BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005313
(703 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 303 bits (777), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 169/410 (41%), Positives = 248/410 (60%), Gaps = 21/410 (5%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V +G+ PP SF ++ + ++ PTP+Q + PI + RD++A A+TG
Sbjct: 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 62
Query: 222 SGKTLGYLLPGFIH---------LKRCRNDPRLG-----PTVLVLSPTRELATQIQDEAV 267
SGKT +LLP L+ + + R G P LVL+PTRELA QI +EA
Sbjct: 63 SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 122
Query: 268 KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLD 327
KF SR+ +YGGA G Q++D++RG ++VATPGRL D++E +I L+ YLVLD
Sbjct: 123 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 182
Query: 328 EADRMLDMGFEPQIRKIVKE--VPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
EADRMLDMGFEPQIR+IV++ +P + R T+M++AT+P+E++ +A D L + + +G
Sbjct: 183 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242
Query: 384 VDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ- 442
V + N ITQ + + DK L +L + S +VF TKK D L L +
Sbjct: 243 VGSTSEN--ITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG 300
Query: 443 FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDY 502
+ +IHGD+SQ +R+ L+QFR+G+SP+LVAT VAARGLDI +++ V+N+D P+ +E+Y
Sbjct: 301 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 360
Query: 503 VHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA 552
VHRI +A +FF +++ DL+ LL AKQ+VP L +MA
Sbjct: 361 VHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 410
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 283 bits (723), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 166/393 (42%), Positives = 235/393 (59%), Gaps = 9/393 (2%)
Query: 162 VTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTG 221
V V+G +VP P F + ++ V+ +G+ PTPIQ S P+ RD++A A+TG
Sbjct: 44 VKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTG 103
Query: 222 SGKTLGYLLPGFIHLKRCRNDPRLG-PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCL 280
SGKT +LLP L ++ LG P V+++SPTRELA QI +EA KF S + +
Sbjct: 104 SGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIV 163
Query: 281 YGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQ 340
YGG Q + I RG +V+ATPGRL D ++ I+ ++VLDEADRMLDMGF
Sbjct: 164 YGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSED 223
Query: 341 IRKIVKEVPAR--RQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIE 398
+R+I+ V R QTLM++AT+P E++++A + L N V V IG V A + Q I
Sbjct: 224 MRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG--GACSDVKQTIY 281
Query: 399 VLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAAAIHGDKSQSER 457
+ K +L +IL Q G+ IVF TK+ D LA L+ ++F +IHGD+ QS+R
Sbjct: 282 EVNKYAKRSKLIEILSEQADGT--IVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQR 339
Query: 458 DYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXV 517
+ L F+ G VL+AT VA+RGLDIK+I+ V+NYD P+ ++DYVHRI
Sbjct: 340 EQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGR 399
Query: 518 AYTFFG-DQDSRYASDLIKLLEGAKQQVPRELR 549
A +FF ++D A+DL+K+LEG+ Q VP LR
Sbjct: 400 ATSFFDPEKDRAIAADLVKILEGSGQTVPDFLR 432
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 264 bits (674), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 123/236 (52%), Positives = 167/236 (70%), Gaps = 7/236 (2%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E YRR E+TV G P P ++F FP ++ + F+ PT IQAQ WP+AL D
Sbjct: 9 ETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 68
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKF 269
+V +A+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A ++
Sbjct: 69 MVGVAQTGSGKTLSYLLPAIVHIN---HQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 125
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
++ R+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEA
Sbjct: 126 CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 185
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVD 385
DRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + + +NIG ++
Sbjct: 186 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGALE 241
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 263 bits (671), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 123/233 (52%), Positives = 165/233 (70%), Gaps = 7/233 (3%)
Query: 154 EAYRRRHEVTVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRD 213
E YRR E+TV G P P ++F FP ++ + F+ PT IQAQ WP+AL D
Sbjct: 23 ETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLD 82
Query: 214 IVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL----GPTVLVLSPTRELATQIQDEAVKF 269
+V +A+TGSGKTL YLLP +H+ + P L GP LVL+PTRELA Q+Q A ++
Sbjct: 83 MVGVAQTGSGKTLSYLLPAIVHIN---HQPFLERGDGPICLVLAPTRELAQQVQQVAAEY 139
Query: 270 GKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEA 329
++ R+ TC+YGGAPKGPQ++D++RGV+I +ATPGRL D LE + +L + +YLVLDEA
Sbjct: 140 CRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEA 199
Query: 330 DRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIG 382
DRMLDMGFEPQIRKIV ++ RQTLM++ATWP+EVR++A D L + + +NIG
Sbjct: 200 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 252
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 146/216 (67%), Gaps = 4/216 (1%)
Query: 169 VPPPFMSF-DATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLG 227
+P P F DA P+LL+ + G PTPIQ+Q+WPI LQ D++ +A+TG+GKTL
Sbjct: 14 IPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLS 73
Query: 228 YLLPGFIHLKR--CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAP 285
YL+PGFIHL + R GP +LVL+PTRELA ++ E K+ + C+YGG
Sbjct: 74 YLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKG-LKSICIYGGRN 132
Query: 286 KGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIV 345
+ Q++DI +GVDI++ATPGRLND+ ++L ++YLV+DEAD+MLDM FEPQIRKI+
Sbjct: 133 RNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKIL 192
Query: 346 KEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNI 381
+V RQT+M +ATWP VR++A L +P+ V +
Sbjct: 193 LDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 206 bits (523), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 201/380 (52%), Gaps = 11/380 (2%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+FD G +LLR ++ GF P+ IQ ++ ++ RD++A +++G+GKT + I
Sbjct: 38 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATF----SI 93
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
+ +C + L+L+PTRELA QIQ + G + C GG G ++ +D
Sbjct: 94 SVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 153
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
G +V TPGR+ D++ R + + LVLDEAD ML+ GF+ QI + + +P Q
Sbjct: 154 YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 213
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI-- 412
++ +AT P E+ ++ + +P+++ + DEL + I Q +A + + + +
Sbjct: 214 VLISATLPHEILEMTNKFMTDPIRILVKR-DELTL-EGIKQFF--VAVEREEWKFDTLCD 269
Query: 413 LRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPV 471
L ++ ++FC+TK+ D L + F +++HGD Q ER+ ++ +FR+G S V
Sbjct: 270 LYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRV 329
Query: 472 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYAS 531
L++TDV ARGLD+ + +++NYD P E Y+HRI VA F + D R
Sbjct: 330 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILR 389
Query: 532 DLIKLLEGAKQQVPRELRDM 551
D+ + ++P + D+
Sbjct: 390 DIEQYYSTQIDEMPMNVADL 409
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 206 bits (523), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 201/380 (52%), Gaps = 11/380 (2%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+FD G +LLR ++ GF P+ IQ ++ ++ RD++A +++G+GKT + I
Sbjct: 39 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATF----SI 94
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
+ +C + L+L+PTRELA QIQ + G + C GG G ++ +D
Sbjct: 95 SVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 154
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
G +V TPGR+ D++ R + + LVLDEAD ML+ GF+ QI + + +P Q
Sbjct: 155 YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 214
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI-- 412
++ +AT P E+ ++ + +P+++ + DEL + I Q +A + + + +
Sbjct: 215 VLISATLPHEILEMTNKFMTDPIRILVKR-DELTL-EGIKQFF--VAVEREEWKFDTLCD 270
Query: 413 LRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPV 471
L ++ ++FC+TK+ D L + F +++HGD Q ER+ ++ +FR+G S V
Sbjct: 271 LYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRV 330
Query: 472 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYAS 531
L++TDV ARGLD+ + +++NYD P E Y+HRI VA F + D R
Sbjct: 331 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILR 390
Query: 532 DLIKLLEGAKQQVPRELRDM 551
D+ + ++P + D+
Sbjct: 391 DIEQYYSTQIDEMPMNVADL 410
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 206 bits (523), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 201/380 (52%), Gaps = 11/380 (2%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+FD G +LLR ++ GF P+ IQ ++ ++ RD++A +++G+GKT + I
Sbjct: 39 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATF----SI 94
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
+ +C + L+L+PTRELA QIQ + G + C GG G ++ +D
Sbjct: 95 SVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 154
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
G +V TPGR+ D++ R + + LVLDEAD ML+ GF+ QI + + +P Q
Sbjct: 155 YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 214
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI-- 412
++ +AT P E+ ++ + +P+++ + DEL + I Q +A + + + +
Sbjct: 215 VLISATLPHEILEMTNKFMTDPIRILVKR-DELTL-EGIKQFF--VAVEREEWKFDTLCD 270
Query: 413 LRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPV 471
L ++ ++FC+TK+ D L + F +++HGD Q ER+ ++ +FR+G S V
Sbjct: 271 LYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRV 330
Query: 472 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYAS 531
L++TDV ARGLD+ + +++NYD P E Y+HRI VA F + D R
Sbjct: 331 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILR 390
Query: 532 DLIKLLEGAKQQVPRELRDM 551
D+ + ++P + D+
Sbjct: 391 DIEQYYSTQIDEMPMNVADL 410
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 205 bits (521), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 116/380 (30%), Positives = 201/380 (52%), Gaps = 11/380 (2%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+FD G +LLR ++ GF P+ IQ ++ ++ RD++A +++G+GKT + I
Sbjct: 17 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATF----SI 72
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
+ +C + L+L+PTRELA QIQ + G + C GG G ++ +D
Sbjct: 73 SVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 132
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
G +V TPGR+ D++ R + + LVLDEAD ML+ GF+ QI + + +P Q
Sbjct: 133 YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 192
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI-- 412
++ +AT P E+ ++ + +P+++ + DEL + I Q +A + + + +
Sbjct: 193 VLISATLPHEILEMTNKFMTDPIRILVKR-DELTL-EGIKQFF--VAVEREEWKFDTLCD 248
Query: 413 LRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPV 471
L ++ ++FC+TK+ D L + F +++HGD Q ER+ ++ +FR+G S V
Sbjct: 249 LYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRV 308
Query: 472 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYAS 531
L++TDV ARGLD+ + +++NYD P E Y+HRI VA F + D R
Sbjct: 309 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILR 368
Query: 532 DLIKLLEGAKQQVPRELRDM 551
D+ + ++P + D+
Sbjct: 369 DIEQYYSTQIDEMPMNVADL 388
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 204 bits (518), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 201/380 (52%), Gaps = 11/380 (2%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+FD G +LLR ++ GF P+ IQ ++ ++ RD++A +++G+GKT + +
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATF----SV 57
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
+ +C + L+L+PTRELA Q+Q + G + C GG G ++ +D
Sbjct: 58 SVLQCLDIQVRETQALILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD 117
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
G +V TPGR+ D++ R + + LVLDEAD ML+ GF+ QI + + +P Q
Sbjct: 118 YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 177
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI-- 412
++ +AT P E+ ++ + +P+++ + DEL + I Q +A + + + +
Sbjct: 178 VLISATLPHEILEMTNKFMTDPIRILVKR-DELTL-EGIKQFF--VAVEREEWKFDTLCD 233
Query: 413 LRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPV 471
L ++ ++FC+TK+ D L + F +++HGD Q ER+ ++ +FR+G S V
Sbjct: 234 LYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRV 293
Query: 472 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYAS 531
L++TDV ARGLD+ + +++NYD P E Y+HRI VA F + D R
Sbjct: 294 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLR 353
Query: 532 DLIKLLEGAKQQVPRELRDM 551
D+ + ++P + D+
Sbjct: 354 DIEQYYSTQIDEMPMNVADL 373
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/380 (30%), Positives = 200/380 (52%), Gaps = 11/380 (2%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+FD G +LLR ++ GF P+ IQ ++ ++ RD++A +++G+GKT + +
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATF----SV 57
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
+ +C + L+L+PTRELA Q+Q + G + GG G ++ +D
Sbjct: 58 SVLQCLDIQVRETQALILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKLD 117
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
G +V TPGR+ D++ R + + LVLDEAD ML+ GF+ QI + + +P Q
Sbjct: 118 YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQV 177
Query: 355 LMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQI-- 412
++ +AT P EV ++ + +P+++ + DEL + I Q +A + + + +
Sbjct: 178 VLISATLPHEVLEMTNKFMTDPIRILVKR-DELTL-EGIKQFF--VAVEREEWKFDTLCD 233
Query: 413 LRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPV 471
L ++ ++FC+TK+ D L + F +++HGD Q ER+ ++ +FR+G S V
Sbjct: 234 LYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRV 293
Query: 472 LVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYAS 531
L++TDV ARGLD+ + +++NYD P E Y+HRI VA F + D R
Sbjct: 294 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDIRVLR 353
Query: 532 DLIKLLEGAKQQVPRELRDM 551
D+ + ++P + D+
Sbjct: 354 DIEQYYSTQIDEMPMNVADL 373
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 195 bits (496), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 112/334 (33%), Positives = 181/334 (54%), Gaps = 11/334 (3%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+F+ ELL + AGF P+PIQ ++ P+A+ RDI+A AK G+GKT +++P
Sbjct: 22 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 81
Query: 235 HLKRCRNDPRLGPT-VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293
+K P+L L++ PTRELA Q GK ISC GG + +
Sbjct: 82 KVK-----PKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL 136
Query: 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
+ V I+V TPGR+ D+ + L+ S ++DEAD+ML F+ I +I+ +P Q
Sbjct: 137 NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQ 196
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL 413
+L+++AT+P V++ L P ++N+ ++EL K ITQ+ + K L +
Sbjct: 197 SLLFSATFPLTVKEFMVKHLHKPYEINL--MEELTL-KGITQYYAFVEERQKLHCLNTLF 253
Query: 414 RSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472
S+ ++ I+FC++ + LA+ +T + H Q ER+ V ++FR G+ L
Sbjct: 254 -SKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTL 312
Query: 473 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
V +D+ RG+DI+ + VV+N+DFP E Y+HRI
Sbjct: 313 VCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRI 346
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 183/340 (53%), Gaps = 24/340 (7%)
Query: 173 FMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSR-DIVAIAKTGSGKTLGYLLP 231
+ +F+ +L + N GF PT IQ + P+ L +IVA A+TGSGKT + +P
Sbjct: 5 YXNFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIP 64
Query: 232 GFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLK 291
I L N G ++L+PTRELA Q+ DE + + +YGG PQ+K
Sbjct: 65 -LIELVNENN----GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIK 119
Query: 292 DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPAR 351
+ + +IVV TPGR+ D + ++L V Y +LDEAD L+ GF + KI+
Sbjct: 120 AL-KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXLNXGFIKDVEKILNACNKD 178
Query: 352 RQTLMYTATWPREV----RKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 407
++ L+++AT PRE+ +K D ++N N+++ ++EV ++
Sbjct: 179 KRILLFSATXPREILNLAKKYXGDYSFIKAKIN-ANIEQ--------SYVEV-NENERFE 228
Query: 408 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRA 466
L ++L+++E +VFC TK+ +LA L F A AIHGD SQS+R+ V+ F+
Sbjct: 229 ALCRLLKNKEFYG--LVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQ 286
Query: 467 GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
+ +L+ATDV +RG+D+ D+ V+NY P E Y HRI
Sbjct: 287 KKIRILIATDVXSRGIDVNDLNCVINYHLPQNPESYXHRI 326
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 142/220 (64%), Gaps = 11/220 (5%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+FD P + + A + PTPIQ + P L+ RDI+A A+TGSGKT +L+P
Sbjct: 24 NFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIIN 83
Query: 235 HLKRCR--NDPRLG----PTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGP 288
HL C+ N R P L+L+PTRELA QI E+ KF ++ + +YGGA
Sbjct: 84 HLV-CQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHS 142
Query: 289 QLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKE- 347
Q++++ G ++VATPGRL D +E +ISL Y+VLDEADRMLDMGFEPQIRKI++E
Sbjct: 143 QIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEES 202
Query: 348 -VPA--RRQTLMYTATWPREVRKIAADLLVNPVQVNIGNV 384
+P+ RQTLM++AT+P+E++K+AAD L N + + +G V
Sbjct: 203 NMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 189 bits (481), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 198/379 (52%), Gaps = 8/379 (2%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
SFD LLR ++ GF P+ IQ ++ ++ D++A A++G+GKT + +
Sbjct: 41 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS--- 97
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
L++ D + LVL+PTRELA QIQ + G SC GG +++ +
Sbjct: 98 ILQQIELDLK-ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQ 156
Query: 295 RGV-DIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
I+V TPGR+ D+L R +S + VLDEAD ML GF+ QI I +++ + Q
Sbjct: 157 MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQ 216
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL 413
++ +AT P +V ++ + +P+++ + +EL +I V K L +
Sbjct: 217 VVLLSATMPSDVLEVTKKFMRDPIRILVKK-EELTLEGIRQFYINVEREEWKLDTLCDLY 275
Query: 414 RSQEPGSKIIVFCSTKKMCDQLARNL-TRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472
+ ++ ++F +T++ D L + R F +A+HGD Q ERD ++ +FR+G S VL
Sbjct: 276 ETLTI-TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVL 334
Query: 473 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASD 532
+ TD+ ARG+D++ + +V+NYD PT E+Y+HRI VA ++D R D
Sbjct: 335 ITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRD 394
Query: 533 LIKLLEGAKQQVPRELRDM 551
+ + +++P + D+
Sbjct: 395 IETFYNTSIEEMPLNVADL 413
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 188 bits (477), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 198/379 (52%), Gaps = 8/379 (2%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
SFD LLR ++ GF P+ IQ ++ ++ D++A A++G+GKT + +
Sbjct: 15 SFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS--- 71
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
L++ D + LVL+PTRELA QIQ + G SC GG +++ +
Sbjct: 72 ILQQIELDLK-ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQ 130
Query: 295 RGV-DIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
I+V TPGR+ D+L R +S + VLDEAD ML GF+ QI I +++ + Q
Sbjct: 131 MEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQ 190
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQIL 413
++ +AT P +V ++ + +P+++ + +EL +I V K L +
Sbjct: 191 VVLLSATMPSDVLEVTKKFMRDPIRILVKK-EELTLEGIRQFYINVEREEWKLDTLCDLY 249
Query: 414 RSQEPGSKIIVFCSTKKMCDQLARNL-TRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVL 472
+ ++ ++F +T++ D L + R F +A+HGD Q ERD ++ +FR+G S VL
Sbjct: 250 ETLTI-TQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVL 308
Query: 473 VATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASD 532
+ TD+ ARG+D++ + +V+NYD PT E+Y+HRI VA ++D R D
Sbjct: 309 ITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRD 368
Query: 533 LIKLLEGAKQQVPRELRDM 551
+ + +++P + D+
Sbjct: 369 IETFYNTSIEEMPLNVADL 387
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 186 bits (473), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 194/374 (51%), Gaps = 8/374 (2%)
Query: 176 FDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIH 235
FD LLR V GF P+ IQ ++ ++ D++A A++G+GKT + +
Sbjct: 24 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAA--- 80
Query: 236 LKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR 295
L+R + P L+L+PTRELA QIQ + I GG + + R
Sbjct: 81 LQRIDTSVK-APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-R 138
Query: 296 GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 355
IVV TPGR+ D ++ RR +++ +LDEAD ML GF+ QI +I +P Q +
Sbjct: 139 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV 198
Query: 356 MYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRS 415
+ +AT P +V ++ + NPV++ + DEL ++ V K+ L + S
Sbjct: 199 LLSATMPNDVLEVTTKFMRNPVRILVKK-DELTLEGIKQFYVNVEEEEYKYECLTDLYDS 257
Query: 416 QEPGSKIIVFCSTKKMCDQLARNL-TRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVA 474
++ ++FC+T++ ++L L +F +AI+ D Q ERD ++ +FR+G S +L++
Sbjct: 258 ISV-TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILIS 316
Query: 475 TDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLI 534
TD+ ARG+D++ + +V+NYD P E+Y+HRI VA F ++D +L
Sbjct: 317 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELE 376
Query: 535 KLLEGAKQQVPREL 548
K +++P ++
Sbjct: 377 KFYSTQIEELPSDI 390
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 179 bits (454), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 114/374 (30%), Positives = 189/374 (50%), Gaps = 8/374 (2%)
Query: 176 FDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIH 235
FD LLR V GF P+ IQ ++ ++ D++A A++G+GKT + +
Sbjct: 23 FDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSIAA--- 79
Query: 236 LKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR 295
L+R + P L L+PTRELA QIQ I GG + + R
Sbjct: 80 LQRIDTSVK-APQALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFVEDAEGL-R 137
Query: 296 GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 355
IVV TPGR+ D ++ RR +++ +LDEAD L GF+ QI +I +P Q +
Sbjct: 138 DAQIVVGTPGRVFDNIQRRRFRTDKIKXFILDEADEXLSSGFKEQIYQIFTLLPPTTQVV 197
Query: 356 MYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRS 415
+ +AT P +V ++ NPV++ + DEL ++ V K+ L + S
Sbjct: 198 LLSATXPNDVLEVTTKFXRNPVRILVKK-DELTLEGIKQFYVNVEEEEYKYECLTDLYDS 256
Query: 416 QEPGSKIIVFCSTKKMCDQLARNL-TRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVA 474
++ ++FC+T++ ++L L +F +AI+ D Q ERD + +FR+G S +L++
Sbjct: 257 ISV-TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIXKEFRSGSSRILIS 315
Query: 475 TDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLI 534
TD+ ARG+D++ + +V+NYD P E+Y+HRI VA F ++D +L
Sbjct: 316 TDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAXRELE 375
Query: 535 KLLEGAKQQVPREL 548
K +++P ++
Sbjct: 376 KFYSTQIEELPSDI 389
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 175 bits (444), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 166/318 (52%), Gaps = 22/318 (6%)
Query: 189 VHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPT 248
+ GF + T +Q+++ P+ LQ +++V AKTGSGKT Y +P LG
Sbjct: 9 IREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL----------ELGMK 58
Query: 249 VLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLN 308
LV++PTREL Q+ G+ +YGG P Q+ + R DIVVATPGRL
Sbjct: 59 SLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNADIVVATPGRLL 117
Query: 309 DILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPREVRKI 368
D+ I L+ +++DEAD M +MGF I+ I+ + R+ T +++AT P E+RK+
Sbjct: 118 DLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKV 177
Query: 369 AADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCST 428
D + N ++ E A +H V D +++ + +++ G +IVF T
Sbjct: 178 VKDFITNYEEI------EACIGLANVEHKFVHVKDDWRSKVQALRENKDKG--VIVFVRT 229
Query: 429 KKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIR 488
+ +L R A + GD QS R+ ++ FR G +L+ TDVA+RGLDI +
Sbjct: 230 RNRVAKLVRLFD---NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVE 286
Query: 489 VVVNYDFPTGVEDYVHRI 506
V+N+D P + Y+HRI
Sbjct: 287 KVINFDAPQDLRTYIHRI 304
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 111/377 (29%), Positives = 199/377 (52%), Gaps = 14/377 (3%)
Query: 183 PELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRND 242
PELLR + + GF P+ +Q + P A+ D++ AK+G GKT ++L L +
Sbjct: 16 PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-----E 70
Query: 243 PRLGP-TVLVLSPTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGV-DI 299
P G +VLV+ TRELA QI E +F K + +GG + + + I
Sbjct: 71 PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHI 130
Query: 300 VVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYT 358
VV TPGR+ + + ++L + + +LDEAD+ML+ + +++I + P +Q +M++
Sbjct: 131 VVGTPGRILALARNKSLNLKHIKHFILDEADKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 190
Query: 359 ATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEP 418
AT +E+R + + +P+++ + + +L + + Q+ L +K+R+L +L E
Sbjct: 191 ATLSKEIRPVCRKFMQDPMEIFVDDETKLTLH-GLQQYYVKLKDNEKNRKLFDLLDVLE- 248
Query: 419 GSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV 477
+++++F + + C LA+ L Q F A AIH Q ER QF+ + +LVAT++
Sbjct: 249 FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 308
Query: 478 AARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQ-DSRYASDLIKL 536
RG+DI+ + + NYD P + Y+HR+ +A TF D+ D++ +D+
Sbjct: 309 FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDR 368
Query: 537 LEGAKQQVPRELRDMAS 553
E ++P E+ D++S
Sbjct: 369 FEVNISELPDEI-DISS 384
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 169 bits (427), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 198/377 (52%), Gaps = 14/377 (3%)
Query: 183 PELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRND 242
PELLR + + GF P+ +Q + P A+ D++ AK+G GKT ++L L +
Sbjct: 17 PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-----E 71
Query: 243 PRLGP-TVLVLSPTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGV-DI 299
P G +VLV+ TRELA QI E +F K + +GG + + + I
Sbjct: 72 PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHI 131
Query: 300 VVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYT 358
VV TPGR+ + + ++L + + +LDE D+ML+ + +++I + P +Q +M++
Sbjct: 132 VVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 191
Query: 359 ATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEP 418
AT +E+R + + +P+++ + + +L + + Q+ L +K+R+L +L E
Sbjct: 192 ATLSKEIRPVCRKFMQDPMEIFVDDETKLTLH-GLQQYYVKLKDNEKNRKLFDLLDVLE- 249
Query: 419 GSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV 477
+++++F + + C LA+ L Q F A AIH Q ER QF+ + +LVAT++
Sbjct: 250 FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 309
Query: 478 AARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQ-DSRYASDLIKL 536
RG+DI+ + + NYD P + Y+HR+ +A TF D+ D++ +D+
Sbjct: 310 FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDR 369
Query: 537 LEGAKQQVPRELRDMAS 553
E ++P E+ D++S
Sbjct: 370 FEVNISELPDEI-DISS 385
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 168 bits (426), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 198/377 (52%), Gaps = 14/377 (3%)
Query: 183 PELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRND 242
PELLR + + GF P+ +Q + P A+ D++ AK+G GKT ++L L +
Sbjct: 17 PELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQL-----E 71
Query: 243 PRLGP-TVLVLSPTRELATQIQDEAVKFGKSS-RISCTCLYGGAPKGPQLKDIDRGV-DI 299
P G +VLV+ TRELA QI E +F K + +GG + + + I
Sbjct: 72 PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHI 131
Query: 300 VVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD-MGFEPQIRKIVKEVPARRQTLMYT 358
VV TPGR+ + + ++L + + +LDE D+ML+ + +++I + P +Q +M++
Sbjct: 132 VVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 191
Query: 359 ATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEP 418
AT +E+R + + +P+++ + + +L + + Q+ L +K+R+L +L E
Sbjct: 192 ATLSKEIRPVCRKFMQDPMEIFVDDETKLTLH-GLQQYYVKLKDNEKNRKLFDLLDVLE- 249
Query: 419 GSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDV 477
+++++F + + C LA+ L Q F A AIH Q ER QF+ + +LVAT++
Sbjct: 250 FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL 309
Query: 478 AARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQ-DSRYASDLIKL 536
RG+DI+ + + NYD P + Y+HR+ +A TF D+ D++ +D+
Sbjct: 310 FGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDR 369
Query: 537 LEGAKQQVPRELRDMAS 553
E ++P E+ D++S
Sbjct: 370 FEVNISELPDEI-DISS 385
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 120/369 (32%), Positives = 190/369 (51%), Gaps = 32/369 (8%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPG 232
SFD G PELL+ ++ F P+ IQ ++ P+ L + R+++A +++G+GKT + L
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 233 FIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLY-GGAPKGPQLK 291
+ N P + L+P+RELA Q + + GK ++I+ + K Q+
Sbjct: 66 LTRV----NPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQI- 120
Query: 292 DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPA 350
++V TPG + D++ + + L ++ VLDEAD MLD G Q ++ + +P
Sbjct: 121 ----NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK 176
Query: 351 RRQTLMYTATWPREVRKIAADLLVNP----VQVNIGNVDELAANKAITQ-HIEVLAPMDK 405
Q ++++AT+ VR+ A ++ N +Q N NVD AI Q +++ DK
Sbjct: 177 DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVD------AIKQLYMDCKNEADK 230
Query: 406 HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAI-HGDKSQSERDYVLNQF 464
L ++ GS II F +TKK + L L + +I HGD ERD +++ F
Sbjct: 231 FDVLTELYGVMTIGSSII-FVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDF 289
Query: 465 RAGRSPVLVATDVAARGLDIKDIRVVVNYDFPT---GVED---YVHRIXXXXXXXXXXVA 518
R GRS VL+ T+V ARG+DI + +VVNYD PT G D Y+HRI VA
Sbjct: 290 REGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVA 349
Query: 519 YTFFGDQDS 527
+F D++S
Sbjct: 350 ISFVHDKNS 358
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 119/369 (32%), Positives = 190/369 (51%), Gaps = 32/369 (8%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPG 232
SFD G PELL+ ++ F P+ IQ ++ P+ L + R+++A +++G+GKT + L
Sbjct: 6 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65
Query: 233 FIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLY-GGAPKGPQLK 291
+ N P + L+P+RELA Q + + GK ++I+ + K Q+
Sbjct: 66 LTRV----NPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQI- 120
Query: 292 DIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPA 350
++V TPG + D++ + + L ++ VLDEAD MLD G Q ++ + +P
Sbjct: 121 ----NAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK 176
Query: 351 RRQTLMYTATWPREVRKIAADLLVNP----VQVNIGNVDELAANKAITQ-HIEVLAPMDK 405
Q ++++AT+ VR+ A ++ N +Q N NVD AI Q +++ DK
Sbjct: 177 DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVD------AIKQLYMDCKNEADK 230
Query: 406 HRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQF 464
L ++ GS II F +TKK + L L + + +HGD ERD +++ F
Sbjct: 231 FDVLTELYGLMTIGSSII-FVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDF 289
Query: 465 RAGRSPVLVATDVAARGLDIKDIRVVVNYDFPT---GVED---YVHRIXXXXXXXXXXVA 518
R GRS VL+ T+V ARG+DI + +VVNYD PT G D Y+HRI VA
Sbjct: 290 REGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVA 349
Query: 519 YTFFGDQDS 527
+F D++S
Sbjct: 350 ISFVHDKNS 358
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/208 (40%), Positives = 121/208 (58%), Gaps = 3/208 (1%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
M F PE+L +H G ++PTPIQA + P+AL+ +D++ A+TG+GKTL + LP
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 234 IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293
L + R P LVL+PTRELA Q+ E + + +YGG G Q + +
Sbjct: 61 ERLAPSQERGR-KPRALVLTPTRELALQVASELTAV--APHLKVVAVYGGTGYGKQKEAL 117
Query: 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
RG D VVATPGR D L + L++V VLDEAD ML MGFE ++ ++ P RQ
Sbjct: 118 LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQ 177
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNI 381
TL+++AT P +++A + NPV +N+
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 121/208 (58%), Gaps = 3/208 (1%)
Query: 174 MSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGF 233
M F PE+L +H G ++PTPI+A + P+AL+ +D++ A+TG+GKTL + LP
Sbjct: 1 MEFKDFPLKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIA 60
Query: 234 IHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDI 293
L + R P LVL+PTRELA Q+ E + + +YGG G Q + +
Sbjct: 61 ERLAPSQERGR-KPRALVLTPTRELALQVASELTAV--APHLKVVAVYGGTGYGKQKEAL 117
Query: 294 DRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
RG D VVATPGR D L + L++V VLDEAD ML MGFE ++ ++ P RQ
Sbjct: 118 LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQ 177
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNI 381
TL+++AT P +++A + NPV +N+
Sbjct: 178 TLLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 185/355 (52%), Gaps = 36/355 (10%)
Query: 185 LLREVHNA----GFSSPTPIQAQSWPIALQSRD--IVAIAKTGSGKTLGYLLPGFIHLKR 238
L +E+H A F TP+Q ++ L S D ++A AKTG+GKT +L+P F HL
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 239 CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS----RISCTCLYGGAPKGPQLKDID 294
+ D + ++++PTR+LA QI+ E K + + +C L GG + ++
Sbjct: 88 TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN 147
Query: 295 RGV-DIVVATPGRLNDILEMRRISLNQ-VSYLVLDEADRMLDMGFE---PQIRKIVKEVP 349
+ +IV+ATPGRL D+LE + V Y VLDEADR+L++GF I I+ E
Sbjct: 148 KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKN 207
Query: 350 ARR----QTLMYTATWPREVRKIAADLLVNPVQVNIGNVD--ELAANKAITQHI------ 397
++ +TL+++AT +V+K+A +++ + + VD E A++ I Q +
Sbjct: 208 SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267
Query: 398 --EVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKK----MCDQLARNLTRQFGAAAIHGD 451
+ A ++ +++ ++ ++ K I+F T K +C L + HG
Sbjct: 268 ANSIFAAVE---HIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 324
Query: 452 KSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
+Q++R ++ +F+ S +LV TDV ARG+D ++ V+ P+ + +Y+HRI
Sbjct: 325 ITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 379
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 106/355 (29%), Positives = 185/355 (52%), Gaps = 36/355 (10%)
Query: 185 LLREVHNA----GFSSPTPIQAQSWPIALQSRD--IVAIAKTGSGKTLGYLLPGFIHLKR 238
L +E+H A F TP+Q ++ L S D ++A AKTG+GKT +L+P F HL
Sbjct: 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 138
Query: 239 CRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS----RISCTCLYGGAPKGPQLKDID 294
+ D + ++++PTR+LA QI+ E K + + +C L GG + ++
Sbjct: 139 TKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN 198
Query: 295 RGV-DIVVATPGRLNDILEMRRISLNQ-VSYLVLDEADRMLDMGFE---PQIRKIVKEVP 349
+ +IV+ATPGRL D+LE + V Y VLDEADR+L++GF I I+ E
Sbjct: 199 KLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKN 258
Query: 350 ARR----QTLMYTATWPREVRKIAADLLVNPVQVNIGNVD--ELAANKAITQHI------ 397
++ +TL+++AT +V+K+A +++ + + VD E A++ I Q +
Sbjct: 259 SKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318
Query: 398 --EVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKK----MCDQLARNLTRQFGAAAIHGD 451
+ A ++ +++ ++ ++ K I+F T K +C L + HG
Sbjct: 319 ANSIFAAVE---HIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGK 375
Query: 452 KSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
+Q++R ++ +F+ S +LV TDV ARG+D ++ V+ P+ + +Y+HRI
Sbjct: 376 ITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 430
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 184/353 (52%), Gaps = 36/353 (10%)
Query: 187 REVHNA----GFSSPTPIQAQSWPIALQSRD--IVAIAKTGSGKTLGYLLPGFIHLKRCR 240
+E+H A F TP+Q ++ L S D ++A AKTG+GKT +L+P F HL +
Sbjct: 30 KEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTK 89
Query: 241 NDPRLGPTVLVLSPTRELATQIQDEAVKFGKSS----RISCTCLYGGAPKGPQLKDIDRG 296
D + ++++PTR+LA QI+ E K + + +C L GG + +++
Sbjct: 90 FDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKL 149
Query: 297 V-DIVVATPGRLNDILEMRRISLNQ-VSYLVLDEADRMLDMGFE---PQIRKIVKEVPAR 351
+IV+ATPGRL D+LE + V Y VLDEADR+L++GF I I+ E ++
Sbjct: 150 RPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK 209
Query: 352 R----QTLMYTATWPREVRKIAADLLVNPVQVNIGNVD--ELAANKAITQHI-------- 397
+TL+++AT +V+K+A +++ + + VD E A++ I Q +
Sbjct: 210 SADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFAN 269
Query: 398 EVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKK----MCDQLARNLTRQFGAAAIHGDKS 453
+ A ++ +++ ++ ++ K I+F T K +C L + HG +
Sbjct: 270 SIFAAVE---HIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKIT 326
Query: 454 QSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
Q++R ++ +F+ S +LV TDV ARG+D ++ V+ P+ + +Y+HRI
Sbjct: 327 QNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 379
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 139 bits (349), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 98/340 (28%), Positives = 167/340 (49%), Gaps = 24/340 (7%)
Query: 200 IQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL-GPTVLVLSPTR 256
IQ ++ P+ L + R+++ +++G+GKT + L R D + P + L+P+R
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTML-----SRVDASVPKPQAICLAPSR 199
Query: 257 ELATQIQDEAVKFGKSSRISCTC-LYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRR 315
ELA QI D + GK + + + PKG ++ IV+ TPG + D+++ R+
Sbjct: 200 ELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKID-----AQIVIGTPGTVMDLMKRRQ 254
Query: 316 ISLNQVSYLVLDEADRMLDM-GFEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLV 374
+ + VLDEAD MLD G Q +I +P Q ++++AT+ V K A
Sbjct: 255 LDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAP 314
Query: 375 NPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQ 434
N ++ + +EL+ +++ + K+ L ++ G II FC K ++
Sbjct: 315 NANEIRL-KTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSII-FCKKKDTAEE 372
Query: 435 LARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNY 493
+AR +T A + G+ ++RD +++ FR G S VLV T+V ARG+D+ + +VVNY
Sbjct: 373 IARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNY 432
Query: 494 DFPTGV------EDYVHRIXXXXXXXXXXVAYTFFGDQDS 527
D P + Y+HRI V+ F D+ S
Sbjct: 433 DMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKS 472
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 115/185 (62%), Gaps = 1/185 (0%)
Query: 186 LREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL 245
L+ + GF++ T IQ +S L+ RD++A AKTGSGKTL +L+P + + R PR
Sbjct: 66 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRN 125
Query: 246 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPG 305
G VL+LSPTRELA Q + + + GG+ + + + + G++I+VATPG
Sbjct: 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPG 185
Query: 306 RLNDILEMR-RISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPRE 364
RL D ++ + LV+DEADR+LD+GFE ++++I+K +P RRQT++++AT R+
Sbjct: 186 RLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRK 245
Query: 365 VRKIA 369
V +A
Sbjct: 246 VEDLA 250
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 80/210 (38%), Positives = 120/210 (57%), Gaps = 5/210 (2%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+F G L G++ PT IQ ++ P+ALQ RDI+ +A+TGSGKT + LP
Sbjct: 44 TFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILN 103
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
L RL LVL+PTRELA QI ++ G S + + GG Q +
Sbjct: 104 AL--LETPQRL--FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA 159
Query: 295 RGVDIVVATPGRLNDILEMRR-ISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
+ I++ATPGRL D LE + +L + YLV+DEADR+L+M FE ++ KI+K +P R+
Sbjct: 160 KKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRK 219
Query: 354 TLMYTATWPREVRKIAADLLVNPVQVNIGN 383
T +++AT ++V+K+ L NPV+ + +
Sbjct: 220 TFLFSATMTKKVQKLQRAALKNPVKCAVSS 249
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 132 bits (331), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 176/346 (50%), Gaps = 25/346 (7%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPG 232
SF+ P+LL+ V+ GF+ P+ IQ + P+ L ++++A +++G+GKT ++L
Sbjct: 63 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 122
Query: 233 FIHLKRCRNDPRLGPTVLVLSPTRELATQ---IQDEAVKFGKSSRISCTCLYGGAPKGPQ 289
++ P+ L LSPT ELA Q + ++ KF +++ +G +
Sbjct: 123 LSQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK 178
Query: 290 LKDIDRGVDIVVATPGRLNDIL-EMRRISLNQVSYLVLDEADRML-DMGFEPQIRKIVKE 347
+ + IV+ TPG + D +++ I ++ VLDEAD M+ G + Q +I +
Sbjct: 179 ISE-----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 233
Query: 348 VPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 407
+P Q L+++AT+ V K A ++ +P + + +E I Q+ + + D+
Sbjct: 234 LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETL--DTIKQYYVLCSSRDEKF 291
Query: 408 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRA 466
+ L ++ ++FC T+K LA L+++ A + G+ +R V+ +FR
Sbjct: 292 QALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE 351
Query: 467 GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGV------EDYVHRI 506
G+ VLV T+V ARG+D++ + VV+N+D P E Y+HRI
Sbjct: 352 GKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 397
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 132 bits (331), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 176/346 (50%), Gaps = 25/346 (7%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPG 232
SF+ P+LL+ V+ GF+ P+ IQ + P+ L ++++A +++G+GKT ++L
Sbjct: 26 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 85
Query: 233 FIHLKRCRNDPRLGPTVLVLSPTRELATQ---IQDEAVKFGKSSRISCTCLYGGAPKGPQ 289
++ P+ L LSPT ELA Q + ++ KF +++ +G +
Sbjct: 86 LSQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK 141
Query: 290 LKDIDRGVDIVVATPGRLNDIL-EMRRISLNQVSYLVLDEADRML-DMGFEPQIRKIVKE 347
+ + IV+ TPG + D +++ I ++ VLDEAD M+ G + Q +I +
Sbjct: 142 ISE-----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 196
Query: 348 VPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 407
+P Q L+++AT+ V K A ++ +P + + +E I Q+ + + D+
Sbjct: 197 LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETL--DTIKQYYVLCSSRDEKF 254
Query: 408 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRA 466
+ L ++ ++FC T+K LA L+++ A + G+ +R V+ +FR
Sbjct: 255 QALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE 314
Query: 467 GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGV------EDYVHRI 506
G+ VLV T+V ARG+D++ + VV+N+D P E Y+HRI
Sbjct: 315 GKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 360
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 176/346 (50%), Gaps = 25/346 (7%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPG 232
SF+ P+LL+ V+ GF+ P+ IQ + P+ L ++++A +++G+GKT ++L
Sbjct: 42 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 101
Query: 233 FIHLKRCRNDPRLGPTVLVLSPTRELATQ---IQDEAVKFGKSSRISCTCLYGGAPKGPQ 289
++ P+ L LSPT ELA Q + ++ KF +++ +G +
Sbjct: 102 LSQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK 157
Query: 290 LKDIDRGVDIVVATPGRLNDIL-EMRRISLNQVSYLVLDEADRML-DMGFEPQIRKIVKE 347
+ + IV+ TPG + D +++ I ++ VLDEAD M+ G + Q +I +
Sbjct: 158 ISE-----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 212
Query: 348 VPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 407
+P Q L+++AT+ V K A ++ +P + + +E I Q+ + + D+
Sbjct: 213 LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETL--DTIKQYYVLCSSRDEKF 270
Query: 408 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRA 466
+ L ++ ++FC T+K LA L+++ A + G+ +R V+ +FR
Sbjct: 271 QALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE 330
Query: 467 GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGV------EDYVHRI 506
G+ VLV T+V ARG+D++ + VV+N+D P E Y+HRI
Sbjct: 331 GKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 376
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 96/346 (27%), Positives = 176/346 (50%), Gaps = 25/346 (7%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPG 232
SF+ P+LL+ V+ GF+ P+ IQ + P+ L ++++A +++G+GKT ++L
Sbjct: 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 233 FIHLKRCRNDPRLGPTVLVLSPTRELATQ---IQDEAVKFGKSSRISCTCLYGGAPKGPQ 289
++ P+ L LSPT ELA Q + ++ KF +++ +G +
Sbjct: 153 LSQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK 208
Query: 290 LKDIDRGVDIVVATPGRLNDIL-EMRRISLNQVSYLVLDEADRML-DMGFEPQIRKIVKE 347
+ + IV+ TPG + D +++ I ++ VLDEAD M+ G + Q +I +
Sbjct: 209 ISE-----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 263
Query: 348 VPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEVLAPMDKHR 407
+P Q L+++AT+ V K A ++ +P + + +E I Q+ + + D+
Sbjct: 264 LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETL--DTIKQYYVLCSSRDEKF 321
Query: 408 RLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRA 466
+ L ++ ++FC T+K LA L+++ A + G+ +R V+ +FR
Sbjct: 322 QALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE 381
Query: 467 GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGV------EDYVHRI 506
G+ VLV T+V ARG+D++ + VV+N+D P E Y+HRI
Sbjct: 382 GKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRI 427
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 129 bits (323), Expect = 8e-30, Method: Composition-based stats.
Identities = 67/166 (40%), Positives = 101/166 (60%), Gaps = 1/166 (0%)
Query: 388 AANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAA 446
+ ++ ITQ + + DK L +L + S +VF TKK D L L + +
Sbjct: 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACT 74
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
+IHGD+SQ +R+ L+QFR+G+SP+LVAT VAARGLDI +++ V+N+D P+ +E+YVHRI
Sbjct: 75 SIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRI 134
Query: 507 XXXXXXXXXXVAYTFFGDQDSRYASDLIKLLEGAKQQVPRELRDMA 552
+A +FF +++ DL+ LL AKQ+VP L +MA
Sbjct: 135 GRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 180
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 125 bits (314), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 74/192 (38%), Positives = 111/192 (57%), Gaps = 2/192 (1%)
Query: 186 LREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRL 245
L+ + A + T IQ Q+ +ALQ +D++ AKTGSGKTL +L+P L R +
Sbjct: 37 LKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTD 96
Query: 246 GPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPG 305
G VL++SPTRELA Q + K GK+ S + GG + + I+ ++I+V TPG
Sbjct: 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERIN-NINILVCTPG 155
Query: 306 R-LNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTATWPRE 364
R L + E + LVLDEADR+LDMGF + +++ +P +RQTL+++AT +
Sbjct: 156 RLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKS 215
Query: 365 VRKIAADLLVNP 376
V+ +A L NP
Sbjct: 216 VKDLARLSLKNP 227
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 114/208 (54%), Gaps = 9/208 (4%)
Query: 176 FDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIH 235
F+ ELL + G+ P+PIQ +S PIAL RDI+A AK G+GK+ YL+P
Sbjct: 5 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 64
Query: 236 LKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGK---SSRISCTCLYGGAPKGPQLKD 292
L +++ + +V+ PTRELA Q+ ++ K +++ T GG +
Sbjct: 65 LDLKKDNIQ----AMVIVPTRELALQVSQICIQVSKHMGGAKVMATT--GGTNLRDDIMR 118
Query: 293 IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARR 352
+D V +V+ATPGR+ D+++ ++ V +VLDEAD++L F + I+ +P R
Sbjct: 119 LDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR 178
Query: 353 QTLMYTATWPREVRKIAADLLVNPVQVN 380
Q L+Y+AT+P V+K L P ++N
Sbjct: 179 QILLYSATFPLSVQKFMNSHLEKPYEIN 206
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 125/237 (52%), Gaps = 14/237 (5%)
Query: 157 RRRHEVTVSGDEVPPPFMSFDATG----FPPELLREVHNAGFSSPTPIQAQSWPIALQSR 212
R +H++ V G ++P P +F LL+ + +AGF PTPIQ Q+ P+ L R
Sbjct: 8 RNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGR 67
Query: 213 DIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKS 272
+++A A TGSGKTL + +P + LK+ N G L++SPTRELA+QI E +K +
Sbjct: 68 ELLASAPTGSGKTLAFSIPILMQLKQPANK---GFRALIISPTRELASQIHRELIKISEG 124
Query: 273 SRISCTCLYGGAPKGPQL-KDIDRGVDIVVATPGRLNDILEMR--RISLNQVSYLVLDEA 329
+ ++ A + + DI+V TP RL +L+ I L V +LV+DE+
Sbjct: 125 TGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDES 184
Query: 330 DRMLD---MGFEPQIRKIVKEVPARR-QTLMYTATWPREVRKIAADLLVNPVQVNIG 382
D++ + GF Q+ I + + + M++AT+ +V + L N + V+IG
Sbjct: 185 DKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIG 241
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 5/206 (2%)
Query: 176 FDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIH 235
FD +LLR V GF P+ IQ ++ ++ D++A A++G+GKT + +
Sbjct: 23 FDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAA--- 79
Query: 236 LKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR 295
L+R + P L+L+PTRELA QIQ + I GG + + R
Sbjct: 80 LQRIDTSVK-APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-R 137
Query: 296 GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 355
IVV TPGR+ D ++ RR +++ +LDEAD ML GF+ QI +I +P Q +
Sbjct: 138 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV 197
Query: 356 MYTATWPREVRKIAADLLVNPVQVNI 381
+ +AT P +V ++ + NPV++ +
Sbjct: 198 LLSATMPNDVLEVTTKFMRNPVRILV 223
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 109/212 (51%), Gaps = 6/212 (2%)
Query: 176 FDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIH 235
FD LLR V GF P+ IQ ++ ++ D++A A++G+GKT + +
Sbjct: 16 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAA--- 72
Query: 236 LKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDR 295
L+R + P L+L+PTRELA QIQ + I GG + + R
Sbjct: 73 LQRIDTSVK-APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL-R 130
Query: 296 GVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTL 355
IVV TPGR+ D ++ RR +++ +LDEAD ML GF+ QI +I +P Q +
Sbjct: 131 DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVV 190
Query: 356 MYTATWPREVRKIAADLLVNPVQVNIGNVDEL 387
+ +AT P +V ++ + NPV++ + DEL
Sbjct: 191 LLSATMPNDVLEVTTKFMRNPVRILVKK-DEL 221
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 110 bits (276), Expect = 2e-24, Method: Composition-based stats.
Identities = 69/205 (33%), Positives = 105/205 (51%), Gaps = 8/205 (3%)
Query: 181 FPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCR 240
F P ++ + F PT IQ + P AL+ V ++TG+GKT YLLP +K R
Sbjct: 11 FQPFIIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEKIKPER 70
Query: 241 NDPRLGPTVLVLSPTRELATQIQDEAVKFGK----SSRISCTCLYGGAPKGPQLKDIDRG 296
+ + ++ +PTRELATQI E +K K I CL GG K L+ ++
Sbjct: 71 AEVQ----AVITAPTRELATQIYHETLKITKFCPKDRXIVARCLIGGTDKQKALEKLNVQ 126
Query: 297 VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLM 356
IV+ TPGR+ND + + + ++ LV+DEAD LD GF + +I P Q L+
Sbjct: 127 PHIVIGTPGRINDFIREQALDVHTAHILVVDEADLXLDXGFITDVDQIAARXPKDLQXLV 186
Query: 357 YTATWPREVRKIAADLLVNPVQVNI 381
++AT P +++ NP V++
Sbjct: 187 FSATIPEKLKPFLKKYXENPTFVHV 211
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 5/206 (2%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
+FD LLR ++ GF P+ IQ ++ ++ D++A A++G+GKT + +
Sbjct: 31 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQ 90
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
L+ + + LVL+PTRELA QIQ + G +C GG +++ +
Sbjct: 91 QLEIEFKETQ----ALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQ 146
Query: 295 -RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
IVV TPGR+ D+L R +S + VLDEAD ML GF+ QI +I +++ Q
Sbjct: 147 AEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQ 206
Query: 354 TLMYTATWPREVRKIAADLLVNPVQV 379
++ +AT P +V ++ + +P+++
Sbjct: 207 VVLLSATMPTDVLEVTKKFMRDPIRI 232
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 108 bits (270), Expect = 1e-23, Method: Composition-based stats.
Identities = 65/223 (29%), Positives = 117/223 (52%), Gaps = 14/223 (6%)
Query: 166 GDEVPPPFMSFDATGF-----PPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKT 220
G +V ++S ++GF PELLR + + GF P+ +Q + P A+ D++ AK+
Sbjct: 1 GSDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 60
Query: 221 GSGKTLGYLLPGFIHLKRCRNDPRLGP-TVLVLSPTRELATQIQDEAVKFGK-SSRISCT 278
G GKT ++L L +P G +VLV+ TRELA QI E +F K +
Sbjct: 61 GMGKTAVFVLATLQQL-----EPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 115
Query: 279 CLYGGAPKGPQLKDIDRGV-DIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD-MG 336
+GG + + + IVV TPGR+ + + ++L + + +LDE D+ML+ +
Sbjct: 116 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 175
Query: 337 FEPQIRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQV 379
+++I + P +Q +M++AT +E+R + + +P+++
Sbjct: 176 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 218
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 106 bits (264), Expect = 4e-23, Method: Composition-based stats.
Identities = 65/206 (31%), Positives = 105/206 (50%), Gaps = 5/206 (2%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFI 234
SFD LLR ++ GF P+ IQ ++ + D++A A++G+G T + +
Sbjct: 16 SFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAIS--- 72
Query: 235 HLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDID 294
L++ D LVL+PTRELA QIQ + G SC GG +++ +
Sbjct: 73 ILQQIELD-LXATQALVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVRAEVQXLQ 131
Query: 295 -RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQ 353
I+V TPGR+ D+L R +S + VLDEAD ML GF QI I + + + Q
Sbjct: 132 MEAPHIIVGTPGRVFDMLNRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQXLNSNTQ 191
Query: 354 TLMYTATWPREVRKIAADLLVNPVQV 379
++ +AT P +V ++ + +P+++
Sbjct: 192 VVLLSATMPSDVLEVTXXFMRDPIRI 217
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 96.3 bits (238), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 7/223 (3%)
Query: 163 TVSGDEVPPPFMSFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQSRDIVAIAKTGS 222
T +GD + F++ +L + AGF P+P+Q ++ P+ D++ AK+G+
Sbjct: 13 TRTGDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGT 72
Query: 223 GKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFG-KSSRISCTCLY 281
GKT + I L + L +L+L+PTRE+A QI G K + C
Sbjct: 73 GKTCVF---STIALDSLVLE-NLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFI 128
Query: 282 GGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMG-FEPQ 340
GG P Q K + I V +PGR+ ++E+ ++ + +LDEAD++L+ G F+ Q
Sbjct: 129 GGTPLS-QDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQ 187
Query: 341 IRKIVKEVPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGN 383
I I +PA +Q L +AT+P + + +P V + +
Sbjct: 188 INWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNS 230
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 95.9 bits (237), Expect = 6e-20, Method: Composition-based stats.
Identities = 60/204 (29%), Positives = 109/204 (53%), Gaps = 11/204 (5%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPG 232
SFD G PELL+ ++ F P+ IQ ++ P+ L + R+++A +++G+GKT + L
Sbjct: 23 SFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 82
Query: 233 FIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKD 292
+ N P + L+P+RELA Q + + GK ++I+ + P + K+
Sbjct: 83 LTRV----NPEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLI---VPDSFE-KN 134
Query: 293 IDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD-MGFEPQIRKIVKEVPAR 351
++V TPG + D++ + + L ++ VLDEAD MLD G Q ++ + +P
Sbjct: 135 KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKD 194
Query: 352 RQTLMYTATWPREVRKIAADLLVN 375
Q ++++AT+ VR+ A ++ N
Sbjct: 195 TQLVLFSATFADAVRQYAKKIVPN 218
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 94.7 bits (234), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/164 (37%), Positives = 83/164 (50%), Gaps = 4/164 (2%)
Query: 388 AANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLT-RQFGAA 446
AA+ + Q +E + K L + L+ P +++F K D + L + A
Sbjct: 25 AASLDVIQEVEYVKEEAKMVYLLECLQKTPP--PVLIFAEKKADVDAIHEYLLLKGVEAV 82
Query: 447 AIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
AIHG K Q ER + FR G+ VLVATDVA++GLD I+ V+NYD P +E+YVHRI
Sbjct: 83 AIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRI 142
Query: 507 XXXXXXXXXXVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPRELR 549
+A TF D DL LL AKQ+VP L+
Sbjct: 143 GRTGCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQ 186
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 90.5 bits (223), Expect = 3e-18, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 77/130 (59%), Gaps = 1/130 (0%)
Query: 420 SKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVA 478
++ ++FC+T++ ++L L +F +AI+ D Q ERD ++ +FR+G S +L++TD+
Sbjct: 31 TQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 90
Query: 479 ARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDLIKLLE 538
ARG+D++ + +V+NYD P E+Y+HRI VA F ++D +L K
Sbjct: 91 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYS 150
Query: 539 GAKQQVPREL 548
+++P ++
Sbjct: 151 TQIEELPSDI 160
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 49/131 (37%), Positives = 72/131 (54%), Gaps = 2/131 (1%)
Query: 404 DKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-QFGAAAIHGDKSQSERDYVLN 462
+K L+ +L ++ P S I+FC TK+ +QL L + IHG Q +R V+N
Sbjct: 21 NKFSLLKDVLMTENPDS-CIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMN 79
Query: 463 QFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFF 522
+F+ G LVATDVAARG+DI++I +V+NYD P E YVHR A +F
Sbjct: 80 EFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFV 139
Query: 523 GDQDSRYASDL 533
+ R+ +D+
Sbjct: 140 TAFEKRFLADI 150
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 78.2 bits (191), Expect = 1e-14, Method: Composition-based stats.
Identities = 52/131 (39%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 404 DKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAI-HGDKSQSERDYVLN 462
DK L ++ GS II F +TKK + L L + +I HGD ERD +++
Sbjct: 22 DKFDVLTELYGVXTIGSSII-FVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLID 80
Query: 463 QFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPT---GVED---YVHRIXXXXXXXXXX 516
FR GRS VL+ T+V ARG+DI + VVNYD PT G D Y+HRI
Sbjct: 81 DFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKG 140
Query: 517 VAYTFFGDQDS 527
VA +F D++S
Sbjct: 141 VAISFVHDKNS 151
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 52/131 (39%), Positives = 69/131 (52%), Gaps = 8/131 (6%)
Query: 404 DKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAI-HGDKSQSERDYVLN 462
DK L ++ GS II F +TKK + L L + +I HGD ERD +++
Sbjct: 23 DKFDVLTELYGLXTIGSSII-FVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLID 81
Query: 463 QFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPT---GVED---YVHRIXXXXXXXXXX 516
FR GRS VL+ T+V ARG+DI + VVNYD PT G D Y+HRI
Sbjct: 82 DFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKG 141
Query: 517 VAYTFFGDQDS 527
VA +F D++S
Sbjct: 142 VAISFVHDKNS 152
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 112/219 (51%), Gaps = 16/219 (7%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPG 232
SF+ P+LL+ V+ GF+ P+ IQ + P+ L ++++A +++G+GKT ++L
Sbjct: 26 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 85
Query: 233 FIHLKRCRNDPRLGPTVLVLSPTRELATQ---IQDEAVKFGKSSRISCTCLYGGAPKGPQ 289
++ P+ L LSPT ELA Q + ++ KF +++ +G +
Sbjct: 86 LSQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK 141
Query: 290 LKDIDRGVDIVVATPGRLNDIL-EMRRISLNQVSYLVLDEADRML-DMGFEPQIRKIVKE 347
+ + IV+ TPG + D +++ I ++ VLDEAD M+ G + Q +I +
Sbjct: 142 ISE-----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 196
Query: 348 VPARRQTLMYTATWPREVRKIAADLLVNPVQVNIGNVDE 386
+P Q L+++AT+ V K A ++ +P + + +E
Sbjct: 197 LPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE 235
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 70/131 (53%), Gaps = 8/131 (6%)
Query: 404 DKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAI-HGDKSQSERDYVLN 462
DK L ++ GS II F +TKK + L L + +I HGD ERD +++
Sbjct: 21 DKFDVLTELYGLMTIGSSII-FVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLID 79
Query: 463 QFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPT---GVED---YVHRIXXXXXXXXXX 516
FR GRS VL+ T+V ARG+DI + +VVNYD PT G D Y+HRI
Sbjct: 80 DFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKG 139
Query: 517 VAYTFFGDQDS 527
VA +F D++S
Sbjct: 140 VAISFVHDKNS 150
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 108/209 (51%), Gaps = 16/209 (7%)
Query: 175 SFDATGFPPELLREVHNAGFSSPTPIQAQSWPIALQS--RDIVAIAKTGSGKTLGYLLPG 232
SF+ P+LL+ V+ GF+ P+ IQ + P+ L ++++A +++G+GKT ++L
Sbjct: 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAM 152
Query: 233 FIHLKRCRNDPRLGPTVLVLSPTRELATQ---IQDEAVKFGKSSRISCTCLYGGAPKGPQ 289
++ P+ L LSPT ELA Q + ++ KF +++ +G +
Sbjct: 153 LSQVEPANKYPQ----CLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK 208
Query: 290 LKDIDRGVDIVVATPGRLNDIL-EMRRISLNQVSYLVLDEADRML-DMGFEPQIRKIVKE 347
+ + IV+ TPG + D +++ I ++ VLDEAD M+ G + Q +I +
Sbjct: 209 ISE-----QIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRM 263
Query: 348 VPARRQTLMYTATWPREVRKIAADLLVNP 376
+P Q L+++AT+ V K A ++ +P
Sbjct: 264 LPRNCQMLLFSATFEDSVWKFAQKVVPDP 292
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 421 KIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAA 479
+ +VF TK +++A+ L R A A+HGD SQ ER+ V+ FR G VLVATDVAA
Sbjct: 30 RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAA 89
Query: 480 RGLDIKDIRVVVNYDFPTGVEDYVH 504
RGLDI + +VV+Y P E Y H
Sbjct: 90 RGLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 421 KIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAA 479
+ +VF TK +++A+ L R A A+HGD SQ ER+ VL FR G VLVATDVAA
Sbjct: 33 RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92
Query: 480 RGLDIKDIRVVVNYDFPTGVEDYVH 504
RGLDI + +VV+Y P E Y H
Sbjct: 93 RGLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 4/164 (2%)
Query: 392 AITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHG 450
+ Q+ L +K+R+L +L E +++++F + + C LA+ L Q F A AIH
Sbjct: 5 GLQQYYVKLKDNEKNRKLFDLLDVLE-FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 63
Query: 451 DKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXX 510
Q ER QF+ + +LVAT++ RG+DI+ + + NYD P + Y+HR+
Sbjct: 64 GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAG 123
Query: 511 XXXXXXVAYTFFGDQ-DSRYASDLIKLLEGAKQQVPRELRDMAS 553
+A TF D+ D++ +D+ E ++P E+ D++S
Sbjct: 124 RFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI-DISS 166
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 75/134 (55%), Gaps = 7/134 (5%)
Query: 375 NPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSKIIVFCSTKKMCDQ 434
+P ++N+ ++EL K +TQ+ + K L + S+ ++ I+FC++ + +
Sbjct: 4 DPYEINL--MEELTL-KGVTQYYAYVTERQKVHCLNTLF-SRLQINQSIIFCNSSQRVEL 59
Query: 435 LARNLTRQFGAAA--IHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVN 492
LA+ ++ Q G + IH Q R+ V + FR G LV TD+ RG+DI+ + VV+N
Sbjct: 60 LAKKIS-QLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVIN 118
Query: 493 YDFPTGVEDYVHRI 506
+DFP E Y+HRI
Sbjct: 119 FDFPKLAETYLHRI 132
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 413 LRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGA--AAIHGDKSQSERDYVLNQFRAGRSP 470
L Q ++ IVF ++ +LA N R+ G + G+ Q +R+ + + GR
Sbjct: 24 LLKQPEATRSIVFVRKRERVHELA-NWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVN 82
Query: 471 VLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
VLVATDVAARG+DI D+ V N+D P + Y+HRI
Sbjct: 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRI 118
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 59/110 (53%), Gaps = 8/110 (7%)
Query: 404 DKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLN 462
DK++ L I S G II FC T++ L + + + + G+ + +R ++
Sbjct: 20 DKYQALCNIYGSITIGQAII-FCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQ 78
Query: 463 QFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPT------GVEDYVHRI 506
+FR G+ VL+ T+V ARG+D+K + +VVN+D P E Y+HRI
Sbjct: 79 RFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRI 128
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/326 (23%), Positives = 141/326 (43%), Gaps = 43/326 (13%)
Query: 193 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 252
G+ P Q + L RD + + TG GK+L Y +P + L +V+
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALL----------LNGLTVVV 71
Query: 253 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRG----VDIVVATPGRLN 308
SP L + ++D+ + +++ ++ CL + QL+ + + ++ P RL
Sbjct: 72 SP---LISLMKDQVDQL-QANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLM 127
Query: 309 DILEMRRISLNQVSYLVLDEADRMLDMG--FEP------QIRKIVKEVPARRQTLMYTAT 360
+ ++ L +DEA + G F P Q+R+ +P + TAT
Sbjct: 128 LDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLP----FMALTAT 183
Query: 361 WPREVRKIAADLL-VNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILR--SQE 417
R+ LL +N + I + D + M+K + L+Q++R ++
Sbjct: 184 ADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYML---------MEKFKPLDQLMRYVQEQ 234
Query: 418 PGSKIIVFCSTK-KMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATD 476
G I++C+++ K+ D AR ++ AAA H + R V +F+ ++VAT
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 294
Query: 477 VAARGLDIKDIRVVVNYDFPTGVEDY 502
G++ ++R VV++D P +E Y
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESY 320
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 136/322 (42%), Gaps = 35/322 (10%)
Query: 193 GFSSPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVL 252
G+ P Q + L RD + + TG GK+L Y +P + L +V+
Sbjct: 22 GYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALL----------LNGLTVVV 71
Query: 253 SPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRG-----VDIVVATPGRL 307
SP L D+ +++ ++ CL + QL ++ G + ++ P RL
Sbjct: 72 SPLISLXKDQVDQL----QANGVAAACLNSTQTREQQL-EVXTGCRTGQIRLLYIAPERL 126
Query: 308 NDILEMRRISLNQVSYLVLDEADRMLDMG--FEPQIRKIVKEVPARRQTLMY---TATWP 362
+ ++ L +DEA + G F P+ + ++ R TL + TAT
Sbjct: 127 XLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAAL-GQLRQRFPTLPFXALTATAD 185
Query: 363 REVRKIAADLL-VNPVQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRSQEPGSK 421
R+ LL +N + I + D + E P+D+ R Q ++ G
Sbjct: 186 DTTRQDIVRLLGLNDPLIQISSFDRPNIRYXLX---EKFKPLDQLXRYVQ----EQRGKS 238
Query: 422 IIVFCSTK-KMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAAR 480
I++C+++ K+ D AR ++ AAA H + R V +F+ ++VAT
Sbjct: 239 GIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGX 298
Query: 481 GLDIKDIRVVVNYDFPTGVEDY 502
G++ ++R VV++D P +E Y
Sbjct: 299 GINKPNVRFVVHFDIPRNIESY 320
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 413 LRSQEPGSKIIVFCSTKK----MCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGR 468
++ ++ K I+F T K +C L + HG +Q++R ++ +F+
Sbjct: 27 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE 86
Query: 469 SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
S +LV TDV ARG+D ++ V+ P+ + +Y+HRI
Sbjct: 87 SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 124
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 413 LRSQEPGSKIIVFCSTKK----MCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGR 468
++ ++ K I+F T K +C L + HG +Q++R ++ +F+
Sbjct: 27 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE 86
Query: 469 SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
S +LV TDV ARG+D ++ V+ P+ + +Y+HRI
Sbjct: 87 SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 124
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 51/98 (52%), Gaps = 4/98 (4%)
Query: 413 LRSQEPGSKIIVFCSTKK----MCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGR 468
++ ++ K I+F T K +C L + HG +Q++R ++ +F+
Sbjct: 27 IKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE 86
Query: 469 SPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
S +LV TDV ARG+D ++ V+ P+ + +Y+HRI
Sbjct: 87 SGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRI 124
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 61/108 (56%), Gaps = 13/108 (12%)
Query: 405 KHRRLEQILRSQ---EPGSKIIVFC----STKKMCDQLARN---LTRQFGAAAIHGDK-- 452
K +L++I+R Q + SKIIVF + KK+ ++L ++ R G A+ D+
Sbjct: 344 KMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGL 403
Query: 453 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYD-FPTGV 499
SQ E+ +L++F G VLVAT V GLD+ ++ +VV Y+ P+ +
Sbjct: 404 SQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAI 451
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 220 TGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTC 279
TG GKTL ++ L + G VL+L+PT+ L Q + +
Sbjct: 32 TGLGKTLIAMMIAEYRL------TKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85
Query: 280 LYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADR 331
L G + K R ++VATP + + L RISL VS +V DEA R
Sbjct: 86 LTGEKSPEERSKAWARA-KVIVATPQTIENDLLAGRISLEDVSLIVFDEAHR 136
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 119/291 (40%), Gaps = 45/291 (15%)
Query: 220 TGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVKFGKSSRISCTC 279
GSGKT+ L ++ G + PT LA Q V+ I
Sbjct: 398 VGSGKTVVAQLA-------ILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVAL 450
Query: 280 LYGGAPKGPQLKDIDRG-----VDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLD 334
L G + K I G +D+V+ T + + + + + L +++DE R
Sbjct: 451 LIGATTPSEKEK-IKSGLRNGQIDVVIGTHALIQEDVHFKNLGL-----VIIDEQHR--- 501
Query: 335 MGFEPQIRKIVKEVPARRQTLMYTAT-WPREVRKIAADLLVNPVQVNIGNVDELAANKAI 393
F + R+ + TL+ +AT PR + L +++ +DE+ +
Sbjct: 502 --FGVKQREALMNKGKMVDTLVMSATPIPRSMA------LAFYGDLDVTVIDEMPPGRKE 553
Query: 394 TQHIEVLAPMDKHRRLEQILRSQ--EPGSKIIVF-----------CSTKKMCDQLARNLT 440
Q + L PMD+ + + +R + G IV+ S +M + L++ +
Sbjct: 554 VQTM--LVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVF 611
Query: 441 RQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV 491
+F +HG SQ E+D V+ +F GR +LV+T V G+D+ V+V
Sbjct: 612 PEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV 662
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 16/105 (15%)
Query: 409 LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTR-----QFGAAAIH----GDKS------ 453
+EQ R++E II F T++ L++ +T + G A H G S
Sbjct: 391 MEQYTRTEESARGII-FTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMT 449
Query: 454 QSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTG 498
Q+E+ V+++FR G+ +L+AT VA GLDIK+ +V+ Y T
Sbjct: 450 QNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTN 494
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 453 SQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPT 497
+Q+E+ V+++FR G+ +L+AT VA GLDIK+ +V+ Y T
Sbjct: 199 TQNEQREVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVT 243
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 83/390 (21%), Positives = 152/390 (38%), Gaps = 53/390 (13%)
Query: 199 PIQAQSWPIALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTREL 258
P+Q ++ + + +++ + TG GK+L Y LP C + G T LV+ P L
Sbjct: 47 PLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPAL-----CSD----GFT-LVICP---L 93
Query: 259 ATQIQDEAVKFGKSSRISCTCLYGGAPK------GPQLKDIDRGVDIVVATP-------- 304
+ ++D+ + K IS T L + K ++ + + + ++ TP
Sbjct: 94 ISLMEDQLMVL-KQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM 152
Query: 305 --GRLNDILEMRRISLNQVSYLVLDEADRMLDMG--FEPQIRK--IVKEVPARRQTLMYT 358
RL E RR + + +DE G F P + I+K + T
Sbjct: 153 FMSRLEKAYEARRFT-----RIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLT 207
Query: 359 ATWPREVRKIAADLLVNPVQVNIGNVDELAANKAITQHIEV-LAPMDKHRRLEQILR--- 414
AT V A +L A+ + EV P + +E I++
Sbjct: 208 ATATNHVLTDAQKILCIEKCFTFT-----ASFNRPNLYYEVRQKPSNTEDFIEDIVKLIN 262
Query: 415 SQEPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLV 473
+ G I++C ++K +Q+ +L A A H + ++ V ++ A V+V
Sbjct: 263 GRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVV 322
Query: 474 ATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIXXXXXXXXXXVAYTFFGDQDSRYASDL 533
AT G+D D+R V+++ +E+Y ++G D S +
Sbjct: 323 ATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382
Query: 534 IKLLEGAKQQVPRELRDMASRGGGMGRPRR 563
+ ++E QQ +L +M S + + RR
Sbjct: 383 V-VMENVGQQ---KLYEMVSYCQNISKCRR 408
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 404 DKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQ 463
+K R+L +IL KII+F ++L +++ F AI S+ ER+ +L
Sbjct: 335 NKIRKLREILERHRK-DKIIIFTR----HNELVYRISKVFLIPAITHRTSREEREEILEG 389
Query: 464 FRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
FR GR +V++ V G+D+ D V V +Y+ R+
Sbjct: 390 FRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRL 432
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus
Xpb
Length = 219
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 404 DKHRRLEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQ 463
+K R+L +IL KII+F ++L +++ F AI S+ ER+ +L
Sbjct: 100 NKIRKLREILERHRK-DKIIIFTRH----NELVYRISKVFLIPAITHRTSREEREEILEG 154
Query: 464 FRAGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRI 506
FR GR +V++ V G+D+ D V V +Y+ R+
Sbjct: 155 FRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRL 197
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 417 EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT 475
E + +V TKKM + L L A +H + ER ++ R G+ VLV
Sbjct: 468 ERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGI 527
Query: 476 DVAARGLDIKDIRVVVNYD 494
++ GLDI ++ +V D
Sbjct: 528 NLLREGLDIPEVSLVAILD 546
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 417 EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT 475
E + +V TKKM + L L A +H + ER ++ R G+ VLV
Sbjct: 443 ERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGI 502
Query: 476 DVAARGLDIKDIRVVVNYD 494
++ GLDI ++ +V D
Sbjct: 503 NLLREGLDIPEVSLVAILD 521
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 417 EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT 475
E + +V TKKM + L L A +H + ER ++ R G+ VLV
Sbjct: 443 ERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGI 502
Query: 476 DVAARGLDIKDIRVVVNYD 494
++ GLDI ++ +V D
Sbjct: 503 NLLREGLDIPEVSLVAILD 521
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 417 EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT 475
E + +V TKKM + L L A +H + ER ++ R G+ VLV
Sbjct: 442 ERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGI 501
Query: 476 DVAARGLDIKDIRVVVNYD 494
++ GLDI ++ +V D
Sbjct: 502 NLLREGLDIPEVSLVAILD 520
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 417 EPGSKIIVFCSTKKMCDQLARNLTRQ-FGAAAIHGDKSQSERDYVLNQFRAGRSPVLVAT 475
E + +V TKKM + L L A +H + ER ++ R G+ VLV
Sbjct: 443 ERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGI 502
Query: 476 DVAARGLDIKDIRVVVNYD 494
++ GLDI ++ +V D
Sbjct: 503 NLLREGLDIPEVSLVAILD 521
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 17/112 (15%)
Query: 405 KHRRLEQILRSQ---EPGSKIIVFCSTKKMCDQLAR----NLTRQFGAAAIHGDKSQSER 457
K R L +L+ + +P +K I+F T+ + D L + N F I + ++ R
Sbjct: 372 KLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNR 431
Query: 458 ---------DYVLNQFRA-GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGV 499
VL FRA G + +L+AT VA G+DI + +V+ Y++ V
Sbjct: 432 ATGXTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNV 483
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 417 EPGSKIIVFCSTKKMCDQLARNLTRQFGAAA--IHGDKSQSERDYVLNQFRAGRSPVLVA 474
E +++V TKKM + L L ++ G +H + ER ++ R G+ VLV
Sbjct: 449 ERNERVLVTTLTKKMSEDLTDYL-KEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVG 507
Query: 475 TDVAARGLDIKDIRVVVNYD 494
++ GLDI ++ +V D
Sbjct: 508 INLLREGLDIPEVSLVAILD 527
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 417 EPGSKIIVFCSTKKMCDQLARNLTRQFGAAA--IHGDKSQSERDYVLNQFRAGRSPVLVA 474
E +++V TKKM + L L ++ G +H + ER ++ R G+ VLV
Sbjct: 443 ERNERVLVTTLTKKMSEDLTDYL-KEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVG 501
Query: 475 TDVAARGLDIKDIRVVVNYD 494
++ GLDI ++ +V D
Sbjct: 502 INLLREGLDIPEVSLVAILD 521
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 121/319 (37%), Gaps = 61/319 (19%)
Query: 198 TPIQAQSWPIALQ------SRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLV 251
TP QAQ+ L + D + G GKT + F+ + + V V
Sbjct: 605 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQ-------VAV 657
Query: 252 LSPTRELATQIQDEAV-KFGK-SSRISCTCLYGGAPKGPQ-LKDIDRG-VDIVVATPGRL 307
L PT LA Q D +F RI + A + Q L ++ G +DI++ T L
Sbjct: 658 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 717
Query: 308 NDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMYTAT-WPREVR 366
++ + + L L++DE R F + ++ +K + A L TAT PR +
Sbjct: 718 QSDVKFKDLGL-----LIVDEEHR-----FGVRHKERIKAMRANVDILTLTATPIPRTLN 767
Query: 367 KIAA-----DLLVNP------VQVNIGNVDELAANKAITQHIEVLAPMDKHRRLEQILRS 415
+ ++ P V+ + D + +AI L +ILR
Sbjct: 768 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAI---------------LREILR- 811
Query: 416 QEPGSKIIVFCSTKKMCDQLARNLTRQFGAAAI---HGDKSQSERDYVLNQFRAGRSPVL 472
G ++ + + + A L A I HG + E + V+N F R VL
Sbjct: 812 ---GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 868
Query: 473 VATDVAARGLDIKDIRVVV 491
V T + G+DI ++
Sbjct: 869 VCTTIIETGIDIPTANTII 887
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 99/261 (37%), Gaps = 51/261 (19%)
Query: 295 RGVDIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQT 354
+ DI++ T +L+ + R LN+V+Y VLDE + D P + + + A+R+
Sbjct: 120 KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESVT--IRAKRRN 177
Query: 355 LMYTATWPREVRKIAADLLVNPVQVN---IGNVDELAANKAITQHIEVLAPMDKHRR--- 408
L+ + ++IA L PV N + ++ + + + V+ + ++
Sbjct: 178 LLALSATISNYKQIAKWLGAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHG 237
Query: 409 ----LEQILRSQEPGSKIIVFCSTKKMCDQLARNLTRQF--------------------- 443
+ L S +++VF +++KM + A +
Sbjct: 238 DDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIE 297
Query: 444 ----------------GAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDI 487
G A H S++ RD + FR + V+VAT A G+++
Sbjct: 298 EGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPAR 357
Query: 488 RVVVN--YDFPTGVEDYVHRI 506
V++ Y F + Y I
Sbjct: 358 TVIIGDIYRFNKKIAGYYDEI 378
>pdb|3TC5|A Chain A, Selective Targeting Of Disease-Relevant Protein Binding
Domains By O- Phosphorylated Natural Product
Derivatives
Length = 166
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 16 YAPEDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54
+ ++ LP W+ + +G +Y++N TN +Q+ERP+
Sbjct: 3 HMADEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPS 41
>pdb|3KAD|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAF|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|2XP6|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
Length = 167
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 19 EDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54
++ LP W+ + +G +Y++N TN +Q+ERP+
Sbjct: 7 DEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPS 42
>pdb|2ITK|A Chain A, Human Pin1 Bound To D-Peptide
pdb|2Q5A|A Chain A, Human Pin1 Bound To L-Peptide
pdb|3KAB|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAG|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAH|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KAI|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3KCE|A Chain A, Structure-Guided Design Of Alpha-Amino Acid-Derived Pin1
Inhibitors
pdb|3ODK|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP3|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP4|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP5|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP7|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP8|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XP9|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XPA|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|2XPB|A Chain A, Discovery Of Cell-Active Phenyl-Imidazole Pin1
Inhibitors By Structure-Guided Fragment Evolution
pdb|3NTP|A Chain A, Human Pin1 Complexed With Reduced Amide Inhibitor
Length = 167
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 19 EDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54
++ LP W+ + +G +Y++N TN +Q+ERP+
Sbjct: 7 DEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPS 42
>pdb|2ZR6|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
pdb|3OOB|A Chain A, Structural And Functional Insights Of Directly Targeting
Pin1 By Epigallocatechin-3-Gallate
Length = 163
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 19 EDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54
++ LP W+ + +G +Y++N TN +Q+ERP+
Sbjct: 3 DEEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPS 38
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 460 VLNQFRA-GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGV 499
+L+ F+A G +L+AT VA G+DI +V+ Y++ V
Sbjct: 451 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 491
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 208 ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI----Q 263
A++ ++ + A TG GKT LL HLK+ + G V A QI Q
Sbjct: 24 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-GKVVF-------FANQIPVYEQ 75
Query: 264 DEAV--KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI-SLNQ 320
++V K+ + T + G + ++ I DI++ TP L + L+ I SL+
Sbjct: 76 QKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 135
Query: 321 VSYLVLDEA 329
+ ++ DE
Sbjct: 136 FTLMIFDEC 144
>pdb|1F8A|B Chain B, Structural Basis For The Phosphoserine-Proline
Recognition By Group Iv Ww Domains
Length = 167
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 19 EDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54
++ LP W+ + +G +Y++N TN +Q+ERP+
Sbjct: 7 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPS 42
>pdb|2ZR5|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 19 EDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54
++ LP W+ + +G +Y++N TN +Q+ERP+
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPS 38
>pdb|2ZQT|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 19 EDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54
++ LP W+ + +G +Y++N TN +Q+ERP+
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPS 38
>pdb|1PIN|A Chain A, Pin1 Peptidyl-Prolyl Cis-Trans Isomerase From Homo
Sapiens
pdb|1NMV|A Chain A, Solution Structure Of Human Pin1
Length = 163
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 19 EDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54
++ LP W+ + +G +Y++N TN +Q+ERP+
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPS 38
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 460 VLNQFRA-GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGV 499
+L+ F+A G +L+AT VA G+DI +V+ Y++ V
Sbjct: 452 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 492
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 208 ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI----Q 263
A++ ++ + A TG GKT LL HLK+ + G V A QI Q
Sbjct: 25 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-GKVVF-------FANQIPVYEQ 76
Query: 264 DEAV--KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI-SLNQ 320
+++V K+ + T + G + ++ I DI++ TP L + L+ I SL+
Sbjct: 77 NKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 136
Query: 321 VSYLVLDEA 329
+ ++ DE
Sbjct: 137 FTLMIFDEC 145
>pdb|2ZQS|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 19 EDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54
++ LP W+ + +G +Y++N TN +Q+ERP+
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQWERPS 38
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 460 VLNQFRA-GRSPVLVATDVAARGLDIKDIRVVVNYDFPTGV 499
+L+ F+A G +L+AT VA G+DI +V+ Y++ V
Sbjct: 443 ILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNV 483
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 58/129 (44%), Gaps = 15/129 (11%)
Query: 208 ALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQI----Q 263
A++ ++ + A TG GKT LL HLK+ + G V A QI Q
Sbjct: 16 AMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQK-GKVVF-------FANQIPVYEQ 67
Query: 264 DEAV--KFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLNDILEMRRI-SLNQ 320
+++V K+ + T + G + ++ I DI++ TP L + L+ I SL+
Sbjct: 68 NKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSI 127
Query: 321 VSYLVLDEA 329
+ ++ DE
Sbjct: 128 FTLMIFDEC 136
>pdb|3TCZ|A Chain A, Human Pin1 Bound To Cis Peptidomimetic Inhibitor
pdb|3TDB|A Chain A, Human Pin1 Bound To Trans Peptidomimetic Inhibitor
Length = 158
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 23 LPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54
LP W+ + +G +Y++N TN +Q+ERP+
Sbjct: 2 LPPGWEKAMSRSSGRVYYFNHITNASQWERPS 33
>pdb|2ZJO|A Chain A, Crystal Structure Of Hepatitis C Virus Ns3 Helicase With A
Novel Inhibitor
Length = 482
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 419 GSKIIVFCSTKKMCDQLARNLTRQFGAAAIHGDKSQSERDYVLNQFRAGRSPVLVATDVA 478
G + ++FC +KK CD+LA L+ A IH D ++ A + V+VATD
Sbjct: 206 GGRHLIFCHSKKKCDELAAKLS----ALGIHAVAYYRGLD--VSVIPASGNVVVVATDAL 259
Query: 479 ARGL 482
G
Sbjct: 260 MTGF 263
>pdb|2ZR4|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 19 EDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54
++ LP W+ + +G +Y++N TN Q+ERP+
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNAAQWERPS 38
>pdb|2ZQU|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 19 EDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54
++ LP W+ + +G +Y++N TN +Q ERP+
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYFNHITNASQAERPS 38
>pdb|2ZQV|A Chain A, Crystal Structure Of A Mutant Pin1 Peptidyl-Prolyl
Cis-Trans Isomerase
Length = 163
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 19 EDPTLPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54
++ LP W+ + +G +Y+ N TN +Q+ERP+
Sbjct: 3 DEEKLPPGWEKRMSRSSGRVYYANHITNASQWERPS 38
>pdb|3OIY|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
pdb|3OIY|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
Length = 414
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 209 LQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 268
+Q + +A TG GKT ++ ++ + + PTV ++ T E ++ DE VK
Sbjct: 34 VQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVK 93
Query: 269 -FG 270
FG
Sbjct: 94 IFG 96
>pdb|2F55|A Chain A, Two Hepatitis C Virus Ns3 Helicase Domains Complexed With
The Same Strand Of Dna
pdb|2F55|B Chain B, Two Hepatitis C Virus Ns3 Helicase Domains Complexed With
The Same Strand Of Dna
pdb|2F55|C Chain C, Two Hepatitis C Virus Ns3 Helicase Domains Complexed With
The Same Strand Of Dna
Length = 435
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 419 GSKIIVFCSTKKMCDQLARNLT 440
G + ++FC +KK CD+LA LT
Sbjct: 172 GGRHLIFCHSKKKCDELAAKLT 193
>pdb|3P4Y|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
- P2 Form
Length = 415
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 209 LQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 268
+Q + +A TG GKT ++ ++ + + PTV ++ T E ++ DE VK
Sbjct: 35 VQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVK 94
Query: 269 -FG 270
FG
Sbjct: 95 IFG 97
>pdb|3P4X|A Chain A, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
pdb|3P4X|B Chain B, Helicase Domain Of Reverse Gyrase From Thermotoga Maritima
Length = 413
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 209 LQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 268
+Q + +A TG GKT ++ ++ + + PTV ++ T E ++ DE VK
Sbjct: 33 VQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVK 92
Query: 269 -FG 270
FG
Sbjct: 93 IFG 95
>pdb|4DDT|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 2
pdb|4DDU|A Chain A, Thermotoga Maritima Reverse Gyrase, C2 Form 1
pdb|4DDV|A Chain A, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDV|B Chain B, Thermotoga Maritima Reverse Gyrase, Triclinic Form
pdb|4DDW|A Chain A, Thermotoga Maritima Reverse Gyrase, C-centered
Orthorhombic Form
pdb|4DDX|A Chain A, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
pdb|4DDX|B Chain B, Thermotoga Maritima Reverse Gyrase, Primitive Monoclinic
Form
Length = 1104
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 209 LQSRDIVAIAKTGSGKTLGYLLPGFIHLKRCRNDPRLGPTVLVLSPTRELATQIQDEAVK 268
+Q + +A TG GKT ++ ++ + + PTV ++ T E ++ DE VK
Sbjct: 91 VQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVK 150
Query: 269 -FG 270
FG
Sbjct: 151 IFG 153
>pdb|1I6C|A Chain A, Solution Structure Of Pin1 Ww Domain
pdb|1I8G|B Chain B, Solution Structure Of Pin1 Ww Domain Complexed With
Cdc25 Phosphothreonine Peptide
pdb|1I8H|B Chain B, Solution Structure Of Pin1 Ww Domain Complexed With
Human Tau Phosphothreonine Peptide
Length = 39
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 23 LPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54
LP W+ + +G +Y++N TN +Q+ERP+
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERPS 33
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 15/111 (13%)
Query: 250 LVLSPTRELATQIQDEAVKFGKSSRISCTCLYGGAPKGPQLKDIDRGVDIVVATPGRLND 309
L PT E +I AVK G S IS G P+G + + G + G
Sbjct: 115 LTQKPTME---EITAAAVKSGAHSFIS------GLPQGYDTEVDEAGSQL----SGGQRQ 161
Query: 310 ILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPAR--RQTLMYT 358
+ + R + + L+LD+A LD + Q+ +++ E P R R L+ T
Sbjct: 162 AVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLIT 212
>pdb|2LB3|A Chain A, Structure Of The Ww Domain Of Pin1 In Complex With A
Human Phosphorylated Smad3 Derived Peptide
Length = 36
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 23 LPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54
LP W+ + +G +Y++N TN +Q+ERP+
Sbjct: 2 LPPGWEKRMSRSSGRVYYFNHITNASQWERPS 33
>pdb|2KCF|A Chain A, The Nmr Solution Structure Of The Isolated Apo Pin1 Ww
Domain
Length = 36
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 23 LPKPWKGLVDGRTGYLYFWNPETNVTQYERPA 54
LP W+ + +G +Y++N TN +Q+ERP+
Sbjct: 4 LPPGWEKRMSRSSGRVYYFNHITNASQWERPS 35
>pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1
pdb|2ZJ5|A Chain A, Archaeal Dna Helicase Hjm Complexed With Adp In Form 1
pdb|2ZJ8|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 2
pdb|2ZJA|A Chain A, Archaeal Dna Helicase Hjm Complexed With Amppcp In Form 2
Length = 720
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 94/228 (41%), Gaps = 34/228 (14%)
Query: 298 DIVVATPGRLNDILEMRRISLNQVSYLVLDEADRMLDMGFEPQIRKIVKEVPARRQTLMY 357
DI++AT + + +L + V LV DE + + I+ + + Q +
Sbjct: 116 DIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGL 175
Query: 358 TATW--PREVRK-IAADLLVN---PVQV------------NIGNVDELAANK-----AIT 394
+AT P E+ + + A+L+V+ PV++ G++D ++ + AI
Sbjct: 176 SATIGNPEELAEWLNAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR 235
Query: 395 QHIEVLAPMDKHRRLEQILRSQEPGSKIIV----FCSTKKMCDQLARNLTRQFGAAAI-- 448
+ L ++ R+ E++ K ++ + ++ D L N T + A AI
Sbjct: 236 KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRG 295
Query: 449 -----HGDKSQSERDYVLNQFRAGRSPVLVATDVAARGLDIKDIRVVV 491
H + ER V FR G +VAT + G++ RV++
Sbjct: 296 GVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVII 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,217,118
Number of Sequences: 62578
Number of extensions: 697280
Number of successful extensions: 1765
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1514
Number of HSP's gapped (non-prelim): 126
length of query: 703
length of database: 14,973,337
effective HSP length: 106
effective length of query: 597
effective length of database: 8,340,069
effective search space: 4979021193
effective search space used: 4979021193
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)