R ++ G +P P S++ + ELL+ V AG+ P+PIQ + P+ LQ RD++
Sbjct: 295 FREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVI 354
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRC-----RNDPRLGPTVLVLSPTRELATQIQDEAVKFG 270
IA+TGSGKT ++LP ++ R N+ GP +V++PTRELA QI++E VKF
Sbjct: 355 GIAETGSGKTAAFVLPMLAYISRLPPMSEENETE-GPYAVVMAPTRELAQQIEEETVKFA 413
Query: 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 330
T + GG Q I +G +IV+ATPGRL D LE R LNQ +Y+VLDEAD
Sbjct: 414 HYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEAD 473
Query: 331 RMLDMGFEPQIRKIVKEVPARR-----------QTLMYTATWP-REVRKIAADLLVNPVQ 378
RM+DMGFEPQ+ ++ +P+ + +Y T+ + L
Sbjct: 474 RMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFSATMPPGVERLARKYL 533
Query: 379 VNIGNVDELAANKA---ITQHIEVLAPMDKHRRLEQILRSQEPGSKI-IVFCSTKKMCDQ 434
N V A K I+QH+ ++ +K RL+++L E G K IVF +TKK CD
Sbjct: 534 RNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKLL--DELGEKTAIVFVNTKKNCDS 591
Query: 435 LARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNY 493
+A+NL + + +HG KSQ +R+ L FRA R VLVATDV RG+DI D+ V+NY
Sbjct: 592 IAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVGRGIDIPDVAHVINY 651
Query: 494 DFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPREL-RDMA 552
D P +E Y HRI VA +F D+ DL ++L + VP EL R A
Sbjct: 652 DMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQSNSAVPPELARHEA 711
Query: 553 SR 554
SR
Sbjct: 712 SR 713
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 649 (233.5 bits), Expect = 1.2e-63, P = 1.2e-63
Identities = 146/394 (37%), Positives = 220/394 (55%)
Query: 169 VPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGY 228
+P P + ++ F ++ + F PTP+Q+ WPIAL D++ I+KTGSGKTL +
Sbjct: 135 LPKPIDTIESVPFQ-STIKNFLSKKFEKPTPVQSLGWPIALSGSDMLGISKTGSGKTLSF 193
Query: 229 LLPGFIH-LKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKG 287
+LP H L + R GP+VLV++PTRELA QI EA ++ + I +YGGAP+
Sbjct: 194 ILPAIEHILAQPRQSYYPGPSVLVVAPTRELANQINQEAEQYLRLVNIEIATIYGGAPRR 253
Query: 288 PQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE 347
Q + R IVV TPGR+ D +E +SL +S+LV+DEADR+++MGFE QI I
Sbjct: 254 SQQLQLSRRPKIVVGTPGRIIDFMESGDLSLKNISFLVVDEADRLMEMGFEQQIDGIFNS 313
Query: 348 VPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVL-APMDKH 406
+ RQ L ++ATWP++V A + P+++ IG+ +L ANK I+Q +++ DK
Sbjct: 314 IRPDRQVLYWSATWPKKVSSFAEKHIRTPIRLQIGS-SQLTANKNISQKFKIVPTDADKV 372
Query: 407 RRLEQILR---SQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAI---HGDKSQSERDYV 460
L L S + ++ ++F TKK D L + I HGD Q+ R+ +
Sbjct: 373 DALMDTLGEIYSADEKAQTLIFTMTKKGADTLKHYIQSNGDNVRIDTLHGDVDQNRRERI 432
Query: 461 LNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYT 520
+ F+ R ++VATDVA+RGLDIK I V+N+ P+ E YVHRI +++
Sbjct: 433 VQDFKNKRLDIVVATDVASRGLDIKGISHVINFSLPSDCETYVHRIGRTGRAGALGTSHS 492
Query: 521 FFGDQ---DSRYASDLIKLLEGAKQQVPRELRDM 551
+ D DL LL+ ++Q+VP E D+
Sbjct: 493 ILSNNSLDDMELVGDLTNLLQRSEQEVPSEFLDI 526
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 400 (145.9 bits), Expect = 1.4e-63, Sum P(2) = 1.4e-63
Identities = 81/198 (40%), Positives = 120/198 (60%)
Query: 156 YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
+R +E+ + G VPPP ++ + +LL+ + A + PTPIQ Q+ PIAL+ RD++
Sbjct: 680 FREDNEIYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLI 739
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCR----NDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271
IA+TGSGKT ++LP ++K+ + GP LV++P+RELA QI +E KF
Sbjct: 740 GIAETGSGKTAAFVLPMLSYVKQLPPLTYETSQDGPYALVIAPSRELAIQIYEETNKFAS 799
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331
+ GG Q ++ RGV+IV+ TPGRL D LE LNQ +Y++LDEADR
Sbjct: 800 YCSCRTVAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVILDEADR 859
Query: 332 MLDMGFEPQIRKIVKEVP 349
M+DMGFE + I+ ++P
Sbjct: 860 MMDMGFEDTVHYILDKIP 877
Score = 319 (117.4 bits), Expect = 1.4e-63, Sum P(2) = 1.4e-63
Identities = 75/217 (34%), Positives = 122/217 (56%)
Query: 352 RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ 411
R T M++AT P V +++ L P ++IG D A ++I Q +E L K ++L++
Sbjct: 904 RLTQMFSATMPPSVERLSRKYLRAPAYISIG--DPGAGKRSIEQKLEFLTEGKKKQKLQE 961
Query: 412 ILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSP 470
IL EP IIVF + KK+ D +++++T+ ++ A A+HG K+Q R+ L+ F+
Sbjct: 962 ILEMYEP--PIIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKNAEFD 1019
Query: 471 VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYA 530
+LVATDVA RG+D+ +++V+N+D P +E Y HRI +A +F + DS
Sbjct: 1020 ILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHDSHLF 1079
Query: 531 SDLIKLLEGAKQQVPREL-RDMASR---GGGMGRPRR 563
DL + L + VP EL + AS+ G M P++
Sbjct: 1080 YDLKQFLISSNNIVPLELANNPASKVKPGTVMQTPKK 1116
Score = 40 (19.1 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEV 348
N +YL+ ++ + +EP++ I+K+V
Sbjct: 633 NYHNYLIKNKRGEYI---YEPKVNNIIKDV 659
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 400 (145.9 bits), Expect = 1.4e-63, Sum P(2) = 1.4e-63
Identities = 81/198 (40%), Positives = 120/198 (60%)
Query: 156 YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
+R +E+ + G VPPP ++ + +LL+ + A + PTPIQ Q+ PIAL+ RD++
Sbjct: 680 FREDNEIYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEKPTPIQMQAIPIALEMRDLI 739
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCR----NDPRLGPTVLVLSPTRELATQIQDEAVKFGK 271
IA+TGSGKT ++LP ++K+ + GP LV++P+RELA QI +E KF
Sbjct: 740 GIAETGSGKTAAFVLPMLSYVKQLPPLTYETSQDGPYALVIAPSRELAIQIYEETNKFAS 799
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331
+ GG Q ++ RGV+IV+ TPGRL D LE LNQ +Y++LDEADR
Sbjct: 800 YCSCRTVAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCLEKAYTVLNQCNYVILDEADR 859
Query: 332 MLDMGFEPQIRKIVKEVP 349
M+DMGFE + I+ ++P
Sbjct: 860 MMDMGFEDTVHYILDKIP 877
Score = 319 (117.4 bits), Expect = 1.4e-63, Sum P(2) = 1.4e-63
Identities = 75/217 (34%), Positives = 122/217 (56%)
Query: 352 RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ 411
R T M++AT P V +++ L P ++IG D A ++I Q +E L K ++L++
Sbjct: 904 RLTQMFSATMPPSVERLSRKYLRAPAYISIG--DPGAGKRSIEQKLEFLTEGKKKQKLQE 961
Query: 412 ILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSP 470
IL EP IIVF + KK+ D +++++T+ ++ A A+HG K+Q R+ L+ F+
Sbjct: 962 ILEMYEP--PIIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKNAEFD 1019
Query: 471 VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYA 530
+LVATDVA RG+D+ +++V+N+D P +E Y HRI +A +F + DS
Sbjct: 1020 ILVATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHDSHLF 1079
Query: 531 SDLIKLLEGAKQQVPREL-RDMASR---GGGMGRPRR 563
DL + L + VP EL + AS+ G M P++
Sbjct: 1080 YDLKQFLISSNNIVPLELANNPASKVKPGTVMQTPKK 1116
Score = 40 (19.1 bits), Expect = 2.2e-24, Sum P(2) = 2.2e-24
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 319 NQVSYLVLDEADRMLDMGFEPQIRKIVKEV 348
N +YL+ ++ + +EP++ I+K+V
Sbjct: 633 NYHNYLIKNKRGEYI---YEPKVNNIIKDV 659
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 151/402 (37%), Positives = 222/402 (55%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
M+F P +L+ V G++ PTP+QA + P AL++ D++A A+TG+GKT ++LP
Sbjct: 1 MTFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPAL 60
Query: 234 IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293
L P GP VLVL+PTRELA Q+ D +G R+ + GG P QL+ +
Sbjct: 61 QRLSSPPQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLL 120
Query: 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
VD +VATPGRL D+L+ R + L+++ LVLDEADRMLDMGF + +I PA RQ
Sbjct: 121 SAPVDFIVATPGRLVDLLDRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPATRQ 180
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL 413
TL++TAT + ++A LL P +++I ++ I Q + V + RL + L
Sbjct: 181 TLLFTATMDSAMARLAGRLLREPERIDIAGTK--TTHEHIEQRLHVADDLHHKNRLLRHL 238
Query: 414 RSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472
+ E + I+F +TK+ + LA L Q AAA+HGD Q+ R+ + + GR +L
Sbjct: 239 ITDESLRRAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRLL 298
Query: 473 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASD 532
VATDVAARGLD+ I V+N+D P EDYVHRI +A +F + Y +
Sbjct: 299 VATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNYLAR 358
Query: 533 LIKLLEGA--KQQVP-----RELRDMASRGG---GMGR-PRR 563
+ + + + +P R LR +++ G GMG P R
Sbjct: 359 IERYIGQTLPEHHIPGLEPSRPLRRVSAGSGRKPGMGAGPAR 400
>TAIR|locus:2828586 [details] [associations]
symbol:AT3G02065 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003723 EMBL:AC011664 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000006599 OMA:VTRPIID EMBL:AY065172
EMBL:BT001184 IPI:IPI00516794 IPI:IPI00525607 RefSeq:NP_001030621.1
RefSeq:NP_850499.1 RefSeq:NP_974208.1 UniGene:At.41185
UniGene:At.47211 ProteinModelPortal:Q3EBD3 SMR:Q3EBD3 IntAct:Q3EBD3
PaxDb:Q3EBD3 PRIDE:Q3EBD3 EnsemblPlants:AT3G02065.2
EnsemblPlants:AT3G02065.3 GeneID:821155 KEGG:ath:AT3G02065
GeneFarm:1017 TAIR:At3g02065 InParanoid:Q3EBD3 PhylomeDB:Q3EBD3
ProtClustDB:PLN00206 Genevestigator:Q3EBD3 Uniprot:Q3EBD3
Length = 505
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 148/410 (36%), Positives = 225/410 (54%)
Query: 157 RRRHEVTVSGD--EVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDI 214
RR+ ++ V G VPPP ++F + G PP+LL + AG+ PTPIQ Q+ P AL + +
Sbjct: 91 RRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSL 150
Query: 215 VAIAKTGSGKTLGYLLPGFIHLKRCR-------NDPRLGPTVLVLSPTRELATQIQDEAV 267
+A A TGSGKT +L+P I + RC +D R P +VL+PTREL Q++D+A
Sbjct: 151 LASADTGSGKTASFLVP--I-ISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAK 207
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
GK + GG P QL I +GV++++ TPGR+ D+L I L+ + VLD
Sbjct: 208 MLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVDLLSKHTIELDNIMTFVLD 267
Query: 328 EADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDEL 387
E D ML GF Q+ +I + + ++ Q L+++AT REV K+ L + V+IGN ++
Sbjct: 268 EVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISREVEKVGGSLAKEIILVSIGNPNK- 325
Query: 388 AANKAITQHIEVLAPMDKHRRLEQILRSQEPGSK-IIVFCSTKKMCDQLARNLTRQFG-- 444
NKA+ Q + K ++L ILRSQ +V+ S++ D LA +T G
Sbjct: 326 -PNKAVNQLAIWVDAKQKKQKLFDILRSQNHFKPPAVVYVSSRVGADLLANAITVVTGVK 384
Query: 445 AAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVH 504
A +IHG+K ER V+ F G PVLV+T V RG+D+ +R V+ +D P+ +++Y+H
Sbjct: 385 ALSIHGEKPMKERRDVMGSFLGGEVPVLVSTGVLGRGVDLLVVRQVIVFDMPSTIKEYIH 444
Query: 505 RIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMASR 554
I A F + D DL+ L+ + +P+EL ++ SR
Sbjct: 445 VIGRASRMGEKGTAIVFVNEDDRNLFPDLVAALKSSGAAIPKELINLTSR 494
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 135/337 (40%), Positives = 207/337 (61%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
M F + G +L+ + G+++P+PIQ Q+ P L +D++A A+TG+GKT G+ LP
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLP-I 59
Query: 234 IHLKRCRNDPRLGPT-VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKD 292
+ L R L+L+PTRELA QIQD + +G+ + ++GG PQ++
Sbjct: 60 LELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQR 119
Query: 293 IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARR 352
+ +G DI+VATPGRL D+ + +Q+ LVLDEADRMLDMGF I KI+K +P +R
Sbjct: 120 MCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKR 179
Query: 353 QTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI 412
Q L+++AT+ E+R++A L+ NPV++++ + A + + Q I P D ++ + +
Sbjct: 180 QNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA--RTVEQCIY---PADVKKKPDML 234
Query: 413 LRSQEPGS--KIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRS 469
++ + G+ +++VF TK ++LA L Q AAAIHG+KSQ R L F+AG
Sbjct: 235 VKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEV 294
Query: 470 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
+LVATD+AARG+DI + VVN++ P EDYVHRI
Sbjct: 295 RILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRI 331
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
Identities = 135/337 (40%), Positives = 207/337 (61%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
M F + G +L+ + G+++P+PIQ Q+ P L +D++A A+TG+GKT G+ LP
Sbjct: 1 MGFTSLGLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLP-I 59
Query: 234 IHLKRCRNDPRLGPT-VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKD 292
+ L R L+L+PTRELA QIQD + +G+ + ++GG PQ++
Sbjct: 60 LELLAKGPKVRANQVRALILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQR 119
Query: 293 IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARR 352
+ +G DI+VATPGRL D+ + +Q+ LVLDEADRMLDMGF I KI+K +P +R
Sbjct: 120 MCKGADILVATPGRLMDLYNQNAVKFDQLEILVLDEADRMLDMGFIRDIHKILKLLPEKR 179
Query: 353 QTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI 412
Q L+++AT+ E+R++A L+ NPV++++ + A + + Q I P D ++ + +
Sbjct: 180 QNLLFSATFSTEIRELAKGLVNNPVEISVSPANSTA--RTVEQCIY---PADVKKKPDML 234
Query: 413 LRSQEPGS--KIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRS 469
++ + G+ +++VF TK ++LA L Q AAAIHG+KSQ R L F+AG
Sbjct: 235 VKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEV 294
Query: 470 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
+LVATD+AARG+DI + VVN++ P EDYVHRI
Sbjct: 295 RILVATDIAARGIDIPQLPQVVNFELPKIAEDYVHRI 331
>TIGR_CMR|DET_0183 [details] [associations]
symbol:DET_0183 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000027 GenomeReviews:CP000027_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_180931.1 ProteinModelPortal:Q3ZA18
STRING:Q3ZA18 GeneID:3230538 KEGG:det:DET0183 PATRIC:21607443
OMA:NFAPAVM ProtClustDB:CLSK837629
BioCyc:DETH243164:GJNF-183-MONOMER Uniprot:Q3ZA18
Length = 560
Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 149/397 (37%), Positives = 220/397 (55%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
MSF++ F P ++ V G+ PTPIQAQ+ P L+ D++ +A+TG+GKT Y LP
Sbjct: 1 MSFESFNFAPAVMAGVRACGYQEPTPIQAQAIPPILEGHDVIGLAQTGTGKTAAYALPV- 59
Query: 234 IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293
+++ + PR LVL+PTRELA QI + G+ +RI +YGG Q++ +
Sbjct: 60 --IQKMLSTPRGRVRTLVLAPTRELACQIAESFRSLGQRARIRECSIYGGVNMDQQIRRL 117
Query: 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
GVD+VVA PGRL D + I + V L++DEADRM DMGF+P I+ I+K + Q
Sbjct: 118 RSGVDVVVACPGRLLDHIWRGTIDICGVETLIIDEADRMFDMGFQPDIQSILKCLVQPHQ 177
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL 413
TL+++AT P EVRK+ + NPV + IG A +++ + + K L +IL
Sbjct: 178 TLLFSATMPPEVRKLTLETQTNPVTIQIGTQ---APASSVSHSVYPVKNHQKTPLLIEIL 234
Query: 414 RSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472
++ E S +++F TK + LA ++R F A++ G+ SQ+ R V+ FR G +L
Sbjct: 235 KTTETKS-VLIFARTKYGAENLADEISRAGFTTASLQGNLSQNRRHAVMEGFRRGNFKIL 293
Query: 473 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASD 532
VATD+AARGLDI I V+NYD P EDY HRI A + +D D
Sbjct: 294 VATDIAARGLDIDHISHVINYDMPDTPEDYTHRIGRTGRFDRTGQALSLVTGRDGDMVRD 353
Query: 533 LIKLLEGAKQQVPRELRDMAS-RGGGMGRPRR--WAP 566
+ KL+ Q++ + D A+ R G +R +AP
Sbjct: 354 IQKLINSPIQRLRVDGFDYATTRNDGQNHSQRRGFAP 390
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 603 (217.3 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 148/405 (36%), Positives = 224/405 (55%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+F G +L+ V +G++ PTPIQ ++ P L D+ +A+TG+GKT ++LP
Sbjct: 5 TFADFGLAENILKAVTESGYTIPTPIQREAIPHILMGGDVTGVAQTGTGKTAAFVLPMIQ 64
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
L R R+ P L+L PTRELA Q+ + K+GK +++ L GG Q +
Sbjct: 65 RLSTGRARARM-PRCLILCPTRELAAQVAENFEKYGKYLKLTMALLIGGVSFKEQETLLQ 123
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
RGVD+++ATPGRL D + ++ + V L++DEADRMLDMGF P I KI ++PA RQT
Sbjct: 124 RGVDVLIATPGRLMDQFDRGKLLMMGVETLIIDEADRMLDMGFIPDIEKICAKLPANRQT 183
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMD-KHRR--LEQ 411
L+++AT+P +++++A +P ++ + + A + I+Q + L D K RR L +
Sbjct: 184 LLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQTA--ETISQFVVKLPTNDGKARRTALRR 241
Query: 412 ILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSP 470
++ + + I VFC+ K D +A +LT+ AA IHGD QS R L +FR G+
Sbjct: 242 VIEATNVKNGI-VFCNRKVEVDIVAASLTKHGHDAAPIHGDLPQSVRSETLQRFRDGKLK 300
Query: 471 VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYA 530
+LVA+DVAARGLDI D+ V N+ P EDYVHRI +YT D +
Sbjct: 301 LLVASDVAARGLDIPDVGHVFNFGPPPKDEDYVHRIGRTGRAGRTGESYTVVTPADDKSW 360
Query: 531 SDLIKLL---------EGAKQQV----PRELRDMASRGGGMGRPR 562
++K++ EG +++ P E RD + G G R R
Sbjct: 361 GFVVKMIKKDVPEFMPEGLLEELETLPPEEKRDRKTGGRGGDRDR 405
Score = 41 (19.5 bits), Expect = 3.3e-61, Sum P(2) = 3.3e-61
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 643 RGRSSPTPQHKSPFRERS 660
R R+ TPQ ++ RERS
Sbjct: 477 RERTEETPQPRAEKRERS 494
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 146/430 (33%), Positives = 225/430 (52%)
Query: 156 YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
+R + +T G ++P P S+ + PP +L + G+ PTPIQ Q+ PI LQ+RDI+
Sbjct: 373 FREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQRQAIPIGLQNRDII 432
Query: 216 AIAKTGSGKTLGYLLPGFIHLKRCRNDPRL-----GPTVLVLSPTRELATQIQDEAVKFG 270
+A+TGSGKT +L+P + + R+ GP ++L+PTRELA QI++E +KFG
Sbjct: 433 GVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRELAQQIEEETIKFG 492
Query: 271 KSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 330
K I + GG + Q + G +IV+ATPGRL D+LE R + L++ +Y+VLDEAD
Sbjct: 493 KPLGIRPVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVLENRYLVLSRCTYVVLDEAD 552
Query: 331 RMLDMGFEPQIRKIVKEVPARRQT------------LMYTATWPREVRKIAADLLVNPVQ 378
RM+DMGFEP ++KI++ +P Q L + + R+ L P+
Sbjct: 553 RMIDMGFEPDVQKILEHMPVSNQKPDTDEAEDPEKMLANFESGKHKYRQTLPCLSTPPIP 612
Query: 379 VNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARN 438
+ ++ L++ H +P +L + S+ + + C
Sbjct: 613 TRLLSLPSLSS-----AHPS--SPPSSPSPSPLLLCASPSLSRSLCCVLPRAHCSFFTSP 665
Query: 439 LTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTG 498
+Q+ A +HG K Q +R++ L+ +AG +LVATDVA RG+DI+D+ +VVNYD
Sbjct: 666 FFQQYNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKN 725
Query: 499 VEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIK-LLEGAKQQVPRELRDMASRGGG 557
+EDY+HRI VA TF +DS +L + +LE +P L + GG
Sbjct: 726 IEDYIHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSAIPPALE----KQGG 781
Query: 558 MGRPRRWAPT 567
G R PT
Sbjct: 782 SGH--REGPT 789
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 144/385 (37%), Positives = 218/385 (56%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
MSF + G L+R + AG++ PTP+Q ++ P LQ RD++ A+TG+GKT G+ LP
Sbjct: 1 MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 234 IHL-------KRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPK 286
L K R+ PR P VLVL+PTRELA Q+ + + + + C++GG
Sbjct: 61 ERLFPNGVPDKSQRHGPRQ-PRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGM 119
Query: 287 GPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVK 346
PQ++ + RGVD++VA PGRL D+ + L+ V LVLDEADRMLDMGF ++K++
Sbjct: 120 NPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLA 179
Query: 347 EVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKH 406
+PA+RQ L+++AT+ ++ +A LL NP ++ + + + I Q + LA K
Sbjct: 180 RLPAKRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTV--ERIEQRVFRLAANHKR 237
Query: 407 RRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFR 465
L ++ + +++VF TK ++LA L + A AIHG+KSQ+ R L F+
Sbjct: 238 SLLAHLI-TVGAWEQVLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFK 296
Query: 466 AGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQ 525
AG ++VATD+AARGLDI + VVN++ P EDYVHRI G+
Sbjct: 297 AGDVRIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRS-------GEA 349
Query: 526 DSRYASDLIKLLEGAKQQVPRELRD 550
S A D KLL+ ++ +++ D
Sbjct: 350 ISLVAPDEEKLLKSIERMTKQKIAD 374
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 142/374 (37%), Positives = 218/374 (58%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
M F++ F PE+LR + + G+ TPIQ Q+ P + +D++A A+TG+GKT + LP
Sbjct: 1 MRFESFSFCPEILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALP-- 58
Query: 234 IHLKRCRNDP---RLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 290
I K N + VL+L+PTRELA Q+ + + K S +YGG Q
Sbjct: 59 ILQKMVENPSETLKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQA 118
Query: 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350
+ + RG DI+VATPGRL + L +SL+ V +LVLDEADRMLDMGF I+KI++ V
Sbjct: 119 QKLKRGADIIVATPGRLLEHLTACNLSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNK 178
Query: 351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 410
+RQ L+++AT+ V+K+A ++++ P QV + A+ ++Q V+ P+++ R+ E
Sbjct: 179 KRQNLLFSATFSSAVKKLANEMMIKP-QVISADKQNTTAD-TVSQ---VVYPVEQRRKRE 233
Query: 411 QI--LRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAG 467
+ L ++ +++VF +T+ D L + L + +HG+K+Q R L +F +G
Sbjct: 234 LLSELIGKKNWQQVLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSG 293
Query: 468 RSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDS 527
+ VLVAT+VAARGLDI + VVN+D P EDYVHRI VA +F ++
Sbjct: 294 KVRVLVATEVAARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEE 353
Query: 528 RYASDLIKLLEGAK 541
R +D+ KL+ G K
Sbjct: 354 RTLADIEKLI-GQK 366
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 146/385 (37%), Positives = 217/385 (56%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
MSF + G L+ + AG++ PTP+Q ++ P LQ RD++ A+TG+GKT G+ LP
Sbjct: 1 MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL 60
Query: 234 IHL-------KRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPK 286
L K R+ PR P VLVL+PTRELA Q+ D + + + C++GG
Sbjct: 61 ERLFPNGHPDKSQRHGPRQ-PRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGM 119
Query: 287 GPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVK 346
PQ++ + RGVD++VA PGRL D+ + L+ V LVLDEADRMLDMGF ++K++
Sbjct: 120 NPQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLA 179
Query: 347 EVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKH 406
+PA+RQ L+++AT+ +++ +A LL NP ++ + + + I Q + L P
Sbjct: 180 RLPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTV--ERIEQRVFRL-PASHK 236
Query: 407 RRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFR 465
R L L + +++VF TK ++LA L + A AIHG+KSQ+ R L F+
Sbjct: 237 RALLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFK 296
Query: 466 AGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQ 525
AG +LVATD+AARGLDI + VVN++ P EDYVHRI G+
Sbjct: 297 AGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRS-------GEA 349
Query: 526 DSRYASDLIKLLEGAKQQVPRELRD 550
S A D KLL+ ++ +++ D
Sbjct: 350 ISLVAPDEEKLLKSIERMTKQKIAD 374
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 139/372 (37%), Positives = 213/372 (57%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLP-- 231
M+F + LL+ + + + PT IQ QS P+ L D++A A+TG+GKT + LP
Sbjct: 5 MTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL 64
Query: 232 -GFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 290
I ++ C+ P L LVL+PTRELA Q+ +G+ + ++ YGG Q+
Sbjct: 65 QQLISVQPCK--PEL--RALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQI 120
Query: 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350
++ GVDI++ATPGRL D+L +SL+ + LV DEADRMLDMGF+ +I +I + +P
Sbjct: 121 SELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPK 180
Query: 351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLA---PMDKHR 407
+QTL+++AT+ ++ K++ ++LV P V I DE NKA +E L D+ R
Sbjct: 181 TKQTLLFSATFADDIYKMSKNILVEPKMVEI---DE--KNKA-ADDVEQLVYGVDADRKR 234
Query: 408 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRA 466
L L +++VF TK+ D LA+ +T+ + AIHGDKSQ R+ L++F+
Sbjct: 235 ELTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKE 294
Query: 467 GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQD 526
G+ L+ATDVAARG+DIK + V+NY+ P EDYVHRI +A + +
Sbjct: 295 GKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGE 354
Query: 527 SRYASDLIKLLE 538
+ + +LL+
Sbjct: 355 EWLLTAIEELLD 366
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 139/372 (37%), Positives = 213/372 (57%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLP-- 231
M+F + LL+ + + + PT IQ QS P+ L D++A A+TG+GKT + LP
Sbjct: 5 MTFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPIL 64
Query: 232 -GFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 290
I ++ C+ P L LVL+PTRELA Q+ +G+ + ++ YGG Q+
Sbjct: 65 QQLISVQPCK--PEL--RALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQI 120
Query: 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350
++ GVDI++ATPGRL D+L +SL+ + LV DEADRMLDMGF+ +I +I + +P
Sbjct: 121 SELKVGVDILIATPGRLLDLLRTESVSLSNIETLVFDEADRMLDMGFKEEIDQITQYLPK 180
Query: 351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLA---PMDKHR 407
+QTL+++AT+ ++ K++ ++LV P V I DE NKA +E L D+ R
Sbjct: 181 TKQTLLFSATFADDIYKMSKNILVEPKMVEI---DE--KNKA-ADDVEQLVYGVDADRKR 234
Query: 408 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRA 466
L L +++VF TK+ D LA+ +T+ + AIHGDKSQ R+ L++F+
Sbjct: 235 ELTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKE 294
Query: 467 GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQD 526
G+ L+ATDVAARG+DIK + V+NY+ P EDYVHRI +A + +
Sbjct: 295 GKVRALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGE 354
Query: 527 SRYASDLIKLLE 538
+ + +LL+
Sbjct: 355 EWLLTAIEELLD 366
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 583 (210.3 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 138/401 (34%), Positives = 222/401 (55%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E RR+ +TV G VP P + F+ GFP L R + +G+ PTPIQ Q P+ L RD
Sbjct: 184 ENLRRQLGITVRGRGVPRPIVDFEHCGFPEALNRNLKASGYEVPTPIQMQMIPVGLLGRD 243
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS 273
++A A TGSGKT +LLP + R + + P+ LVL+PTRELA QI+ +A + S
Sbjct: 244 VLASADTGSGKTAAFLLPVIL---RALSQSK-SPSGLVLTPTRELAIQIERQAKEL--MS 297
Query: 274 RISC---TCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEAD 330
+ C L GG P PQ + + + +++ATPGRL DI++ R + L + +V+DEAD
Sbjct: 298 GLPCLRTALLVGGLPAPPQRHRLRQRIQVIIATPGRLLDIIKQRSVELGSIKIVVVDEAD 357
Query: 331 RMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAAN 390
ML MGF+ Q+ +++++P QT++ +AT P V ++A LL +PV + G + L
Sbjct: 358 TMLKMGFQQQVLDVLEQLPHDCQTVLASATIPASVEQLACQLLRDPVAITAGERN-LPC- 415
Query: 391 KAITQHIEVLAPMDKHRRLEQILRSQEPGSK-IIVFCSTKKMCDQLARNLTRQFG--AAA 447
++ Q + + K ++L +IL ++ ++VF K D L+ + + G + +
Sbjct: 416 PSVRQIVLWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSTS 475
Query: 448 IHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIX 507
+H DK+Q ER +L G V+V+T V RGLD+ +++VVN+D P+ +++YVH+I
Sbjct: 476 VHSDKTQMERKNILKGLLEGDYDVVVSTGVLGRGLDLVGVKLVVNFDMPSSMDEYVHQIG 535
Query: 508 XXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPREL 548
A TF + R D+ K ++ +P +L
Sbjct: 536 RVGRLGQHGTAITFINNNSKRLFWDIAKRVKPTGSLLPPQL 576
Score = 49 (22.3 bits), Expect = 6.1e-60, Sum P(2) = 6.1e-60
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 86 ENEDNSYGGRDTNAGSKLEA-GTRGNQSARGGPVQSHNIPNGTASVGVG 133
E ED G D S +A GT G +A Q H +P T V G
Sbjct: 28 EAEDR---GLDAGGDSLADASGTEGAAAAAHQGAQPHPLPGPTGPVSEG 73
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 143/357 (40%), Positives = 197/357 (55%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
M+F ELL + + G++ TPIQAQS P L D++ KTGSGKT + L G
Sbjct: 1 MAFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGL-GL 59
Query: 234 IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS-SRISCTCLYGGAPKGPQLKD 292
++ + R LVL PTRELA Q+ E + + L GG P GPQ+
Sbjct: 60 LNKLDVK---RFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGS 116
Query: 293 IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARR 352
++ G I+V TPGR+ D L+ R+ L+ ++ LVLDEADRML+MGF+PQ+ I+++ P R
Sbjct: 117 LEHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRER 176
Query: 353 QTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRR--LE 410
QTL+++AT+P +++ IA ++ NPV V E I QH L DK R L+
Sbjct: 177 QTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHE---KNTIEQHFYQLDD-DKSRMQALQ 232
Query: 411 QILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRS 469
+L +P S + VFC+TK+ ++A L F A+HGD Q +RD L QF +
Sbjct: 233 LLLLEHKPESAV-VFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSA 291
Query: 470 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQD 526
VLVATDVAARGLDI + V NY E ++HRI AYTF+ DQD
Sbjct: 292 CVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQD 348
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 143/357 (40%), Positives = 197/357 (55%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
M+F ELL + + G++ TPIQAQS P L D++ KTGSGKT + L G
Sbjct: 1 MAFSTLKLKTELLENLSSMGYNEMTPIQAQSLPAILAGEDVIGQGKTGSGKTAAFGL-GL 59
Query: 234 IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS-SRISCTCLYGGAPKGPQLKD 292
++ + R LVL PTRELA Q+ E + + L GG P GPQ+
Sbjct: 60 LNKLDVK---RFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMGPQIGS 116
Query: 293 IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARR 352
++ G I+V TPGR+ D L+ R+ L+ ++ LVLDEADRML+MGF+PQ+ I+++ P R
Sbjct: 117 LEHGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIEQSPRER 176
Query: 353 QTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRR--LE 410
QTL+++AT+P +++ IA ++ NPV V E I QH L DK R L+
Sbjct: 177 QTLLFSATFPEQIQSIAKQIMYNPVMVKAAVTHE---KNTIEQHFYQLDD-DKSRMQALQ 232
Query: 411 QILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRS 469
+L +P S + VFC+TK+ ++A L F A+HGD Q +RD L QF +
Sbjct: 233 LLLLEHKPESAV-VFCNTKRETQKVADELEGLGFSVLALHGDLEQRDRDETLLQFANKSA 291
Query: 470 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQD 526
VLVATDVAARGLDI + V NY E ++HRI AYTF+ DQD
Sbjct: 292 CVLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSKGAAYTFYNDQD 348
>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
symbol:PFE0430w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 625 (225.1 bits), Expect = 8.4e-60, P = 8.4e-60
Identities = 140/393 (35%), Positives = 223/393 (56%)
Query: 154 EAYRRRH-EVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSR 212
+ +R+ + + V G P P F G P ++L+ + F IQ Q+ P + R
Sbjct: 702 DMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKILQILEKKNFKKMYNIQMQTIPALMCGR 761
Query: 213 DIVAIAKTGSGKTLGYLLPGF---IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269
D++AIA+TGSGKTL YL P +H + RN+ GP ++L+PTREL+ Q+++EA +
Sbjct: 762 DVIAIAETGSGKTLSYLFPVIRHVLHQEPLRNND--GPISIILTPTRELSIQVKNEAKIY 819
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI---SLNQVSYLVL 326
K+ I +YGG+ QLK + +GV+I+V TPGR+ DIL + +LN+VS++VL
Sbjct: 820 CKAVNIEILAVYGGSNIARQLKVLKKGVEILVGTPGRIIDILTISNCKVTNLNRVSFVVL 879
Query: 327 DEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDE 386
DEADR+LD+GFE QI I++ +QT M +AT+P ++ +A LL P+++ +G +
Sbjct: 880 DEADRLLDLGFESQIYNILRNCRKDKQTAMISATFPNYIQNMAKKLLYKPIEIIVGEKGK 939
Query: 387 LAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGA 445
N I Q +E++ K RL ++L +++F + + D L L + +
Sbjct: 940 --TNNNIYQFVEIIEESKKVFRLLKLLGEWIKYGLVLIFVNKQIEADLLYLELYKYDYNL 997
Query: 446 AAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHR 505
+HG + Q++R + L +F+ + VL+AT V ARG+DIK+I +V+NY P +EDY+HR
Sbjct: 998 LVLHGGQDQTDRQFTLEKFKKEENKVLIATSVMARGIDIKNIILVINYQCPDHIEDYIHR 1057
Query: 506 IXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLE 538
I AYTF + A D+ LL+
Sbjct: 1058 IGRTGRSNNIGYAYTFILPNEYTKAYDIYNLLK 1090
>UNIPROTKB|Q8I416 [details] [associations]
symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 625 (225.1 bits), Expect = 8.4e-60, P = 8.4e-60
Identities = 140/393 (35%), Positives = 223/393 (56%)
Query: 154 EAYRRRH-EVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSR 212
+ +R+ + + V G P P F G P ++L+ + F IQ Q+ P + R
Sbjct: 702 DMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKILQILEKKNFKKMYNIQMQTIPALMCGR 761
Query: 213 DIVAIAKTGSGKTLGYLLPGF---IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF 269
D++AIA+TGSGKTL YL P +H + RN+ GP ++L+PTREL+ Q+++EA +
Sbjct: 762 DVIAIAETGSGKTLSYLFPVIRHVLHQEPLRNND--GPISIILTPTRELSIQVKNEAKIY 819
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI---SLNQVSYLVL 326
K+ I +YGG+ QLK + +GV+I+V TPGR+ DIL + +LN+VS++VL
Sbjct: 820 CKAVNIEILAVYGGSNIARQLKVLKKGVEILVGTPGRIIDILTISNCKVTNLNRVSFVVL 879
Query: 327 DEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDE 386
DEADR+LD+GFE QI I++ +QT M +AT+P ++ +A LL P+++ +G +
Sbjct: 880 DEADRLLDLGFESQIYNILRNCRKDKQTAMISATFPNYIQNMAKKLLYKPIEIIVGEKGK 939
Query: 387 LAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGA 445
N I Q +E++ K RL ++L +++F + + D L L + +
Sbjct: 940 --TNNNIYQFVEIIEESKKVFRLLKLLGEWIKYGLVLIFVNKQIEADLLYLELYKYDYNL 997
Query: 446 AAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHR 505
+HG + Q++R + L +F+ + VL+AT V ARG+DIK+I +V+NY P +EDY+HR
Sbjct: 998 LVLHGGQDQTDRQFTLEKFKKEENKVLIATSVMARGIDIKNIILVINYQCPDHIEDYIHR 1057
Query: 506 IXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLE 538
I AYTF + A D+ LL+
Sbjct: 1058 IGRTGRSNNIGYAYTFILPNEYTKAYDIYNLLK 1090
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 137/369 (37%), Positives = 209/369 (56%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
MSF A +L+ + G+ PTPIQ ++ P L +D++A A+TG+GKT + LP
Sbjct: 1 MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60
Query: 234 IHLKRCRNDPRLGPTV--LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 291
L + LVL PTRELA Q+Q VK+ K + I YGG Q
Sbjct: 61 QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120
Query: 292 DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPAR 351
+ G+D+++ATPGRL D L ++LNQ++ LV DEADRMLDMGF +I+ ++K+VPA+
Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180
Query: 352 RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ 411
RQTL+++AT + + +LL +P ++ + + AA I Q + + K +
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQ--IEQRVYAIDSDRKTEFVSH 238
Query: 412 ILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAA--AIHGDKSQSERDYVLNQFRAGRS 469
++RS+ ++++F TK+ D+L L + G A + HGD SQ R+ VL +F+ G
Sbjct: 239 LVRSKN-WQQVLIFSRTKQGVDKLTAQLNK-LGVATQSFHGDLSQGAREKVLQEFKQGLV 296
Query: 470 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRY 529
VLVATDVAARGLDI +++ V+N++ P EDY+HRI +A T F +D+
Sbjct: 297 QVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALL 356
Query: 530 ASDLIKLLE 538
++ LL+
Sbjct: 357 LEEVETLLD 365
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 137/369 (37%), Positives = 209/369 (56%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
MSF A +L+ + G+ PTPIQ ++ P L +D++A A+TG+GKT + LP
Sbjct: 1 MSFSALSLNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPIL 60
Query: 234 IHLKRCRNDPRLGPTV--LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 291
L + LVL PTRELA Q+Q VK+ K + I YGG Q
Sbjct: 61 QLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQA 120
Query: 292 DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPAR 351
+ G+D+++ATPGRL D L ++LNQ++ LV DEADRMLDMGF +I+ ++K+VPA+
Sbjct: 121 VFNAGIDVLIATPGRLLDHLRQGALNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQ 180
Query: 352 RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ 411
RQTL+++AT + + +LL +P ++ + + AA I Q + + K +
Sbjct: 181 RQTLLFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQ--IEQRVYAIDSDRKTEFVSH 238
Query: 412 ILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAA--AIHGDKSQSERDYVLNQFRAGRS 469
++RS+ ++++F TK+ D+L L + G A + HGD SQ R+ VL +F+ G
Sbjct: 239 LVRSKN-WQQVLIFSRTKQGVDKLTAQLNK-LGVATQSFHGDLSQGAREKVLQEFKQGLV 296
Query: 470 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRY 529
VLVATDVAARGLDI +++ V+N++ P EDY+HRI +A T F +D+
Sbjct: 297 QVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALL 356
Query: 530 ASDLIKLLE 538
++ LL+
Sbjct: 357 LEEVETLLD 365
>TIGR_CMR|CPS_1590 [details] [associations]
symbol:CPS_1590 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_268332.1 ProteinModelPortal:Q485D3
STRING:Q485D3 GeneID:3522084 KEGG:cps:CPS_1590 PATRIC:21466379
OMA:AISECGY ProtClustDB:CLSK768209
BioCyc:CPSY167879:GI48-1671-MONOMER Uniprot:Q485D3
Length = 455
Score = 506 (183.2 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 113/290 (38%), Positives = 167/290 (57%)
Query: 250 LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLND 309
L+L+PTRELA Q+ D +F + I +YGG Q K + +G+D++VATPGRL +
Sbjct: 95 LILTPTRELANQVADNIKQFSQYLPIKSGVVYGGGKMASQTKMLKQGLDVLVATPGRLLE 154
Query: 310 ILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIA 369
L +R + L+QV +LVLDEADRMLDMGF I K++ V + QTLM++AT+ V+ +A
Sbjct: 155 HLALRNVDLSQVKFLVLDEADRMLDMGFLTDIEKLLLAVKHKHQTLMFSATFSDRVKSLA 214
Query: 370 ADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTK 429
LL +P +++ + + K I Q + + K L +++ +++VF TK
Sbjct: 215 NQLLKSPKTISVSK-ENTTSGK-IKQAVYWVTEERKRELLSELIGVNN-WQQVLVFAGTK 271
Query: 430 KMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIR 488
+ + LA+ L AA HGDK+Q R+ L QF G+ VLVATDVAARGLDI D+
Sbjct: 272 ESANTLAKELKLDGIKAALCHGDKTQGARNKALEQFSEGKVRVLVATDVAARGLDIPDLA 331
Query: 489 VVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLE 538
VVN+ P EDYVHR+ A + +D R+ ++ +L+E
Sbjct: 332 FVVNFHLPFLPEDYVHRVGRTGRAGKSGTAISLVSPKDERFLENIEQLIE 381
Score = 121 (47.7 bits), Expect = 2.0e-59, Sum P(2) = 2.0e-59
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLP 231
MS D+ G +LL+ V G+ + TPIQ ++ P+ Q D++A A+TG+GKT + LP
Sbjct: 1 MSVDSIGLSADLLKAVKACGYKNLTPIQQEAIPVIRQGVDLLASAQTGTGKTAAFSLP 58
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 139/355 (39%), Positives = 198/355 (55%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
SF A PELL + GF++ TPIQAQS P L+ +D++ KTGSGKT + L
Sbjct: 5 SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS-SRISCTCLYGGAPKGPQLKDI 293
+L N R LVL PTRELA Q+ + G++ I L GG P GPQ+ +
Sbjct: 65 NL----NVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSL 120
Query: 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
+ G I+V TPGR+ D L RI L++++ LVLDEADRML+MGF+ + I+ PA RQ
Sbjct: 121 EHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQ 180
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL 413
TL+++AT+P + +IA + N + + + + ++ + +E A D+ LE +L
Sbjct: 181 TLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDE--ALETLL 238
Query: 414 RSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472
+P S + VFC+TK+ +A L + F +HGD Q ERD L QF +L
Sbjct: 239 LHHQPTSSV-VFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISIL 297
Query: 473 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDS 527
VATDVAARGLD+ ++ V NYD E +VHRI +A++FF D +S
Sbjct: 298 VATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNES 352
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 129/334 (38%), Positives = 200/334 (59%)
Query: 176 FDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIH 235
F G LL+ V + G+ +P+PIQAQ+ P + RD++A A+TG+GKT G+ LP
Sbjct: 8 FTDLGLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQR 67
Query: 236 LKRCRNDPRLGPTV--LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293
L + + V L+L+PTRELA QI + +GK + ++GG PQ+ +
Sbjct: 68 LSSSKGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARL 127
Query: 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
+GVD++VATPGRL D+ R + +Q+ +LDEADRMLDMGF I+K++ +P RQ
Sbjct: 128 RQGVDVLVATPGRLLDLYNQRAVKFSQLEVFILDEADRMLDMGFIRDIKKLMTALPKDRQ 187
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL 413
L+++AT+ E+R +A ++ NP+++++ + + A K +TQ + + K L ++
Sbjct: 188 NLLFSATFSPEIRALAKGMVNNPLEISV-DAENSTAEK-VTQWLTAVDKKRKPAVLTHLI 245
Query: 414 RSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472
+ +++VF TK ++L ++L + AAAIHG+KSQ R L F+ G +L
Sbjct: 246 KENN-WQQVLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKIL 304
Query: 473 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
VATD+AARG+DI + VVN+D P EDYVHRI
Sbjct: 305 VATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRI 338
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 573 (206.8 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 138/328 (42%), Positives = 195/328 (59%)
Query: 247 PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPK-GPQLKDIDRGVDIVVATPG 305
P+ LVLSPTREL+ QI +E+ KF + I+ LYGG Q+ + G I++ATPG
Sbjct: 316 PSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILIATPG 375
Query: 306 RLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVK--EVPARRQ--TLMYTATW 361
RL D+++ I + YLVLDEADRMLDMGFEPQIR+IV+ +P++ + T M++AT+
Sbjct: 376 RLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATF 435
Query: 362 PREVRKIAADLLV-NPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGS 420
P+E++ +A D L N V + +G V + N I Q I + +K L +L + S
Sbjct: 436 PKEIQLLAQDFLKENYVFLAVGRVGSTSEN--IMQKIVWVEEDEKRSYLMDLLDATGDSS 493
Query: 421 KIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAA 479
+VF TK+ LA L RQ + IHGD Q ER+ L+ FR G +P+LVAT VAA
Sbjct: 494 LTLVFVETKRGASDLAYYLNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAA 553
Query: 480 RGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEG 539
RGLDI +++ V+NYD P+ V++YVHRI +A +FF D++ A +L+ L+
Sbjct: 554 RGLDIPNVKHVINYDLPSDVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARELMDLIVE 613
Query: 540 AKQQVPRELR----DMASRGGGMGRPRR 563
A Q++P L DM S GG GR R
Sbjct: 614 ANQELPDWLEGMSGDMRSGGGYRGRGGR 641
Score = 373 (136.4 bits), Expect = 9.6e-32, P = 9.6e-32
Identities = 125/386 (32%), Positives = 186/386 (48%)
Query: 80 RHGYSPENE--DNSYGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGGS 137
R GY+ +E DN GR N + + G G Q+ R + + P+ S +G
Sbjct: 138 RGGYNNRDEGSDNRGSGRSYN-NDRRDNGGDG-QNTRWNNLDAP--PSRGTSKWENRGAR 193
Query: 138 STRXXXXXXXXXXXXXEAYRRRHEVTV--SGDEVPPPFMSFDATGFPPELLREVHNAGFS 195
R + + E+ V +GD+VP P F + + AG+
Sbjct: 194 DERIEQELFSGQLSGIN-FDKYEEIPVEATGDDVPQPISLFSDLSLHEWIEENIKTAGYD 252
Query: 196 SPTPIQAQSWPIALQS-RDIVAIAKTGSGKTLGYLLP----------GFIHLKRCRNDPR 244
PTP+Q S P ALQ RD+++ A+TGSGKT +L+P +H + R
Sbjct: 253 RPTPVQKYSIP-ALQGGRDLMSCAQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGR 311
Query: 245 LG--PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPK-GPQLKDIDRGVDIVV 301
P+ LVLSPTREL+ QI +E+ KF + I+ LYGG Q+ + G I++
Sbjct: 312 KKQYPSALVLSPTRELSLQIFNESRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILI 371
Query: 302 ATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVK--EVPARRQTLMYTA 359
ATPGRL D+++ I + YLVLDEADRMLDMGFEPQIR+IV+ +P++ + + TA
Sbjct: 372 ATPGRLIDVMDQGLIGMEGCRYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERI--TA 429
Query: 360 TWPREVRKIAADLLVNPVQVNIG--NVDELAA-NKAITQHIEVLAPMDKHRRLEQILRSQ 416
+ K L + ++ N V + + ++ I Q I + +K L +L +
Sbjct: 430 MFSATFPKEIQLLAQDFLKENYVFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDAT 489
Query: 417 EPGSKIIVFCSTKKMCDQLARNLTRQ 442
S +VF TK+ LA L RQ
Sbjct: 490 GDSSLTLVFVETKRGASDLAYYLNRQ 515
Score = 49 (22.3 bits), Expect = 6.9e-59, Sum P(2) = 6.9e-59
Identities = 19/59 (32%), Positives = 23/59 (38%)
Query: 80 RHGYSPENEDNSYGGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGGSS 138
R G D +Y R N G G RG + RGG +N + G GGSS
Sbjct: 83 RGGSGGYGRDRNYEDRGYNGGGG-GGGNRGYNNNRGGGGGGYNRQDR------GDGGSS 134
Score = 38 (18.4 bits), Expect = 9.9e-58, Sum P(2) = 9.9e-58
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 93 GGRDTNAGSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGGS 137
GG + G R N+ GG + N + + G G GG+
Sbjct: 65 GGGGYDRGYNDNRDDRDNRGGSGGYGRDRNYEDRGYNGGGGGGGN 109
Score = 37 (18.1 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 12/41 (29%), Positives = 14/41 (34%)
Query: 100 GSKLEAGTRGNQSARGGPVQSHNIPNGTASVGVGQGGSSTR 140
G A + G RGG G + G G GG R
Sbjct: 32 GGAAAAASAGGDDRRGG-AGGGGYRRGGGNSGGGGGGGYDR 71
>TIGR_CMR|SPO_1443 [details] [associations]
symbol:SPO_1443 "ATP-dependent RNA helicase RhlE"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_166684.1
ProteinModelPortal:Q5LTH1 GeneID:3193638 KEGG:sil:SPO1443
PATRIC:23376201 OMA:VPTHAED ProtClustDB:CLSK933557 Uniprot:Q5LTH1
Length = 471
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 147/397 (37%), Positives = 215/397 (54%)
Query: 176 FDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIH 235
F P++L+ + AG+ +PTPIQA + P AL+ RD++ IA+TG+GKT + LP
Sbjct: 4 FSELNLNPKVLKAIEEAGYETPTPIQAGAIPPALEGRDVLGIAQTGTGKTASFTLPMITL 63
Query: 236 LKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR 295
L R R R+ P LVL PTRELA Q+ + + K +++ L GG Q IDR
Sbjct: 64 LARGRARARM-PRSLVLCPTRELAAQVAENFDTYTKHLKLTKALLIGGVSFKEQDALIDR 122
Query: 296 GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 355
GVD+++ATPGRL D E ++ L V +V+DEADRMLDMGF P I +I P RQTL
Sbjct: 123 GVDVLIATPGRLLDHFERGKLLLTGVQIMVVDEADRMLDMGFIPDIERIFSLTPFTRQTL 182
Query: 356 MYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ---I 412
++AT E+ +I L P ++ + + A++ I Q + + + R + +
Sbjct: 183 FFSATMAPEIERITNTFLSAPARIEVAR--QATASETIEQGVVLFKGSRRDREASEKRAV 240
Query: 413 LRS--QEPGSKI---IVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRA 466
LR+ G K I+FC+ K D +A++L + + AA IHGD QS+R L+ FR
Sbjct: 241 LRALIDAEGEKCTNAIIFCNRKTDVDIVAKSLQKYGYDAAPIHGDLDQSQRTRTLDGFRE 300
Query: 467 GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQD 526
G+ +LVA+DVAARGLD+ + V N+D P EDYVHRI A T +D
Sbjct: 301 GKLRLLVASDVAARGLDVPSVSHVFNFDVPGHPEDYVHRIGRTGRAGRDGKAITLCIPRD 360
Query: 527 SRYASDLIKLLEGAKQQVPRELRDMASRGGGMGRPRR 563
+ + KL++ + +PR + +PRR
Sbjct: 361 EKALDAIEKLIQ---KDIPRLENPARTEEKPEAKPRR 394
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 400 (145.9 bits), Expect = 1.9e-58, Sum P(3) = 1.9e-58
Identities = 79/199 (39%), Positives = 117/199 (58%)
Query: 156 YRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIV 215
++ ++ G P P ++ + P E+L + G+ P+PIQ QS PI+L RDI+
Sbjct: 395 FKEDFNISTKGGIAPNPIRTWQESNLPREILEAIRQLGYEKPSPIQMQSIPISLTGRDIL 454
Query: 216 AIAKTGSGKTLGYLLPGFIHLK---RCRNDPRL-GPTVLVLSPTRELATQIQDEAVKFGK 271
IA+TGSGKT +++P I++ R D GP LV++PTREL QI+ E F +
Sbjct: 455 GIAETGSGKTCAFVIPMLIYISKQPRLTKDTEADGPYALVMAPTRELVQQIEKETRNFAQ 514
Query: 272 SSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331
L GG Q + +G +I++ATPGRLND LE R + LNQ +Y+VLDEAD
Sbjct: 515 HFGFRVVSLVGGQSIEDQAYQVSKGCEIIIATPGRLNDCLEKRYLVLNQCNYIVLDEADM 574
Query: 332 MLDMGFEPQIRKIVKEVPA 350
M+D+GFEPQ+ ++ +P+
Sbjct: 575 MIDLGFEPQVTSVLDAMPS 593
Score = 262 (97.3 bits), Expect = 1.9e-58, Sum P(3) = 1.9e-58
Identities = 63/198 (31%), Positives = 99/198 (50%)
Query: 352 RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ 411
R T++++AT P V K++ L P + IG ++ T I V + DK L Q
Sbjct: 616 RTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVDRIRQTV-IFVKSENDKKEHLTQ 674
Query: 412 ILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSP 470
+++ P II+F + KK CD +A L + +H +SQ +R+ L F+ +
Sbjct: 675 LIKDGPP-PPIIIFVNKKKHCDIIAPVLEECRVSYTILHSGRSQEQREAALEGFKKRKYE 733
Query: 471 VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYA 530
VL+AT VA+RG+ + + V+N+D P +EDY HRI +A +F D+D
Sbjct: 734 VLIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGSAGLASSFITDKDVEIM 793
Query: 531 SDLIKLLEGAKQQVPREL 548
DL ++L VP EL
Sbjct: 794 YDLKQILTSTNNIVPIEL 811
Score = 38 (18.4 bits), Expect = 1.9e-58, Sum P(3) = 1.9e-58
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 83 YSPENEDNSYGGRDTNAGSKLE 104
Y +N+++ GG N+ K E
Sbjct: 200 YGRDNDNSGGGGSGKNSSDKKE 221
>UNIPROTKB|Q8EDC4 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 136/356 (38%), Positives = 205/356 (57%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
M F LL+ + + G ++PT IQ Q+ PIAL +D++A +KTGSGKTL +LLP
Sbjct: 1 MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60
Query: 234 IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293
+ R + P VL+L PTRELA Q+ + +++ + GG Q K +
Sbjct: 61 QRVISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120
Query: 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP-ARR 352
+ +VATPGR+ D LE + + LN + L+LDEADRMLD+GF PQ++ I + RR
Sbjct: 121 AKEPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRR 180
Query: 353 QTLMYTATWPR-EVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ 411
QTLM++AT E+ +IAA LL NP+ V IG A ++ I+Q I + +D L
Sbjct: 181 QTLMFSATLDHSEINEIAAALLKNPLHVAIGTAH--AEHQDISQRIYLCDHLDHKEALLS 238
Query: 412 ILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSP 470
L S E ++I+F +T+ ++LA L+ Q F AA+ G+ Q+ R+ +++QF G+
Sbjct: 239 RLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQ 298
Query: 471 VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQD 526
+LV TDVA+RGLD+ ++ +V+N+D P E+YVHRI A + G +D
Sbjct: 299 ILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKD 354
>TIGR_CMR|SO_2838 [details] [associations]
symbol:SO_2838 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK869483 RefSeq:NP_718410.1 ProteinModelPortal:Q8EDC4
GeneID:1170534 KEGG:son:SO_2838 PATRIC:23525314 OMA:LAGHDIF
Uniprot:Q8EDC4
Length = 449
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 136/356 (38%), Positives = 205/356 (57%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
M F LL+ + + G ++PT IQ Q+ PIAL +D++A +KTGSGKTL +LLP
Sbjct: 1 MQFTDFSLDQRLLQSLKHMGIATPTAIQEQALPIALAGKDLMASSKTGSGKTLAFLLPAL 60
Query: 234 IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293
+ R + P VL+L PTRELA Q+ + +++ + GG Q K +
Sbjct: 61 QRVISTRALSKRDPRVLILLPTRELAHQVYSQLRLLVANTQYKAISVLGGENFNDQAKAL 120
Query: 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP-ARR 352
+ +VATPGR+ D LE + + LN + L+LDEADRMLD+GF PQ++ I + RR
Sbjct: 121 AKEPHFIVATPGRIADHLEQKNLFLNGLELLILDEADRMLDLGFAPQLKAINEAADHKRR 180
Query: 353 QTLMYTATWPR-EVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQ 411
QTLM++AT E+ +IAA LL NP+ V IG A ++ I+Q I + +D L
Sbjct: 181 QTLMFSATLDHSEINEIAAALLKNPLHVAIGTAH--AEHQDISQRIYLCDHLDHKEALLS 238
Query: 412 ILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSP 470
L S E ++I+F +T+ ++LA L+ Q F AA+ G+ Q+ R+ +++QF G+
Sbjct: 239 RLLSDESHKQVIIFTATRADTERLAAKLSAQGFATAALSGELKQAARNQIMDQFARGQQQ 298
Query: 471 VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQD 526
+LV TDVA+RGLD+ ++ +V+N+D P E+YVHRI A + G +D
Sbjct: 299 ILVTTDVASRGLDLLNVSLVINFDMPKFAEEYVHRIGRTGRAGAKGDAISLVGPKD 354
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 137/375 (36%), Positives = 207/375 (55%)
Query: 176 FDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIH 235
F G LL+ V++ GF PTPIQ ++ P+ L+ ++V A TG+GKT YLLP
Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63
Query: 236 LKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR 295
++R + VL+++PTRELA Q+ DE K GK ++ +YGG Q++ + +
Sbjct: 64 IQRGKK-----AQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQ 118
Query: 296 GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 355
GV+++V TPGR+ D + + ++ ++LDEAD MLDMGF I I+ + R+QTL
Sbjct: 119 GVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTL 178
Query: 356 MYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRS 415
+++AT P ++ I L V + ++ AI Q L +K L IL S
Sbjct: 179 LFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVP--AIRQVYYELPETEKIEGLVSILNS 236
Query: 416 QEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVA 474
+ P + IVFC TKK D++ L R + A +HGD SQ ER + F+AG++ +LVA
Sbjct: 237 ELP-IQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVA 295
Query: 475 TDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLI 534
TDVAARGLDI D+ V+N+D P E Y+HRI A T ++ + L+
Sbjct: 296 TDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERK----LL 351
Query: 535 KLLEGA-KQQVPREL 548
K +E A +++ RE+
Sbjct: 352 KAIEEAINKRLKREI 366
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
Identities = 137/375 (36%), Positives = 207/375 (55%)
Query: 176 FDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIH 235
F G LL+ V++ GF PTPIQ ++ P+ L+ ++V A TG+GKT YLLP
Sbjct: 4 FKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPVLQR 63
Query: 236 LKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR 295
++R + VL+++PTRELA Q+ DE K GK ++ +YGG Q++ + +
Sbjct: 64 IQRGKK-----AQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQ 118
Query: 296 GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 355
GV+++V TPGR+ D + + ++ ++LDEAD MLDMGF I I+ + R+QTL
Sbjct: 119 GVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQQTL 178
Query: 356 MYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRS 415
+++AT P ++ I L V + ++ AI Q L +K L IL S
Sbjct: 179 LFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVP--AIRQVYYELPETEKIEGLVSILNS 236
Query: 416 QEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVA 474
+ P + IVFC TKK D++ L R + A +HGD SQ ER + F+AG++ +LVA
Sbjct: 237 ELP-IQAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKTELLVA 295
Query: 475 TDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLI 534
TDVAARGLDI D+ V+N+D P E Y+HRI A T ++ + L+
Sbjct: 296 TDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERK----LL 351
Query: 535 KLLEGA-KQQVPREL 548
K +E A +++ RE+
Sbjct: 352 KAIEEAINKRLKREI 366
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 141/374 (37%), Positives = 209/374 (55%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
M FD G LL + G+ T +Q Q P+AL +DI+A A+TG+GKT + LP
Sbjct: 1 MKFDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVL 60
Query: 234 IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293
L D L LV++PTRELA Q+ K+ + + +YGGA PQ K +
Sbjct: 61 EQLAAKPADKPL-LRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGV 119
Query: 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
++GVDI+VATPGRL DI+ + L+ V+ LV+DEADRMLD+GF I K+ + + Q
Sbjct: 120 EQGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQ 179
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI- 412
T++++AT+ V++++ +L P VN+ A N + +++ +DK R+ E +
Sbjct: 180 TMLFSATYSDAVKQLSHKMLNQPQWVNV------AENTTASTVEQLVYRVDKRRKAELLS 233
Query: 413 -LRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSP 470
L + +++VF STK+ + L + LT A HGDK+Q R+ VL+ F+AG+
Sbjct: 234 ELVGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLR 293
Query: 471 VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYA 530
VLVATDVAARGLDI+ + +V+N + P EDYVHRI A +F D
Sbjct: 294 VLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEML 353
Query: 531 SDLIKLLEGAKQQV 544
++ I+ L G K V
Sbjct: 354 AE-IEALIGEKLPV 366
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 141/374 (37%), Positives = 209/374 (55%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
M FD G LL + G+ T +Q Q P+AL +DI+A A+TG+GKT + LP
Sbjct: 1 MKFDTLGLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVL 60
Query: 234 IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293
L D L LV++PTRELA Q+ K+ + + +YGGA PQ K +
Sbjct: 61 EQLAAKPADKPL-LRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGV 119
Query: 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
++GVDI+VATPGRL DI+ + L+ V+ LV+DEADRMLD+GF I K+ + + Q
Sbjct: 120 EQGVDILVATPGRLFDIIGQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQ 179
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI- 412
T++++AT+ V++++ +L P VN+ A N + +++ +DK R+ E +
Sbjct: 180 TMLFSATYSDAVKQLSHKMLNQPQWVNV------AENTTASTVEQLVYRVDKRRKAELLS 233
Query: 413 -LRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSP 470
L + +++VF STK+ + L + LT A HGDK+Q R+ VL+ F+AG+
Sbjct: 234 ELVGRNNWRQVLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLR 293
Query: 471 VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYA 530
VLVATDVAARGLDI+ + +V+N + P EDYVHRI A +F D
Sbjct: 294 VLVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPADDEML 353
Query: 531 SDLIKLLEGAKQQV 544
++ I+ L G K V
Sbjct: 354 AE-IEALIGEKLPV 366
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 150/466 (32%), Positives = 244/466 (52%)
Query: 105 AGTRGNQSAR-GGPVQSHNIPNGTASVGVG-QGGSSTRXXXXXXXXXXXXXEAYRRR--H 160
A TR + A G P G + G+ Q G E+ RR
Sbjct: 36 AATRVSDLALIGSSDVKAGFPFGVEAKGIHFQSGPLDFRASMVSQAGFAISESSERRVGD 95
Query: 161 EVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKT 220
+V GD ++ G PE+++ + + G PIQ A++ RD++ A+T
Sbjct: 96 SESVGGDG-----LAISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRART 150
Query: 221 GSGKTLGYLLPGFIHLKR--CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS-RISC 277
G+GKTL + +P + + ++ P LVL+PTRELA Q++ E F +S+ +
Sbjct: 151 GTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKE---FRESAPSLDT 207
Query: 278 TCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGF 337
CLYGG P G Q++ +D GVD+ V TPGR+ D+++ ++L++V ++VLDEAD+ML +GF
Sbjct: 208 ICLYGGTPIGQQMRQLDYGVDVAVGTPGRVIDLMKRGALNLSEVQFVVLDEADQMLQVGF 267
Query: 338 EPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVN-IGNVDELAANKAITQH 396
+ I++++P +RQ++M++AT P +R + L NP+ V+ +G+ D+ A+ IT +
Sbjct: 268 AEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLAD-GITTY 326
Query: 397 IEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSE 456
+ + + ++ G K IVF TK+ D+L+ L R F A+HGD SQS+
Sbjct: 327 SIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALARSFKCEALHGDISQSQ 386
Query: 457 RDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXX 516
R+ L FR G +LVATDVAARGLD+ ++ ++++Y+ P E +VHR
Sbjct: 387 RERTLAGFRDGHFNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKG 446
Query: 517 VAYTFFGDQDSRYASDLIKLLEGAK-QQVPREL--RDMASRGGGMG 559
A + SR A +I+ G++ ++P R AS G+G
Sbjct: 447 SAILIYSQDQSR-AVKIIEREVGSRFTELPSIAVERGSASMFEGIG 491
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 567 (204.7 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 133/367 (36%), Positives = 206/367 (56%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+F G +L +++ G+ P+PIQA+ P L RD++ +A+TGSGKT + LP
Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66
Query: 235 HLKRCRNDPRL-GPTVLVLSPTRELATQIQDEAVKFGKSSR-ISCTCLYGGAPKGPQLKD 292
+L DP L P +LVL+PTRELA Q+ + F K R ++ LYGG QL+
Sbjct: 67 NL-----DPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 293 IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARR 352
+ +G IVV TPGRL D L+ + L+++S LVLDEAD ML MGF + I+ ++P
Sbjct: 122 LRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGH 181
Query: 353 QTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI 412
QT +++AT P +R+I + P +V I + + I+Q + M K+ L +
Sbjct: 182 QTALFSATMPEAIRRITRRFMKEPQEVRIQS--SVTTRPDISQSYWTVWGMRKNEALVRF 239
Query: 413 LRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPV 471
L +++ + II F TK ++A L R + +AA++GD +Q+ R+ L + + GR +
Sbjct: 240 LEAEDFDAAII-FVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDI 298
Query: 472 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYAS 531
L+ATDVAARGLD++ I +VVNYD P E YVHRI A F +++ R
Sbjct: 299 LIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLR 358
Query: 532 DLIKLLE 538
++ + ++
Sbjct: 359 NIERTMK 365
Score = 43 (20.2 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 545 PRELRDMASRGGGMGRPRR 563
PR+ D RG RPRR
Sbjct: 460 PRDRNDRGPRGDREDRPRR 478
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 138/399 (34%), Positives = 222/399 (55%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E +R+ + V G +V P + F+ GFP L + +G+ PTPIQ Q P+ L RD
Sbjct: 184 ENLKRQLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRD 243
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS- 272
++A A TGSGKT +LLP I C + P+ L+L+PTRELA QI+++A +
Sbjct: 244 VLASADTGSGKTAAFLLP-VITRALCESKT---PSALILTPTRELAIQIENQAKELMSGL 299
Query: 273 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332
R+ L GG P PQL + + V +++ATPGRL DI++ + L + +V+DEAD M
Sbjct: 300 PRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVELCGIKIVVVDEADTM 359
Query: 333 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKA 392
L MGF+ Q+ I++ VP QT++ +AT P + ++A+ LL NPV++ G + L + +
Sbjct: 360 LKMGFQQQVLDILEHVPNDSQTILVSATIPTSIEQLASQLLHNPVRIITGEKN-LPCS-S 417
Query: 393 ITQHIEVLAPMDKHRRLEQILRSQEPGSK-IIVFCSTKKMCDQLARNLTRQFG--AAAIH 449
+ Q I + K ++L +IL ++ ++VF K D L+ + + G + +IH
Sbjct: 418 VRQIILWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIH 477
Query: 450 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXX 509
+KSQ+ER +L G V+V+T V RGLD+ +R+VVN+D P+ +++YVH++
Sbjct: 478 SEKSQTERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQVGRV 537
Query: 510 XXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPREL 548
A TF + R D+ K ++ +P +L
Sbjct: 538 GRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQL 576
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 138/380 (36%), Positives = 211/380 (55%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLP-- 231
++F G LL + G ++PTPIQ Q+ P LQ +D++A A+TG+GKT + LP
Sbjct: 6 ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
Query: 232 -GFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 290
FI R LVL PTRELA Q+ D + K + + +YGG QL
Sbjct: 66 QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125
Query: 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350
+ GVDI++ATPGRL D ++ + L +V LVLDEADRMLDMGF P ++++++ +
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185
Query: 351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 410
RQTL ++AT+ +++ +A ++ +P++V + + A + + Q ++ P+DK R+ E
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTA--ETVQQ---MVYPVDKKRKRE 240
Query: 411 QI--LRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAG 467
+ L + +++VF T++ D LA L A +I+GDKSQ R L+ F+AG
Sbjct: 241 LLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAG 300
Query: 468 RSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDS 527
+ L+ATDVAARGLDI + VVNYD P EDYVHRI +A + +
Sbjct: 301 KVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQ 360
Query: 528 RYASDLIKLLEGAKQQVPRE 547
+ +LL ++P+E
Sbjct: 361 PQLEAIERLLN---TRLPQE 377
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
Identities = 138/380 (36%), Positives = 211/380 (55%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLP-- 231
++F G LL + G ++PTPIQ Q+ P LQ +D++A A+TG+GKT + LP
Sbjct: 6 ITFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLI 65
Query: 232 -GFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 290
FI R LVL PTRELA Q+ D + K + + +YGG QL
Sbjct: 66 QRFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQL 125
Query: 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350
+ GVDI++ATPGRL D ++ + L +V LVLDEADRMLDMGF P ++++++ +
Sbjct: 126 NHLRGGVDILIATPGRLLDHAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRLSP 185
Query: 351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 410
RQTL ++AT+ +++ +A ++ +P++V + + A + + Q ++ P+DK R+ E
Sbjct: 186 LRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTA--ETVQQ---MVYPVDKKRKRE 240
Query: 411 QI--LRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAG 467
+ L + +++VF T++ D LA L A +I+GDKSQ R L+ F+AG
Sbjct: 241 LLSYLIGSKNWQQVLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKAG 300
Query: 468 RSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDS 527
+ L+ATDVAARGLDI + VVNYD P EDYVHRI +A + +
Sbjct: 301 KVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDEQ 360
Query: 528 RYASDLIKLLEGAKQQVPRE 547
+ +LL ++P+E
Sbjct: 361 PQLEAIERLLN---TRLPQE 377
>TAIR|locus:504955106 [details] [associations]
symbol:emb1138 "embryo defective 1138" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 InterPro:IPR012562
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 Pfam:PF08152 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0046872 GO:GO:0008270
GO:GO:0009941 GO:GO:0003723 EMBL:AF058914 Gene3D:4.10.60.10
SUPFAM:SSF57756 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268805 UniGene:At.23875 EMBL:AJ010457 EMBL:AC137518
EMBL:AY080625 EMBL:AY091068 EMBL:AY094485 EMBL:AY123000
EMBL:AY128278 EMBL:BT000713 EMBL:BT002289 EMBL:BT002456
EMBL:AY102126 EMBL:BT004533 EMBL:AK229821 IPI:IPI00523172
IPI:IPI00656967 PIR:T01202 PIR:T51738 RefSeq:NP_001031943.1
RefSeq:NP_680225.2 UniGene:At.66764 ProteinModelPortal:Q8L7S8
SMR:Q8L7S8 STRING:Q8L7S8 PaxDb:Q8L7S8 PRIDE:Q8L7S8
EnsemblPlants:AT5G26742.2 GeneID:832713 KEGG:ath:AT5G26742
GeneFarm:1570 TAIR:At5g26742 InParanoid:Q8L7S8 OMA:ISHEQGW
PhylomeDB:Q8L7S8 ProtClustDB:CLSN2680279 Genevestigator:Q8L7S8
Uniprot:Q8L7S8
Length = 748
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 134/339 (39%), Positives = 196/339 (57%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
++ P L + G + PIQ ALQ RDI+A AKTG+GKTL + +P
Sbjct: 102 LAISKLSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPII 161
Query: 234 IHLKRCRND----PRLG--PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKG 287
L D R G P LVL+PTRELA Q++ E +K + +S C+YGG
Sbjct: 162 KRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKE-IK-ESAPYLSTVCVYGGVSYT 219
Query: 288 PQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE 347
Q + RGVD+VV TPGR+ D++E R + L +V YLVLDEAD+ML +GFE + I++
Sbjct: 220 IQQSALTRGVDVVVGTPGRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILEN 279
Query: 348 VPARRQTLMYTATWPREVRKIAADLLVNPVQVN-IGNVDELAANKAITQHIEVLAPMDKH 406
+P +RQ+++++AT P V+K+A L NP+ ++ +G+ DE A + I + K
Sbjct: 280 LPTKRQSMLFSATMPTWVKKLARKYLDNPLNIDLVGDQDEKLA-EGIKLYAIATTSTSKR 338
Query: 407 RRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRA 466
L ++ G K IVF TK+ D+++ L+ A+HGD SQ +R+ LN FR
Sbjct: 339 TILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEALHGDISQHQRERTLNAFRQ 398
Query: 467 GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHR 505
G+ VLVATDVA+RGLDI ++ +V++Y+ P E +VHR
Sbjct: 399 GKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHR 437
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 131/378 (34%), Positives = 207/378 (54%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
SF G L + G+ SPTP+QA + P L RD++A A TGSGKT + LP
Sbjct: 10 SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69
Query: 235 HLKRCRNDPRLGPTV--LVLSPTRELATQIQDEAVKFGK--SSRISCTCLYGGAPKGPQL 290
L ++ + V LVL PTRELA Q+ D + + + ++ +GG Q+
Sbjct: 70 RLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQM 129
Query: 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350
+ + G D++VATPGRL D+L + L QVS VLDEADRML +GF ++ +++ +P
Sbjct: 130 QSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPR 189
Query: 351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 410
++QTL+++AT+P EVR + LL P++ ++ + E I Q + + K L
Sbjct: 190 QKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQE----STIEQRVITVNREQKTALLA 245
Query: 411 QILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRS 469
+++ Q S+ ++F S K C+ LA+ L+++ A HGDK+Q R VL+ F+ G
Sbjct: 246 HLIK-QHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEI 304
Query: 470 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRY 529
VL+ATD+AARG+DI + VV+N+D P DY+HRI +A T ++ +
Sbjct: 305 SVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHH 364
Query: 530 ASDLIKL--LEGAKQQVP 545
+ K ++ ++Q+P
Sbjct: 365 FGVIEKKNKIKLVREQIP 382
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 131/378 (34%), Positives = 207/378 (54%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
SF G L + G+ SPTP+QA + P L RD++A A TGSGKT + LP
Sbjct: 10 SFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPLLQ 69
Query: 235 HLKRCRNDPRLGPTV--LVLSPTRELATQIQDEAVKFGK--SSRISCTCLYGGAPKGPQL 290
L ++ + V LVL PTRELA Q+ D + + + ++ +GG Q+
Sbjct: 70 RLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNLQM 129
Query: 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350
+ + G D++VATPGRL D+L + L QVS VLDEADRML +GF ++ +++ +P
Sbjct: 130 QSLRAGADVLVATPGRLLDLLASNALKLTQVSAFVLDEADRMLSLGFTEELEQVLAALPR 189
Query: 351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 410
++QTL+++AT+P EVR + LL P++ ++ + E I Q + + K L
Sbjct: 190 QKQTLLFSATFPEEVRALTTKLLHQPLEYHLQSEQE----STIEQRVITVNREQKTALLA 245
Query: 411 QILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRS 469
+++ Q S+ ++F S K C+ LA+ L+++ A HGDK+Q R VL+ F+ G
Sbjct: 246 HLIK-QHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKNGEI 304
Query: 470 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRY 529
VL+ATD+AARG+DI + VV+N+D P DY+HRI +A T ++ +
Sbjct: 305 SVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEEYHH 364
Query: 530 ASDLIKL--LEGAKQQVP 545
+ K ++ ++Q+P
Sbjct: 365 FGVIEKKNKIKLVREQIP 382
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 132/387 (34%), Positives = 222/387 (57%)
Query: 180 GFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKR- 238
G PE+++ + G PIQ A++ RD++ A+TG+GKTL + +P + +
Sbjct: 122 GISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKF 181
Query: 239 -CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRG 296
++ P LVL+PTRELA Q++ E F +S+ + CLYGG P G Q+++++ G
Sbjct: 182 NAKHGRGKNPQCLVLAPTRELARQVEKE---FRESAPSLDTICLYGGTPIGQQMRELNYG 238
Query: 297 VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLM 356
+D+ V TPGR+ D+++ ++L++V ++VLDEAD+ML +GF + I++++PA+RQ++M
Sbjct: 239 IDVAVGTPGRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMM 298
Query: 357 YTATWPREVRKIAADLLVNPVQVN-IGNVDELAANKAITQHIEVLAPMDKHRRLEQILRS 415
++AT P +R + L NP+ ++ +G+ D+ A+ IT + + + +++
Sbjct: 299 FSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLAD-GITMYSIAADSYGRASIIGPLVKE 357
Query: 416 QEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT 475
G K IVF TK+ D+LA L + + A+HGD SQ++R+ L FR G +LVAT
Sbjct: 358 HGKGGKCIVFTQTKRDADRLAFGLAKSYKCEALHGDISQAQRERTLAGFRDGNFSILVAT 417
Query: 476 DVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIK 535
DVAARGLD+ ++ +V++Y+ P E +VHR A G QD A +I+
Sbjct: 418 DVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHG-QDQTRAVKMIE 476
Query: 536 LLEGAK-QQVPREL--RDMASRGGGMG 559
G++ ++P R AS G+G
Sbjct: 477 KEVGSRFNELPSIAVERGSASMFEGVG 503
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 589 (212.4 bits), Expect = 2.8e-57, P = 2.8e-57
Identities = 146/409 (35%), Positives = 214/409 (52%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E R+++ + V G+ +P P SF FP +L+ + G PTPIQ Q P L RD
Sbjct: 17 ERVRKKYHILVEGEGIPAPIKSFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRD 76
Query: 214 IVAIAKTGSGKTLGYLLPGFIH-LKRCRNDP---RLGPTVLVLSPTRELATQIQDEAVKF 269
++ IA TGSGKTL + LP + L++ + P R GP L++ P+ +A +++
Sbjct: 77 MIGIAFTGSGKTLVFTLPIIMFCLEQEKRLPFCKREGPYGLIICPSVNVAKHTHHGIIEY 136
Query: 270 -------GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVS 322
+ ++ C GG Q++ + +ATPGRL D+L + +SL+
Sbjct: 137 YCKLLEDEGAPQMRCALCIGGMSVKEQMEVVK------LATPGRLMDLLNKKMVSLDICR 190
Query: 323 YLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIG 382
YL LDEADRM+DMGFE IR I +RQTL+++AT P++++ A LV P+ +N+G
Sbjct: 191 YLALDEADRMIDMGFEEDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVG 250
Query: 383 NVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-R 441
AA+ + Q +E + K L + L+ P +++F K D + L +
Sbjct: 251 RAG--AASLDVIQEVEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKADVDAIHEYLLLK 306
Query: 442 QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVED 501
A AIHG K Q ER + F+ G+ VLVATDVA++GLD I+ VVNYD P +E+
Sbjct: 307 GVEAVAIHGGKDQEERTKAIEAFKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIEN 366
Query: 502 YVHRIXXXXXXXXXXVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPRELR 549
YVHRI +A TF D DL LL AKQ+VP L+
Sbjct: 367 YVHRIGRTGRSGKTGIATTFINKGCDESVLMDLKALLVEAKQKVPPVLQ 415
>UNIPROTKB|G5EHR3 [details] [associations]
symbol:MGCH7_ch7g509 "ATP-dependent RNA helicase DED1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CM000230
EMBL:CM001237 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 RefSeq:XP_003720990.1 ProteinModelPortal:G5EHR3
EnsemblFungi:MGG_02762T0 GeneID:2682767 KEGG:mgr:MGG_02762
Uniprot:G5EHR3
Length = 619
Score = 471 (170.9 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 115/339 (33%), Positives = 185/339 (54%)
Query: 221 GSGKTLGYLLPGFIHLKRCRNDP-RLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTC 279
G K L P + + P R P V+++ PTRELA Q +EA K S +
Sbjct: 186 GKAKKLAAPRPNPVEYNMDIHGPVRAEPLVVIVCPTRELAIQAFNEARKLCYRSMLRPGV 245
Query: 280 LYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI-SLNQVSYLVLDEADRMLDMGFE 338
+YGG Q++ I G DI+ ATPGRL ++ + +L +V Y+V+DEAD ML +E
Sbjct: 246 VYGGGNFMDQIRQIGLGCDILCATPGRLLHFMDKPELLNLQRVRYVVIDEADEMLTADWE 305
Query: 339 PQIRKIVKEVPARRQT--LMYTATWPREVRKIAAD-LLVNPVQVNIGNVDELAANKAITQ 395
++KI+ A ++ L+++AT+P+++R +A + L + VQ+ +G +N I Q
Sbjct: 306 EDMKKIMSAGGAAQEIKYLLFSATFPKKIRDLAREHLSEDHVQLRVGRAGSTHSN--IIQ 363
Query: 396 HIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ--FGAAAIHGDKS 453
+ APM+K R L ++ S P + I+F + K D+L L + ++H D++
Sbjct: 364 TVIETAPMNKKRALNDLINSMPP-QRTIIFVNNKWTADELDDYLYNECKLPCTSMHADRT 422
Query: 454 QSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPT----GVEDYVHRIXXX 509
Q ER+ L FRAG +P+LV T V ARG+D++++ VVNYD P+ G+E+Y HRI
Sbjct: 423 QREREDALRAFRAGTAPILVTTGVTARGIDVRNVAHVVNYDLPSMDHGGIEEYTHRIGRT 482
Query: 510 XXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPREL 548
+A +F+ D+D AS L++ + Q++P L
Sbjct: 483 GRIGNKGLATSFYTDRDEAIASVLVRTMLETNQEIPEFL 521
Score = 134 (52.2 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 25/60 (41%), Positives = 36/60 (60%)
Query: 172 PFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLP 231
P + F+ G P +L+ V G+ PTPIQA P + D++ IA+TGSGKT +L+P
Sbjct: 120 PALRFEDAGLHPAMLKNVDLCGYKVPTPIQAYCIPAIHKGHDVIGIAQTGSGKTAAFLIP 179
>ZFIN|ZDB-GENE-050208-665 [details] [associations]
symbol:ddx59 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 59" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-050208-665 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:BX649292
IPI:IPI00786758 Ensembl:ENSDART00000105600 Bgee:F1R8P9
Uniprot:F1R8P9
Length = 584
Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
Identities = 128/387 (33%), Positives = 215/387 (55%)
Query: 166 GDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKT 225
G EV P + F FP L R + AG+ +PTP+Q Q P+ L RD++A A TGSGKT
Sbjct: 162 GTEVCRPVIEFQHCRFPTVLERNLKAAGYEAPTPVQMQMVPVGLTGRDVIATADTGSGKT 221
Query: 226 LGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS-SRISCTCLYGGA 284
+ +LLP + + + P L+L+PTRELA QI+++A + + + L GG
Sbjct: 222 VAFLLPVVMRALQSESASPSCPACLILTPTRELAIQIEEQAKELMRGLPNMRTALLVGGM 281
Query: 285 PKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKI 344
P PQL + + IV+ TPGRL +IL+ + + L+ V +V+DEAD ML MGF+ Q+ I
Sbjct: 282 PLPPQLHRLKHNIKIVIGTPGRLLEILKQKAVQLDHVRTVVVDEADTMLKMGFQQQVLDI 341
Query: 345 VKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMD 404
+++VP QTL+ +AT P +++A L +PV + IG ++ AN + Q + +
Sbjct: 342 LEQVPEDHQTLLTSATIPTGTQQLAERLTHDPVTITIGQKNQPCAN--VRQIVLWVEEPS 399
Query: 405 KHRRLEQILRSQEPGSK-IIVFCSTKKMCDQLARNLTR--QFGAAAIHGDKSQSERDYVL 461
K ++L +IL ++ ++VF K D L + + AIH DK Q ER+ ++
Sbjct: 400 KKKKLFEILNDEKLYQPPVVVFVDCKLGADLLCEAVQKVMSLNTVAIHSDKMQWERNKIV 459
Query: 462 NQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTF 521
G+ V+++T + RGLD+ ++++V+N+D P+ +++YVH+I A TF
Sbjct: 460 KGLLEGQFDVVISTGILGRGLDLVNVKLVINFDMPSNMDEYVHQIGRAGRLGHRGTAITF 519
Query: 522 FGDQDSRYASDLIKLLEGAKQQVPREL 548
+ + R +++K ++ +P ++
Sbjct: 520 MNNNNKRLFLEMVKRVKPTGSILPPQI 546
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 131/362 (36%), Positives = 206/362 (56%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
M F G L++ V G+ SPTPIQ Q+ P L ++++A A+TG+GKT ++LP
Sbjct: 1 MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLP-L 59
Query: 234 IHLKRCRNDPRLGPT---VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 290
+H R + P++ P ++L+PTRELA Q++ ++ K ++ +YGG PQ
Sbjct: 60 LH--RFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQK 117
Query: 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350
K + GVD++VATPGRL D+ R I ++VS LVLDEADRMLDMGF I I++++P
Sbjct: 118 KRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPE 177
Query: 351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRR-- 408
+RQ L+++AT ++V+ +A + + +++ I N A TQ + L +DK R+
Sbjct: 178 QRQNLLFSATLSKQVKALAKTAIPDAIEIEISR-----KNAASTQIDQWLTTVDKDRKSA 232
Query: 409 -LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRA 466
L +++ ++ ++F TK +L L ++ A A H +SQ+ R+ +L F+A
Sbjct: 233 LLSHLIKENN-WAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKA 291
Query: 467 GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQD 526
G+ P LVAT V +RG+DI + V+NYD P +DY+HRI A +F D
Sbjct: 292 GKVPFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDD 351
Query: 527 SR 528
R
Sbjct: 352 FR 353
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 131/362 (36%), Positives = 206/362 (56%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
M F G L++ V G+ SPTPIQ Q+ P L ++++A A+TG+GKT ++LP
Sbjct: 1 MPFSQLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLP-L 59
Query: 234 IHLKRCRNDPRLGPT---VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQL 290
+H R + P++ P ++L+PTRELA Q++ ++ K ++ +YGG PQ
Sbjct: 60 LH--RFADAPKIRPKRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQK 117
Query: 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350
K + GVD++VATPGRL D+ R I ++VS LVLDEADRMLDMGF I I++++P
Sbjct: 118 KRLIEGVDLLVATPGRLLDMYTQRAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPE 177
Query: 351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRR-- 408
+RQ L+++AT ++V+ +A + + +++ I N A TQ + L +DK R+
Sbjct: 178 QRQNLLFSATLSKQVKALAKTAIPDAIEIEISR-----KNAASTQIDQWLTTVDKDRKSA 232
Query: 409 -LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRA 466
L +++ ++ ++F TK +L L ++ A A H +SQ+ R+ +L F+A
Sbjct: 233 LLSHLIKENN-WAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKA 291
Query: 467 GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQD 526
G+ P LVAT V +RG+DI + V+NYD P +DY+HRI A +F D
Sbjct: 292 GKVPFLVATGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDD 351
Query: 527 SR 528
R
Sbjct: 352 FR 353
>MGI|MGI:1915247 [details] [associations]
symbol:Ddx59 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 59"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915247
GO:GO:0005524 GO:GO:0046872 GO:GO:0003723 GO:GO:0005622
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529
Pfam:PF04438 PROSITE:PS51083 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
GeneTree:ENSGT00610000086076 CTD:83479 HOGENOM:HOG000006599
HOVERGEN:HBG106120 OMA:VTRPIID EMBL:AK004833 EMBL:AK013179
EMBL:AK076462 EMBL:BC023840 IPI:IPI00119928 IPI:IPI00226119
RefSeq:NP_080776.1 UniGene:Mm.385462 UniGene:Mm.486546
ProteinModelPortal:Q9DBN9 SMR:Q9DBN9 PhosphoSite:Q9DBN9
PRIDE:Q9DBN9 Ensembl:ENSMUST00000027655 GeneID:67997 KEGG:mmu:67997
UCSC:uc007cut.1 UCSC:uc007cuu.2 InParanoid:Q9DBN9 OrthoDB:EOG4K9BBZ
ChiTaRS:DDX59 NextBio:326168 Bgee:Q9DBN9 CleanEx:MM_DDX59
Genevestigator:Q9DBN9 Uniprot:Q9DBN9
Length = 619
Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
Identities = 136/399 (34%), Positives = 224/399 (56%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E +++ ++V G +V P + F+ GFP L + + +G+ PTPIQ Q P+ L RD
Sbjct: 183 ETLKQQLGISVQGQDVARPIIDFEHCGFPETLNQNLKKSGYEVPTPIQMQMIPVGLLGRD 242
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS- 272
I+A A TGSGKT +LLP I R ++ + P+ L+L+PTRELA QI+ +A +
Sbjct: 243 ILASADTGSGKTAAFLLPVII---RAFSEDKT-PSALILTPTRELAIQIERQAKELMSGL 298
Query: 273 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332
R+ L GG P PQL + + V +++ATPGRL DI++ +SL+ + +V+DEAD M
Sbjct: 299 PRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVSLSGIKIVVVDEADTM 358
Query: 333 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKA 392
L MGF+ Q+ +++ P QT++ +AT P + ++ LL NPV++ G+ + A+
Sbjct: 359 LKMGFQQQVLDVLEHTPGDCQTILVSATIPDSIEQLTDQLLHNPVRIITGDKNLPCAS-- 416
Query: 393 ITQHIEVLAPMDKHRRLEQILRSQEPGSK-IIVFCSTKKMCDQLARNLTRQFG--AAAIH 449
+ Q I + K ++L +IL Q+ ++VF K D L+ + + G + +IH
Sbjct: 417 VRQIILWVEDPAKKKKLFEILNDQKLFKPPVLVFVDCKLGADLLSEAVQKITGLNSTSIH 476
Query: 450 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXX 509
+KSQ ER +L G V+V+T V RGLD+ ++++VVN+D P+ +++YVH++
Sbjct: 477 SEKSQVERRDILKGLLEGDYEVVVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRV 536
Query: 510 XXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPREL 548
A TF + R D+ K ++ +P +L
Sbjct: 537 GRLGQNGTAITFINNNSKRLFWDVAKRVKPTGSILPPQL 575
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 142/359 (39%), Positives = 202/359 (56%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+F + +LR + + G++ TPIQA S P+ L +D++A AKTGSGKT + G
Sbjct: 5 AFSSLRLKAPMLRNLASLGYAEMTPIQAHSLPLILAGKDVIARAKTGSGKTAAF---GIG 61
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK-SSRISCTCLYGGAPKGPQLKDI 293
L R + LVL PTRELA Q+ E + + + I + GG P GPQL +
Sbjct: 62 LLSRL-DALSFRVQALVLCPTRELADQVGKELRRLARFTDNIKILTICGGVPFGPQLGSL 120
Query: 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
+ G +V+ TPGRL D L + L+ + LVLDEADRMLDMGF+ I ++ P +RQ
Sbjct: 121 EHGAHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRMLDMGFQDDISALIAAAPPKRQ 180
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE--- 410
TL+++AT+P + ++A + PV+V+ VDE+ AI Q V +D +R+E
Sbjct: 181 TLLFSATYPDSIAAMSAGVQREPVEVS---VDEVHGEGAIEQ---VFYEVDSGQRIEAVE 234
Query: 411 QILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRS 469
+IL P S +I FC+TK C ++A L R + A AIHGD Q ERD VL +F +
Sbjct: 235 RILGHYRPESALI-FCNTKLECQEVANALAVRGYAALAIHGDLDQRERDRVLVRFANRSA 293
Query: 470 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSR 528
VLVATDVAARGLDIK++ V+NY+ E + HRI +A + ++SR
Sbjct: 294 SVLVATDVAARGLDIKELSAVINYELTRNPEVHTHRIGRTGRAGERGLAVSLVTPRESR 352
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 139/368 (37%), Positives = 207/368 (56%)
Query: 183 PELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRND 242
P +LR + + G+ SPT IQA + P + D+V +A+TG+GKT + +P L +
Sbjct: 22 PRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIP---MLSKIDIT 78
Query: 243 PRLGPTVLVLSPTRELATQIQDEAVKFGKS-SRISCTCLYGGAPKGPQLKDIDRGVDIVV 301
++ P LVL PTRELA Q+ + ++G S+++ +YGG+ QL + RG +VV
Sbjct: 79 SKV-PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVV 137
Query: 302 ATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATW 361
TPGR+ D LE + L++V +LVLDEAD ML MGF + +I+ E P +Q +++AT
Sbjct: 138 GTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATM 197
Query: 362 PREVRKIAADLLVNPVQVNIGNVDELAANKAITQ-HIEVLAPMDKHRRLEQILRSQEPGS 420
P +RK++A L +P +V +A N I+Q +I+V MD R+ ++ EP
Sbjct: 198 PPAIRKLSAKYLHDPFEVTCKAKTAVAEN--ISQSYIQVARKMDALTRVLEV----EPFE 251
Query: 421 KIIVFCSTKKMCDQLARNL-TRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAA 479
+IVF TK+ +++A L R F AAAI GD Q++R+ + R G +LVATDVAA
Sbjct: 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311
Query: 480 RGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEG 539
RGLD++ I V+NYD P E YVHRI A F ++ L+K +E
Sbjct: 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH----LLKAIEK 367
Query: 540 AKQQVPRE 547
A +Q E
Sbjct: 368 ATRQTLTE 375
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
Identities = 131/349 (37%), Positives = 195/349 (55%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
++F +L++ ++ GF TPIQAQ+ P+ L ++D++ A+TG+GKT + +P
Sbjct: 3 ITFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIP-L 61
Query: 234 IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293
+ K P + +V++PTRELA Q+ +E K G+ R +YGG G Q++ +
Sbjct: 62 VE-KINPESPNI--QAIVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRAL 118
Query: 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
+ +I+V TPGRL D + R I LN V+ +V+DEAD ML+MGF I I+ VP+ Q
Sbjct: 119 KKNPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPSEHQ 178
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL 413
TL+++AT P +++IA + P V + E+ + ++EV K L ++L
Sbjct: 179 TLLFSATMPAPIKRIAERFMTEPEHVKV-KAKEMTVSNIQQFYLEV-QERKKFDTLTRLL 236
Query: 414 RSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472
Q P IVF TK+ D+LA L R + A IHGD +Q++R L +F+ G VL
Sbjct: 237 DIQSP-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIEVL 295
Query: 473 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTF 521
VATDVAARGLDI + V N+D P E YVHRI +A TF
Sbjct: 296 VATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTF 344
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 132/338 (39%), Positives = 198/338 (58%)
Query: 171 PPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLL 230
P ++F + G P LL V + GF+S T IQA + P L +D++ A+TG+GKT + L
Sbjct: 12 PEAVAFASLGLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGL 71
Query: 231 PGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSR-ISCTCLYGGAPKGPQ 289
P + P+L +VL+PTRELA Q+ + FGK + + LYGG GPQ
Sbjct: 72 PALAKIDTSIKKPQL----MVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQ 127
Query: 290 LKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVP 349
+ ++RG +VV TPGRL D L + + L+++ VLDEAD ML+MGF I+ I+ +P
Sbjct: 128 FQQLERGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEMLNMGFLEDIQWILDHIP 187
Query: 350 ARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRL 409
Q +++AT P +RKIA L +P + + V + AN ITQ+ ++ + K L
Sbjct: 188 KTAQMCLFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKAN--ITQYAWKVSGITKMTAL 245
Query: 410 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGR 468
E+I E + +I+F T+ +A L R + A A++GD +Q++R+ ++Q ++G+
Sbjct: 246 ERIAEVVEYDA-MIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGK 304
Query: 469 SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
S +LVATDV ARGLDI I +V+NYD P E YVHRI
Sbjct: 305 SSILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRI 342
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 138/399 (34%), Positives = 218/399 (54%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E +++ + V G EV P + F+ P L + +G+ PTPIQ Q P+ L RD
Sbjct: 183 ENLKQQLGILVQGQEVTRPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRD 242
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS- 272
I+A A TGSGKT +LLP + R + + P+ L+L+PTRELA QI+ +A +
Sbjct: 243 ILASADTGSGKTAAFLLPVIM---RALFESKT-PSALILTPTRELAIQIERQAKELMSGL 298
Query: 273 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332
R+ L GG P PQL + + V +++ATPGRL DI++ + L V +V+DEAD M
Sbjct: 299 PRMKTVLLVGGLPLPPQLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIVVVDEADTM 358
Query: 333 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKA 392
L MGF+ Q+ I++ +P QT++ +AT P + ++A+ LL NPV++ G + AN
Sbjct: 359 LKMGFQQQVLDILENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCAN-- 416
Query: 393 ITQHIEVLAPMDKHRRLEQILRSQEPGSK-IIVFCSTKKMCDQLARNLTRQFG--AAAIH 449
+ Q I + K ++L +IL ++ ++VF K D L+ + + G + +IH
Sbjct: 417 VRQIILWVEDPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIH 476
Query: 450 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXX 509
+KSQ ER +L G V+V+T V RGLD+ +R+VVN+D P+ +++YVH+I
Sbjct: 477 SEKSQIERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRV 536
Query: 510 XXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPREL 548
A TF + R D+ K ++ +P +L
Sbjct: 537 GRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSILPPQL 575
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 132/369 (35%), Positives = 202/369 (54%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+F G LL + + PTPIQA++ P RD++A A TGSGKT + LP
Sbjct: 9 TFTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQ 68
Query: 235 HLKR-----CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK--SSRISCTCLYGGAPKG 287
L+ +N T LVL PTRELA Q+ D + + I ++GG
Sbjct: 69 KLREDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVN 128
Query: 288 PQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE 347
Q+ + GVDI+VATPGRL D++ I L++V LVLDEADRML +GF ++ ++
Sbjct: 129 IQMLALRGGVDILVATPGRLLDLISSNAIKLDKVKTLVLDEADRMLSLGFTEELTALLAL 188
Query: 348 VPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 407
P ++QTL+++AT+P +V + +LL NP+++ + + D + Q + + +K
Sbjct: 189 TPKKKQTLLFSATFPEQVTTLTQELLNNPIEIQLQSADA----STLVQRVFTVNKGEKTA 244
Query: 408 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRA 466
L +++ QE + ++F + K C+ LA L ++ AA HGDK QSER VL+ F+A
Sbjct: 245 VLAHLIQ-QEQWRQALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFKA 303
Query: 467 GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQD 526
G VL+ATD+AARGLDI+ + VV+N++ P DY+HRI +A + +D
Sbjct: 304 GDIEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHED 363
Query: 527 SRYASDLIK 535
+ S + K
Sbjct: 364 YHHFSVIEK 372
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
Identities = 137/399 (34%), Positives = 218/399 (54%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E R + + V G VP P + F GFP L + AG+ PTPIQ Q P+ L RD
Sbjct: 171 ENLRGQLGIVVEGRGVPRPIIDFGHCGFPETLNFNLKTAGYEVPTPIQMQMIPVGLLGRD 230
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKF-GKS 272
++A A TGSGKT +LLP + R + P+ LVL+PTRELA QI+ +A + G
Sbjct: 231 LLASADTGSGKTAAFLLPV---ITRALVQSK-APSALVLTPTRELAIQIERQAKELMGGL 286
Query: 273 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332
R+ L GG P PQL + + V +++ATPGRL DI++ + L + +V+DEAD M
Sbjct: 287 PRMRTALLVGGLPAPPQLHRLRQRVQVIIATPGRLLDIMKQSSVDLGNIKIVVVDEADTM 346
Query: 333 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKA 392
L MGF+ Q+ +++ VP QT++ +AT P + ++A+ LL +PV+V G + L +
Sbjct: 347 LKMGFQEQVLDVLENVPQDCQTILVSATIPTRIEQLASRLLHDPVRVLAGEKN-LPC-PS 404
Query: 393 ITQHIEVLAPMDKHRRLEQILRSQEPGSK-IIVFCSTKKMCDQLARNLTRQFG--AAAIH 449
+ Q + + K ++L +IL ++ ++VF K D L+ + + G + ++H
Sbjct: 405 VRQIVLWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVEKITGLKSTSMH 464
Query: 450 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXX 509
+KSQ ER +L G V+V+T V RGLD+ +++VVN+D P+ +++YVH++
Sbjct: 465 SEKSQIERKTILEGLLEGDYDVVVSTGVLGRGLDLISVKLVVNFDMPSSMDEYVHQVGRV 524
Query: 510 XXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPREL 548
A TF + R D+ K ++ +P +L
Sbjct: 525 GRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSLLPPQL 563
>UNIPROTKB|E2R4Z9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 EMBL:AAEX03005031
Ensembl:ENSCAFT00000017691 Uniprot:E2R4Z9
Length = 569
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 130/357 (36%), Positives = 208/357 (58%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E +R+ + V G +V P + F+ GFP L + +G+ PTPIQ Q P+ L RD
Sbjct: 184 ENLKRQLGIVVQGQDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRD 243
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS- 272
++A A TGSGKT +LLP I C + P+ L+L+PTRELA QI+++A +
Sbjct: 244 VLASADTGSGKTAAFLLP-VITRALCESKT---PSALILTPTRELAIQIENQAKELMSGL 299
Query: 273 SRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRM 332
R+ L GG P PQL + + V +++ATPGRL DI++ + L + +V+DEAD M
Sbjct: 300 PRMKTVLLVGGLPLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVELCGIKIVVVDEADTM 359
Query: 333 LDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKA 392
L MGF+ Q+ I++ VP QT++ +AT P + ++A+ LL NPV++ G + L + +
Sbjct: 360 LKMGFQQQVLDILEHVPNDSQTILVSATIPTSIEQLASQLLHNPVRIITGEKN-LPCS-S 417
Query: 393 ITQHIEVLAPMDKHRRLEQILRSQEPGSK-IIVFCSTKKMCDQLARNLTRQFG--AAAIH 449
+ Q I + K ++L +IL ++ ++VF K D L+ + + G + +IH
Sbjct: 418 VRQIILWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIH 477
Query: 450 GDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
+KSQ+ER +L G V+V+T V RGLD+ +R+VVN+D P+ +++YVH++
Sbjct: 478 SEKSQTERKNILKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQV 534
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 133/348 (38%), Positives = 201/348 (57%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
+T + F +F P+LL + + F+ PTPIQ+++ P AL+ +DI+ +A+TG
Sbjct: 111 ITTIDPDAELKFKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTG 170
Query: 222 SGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLY 281
SGKT + +P L + P LVL+PTREL QI+D G S + +C+
Sbjct: 171 SGKTAAFAIPILQSLWHAQQ-PYFA---LVLAPTRELTFQIKDTFDALGSSMGLRSSCIV 226
Query: 282 GGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR-ISLNQVSYLVLDEADRMLDMGFEPQ 340
GG Q +D+ R ++VATPGR+ D LE + SL + YLV+DEADR+LDM F P
Sbjct: 227 GGMDMMDQARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLKYLVMDEADRLLDMDFGPA 286
Query: 341 IRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVL 400
+ KI+K +P +R T +++AT ++ K+ L NPV+V + + + A N + Q + ++
Sbjct: 287 LDKILKVIPIKRTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADN--LVQSMMLV 344
Query: 401 APMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR--QFGAAAIHGDKSQSERD 458
K+ L +L ++ G IIVF T + A L R F A +HG SQS+R
Sbjct: 345 NDGYKNTILIHLL-NEFMGKSIIVFTRTVAHAQRTAL-LARILGFNAVPLHGQLSQSQRL 402
Query: 459 YVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
LN+F++ ++ +LVATDVAARGLDI + VV+NYD PT + Y+HR+
Sbjct: 403 GSLNKFKSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRV 450
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 132/348 (37%), Positives = 191/348 (54%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+F G E+++ + GF TPIQA++ P++LQ++D++ A+TG+GKT + +P +
Sbjct: 3 TFQELGLSQEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIP-IV 61
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
+N LV++PTRELA Q+ +E K G R+ +YGG Q++ +
Sbjct: 62 EKVNVKNS---AVQALVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIERQIRALK 118
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
+ ++V TPGR+ D + + L V +VLDEAD ML+MGF I I+ VPA RQT
Sbjct: 119 KHPHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLNMGFIEDIEAILSHVPAERQT 178
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILR 414
L+++AT P +R+IA + P V + E+ ++EV K L ++L
Sbjct: 179 LLFSATMPDPIRRIAERFMNEPELVKV-KAKEMTVPNIQQYYLEV-HEKKKFDILTRLLD 236
Query: 415 SQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLV 473
Q P IVF TK+ D+LA L R + A IHGD SQ++R VL +F+ G +LV
Sbjct: 237 IQAP-ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGAIEILV 295
Query: 474 ATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTF 521
ATDVAARGLDI + V N+D P E YVHRI VA TF
Sbjct: 296 ATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTF 343
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 134/365 (36%), Positives = 201/365 (55%)
Query: 184 ELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDP 243
+L + + GF TPIQAQ+ P+ L ++D++ A+TG+GKT + +P + K P
Sbjct: 13 DLTKAIKRMGFEEATPIQAQTIPLGLANKDVIGQAQTGTGKTAAFGIP-LVE-KINPESP 70
Query: 244 RLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVAT 303
+ +V++PTRELA Q+ +E K G+ R +YGG G Q++ + + I+V T
Sbjct: 71 NI--QAIVIAPTRELAIQVSEELYKIGQDKRARVLPIYGGQDIGRQIRALKKNPHIIVGT 128
Query: 304 PGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPR 363
PGRL D + R + L V+ +VLDEAD ML+MGF I I+ VPA QTL+++AT P
Sbjct: 129 PGRLLDHINRRTMRLQTVNTVVLDEADEMLNMGFIEDIESILSNVPAEHQTLLFSATMPA 188
Query: 364 EVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKII 423
+++IA + NP V + E+ + ++EV K L ++L Q P I
Sbjct: 189 PIKRIAERFMTNPEHVKV-KAKEMTVSNIQQFYLEV-HERKKFDTLTRLLDIQSP-ELAI 245
Query: 424 VFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGL 482
VF TK+ D+L L R + A IHGD +Q++R L +F+ G VLVATDVAARGL
Sbjct: 246 VFGRTKRRVDELTEALNLRGYTAEGIHGDLTQAKRMVALRKFKQGAIEVLVATDVAARGL 305
Query: 483 DIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGA-K 541
DI + V N+D P E YVHRI +A TF ++ D+++ +E K
Sbjct: 306 DISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREK----DMLRAIEQTTK 361
Query: 542 QQVPR 546
+++ R
Sbjct: 362 RKMDR 366
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
Identities = 130/391 (33%), Positives = 215/391 (54%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
+ + G +VP P + F+ GFP L + N+G+ PTPIQ Q P+ L RDIVA A TG
Sbjct: 197 IAIQGQQVPRPIIEFEHCGFPETLNSNLKNSGYEVPTPIQMQMIPVGLLGRDIVASADTG 256
Query: 222 SGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS-SRISCTCL 280
SGKT +LLP + + N+ P+ L+L+PTRELA QI+ +A + + L
Sbjct: 257 SGKTAAFLLPVIM---KVLNETET-PSALILAPTRELAIQIERQAKELMAGLPNMRTVLL 312
Query: 281 YGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQ 340
GG P PQL + + V +++ATPGRL +IL + L+ + +V+DE D ML MGF+ Q
Sbjct: 313 VGGLPLPPQLHRLKQSVKVIIATPGRLLEILRQSSVQLHGIKIVVVDEVDTMLKMGFQQQ 372
Query: 341 IRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVL 400
+ I++++ QT++ +AT P + +A LL N V++ IG + +N + Q I +
Sbjct: 373 VLDILEDISHDHQTILVSATIPVGIEHLANQLLHNFVRITIGEKNLPCSN--VRQIILWV 430
Query: 401 APMDKHRRLEQILRSQEPGSK-IIVFCSTKKMCDQLARNLTRQFG--AAAIHGDKSQSER 457
K ++L +IL ++ ++VF K D L+ + + G ++H +KSQ ER
Sbjct: 431 EEPSKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSDAVHKITGLQCTSMHSEKSQVER 490
Query: 458 DYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXV 517
+L + V+V+T V RGLD+ ++++VVN+D P+ +++YVH++
Sbjct: 491 TAILQGLLQEKYEVIVSTGVLGRGLDLVNVKLVVNFDMPSSMDEYVHQVGRAGRLGHSGT 550
Query: 518 AYTFFGDQDSRYASDLIKLLEGAKQQVPREL 548
A TF + + D++K ++ +P +L
Sbjct: 551 AITFINNNSKKLFWDVVKRVKPTGTILPPQL 581
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 128/339 (37%), Positives = 196/339 (57%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
MSF +L + + G++ PT IQ ++ P+ L +DI+A A+TG+GKT ++LP
Sbjct: 1 MSFSTLKLSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLL 60
Query: 234 IHLKRCRNDP--RLGPT---VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGP 288
L + +L L+L PTRELA Q++ ++ K IS +YGG
Sbjct: 61 EQLNSQYKETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQE 120
Query: 289 QLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEV 348
Q + + GVDI+VATPGRL D+ R + +++ LVLDEADRMLDMGF I KI++ +
Sbjct: 121 QKQRLIWGVDILVATPGRLLDMTHQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERL 180
Query: 349 PARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRR 408
P RQ L+++AT EVR +A + PV+++IG D+ A+ I Q + + +K
Sbjct: 181 PEHRQNLLFSATMSEEVRGLAKRTIHKPVEISIG-ADK-ASKPKIEQWLVTVDKANKSAL 238
Query: 409 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAG 467
L I+ +Q + ++F TK +L L ++ A +IH ++Q R+ +LN F++G
Sbjct: 239 LSHIITTQN-WQQALIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFKSG 297
Query: 468 RSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
+ LVAT +AARGLDI ++ V+NYD P V+DY+HRI
Sbjct: 298 KIKFLVATAIAARGLDIGELSRVINYDLPAQVDDYIHRI 336
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 139/384 (36%), Positives = 218/384 (56%)
Query: 173 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPG 232
F SF PEL++ N +S PTPIQ+++ P AL+ DI+ +A+TGSGKT + +P
Sbjct: 80 FESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIP- 138
Query: 233 FIHLKRCRNDPRLGPT-VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 291
L R +D P +L+PTRELA QI++ G + TC+ GG Q +
Sbjct: 139 --ILNRLWHDQE--PYYACILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQAR 194
Query: 292 DIDRGVDIVVATPGRLNDILEMRR-ISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350
D+ R I++ATPGRL D LE + SL ++ +LV+DEADR+LDM F P + +I+K +P
Sbjct: 195 DLMRKPHIIIATPGRLMDHLENTKGFSLRKLKFLVMDEADRLLDMEFGPVLDRILKIIPT 254
Query: 351 R-RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRL 409
+ R T +++AT ++ K+ L NPV+ + N + + Q + V+ K+ L
Sbjct: 255 QERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTV--DTLVQTLMVVPGGLKNTYL 312
Query: 410 EQILRSQEPGSKIIVFCSTKKMCDQLAR--NLTRQFGAAAIHGDKSQSERDYVLNQFRAG 467
+L ++ G +I+F TK ++L+ NL +F A A+HGD +Q++R L+ F+AG
Sbjct: 313 IYLL-NEFIGKTMIIFTRTKANAERLSGLCNLL-EFSATALHGDLNQNQRMGSLDLFKAG 370
Query: 468 RSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDS 527
+ +LVATDVAARGLDI + +VVNYD P + Y+HR+ + + S
Sbjct: 371 KRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLV----S 426
Query: 528 RYASDLI-KLLEGAKQQVPRELRD 550
+Y +LI ++ E +++P+E D
Sbjct: 427 QYDLELILRIEEVLGKKLPKESVD 450
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 128/353 (36%), Positives = 202/353 (57%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
MSF G L++ V G+ PT IQ Q+ P+ LQ RD++A A+TG+GKT ++LP
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 234 IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293
L++ + + L+L PTRELA Q+ ++ ++GK + + ++GG + Q + +
Sbjct: 61 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
Query: 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
GVD++VATPGRL D+ R + ++ +VLDEADRMLDMGF I KI+ +P+ Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI-EVLAPMDKHRR---L 409
L+++AT R+VR++A + +P +++I AAN+A +I + L +DK + L
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISI------AANQASKSNISQWLITVDKDTKSALL 234
Query: 410 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGR 468
++ Q+ + ++F TK +L L ++ A A H +SQ+ R +L F++G+
Sbjct: 235 SHLINEQQ-WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGK 293
Query: 469 SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTF 521
LVAT VAARG+DI + VVNYD P ++YVHRI A +F
Sbjct: 294 IKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISF 346
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 560 (202.2 bits), Expect = 3.4e-54, P = 3.4e-54
Identities = 128/353 (36%), Positives = 202/353 (57%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
MSF G L++ V G+ PT IQ Q+ P+ LQ RD++A A+TG+GKT ++LP
Sbjct: 1 MSFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPIL 60
Query: 234 IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293
L++ + + L+L PTRELA Q+ ++ ++GK + + ++GG + Q + +
Sbjct: 61 EKLRQGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
Query: 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
GVD++VATPGRL D+ R + ++ +VLDEADRMLDMGF I KI+ +P+ Q
Sbjct: 121 IDGVDVLVATPGRLMDLYGQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPSEVQ 180
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI-EVLAPMDKHRR---L 409
L+++AT R+VR++A + +P +++I AAN+A +I + L +DK + L
Sbjct: 181 FLLFSATLSRKVRELAKTAVRDPHEISI------AANQASKSNISQWLITVDKDTKSALL 234
Query: 410 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGR 468
++ Q+ + ++F TK +L L ++ A A H +SQ+ R +L F++G+
Sbjct: 235 SHLINEQQ-WDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGK 293
Query: 469 SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTF 521
LVAT VAARG+DI + VVNYD P ++YVHRI A +F
Sbjct: 294 IKYLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISF 346
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 138/383 (36%), Positives = 203/383 (53%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+F G LL+ V + GF TPIQA++ P ALQ +DI+ A+TG+GKT + LP +
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP-LL 61
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
+ G +V++PTRELA Q+ +E K GK R+ +YGG Q++ +
Sbjct: 62 DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
+ I+V TPGR+ D + + + L V +VLDEAD ML+MGF I I+ +VP QT
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQT 178
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ-HIEVLAPMDKHRRLEQIL 413
L+++AT P +R+IA + P + + + N I Q ++EV K L ++L
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN--IQQFYLEV-QEKKKFDVLTRLL 235
Query: 414 RSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472
Q P IVF TK+ D+L+ L R + A IHGD +Q++R VL +F+ G VL
Sbjct: 236 DIQSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294
Query: 473 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASD 532
VATDVAARGLDI + V N+D P E YVHRI +A F ++S +
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
Query: 533 LIKLLEGAKQQVPRELRDMASRG 555
+ + + ++ D A G
Sbjct: 355 IERTTKRKMDRMDAPTLDEALEG 377
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 138/383 (36%), Positives = 203/383 (53%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+F G LL+ V + GF TPIQA++ P ALQ +DI+ A+TG+GKT + LP +
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP-LL 61
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
+ G +V++PTRELA Q+ +E K GK R+ +YGG Q++ +
Sbjct: 62 DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
+ I+V TPGR+ D + + + L V +VLDEAD ML+MGF I I+ +VP QT
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQT 178
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ-HIEVLAPMDKHRRLEQIL 413
L+++AT P +R+IA + P + + + N I Q ++EV K L ++L
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN--IQQFYLEV-QEKKKFDVLTRLL 235
Query: 414 RSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472
Q P IVF TK+ D+L+ L R + A IHGD +Q++R VL +F+ G VL
Sbjct: 236 DIQSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294
Query: 473 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASD 532
VATDVAARGLDI + V N+D P E YVHRI +A F ++S +
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
Query: 533 LIKLLEGAKQQVPRELRDMASRG 555
+ + + ++ D A G
Sbjct: 355 IERTTKRKMDRMDAPTLDEALEG 377
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 138/383 (36%), Positives = 203/383 (53%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+F G LL+ V + GF TPIQA++ P ALQ +DI+ A+TG+GKT + LP +
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP-LL 61
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
+ G +V++PTRELA Q+ +E K GK R+ +YGG Q++ +
Sbjct: 62 DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
+ I+V TPGR+ D + + + L V +VLDEAD ML+MGF I I+ +VP QT
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQT 178
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ-HIEVLAPMDKHRRLEQIL 413
L+++AT P +R+IA + P + + + N I Q ++EV K L ++L
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN--IQQFYLEV-QEKKKFDVLTRLL 235
Query: 414 RSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472
Q P IVF TK+ D+L+ L R + A IHGD +Q++R VL +F+ G VL
Sbjct: 236 DIQSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294
Query: 473 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASD 532
VATDVAARGLDI + V N+D P E YVHRI +A F ++S +
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
Query: 533 LIKLLEGAKQQVPRELRDMASRG 555
+ + + ++ D A G
Sbjct: 355 IERTTKRKMDRMDAPTLDEALEG 377
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 138/383 (36%), Positives = 203/383 (53%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+F G LL+ V + GF TPIQA++ P ALQ +DI+ A+TG+GKT + LP +
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP-LL 61
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
+ G +V++PTRELA Q+ +E K GK R+ +YGG Q++ +
Sbjct: 62 DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
+ I+V TPGR+ D + + + L V +VLDEAD ML+MGF I I+ +VP QT
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQT 178
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ-HIEVLAPMDKHRRLEQIL 413
L+++AT P +R+IA + P + + + N I Q ++EV K L ++L
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN--IQQFYLEV-QEKKKFDVLTRLL 235
Query: 414 RSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472
Q P IVF TK+ D+L+ L R + A IHGD +Q++R VL +F+ G VL
Sbjct: 236 DIQSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294
Query: 473 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASD 532
VATDVAARGLDI + V N+D P E YVHRI +A F ++S +
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
Query: 533 LIKLLEGAKQQVPRELRDMASRG 555
+ + + ++ D A G
Sbjct: 355 IERTTKRKMDRMDAPTLDEALEG 377
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 138/383 (36%), Positives = 203/383 (53%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+F G LL+ V + GF TPIQA++ P ALQ +DI+ A+TG+GKT + LP +
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP-LL 61
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
+ G +V++PTRELA Q+ +E K GK R+ +YGG Q++ +
Sbjct: 62 DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
+ I+V TPGR+ D + + + L V +VLDEAD ML+MGF I I+ +VP QT
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQT 178
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ-HIEVLAPMDKHRRLEQIL 413
L+++AT P +R+IA + P + + + N I Q ++EV K L ++L
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN--IQQFYLEV-QEKKKFDVLTRLL 235
Query: 414 RSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472
Q P IVF TK+ D+L+ L R + A IHGD +Q++R VL +F+ G VL
Sbjct: 236 DIQSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294
Query: 473 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASD 532
VATDVAARGLDI + V N+D P E YVHRI +A F ++S +
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
Query: 533 LIKLLEGAKQQVPRELRDMASRG 555
+ + + ++ D A G
Sbjct: 355 IERTTKRKMDRMDAPTLDEALEG 377
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 138/383 (36%), Positives = 203/383 (53%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+F G LL+ V + GF TPIQA++ P ALQ +DI+ A+TG+GKT + LP +
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP-LL 61
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
+ G +V++PTRELA Q+ +E K GK R+ +YGG Q++ +
Sbjct: 62 DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
+ I+V TPGR+ D + + + L V +VLDEAD ML+MGF I I+ +VP QT
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQT 178
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ-HIEVLAPMDKHRRLEQIL 413
L+++AT P +R+IA + P + + + N I Q ++EV K L ++L
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN--IQQFYLEV-QEKKKFDVLTRLL 235
Query: 414 RSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472
Q P IVF TK+ D+L+ L R + A IHGD +Q++R VL +F+ G VL
Sbjct: 236 DIQSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294
Query: 473 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASD 532
VATDVAARGLDI + V N+D P E YVHRI +A F ++S +
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
Query: 533 LIKLLEGAKQQVPRELRDMASRG 555
+ + + ++ D A G
Sbjct: 355 IERTTKRKMDRMDAPTLDEALEG 377
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 138/383 (36%), Positives = 203/383 (53%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+F G LL+ V + GF TPIQA++ P ALQ +DI+ A+TG+GKT + LP +
Sbjct: 3 TFRELGLSDSLLQSVESMGFEEATPIQAETIPHALQGKDIIGQAQTGTGKTAAFGLP-LL 61
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
+ G +V++PTRELA Q+ +E K GK R+ +YGG Q++ +
Sbjct: 62 DKVDTHKESVQG---IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALK 118
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
+ I+V TPGR+ D + + + L V +VLDEAD ML+MGF I I+ +VP QT
Sbjct: 119 KHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQT 178
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQ-HIEVLAPMDKHRRLEQIL 413
L+++AT P +R+IA + P + + + N I Q ++EV K L ++L
Sbjct: 179 LLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPN--IQQFYLEV-QEKKKFDVLTRLL 235
Query: 414 RSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472
Q P IVF TK+ D+L+ L R + A IHGD +Q++R VL +F+ G VL
Sbjct: 236 DIQSP-ELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEGSIEVL 294
Query: 473 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASD 532
VATDVAARGLDI + V N+D P E YVHRI +A F ++S +
Sbjct: 295 VATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGIAMLFVTPRESGQLKN 354
Query: 533 LIKLLEGAKQQVPRELRDMASRG 555
+ + + ++ D A G
Sbjct: 355 IERTTKRKMDRMDAPTLDEALEG 377
>TIGR_CMR|GSU_0522 [details] [associations]
symbol:GSU_0522 "ATP-dependent RNA helicase RhlB"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006401
"RNA catabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K03732
RefSeq:NP_951580.1 ProteinModelPortal:Q74FT4 GeneID:2685920
KEGG:gsu:GSU0522 PATRIC:22023799 OMA:LAYEFMN ProtClustDB:CLSK827899
BioCyc:GSUL243231:GH27-482-MONOMER Uniprot:Q74FT4
Length = 443
Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
Identities = 131/378 (34%), Positives = 207/378 (54%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
M F P ++++ V +AGFS TPIQ ++ P++L +D+ A+TG+GKT +L+ F
Sbjct: 1 MKFADLNLPEQVMQGVADAGFSDCTPIQEKTLPLSLGGKDVAGQAQTGTGKTAAFLISLF 60
Query: 234 IHLKRC-RNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKD 292
L R R R P ++L+PTREL QI+ +A G + +YGG Q
Sbjct: 61 TKLLRSGRGGERRHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNA 120
Query: 293 IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA-- 350
+ G D+VV TPGRL D L+ + SL ++ LV+DEADRM DMGF +R I++ +P
Sbjct: 121 LKEGADVVVGTPGRLIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLRFILRRLPPYD 180
Query: 351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLE 410
+RQ LM++AT + V ++A + + P +V + +++ A + + Q + + +K L
Sbjct: 181 KRQNLMFSATLNQRVMELAYEFMNVPEKVAV-TPEQMTAER-VEQVLYHVGRKEKFPLLL 238
Query: 411 QILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSERDYVLNQFRAGRS 469
+LR +E + ++F +TK+ + L L F I GD Q +R +L F++G+
Sbjct: 239 GLLR-KEGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKSGKL 297
Query: 470 PVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRY 529
P+++ATDVA+RGL I + V+NYD P EDYVHRI A + D+D +
Sbjct: 298 PIMIATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISM-ADEDGAF 356
Query: 530 ASDLIKLLEGAKQQVPRE 547
+ I E K ++P E
Sbjct: 357 HLEAIH--EYIKDKIPVE 372
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 138/363 (38%), Positives = 203/363 (55%)
Query: 182 PPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRN 241
PP L ++ G+ + TP+QA + P L +D+ AKTGSGKT + L G + +
Sbjct: 11 PPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGL-GLLQ----QI 65
Query: 242 DPRLGPT-VLVLSPTRELATQIQDEA---VKFGKSSRISCTCLYGGAPKGPQLKDIDRGV 297
D L T LVL PTRELA Q+ E +F +++I C GG P G Q +
Sbjct: 66 DASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLC--GGQPFGMQRDSLQHAP 123
Query: 298 DIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMY 357
I+VATPGRL D L+ +SL+ ++ LV+DEADRMLDMGF I +++ PA RQTL++
Sbjct: 124 HIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLLF 183
Query: 358 TATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQE 417
+ATWP + I+ + +P+ + I + D L I Q + K L+++L +
Sbjct: 184 SATWPEAIAAISGRVQRDPLAIEIDSTDALPP---IEQQFYETSSKGKIPLLQRLLSLHQ 240
Query: 418 PGSKIIVFCSTKKMCDQL--ARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT 475
P S +VFC+TKK C + A N Q A ++HGD Q +RD L +F G + VLVAT
Sbjct: 241 PSS-CVVFCNTKKDCQAVCDALNEVGQ-SALSLHGDLEQRDRDQTLVRFANGSARVLVAT 298
Query: 476 DVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIK 535
DVAARGLDIK + +VVN++ E +VHRI +A +F ++++ A+ +
Sbjct: 299 DVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISD 358
Query: 536 LLE 538
+L+
Sbjct: 359 MLQ 361
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 126/360 (35%), Positives = 195/360 (54%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
SF E+ R + G+ PT +Q + P+ALQ +D+V ++TGSGKT + +P
Sbjct: 5 SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
++ N P+ LVL+PTRELA Q++++ G+ RI +YG +P Q ++
Sbjct: 65 MVEWEENKPQ----ALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELK 120
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
+ IVV TPGR+ D +E +SL ++ YLV+DEAD ML+MGF Q+ I+ E+P +R T
Sbjct: 121 QKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMT 180
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILR 414
++++AT P +V +++ + P + I + +K EV +K L+ +
Sbjct: 181 MLFSATLPEDVERLSRTYMNAPTHIEI-KAAGITTDKIEHTLFEVREE-EKLSLLKDVTT 238
Query: 415 SQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLV 473
+ P S I+FC T++ D + R L R + IHG Q +R V++ FR G+ LV
Sbjct: 239 IENPDS-CIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLV 297
Query: 474 ATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDL 533
ATDVAARG+DI +I V+NYD P E YVHR A TF + R+ ++
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 126/360 (35%), Positives = 195/360 (54%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
SF E+ R + G+ PT +Q + P+ALQ +D+V ++TGSGKT + +P
Sbjct: 5 SFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCE 64
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
++ N P+ LVL+PTRELA Q++++ G+ RI +YG +P Q ++
Sbjct: 65 MVEWEENKPQ----ALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLELK 120
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
+ IVV TPGR+ D +E +SL ++ YLV+DEAD ML+MGF Q+ I+ E+P +R T
Sbjct: 121 QKTHIVVGTPGRVLDHIEKGTLSLERLKYLVIDEADEMLNMGFIDQVEAIIDELPTKRMT 180
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILR 414
++++AT P +V +++ + P + I + +K EV +K L+ +
Sbjct: 181 MLFSATLPEDVERLSRTYMNAPTHIEI-KAAGITTDKIEHTLFEVREE-EKLSLLKDVTT 238
Query: 415 SQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLV 473
+ P S I+FC T++ D + R L R + IHG Q +R V++ FR G+ LV
Sbjct: 239 IENPDS-CIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKFRYLV 297
Query: 474 ATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDL 533
ATDVAARG+DI +I V+NYD P E YVHR A TF + R+ ++
Sbjct: 298 ATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRFLEEI 357
>UNIPROTKB|O05855 [details] [associations]
symbol:rhlE "PROBABLE ATP-DEPENDENT RNA HELICASE RHLE"
species:83332 "Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell
wall" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005618
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003676
EMBL:BX842582 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOGENOM:HOG000268807 EMBL:CP003248 PIR:D70595 RefSeq:NP_217727.1
RefSeq:NP_337835.1 RefSeq:YP_006516683.1 SMR:O05855
EnsemblBacteria:EBMYCT00000003215 EnsemblBacteria:EBMYCT00000071518
GeneID:13318029 GeneID:888840 GeneID:923099 KEGG:mtc:MT3307
KEGG:mtu:Rv3211 KEGG:mtv:RVBD_3211 PATRIC:18129030
TubercuList:Rv3211 OMA:RWQLIDK ProtClustDB:CLSK792349
Uniprot:O05855
Length = 527
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 130/363 (35%), Positives = 191/363 (52%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+F G E++R + G P IQ + P+AL D++ A+TG GKT + +P
Sbjct: 11 TFAKLGVRDEIVRALGEEGIKRPFAIQELTLPLALDGEDVIGQARTGMGKTFAFGVPLLQ 70
Query: 235 HLKRCRND-PRLG-PTVLVLSPTRELATQIQDEAVKFGK--------------SSRISCT 278
+ P G P LV+ PTREL Q+ D+ GK R+S
Sbjct: 71 RITSGDGTRPLTGAPRALVVVPTRELCLQVTDDLATAGKYLTAGPDTDDAAAVRRRLSVV 130
Query: 279 CLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFE 338
+YGG P PQ++ + G D+VV TPGRL D+ + + L +S LVLDEAD MLD+GF
Sbjct: 131 SIYGGRPYEPQIEALRAGADVVVGTPGRLLDLCQQGHLQLGGLSVLVLDEADEMLDLGFL 190
Query: 339 PQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIE 398
P I +I++++PA RQ+++++AT P + +A +V P + A + A Q +
Sbjct: 191 PDIERILRQIPADRQSMLFSATMPDPIITLARTFMVRPTHIRAEAPHSSAVHDATEQFVY 250
Query: 399 VLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSER 457
+DK + ++L++++ G+ +I F TK+ ++A LT R F A+HGD Q R
Sbjct: 251 RAHALDKVELVSRVLQARDRGATMI-FTRTKRTAQKVADELTERGFAVGAVHGDLGQLAR 309
Query: 458 DYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXV 517
+ L FR G VLVATDVAARG+DI D+ V+NY P + YVHRI V
Sbjct: 310 EKALKAFRTGGIDVLVATDVAARGIDIDDVTHVINYQCPEDEKMYVHRIGRTGRAGRTGV 369
Query: 518 AYT 520
A T
Sbjct: 370 AVT 372
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 124/360 (34%), Positives = 196/360 (54%)
Query: 176 FDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIH 235
F A ++ V+ G+ PTPIQ + P + D++ IA+TG+GKT + LP
Sbjct: 4 FKAFSLLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINK 63
Query: 236 LKRCRNDPRLGPT-VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
R + D + T L+L+PTRELA+QI + + +YGG + Q+ I+
Sbjct: 64 FGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIE 123
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
G+DI+VATPGRL D++E I+ + VLDEAD MLDMGF ++ I+ ++P RQT
Sbjct: 124 LGLDILVATPGRLLDLIETGDINFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQT 183
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILR 414
L+++AT P E+ +A +L +P ++ I E + Q + L +K L IL
Sbjct: 184 LLFSATMPAEIEILAEAILTDPTKIQI--TAETVTIDLVNQSVYHLDKSNKVPLLFNILT 241
Query: 415 SQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLV 473
+ K+++FC TK D + + L + AA++H K+Q+ R+ L F+ VLV
Sbjct: 242 KADY-EKVLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVLV 300
Query: 474 ATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDL 533
ATDVAARG+D+ +I +V+NY+ P +Y+HRI +A +F + D R +++
Sbjct: 301 ATDVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTNI 360
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 131/367 (35%), Positives = 203/367 (55%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKT--LGYLLP 231
++F + +L++ + + G+ TPIQA++ P L+ +D++ AKTGSGKT G L
Sbjct: 10 LAFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALL 69
Query: 232 GFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS-SRISCTCLYGGAPKGPQL 290
+ +K+ R +V+ PTRELA Q+ E K + I L GG P GPQ+
Sbjct: 70 NKLEVKKFRIQS------MVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQI 123
Query: 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350
++ G ++V TPGRL + + + L+ ++ LVLDEADRML+MGF+ + IV P
Sbjct: 124 GSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPL 183
Query: 351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI-EVLAPMDKHRRL 409
RQTL+++AT+P +++ I+ ++ +PV V I + ++ I+Q +V D+ L
Sbjct: 184 DRQTLLFSATFPDQIKSISESIMTDPVMVKIASSED---QSTISQKFFKVGNDDDRLDAL 240
Query: 410 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGR 468
+L + S I FC+TKK Q+A L F A+HGD Q +RD L +F
Sbjct: 241 RLLLLGNQVESTAI-FCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKS 299
Query: 469 SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSR 528
+ +LVATDVAARGLDI + +V+NY E +VHRI +AY+ F D++S
Sbjct: 300 ASILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKES- 358
Query: 529 YASDLIK 535
Y L++
Sbjct: 359 YKVGLLE 365
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 553 (199.7 bits), Expect = 1.9e-53, P = 1.9e-53
Identities = 131/367 (35%), Positives = 203/367 (55%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKT--LGYLLP 231
++F + +L++ + + G+ TPIQA++ P L+ +D++ AKTGSGKT G L
Sbjct: 10 LAFSSLSLKQDLVKNLSSLGYEQMTPIQAKTLPELLKGKDVIGEAKTGSGKTAAFGLALL 69
Query: 232 GFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS-SRISCTCLYGGAPKGPQL 290
+ +K+ R +V+ PTRELA Q+ E K + I L GG P GPQ+
Sbjct: 70 NKLEVKKFRIQS------MVICPTRELADQVAKELRKLARGIHNIKILTLCGGTPFGPQI 123
Query: 291 KDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPA 350
++ G ++V TPGRL + + + L+ ++ LVLDEADRML+MGF+ + IV P
Sbjct: 124 GSLEHGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRMLEMGFQAALDNIVGRTPL 183
Query: 351 RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI-EVLAPMDKHRRL 409
RQTL+++AT+P +++ I+ ++ +PV V I + ++ I+Q +V D+ L
Sbjct: 184 DRQTLLFSATFPDQIKSISESIMTDPVMVKIASSED---QSTISQKFFKVGNDDDRLDAL 240
Query: 410 EQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGR 468
+L + S I FC+TKK Q+A L F A+HGD Q +RD L +F
Sbjct: 241 RLLLLGNQVESTAI-FCNTKKETQQVADALHFDGFSVLALHGDLEQRDRDQTLLRFANKS 299
Query: 469 SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSR 528
+ +LVATDVAARGLDI + +V+NY E +VHRI +AY+ F D++S
Sbjct: 300 ASILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGIAYSLFSDKES- 358
Query: 529 YASDLIK 535
Y L++
Sbjct: 359 YKVGLLE 365
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 136/371 (36%), Positives = 197/371 (53%)
Query: 159 RHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIA 218
+ E SG+E P P SF G +L N G+ +PTPIQ+Q+ P+AL+ RD++ +A
Sbjct: 32 KDETQTSGEE-PAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLA 90
Query: 219 KTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCT 278
+TGSGKT + LP L+ P+ LVL+PTRELA QI G + + C
Sbjct: 91 ETGSGKTAAFALP---MLQALMEAPQT-LFGLVLAPTRELAYQISQAFETLGSTIGVRCA 146
Query: 279 CLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR-ISLNQVSYLVLDEADRMLDMGF 337
+ GG Q + + I+VATPGRL D LE + SL + YL +DEADR+LDM F
Sbjct: 147 VIVGGMDMVAQSIALGKKPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDEADRLLDMDF 206
Query: 338 EPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHI 397
+ KI++ +P R T +++AT +V + L NPV+V++ + + + Q
Sbjct: 207 GESLDKIIRILPRTRHTYLFSATMSTKVESLQRASLSNPVRVSVSSKYQTVST---LQSS 263
Query: 398 EVLAPMDKHRRLEQI-LRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQS 455
+ P KH+ L + L ++ G I+F +T ++A L FGA +HG SQS
Sbjct: 264 YICIP-HKHKNLYLVYLLNEFAGQSAIIFTTTVHETQRVAFMLRALGFGAIPLHGQLSQS 322
Query: 456 ERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXX 515
R L +FR+ +LVATDVAARGLDI + VV N+D P + Y+HR+
Sbjct: 323 ARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKS 382
Query: 516 XVAYTFFGDQD 526
VA +F D
Sbjct: 383 GVAISFVTQYD 393
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 136/376 (36%), Positives = 201/376 (53%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+F+ LL+ V GFS PTPIQA++ P+AL +DI+A A TGSGKT +LLP
Sbjct: 191 TFEELHLSRPLLKAVQKLGFSQPTPIQAKAIPLALNGKDILASASTGSGKTAAFLLPVLE 250
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
L R+ VL+L PTRELA Q Q + S I+ + GG Q ++
Sbjct: 251 RLL-FRDSEYRAIRVLILLPTRELALQCQSVMENLAQFSNITSCLIVGGLSNKAQEVELR 309
Query: 295 RGVDIVVATPGRLND-ILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
+ D+V+ATPGRL D +L I L+ + L+LDEADR+LDMGF+ +I KIV+ P RQ
Sbjct: 310 KSPDVVIATPGRLIDHLLNAHGIGLDDLEILILDEADRLLDMGFKDEINKIVESCPTNRQ 369
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRR----L 409
T++++AT EV+ +A L P++V + + ++ + + Q + P R L
Sbjct: 370 TMLFSATLNDEVKTLAKLSLQQPIRVQVDALMQVTST--LEQEFVKIKPQHLSDRPAILL 427
Query: 410 EQILRSQEPGSKIIVFCSTKKMCDQLARNL-TRQFGAAAIHGDKSQSERDYVLNQFRAGR 468
R G II FC +KK +L AA +HG+ SQ +R L QFR G+
Sbjct: 428 SLCTRVFNQGGTII-FCRSKKEVHRLRIIFGLSDLKAAELHGNLSQEQRFDSLQQFRDGQ 486
Query: 469 SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSR 528
L+A+DVA+RGLDI ++ V+NY+ P + +Y+HR+ + +F D D +
Sbjct: 487 VNYLLASDVASRGLDIIGVKTVINYNMPNNMANYIHRVGRTARAGMDGKSCSFITDNDRK 546
Query: 529 YASDLI-KLLEGAKQQ 543
D++ K AK +
Sbjct: 547 LLKDIVTKARNKAKSR 562
WARNING: HSPs involving 743 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 703 578 0.00081 120 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 993
No. of states in DFA: 618 (66 KB)
Total size of DFA: 309 KB (2159 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 49.36u 0.08s 49.44t Elapsed: 00:00:13
Total cpu time: 49.45u 0.09s 49.54t Elapsed: 00:00:16
Start: Tue May 21 11:01:31 2013 End: Tue May 21 11:01:47 2013
WARNINGS ISSUED: 2